Citrus Sinensis ID: 017371

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370--
Protein Sequence
MAPTRKTEPETSKKGRTSSKLFVPACYSFGFLLVCLIAFLLQIVYFSPISPVLDEVPQPAVLSATQLQDFIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQDGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQLS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHcccEEEEcccccccccEEEcccccEEEEccccEEEEEEcccEEEEEEEccccccEEEEcccccEEEEEccccEEEEEcccEEEEEEEEccEEEEccccEEEcccccEEEEccccccccccccccccccccccEEEEEEccccEEEEEccccccccEEEEcccccEEEEEEccccEEEEEEEcccccccEEEEEEccccccccEEEcccccEEEEEEEcccccccccccHHHHHHHHHccccccEEEEEccccEEEEEEcccccEEEEEEcccccccccEEEEEEEccEEEEEEccccEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHccccccccccEEEcccccEEEEccccEEEEEcccccEEEEEEccccccEEEEcccccEEEEEccccEEEEcccccEEEEEccccccEEEccccEEccccEEEEEcccccccHHHHHHHHHccccccEEEEEccccccEEEEEcccEccccEEEcccccEEEEEEccHHHEEEEEEcccccccEHHHHcccccccccccccccccEEEEEEccccHHHHHHcccHHHHHHHHHcHHHHHHcccccccEEEEEEcccccEEEEEEcccccEEEEEEEEEEEccEEEEEEcccccEEEEEcc
Coil and Loop (DISEMBL)
maptrktepetskkgrtssklfvpacySFGFLLVCLIAFLLQIVyfspispvldevpqpavlsaTQLQDFikvgegsvnhpedasmdkngvIYTATRDGWikrlqdgtwvnwkfidsqtlvgltstkeghLIICdnanglhkvseDGVENFLSYVNGSklrfandvveasdgslyftvssskylpheycldilegkphgqllkydpssnittlvADGFYFangvalsrdedYVVVCESWKFRCRKYWLKGERKGKLETFaenlpgapdninlapdgTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLgggahlihvaedgtiirnlvdptgqLMSFVTSGLQVDNHLYVISLTSnfigkvqls
Flexible Loop (DISEMBL)
maptrktepetskkgrtssklfVPACYSFGFLLVCLIAFLLQIVYFSPISPVLDEVPQPAVLSATQLQDFIKVGEgsvnhpedasmdknGVIYTATRDGWIKRLQDGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLpgapdninlapdGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLtsnfigkvqls
Low Complexity Region (SEG)
MAPTRKTEPETSKKGRTSSKLFVPACYSFGFLLVCLIAFLLQIVYFSPISPVLDEVPQPAVLSATQLQDFIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQDGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQLS
Disordered region (IsUnstruct)
********************LFVPACYSFGFLLVCLIAFLLQIVYFSPISPVLDEVPQPAVLSATQLQDFIKVGE************KNGVIYTATRDGWIKRLQDGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGK****
Disordered Region (DISOPRED)
*************************CYSFGFLLVCLIAFLLQIVYFSPISPVLDEVPQPAVLSATQLQDFIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQDGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQLS
Disordered Region (DISEMBL)
*****************SSKLFVPACYSFGFLLVCLIAFLLQIVYFSPISPVLDEVPQPAVLSATQLQDFIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQDGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQLS
Disordered Region (DISPRO)
****************TSSKLFVPACYSFGFLLVCLIAFLLQIVYFSPISPVLDEVPQPAVLSATQLQDFIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQDGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQLS
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAPTRKTEPETSKKGRTSSKLFVPACYSFGFLLVCLIAFLLQIVYFSPISPVLDEVPQPAVLSATQLQDFIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQDGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQLS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	372	2.2.26 [Sep-21-2011]
Q7TP48	376	Adipocyte plasma membrane	yes	no	0.913	0.904	0.300	5e-35
Q3T0E5	412	Adipocyte plasma membrane	yes	no	0.903	0.815	0.295	1e-34
Q9D7N9	415	Adipocyte plasma membrane	yes	no	0.956	0.857	0.293	2e-34
Q5ZIF1	415	Adipocyte plasma membrane	yes	no	0.970	0.869	0.289	3e-32
B5X3B2	416	Adipocyte plasma membrane	N/A	no	0.860	0.769	0.295	2e-31
Q9HDC9	416	Adipocyte plasma membrane	yes	no	0.956	0.855	0.286	4e-31
Q803F5	415	Adipocyte plasma membrane	no	no	0.865	0.775	0.266	1e-25
P94111	335	Strictosidine synthase 1	no	no	0.470	0.522	0.284	1e-16
P92976	329	Strictosidine synthase 3	no	no	0.424	0.480	0.312	2e-16
P18417	352	Strictosidine synthase OS	N/A	no	0.411	0.434	0.337	6e-10

>sp|Q7TP48|APMAP_RAT Adipocyte plasma membrane-associated protein OS=Rattus norvegicus GN=Apmap PE=2 SV=2

 Score =  149 bits (375), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 113/376 (30%), Positives = 185/376 (49%), Gaps = 36/376 (9%)

Query: 28  SFGFLLVCLIAFLL--QIVYFSPISPVLDEVPQPAVLSA-----TQLQDFIKVGEGSVNH 80
           +F  L V L   LL   ++  SPI P      +P  +       T+L+   ++ E  +N 
Sbjct: 2   TFLMLAVSLAIPLLGAMMLLESPIDPQSFSFKEPPFMFGVLQPNTKLRQAERLFENQLNG 61

Query: 81  PEDASMDKNGVIYTATRDGWIKRLQDGTWVNWKFIDSQTL------------VGLTSTKE 128
           PE + ++   V++T T DG + +L++G         S               +G+     
Sbjct: 62  PE-SIVNIGDVLFTGTADGRVVKLENGEIETIARFGSGPCKTRDDEPTCGRPLGIRVGPN 120

Query: 129 GHLIICDNANGLHKVS--EDGVENFLSY---VNGSKLRFANDVVEASDG-SLYFTVSSSK 182
           G L + D   GL +V+  +  V+  LS    + G K+ F ND+    DG  +YFT SSSK
Sbjct: 121 GTLFVVDAYKGLFEVNPQKRSVKLLLSSETPIEGKKMSFVNDLTITRDGRKIYFTDSSSK 180

Query: 183 YLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFR 242
           +   +Y L ++EG   G+LL+YD  +    ++ D   F NGV LS +ED+V+V E+   R
Sbjct: 181 WQRRDYLLLVMEGTDDGRLLEYDTVTKEVKVLLDQLQFPNGVQLSPEEDFVLVAETAMAR 240

Query: 243 CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDAR----RMKILNSSKL 298
            R+ ++ G  KG  + F EN+PG PDNI  +  G +W+A   + A      +  L+    
Sbjct: 241 IRRVYVSGLMKGGADMFVENMPGFPDNIRPSSSGGYWVAAATIRANPGFSMLDFLSDKPF 300

Query: 299 IKHVLAAYPKLFSQFITLGGGAH---LIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNH 355
           IK ++    KLFSQ   +        ++ V++ G   R+L DP GQ++++V+   + D +
Sbjct: 301 IKRMIF---KLFSQETVMKFVPRYSLVLEVSDSGAFRRSLHDPDGQVVTYVSEAHEHDGY 357

Query: 356 LYVISLTSNFIGKVQL 371
           LY+ S  S FI ++ L
Sbjct: 358 LYLGSFRSPFICRLSL 373

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate. May play a role in adipocyte differentiation.
Rattus norvegicus (taxid: 10116)

>sp|Q3T0E5|APMAP_BOVIN Adipocyte plasma membrane-associated protein OS=Bos taurus GN=APMAP PE=2 SV=1

 Score =  147 bits (371), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 110/372 (29%), Positives = 189/372 (50%), Gaps = 36/372 (9%)

Query: 30  GFLLVCLIAFLLQIVYFSPISPVLDEVPQPAVL-----SATQLQDFIKVGEGSVNHPEDA 84
            FL + L+  L  ++  SPI P      +P +        T+LQ   ++ E  +  PE  
Sbjct: 47  AFLTIPLLGAL--VLLDSPIDPEPLSFKEPPLFLGVLQPNTKLQQAERLFENQLVGPESI 104

Query: 85  SMDKNGVIYTATRDGWIKRLQDG---TWVNW-----KFIDSQTL----VGLTSTKEGHLI 132
           + +   V++T T DG + +L++G   T   +     K  D +      +G+ +   G L 
Sbjct: 105 A-NIGDVMFTGTADGRVVKLENGEVETIARFGSGPCKTRDDEPACGRPLGIRAGPNGTLF 163

Query: 133 ICDNANGLHKVS--EDGVENFLSY---VNGSKLRFANDVVEASDG-SLYFTVSSSKYLPH 186
           + D   GL +V+  +  V+  LS    + G K+ F ND+    DG  +YFT SSSK+   
Sbjct: 164 VVDAYKGLFEVNPWKREVKLLLSSETPIEGRKMSFLNDLTVTRDGRKIYFTDSSSKWQRR 223

Query: 187 EYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKY 246
           +Y L ++EG   G+LL+YD  +    ++ D   F NGV LS  ED+V+V E    R R++
Sbjct: 224 DYLLLLMEGTDDGRLLEYDTQTKEVKVLLDHLRFPNGVQLSPAEDFVLVVELAMVRIRRF 283

Query: 247 WLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDAR----RMKILNSSKLIKHV 302
           ++ G  KG  + F ENLPG PDNI  +  G +W+++  + A      +  L+    +K V
Sbjct: 284 YVSGLMKGGADVFVENLPGFPDNIRASSSGGYWVSMAAIRANPGFSMLDFLSERPFLKKV 343

Query: 303 LAAYPKLFSQFITLGGGAH---LIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVI 359
           +    KLFSQ   +        ++ +++ GT +R+L DP GQ++++V+   +   HLY+ 
Sbjct: 344 IF---KLFSQETVMKFVPRYSLVLELSDSGTFLRSLHDPEGQVVTYVSEAHEHSGHLYLG 400

Query: 360 SLTSNFIGKVQL 371
           S  + ++ +++L
Sbjct: 401 SFRAPYLCRLRL 412

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate. May play a role in adipocyte differentiation.

Bos taurus (taxid: 9913)

>sp|Q9D7N9|APMAP_MOUSE Adipocyte plasma membrane-associated protein OS=Mus musculus GN=Apmap PE=1 SV=1

 Score =  147 bits (370), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 116/395 (29%), Positives = 196/395 (49%), Gaps = 39/395 (9%)

Query: 9   PETSKKGRTSSKLFVPACYSFGFLLVCLIAFLL--QIVYFSPISPVLDEVPQPAVL---- 62
           PE  +    S ++F     +F  L V L   LL   ++  SPI P      +P  +    
Sbjct: 25  PEVKEGSSFSGRVF---RMTFLMLAVSLAIPLLGAMMLLESPIDPQSFSFKEPPFMFGVL 81

Query: 63  -SATQLQDFIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQDG---TWVNW-----K 113
              T+L+   ++ E  ++ PE + ++   V++T T DG + +L++G   T   +     K
Sbjct: 82  HPNTKLRQAERLFENQLSGPE-SIVNIGDVLFTGTADGRVVKLENGEIETIARFGSGPCK 140

Query: 114 FIDSQTL----VGLTSTKEGHLIICDNANGLHKVS--EDGVENFLSY---VNGSKLRFAN 164
             D +      +G+ +   G L + D   GL +V+  +  V+  LS    + G K+ F N
Sbjct: 141 TRDDEPTCGRPLGIRAGPNGTLFVVDAYKGLFEVNPQKRSVKLLLSSETPIEGKKMSFVN 200

Query: 165 DVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANG 223
           D+    DG  +YFT SSSK+   +Y L ++E    G+LL+YD  +    ++ D   F NG
Sbjct: 201 DLTVTRDGRKIYFTDSSSKWQRRDYLLLVMEATDDGRLLEYDTVTKEVKVLLDQLQFPNG 260

Query: 224 VALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII 283
           V LS +ED+V+V E+   R R+ ++ G  KG  + F EN+PG PDNI  +  G +W+A  
Sbjct: 261 VQLSPEEDFVLVAETTMARIRRVYVSGLMKGGADMFVENMPGFPDNIRPSSSGGYWVAAA 320

Query: 284 KLDAR----RMKILNSSKLIKHVLAAYPKLFSQFITLGGGAH---LIHVAEDGTIIRNLV 336
            + A      +  L+    IK ++    K+FSQ   +        ++ V++ G   R+L 
Sbjct: 321 TIRANPGFSMLDFLSDKPFIKRMIF---KMFSQETVMKFVPRYSLVLEVSDSGAFRRSLH 377

Query: 337 DPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 371
           DP GQ++++V+   + D +LY+ S  S FI ++ L
Sbjct: 378 DPDGQVVTYVSEAHEHDGYLYLGSFRSPFICRLSL 412

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate (By similarity). May play a role in adipocyte differentiation.

Mus musculus (taxid: 10090)

>sp|Q5ZIF1|APMAP_CHICK Adipocyte plasma membrane-associated protein OS=Gallus gallus GN=APMAP PE=2 SV=1

 Score =  139 bits (350), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 116/401 (28%), Positives = 194/401 (48%), Gaps = 40/401 (9%)

Query: 4   TRKTEPETSKKGRT-SSKLFVPACYSFGFLLVCLIAFLL--QIVYFSPISPVLDEVPQPA 60
           T  +  + +K+G   SSK+F     +F  L   L   LL   ++   PI P    + +P 
Sbjct: 19  TEDSPAQEAKEGSAYSSKVF---RVTFLTLAASLAVPLLGATVLLDCPIDPQPISLKEPP 75

Query: 61  VLSAT-----QLQDFIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQDGTWVNWKFI 115
           +L+       +LQ   ++ E  +  PE + ++   V++T T DG I +++DG       I
Sbjct: 76  LLTGVLEPNNKLQKAERLWENQLVGPE-SIVNIGDVLFTGTADGKILKIEDGEVQTVARI 134

Query: 116 ---------DSQTL---VGLTSTKEGHLIICDNANGLHKVSEDGVENFL-----SYVNGS 158
                    D  T    +G+       L + D   GL++V+    E  +     + + G 
Sbjct: 135 GHGPCGTPEDEPTCGRPLGIRVGPNNTLFVADAYYGLYEVNPGTGETKMLVSTKTLIEGQ 194

Query: 159 KLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG 217
           KL F ND+    DG  +YFT SSSK+   ++   ++EG   G+LL+YD  +    ++  G
Sbjct: 195 KLSFLNDLTVTQDGRKIYFTDSSSKWQRRDFLFLVMEGTDDGRLLEYDTVTKEVKVLMVG 254

Query: 218 FYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT 277
             F NGV LS  ED+V+V E+   R R+Y++ G  KG  + F EN+PG PDNI L+  G 
Sbjct: 255 LRFPNGVQLSPAEDFVLVLETAMARIRRYYVSGLMKGGADMFVENMPGLPDNIRLSSSGG 314

Query: 278 FWIAIIKLDAR----RMKILNSSKLIKHVLAAYPKLFSQFIT---LGGGAHLIHVAEDGT 330
           +W+A+  +        +  L+    IK ++    KL SQ      L   + ++ ++E G+
Sbjct: 315 YWVAMPVVRPNPGFSMLDFLSEKPWIKRMIF---KLLSQETVTKLLPKRSLVVELSETGS 371

Query: 331 IIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 371
             R+  DPTG  + +V+   + + +LY+ S  S FI ++ L
Sbjct: 372 YRRSFHDPTGLTVPYVSEAHEHNGYLYLGSFRSPFICRLNL 412

Gallus gallus (taxid: 9031)

>sp|B5X3B2|APMAP_SALSA Adipocyte plasma membrane-associated protein OS=Salmo salar GN=apmap PE=2 SV=1

 Score =  136 bits (343), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 106/359 (29%), Positives = 176/359 (49%), Gaps = 39/359 (10%)

Query: 47  SPISPVLDEVPQPAVLSAT-----QLQDFIKVGEGSVNHPEDASMDKNGVIYTATRDGWI 101
           SPI P L  + +P ++S       +L++  ++ E  +  PE  + +   +IYT T DG I
Sbjct: 62  SPIHPELLSLSEPPLMSGCYEPNFKLREAQRLFEDQLVGPESIA-NFGDLIYTGTADGKI 120

Query: 102 KRLQ---------------DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSE- 145
            +++               DG+    +       +G+     G L + D   GL KV+  
Sbjct: 121 VKIEGKSITVIARLGKPPCDGS--REQEPSCGRPLGIRVGPNGTLFVADAYLGLFKVNPV 178

Query: 146 -DGVENFLS---YVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQ 200
              V N +S    V G +L F ND+    DG  +YFT SSS++   +Y   I+E    G+
Sbjct: 179 TGEVTNLVSAGQMVGGRRLSFVNDLDVTQDGRKVYFTDSSSRWQRRDYLHLIMEATADGR 238

Query: 201 LLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFA 260
           +L+YD  +   T++ +   FANG+ L  DE+ V+V E+   R R+  + G  KG ++TF 
Sbjct: 239 VLEYDTETKEVTVLMENLRFANGIQLFPDEESVLVAETTMARIRRVHVSGLNKGGMDTFV 298

Query: 261 ENLPGAPDNINLAPDGTFWIAIIKLDAR----RMKILNSSKLIKHVLAAYPKLFSQFITL 316
           +NLPG PDNI  +  G +W+A+  +        +  L+    IK ++    KLFSQ + +
Sbjct: 299 DNLPGFPDNIRRSSSGGYWVAMSAVRPNPGFSMLDFLSQKPWIKKLIF---KLFSQDVLM 355

Query: 317 GGGAH---LIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQLS 372
                   +I + E G  +R+  DP G + ++V+   + D HLY+ S  S ++ K+ LS
Sbjct: 356 KFVPRYSLVIELQESGACMRSFHDPHGMVAAYVSEAHEHDGHLYLGSFRSPYLCKLDLS 414

Salmo salar (taxid: 8030)

>sp|Q9HDC9|APMAP_HUMAN Adipocyte plasma membrane-associated protein OS=Homo sapiens GN=APMAP PE=1 SV=2

 Score =  135 bits (341), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 113/395 (28%), Positives = 191/395 (48%), Gaps = 39/395 (9%)

Query: 9   PETSKKGRTSSKLFVPACYSFGFLLVCLIAFLL--QIVYFSPISPVLDEVPQPAVL---- 62
           PE       S ++F     +F  L V L   LL   ++  SPI P      +P +L    
Sbjct: 26  PEAKDGSSFSGRVF---RVTFLMLAVSLTVPLLGAMMLLESPIDPQPLSFKEPPLLLGVL 82

Query: 63  -SATQLQDFIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQDG---TWVNW-----K 113
              T+L+   ++ E  +  PE  +   + V++T T DG + +L++G   T   +     K
Sbjct: 83  HPNTKLRQAERLFENQLVGPESIAHIGD-VMFTGTADGRVVKLENGEIETIARFGSGPCK 141

Query: 114 FIDSQTL----VGLTSTKEGHLIICDNANGLHKVS--EDGVENFLSY---VNGSKLRFAN 164
             D + +    +G+ +   G L + D   GL +V+  +  V+  LS    + G  + F N
Sbjct: 142 TRDDEPVCGRPLGIRAGPNGTLFVADAYKGLFEVNPWKREVKLLLSSETPIEGKNMSFVN 201

Query: 165 DVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANG 223
           D+    DG  +YFT SSSK+   +Y L ++EG   G+LL+YD  +    ++ D   F NG
Sbjct: 202 DLTVTQDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTREVKVLLDQLRFPNG 261

Query: 224 VALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII 283
           V LS  ED+V+V E+   R R+ ++ G  KG  + F EN+PG PDNI  +  G +W+ + 
Sbjct: 262 VQLSPAEDFVLVAETTMARIRRVYVSGLMKGGADLFVENMPGFPDNIRPSSSGGYWVGMS 321

Query: 284 KLDAR----RMKILNSSKLIKHVLAAYPKLFSQFITLGGGAH---LIHVAEDGTIIRNLV 336
            +        +  L+    IK ++    KLFSQ   +        ++ +++ G   R+L 
Sbjct: 322 TIRPNPGFSMLDFLSERPWIKRMIF---KLFSQETVMKFVPRYSLVLELSDSGAFRRSLH 378

Query: 337 DPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 371
           DP G + ++++   + D HLY+ S  S F+ ++ L
Sbjct: 379 DPDGLVATYISEVHEHDGHLYLGSFRSPFLCRLSL 413

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate. May play a role in adipocyte differentiation.

Homo sapiens (taxid: 9606)

>sp|Q803F5|APMAP_DANRE Adipocyte plasma membrane-associated protein OS=Danio rerio GN=apmap PE=2 SV=1

 Score =  117 bits (294), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 95/356 (26%), Positives = 168/356 (47%), Gaps = 34/356 (9%)

Query: 47  SPISPVLDEVPQPAVLSAT-----QLQDFIKVGEGSVNHPEDASMDKNGVIYTATRDGWI 101
           SPI P +  + +P +++       +L+   ++ E  +  PE  + +   V YT T DG I
Sbjct: 62  SPIQPEVFSLNEPPLMTGCYEPNLKLRQAERLFEERLVGPESLA-NIGDVFYTGTADGKI 120

Query: 102 KRLQDGTWVNWKFIDSQTL------------VGLTSTKEGHLIICDNANGLHKVSE--DG 147
            +++         I                 +G+     G L + D   GL +V+     
Sbjct: 121 VKIEGRNIHVLATIGKPPCGSREHEHTCGRPLGIRVGPNGTLFVADAYLGLFEVNPVTGE 180

Query: 148 VENFLS---YVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLK 203
           V++ +S    + G +L F ND+    DG  +YFT SSS++   ++   I+E    G++L+
Sbjct: 181 VKSLVSTEKRIAGRRLGFVNDLDVTQDGKKVYFTDSSSRWQRRDFMHLIMEATADGRVLE 240

Query: 204 YDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENL 263
           YD  +    ++ +   F NG+ L  DE+ V+V E+   R ++  + G  KG ++TF ENL
Sbjct: 241 YDTETKEVNVMMENLRFPNGIQLFPDEESVLVAETTMARIKRVHVSGLNKGGMDTFIENL 300

Query: 264 PGAPDNINLAPDGTFWIAIIKLDAR----RMKILNSSKLIKHVLAAYPKLFSQFITLGGG 319
           PG PDNI  +  G +W+A+  +        +  L+    +K ++    KLFSQ   L   
Sbjct: 301 PGFPDNIRRSSSGGYWVAMSAVRPNPGFSMLDFLSQRPWLKKLIF---KLFSQDTLLKFV 357

Query: 320 AH---LIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQLS 372
                ++ +  DGT +R+  DP G + ++ +   +   HLY+ S  S ++ K+ LS
Sbjct: 358 PRYSLVVELQSDGTCVRSFHDPQGLVSAYSSEAHEYSGHLYLGSFRSPYLCKLDLS 413

Danio rerio (taxid: 7955)

>sp|P94111|STS1_ARATH Strictosidine synthase 1 OS=Arabidopsis thaliana GN=SS1 PE=2 SV=2

 Score = 87.4 bits (215), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 97/186 (52%), Gaps = 11/186 (5%)

Query: 127 KEGHLIICDNANGLHKVSEDG--VENFLSYVNGSKLRFANDV-VEASDGSLYFTVSSSKY 183
           K G L + D   GLH +S  G         V+G   +F + + V+ + G +YFT  SS++
Sbjct: 107 KTGDLYVADAPLGLHVISPAGGLATKITDSVDGKPFKFLDGLDVDPTTGVVYFTSFSSRF 166

Query: 184 LPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRC 243
            P +  + +      G+L KYDPS+ + T++ +G   + G A+S D  +V+V +  K   
Sbjct: 167 SPIQVLIALGLKDATGKLYKYDPSTKVVTVLMEGLSGSAGCAVSSDGSFVLVSQFTKSNI 226

Query: 244 RKYWLKGERKGKLETFAENLPGAPDNIN-LAPDGTFWIA------IIKLDARRMKILNSS 296
           ++YW+KG + G  E F  ++   PDNI  +   G FW+A      I+  +   +K+ ++ 
Sbjct: 227 KRYWIKGPKAGSSEDFTNSVSN-PDNIKRIGSTGNFWVASVVNKIIVPTNPSAVKVNSNG 285

Query: 297 KLIKHV 302
           ++++ +
Sbjct: 286 EVLQTI 291

Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|P92976|STS3_ARATH Strictosidine synthase 3 OS=Arabidopsis thaliana GN=SS3 PE=2 SV=2

 Score = 87.0 bits (214), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 82/163 (50%), Gaps = 5/163 (3%)

Query: 125 STKEGHLIICDNANGLHKVSEDG--VENFLSYVNGSKLRFANDV-VEASDGSLYFTVSSS 181
           +TK G L + D A GLH +   G   +     V G    F + + V+ + G +YFT  SS
Sbjct: 107 NTKTGDLYVADAALGLHVIPRRGGLAKKIADSVGGKPFLFLDGLDVDPTTGVVYFTSFSS 166

Query: 182 KYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKF 241
            + P +    +      G+  KYDPS  + T++ +G   + G A+S D  +V+V +  K 
Sbjct: 167 TFGPRDVLKAVATKDSTGKFFKYDPSKKVVTVLMEGLSGSAGCAVSSDGSFVLVGQFTKS 226

Query: 242 RCRKYWLKGERKGKLETFAENLPGAPDNIN-LAPDGTFWIAII 283
             ++YW+KG + G  E F  ++   PDNI  +   G FW+A +
Sbjct: 227 NIKRYWIKGSKAGTSEDFTNSVSN-PDNIKRIGSTGNFWVASV 268

Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|P18417|STSY_CATRO Strictosidine synthase OS=Catharanthus roseus GN=STR1 PE=1 SV=2

 Score = 65.5 bits (158), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 76/160 (47%), Gaps = 7/160 (4%)

Query: 127 KEGHLIICDNANGLHKVSEDG--VENFLSYVNGSKLRFANDV-VEASDGSLYFT-VSSSK 182
           K   + I D    L  V ++G       + V G   ++   V V+   G +YFT VSS  
Sbjct: 116 KNSQMYIVDGHYHLCVVGKEGGYATQLATSVQGVPFKWLYAVTVDQRTGIVYFTDVSSIH 175

Query: 183 YLPHEYCLDILEGKPH-GQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKF 241
               E   +I+      G+L+KYDPS+  TTL+    +   G  +S D  +VVV E    
Sbjct: 176 DDSPEGVEEIMNTSDRTGRLMKYDPSTKETTLLLKELHVPGGAEISADGSFVVVAEFLSN 235

Query: 242 RCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIA 281
           R  KYWL+G +KG  E F   +P  P NI    DG FW++
Sbjct: 236 RIVKYWLEGPKKGSAE-FLVTIPN-PGNIKRNSDGHFWVS 273

Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis.

Catharanthus roseus (taxid: 4058)

EC: 4

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	372
255550417	356	Adipocyte plasma membrane-associated pro	0.913	0.955	0.552	1e-109
297738547	461	unnamed protein product [Vitis vinifera]	0.967	0.780	0.517	1e-107
225444698	650	PREDICTED: adipocyte plasma membrane-ass	0.967	0.553	0.517	1e-107
225444700	368	PREDICTED: adipocyte plasma membrane-ass	0.948	0.959	0.535	1e-106
225444696	365	PREDICTED: adipocyte plasma membrane-ass	0.908	0.926	0.537	1e-106
297738546	382	unnamed protein product [Vitis vinifera]	0.908	0.884	0.537	1e-105
357450079	372	Adipocyte plasma membrane-associated pro	0.916	0.916	0.528	1e-105
388499476	372	unknown [Medicago truncatula]	0.916	0.916	0.528	1e-104
357450077	352	Adipocyte plasma membrane-associated pro	0.916	0.968	0.518	1e-102
388492006	352	unknown [Medicago truncatula]	0.916	0.968	0.513	1e-101

>gi|255550417|ref|XP_002516259.1| Adipocyte plasma membrane-associated protein, putative [Ricinus communis] gi|223544745|gb|EEF46261.1| Adipocyte plasma membrane-associated protein, putative [Ricinus communis]

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 189/342 (55%), Positives = 258/342 (75%), Gaps = 2/342 (0%)

Query: 32  LLVCLIAFLLQIVYFSPISPVLDEVPQPAVLSAT-QLQDFIKVGEGSVNHPEDASMDKNG 90
           ++VCL+AF+ QI YFSPISP L ++P P  L    QLQ+ IK+GEG +  PED  MDK+G
Sbjct: 12  VVVCLLAFIFQIYYFSPISPDLLQLPAPFFLPPNKQLQEVIKLGEGFIQGPEDVCMDKDG 71

Query: 91  VIYTATRDGWIKRL-QDGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDGVE 149
           V+YTA RD WIKR+ ++G+W NWK IDS  L+G+  +KEG LI+CD   GL KV+EDGV 
Sbjct: 72  VLYTAVRDKWIKRMHKNGSWENWKRIDSDALLGIAPSKEGGLIVCDADTGLLKVTEDGVT 131

Query: 150 NFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN 209
              S VNGSK++FA+D +E+SDG++YF+V S+K+  H + LD+LE +PHGQLLKYDP+SN
Sbjct: 132 VLASEVNGSKIKFADDAIESSDGNIYFSVPSTKFGLHNWYLDVLEARPHGQLLKYDPTSN 191

Query: 210 ITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDN 269
            T+++ DG  F NGVALS +EDY+V CESWKFRC+K+WLKGE KGK ET  +NLPGAPDN
Sbjct: 192 QTSVLLDGLCFPNGVALSWEEDYLVFCESWKFRCQKHWLKGEDKGKTETLIDNLPGAPDN 251

Query: 270 INLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDG 329
           INLAPDG+FWI ++++ A  ++ +++SK  KH++A++PKL      +   A +++VA DG
Sbjct: 252 INLAPDGSFWICLLQVAADGLEFVHTSKASKHLVASFPKLIELVNGVEKNAMVVNVAADG 311

Query: 330 TIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 371
            I R   DP G+++SFVTS ++ D HLY+ SL +NF+GK+ L
Sbjct: 312 KITRKFDDPDGKVVSFVTSAVEFDGHLYLGSLKNNFVGKLPL 353

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738547|emb|CBI27792.3| unnamed protein product [Vitis vinifera]

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 190/367 (51%), Positives = 260/367 (70%), Gaps = 7/367 (1%)

Query: 11  TSKKGRTSSKLFVPACYSFGFLLVCLIAFLLQIVYFSPISPVLDEVPQPAVL----SATQ 66
           T   G   SK  + AC SF   L   +AF LQI +FSPISP    +P  +      ++ +
Sbjct: 95  TGNNGFRPSKHCLQACSSFA--LASTLAFTLQIYFFSPISPDPLHLPHVSATLNYPTSNK 152

Query: 67  LQDFIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRL-QDGTWVNWKFIDSQTLVGLTS 125
           LQ+  K+GEG ++ PED   D  G++YTATRDGWIKRL ++G+W +W+ I   TL+G+T+
Sbjct: 153 LQEVAKIGEGLLDKPEDVCFDGEGILYTATRDGWIKRLHRNGSWEDWRLIGGDTLLGVTT 212

Query: 126 TKEGHLIICDNANGLHKVSEDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLP 185
           T+ G +++CD   GL KV EDGV    S+VNGS++RFA+DV+EASDGSLYF+V+SSK+  
Sbjct: 213 TRTGGIVVCDTQKGLLKVGEDGVSLLTSHVNGSEIRFADDVIEASDGSLYFSVASSKFGL 272

Query: 186 HEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRK 245
           H++ LD+LE KPHGQLLKYDP  N T+++ D   FANGVALS+DED++VVCE+WKFRC K
Sbjct: 273 HDWYLDVLEAKPHGQLLKYDPLLNETSILLDNLAFANGVALSQDEDFLVVCETWKFRCLK 332

Query: 246 YWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAA 305
           YWLKGERKG+ E F +NLPG PDNINLAPDG+FWIA+++L    M  +++SK  KH++A 
Sbjct: 333 YWLKGERKGRTEVFVDNLPGGPDNINLAPDGSFWIALLELSREGMGFVHTSKASKHLVAT 392

Query: 306 YPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNF 365
           +PKL      +   A ++ V  DG +++   DP G +MSFVT+ L+ + HLY+ SL +NF
Sbjct: 393 FPKLLGLVQGMQKKAMVVKVGADGKMMKRFNDPNGSVMSFVTNALEFEEHLYLGSLNTNF 452

Query: 366 IGKVQLS 372
           IGK+ L+
Sbjct: 453 IGKLPLT 459

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444698|ref|XP_002277787.1| PREDICTED: adipocyte plasma membrane-associated protein-like [Vitis vinifera]

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 190/367 (51%), Positives = 260/367 (70%), Gaps = 7/367 (1%)

Query: 11  TSKKGRTSSKLFVPACYSFGFLLVCLIAFLLQIVYFSPISPVLDEVPQPAVL----SATQ 66
           T   G   SK  + AC SF   L   +AF LQI +FSPISP    +P  +      ++ +
Sbjct: 284 TGNNGFRPSKHCLQACSSFA--LASTLAFTLQIYFFSPISPDPLHLPHVSATLNYPTSNK 341

Query: 67  LQDFIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRL-QDGTWVNWKFIDSQTLVGLTS 125
           LQ+  K+GEG ++ PED   D  G++YTATRDGWIKRL ++G+W +W+ I   TL+G+T+
Sbjct: 342 LQEVAKIGEGLLDKPEDVCFDGEGILYTATRDGWIKRLHRNGSWEDWRLIGGDTLLGVTT 401

Query: 126 TKEGHLIICDNANGLHKVSEDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLP 185
           T+ G +++CD   GL KV EDGV    S+VNGS++RFA+DV+EASDGSLYF+V+SSK+  
Sbjct: 402 TRTGGIVVCDTQKGLLKVGEDGVSLLTSHVNGSEIRFADDVIEASDGSLYFSVASSKFGL 461

Query: 186 HEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRK 245
           H++ LD+LE KPHGQLLKYDP  N T+++ D   FANGVALS+DED++VVCE+WKFRC K
Sbjct: 462 HDWYLDVLEAKPHGQLLKYDPLLNETSILLDNLAFANGVALSQDEDFLVVCETWKFRCLK 521

Query: 246 YWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAA 305
           YWLKGERKG+ E F +NLPG PDNINLAPDG+FWIA+++L    M  +++SK  KH++A 
Sbjct: 522 YWLKGERKGRTEVFVDNLPGGPDNINLAPDGSFWIALLELSREGMGFVHTSKASKHLVAT 581

Query: 306 YPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNF 365
           +PKL      +   A ++ V  DG +++   DP G +MSFVT+ L+ + HLY+ SL +NF
Sbjct: 582 FPKLLGLVQGMQKKAMVVKVGADGKMMKRFNDPNGSVMSFVTNALEFEEHLYLGSLNTNF 641

Query: 366 IGKVQLS 372
           IGK+ L+
Sbjct: 642 IGKLPLT 648

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444700|ref|XP_002277807.1| PREDICTED: adipocyte plasma membrane-associated protein [Vitis vinifera] gi|297738548|emb|CBI27793.3| unnamed protein product [Vitis vinifera]

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 195/364 (53%), Positives = 258/364 (70%), Gaps = 11/364 (3%)

Query: 15  GRTSSKLFVPACYSFGFLLVCLIAFLLQIVYFSPISPVLDEVPQPAVLSA------TQLQ 68
           G   SK  +  C SF  +L  ++A  LQI +FSPISP  D +  P V +A       +LQ
Sbjct: 6   GFRPSKQHLQTCSSF--VLASILASTLQIYFFSPISP--DPLHLPPVSAAINLPTNNKLQ 61

Query: 69  DFIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRL-QDGTWVNWKFIDSQTLVGLTSTK 127
           +  K+GEG +N PED   D+ G++YTATRDGWIKRL ++G+W +WK I    L+G+T+ +
Sbjct: 62  EVTKIGEGFLNKPEDLCFDEEGILYTATRDGWIKRLHRNGSWEDWKLIGGYALLGITTAR 121

Query: 128 EGHLIICDNANGLHKVSEDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHE 187
            G + +CD   GL KV EDGV    S+VNGS++RFA+DV+EASDGSLYF+V+SSK+  H 
Sbjct: 122 AGGIFVCDAQKGLLKVGEDGVSFLTSHVNGSEIRFADDVIEASDGSLYFSVASSKFGLHH 181

Query: 188 YCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYW 247
           + LD+LE KPHGQLLKYDP  N T+++ D   F NGVALS+DED++VVCE+WKFRC KYW
Sbjct: 182 WYLDLLEAKPHGQLLKYDPLLNETSIILDNLAFPNGVALSQDEDFLVVCETWKFRCLKYW 241

Query: 248 LKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYP 307
           LKGERKG+ ETF +NLP  PDNINLAPDG+FWIA+IKL +   + +++SK +KH LA +P
Sbjct: 242 LKGERKGRTETFIDNLPNGPDNINLAPDGSFWIALIKLASDGFEFVHASKALKHFLATFP 301

Query: 308 KLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIG 367
           KLF         A ++ VA DG I+    DP G++MSFVTS L+ ++HLY+ SL +NFIG
Sbjct: 302 KLFQLVNGSNEKATVVKVAADGKIVDKFDDPNGKVMSFVTSALEFEDHLYLGSLNTNFIG 361

Query: 368 KVQL 371
           K+ L
Sbjct: 362 KLPL 365

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444696|ref|XP_002277770.1| PREDICTED: adipocyte plasma membrane-associated protein-like [Vitis vinifera]

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 185/344 (53%), Positives = 258/344 (75%), Gaps = 6/344 (1%)

Query: 32  LLVCLIAFLLQIVYFSPISPVLDEVPQP---AVLSATQLQDFIKVGEGSVNHPEDASMDK 88
           +L C++A  LQI  FSPISP L ++PQP   A+L+  +LQ+  K+GEG ++ PED   D 
Sbjct: 21  ILACILASALQIFLFSPISPDLLQLPQPSSAALLTNKKLQEVAKIGEGLLDKPEDVCFDG 80

Query: 89  NGVIYTATRDGWIKRL-QDGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDG 147
            G++YTATRDGWIKRL ++G+W +W+ I   +L+G+T T+ G +I+CD   GL KV EDG
Sbjct: 81  EGILYTATRDGWIKRLHRNGSWEDWRLIGGGSLIGVTPTRTGGIIVCDIEKGLLKVGEDG 140

Query: 148 VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS 207
           V    S+VNGSK++FANDV+EA+DGS+YF+V+S++++   + LD+LE KPHGQLLKYDP 
Sbjct: 141 VSILTSHVNGSKIKFANDVIEAADGSVYFSVASTEFV--NWYLDVLEAKPHGQLLKYDPL 198

Query: 208 SNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAP 267
            N T+++ D   FANGVALS+DED++VVCE+WKFRC KYWL+GERKG+ ETF +NLPG P
Sbjct: 199 LNETSILLDNLAFANGVALSQDEDFLVVCETWKFRCLKYWLEGERKGRTETFIDNLPGGP 258

Query: 268 DNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE 327
           DN+NLAPDG+FWIA+IK+ +   + +++SK +KH+LA +PKLF         A ++ VA 
Sbjct: 259 DNVNLAPDGSFWIALIKVTSDGFEFVHTSKALKHLLATFPKLFQLVKGSHKKASVVKVAA 318

Query: 328 DGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 371
           DG II    DP G+++SFVTS L+ +++LY+ SL +NFIG + L
Sbjct: 319 DGKIIDKFDDPNGKVISFVTSALEFEDYLYLGSLNTNFIGILPL 362

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738546|emb|CBI27791.3| unnamed protein product [Vitis vinifera]

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 185/344 (53%), Positives = 258/344 (75%), Gaps = 6/344 (1%)

Query: 32  LLVCLIAFLLQIVYFSPISPVLDEVPQP---AVLSATQLQDFIKVGEGSVNHPEDASMDK 88
           +L C++A  LQI  FSPISP L ++PQP   A+L+  +LQ+  K+GEG ++ PED   D 
Sbjct: 38  ILACILASALQIFLFSPISPDLLQLPQPSSAALLTNKKLQEVAKIGEGLLDKPEDVCFDG 97

Query: 89  NGVIYTATRDGWIKRL-QDGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDG 147
            G++YTATRDGWIKRL ++G+W +W+ I   +L+G+T T+ G +I+CD   GL KV EDG
Sbjct: 98  EGILYTATRDGWIKRLHRNGSWEDWRLIGGGSLIGVTPTRTGGIIVCDIEKGLLKVGEDG 157

Query: 148 VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS 207
           V    S+VNGSK++FANDV+EA+DGS+YF+V+S++++   + LD+LE KPHGQLLKYDP 
Sbjct: 158 VSILTSHVNGSKIKFANDVIEAADGSVYFSVASTEFV--NWYLDVLEAKPHGQLLKYDPL 215

Query: 208 SNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAP 267
            N T+++ D   FANGVALS+DED++VVCE+WKFRC KYWL+GERKG+ ETF +NLPG P
Sbjct: 216 LNETSILLDNLAFANGVALSQDEDFLVVCETWKFRCLKYWLEGERKGRTETFIDNLPGGP 275

Query: 268 DNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE 327
           DN+NLAPDG+FWIA+IK+ +   + +++SK +KH+LA +PKLF         A ++ VA 
Sbjct: 276 DNVNLAPDGSFWIALIKVTSDGFEFVHTSKALKHLLATFPKLFQLVKGSHKKASVVKVAA 335

Query: 328 DGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 371
           DG II    DP G+++SFVTS L+ +++LY+ SL +NFIG + L
Sbjct: 336 DGKIIDKFDDPNGKVISFVTSALEFEDYLYLGSLNTNFIGILPL 379

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357450079|ref|XP_003595316.1| Adipocyte plasma membrane-associated protein [Medicago truncatula] gi|355484364|gb|AES65567.1| Adipocyte plasma membrane-associated protein [Medicago truncatula]

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 183/346 (52%), Positives = 259/346 (74%), Gaps = 5/346 (1%)

Query: 31  FLLVCLIAFLLQIVYFSPISPVLDEVPQPAVLSA----TQLQDFIKVGEGSVNHPEDASM 86
            +L  L+A  +Q+ YFSPI PV+ E+P  A   +     QLQ+ IK+GEG +  PED  +
Sbjct: 23  LVLASLVALTVQVFYFSPIDPVILEIPSSASSPSSTKNNQLQNVIKLGEGFLKQPEDVCV 82

Query: 87  DKNGVIYTATRDGWIKRL-QDGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSE 145
           DKNGV+YTATRDGWIKR+ ++  W NWK IDS +L+G+T++K+G LI+CD + GL KV+E
Sbjct: 83  DKNGVLYTATRDGWIKRMVRNENWENWKHIDSSSLLGITTSKDGGLIVCDASEGLLKVTE 142

Query: 146 DGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYD 205
           DG    LS VNGS+L FA+DV+EASDG++YF+V S+K+  H++ LD+LE +PHGQLLKY+
Sbjct: 143 DGFSVILSQVNGSQLMFADDVIEASDGNIYFSVGSNKFGLHDWYLDLLEARPHGQLLKYN 202

Query: 206 PSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPG 265
           P+ N T +V D   FANGVALS+DEDYVVVCE+WKFRC ++WLKG   GK + F ENLPG
Sbjct: 203 PTLNETVIVIDNLTFANGVALSKDEDYVVVCETWKFRCVRHWLKGINNGKTDIFIENLPG 262

Query: 266 APDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHV 325
            PDNINLAPDG+FWIA+++L ++R+  +++S + KH+LA++P+L +   +    A +++V
Sbjct: 263 GPDNINLAPDGSFWIALVQLTSKRLGFVHTSIVCKHLLASFPRLINLINSATKSAMVLNV 322

Query: 326 AEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 371
             +G IIR   D  G+++SFVTS ++ ++HLY+ SL S+F+GK+ L
Sbjct: 323 GTEGNIIRKFGDNEGKVISFVTSAVEFEDHLYLGSLNSDFVGKLPL 368

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388499476|gb|AFK37804.1| unknown [Medicago truncatula]

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 183/346 (52%), Positives = 259/346 (74%), Gaps = 5/346 (1%)

Query: 31  FLLVCLIAFLLQIVYFSPISPVLDEVPQPAVLSA----TQLQDFIKVGEGSVNHPEDASM 86
            +L  L+A  +Q+ YFSPI PV+ E+P  A   +     QLQ+ IK+GEG +  PED  +
Sbjct: 23  LVLASLVALTVQVFYFSPIDPVILEIPSSASSPSSTKNNQLQNVIKLGEGFLKQPEDVCV 82

Query: 87  DKNGVIYTATRDGWIKRL-QDGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSE 145
           DKNGV+YTATRDGWIKR+ ++  W NWK IDS +L+G+T++K+G LI+CD + GL KV+E
Sbjct: 83  DKNGVLYTATRDGWIKRMVRNENWENWKHIDSSSLLGITTSKDGGLIVCDASEGLLKVTE 142

Query: 146 DGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYD 205
           DG    LS VNGS+L FA+DV+EASDG++YF+V S+K+  H++ LD+LE +PHGQLLKY+
Sbjct: 143 DGFSVILSQVNGSQLMFADDVIEASDGNIYFSVGSNKFGLHDWYLDLLEARPHGQLLKYN 202

Query: 206 PSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPG 265
           P+ N T +V D   FANGVALS+DEDYVVVCE+WKFRC ++WLKG   GK + F ENLPG
Sbjct: 203 PTLNETVIVIDNLTFANGVALSKDEDYVVVCETWKFRCVRHWLKGIDNGKTDIFIENLPG 262

Query: 266 APDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHV 325
            PDNINLAPDG+FWIA+++L ++R+  +++S + KH+LA++P+L +   +    A +++V
Sbjct: 263 GPDNINLAPDGSFWIALVQLTSKRLGFVHTSIVCKHLLASFPRLINLINSATKSAMVLNV 322

Query: 326 AEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 371
             +G IIR   D  G+++SFVTS ++ ++HLY+ SL S+F+GK+ L
Sbjct: 323 GTEGNIIRKFGDNEGKVISFVTSAVEFEDHLYLGSLNSDFVGKLPL 368

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357450077|ref|XP_003595315.1| Adipocyte plasma membrane-associated protein [Medicago truncatula] gi|355484363|gb|AES65566.1| Adipocyte plasma membrane-associated protein [Medicago truncatula]

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 178/343 (51%), Positives = 251/343 (73%), Gaps = 2/343 (0%)

Query: 31  FLLVCLIAFLLQIVYFSPISPVLDEVP-QPAVLSATQLQDFIKVGEGSVNHPEDASMDKN 89
            +L  L+A  +Q+ YFSPI PV  E+P   +     QLQ  IK+GEG +  PED  +DK+
Sbjct: 7   LVLAALVALTVQVFYFSPIDPVSLEIPFSVSSTKNNQLQSVIKLGEGFLKQPEDVCVDKD 66

Query: 90  GVIYTATRDGWIKRL-QDGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDGV 148
           GV+YTATRDGWIKR+ ++  W NWK IDS +L+G+T++K+G LI+CD   GL KV+EDG 
Sbjct: 67  GVLYTATRDGWIKRMVRNENWENWKHIDSSSLLGITTSKDGGLIVCDTTLGLLKVTEDGF 126

Query: 149 ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS 208
              LS VNGS+L FA+D++EASDG++YF+V S+K+  H + LD+LE +PHGQLL+Y+P S
Sbjct: 127 SVILSQVNGSQLIFADDIIEASDGNIYFSVPSTKFGLHNWYLDVLEARPHGQLLRYNPLS 186

Query: 209 NITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPD 268
           N T +V D   FANGVALS+DEDY+VVCE+WKFRC K+WLKG  KGK E F ENLP  PD
Sbjct: 187 NETVIVLDHLAFANGVALSKDEDYLVVCETWKFRCLKHWLKGINKGKTEIFIENLPAGPD 246

Query: 269 NINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED 328
           NINLAPDG+FWIA+I++ + RM  +++SK+ KH++A +P+L +   ++   A ++ V  +
Sbjct: 247 NINLAPDGSFWIALIQVTSERMGFVHTSKVSKHLVALFPRLVNMINSVTKSAMVVKVTTE 306

Query: 329 GTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 371
           G II+   D  G+ ++FVTS ++ +++LY+ SL ++F+GK  L
Sbjct: 307 GNIIKKFGDNDGKKITFVTSAVEFEDNLYLGSLNTDFVGKFPL 349

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388492006|gb|AFK34069.1| unknown [Medicago truncatula]

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 176/343 (51%), Positives = 251/343 (73%), Gaps = 2/343 (0%)

Query: 31  FLLVCLIAFLLQIVYFSPISPVLDEVP-QPAVLSATQLQDFIKVGEGSVNHPEDASMDKN 89
            +L  L+A  +Q+ YFSPI PV  E+P   +     QLQ  IK+GEG +  PED  +DK+
Sbjct: 7   LVLAALVALTVQVFYFSPIDPVSLEIPFSVSSTKNNQLQSVIKLGEGFLKQPEDVCVDKD 66

Query: 90  GVIYTATRDGWIKRL-QDGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDGV 148
           GV+YTATRDGWIKR+ ++  W NWK +DS +L+G+T++K+G LI+CD   GL KV+EDG 
Sbjct: 67  GVLYTATRDGWIKRMVRNENWENWKHVDSSSLLGITTSKDGGLIVCDTTLGLLKVTEDGF 126

Query: 149 ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS 208
              LS VNGS+L FA+D++EASDG++YF+V S+K+  H + LD+LE +PHGQLL+Y+P S
Sbjct: 127 SVILSQVNGSQLIFADDIIEASDGNIYFSVPSTKFGLHNWYLDVLEARPHGQLLRYNPLS 186

Query: 209 NITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPD 268
           N T +V D   FANGVALS+DEDY+VVCE+WKFRC K+WLKG  KGK E F ENLP  PD
Sbjct: 187 NETVIVLDHLAFANGVALSKDEDYLVVCETWKFRCLKHWLKGINKGKTEIFIENLPAGPD 246

Query: 269 NINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED 328
           NINLAPDG+FWIA+I++ + RM  +++SK+ K+++A +P+L +   ++   A ++ V  +
Sbjct: 247 NINLAPDGSFWIALIQVTSERMGFVHTSKVSKYLVALFPRLVNMINSVTKSAMVVKVTTE 306

Query: 329 GTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 371
           G II+   D  G+ ++FVTS ++ +++LY+ SL ++F+GK  L
Sbjct: 307 GNIIKKFGDNDGKKITFVTSAVEFEDNLYLGSLNTDFVGKFPL 349

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	372
TAIR|locus:2081830	370	SSL4 "strictosidine synthase-l	0.900	0.905	0.321	1.5e-42
TAIR|locus:2081845	371	YLS2 "YELLOW-LEAF-SPECIFIC GEN	0.916	0.919	0.314	2.2e-41
TAIR|locus:2081860	371	AT3G51440 [Arabidopsis thalian	0.924	0.927	0.319	4.6e-41
UNIPROTKB|E2RPE9	415	APMAP "Uncharacterized protein	0.669	0.6	0.324	5.1e-37
RGD|1308874	376	Apmap "adipocyte plasma membra	0.666	0.659	0.333	5.1e-37
UNIPROTKB|F1LLW3	386	RGD1308874 "Protein RGD1308874	0.666	0.642	0.333	5.1e-37
UNIPROTKB|Q3T0E5	412	APMAP "Adipocyte plasma membra	0.666	0.601	0.321	1e-36
TAIR|locus:2081875	371	AT3G51450 [Arabidopsis thalian	0.782	0.784	0.324	1.3e-36
MGI|MGI:1919131	415	Apmap "adipocyte plasma membra	0.666	0.597	0.325	1.7e-36
UNIPROTKB|Q5ZIF1	415	APMAP "Adipocyte plasma membra	0.666	0.597	0.321	8.1e-35

TAIR|locus:2081830 SSL4 "strictosidine synthase-like 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
 Identities = 115/358 (32%), Positives = 183/358 (51%)

Query:    29 FGFLLVCLIAFLL-QIVYFSPISPVLDEV---PQ--PAVLSATQLQDFIKVGEGSVNHPE 82
             F     CLI+  L Q+  F P S   D +   P   P +L+   L     +G G +N+PE
Sbjct:    12 FSIFFPCLISITLYQLDSFEPASLPADSLITSPTSIPPLLNDRFLTGAEFIGVGLLNNPE 71

Query:    83 DASMDKNG-VIYTATRDGWIKRLQ------DGTWVNWKFIDSQTLVGLTSTKEGHLIICD 135
             D +  K+  +IYT   DGW+KR+       D    +W     + L G+     G +I+ D
Sbjct:    72 DIAYHKDSNLIYTGCVDGWVKRVSVHDSANDSIVEDWVNTGGRPL-GIAFGLHGEVIVAD 130

Query:   136 NANGLHKVSEDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDIL 193
                GL  +S+ G   E      +G + +  + V  A +G LYFT +SSKY  +++  D L
Sbjct:   131 ANKGLLSISDGGKKTELLTDEADGVRFKLTDAVTVADNGVLYFTDASSKYDFYQFIFDFL 190

Query:   194 EGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERK 253
             EGKPHG+++ +DP++  T ++    YFANG+++S D+ + V CE+   RC KY++  ER 
Sbjct:   191 EGKPHGRVMSFDPTTRATRVLLKDLYFANGISMSPDQTHFVFCETIMRRCSKYYISEER- 249

Query:   254 GKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQF 313
               +E F + LPG PDNI    DG +WIA+I       K+      ++ ++    K   + 
Sbjct:   250 --VEVFIQGLPGYPDNIRYDGDGHYWIALISEVTTSWKLSMKYLFLRKLIYMAAKYGVEL 307

Query:   314 ITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 371
             +++   A ++ V  DG  I    D      S +TSG+++ NHLY  SL  ++I ++ L
Sbjct:   308 LSIKNAA-VLQVDLDGNPIAMYHDHP---FSHITSGVKIGNHLYFGSLLHSYITRLDL 361

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

TAIR|locus:2081845 YLS2 "YELLOW-LEAF-SPECIFIC GENE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 439 (159.6 bits), Expect = 2.2e-41, P = 2.2e-41
 Identities = 116/369 (31%), Positives = 189/369 (51%)

Query:    21 LFVPACYSFGFLLVCLIAF--LLQIVYFSPISPVLDEVPQ------PAVLSATQLQDFIK 72
             +F  + + F F +V L+    L Q+  F P +PV  E         P ++S   L     
Sbjct:     3 MFYSSRFLFFFTIVPLLVSIALYQLDTFDP-APVPSEAYASSTTSIPPLISDKYLTGAEF 61

Query:    73 VGEGSVNHPEDAS--MDKNGVIYTATRDGWIKRLQ------DGTWVNWKFIDSQTLVGLT 124
             +G G ++ PED +   D N +IYT   DGW+KR+       D    +W     + L G+ 
Sbjct:    62 IGVGLLDKPEDIAYHQDSN-LIYTGCIDGWVKRVSVHDSANDSVVEDWVNTGGRPL-GIA 119

Query:   125 STKEGHLIICDNANGLHKVSEDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSK 182
                 G +I+ D   GL  +S DG   E       G K +  + V  A +G LYFT +S K
Sbjct:   120 FGVHGEVIVADAYKGLLNISGDGKKTELLTDQAEGVKFKLTDVVAVADNGVLYFTDASYK 179

Query:   183 YLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFR 242
             Y  H+   DILEGKPHG+L+ +DP++ +T ++    YFANGV++S D+ +++ CE+   R
Sbjct:   180 YTLHQVKFDILEGKPHGRLMSFDPTTRVTRVLLKDLYFANGVSMSPDQTHLIFCETPMRR 239

Query:   243 CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHV 302
             C KY++  ER   +E F + LPG PDNI    DG +WIA++   +   ++      ++ +
Sbjct:   240 CSKYYINEER---VEVFIQGLPGYPDNIRYDGDGHYWIAMVSGASTLWRLSMKYPFLRKI 296

Query:   303 LAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLT 362
              A   K   + + +   A ++ V  DG  I    D   Q +S +T+G+++ N+LY  ++ 
Sbjct:   297 TAIAAKYGVELMFMKN-AGVLQVDLDGNPIAYYHD---QRLSHITTGIKIGNYLYCGNIL 352

Query:   363 SNFIGKVQL 371
              ++I ++ L
Sbjct:   353 HSYIIRLDL 361

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2081860 AT3G51440 [Arabidopsis thaliana (taxid:3702)]

 Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
 Identities = 117/366 (31%), Positives = 189/366 (51%)

Query:    21 LFVPACYSFGFLLV-CLIAFLL-QIVYFSPISPVLDEVPQ-----PAVLSATQLQDFIKV 73
             +F+ + + F  ++V  LI+  L Q+  F P     D +       P +++   L     +
Sbjct:     3 VFLSSRFLFFCIIVPLLISITLYQLDTFDPAHHPADSLISSTASIPPLINERFLTGAEFI 62

Query:    74 GEGSVNHPED-ASMDKNGVIYTATRDGWIKRLQDGTWVNWKFIDSQTL-----VGLTSTK 127
             G G +N PED A  + +G IYT   DGW+KR++    VN   ++         +G+    
Sbjct:    63 GVGLLNSPEDIAYHEDSGFIYTGCVDGWVKRVKVAESVNDSLVEDLVNTGGRPLGIAFGI 122

Query:   128 EGHLIICDNANGLHKVSEDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLP 185
              G +I+ D   GL  +S DG   E      +G + +  + V  A +G LYFT  S KY  
Sbjct:   123 HGEVIVADAYKGLLNISGDGKKTELLTEEADGVRFKLPDAVTVADNGVLYFTDGSYKYNL 182

Query:   186 HEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRK 245
             H++  DILEGKPHG+L+ +DP++ +T ++    YFANGV+LS D+ ++V CE+   RC K
Sbjct:   183 HQFSFDILEGKPHGRLMSFDPTTKVTRVLLRDLYFANGVSLSPDQTHLVFCETPIRRCSK 242

Query:   246 YWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAA 305
             Y++ G   G++E F + LPG PDNI    DG +WIA+        K+      ++ + A 
Sbjct:   243 YYING---GRVELFIQGLPGYPDNIRYDGDGHYWIAMPSGVTTLWKLSMKYPFLRKITAM 299

Query:   306 YPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNF 365
               K   + + +   A ++ V  DG  I    D   Q +S +T+G+++ N+LY  SL  + 
Sbjct:   300 AAKYGYEPMFMEN-AGVLQVDLDGNPIAYYHD---QALSHITTGVKIGNYLYCGSLWHSH 355

Query:   366 IGKVQL 371
             I ++ L
Sbjct:   356 ILRLDL 361

GO:0005576 "extracellular region" evidence=ISM

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

UNIPROTKB|E2RPE9 APMAP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 348 (127.6 bits), Expect = 5.1e-37, Sum P(2) = 5.1e-37
 Identities = 86/265 (32%), Positives = 143/265 (53%)

Query:   120 LVGLTSTKEGHLIICDNANGLHKVS--EDGVENFLSY---VNGSKLRFANDVVEASDGS- 173
             L+G+ +   G L + D   GL +V+  +  V+  +S    + G K+ F ND+    DG  
Sbjct:   151 LLGIRAGPNGTLFVADAYKGLFEVNPWKREVKLLVSSEIPIEGRKMSFVNDLTITQDGKK 210

Query:   174 LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYV 233
             +YFT SSSK+   +Y L ++EG   G+LL+YD  +    ++ D   F NGV LS +ED+V
Sbjct:   211 IYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDMETKEVKVLLDQLRFPNGVQLSPEEDFV 270

Query:   234 VVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDAR----R 289
             +V E+   R R++++ G  KG  + F ENLPG PDNI  +  G +W+ +  + +      
Sbjct:   271 LVAETTMARIRRFYVSGLMKGGADLFVENLPGFPDNIRPSSSGGYWVGMATIRSNPGFSM 330

Query:   290 MKILNSSKLIKHVLAAYPKLFSQFITLGGGAH---LIHVAEDGTIIRNLVDPTGQLMSFV 346
             +  L+    IK ++    KLFSQ   +        ++ ++  G   R+L DPTGQ+ S+V
Sbjct:   331 LDFLSERPYIKRMIF---KLFSQETVMKFVPRYSLVLELSNSGAFRRSLHDPTGQVASYV 387

Query:   347 TSGLQVDNHLYVISLTSNFIGKVQL 371
             +   + + HLY+ S  + F+ ++ L
Sbjct:   388 SEVHEYNGHLYLGSFRAPFLCRLSL 412

GO:0016020 "membrane" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0004064 "arylesterase activity" evidence=IEA

GO:0016844 "strictosidine synthase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

RGD|1308874 Apmap "adipocyte plasma membrane associated protein" [Rattus norvegicus (taxid:10116)]

 Score = 348 (127.6 bits), Expect = 5.1e-37, Sum P(2) = 5.1e-37
 Identities = 88/264 (33%), Positives = 140/264 (53%)

Query:   121 VGLTSTKEGHLIICDNANGLHKVSED--GVENFLSY---VNGSKLRFANDVVEASDG-SL 174
             +G+     G L + D   GL +V+     V+  LS    + G K+ F ND+    DG  +
Sbjct:   113 LGIRVGPNGTLFVVDAYKGLFEVNPQKRSVKLLLSSETPIEGKKMSFVNDLTITRDGRKI 172

Query:   175 YFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVV 234
             YFT SSSK+   +Y L ++EG   G+LL+YD  +    ++ D   F NGV LS +ED+V+
Sbjct:   173 YFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTKEVKVLLDQLQFPNGVQLSPEEDFVL 232

Query:   235 VCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDAR----RM 290
             V E+   R R+ ++ G  KG  + F EN+PG PDNI  +  G +W+A   + A      +
Sbjct:   233 VAETAMARIRRVYVSGLMKGGADMFVENMPGFPDNIRPSSSGGYWVAAATIRANPGFSML 292

Query:   291 KILNSSKLIKHVLAAYPKLFSQFITLGGGAH---LIHVAEDGTIIRNLVDPTGQLMSFVT 347
               L+    IK ++    KLFSQ   +        ++ V++ G   R+L DP GQ++++V+
Sbjct:   293 DFLSDKPFIKRMIF---KLFSQETVMKFVPRYSLVLEVSDSGAFRRSLHDPDGQVVTYVS 349

Query:   348 SGLQVDNHLYVISLTSNFIGKVQL 371
                + D +LY+ S  S FI ++ L
Sbjct:   350 EAHEHDGYLYLGSFRSPFICRLSL 373

GO:0004064 "arylesterase activity" evidence=ISO

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009986 "cell surface" evidence=ISO

GO:0016020 "membrane" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0016844 "strictosidine synthase activity" evidence=IEA

UNIPROTKB|F1LLW3 RGD1308874 "Protein RGD1308874" [Rattus norvegicus (taxid:10116)]

 Score = 348 (127.6 bits), Expect = 5.1e-37, Sum P(2) = 5.1e-37
 Identities = 88/264 (33%), Positives = 140/264 (53%)

Query:   121 VGLTSTKEGHLIICDNANGLHKVSED--GVENFLSY---VNGSKLRFANDVVEASDG-SL 174
             +G+     G L + D   GL +V+     V+  LS    + G K+ F ND+    DG  +
Sbjct:   123 LGIRVGPNGTLFVVDAYKGLFEVNPQKRSVKLLLSSETPIEGKKMSFVNDLTITRDGRKI 182

Query:   175 YFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVV 234
             YFT SSSK+   +Y L ++EG   G+LL+YD  +    ++ D   F NGV LS +ED+V+
Sbjct:   183 YFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTKEVKVLLDQLQFPNGVQLSPEEDFVL 242

Query:   235 VCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDAR----RM 290
             V E+   R R+ ++ G  KG  + F EN+PG PDNI  +  G +W+A   + A      +
Sbjct:   243 VAETAMARIRRVYVSGLMKGGADMFVENMPGFPDNIRPSSSGGYWVAAATIRANPGFSML 302

Query:   291 KILNSSKLIKHVLAAYPKLFSQFITLGGGAH---LIHVAEDGTIIRNLVDPTGQLMSFVT 347
               L+    IK ++    KLFSQ   +        ++ V++ G   R+L DP GQ++++V+
Sbjct:   303 DFLSDKPFIKRMIF---KLFSQETVMKFVPRYSLVLEVSDSGAFRRSLHDPDGQVVTYVS 359

Query:   348 SGLQVDNHLYVISLTSNFIGKVQL 371
                + D +LY+ S  S FI ++ L
Sbjct:   360 EAHEHDGYLYLGSFRSPFICRLSL 383

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016844 "strictosidine synthase activity" evidence=IEA

UNIPROTKB|Q3T0E5 APMAP "Adipocyte plasma membrane-associated protein" [Bos taurus (taxid:9913)]

 Score = 348 (127.6 bits), Expect = 1.0e-36, Sum P(2) = 1.0e-36
 Identities = 85/264 (32%), Positives = 144/264 (54%)

Query:   121 VGLTSTKEGHLIICDNANGLHKVS--EDGVENFLSY---VNGSKLRFANDVVEASDG-SL 174
             +G+ +   G L + D   GL +V+  +  V+  LS    + G K+ F ND+    DG  +
Sbjct:   152 LGIRAGPNGTLFVVDAYKGLFEVNPWKREVKLLLSSETPIEGRKMSFLNDLTVTRDGRKI 211

Query:   175 YFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVV 234
             YFT SSSK+   +Y L ++EG   G+LL+YD  +    ++ D   F NGV LS  ED+V+
Sbjct:   212 YFTDSSSKWQRRDYLLLLMEGTDDGRLLEYDTQTKEVKVLLDHLRFPNGVQLSPAEDFVL 271

Query:   235 VCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDAR----RM 290
             V E    R R++++ G  KG  + F ENLPG PDNI  +  G +W+++  + A      +
Sbjct:   272 VVELAMVRIRRFYVSGLMKGGADVFVENLPGFPDNIRASSSGGYWVSMAAIRANPGFSML 331

Query:   291 KILNSSKLIKHVLAAYPKLFSQFITLGGGAH---LIHVAEDGTIIRNLVDPTGQLMSFVT 347
               L+    +K V+    KLFSQ   +        ++ +++ GT +R+L DP GQ++++V+
Sbjct:   332 DFLSERPFLKKVIF---KLFSQETVMKFVPRYSLVLELSDSGTFLRSLHDPEGQVVTYVS 388

Query:   348 SGLQVDNHLYVISLTSNFIGKVQL 371
                +   HLY+ S  + ++ +++L
Sbjct:   389 EAHEHSGHLYLGSFRAPYLCRLRL 412

GO:0009986 "cell surface" evidence=IEA

GO:0004064 "arylesterase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016844 "strictosidine synthase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

TAIR|locus:2081875 AT3G51450 [Arabidopsis thaliana (taxid:3702)]

 Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 100/308 (32%), Positives = 159/308 (51%)

Query:    73 VGEGSVNHPEDASMDK-NGVIYTATRDGWIKRLQDGTWVN------WKFIDSQTLVGLTS 125
             +G G +N PED +  K + +IYT   DGW+KR++    VN      W     + L G+  
Sbjct:    62 IGVGLLNIPEDIAYHKESNLIYTGCVDGWVKRVKVADSVNDSVVEDWVNTGGRPL-GIAF 120

Query:   126 TKEGHLIICDNANGLHKVSEDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKY 183
                G +I+ D   GL  +S DG   E      +G K +  + V  A +G LYFT +S KY
Sbjct:   121 GIHGEVIVADVHKGLLNISGDGKKTELLTDEADGVKFKLTDAVTVADNGVLYFTDASYKY 180

Query:   184 LPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRC 243
               ++  LD+LEGKP G+LL +DP++ +T ++    YFANG+ +S D+ +++ CE+   RC
Sbjct:   181 TLNQLSLDMLEGKPFGRLLSFDPTTRVTKVLLKDLYFANGITISPDQTHLIFCETPMKRC 240

Query:   244 RKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVL 303
              KY++  ER   +E F ++LPG PDNI    DG +WIA+         I      ++ + 
Sbjct:   241 SKYYISEER---VEVFTQSLPGYPDNIRYDGDGHYWIALPSGVTTLWNISLKYPFLRKLT 297

Query:   304 AAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTS 363
             A   K +   +     A ++ V  DG  I    DP    +S + +  ++  +LY  SL+ 
Sbjct:   298 AMVAK-YGVDLMFMENAGVLQVDLDGNPIAYYHDPK---LSHIATCDKIGKYLYCGSLSQ 353

Query:   364 NFIGKVQL 371
             + I ++ L
Sbjct:   354 SHILRLDL 361

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0009611 "response to wounding" evidence=RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009694 "jasmonic acid metabolic process" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

MGI|MGI:1919131 Apmap "adipocyte plasma membrane associated protein" [Mus musculus (taxid:10090)]

 Score = 345 (126.5 bits), Expect = 1.7e-36, Sum P(2) = 1.7e-36
 Identities = 86/264 (32%), Positives = 140/264 (53%)

Query:   121 VGLTSTKEGHLIICDNANGLHKVSED--GVENFLSY---VNGSKLRFANDVVEASDG-SL 174
             +G+ +   G L + D   GL +V+     V+  LS    + G K+ F ND+    DG  +
Sbjct:   152 LGIRAGPNGTLFVVDAYKGLFEVNPQKRSVKLLLSSETPIEGKKMSFVNDLTVTRDGRKI 211

Query:   175 YFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVV 234
             YFT SSSK+   +Y L ++E    G+LL+YD  +    ++ D   F NGV LS +ED+V+
Sbjct:   212 YFTDSSSKWQRRDYLLLVMEATDDGRLLEYDTVTKEVKVLLDQLQFPNGVQLSPEEDFVL 271

Query:   235 VCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDAR----RM 290
             V E+   R R+ ++ G  KG  + F EN+PG PDNI  +  G +W+A   + A      +
Sbjct:   272 VAETTMARIRRVYVSGLMKGGADMFVENMPGFPDNIRPSSSGGYWVAAATIRANPGFSML 331

Query:   291 KILNSSKLIKHVLAAYPKLFSQFITLGGGAH---LIHVAEDGTIIRNLVDPTGQLMSFVT 347
               L+    IK ++    K+FSQ   +        ++ V++ G   R+L DP GQ++++V+
Sbjct:   332 DFLSDKPFIKRMIF---KMFSQETVMKFVPRYSLVLEVSDSGAFRRSLHDPDGQVVTYVS 388

Query:   348 SGLQVDNHLYVISLTSNFIGKVQL 371
                + D +LY+ S  S FI ++ L
Sbjct:   389 EAHEHDGYLYLGSFRSPFICRLSL 412

GO:0004064 "arylesterase activity" evidence=ISO

GO:0008152 "metabolic process" evidence=ISO

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009986 "cell surface" evidence=ISO

GO:0016020 "membrane" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0016844 "strictosidine synthase activity" evidence=IEA

UNIPROTKB|Q5ZIF1 APMAP "Adipocyte plasma membrane-associated protein" [Gallus gallus (taxid:9031)]

 Score = 326 (119.8 bits), Expect = 8.1e-35, Sum P(2) = 8.1e-35
 Identities = 85/264 (32%), Positives = 141/264 (53%)

Query:   121 VGLTSTKEGHLIICDNANGLHKVSED-GVENFL----SYVNGSKLRFANDVVEASDG-SL 174
             +G+       L + D   GL++V+   G    L    + + G KL F ND+    DG  +
Sbjct:   152 LGIRVGPNNTLFVADAYYGLYEVNPGTGETKMLVSTKTLIEGQKLSFLNDLTVTQDGRKI 211

Query:   175 YFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVV 234
             YFT SSSK+   ++   ++EG   G+LL+YD  +    ++  G  F NGV LS  ED+V+
Sbjct:   212 YFTDSSSKWQRRDFLFLVMEGTDDGRLLEYDTVTKEVKVLMVGLRFPNGVQLSPAEDFVL 271

Query:   235 VCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIA--IIKLDA--RRM 290
             V E+   R R+Y++ G  KG  + F EN+PG PDNI L+  G +W+A  +++ +     +
Sbjct:   272 VLETAMARIRRYYVSGLMKGGADMFVENMPGLPDNIRLSSSGGYWVAMPVVRPNPGFSML 331

Query:   291 KILNSSKLIKHVLAAYPKLFSQ-FIT--LGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVT 347
               L+    IK ++    KL SQ  +T  L   + ++ ++E G+  R+  DPTG  + +V+
Sbjct:   332 DFLSEKPWIKRMIF---KLLSQETVTKLLPKRSLVVELSETGSYRRSFHDPTGLTVPYVS 388

Query:   348 SGLQVDNHLYVISLTSNFIGKVQL 371
                + + +LY+ S  S FI ++ L
Sbjct:   389 EAHEHNGYLYLGSFRSPFICRLNL 412

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016844 "strictosidine synthase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004064 "arylesterase activity" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q7TP48	APMAP_RAT	No assigned EC number	0.3005	0.9139	0.9042	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	372
pfam03088	89	pfam03088, Str_synth, Strictosidine synthase	4e-27
COG3386	307	COG3386, COG3386, Gluconolactonase [Carbohydrate t	2e-24
pfam08450	245	pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like re	2e-12
pfam01731	86	pfam01731, Arylesterase, Arylesterase	0.001

>gnl|CDD|111929 pfam03088, Str_synth, Strictosidine synthase

 Score =  102 bits (256), Expect = 4e-27
 Identities = 38/85 (44%), Positives = 53/85 (62%)

Query: 167 VEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVAL 226
           V+   G LYFT SSS+Y   +    +LEG   G+L+KYDPS+ +T ++    YF NG+AL
Sbjct: 5   VDPETGVLYFTDSSSRYDRRQVIFAMLEGDKTGRLMKYDPSTKVTKVLLKDLYFPNGIAL 64

Query: 227 SRDEDYVVVCESWKFRCRKYWLKGE 251
           S D  +V+ CE+   R  KYW+KG 
Sbjct: 65  SPDGSFVLFCETPMKRISKYWIKGP 89

Strictosidine synthase (E.C. 4.3.3.2) is a key enzyme in alkaloid biosynthesis. It catalyzes the condensation of tryptamine with secologanin to form strictosidine. Length = 89

>gnl|CDD|225921 COG3386, COG3386, Gluconolactonase [Carbohydrate transport and metabolism]

 Score =  101 bits (253), Expect = 2e-24
 Identities = 56/235 (23%), Positives = 85/235 (36%), Gaps = 27/235 (11%)

Query: 56  VPQPAVLSATQLQDFIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQ--DGTWVNWK 113
              P  L          +GEG V  P+        +++     G I RL    G    + 
Sbjct: 13  TAAPVTLLDKGAT----LGEGPVWDPDR-----GALLWVDILGGRIHRLDPETGKKRVFP 63

Query: 114 FIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDG-VENFLSYVNGSKLRFANDVVEASDG 172
                +   L     G LI C++   L      G +       +G  L   ND V   DG
Sbjct: 64  SPGGFSSGALID-AGGRLIACEHGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDG 122

Query: 173 SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDY 232
            ++F           + L   E +P G L + DP   +  L+ D     NG+A S D   
Sbjct: 123 RIWFG------DMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKT 176

Query: 233 VVVCESWKFRCRKYWL------KGERKGKLETFAENLPGAPDNINLAPDGTFWIA 281
           + V ++   R  +Y L       G R+G +    +  PG PD + +  DG  W+A
Sbjct: 177 LYVADTPANRIHRYDLDPATGPIGGRRGFV--DFDEEPGLPDGMAVDADGNLWVA 229

Length = 307

>gnl|CDD|219847 pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like region

 Score = 65.7 bits (161), Expect = 2e-12
 Identities = 50/219 (22%), Positives = 74/219 (33%), Gaps = 28/219 (12%)

Query: 73  VGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH 130
           +GEG V   E+ +     + +     G I RL    G    W        + L    +G 
Sbjct: 1   LGEGPVWDEEEGA-----LYWVDILGGRIHRLDPATGKETVWDLPGPVGAIALR--DDGR 53

Query: 131 LIICDNANGLH--KVSEDGVENFLSYVNG-SKLRFANDVVEASDGSLYFTVSSSKYLPHE 187
           LI+     GL    +    +             RF ND     DG  +F           
Sbjct: 54  LIVA-LKRGLALLDLDTGELTTLADLEPDEPLNRF-NDGKVDPDGRFWFGT--------- 102

Query: 188 YCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKY- 246
              DI  G   G L + DP   +   V DG   +NG+A S D   +   +S   R   + 
Sbjct: 103 MGFDIAPGGEPGALYRLDPDGKVE-RVLDGITISNGLAWSPDGKTLYFADSPTRRIWAFD 161

Query: 247 -WLKGERKGKLETFA--ENLPGAPDNINLAPDGTFWIAI 282
               G        FA  ++  G PD + +  +G  W+A 
Sbjct: 162 YDADGGLISNRRVFADFKDGDGEPDGMAVDAEGNVWVAR 200

This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30), gluconolactonase and luciferin-regenerating enzyme (LRE). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 and LRE. Length = 245

>gnl|CDD|190082 pfam01731, Arylesterase, Arylesterase

 Score = 37.4 bits (87), Expect = 0.001
 Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 2/75 (2%)

Query: 164 NDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANG 223
           ND+V     S Y T       P    L++  G     ++ Y PS      VA GF FANG
Sbjct: 1   NDIVAVGPDSFYATNDHYFGDPFLQNLEMYLGLIWTGVVYYSPSEVKV--VASGFSFANG 58

Query: 224 VALSRDEDYVVVCES 238
           +  S D+ Y+ V  S
Sbjct: 59  INYSPDKKYIYVASS 73

This family consists of arylesterases (Also known as serum paraoxonase) EC:3.1.1.2. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity. Human arylesterase (PON1) is associated with HDL and may protect against LDL oxidation. Length = 86

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	372
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	100.0
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.97
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	99.96
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	99.86
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.85
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	99.83
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	99.77
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.71
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	99.67
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	99.66
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.59
PRK11028	330	6-phosphogluconolactonase; Provisional	99.54
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.49
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.45
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.38
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	99.37
PRK11028	330	6-phosphogluconolactonase; Provisional	99.37
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.32
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	99.31
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	99.28
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.28
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	99.25
COG3391	381	Uncharacterized conserved protein [Function unknow	99.23
COG2133	399	Glucose/sorbosone dehydrogenases [Carbohydrate tra	99.2
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.16
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	99.16
COG3391	381	Uncharacterized conserved protein [Function unknow	99.11
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	99.09
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	99.09
COG3292	671	Predicted periplasmic ligand-binding sensor domain	99.08
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.0
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.91
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.83
COG3292	671	Predicted periplasmic ligand-binding sensor domain	98.8
KOG1214	1289	consensus Nidogen and related basement membrane pr	98.77
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.74
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	98.74
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	98.69
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	98.66
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	98.61
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.6
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	98.59
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.59
PRK04922	433	tolB translocation protein TolB; Provisional	98.52
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	98.51
KOG1214	1289	consensus Nidogen and related basement membrane pr	98.5
PRK04792	448	tolB translocation protein TolB; Provisional	98.5
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	98.48
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	98.47
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	98.47
PRK05137	435	tolB translocation protein TolB; Provisional	98.47
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.44
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.44
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.44
PRK03629	429	tolB translocation protein TolB; Provisional	98.43
PRK02889	427	tolB translocation protein TolB; Provisional	98.42
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.41
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.4
PRK00178	430	tolB translocation protein TolB; Provisional	98.36
PRK04792	448	tolB translocation protein TolB; Provisional	98.3
PRK03629	429	tolB translocation protein TolB; Provisional	98.29
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.29
PRK04043	419	tolB translocation protein TolB; Provisional	98.28
PRK05137	435	tolB translocation protein TolB; Provisional	98.28
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.25
PRK02889	427	tolB translocation protein TolB; Provisional	98.25
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	98.21
PRK01742	429	tolB translocation protein TolB; Provisional	98.21
KOG2106	626	consensus Uncharacterized conserved protein, conta	98.2
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	98.18
KOG0318	603	consensus WD40 repeat stress protein/actin interac	98.18
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	98.17
PRK04922	433	tolB translocation protein TolB; Provisional	98.14
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	98.13
PRK04043	419	tolB translocation protein TolB; Provisional	98.13
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.09
PRK00178	430	tolB translocation protein TolB; Provisional	98.02
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.01
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	97.99
KOG0279	315	consensus G protein beta subunit-like protein [Sig	97.98
COG1520	370	FOG: WD40-like repeat [Function unknown]	97.97
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.96
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.95
PRK02888	635	nitrous-oxide reductase; Validated	97.95
PRK01029	428	tolB translocation protein TolB; Provisional	97.92
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	97.91
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	97.9
KOG1274	933	consensus WD40 repeat protein [General function pr	97.89
KOG0289	506	consensus mRNA splicing factor [General function p	97.88
KOG0266	456	consensus WD40 repeat-containing protein [General	97.88
KOG0294	362	consensus WD40 repeat-containing protein [Function	97.85
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.85
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	97.82
KOG0266	456	consensus WD40 repeat-containing protein [General	97.81
KOG0286	343	consensus G-protein beta subunit [General function	97.79
COG2133	399	Glucose/sorbosone dehydrogenases [Carbohydrate tra	97.77
KOG0315	311	consensus G-protein beta subunit-like protein (con	97.77
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	97.73
PRK13684	334	Ycf48-like protein; Provisional	97.73
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	97.7
KOG2139	445	consensus WD40 repeat protein [General function pr	97.69
PRK01742	429	tolB translocation protein TolB; Provisional	97.67
KOG0318	603	consensus WD40 repeat stress protein/actin interac	97.66
KOG2055	514	consensus WD40 repeat protein [General function pr	97.65
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.61
KOG0282	503	consensus mRNA splicing factor [Function unknown]	97.58
KOG1273	405	consensus WD40 repeat protein [General function pr	97.57
PF13449	326	Phytase-like: Esterase-like activity of phytase	97.55
KOG0315	311	consensus G-protein beta subunit-like protein (con	97.53
KOG0286	343	consensus G-protein beta subunit [General function	97.5
KOG1274	933	consensus WD40 repeat protein [General function pr	97.48
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	97.47
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	97.47
COG4946	668	Uncharacterized protein related to the periplasmic	97.47
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.47
PTZ00421	493	coronin; Provisional	97.47
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.44
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	97.43
KOG2055	514	consensus WD40 repeat protein [General function pr	97.4
PRK01029	428	tolB translocation protein TolB; Provisional	97.38
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	97.37
KOG2106	626	consensus Uncharacterized conserved protein, conta	97.36
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	97.34
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.33
KOG0278	334	consensus Serine/threonine kinase receptor-associa	97.31
PRK13684	334	Ycf48-like protein; Provisional	97.31
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.27
COG4946	668	Uncharacterized protein related to the periplasmic	97.26
PLN00181	793	protein SPA1-RELATED; Provisional	97.19
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	97.15
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	97.14
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	97.13
COG1520	370	FOG: WD40-like repeat [Function unknown]	97.12
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	97.12
COG3211	616	PhoX Predicted phosphatase [General function predi	97.05
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	97.04
KOG0772	641	consensus Uncharacterized conserved protein, conta	97.02
PLN00181	793	protein SPA1-RELATED; Provisional	97.01
KOG0316	307	consensus Conserved WD40 repeat-containing protein	97.01
KOG0263	707	consensus Transcription initiation factor TFIID, s	96.94
PTZ00421	493	coronin; Provisional	96.9
KOG0278	334	consensus Serine/threonine kinase receptor-associa	96.9
PF13449	326	Phytase-like: Esterase-like activity of phytase	96.85
PTZ00420	568	coronin; Provisional	96.84
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	96.84
PRK02888	635	nitrous-oxide reductase; Validated	96.72
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	96.72
KOG0279	315	consensus G protein beta subunit-like protein [Sig	96.69
PLN00033	398	photosystem II stability/assembly factor; Provisio	96.67
PTZ00420	568	coronin; Provisional	96.67
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	96.64
PRK13616	591	lipoprotein LpqB; Provisional	96.62
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	96.61
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	96.6
PF14517	229	Tachylectin: Tachylectin; PDB: 1TL2_A.	96.59
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.57
KOG0293	519	consensus WD40 repeat-containing protein [Function	96.54
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	96.53
KOG0640	430	consensus mRNA cleavage stimulating factor complex	96.48
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	96.47
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	96.45
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	96.43
PRK13616	591	lipoprotein LpqB; Provisional	96.4
KOG0282	503	consensus mRNA splicing factor [Function unknown]	96.39
KOG0289	506	consensus mRNA splicing factor [General function p	96.35
KOG0296	399	consensus Angio-associated migratory cell protein	96.33
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	96.31
COG3211	616	PhoX Predicted phosphatase [General function predi	96.3
KOG0275	508	consensus Conserved WD40 repeat-containing protein	96.29
KOG2048	691	consensus WD40 repeat protein [General function pr	96.24
KOG2096	420	consensus WD40 repeat protein [General function pr	96.24
PLN00033	398	photosystem II stability/assembly factor; Provisio	96.23
PF14517	229	Tachylectin: Tachylectin; PDB: 1TL2_A.	96.23
KOG0263	707	consensus Transcription initiation factor TFIID, s	96.22
KOG1539	910	consensus WD repeat protein [General function pred	96.19
KOG0283	712	consensus WD40 repeat-containing protein [Function	96.19
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.06
KOG2139	445	consensus WD40 repeat protein [General function pr	96.06
KOG0772	641	consensus Uncharacterized conserved protein, conta	96.01
KOG0646	476	consensus WD40 repeat protein [General function pr	95.97
KOG0293	519	consensus WD40 repeat-containing protein [Function	95.97
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	95.94
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	95.94
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	95.85
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	95.82
PHA02713	557	hypothetical protein; Provisional	95.79
KOG0639	705	consensus Transducin-like enhancer of split protei	95.68
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	95.65
KOG2048	691	consensus WD40 repeat protein [General function pr	95.63
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	95.52
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	95.47
KOG0973	942	consensus Histone transcription regulator HIRA, WD	95.42
KOG0646	476	consensus WD40 repeat protein [General function pr	95.38
KOG0275	508	consensus Conserved WD40 repeat-containing protein	95.32
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	95.31
KOG0283	712	consensus WD40 repeat-containing protein [Function	95.3
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	95.24
KOG0288	459	consensus WD40 repeat protein TipD [General functi	95.16
KOG0296	399	consensus Angio-associated migratory cell protein	95.13
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	95.09
KOG2110	391	consensus Uncharacterized conserved protein, conta	95.06
KOG0771	398	consensus Prolactin regulatory element-binding pro	95.06
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	95.05
KOG1273	405	consensus WD40 repeat protein [General function pr	94.96
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	94.95
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	94.92
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	94.9
KOG0284	464	consensus Polyadenylation factor I complex, subuni	94.68
PHA02713	557	hypothetical protein; Provisional	94.68
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	94.6
KOG0303	472	consensus Actin-binding protein Coronin, contains	94.57
KOG1407	313	consensus WD40 repeat protein [Function unknown]	94.56
KOG0639	705	consensus Transducin-like enhancer of split protei	94.54
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	94.45
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	94.39
KOG0640	430	consensus mRNA cleavage stimulating factor complex	94.25
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	94.2
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	94.07
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	94.03
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	93.94
KOG4328	498	consensus WD40 protein [Function unknown]	93.87
KOG1407	313	consensus WD40 repeat protein [Function unknown]	93.83
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	93.78
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	93.77
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	93.77
PF07494	24	Reg_prop: Two component regulator propeller; Inter	93.71
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	93.67
KOG1539	910	consensus WD repeat protein [General function pred	93.67
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	93.66
KOG0641	350	consensus WD40 repeat protein [General function pr	93.63
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	93.3
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	93.19
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	93.18
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	93.12
KOG0310	487	consensus Conserved WD40 repeat-containing protein	93.1
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	92.98
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	92.78
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	92.73
PF07494	24	Reg_prop: Two component regulator propeller; Inter	92.68
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	92.67
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	92.64
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	92.56
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	92.35
KOG3881	412	consensus Uncharacterized conserved protein [Funct	91.85
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	91.43
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	91.4
KOG0310	487	consensus Conserved WD40 repeat-containing protein	91.3
COG5276	370	Uncharacterized conserved protein [Function unknow	90.98
KOG0643	327	consensus Translation initiation factor 3, subunit	90.85
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	90.47
KOG0973	942	consensus Histone transcription regulator HIRA, WD	90.46
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	90.29
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	90.24
PHA02790	480	Kelch-like protein; Provisional	90.23
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	90.2
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	90.19
KOG4547	541	consensus WD40 repeat-containing protein [General	90.15
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	90.1
COG5276	370	Uncharacterized conserved protein [Function unknow	89.94
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	89.9
COG4247	364	Phy 3-phytase (myo-inositol-hexaphosphate 3-phosph	88.81
KOG2321	703	consensus WD40 repeat protein [General function pr	88.66
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	88.64
KOG2315	566	consensus Predicted translation initiation factor	88.44
KOG2321	703	consensus WD40 repeat protein [General function pr	88.18
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	88.08
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	87.99
KOG0316	307	consensus Conserved WD40 repeat-containing protein	87.78
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	87.51
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	87.23
KOG2110	391	consensus Uncharacterized conserved protein, conta	87.1
PHA03098	534	kelch-like protein; Provisional	86.81
KOG1963	792	consensus WD40 repeat protein [General function pr	86.69
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	86.6
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	86.55
KOG0641	350	consensus WD40 repeat protein [General function pr	86.4
PRK10115	686	protease 2; Provisional	86.37
PF06739	38	SBBP: Beta-propeller repeat; InterPro: IPR010620 T	86.26
KOG1215	877	consensus Low-density lipoprotein receptors contai	86.07
PHA02790	480	Kelch-like protein; Provisional	86.05
PHA03098	534	kelch-like protein; Provisional	85.86
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	85.75
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	85.65
PF09826	521	Beta_propel: Beta propeller domain; InterPro: IPR0	85.54
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	85.43
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	85.3
KOG0308	735	consensus Conserved WD40 repeat-containing protein	85.02
KOG0771	398	consensus Prolactin regulatory element-binding pro	84.5
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	84.4
PF14339	236	DUF4394: Domain of unknown function (DUF4394)	84.2
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	83.01
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	82.83
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	82.46
PF06739	38	SBBP: Beta-propeller repeat; InterPro: IPR010620 T	82.4
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	81.7
KOG0288	459	consensus WD40 repeat protein TipD [General functi	80.95

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=100.00  E-value=4.1e-49  Score=353.94  Aligned_cols=310  Identities=31%  Similarity=0.540  Sum_probs=264.8

Q ss_pred             cccccccCceEecCCCCCCCccEEEc-CCCcEEEEecCCeEEEEeC------Cc-----eEEEEecCCCcccCeEEcCCC
Q 017371           62 LSATQLQDFIKVGEGSVNHPEDASMD-KNGVIYTATRDGWIKRLQD------GT-----WVNWKFIDSQTLVGLTSTKEG  129 (372)
Q Consensus        62 ~~~~~l~~~~~~~~g~~~~p~~i~~d-~~G~l~v~~~~g~i~~~~~------g~-----~~~~~~~~~~p~~gl~~d~dG  129 (372)
                      .+++.+...|.+..+....|+.+.+. .+--+|.+...|+|-+.+.      ..     .......||+|+ ||+++..|
T Consensus        48 ~~~~~~~g~E~~~fd~~~~gp~~~v~dg~il~~~g~~~Gwv~~~~~~~s~~~~~~~~~~~~~~e~~CGRPL-Gl~f~~~g  126 (376)
T KOG1520|consen   48 IPNNHLTGPESLLFDPQGGGPYTGVVDGRILKYTGNDDGWVKFADTKDSTNRSQCCDPGSFETEPLCGRPL-GIRFDKKG  126 (376)
T ss_pred             ccccccCChhhheecccCCCceEEEECCceEEEeccCceEEEEEeccccccccccCCCcceecccccCCcc-eEEeccCC
Confidence            44554555555544444444444443 2223677777888777651      11     122235689999 99999777


Q ss_pred             -CEEEEeCCCcEEEEcCC-C-cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeC
Q 017371          130 -HLIICDNANGLHKVSED-G-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDP  206 (372)
Q Consensus       130 -~l~v~~~~~gv~~~~~~-g-~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~  206 (372)
                       +|||+|++.|++.++.+ | .+.+.....|.++.+.|+++++++|.|||||+|++|++.++...++++.++||+++||+
T Consensus       127 gdL~VaDAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~  206 (376)
T KOG1520|consen  127 GDLYVADAYLGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDP  206 (376)
T ss_pred             CeEEEEecceeeEEECCCCCcceeccccccCeeeeecCceeEcCCCeEEEeccccccchhheEEeeecCCCccceEEecC
Confidence             99999999999999954 4 77777888999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEecCc
Q 017371          207 SSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLD  286 (372)
Q Consensus       207 ~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~  286 (372)
                      .|++.+++.+++.+|||+++++|+++++++++...||.|||++|++.++.+.|++++||+||||+.+++|++||+....|
T Consensus       207 ~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k~gt~EvFa~~LPG~PDNIR~~~~G~fWVal~~~~  286 (376)
T KOG1520|consen  207 STKVTKVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYWIKGPKAGTSEVFAEGLPGYPDNIRRDSTGHFWVALHSKR  286 (376)
T ss_pred             cccchhhhhhcccccccccCCCCCCEEEEEeeccceeeeeEecCCccCchhhHhhcCCCCCcceeECCCCCEEEEEeccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHhhcchhHHHHHHhcCcccccccc----CCCceEEEEECCCCcEEEEEECCCCCeeccceeeEEECCEEEEEeCC
Q 017371          287 ARRMKILNSSKLIKHVLAAYPKLFSQFIT----LGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLT  362 (372)
Q Consensus       287 ~~~~~~~~~~~~~r~~~~~~p~~~~~~~~----~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~igs~~  362 (372)
                      +..++++.+||++|+++.++|........    ..++..|.+.|.+|+++++++|.+|.....++.+.|.+|+||+||..
T Consensus       287 ~~~~~~~~~~p~vr~~~~~~~~~~~~~~~~~~~~~p~~~V~~~d~~G~il~~lhD~~g~~~~~~sev~E~dg~LyiGS~~  366 (376)
T KOG1520|consen  287 STLWRLLMKYPWVRKFIAKLPKYMELLYFLNNGGKPHSAVKLSDETGKILESLHDKEGKVITLVSEVGEHDGHLYIGSLF  366 (376)
T ss_pred             chHHHhhhcChHHHHHHHhhccchhhhhhhhccCCCceEEEEecCCCcEEEEEecCCCCceEEEEEEeecCCeEEEcccC
Confidence            99999999999999999999766543222    23446677777999999999999999999999999999999999999


Q ss_pred             CCeEEEEeCC
Q 017371          363 SNFIGKVQLS  372 (372)
Q Consensus       363 ~~~i~~~~~~  372 (372)
                      +++|+++||.
T Consensus       367 ~p~i~~lkl~  376 (376)
T KOG1520|consen  367 NPYIARLKLP  376 (376)
T ss_pred             cceeEEEecC
Confidence            9999999974

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.97  E-value=2e-28  Score=219.43  Aligned_cols=229  Identities=28%  Similarity=0.445  Sum_probs=180.1

Q ss_pred             CccEEEcC-CCcEEEEe-cCCeEEEEe--CCceEEEEecCCCcccCeEEc-CCCCEEEEeCCCcEEEEc-CCC-cEEEee
Q 017371           81 PEDASMDK-NGVIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTST-KEGHLIICDNANGLHKVS-EDG-VENFLS  153 (372)
Q Consensus        81 p~~i~~d~-~G~l~v~~-~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d-~dG~l~v~~~~~gv~~~~-~~g-~~~l~~  153 (372)
                      ||++++|+ +|.||+.+ .+++|++++  +++.+.+...  .|. |++++ ++|+||+++. .++..++ .+| ++.+..
T Consensus         2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~--~~~-G~~~~~~~g~l~v~~~-~~~~~~d~~~g~~~~~~~   77 (246)
T PF08450_consen    2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLP--GPN-GMAFDRPDGRLYVADS-GGIAVVDPDTGKVTVLAD   77 (246)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESS--SEE-EEEEECTTSEEEEEET-TCEEEEETTTTEEEEEEE
T ss_pred             CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecC--CCc-eEEEEccCCEEEEEEc-CceEEEecCCCcEEEEee
Confidence            68899996 89999999 789999999  4445444443  388 99999 8899999986 5677778 777 777776


Q ss_pred             ecCCc-ccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCE
Q 017371          154 YVNGS-KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDY  232 (372)
Q Consensus       154 ~~~~~-~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~  232 (372)
                      ...+. ++..+|++++|++|+||++++.....         .....|+||+++++ ++.+.+..++..|||+++++|++.
T Consensus        78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~---------~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~  147 (246)
T PF08450_consen   78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGA---------SGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKT  147 (246)
T ss_dssp             EETTCSCTEEEEEEEE-TTS-EEEEEECCBCT---------TCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSE
T ss_pred             ccCCCcccCCCceEEEcCCCCEEEEecCCCcc---------ccccccceEEECCC-CeEEEEecCcccccceEECCcchh
Confidence            64344 67899999999999999998742110         00011889999998 899999999999999999999999


Q ss_pred             EEEEeCCCCeEEEEEccCC--CCcceeeeccC--CCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCc
Q 017371          233 VVVCESWKFRCRKYWLKGE--RKGKLETFAEN--LPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPK  308 (372)
Q Consensus       233 l~v~~~~~~~i~~~~~~g~--~~~~~~~~~~~--~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~  308 (372)
                      ||++++..++|++|+++..  .....+.+.+.  ..+.|||+++|++|+|||+.+.                        
T Consensus       148 lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~------------------------  203 (246)
T PF08450_consen  148 LYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG------------------------  203 (246)
T ss_dssp             EEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET------------------------
T ss_pred             eeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC------------------------
Confidence            9999999999999999743  24445555432  3346999999999999999987                        


Q ss_pred             cccccccCCCceEEEEECCCCcEEEEEECCCCCeeccceeeEEE---CCEEEEEeC
Q 017371          309 LFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV---DNHLYVISL  361 (372)
Q Consensus       309 ~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~---~g~L~igs~  361 (372)
                                .+.|.+++++|+++..+..|..    .++++++.   .++|||.+.
T Consensus       204 ----------~~~I~~~~p~G~~~~~i~~p~~----~~t~~~fgg~~~~~L~vTta  245 (246)
T PF08450_consen  204 ----------GGRIVVFDPDGKLLREIELPVP----RPTNCAFGGPDGKTLYVTTA  245 (246)
T ss_dssp             ----------TTEEEEEETTSCEEEEEE-SSS----SEEEEEEESTTSSEEEEEEB
T ss_pred             ----------CCEEEEECCCccEEEEEcCCCC----CEEEEEEECCCCCEEEEEeC
Confidence                      6799999999999999998832    47888884   378999985

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=99.96  E-value=8.4e-27  Score=211.86  Aligned_cols=247  Identities=26%  Similarity=0.428  Sum_probs=190.8

Q ss_pred             ccCceEecCCCCCCCccEEEcCCCcEEEEe-cCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCCEEEEeCCCcEEEE
Q 017371           67 LQDFIKVGEGSVNHPEDASMDKNGVIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKV  143 (372)
Q Consensus        67 l~~~~~~~~g~~~~p~~i~~d~~G~l~v~~-~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~  143 (372)
                      +.....+++|+++.|+      .+.||+.+ ..++|++++  +|+.+.|..+...+. ++.+++.|.|++++.  |+.++
T Consensus        20 ~~~~~~~gEgP~w~~~------~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~-~~~~d~~g~Lv~~~~--g~~~~   90 (307)
T COG3386          20 LDKGATLGEGPVWDPD------RGALLWVDILGGRIHRLDPETGKKRVFPSPGGFSS-GALIDAGGRLIACEH--GVRLL   90 (307)
T ss_pred             eecccccccCccCcCC------CCEEEEEeCCCCeEEEecCCcCceEEEECCCCccc-ceeecCCCeEEEEcc--ccEEE
Confidence            3444555555554443      55688888 789999999  688999988888888 999999999988864  56666


Q ss_pred             c-CCC-c-EEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccC
Q 017371          144 S-EDG-V-ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYF  220 (372)
Q Consensus       144 ~-~~g-~-~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~  220 (372)
                      + +++ . +.+.....+.+...+|++.++++|++||++++. +   +  ....+....|.||++||.++..+.+...+..
T Consensus        91 ~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~-~---~--~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~  164 (307)
T COG3386          91 DPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGY-F---D--LGKSEERPTGSLYRVDPDGGVVRLLDDDLTI  164 (307)
T ss_pred             eccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCc-c---c--cCccccCCcceEEEEcCCCCEEEeecCcEEe
Confidence            6 555 4 777777777778899999999999999999863 1   1  2334456778999999964444444444999


Q ss_pred             cceEEEecCCCEEEEEeCCCCeEEEEEcc---CCCCcc-eeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcc
Q 017371          221 ANGVALSRDEDYVVVCESWKFRCRKYWLK---GERKGK-LETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSS  296 (372)
Q Consensus       221 ~~gi~~~~dg~~l~v~~~~~~~i~~~~~~---g~~~~~-~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~  296 (372)
                      |||++||||++.+|++++..++|++|+.+   +..... ...+.+..+|.|||+++|++|+||++....           
T Consensus       165 ~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~-----------  233 (307)
T COG3386         165 PNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWG-----------  233 (307)
T ss_pred             cCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccC-----------
Confidence            99999999999999999999999999987   332222 234444577999999999999999744431           


Q ss_pred             hhHHHHHHhcCccccccccCCCceEEEEECCCCcEEEEEECCCCCeeccceeeEEEC---CEEEEEeCCCCe
Q 017371          297 KLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVD---NHLYVISLTSNF  365 (372)
Q Consensus       297 ~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~---g~L~igs~~~~~  365 (372)
                                            .++|.+|+++|+.+..+..|..    .++++++.+   ++|||.+...+.
T Consensus       234 ----------------------g~~v~~~~pdG~l~~~i~lP~~----~~t~~~FgG~~~~~L~iTs~~~~~  279 (307)
T COG3386         234 ----------------------GGRVVRFNPDGKLLGEIKLPVK----RPTNPAFGGPDLNTLYITSARSGM  279 (307)
T ss_pred             ----------------------CceEEEECCCCcEEEEEECCCC----CCccceEeCCCcCEEEEEecCCCC
Confidence                                  3489999999999999999863    477788865   899999988743

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=99.86  E-value=2.1e-19  Score=154.13  Aligned_cols=233  Identities=16%  Similarity=0.149  Sum_probs=177.8

Q ss_pred             CCCCccEEEcCCCcEEEEe-cCCeEEEEe--CCceEEEEec-CCCcccCeEEcCCCCEEEEeCCCcEEEEc-CCC-cEEE
Q 017371           78 VNHPEDASMDKNGVIYTAT-RDGWIKRLQ--DGTWVNWKFI-DSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENF  151 (372)
Q Consensus        78 ~~~p~~i~~d~~G~l~v~~-~~g~i~~~~--~g~~~~~~~~-~~~p~~gl~~d~dG~l~v~~~~~gv~~~~-~~g-~~~l  151 (372)
                      -..|..++.++||.+|++. ..|.|-++|  +|+++++.-. +..|. ++.+++||..||+|...+|.+++ ++. ++.+
T Consensus        61 G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Ph-giv~gpdg~~Witd~~~aI~R~dpkt~evt~f  139 (353)
T COG4257          61 GSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPH-GIVVGPDGSAWITDTGLAIGRLDPKTLEVTRF  139 (353)
T ss_pred             CCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCc-eEEECCCCCeeEecCcceeEEecCcccceEEe
Confidence            3589999999999999987 678889999  8999888654 45789 99999999999999888999999 566 6554


Q ss_pred             eeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeC-CccCcceEEEecCC
Q 017371          152 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-GFYFANGVALSRDE  230 (372)
Q Consensus       152 ~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~-~~~~~~gi~~~~dg  230 (372)
                      .-...- .....+...+|++|++||+...                  |---|+||.++.++++.. .-..|+||+..|||
T Consensus       140 ~lp~~~-a~~nlet~vfD~~G~lWFt~q~------------------G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdG  200 (353)
T COG4257         140 PLPLEH-ADANLETAVFDPWGNLWFTGQI------------------GAYGRLDPARNVISVFPAPQGGGPYGICATPDG  200 (353)
T ss_pred             eccccc-CCCcccceeeCCCccEEEeecc------------------ccceecCcccCceeeeccCCCCCCcceEECCCC
Confidence            322111 1124567889999999998543                  222278888877777543 34568999999999


Q ss_pred             CEEEEEeCCCCeEEEEEccCCCCcceeeec--cCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCc
Q 017371          231 DYVVVCESWKFRCRKYWLKGERKGKLETFA--ENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPK  308 (372)
Q Consensus       231 ~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~--~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~  308 (372)
                      . +|+++...+-|.+++....   ..+.+.  +.+...-..+-.|+.|++|++++.                        
T Consensus       201 s-vwyaslagnaiaridp~~~---~aev~p~P~~~~~gsRriwsdpig~~wittwg------------------------  252 (353)
T COG4257         201 S-VWYASLAGNAIARIDPFAG---HAEVVPQPNALKAGSRRIWSDPIGRAWITTWG------------------------  252 (353)
T ss_pred             c-EEEEeccccceEEcccccC---CcceecCCCcccccccccccCccCcEEEeccC------------------------
Confidence            7 9999888889999987543   223332  111222456788999999999998                        


Q ss_pred             cccccccCCCceEEEEECCCCcEEEEEECCCCCeeccceeeEEEC-CEEEEEeCCCCeEEEEe
Q 017371          309 LFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVD-NHLYVISLTSNFIGKVQ  370 (372)
Q Consensus       309 ~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~-g~L~igs~~~~~i~~~~  370 (372)
                                .+.+.+||+.-+.=..|..|+.+  ....++..++ +++|+.....+.|.++|
T Consensus       253 ----------~g~l~rfdPs~~sW~eypLPgs~--arpys~rVD~~grVW~sea~agai~rfd  303 (353)
T COG4257         253 ----------TGSLHRFDPSVTSWIEYPLPGSK--ARPYSMRVDRHGRVWLSEADAGAIGRFD  303 (353)
T ss_pred             ----------CceeeEeCcccccceeeeCCCCC--CCcceeeeccCCcEEeeccccCceeecC
Confidence                      68999999987776778887543  3456666664 99999999999999987

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.85  E-value=1.7e-18  Score=182.17  Aligned_cols=244  Identities=18%  Similarity=0.260  Sum_probs=177.7

Q ss_pred             CCCCCccEEEcC-CCcEEEEe-cCCeEEEEe-CCceEEEEec---------------CCCcccCeEEcCCCC-EEEEeCC
Q 017371           77 SVNHPEDASMDK-NGVIYTAT-RDGWIKRLQ-DGTWVNWKFI---------------DSQTLVGLTSTKEGH-LIICDNA  137 (372)
Q Consensus        77 ~~~~p~~i~~d~-~G~l~v~~-~~g~i~~~~-~g~~~~~~~~---------------~~~p~~gl~~d~dG~-l~v~~~~  137 (372)
                      .+..|.++++|+ +|.||+++ .+++|.+++ +|........               .+.|. |++++++|+ |||+|..
T Consensus       566 ~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~-GIavd~~gn~LYVaDt~  644 (1057)
T PLN02919        566 PLKFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQ-GLAYNAKKNLLYVADTE  644 (1057)
T ss_pred             cCCCCceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCc-EEEEeCCCCEEEEEeCC
Confidence            478899999996 68899999 788999999 7765433221               23589 999998775 8999876


Q ss_pred             -CcEEEEc-CCC-cEEEeee------cCC------cccccccceEEcc-CCcEEEEeCCCCCCCcccccccccccCCCeE
Q 017371          138 -NGLHKVS-EDG-VENFLSY------VNG------SKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQL  201 (372)
Q Consensus       138 -~gv~~~~-~~g-~~~l~~~------~~~------~~~~~~~~l~~d~-dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v  201 (372)
                       +.|.+++ .++ ++.+...      ..+      ..+..|.++++++ +|.+||+|.                 .+++|
T Consensus       645 n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~-----------------~~~~I  707 (1057)
T PLN02919        645 NHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA-----------------GQHQI  707 (1057)
T ss_pred             CceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC-----------------CCCeE
Confidence             4578888 566 6666431      011      1256788999998 789999986                 46788


Q ss_pred             EEEeCCCCeEEEEe---------------CCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCccee---------
Q 017371          202 LKYDPSSNITTLVA---------------DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLE---------  257 (372)
Q Consensus       202 ~~~d~~t~~~~~~~---------------~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~---------  257 (372)
                      +++|..++.+..+.               ..+..|+|+++++|++.+||+++.+++|.+|++++.......         
T Consensus       708 ~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~  787 (1057)
T PLN02919        708 WEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDN  787 (1057)
T ss_pred             EEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcc
Confidence            88888777665432               124678999999999999999999999999998753211000         


Q ss_pred             --eecc-------CCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEECCC
Q 017371          258 --TFAE-------NLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED  328 (372)
Q Consensus       258 --~~~~-------~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~  328 (372)
                        .+.+       .....|.++++|++|++||++..                                  ++.|.++|.+
T Consensus       788 l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~----------------------------------N~rIrviD~~  833 (1057)
T PLN02919        788 LFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSY----------------------------------NHKIKKLDPA  833 (1057)
T ss_pred             cccccCCCCchhhhhccCCceeeEeCCCcEEEEECC----------------------------------CCEEEEEECC
Confidence              0000       01125899999999999999987                                  6789999987


Q ss_pred             CcEEEEEECC------CC----CeeccceeeEEE-CCEEEEEeCCCCeEEEEeCC
Q 017371          329 GTIIRNLVDP------TG----QLMSFVTSGLQV-DNHLYVISLTSNFIGKVQLS  372 (372)
Q Consensus       329 g~~~~~~~~~------~g----~~~~~~t~~~~~-~g~L~igs~~~~~i~~~~~~  372 (372)
                      +..+..+...      +|    ..++.+.++..+ +|+||+++..++.|.+++++
T Consensus       834 tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~  888 (1057)
T PLN02919        834 TKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLN  888 (1057)
T ss_pred             CCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECC
Confidence            6554443221      11    124567888886 68999999999999999863

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=99.83  E-value=1.5e-20  Score=137.54  Aligned_cols=88  Identities=52%  Similarity=0.965  Sum_probs=74.7

Q ss_pred             cceEEccC-CcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCCCCe
Q 017371          164 NDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFR  242 (372)
Q Consensus       164 ~~l~~d~d-G~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~  242 (372)
                      |+++++++ |.|||||+|.+|+..++..+++++.++|+|++|||.|++.+++++++.+||||++++|+++++|+|+...|
T Consensus         1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~~R   80 (89)
T PF03088_consen    1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGRYR   80 (89)
T ss_dssp             -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGGTE
T ss_pred             CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccCce
Confidence            57899998 99999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEccCC
Q 017371          243 CRKYWLKGE  251 (372)
Q Consensus       243 i~~~~~~g~  251 (372)
                      |.|||++|+
T Consensus        81 i~rywl~Gp   89 (89)
T PF03088_consen   81 ILRYWLKGP   89 (89)
T ss_dssp             EEEEESSST
T ss_pred             EEEEEEeCC
Confidence            999999874

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=99.77  E-value=3.4e-16  Score=134.61  Aligned_cols=238  Identities=10%  Similarity=0.066  Sum_probs=175.3

Q ss_pred             CceEecCCCCCCCccEEEcCCCcEEEEecCCeEEEEe--CCceEEEEecCCCcc---cCeEEcCCCCEEEEeCCCcE-EE
Q 017371           69 DFIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQTL---VGLTSTKEGHLIICDNANGL-HK  142 (372)
Q Consensus        69 ~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~g~i~~~~--~g~~~~~~~~~~~p~---~gl~~d~dG~l~v~~~~~gv-~~  142 (372)
                      ++++++.|.-..|+.|.++++|..|+.+....|.|++  +.++++|.-+..++.   ....||+.|+||.+.. .|. -+
T Consensus        94 ev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q-~G~yGr  172 (353)
T COG4257          94 EVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQ-IGAYGR  172 (353)
T ss_pred             ceEEEecCCCCCCceEEECCCCCeeEecCcceeEEecCcccceEEeecccccCCCcccceeeCCCccEEEeec-ccccee
Confidence            6777777766789999999999999999655799999  678888876554432   1578999999999864 343 36


Q ss_pred             Ec-CCC-cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCc--
Q 017371          143 VS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF--  218 (372)
Q Consensus       143 ~~-~~g-~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~--  218 (372)
                      +| ..+ ++++...    ....+++|++.+||.+|++.-                 ....|.++||.++..+++...-  
T Consensus       173 LdPa~~~i~vfpaP----qG~gpyGi~atpdGsvwyasl-----------------agnaiaridp~~~~aev~p~P~~~  231 (353)
T COG4257         173 LDPARNVISVFPAP----QGGGPYGICATPDGSVWYASL-----------------AGNAIARIDPFAGHAEVVPQPNAL  231 (353)
T ss_pred             cCcccCceeeeccC----CCCCCcceEECCCCcEEEEec-----------------cccceEEcccccCCcceecCCCcc
Confidence            77 455 6666443    224789999999999999743                 2346899999888666553221  


Q ss_pred             -cCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeec-cCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcc
Q 017371          219 -YFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFA-ENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSS  296 (372)
Q Consensus       219 -~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~-~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~  296 (372)
                       ....++-.++.|+ +|+++.++.++.+|+.....   ...+. ......|..+.+|..|++|.++..            
T Consensus       232 ~~gsRriwsdpig~-~wittwg~g~l~rfdPs~~s---W~eypLPgs~arpys~rVD~~grVW~sea~------------  295 (353)
T COG4257         232 KAGSRRIWSDPIGR-AWITTWGTGSLHRFDPSVTS---WIEYPLPGSKARPYSMRVDRHGRVWLSEAD------------  295 (353)
T ss_pred             cccccccccCccCc-EEEeccCCceeeEeCccccc---ceeeeCCCCCCCcceeeeccCCcEEeeccc------------
Confidence             1123455667775 99999999999999986532   22221 122236889999999999999988            


Q ss_pred             hhHHHHHHhcCccccccccCCCceEEEEECCCCcEEEEEECCCCCeeccceeeEEE--CCEEEEEeCCCCeEEEEe
Q 017371          297 KLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV--DNHLYVISLTSNFIGKVQ  370 (372)
Q Consensus       297 ~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~--~g~L~igs~~~~~i~~~~  370 (372)
                                            .+.|.+||++...+.+|..+..+    ...+..+  .|.+|++-..-+.+.+.+
T Consensus       296 ----------------------agai~rfdpeta~ftv~p~pr~n----~gn~ql~gr~ge~W~~e~gvd~lv~~r  345 (353)
T COG4257         296 ----------------------AGAIGRFDPETARFTVLPIPRPN----SGNIQLDGRPGELWFTEAGVDALVTTR  345 (353)
T ss_pred             ----------------------cCceeecCcccceEEEecCCCCC----CCceeccCCCCceeecccCcceeEEEE
Confidence                                  67899999999888898877543    1123333  589999998888887765

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.71  E-value=2.5e-15  Score=158.32  Aligned_cols=188  Identities=16%  Similarity=0.245  Sum_probs=135.9

Q ss_pred             CCCCccEEEcCCC-cEEEEe-cCCeEEEEe--CCceEEEEec-----------------CCCcccCeEEcC-CCCEEEEe
Q 017371           78 VNHPEDASMDKNG-VIYTAT-RDGWIKRLQ--DGTWVNWKFI-----------------DSQTLVGLTSTK-EGHLIICD  135 (372)
Q Consensus        78 ~~~p~~i~~d~~G-~l~v~~-~~g~i~~~~--~g~~~~~~~~-----------------~~~p~~gl~~d~-dG~l~v~~  135 (372)
                      +..|.+|++|++| .||+++ .+++|.+++  ++.++++...                 .+.|. ++++++ +|.|||++
T Consensus       623 f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~-gVa~dp~~g~LyVad  701 (1057)
T PLN02919        623 FNRPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPW-DVCFEPVNEKVYIAM  701 (1057)
T ss_pred             cCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCe-EEEEecCCCeEEEEE
Confidence            5679999999876 589999 577888898  5666655321                 24688 999998 68899998


Q ss_pred             CC-CcEEEEc-CCC-cEEEeee-----cC-----CcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeE
Q 017371          136 NA-NGLHKVS-EDG-VENFLSY-----VN-----GSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQL  201 (372)
Q Consensus       136 ~~-~gv~~~~-~~g-~~~l~~~-----~~-----~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v  201 (372)
                      .. +.|.+++ .+| ...+...     ..     ...+..|++|+++++|. |||+|.                 .+++|
T Consensus       702 ~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs-----------------~n~~I  764 (1057)
T PLN02919        702 AGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADS-----------------ESSSI  764 (1057)
T ss_pred             CCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEEC-----------------CCCeE
Confidence            76 5688888 566 5444311     00     12356789999999986 999986                 46789


Q ss_pred             EEEeCCCCeEEEEeC----------------------CccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceee-
Q 017371          202 LKYDPSSNITTLVAD----------------------GFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLET-  258 (372)
Q Consensus       202 ~~~d~~t~~~~~~~~----------------------~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~-  258 (372)
                      .++|++++....+..                      .+..|.|++++++|+ +||+++.+++|.+|+.++........ 
T Consensus       765 rv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~tg~v~tiaG~  843 (1057)
T PLN02919        765 RALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPATKRVTTLAGT  843 (1057)
T ss_pred             EEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCCCeEEEEecc
Confidence            999988766544321                      134689999999997 99999999999999987643221100 


Q ss_pred             ----ecc-----CCCCCCceeEEcCCCCEEEEEec
Q 017371          259 ----FAE-----NLPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       259 ----~~~-----~~~g~p~~i~~d~~G~lwva~~~  284 (372)
                          +.+     .....|.++++|++|++||++..
T Consensus       844 G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~  878 (1057)
T PLN02919        844 GKAGFKDGKALKAQLSEPAGLALGENGRLFVADTN  878 (1057)
T ss_pred             CCcCCCCCcccccccCCceEEEEeCCCCEEEEECC
Confidence                000     01125899999999999999987

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=99.67  E-value=8.3e-14  Score=131.84  Aligned_cols=173  Identities=22%  Similarity=0.253  Sum_probs=123.4

Q ss_pred             ceEecCC-CCCCCccEEEcCCCcEEEEec------------CC-eEEEEe----CCc---eEEEEecCCCcccCeEEcCC
Q 017371           70 FIKVGEG-SVNHPEDASMDKNGVIYTATR------------DG-WIKRLQ----DGT---WVNWKFIDSQTLVGLTSTKE  128 (372)
Q Consensus        70 ~~~~~~g-~~~~p~~i~~d~~G~l~v~~~------------~g-~i~~~~----~g~---~~~~~~~~~~p~~gl~~d~d  128 (372)
                      ++.+... .+..|..|++|++|+||+++.            .+ +|++++    +|.   .+.+......|. ||++.++
T Consensus         4 ~~l~A~~p~~~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~-Gi~~~~~   82 (367)
T TIGR02604         4 VTLFAAEPLLRNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVT-GLAVAVG   82 (367)
T ss_pred             EEEEECCCccCCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCcc-ceeEecC
Confidence            3445543 478999999999999999962            23 899987    343   466777778899 9999988


Q ss_pred             CCEEEEeCCCcEEEEc-CC------C-cEEEeeecCCc---ccccccceEEccCCcEEEEeCCCCCCCc--ccccccccc
Q 017371          129 GHLIICDNANGLHKVS-ED------G-VENFLSYVNGS---KLRFANDVVEASDGSLYFTVSSSKYLPH--EYCLDILEG  195 (372)
Q Consensus       129 G~l~v~~~~~gv~~~~-~~------g-~~~l~~~~~~~---~~~~~~~l~~d~dG~i~vtd~~~~~~~~--~~~~~~~~~  195 (372)
                      | |||++. ..|+++. .+      + .+.+....+..   ..+.++++++++||+||+++.+......  .........
T Consensus        83 G-lyV~~~-~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~  160 (367)
T TIGR02604        83 G-VYVATP-PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQ  160 (367)
T ss_pred             C-EEEeCC-CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCccc
Confidence            8 999875 4588874 32      2 34555544433   3577899999999999998764211000  000011122


Q ss_pred             cCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCCCCeEEEE
Q 017371          196 KPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKY  246 (372)
Q Consensus       196 ~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~  246 (372)
                      ...|+++++||++++.+++..++.+|+|++++++|+ +|+++.......++
T Consensus       161 ~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~-l~~tdn~~~~~~~i  210 (367)
T TIGR02604       161 GLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGD-VFFCDNDDPPLCRV  210 (367)
T ss_pred             ccCceEEEEecCCCeEEEEecCcCCCccceECCCCC-EEEEccCCCceeEE
Confidence            245789999999999999999999999999999987 88888755444443

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.66  E-value=6.3e-14  Score=118.08  Aligned_cols=225  Identities=17%  Similarity=0.209  Sum_probs=148.1

Q ss_pred             CCcEEEEe-cCCeEEEEe--CCceEEEEecCCCcccCeEEcCCC--CEEEEeCCC--cEEEEc-CCC-cEEEeee---cC
Q 017371           89 NGVIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEG--HLIICDNAN--GLHKVS-EDG-VENFLSY---VN  156 (372)
Q Consensus        89 ~G~l~v~~-~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG--~l~v~~~~~--gv~~~~-~~g-~~~l~~~---~~  156 (372)
                      .+.||..+ ..|.|+|+|  .+.+....- .+.|..|..+--.|  ..+.+.-+.  ++..+| -.. ..++.+-   .+
T Consensus        26 ~~sLl~VDi~ag~v~r~D~~qn~v~ra~i-e~p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~  104 (310)
T KOG4499|consen   26 RQSLLYVDIEAGEVHRYDIEQNKVYRAKI-EGPPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQP  104 (310)
T ss_pred             cceEEEEEeccCceehhhhhhhheEEEEE-ecCcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCc
Confidence            45676666 788999998  444433221 12223255543222  345444343  344444 122 2222221   12


Q ss_pred             CcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEE
Q 017371          157 GSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVC  236 (372)
Q Consensus       157 ~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~  236 (372)
                      .......|+--+||+|+.|...++. ++      ..+| ...|.||+.-+ .++++.+...+..+||++|+.|.+.+|+.
T Consensus       105 d~kknR~NDgkvdP~Gryy~GtMad-~~------~~le-~~~g~Ly~~~~-~h~v~~i~~~v~IsNgl~Wd~d~K~fY~i  175 (310)
T KOG4499|consen  105 DRKKNRLNDGKVDPDGRYYGGTMAD-FG------DDLE-PIGGELYSWLA-GHQVELIWNCVGISNGLAWDSDAKKFYYI  175 (310)
T ss_pred             hHHhcccccCccCCCCceeeeeecc-cc------cccc-ccccEEEEecc-CCCceeeehhccCCccccccccCcEEEEE
Confidence            2233456788899999999887651 11      1112 12355665555 48899988889999999999999999999


Q ss_pred             eCCCCeE--EEEEccCCCCcceeeeccC------CCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCc
Q 017371          237 ESWKFRC--RKYWLKGERKGKLETFAEN------LPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPK  308 (372)
Q Consensus       237 ~~~~~~i--~~~~~~g~~~~~~~~~~~~------~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~  308 (372)
                      ++.+..|  +.|+..++.+.+.....+.      .+-.|||+++|.+|+|||+++.                        
T Consensus       176 Dsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n------------------------  231 (310)
T KOG4499|consen  176 DSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN------------------------  231 (310)
T ss_pred             ccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec------------------------
Confidence            9999999  5555666655554433321      2347999999999999999998                        


Q ss_pred             cccccccCCCceEEEEECCC-CcEEEEEECCCCCeeccceeeEEEC---CEEEEEeC
Q 017371          309 LFSQFITLGGGAHLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQVD---NHLYVISL  361 (372)
Q Consensus       309 ~~~~~~~~~~~~~v~~~~~~-g~~~~~~~~~~g~~~~~~t~~~~~~---g~L~igs~  361 (372)
                                .+.|+++|+. |+++..+..|..    .+|++++.+   +.+|+.+.
T Consensus       232 ----------g~~V~~~dp~tGK~L~eiklPt~----qitsccFgGkn~d~~yvT~a  274 (310)
T KOG4499|consen  232 ----------GGTVQKVDPTTGKILLEIKLPTP----QITSCCFGGKNLDILYVTTA  274 (310)
T ss_pred             ----------CcEEEEECCCCCcEEEEEEcCCC----ceEEEEecCCCccEEEEEeh
Confidence                      6899999975 999999988854    488888875   45777664

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.59  E-value=9.5e-14  Score=124.34  Aligned_cols=175  Identities=21%  Similarity=0.337  Sum_probs=125.0

Q ss_pred             CCccEEEc-CCCcEEEEecCCeEEEEe--CCceEEEEec------CCCcccCeEEcCCCCEEEEeCCC---------cEE
Q 017371           80 HPEDASMD-KNGVIYTATRDGWIKRLQ--DGTWVNWKFI------DSQTLVGLTSTKEGHLIICDNAN---------GLH  141 (372)
Q Consensus        80 ~p~~i~~d-~~G~l~v~~~~g~i~~~~--~g~~~~~~~~------~~~p~~gl~~d~dG~l~v~~~~~---------gv~  141 (372)
                      +|.+++++ ++|.+|+++..+ +..++  +++++.+...      ..+|+ .+++|++|+||+++...         +++
T Consensus        41 ~~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~N-D~~vd~~G~ly~t~~~~~~~~~~~~g~v~  118 (246)
T PF08450_consen   41 GPNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPN-DVAVDPDGNLYVTDSGGGGASGIDPGSVY  118 (246)
T ss_dssp             SEEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEE-EEEE-TTS-EEEEEECCBCTTCGGSEEEE
T ss_pred             CCceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCc-eEEEcCCCCEEEEecCCCccccccccceE
Confidence            49999999 889999998655 55568  6777766543      34678 99999999999998642         388


Q ss_pred             EEcCCC-cEEEeeecCCcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCC--CCe---EEEE
Q 017371          142 KVSEDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS--SNI---TTLV  214 (372)
Q Consensus       142 ~~~~~g-~~~l~~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~--t~~---~~~~  214 (372)
                      +++.++ .+.+...     +..||+|++++||+ +|++|+                 ..++|++|+.+  +++   .+++
T Consensus       119 ~~~~~~~~~~~~~~-----~~~pNGi~~s~dg~~lyv~ds-----------------~~~~i~~~~~~~~~~~~~~~~~~  176 (246)
T PF08450_consen  119 RIDPDGKVTVVADG-----LGFPNGIAFSPDGKTLYVADS-----------------FNGRIWRFDLDADGGELSNRRVF  176 (246)
T ss_dssp             EEETTSEEEEEEEE-----ESSEEEEEEETTSSEEEEEET-----------------TTTEEEEEEEETTTCCEEEEEEE
T ss_pred             EECCCCeEEEEecC-----cccccceEECCcchheeeccc-----------------ccceeEEEeccccccceeeeeeE
Confidence            999667 5555433     45789999999995 888877                 56789999874  331   2223


Q ss_pred             e--CCc-cCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEc-CC-CCEEEEEe
Q 017371          215 A--DGF-YFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLA-PD-GTFWIAII  283 (372)
Q Consensus       215 ~--~~~-~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d-~~-G~lwva~~  283 (372)
                      .  ... ..|.|++++.+|+ ||++....++|++|+.+|......   . .....|.++++. ++ +.|||++.
T Consensus       177 ~~~~~~~g~pDG~~vD~~G~-l~va~~~~~~I~~~~p~G~~~~~i---~-~p~~~~t~~~fgg~~~~~L~vTta  245 (246)
T PF08450_consen  177 IDFPGGPGYPDGLAVDSDGN-LWVADWGGGRIVVFDPDGKLLREI---E-LPVPRPTNCAFGGPDGKTLYVTTA  245 (246)
T ss_dssp             EE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETTSCEEEEE---E--SSSSEEEEEEESTTSSEEEEEEB
T ss_pred             EEcCCCCcCCCcceEcCCCC-EEEEEcCCCEEEEECCCccEEEEE---c-CCCCCEEEEEEECCCCCEEEEEeC
Confidence            2  222 3589999999997 999999999999999886432221   1 111368999994 44 57999875

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.54  E-value=2e-11  Score=114.17  Aligned_cols=246  Identities=13%  Similarity=0.132  Sum_probs=150.8

Q ss_pred             CceEecCCCCCCCccEEEcCCC-cEEEEe-cCCeEEEEe---CCceEEEE--ecCCCcccCeEEcCCCC-EEEEeCC-Cc
Q 017371           69 DFIKVGEGSVNHPEDASMDKNG-VIYTAT-RDGWIKRLQ---DGTWVNWK--FIDSQTLVGLTSTKEGH-LIICDNA-NG  139 (372)
Q Consensus        69 ~~~~~~~g~~~~p~~i~~d~~G-~l~v~~-~~g~i~~~~---~g~~~~~~--~~~~~p~~gl~~d~dG~-l~v~~~~-~g  139 (372)
                      .+..+..+  .+|..++++++| .||+++ .++.|..|+   +|+++...  ...+.|. +++++++|+ ||++... ..
T Consensus        27 ~~~~~~~~--~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~-~i~~~~~g~~l~v~~~~~~~  103 (330)
T PRK11028         27 LLQVVDVP--GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPT-HISTDHQGRFLFSASYNANC  103 (330)
T ss_pred             eeeEEecC--CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCce-EEEECCCCCEEEEEEcCCCe
Confidence            34444433  479999999988 478887 577887666   45554332  2345788 999999996 7777644 34


Q ss_pred             EEEEc--CCC-cEEEeeecCCcccccccceEEccCC-cEEEEeCCCCCCCcccccccccccCCCeEEEEeCCC-CeEEE-
Q 017371          140 LHKVS--EDG-VENFLSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS-NITTL-  213 (372)
Q Consensus       140 v~~~~--~~g-~~~l~~~~~~~~~~~~~~l~~d~dG-~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t-~~~~~-  213 (372)
                      +..++  ++| ........++  ...+..++++++| .+|+++.                 ..+.|..||.++ +.... 
T Consensus       104 v~v~~~~~~g~~~~~~~~~~~--~~~~~~~~~~p~g~~l~v~~~-----------------~~~~v~v~d~~~~g~l~~~  164 (330)
T PRK11028        104 VSVSPLDKDGIPVAPIQIIEG--LEGCHSANIDPDNRTLWVPCL-----------------KEDRIRLFTLSDDGHLVAQ  164 (330)
T ss_pred             EEEEEECCCCCCCCceeeccC--CCcccEeEeCCCCCEEEEeeC-----------------CCCEEEEEEECCCCccccc
Confidence            66665  455 3222111222  1357788999998 4667654                 456787777654 33221 


Q ss_pred             -----EeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCC--CCcceeeec---cC--CCCCCceeEEcCCCC-EEE
Q 017371          214 -----VADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGE--RKGKLETFA---EN--LPGAPDNINLAPDGT-FWI  280 (372)
Q Consensus       214 -----~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~--~~~~~~~~~---~~--~~g~p~~i~~d~~G~-lwv  280 (372)
                           -......|.+++++|||+++|+++...+.|..|+++..  +......+.   ..  .+..+..+.++++|+ +|+
T Consensus       165 ~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv  244 (330)
T PRK11028        165 EPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYA  244 (330)
T ss_pred             CCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEE
Confidence                 11223568899999999999999988889999988632  221111111   10  112345688999996 788


Q ss_pred             EEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEECCCCcEEEEEEC-CCCCeeccceeeEE--ECCEEE
Q 017371          281 AIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVD-PTGQLMSFVTSGLQ--VDNHLY  357 (372)
Q Consensus       281 a~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~-~~g~~~~~~t~~~~--~~g~L~  357 (372)
                      ++...                                +.-.++.++.++........ +.|.   .+..+..  ++.+||
T Consensus       245 ~~~~~--------------------------------~~I~v~~i~~~~~~~~~~~~~~~~~---~p~~~~~~~dg~~l~  289 (330)
T PRK11028        245 CDRTA--------------------------------SLISVFSVSEDGSVLSFEGHQPTET---QPRGFNIDHSGKYLI  289 (330)
T ss_pred             ecCCC--------------------------------CeEEEEEEeCCCCeEEEeEEEeccc---cCCceEECCCCCEEE
Confidence            75431                                12345666666543222211 2221   2334444  457999


Q ss_pred             EEeCCCCeEEEEeC
Q 017371          358 VISLTSNFIGKVQL  371 (372)
Q Consensus       358 igs~~~~~i~~~~~  371 (372)
                      +++...+.|.++++
T Consensus       290 va~~~~~~v~v~~~  303 (330)
T PRK11028        290 AAGQKSHHISVYEI  303 (330)
T ss_pred             EEEccCCcEEEEEE
Confidence            99988899999875

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.49  E-value=4.9e-11  Score=112.11  Aligned_cols=252  Identities=19%  Similarity=0.275  Sum_probs=157.4

Q ss_pred             cccCceEecCCCCCCCccEEEcCCC-cEEEEec----CCeEEEEe---C-CceEEE---EecCCCcccCeEEcCCCC-EE
Q 017371           66 QLQDFIKVGEGSVNHPEDASMDKNG-VIYTATR----DGWIKRLQ---D-GTWVNW---KFIDSQTLVGLTSTKEGH-LI  132 (372)
Q Consensus        66 ~l~~~~~~~~g~~~~p~~i~~d~~G-~l~v~~~----~g~i~~~~---~-g~~~~~---~~~~~~p~~gl~~d~dG~-l~  132 (372)
                      .|.....+..  ...|..+++++++ .||+++.    .|.|..+.   + |+.+.+   ...+..|. .++++++|+ ||
T Consensus        26 ~l~~~~~~~~--~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~-~i~~~~~g~~l~  102 (345)
T PF10282_consen   26 TLTLVQTVAE--GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPC-HIAVDPDGRFLY  102 (345)
T ss_dssp             EEEEEEEEEE--SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEE-EEEECTTSSEEE
T ss_pred             CceEeeeecC--CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcE-EEEEecCCCEEE
Confidence            3444444433  4689999999766 7888874    57887776   4 665544   33566788 999999986 78


Q ss_pred             EEeCCCc-EEE--EcCCC-cEEEeeec----C-----CcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCC
Q 017371          133 ICDNANG-LHK--VSEDG-VENFLSYV----N-----GSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPH  198 (372)
Q Consensus       133 v~~~~~g-v~~--~~~~g-~~~l~~~~----~-----~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~  198 (372)
                      +++...| +..  ++.+| +.......    .     ......++.+.++|||+ +|++|.                 +.
T Consensus       103 vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dl-----------------G~  165 (345)
T PF10282_consen  103 VANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDL-----------------GA  165 (345)
T ss_dssp             EEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEET-----------------TT
T ss_pred             EEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEec-----------------CC
Confidence            8876544 444  44567 33321110    0     11234677899999985 888765                 45


Q ss_pred             CeEEEEeCCCC--eEEE----EeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccC--CCCcceeeecc---CCCC--
Q 017371          199 GQLLKYDPSSN--ITTL----VADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKG--ERKGKLETFAE---NLPG--  265 (372)
Q Consensus       199 g~v~~~d~~t~--~~~~----~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g--~~~~~~~~~~~---~~~g--  265 (372)
                      .+|+.|+.+..  +++.    .......|..++|+||++++|+.+...+.|..|.++.  ...........   ...+  
T Consensus       166 D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~  245 (345)
T PF10282_consen  166 DRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGEN  245 (345)
T ss_dssp             TEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSS
T ss_pred             CEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccC
Confidence            57777765433  3433    2244566888999999999999999999999998872  22222222111   1111  


Q ss_pred             CCceeEEcCCCC-EEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEECC-CCcEEEEEECCC-CCe
Q 017371          266 APDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPT-GQL  342 (372)
Q Consensus       266 ~p~~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~-g~~  342 (372)
                      .+.+|++++||+ |||++...                                ..-.++.+|+ +|++...-..+. |. 
T Consensus       246 ~~~~i~ispdg~~lyvsnr~~--------------------------------~sI~vf~~d~~~g~l~~~~~~~~~G~-  292 (345)
T PF10282_consen  246 APAEIAISPDGRFLYVSNRGS--------------------------------NSISVFDLDPATGTLTLVQTVPTGGK-  292 (345)
T ss_dssp             SEEEEEE-TTSSEEEEEECTT--------------------------------TEEEEEEECTTTTTEEEEEEEEESSS-
T ss_pred             CceeEEEecCCCEEEEEeccC--------------------------------CEEEEEEEecCCCceEEEEEEeCCCC-
Confidence            477899999995 88888761                                1235666654 365543222222 33 


Q ss_pred             eccceeeEEE--CCEEEEEeCCCCeEEEEeCC
Q 017371          343 MSFVTSGLQV--DNHLYVISLTSNFIGKVQLS  372 (372)
Q Consensus       343 ~~~~t~~~~~--~g~L~igs~~~~~i~~~~~~  372 (372)
                        .+..+..+  +..||+++..++.|.++++|
T Consensus       293 --~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d  322 (345)
T PF10282_consen  293 --FPRHFAFSPDGRYLYVANQDSNTVSVFDID  322 (345)
T ss_dssp             --SEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred             --CccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence              36667664  57899999999999998763

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.45  E-value=8e-11  Score=110.70  Aligned_cols=198  Identities=17%  Similarity=0.231  Sum_probs=124.9

Q ss_pred             cccCceEecCCCCCCCccEEEcCCC-cEEEEe-cCCeEEEEe---CCceEEEE--------------ecCCCcccCeEEc
Q 017371           66 QLQDFIKVGEGSVNHPEDASMDKNG-VIYTAT-RDGWIKRLQ---DGTWVNWK--------------FIDSQTLVGLTST  126 (372)
Q Consensus        66 ~l~~~~~~~~g~~~~p~~i~~d~~G-~l~v~~-~~g~i~~~~---~g~~~~~~--------------~~~~~p~~gl~~d  126 (372)
                      .|..+.....+ -..|.+++++++| .||+++ .+|.|..++   +|++....              ....+|+ .+.++
T Consensus        75 ~L~~~~~~~~~-g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H-~v~~~  152 (345)
T PF10282_consen   75 TLTLLNSVPSG-GSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPH-QVVFS  152 (345)
T ss_dssp             EEEEEEEEEES-SSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEE-EEEE-
T ss_pred             eeEEeeeeccC-CCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccce-eEEEC
Confidence            34444444422 2589999999887 688888 688887776   46544321              1235678 89999


Q ss_pred             CCCC-EEEEeCC-CcEEEEc--C-CC-cEEEeeecCCcccccccceEEccCC-cEEEEeCCCCCCCcccccccccccCCC
Q 017371          127 KEGH-LIICDNA-NGLHKVS--E-DG-VENFLSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHG  199 (372)
Q Consensus       127 ~dG~-l~v~~~~-~gv~~~~--~-~g-~~~l~~~~~~~~~~~~~~l~~d~dG-~i~vtd~~~~~~~~~~~~~~~~~~~~g  199 (372)
                      |||+ +||++.+ ..|+.++  . .+ +.... .........|.+++++++| .+|+.+.                 ..+
T Consensus       153 pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~-~~~~~~G~GPRh~~f~pdg~~~Yv~~e-----------------~s~  214 (345)
T PF10282_consen  153 PDGRFVYVPDLGADRVYVYDIDDDTGKLTPVD-SIKVPPGSGPRHLAFSPDGKYAYVVNE-----------------LSN  214 (345)
T ss_dssp             TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEE-EEECSTTSSEEEEEE-TTSSEEEEEET-----------------TTT
T ss_pred             CCCCEEEEEecCCCEEEEEEEeCCCceEEEee-ccccccCCCCcEEEEcCCcCEEEEecC-----------------CCC
Confidence            9986 8888876 4566666  2 23 33322 1122333578999999998 4777643                 234


Q ss_pred             eE--EEEeCCCCeEEEEe------C---CccCcceEEEecCCCEEEEEeCCCCeEEEEEccCC--CCcceeeeccCCCCC
Q 017371          200 QL--LKYDPSSNITTLVA------D---GFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGE--RKGKLETFAENLPGA  266 (372)
Q Consensus       200 ~v--~~~d~~t~~~~~~~------~---~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~--~~~~~~~~~~~~~g~  266 (372)
                      .|  +.++..+++++.+.      .   +...+.+++++|||++||+++.+.+.|..|.++..  ++.....+. .....
T Consensus       215 ~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~-~~G~~  293 (345)
T PF10282_consen  215 TVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVP-TGGKF  293 (345)
T ss_dssp             EEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEE-ESSSS
T ss_pred             cEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEe-CCCCC
Confidence            44  45554466655532      1   12357789999999999999999999999998542  333322222 22336


Q ss_pred             CceeEEcCCCC-EEEEEec
Q 017371          267 PDNINLAPDGT-FWIAIIK  284 (372)
Q Consensus       267 p~~i~~d~~G~-lwva~~~  284 (372)
                      |.+++++++|+ |||++..
T Consensus       294 Pr~~~~s~~g~~l~Va~~~  312 (345)
T PF10282_consen  294 PRHFAFSPDGRYLYVANQD  312 (345)
T ss_dssp             EEEEEE-TTSSEEEEEETT
T ss_pred             ccEEEEeCCCCEEEEEecC
Confidence            99999999996 7776654

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.38  E-value=8e-10  Score=99.09  Aligned_cols=189  Identities=17%  Similarity=0.254  Sum_probs=123.9

Q ss_pred             CCCccEEEcCCC-cEEEEe-cCCeEEEEe---CCceE----EEEecCC---------CcccCeEEcCCCC-EEEEeCC-C
Q 017371           79 NHPEDASMDKNG-VIYTAT-RDGWIKRLQ---DGTWV----NWKFIDS---------QTLVGLTSTKEGH-LIICDNA-N  138 (372)
Q Consensus        79 ~~p~~i~~d~~G-~l~v~~-~~g~i~~~~---~g~~~----~~~~~~~---------~p~~gl~~d~dG~-l~v~~~~-~  138 (372)
                      ..|..+++|++| .|++++ ..|.|.++.   +|.+.    .+...+.         .+. ...++|+|+ |+++|.+ .
T Consensus        89 ~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H-~a~~tP~~~~l~v~DLG~D  167 (346)
T COG2706          89 SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVH-SANFTPDGRYLVVPDLGTD  167 (346)
T ss_pred             CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccc-eeeeCCCCCEEEEeecCCc
Confidence            457899999999 677777 567776665   56533    2222222         245 667889995 6666765 4


Q ss_pred             cEEEEc-CCC-cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeC
Q 017371          139 GLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD  216 (372)
Q Consensus       139 gv~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~  216 (372)
                      .++.++ .+| ++.... ..-.+...|..|+|.|+|++-..              +.|...+=.++.||+..++++.+..
T Consensus       168 ri~~y~~~dg~L~~~~~-~~v~~G~GPRHi~FHpn~k~aY~--------------v~EL~stV~v~~y~~~~g~~~~lQ~  232 (346)
T COG2706         168 RIFLYDLDDGKLTPADP-AEVKPGAGPRHIVFHPNGKYAYL--------------VNELNSTVDVLEYNPAVGKFEELQT  232 (346)
T ss_pred             eEEEEEcccCccccccc-cccCCCCCcceEEEcCCCcEEEE--------------EeccCCEEEEEEEcCCCceEEEeee
Confidence            577777 677 443221 11133457889999999975442              2233344457888887788877542


Q ss_pred             ---------CccCcceEEEecCCCEEEEEeCCCCeEEEEEccC--CCCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 017371          217 ---------GFYFANGVALSRDEDYVVVCESWKFRCRKYWLKG--ERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       217 ---------~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g--~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~  284 (372)
                               +-.....|.+++||++||+++.+.+.|..|.++.  .++.-. .......-.|..+.+++.|++.++...
T Consensus       233 i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~-~~~~teg~~PR~F~i~~~g~~Liaa~q  310 (346)
T COG2706         233 IDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELV-GITPTEGQFPRDFNINPSGRFLIAANQ  310 (346)
T ss_pred             eccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEE-EEeccCCcCCccceeCCCCCEEEEEcc
Confidence                     2223345789999999999999999998887763  222221 112122225999999999998888876

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=99.37  E-value=3.6e-11  Score=112.11  Aligned_cols=156  Identities=19%  Similarity=0.313  Sum_probs=93.4

Q ss_pred             CCCCccEEEcCCCcEEEEecCCeEEEEe-CCce-EEEEec-------CCCcccCeEEcCC----CCEEEEeCC-------
Q 017371           78 VNHPEDASMDKNGVIYTATRDGWIKRLQ-DGTW-VNWKFI-------DSQTLVGLTSTKE----GHLIICDNA-------  137 (372)
Q Consensus        78 ~~~p~~i~~d~~G~l~v~~~~g~i~~~~-~g~~-~~~~~~-------~~~p~~gl~~d~d----G~l~v~~~~-------  137 (372)
                      |..|.+|++.++|++|++...|+|++++ +|.. ..+...       ....+ ||+++|+    +.||++...       
T Consensus         1 L~~P~~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gll-gia~~p~f~~n~~lYv~~t~~~~~~~~   79 (331)
T PF07995_consen    1 LNNPRSMAFLPDGRLLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLL-GIAFHPDFASNGYLYVYYTNADEDGGD   79 (331)
T ss_dssp             ESSEEEEEEETTSCEEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEE-EEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred             CCCceEEEEeCCCcEEEEeCCceEEEEeCCCcCcceecccccccccccCCcc-cceeccccCCCCEEEEEEEcccCCCCC
Confidence            3579999999999999999999999999 7765 333221       12346 9999984    889998652       


Q ss_pred             --CcEEEEc--CC-C----cEEEeeecCC--cccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeC
Q 017371          138 --NGLHKVS--ED-G----VENFLSYVNG--SKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDP  206 (372)
Q Consensus       138 --~gv~~~~--~~-g----~~~l~~~~~~--~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~  206 (372)
                        ..|.++.  .. .    .+.+....+.  ...+.-..|++++||.||++..+...  .+...  ......|.|+|+++
T Consensus        80 ~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~--~~~~~--~~~~~~G~ilri~~  155 (331)
T PF07995_consen   80 NDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN--DDNAQ--DPNSLRGKILRIDP  155 (331)
T ss_dssp             EEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT--GGGGC--STTSSTTEEEEEET
T ss_pred             cceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC--ccccc--ccccccceEEEecc
Confidence              1477666  22 1    3334333232  33456677999999999998654211  00011  11224577888876


Q ss_pred             CCC-------------eEEEEeCCccCcceEEEecCCCEEEEEeC
Q 017371          207 SSN-------------ITTLVADGFYFANGVALSRDEDYVVVCES  238 (372)
Q Consensus       207 ~t~-------------~~~~~~~~~~~~~gi~~~~dg~~l~v~~~  238 (372)
                      +..             ..++++.++.+|.+++|++....||+++.
T Consensus       156 dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~  200 (331)
T PF07995_consen  156 DGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADN  200 (331)
T ss_dssp             TSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE
T ss_pred             cCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEcc
Confidence            532             23556666677777777766334665553

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.37  E-value=9.3e-10  Score=102.92  Aligned_cols=228  Identities=12%  Similarity=0.125  Sum_probs=137.3

Q ss_pred             cEEEEe-cCCeEEEEe---CCceEEEE--ecCCCcccCeEEcCCCC-EEEEeCC-CcEEEEc--CCC-cEEEeeecCCcc
Q 017371           91 VIYTAT-RDGWIKRLQ---DGTWVNWK--FIDSQTLVGLTSTKEGH-LIICDNA-NGLHKVS--EDG-VENFLSYVNGSK  159 (372)
Q Consensus        91 ~l~v~~-~~g~i~~~~---~g~~~~~~--~~~~~p~~gl~~d~dG~-l~v~~~~-~gv~~~~--~~g-~~~l~~~~~~~~  159 (372)
                      .+|+++ .++.|..|+   +|+.+...  ...+.+. .++++++|+ ||++... .++..++  .+| ++.......+  
T Consensus         3 ~~y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~-~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~--   79 (330)
T PRK11028          3 IVYIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQ-PMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLP--   79 (330)
T ss_pred             EEEEEcCCCCCEEEEEECCCCceeeeeEEecCCCCc-cEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCC--
Confidence            478887 577888888   35544322  3346788 999999996 7787543 5676555  456 5433322111  


Q ss_pred             cccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCC-CeE---EEEeCCccCcceEEEecCCCEEE
Q 017371          160 LRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS-NIT---TLVADGFYFANGVALSRDEDYVV  234 (372)
Q Consensus       160 ~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t-~~~---~~~~~~~~~~~gi~~~~dg~~l~  234 (372)
                       ..|..++++++|+ +|++..                 ..+.|..|+.++ +..   .....+...|.+++++||++++|
T Consensus        80 -~~p~~i~~~~~g~~l~v~~~-----------------~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~  141 (330)
T PRK11028         80 -GSPTHISTDHQGRFLFSASY-----------------NANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLW  141 (330)
T ss_pred             -CCceEEEECCCCCEEEEEEc-----------------CCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEE
Confidence             2467899999996 666543                 346666666542 221   11223456688999999999999


Q ss_pred             EEeCCCCeEEEEEccCC-CCcce--eeeccCCCCCCceeEEcCCCC-EEEEEecCchhHHHHhhcchhHHHHHHhcCccc
Q 017371          235 VCESWKFRCRKYWLKGE-RKGKL--ETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLF  310 (372)
Q Consensus       235 v~~~~~~~i~~~~~~g~-~~~~~--~~~~~~~~g~p~~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~  310 (372)
                      +++...+.|..|+++.. .....  ..........|..++++++|+ +|+++...                         
T Consensus       142 v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~-------------------------  196 (330)
T PRK11028        142 VPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELN-------------------------  196 (330)
T ss_pred             EeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCC-------------------------
Confidence            99999999999998642 11110  111101223589999999995 77876531                         


Q ss_pred             cccccCCCceEEEEECC-CCcE--EEEEEC-CCC-CeeccceeeEE--ECCEEEEEeCCCCeEEEEeC
Q 017371          311 SQFITLGGGAHLIHVAE-DGTI--IRNLVD-PTG-QLMSFVTSGLQ--VDNHLYVISLTSNFIGKVQL  371 (372)
Q Consensus       311 ~~~~~~~~~~~v~~~~~-~g~~--~~~~~~-~~g-~~~~~~t~~~~--~~g~L~igs~~~~~i~~~~~  371 (372)
                             ..-.++.++. .|+.  ++.+.. +.. ....+...+..  ++..||+++...+.|.++++
T Consensus       197 -------~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i  257 (330)
T PRK11028        197 -------SSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSV  257 (330)
T ss_pred             -------CEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEE
Confidence                   0223444443 2433  333321 111 11112334444  34679999888899998875

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.32  E-value=8.1e-09  Score=94.33  Aligned_cols=232  Identities=15%  Similarity=0.102  Sum_probs=143.0

Q ss_pred             CCCccEEEcCCCc-EEEEe-cCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCC-EEEEeCC-CcEEEEc-CCC--cE
Q 017371           79 NHPEDASMDKNGV-IYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA-NGLHKVS-EDG--VE  149 (372)
Q Consensus        79 ~~p~~i~~d~~G~-l~v~~-~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~-l~v~~~~-~gv~~~~-~~g--~~  149 (372)
                      ..|.+++++++|. +|++. .++.|..++  +++..........+. .++++++|+ +|++... ..+..++ .++  +.
T Consensus        31 ~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~  109 (300)
T TIGR03866        31 QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPE-LFALHPNGKILYIANEDDNLVTVIDIETRKVLA  109 (300)
T ss_pred             CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCcc-EEEECCCCCEEEEEcCCCCeEEEEECCCCeEEe
Confidence            3578899999885 66665 678899998  455443223334566 888999987 6666543 4577777 444  22


Q ss_pred             EEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecC
Q 017371          150 NFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRD  229 (372)
Q Consensus       150 ~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~d  229 (372)
                      .+.   .+   ..+.+++++++|+++++...                ....++.+|..+++..........+..+++++|
T Consensus       110 ~~~---~~---~~~~~~~~~~dg~~l~~~~~----------------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~d  167 (300)
T TIGR03866       110 EIP---VG---VEPEGMAVSPDGKIVVNTSE----------------TTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTAD  167 (300)
T ss_pred             Eee---CC---CCcceEEECCCCCEEEEEec----------------CCCeEEEEeCCCCeEEEEEEcCCCccEEEECCC
Confidence            221   11   24578999999987775331                123466678776655432222345778999999


Q ss_pred             CCEEEEEeCCCCeEEEEEccCCCCcceeeecc-C---CCCCCceeEEcCCCCE-EEEEecCchhHHHHhhcchhHHHHHH
Q 017371          230 EDYVVVCESWKFRCRKYWLKGERKGKLETFAE-N---LPGAPDNINLAPDGTF-WIAIIKLDARRMKILNSSKLIKHVLA  304 (372)
Q Consensus       230 g~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~-~---~~g~p~~i~~d~~G~l-wva~~~~~~~~~~~~~~~~~~r~~~~  304 (372)
                      ++.++++....+.|..|++.+.+....-.+.. .   ....|.+++++++|+. |++...                    
T Consensus       168 g~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~--------------------  227 (300)
T TIGR03866       168 GKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGP--------------------  227 (300)
T ss_pred             CCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCC--------------------
Confidence            99888876667789999887543211111110 0   1123667899999975 666544                    


Q ss_pred             hcCccccccccCCCceEEEEECC-CCcEEEEEECCCCCeeccceeeEE--ECCEEEEEeCCCCeEEEEeCC
Q 017371          305 AYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQ--VDNHLYVISLTSNFIGKVQLS  372 (372)
Q Consensus       305 ~~p~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~--~~g~L~igs~~~~~i~~~~~~  372 (372)
                                    .+.+..+|. +++.+..+..  +.   .+.++..  ++..||+++...+.|.+++++
T Consensus       228 --------------~~~i~v~d~~~~~~~~~~~~--~~---~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~  279 (300)
T TIGR03866       228 --------------ANRVAVVDAKTYEVLDYLLV--GQ---RVWQLAFTPDEKYLLTTNGVSNDVSVIDVA  279 (300)
T ss_pred             --------------CCeEEEEECCCCcEEEEEEe--CC---CcceEEECCCCCEEEEEcCCCCeEEEEECC
Confidence                          235666664 3565544432  21   2445555  346788887777888888763

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=99.31  E-value=4.8e-10  Score=106.24  Aligned_cols=205  Identities=20%  Similarity=0.198  Sum_probs=122.5

Q ss_pred             CceEecCCCCCCCccEEEcCCCcEEEEecCCeEEEEe--CC------ceEEEEec--------CCCcccCeEEcCCCCEE
Q 017371           69 DFIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQ--DG------TWVNWKFI--------DSQTLVGLTSTKEGHLI  132 (372)
Q Consensus        69 ~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~g~i~~~~--~g------~~~~~~~~--------~~~p~~gl~~d~dG~l~  132 (372)
                      ..+.+.++ +..|++|++.++| ||+++ ..+|+++.  ++      +.+.+...        ...+. ++++++||.||
T Consensus        63 ~~~vfa~~-l~~p~Gi~~~~~G-lyV~~-~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~-~l~~gpDG~LY  138 (367)
T TIGR02604        63 KSNVFAEE-LSMVTGLAVAVGG-VYVAT-PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLN-SLAWGPDGWLY  138 (367)
T ss_pred             eeEEeecC-CCCccceeEecCC-EEEeC-CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCccccccc-CceECCCCCEE
Confidence            34556555 7889999999998 99987 44699884  22      34444321        12266 99999999999


Q ss_pred             EEeCC--------------------CcEEEEcCCC--cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCccccc
Q 017371          133 ICDNA--------------------NGLHKVSEDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCL  190 (372)
Q Consensus       133 v~~~~--------------------~gv~~~~~~g--~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~  190 (372)
                      ++...                    .+++++++++  .+.++.     .++.+++++++++|++|++|....  ......
T Consensus       139 v~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~-----G~rnp~Gl~~d~~G~l~~tdn~~~--~~~~i~  211 (367)
T TIGR02604       139 FNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAH-----GFQNPYGHSVDSWGDVFFCDNDDP--PLCRVT  211 (367)
T ss_pred             EecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEec-----CcCCCccceECCCCCEEEEccCCC--ceeEEc
Confidence            97652                    2488888555  555532     256889999999999999986421  000000


Q ss_pred             ccccccCCCeEE-----EEeCCCC---eE-------------EE--EeCCccCcceEEEec-------CCCEEEEEeCCC
Q 017371          191 DILEGKPHGQLL-----KYDPSSN---IT-------------TL--VADGFYFANGVALSR-------DEDYVVVCESWK  240 (372)
Q Consensus       191 ~~~~~~~~g~v~-----~~d~~t~---~~-------------~~--~~~~~~~~~gi~~~~-------dg~~l~v~~~~~  240 (372)
                      .+.++...|-.+     ..++..+   +.             ..  .......|.|+++..       -.+.+++++...
T Consensus       212 ~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ap~G~~~y~g~~fp~~~~g~~fv~~~~~  291 (367)
T TIGR02604       212 PVAEGGRNGYQSFNGRRYDHADRGADHEVPTGEWRQDDRGVETVGDVAGGGTAPCGIAFYRGDALPEEYRGLLLVGDAHG  291 (367)
T ss_pred             ccccccccCCCCCCCcccccccccccccccccccccccccccccccccCCCccccEEEEeCCCcCCHHHCCCEEeeeccC
Confidence            000000000000     0000000   00             00  011123578888763       334589999999


Q ss_pred             CeEEEEEcc--CCCCc-ceeeeccCCC--CCCceeEEcCCCCEEEEEec
Q 017371          241 FRCRKYWLK--GERKG-KLETFAENLP--GAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       241 ~~i~~~~~~--g~~~~-~~~~~~~~~~--g~p~~i~~d~~G~lwva~~~  284 (372)
                      .+|+++.++  +.... +.+.|.....  +.|..+.+++||.|||+++.
T Consensus       292 ~~v~~~~l~~~g~~~~~~~~~~l~~~~~~~rp~dv~~~pDG~Lyv~d~~  340 (367)
T TIGR02604       292 QLIVRYSLEPKGAGFKGERPEFLRSNDTWFRPVNVTVGPDGALYVSDWY  340 (367)
T ss_pred             CEEEEEEeecCCCccEeecCceEecCCCcccccceeECCCCCEEEEEec
Confidence            999999886  32111 1122332211  47889999999999999965

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=99.28  E-value=9.2e-10  Score=100.20  Aligned_cols=188  Identities=16%  Similarity=0.181  Sum_probs=120.8

Q ss_pred             CeEEcCCCCEEEEeCCC-------------cEEEEc-CCC--cEEEeeec-CCcccccccceEEccC------CcEEEEe
Q 017371          122 GLTSTKEGHLIICDNAN-------------GLHKVS-EDG--VENFLSYV-NGSKLRFANDVVEASD------GSLYFTV  178 (372)
Q Consensus       122 gl~~d~dG~l~v~~~~~-------------gv~~~~-~~g--~~~l~~~~-~~~~~~~~~~l~~d~d------G~i~vtd  178 (372)
                      ++.+|+.|+|||.|.+.             .|+.+| .++  ++.+.-.. ...+..+.+++++|..      +.+|++|
T Consensus         5 ~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD   84 (287)
T PF03022_consen    5 RVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITD   84 (287)
T ss_dssp             EEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEE
T ss_pred             EEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeC
Confidence            78888889999988653             488888 555  34332211 1123457889999862      5799999


Q ss_pred             CCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccC--------------------cceEEEec---CCCEEEE
Q 017371          179 SSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYF--------------------ANGVALSR---DEDYVVV  235 (372)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~--------------------~~gi~~~~---dg~~l~v  235 (372)
                      ++                 .++|..||..+++...+......                    ..|+++++   |+++||+
T Consensus        85 ~~-----------------~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf  147 (287)
T PF03022_consen   85 SG-----------------GPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYF  147 (287)
T ss_dssp             TT-----------------TCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEE
T ss_pred             CC-----------------cCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEE
Confidence            84                 45788888888777666543211                    24677765   8889999


Q ss_pred             EeCCCCeEEEEEcc---CCCCcc-------eeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHh
Q 017371          236 CESWKFRCRKYWLK---GERKGK-------LETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAA  305 (372)
Q Consensus       236 ~~~~~~~i~~~~~~---g~~~~~-------~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~  305 (372)
                      .-..+.+++++..+   .+....       .+.+. ..++..+++++|++|+||++...                     
T Consensus       148 ~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG-~k~~~s~g~~~D~~G~ly~~~~~---------------------  205 (287)
T PF03022_consen  148 HPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLG-DKGSQSDGMAIDPNGNLYFTDVE---------------------  205 (287)
T ss_dssp             EETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEE-E---SECEEEEETTTEEEEEECC---------------------
T ss_pred             EeCCCCcEEEEEHHHhhCccccccccccccceecc-ccCCCCceEEECCCCcEEEecCC---------------------
Confidence            99888889998753   222211       12222 12234689999999999999988                     


Q ss_pred             cCccccccccCCCceEEEEECCCC-----cEEEEEECCCCCeeccceeeEEEC---CEEEEEeCCC
Q 017371          306 YPKLFSQFITLGGGAHLIHVAEDG-----TIIRNLVDPTGQLMSFVTSGLQVD---NHLYVISLTS  363 (372)
Q Consensus       306 ~p~~~~~~~~~~~~~~v~~~~~~g-----~~~~~~~~~~g~~~~~~t~~~~~~---g~L~igs~~~  363 (372)
                                   .+.|.+.++++     +.....+++.  .+.++.++..++   |.||+-+.+-
T Consensus       206 -------------~~aI~~w~~~~~~~~~~~~~l~~d~~--~l~~pd~~~i~~~~~g~L~v~snrl  256 (287)
T PF03022_consen  206 -------------QNAIGCWDPDGPYTPENFEILAQDPR--TLQWPDGLKIDPEGDGYLWVLSNRL  256 (287)
T ss_dssp             -------------CTEEEEEETTTSB-GCCEEEEEE-CC---GSSEEEEEE-T--TS-EEEEE-S-
T ss_pred             -------------CCeEEEEeCCCCcCccchheeEEcCc--eeeccceeeeccccCceEEEEECcc
Confidence                         57899999998     4444556554  267888898876   9999988654

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.28  E-value=2e-08  Score=90.17  Aligned_cols=241  Identities=16%  Similarity=0.224  Sum_probs=151.6

Q ss_pred             CCCCccEEEcCCC-cEEEEe-c--CCeEEEEe----CCceEEEEe---cCCCcccCeEEcCCCC-EEEEeCCCcEEEEc-
Q 017371           78 VNHPEDASMDKNG-VIYTAT-R--DGWIKRLQ----DGTWVNWKF---IDSQTLVGLTSTKEGH-LIICDNANGLHKVS-  144 (372)
Q Consensus        78 ~~~p~~i~~d~~G-~l~v~~-~--~g~i~~~~----~g~~~~~~~---~~~~p~~gl~~d~dG~-l~v~~~~~gv~~~~-  144 (372)
                      +..|.-|++++++ .||++. .  .|+|..|.    +|+.+.+..   .+..|. -+++|++|+ |++++...|-+.+. 
T Consensus        39 ~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~-yvsvd~~g~~vf~AnY~~g~v~v~p  117 (346)
T COG2706          39 LGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPC-YVSVDEDGRFVFVANYHSGSVSVYP  117 (346)
T ss_pred             cCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCe-EEEECCCCCEEEEEEccCceEEEEE
Confidence            5689999999888 899987 3  57775554    477665532   333446 899999996 56666555543333 


Q ss_pred             --CCC-cEEE----eeecCCc--c--cccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEE
Q 017371          145 --EDG-VENF----LSYVNGS--K--LRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT  212 (372)
Q Consensus       145 --~~g-~~~l----~~~~~~~--~--~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~  212 (372)
                        .+| +...    .....++  +  ...+....++|+|+ +++.|-                 +..+|+.|+.+.|+.+
T Consensus       118 ~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DL-----------------G~Dri~~y~~~dg~L~  180 (346)
T COG2706         118 LQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDL-----------------GTDRIFLYDLDDGKLT  180 (346)
T ss_pred             cccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeec-----------------CCceEEEEEcccCccc
Confidence              567 3222    2221211  1  12245677899995 555443                 5668888887767665


Q ss_pred             EEe----CCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeec--cCCC----C--CCceeEEcCCCC-EE
Q 017371          213 LVA----DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFA--ENLP----G--APDNINLAPDGT-FW  279 (372)
Q Consensus       213 ~~~----~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~--~~~~----g--~p~~i~~d~~G~-lw  279 (372)
                      ...    .....|.-|+|+|++++.|+..-.++.|..+..++. .++.+...  ..+|    |  .-..|.+++||+ ||
T Consensus       181 ~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~-~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLY  259 (346)
T COG2706         181 PADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA-VGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLY  259 (346)
T ss_pred             cccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC-CceEEEeeeeccCccccCCCCceeEEEECCCCCEEE
Confidence            532    334567889999999999999888889888887653 23332221  1122    1  123488999997 55


Q ss_pred             EEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEECCCCcEEEEEE-CC-CCCeeccceeeEE--ECCE
Q 017371          280 IAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLV-DP-TGQLMSFVTSGLQ--VDNH  355 (372)
Q Consensus       280 va~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~g~~~~~~~-~~-~g~~~~~~t~~~~--~~g~  355 (372)
                      +++..                                -+.-.++++|++|..+.... .+ .|.   .+-.+.+  .++.
T Consensus       260 asNRg--------------------------------~dsI~~f~V~~~~g~L~~~~~~~teg~---~PR~F~i~~~g~~  304 (346)
T COG2706         260 ASNRG--------------------------------HDSIAVFSVDPDGGKLELVGITPTEGQ---FPRDFNINPSGRF  304 (346)
T ss_pred             EecCC--------------------------------CCeEEEEEEcCCCCEEEEEEEeccCCc---CCccceeCCCCCE
Confidence            55543                                11346888898866554332 22 232   2333444  3578


Q ss_pred             EEEEeCCCCeEEEEeCC
Q 017371          356 LYVISLTSNFIGKVQLS  372 (372)
Q Consensus       356 L~igs~~~~~i~~~~~~  372 (372)
                      |+.++-+++.|.++..|
T Consensus       305 Liaa~q~sd~i~vf~~d  321 (346)
T COG2706         305 LIAANQKSDNITVFERD  321 (346)
T ss_pred             EEEEccCCCcEEEEEEc
Confidence            99999999999988754

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=99.25  E-value=2.6e-08  Score=95.12  Aligned_cols=176  Identities=15%  Similarity=0.178  Sum_probs=115.6

Q ss_pred             CceEecCCCCCCCccEEEcCCCcEEEEec-CCeEEEEe-C-CceEEE------Ee--cCCCcccCeEEcCC-------CC
Q 017371           69 DFIKVGEGSVNHPEDASMDKNGVIYTATR-DGWIKRLQ-D-GTWVNW------KF--IDSQTLVGLTSTKE-------GH  130 (372)
Q Consensus        69 ~~~~~~~g~~~~p~~i~~d~~G~l~v~~~-~g~i~~~~-~-g~~~~~------~~--~~~~p~~gl~~d~d-------G~  130 (372)
                      +++++.+| +..|.+|++.++|++|++.. .|+|++++ + +..+..      ..  ..+..+ ||+++|+       +.
T Consensus        21 ~~~~va~G-L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLl-glal~PdF~~~~~n~~   98 (454)
T TIGR03606        21 DKKVLLSG-LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLL-GLALHPDFMQEKGNPY   98 (454)
T ss_pred             EEEEEECC-CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCcee-eEEECCCccccCCCcE
Confidence            46677777 89999999999999999997 69999998 3 332221      11  234567 9999866       35


Q ss_pred             EEEEeC----------CCcEEEEc-C-C-C----cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCC--cccc--
Q 017371          131 LIICDN----------ANGLHKVS-E-D-G----VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLP--HEYC--  189 (372)
Q Consensus       131 l~v~~~----------~~gv~~~~-~-~-g----~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~--~~~~--  189 (372)
                      |||+-+          ...|.++. . + .    .+.+....+....|.-..|++++||+|||+....-...  ..+.  
T Consensus        99 lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~g~~~~~n~~~~~  178 (454)
T TIGR03606        99 VYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQGRNQGANFFLPN  178 (454)
T ss_pred             EEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCCCCCCcccccCcc
Confidence            888741          23577765 2 2 1    33444444443456667899999999999865421100  0000  


Q ss_pred             --cc------c---ccccCCCeEEEEeCCCC-----------eEEEEeCCccCcceEEEecCCCEEEEEeCCC---CeEE
Q 017371          190 --LD------I---LEGKPHGQLLKYDPSSN-----------ITTLVADGFYFANGVALSRDEDYVVVCESWK---FRCR  244 (372)
Q Consensus       190 --~~------~---~~~~~~g~v~~~d~~t~-----------~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~---~~i~  244 (372)
                        ..      .   ......|.|+|+|++..           ..++++.++.+|.|++|+|+|+ ||+++.+.   ..|.
T Consensus       179 ~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp~G~-Lw~~e~Gp~~~DEiN  257 (454)
T TIGR03606       179 QAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFTPDGT-LYASEQGPNSDDELN  257 (454)
T ss_pred             hhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEECCCCC-EEEEecCCCCCcEEE
Confidence              00      0   11234689999998732           2467888999999999999765 99998655   3455


Q ss_pred             EEE
Q 017371          245 KYW  247 (372)
Q Consensus       245 ~~~  247 (372)
                      ++.
T Consensus       258 ~I~  260 (454)
T TIGR03606       258 IIV  260 (454)
T ss_pred             Eec
Confidence            543

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=99.23  E-value=1.8e-08  Score=95.98  Aligned_cols=237  Identities=15%  Similarity=0.162  Sum_probs=158.1

Q ss_pred             CCccEEEcCCC-cEEEEec-CCeEEEEe--CCceEEEEecC-CCcccCeEEcCCCC-EEEEeCC-CcEEEEc-CCCcEEE
Q 017371           80 HPEDASMDKNG-VIYTATR-DGWIKRLQ--DGTWVNWKFID-SQTLVGLTSTKEGH-LIICDNA-NGLHKVS-EDGVENF  151 (372)
Q Consensus        80 ~p~~i~~d~~G-~l~v~~~-~g~i~~~~--~g~~~~~~~~~-~~p~~gl~~d~dG~-l~v~~~~-~gv~~~~-~~g~~~l  151 (372)
                      .|..++++++| .+|+.+. ...+..++  ....+.+...+ ..|. ++++.++|+ +|+.+.. ..+..++ ... +.+
T Consensus        32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~-~i~v~~~~~~vyv~~~~~~~v~vid~~~~-~~~  109 (381)
T COG3391          32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPA-GVAVNPAGNKVYVTTGDSNTVSVIDTATN-TVL  109 (381)
T ss_pred             CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCcccc-ceeeCCCCCeEEEecCCCCeEEEEcCccc-cee
Confidence            89999999988 8999883 33456565  23333333333 6788 999998886 9999755 5688887 322 111


Q ss_pred             eeecCCcccccccceEEccCC-cEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCC
Q 017371          152 LSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDE  230 (372)
Q Consensus       152 ~~~~~~~~~~~~~~l~~d~dG-~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg  230 (372)
                      .....|   ..|.+++++++| .+|+++..               ..++.+..+|..+++..........|-+++++|+|
T Consensus       110 ~~~~vG---~~P~~~~~~~~~~~vYV~n~~---------------~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g  171 (381)
T COG3391         110 GSIPVG---LGPVGLAVDPDGKYVYVANAG---------------NGNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDG  171 (381)
T ss_pred             eEeeec---cCCceEEECCCCCEEEEEecc---------------cCCceEEEEeCCCCeEEEEEecCCCcceEEECCCC
Confidence            111122   278899999988 89999863               13678999999887766554333467899999999


Q ss_pred             CEEEEEeCCCCeEEEEEccCCCCcceeee--ccCCCCCCceeEEcCCCC-EEEEEecCchhHHHHhhcchhHHHHHHhcC
Q 017371          231 DYVVVCESWKFRCRKYWLKGERKGKLETF--AENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYP  307 (372)
Q Consensus       231 ~~l~v~~~~~~~i~~~~~~g~~~~~~~~~--~~~~~g~p~~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~r~~~~~~p  307 (372)
                      +.+|+++...++|..++.++....+ ...  .-.....|.++.++++|+ +|++....                      
T Consensus       172 ~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~----------------------  228 (381)
T COG3391         172 NKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGS----------------------  228 (381)
T ss_pred             CeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccC----------------------
Confidence            9999999989999999976643332 110  112234699999999996 88888761                      


Q ss_pred             ccccccccCCCceEEEEECCCCcEEEEEECCCCCeeccceeeEE--ECCEEEEEeCCCCeEEEEeC
Q 017371          308 KLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQ--VDNHLYVISLTSNFIGKVQL  371 (372)
Q Consensus       308 ~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~--~~g~L~igs~~~~~i~~~~~  371 (372)
                                ..+.+.++|...........+.+. . ....+..  ++..+|+.....+.+.+++.
T Consensus       229 ----------~~~~v~~id~~~~~v~~~~~~~~~-~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~  282 (381)
T COG3391         229 ----------GSNNVLKIDTATGNVTATDLPVGS-G-APRGVAVDPAGKAAYVANSQGGTVSVIDG  282 (381)
T ss_pred             ----------CCceEEEEeCCCceEEEecccccc-C-CCCceeECCCCCEEEEEecCCCeEEEEeC
Confidence                      025788888654333332222222 1 2223333  45778888777788877764

>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]

Probab=99.20  E-value=1.6e-08  Score=94.38  Aligned_cols=171  Identities=16%  Similarity=0.160  Sum_probs=105.7

Q ss_pred             CceEecCCCCCCCccEEEcCCCcEEEEecC-CeEEEEeCCc---------eEEEEe----------------cCCCcccC
Q 017371           69 DFIKVGEGSVNHPEDASMDKNGVIYTATRD-GWIKRLQDGT---------WVNWKF----------------IDSQTLVG  122 (372)
Q Consensus        69 ~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~-g~i~~~~~g~---------~~~~~~----------------~~~~p~~g  122 (372)
                      ..+.+..| +..|..++..++|.+.+.... |++..+.+|.         ...+..                ....+. +
T Consensus        58 ~~~~~a~g-Le~p~~~~~lP~G~~~v~er~~G~l~~i~~g~~~~~~~~~~~~~~~~~~~Gll~~al~~~fa~~~~~~~-~  135 (399)
T COG2133          58 SVEVVAQG-LEHPWGLARLPDGVLLVTERPTGRLRLISDGGSASPPVSTVPIVLLRGQGGLLDIALSPDFAQGRLVYF-G  135 (399)
T ss_pred             eccccccc-ccCchhheecCCceEEEEccCCccEEEecCCCcccccccccceEEeccCCCccceEecccccccceeee-E
Confidence            45566677 899999999999966666544 7777665221         111111                112233 4


Q ss_pred             eEEcCCCCEEEEeCCCcEEEEc-CCC----cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCccccccccc---
Q 017371          123 LTSTKEGHLIICDNANGLHKVS-EDG----VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILE---  194 (372)
Q Consensus       123 l~~d~dG~l~v~~~~~gv~~~~-~~g----~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~---  194 (372)
                      ++.- .+.+|+++. .++.+++ .+.    ...+....++...++-..|++++||+||++.-+..............   
T Consensus       136 ~a~~-~~~~~~~n~-~~~~~~~~g~~~l~~~~~i~~~lP~~~~H~g~~l~f~pDG~Lyvs~G~~~~~~~aq~~~~~~Gk~  213 (399)
T COG2133         136 ISEP-GGGLYVANR-VAIGRLPGGDTKLSEPKVIFRGIPKGGHHFGGRLVFGPDGKLYVTTGSNGDPALAQDNVSLAGKV  213 (399)
T ss_pred             EEee-cCCceEEEE-EEEEEcCCCccccccccEEeecCCCCCCcCcccEEECCCCcEEEEeCCCCCcccccCccccccce
Confidence            4443 455666653 3466666 222    34455555655578888999999999999976531110000111111   


Q ss_pred             -ccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCCCCeE
Q 017371          195 -GKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRC  243 (372)
Q Consensus       195 -~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i  243 (372)
                       ......++..|+.+...+++..++.+|+|++|+|..+.||+++.+.+.+
T Consensus       214 ~r~~~a~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~~e~g~d~~  263 (399)
T COG2133         214 LRIDRAGIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALWTTEHGPDAL  263 (399)
T ss_pred             eeeccCcccccCCCCCCcceEEeccCCccceeecCCCCcEEEEecCCCcc
Confidence             1123345566777677788899999999999999966799999877444

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.16  E-value=1.1e-07  Score=86.94  Aligned_cols=165  Identities=17%  Similarity=0.195  Sum_probs=102.7

Q ss_pred             CcEEEEe-cCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCC-EEEEeCC-CcEEEEc-CCC-c-EEEeeecCCcccc
Q 017371           90 GVIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA-NGLHKVS-EDG-V-ENFLSYVNGSKLR  161 (372)
Q Consensus        90 G~l~v~~-~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~-l~v~~~~-~gv~~~~-~~g-~-~~l~~~~~~~~~~  161 (372)
                      +.+|++. .+|.|..++  +++..........+. +++++++|+ +|++... ..+..++ .++ . ..+..   +   .
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~-~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~---~---~   73 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQRPR-GITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPS---G---P   73 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceEEEEECCCCCC-ceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccC---C---C
Confidence            3567666 688899998  555433334445678 999999997 5666544 4577778 555 3 22211   1   2


Q ss_pred             cccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCCC
Q 017371          162 FANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK  240 (372)
Q Consensus       162 ~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~  240 (372)
                      .+..++++++|+ +|++..                 ..+.|..+|..+++..........+.+++++|||+.++++....
T Consensus        74 ~~~~~~~~~~g~~l~~~~~-----------------~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~  136 (300)
T TIGR03866        74 DPELFALHPNGKILYIANE-----------------DDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETT  136 (300)
T ss_pred             CccEEEECCCCCEEEEEcC-----------------CCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCC
Confidence            345788999986 555532                 35689999987665433333334578999999999877776544


Q ss_pred             CeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCE-EEEE
Q 017371          241 FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTF-WIAI  282 (372)
Q Consensus       241 ~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~l-wva~  282 (372)
                      ..+..++..+.+.  .....  ....|..+.++++|.. |++.
T Consensus       137 ~~~~~~d~~~~~~--~~~~~--~~~~~~~~~~s~dg~~l~~~~  175 (300)
T TIGR03866       137 NMAHFIDTKTYEI--VDNVL--VDQRPRFAEFTADGKELWVSS  175 (300)
T ss_pred             CeEEEEeCCCCeE--EEEEE--cCCCccEEEECCCCCEEEEEc
Confidence            5566666543211  11111  2234778899999974 4554

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=99.16  E-value=3.9e-09  Score=96.53  Aligned_cols=145  Identities=19%  Similarity=0.358  Sum_probs=103.1

Q ss_pred             CCCCCccEEEcCCCcEEEEecC------------CeEEEEe-CCceEEEEec-CCCcccCeEEcCCC-CEEEEeCC-CcE
Q 017371           77 SVNHPEDASMDKNGVIYTATRD------------GWIKRLQ-DGTWVNWKFI-DSQTLVGLTSTKEG-HLIICDNA-NGL  140 (372)
Q Consensus        77 ~~~~p~~i~~d~~G~l~v~~~~------------g~i~~~~-~g~~~~~~~~-~~~p~~gl~~d~dG-~l~v~~~~-~gv  140 (372)
                      +...|....++++|.+|+++..            |.|||++ .|..+..... ...|+ ||+++||| .||++|+. +.+
T Consensus       109 ~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~N-Gla~SpDg~tly~aDT~~~~i  187 (307)
T COG3386         109 PLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPN-GLAFSPDGKTLYVADTPANRI  187 (307)
T ss_pred             CcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecC-ceEECCCCCEEEEEeCCCCeE
Confidence            4578999999999999999844            6799999 7766655544 67889 99999999 79999987 568


Q ss_pred             EEEc-C--CC----cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEE
Q 017371          141 HKVS-E--DG----VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL  213 (372)
Q Consensus       141 ~~~~-~--~g----~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~  213 (372)
                      ++++ .  ++    ....... .. .-..|.++++|.+|+||++...                ..++|.+++|+......
T Consensus       188 ~r~~~d~~~g~~~~~~~~~~~-~~-~~G~PDG~~vDadG~lw~~a~~----------------~g~~v~~~~pdG~l~~~  249 (307)
T COG3386         188 HRYDLDPATGPIGGRRGFVDF-DE-EPGLPDGMAVDADGNLWVAAVW----------------GGGRVVRFNPDGKLLGE  249 (307)
T ss_pred             EEEecCcccCccCCcceEEEc-cC-CCCCCCceEEeCCCCEEEeccc----------------CCceEEEECCCCcEEEE
Confidence            8887 3  23    1111111 11 1247899999999999974221                22489999999444444


Q ss_pred             EeCCccCcceEEEe-cCCCEEEEEeCCC
Q 017371          214 VADGFYFANGVALS-RDEDYVVVCESWK  240 (372)
Q Consensus       214 ~~~~~~~~~gi~~~-~dg~~l~v~~~~~  240 (372)
                      +.-....+..++|- ++.+.|||+....
T Consensus       250 i~lP~~~~t~~~FgG~~~~~L~iTs~~~  277 (307)
T COG3386         250 IKLPVKRPTNPAFGGPDLNTLYITSARS  277 (307)
T ss_pred             EECCCCCCccceEeCCCcCEEEEEecCC
Confidence            44443566667764 5678999988755

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=99.11  E-value=5.5e-08  Score=92.57  Aligned_cols=183  Identities=16%  Similarity=0.179  Sum_probs=128.9

Q ss_pred             CCCccEEEcCCCc-EEEEe-cCCeEEEEe--CCceEEEEecCCCcccCeEEcCCC-CEEEEeCC---CcEEEEcCCCcEE
Q 017371           79 NHPEDASMDKNGV-IYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEG-HLIICDNA---NGLHKVSEDGVEN  150 (372)
Q Consensus        79 ~~p~~i~~d~~G~-l~v~~-~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG-~l~v~~~~---~gv~~~~~~g~~~  150 (372)
                      ..|.++++.+.|. +|+.+ ..+.|..++  ..+.......+..|. +++++++| .+||++..   .-+..+|......
T Consensus        74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~-~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~  152 (381)
T COG3391          74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPV-GLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV  152 (381)
T ss_pred             ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCc-eEEECCCCCEEEEEecccCCceEEEEeCCCCeE
Confidence            6899999998885 99998 457899998  334444444555899 99999988 79999883   4477788433111


Q ss_pred             EeeecCCcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEE-----EeCCccCcceE
Q 017371          151 FLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-----VADGFYFANGV  224 (372)
Q Consensus       151 l~~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~-----~~~~~~~~~gi  224 (372)
                      +.....|.   .|.+++++++|+ +|+++.                 ..++|..+|.++..+..     .......|.++
T Consensus       153 ~~~~~vG~---~P~~~a~~p~g~~vyv~~~-----------------~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i  212 (381)
T COG3391         153 TATIPVGN---TPTGVAVDPDGNKVYVTNS-----------------DDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGI  212 (381)
T ss_pred             EEEEecCC---CcceEEECCCCCeEEEEec-----------------CCCeEEEEeCCCcceeccccccccccCCCCceE
Confidence            11122221   457999999996 999875                 57789999987655543     23446778999


Q ss_pred             EEecCCCEEEEEeCCC--CeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCC-EEEEEec
Q 017371          225 ALSRDEDYVVVCESWK--FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIK  284 (372)
Q Consensus       225 ~~~~dg~~l~v~~~~~--~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwva~~~  284 (372)
                      ++++||+.+|+.+..+  ..+.+++.............. .. .|.++.++++|. +|++...
T Consensus       213 ~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~-~~-~~~~v~~~p~g~~~yv~~~~  273 (381)
T COG3391         213 AVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVG-SG-APRGVAVDPAGKAAYVANSQ  273 (381)
T ss_pred             EECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccc-cC-CCCceeECCCCCEEEEEecC
Confidence            9999999999999887  589999876543322212221 22 589999999996 5555433

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=99.09  E-value=1.2e-08  Score=103.90  Aligned_cols=238  Identities=16%  Similarity=0.203  Sum_probs=153.0

Q ss_pred             CCCCCccEEEcCCCcEEEEecCCeEEEEe-CCceEEEEecC----CCcccCeEEcC-CCCEEEEeCC-CcEEEEc-CC--
Q 017371           77 SVNHPEDASMDKNGVIYTATRDGWIKRLQ-DGTWVNWKFID----SQTLVGLTSTK-EGHLIICDNA-NGLHKVS-ED--  146 (372)
Q Consensus        77 ~~~~p~~i~~d~~G~l~v~~~~g~i~~~~-~g~~~~~~~~~----~~p~~gl~~d~-dG~l~v~~~~-~gv~~~~-~~--  146 (372)
                      .+..|..+|..+||.||+|+.+ .|.|+- +|.+..+....    .+.+ -||++| ||.|||.+.. +.|+++. -.  
T Consensus       363 ~L~aPvala~a~DGSl~VGDfN-yIRRI~~dg~v~tIl~L~~t~~sh~Y-y~AvsPvdgtlyvSdp~s~qv~rv~sl~~~  440 (1899)
T KOG4659|consen  363 SLFAPVALAYAPDGSLIVGDFN-YIRRISQDGQVSTILTLGLTDTSHSY-YIAVSPVDGTLYVSDPLSKQVWRVSSLEPQ  440 (1899)
T ss_pred             eeeceeeEEEcCCCcEEEccch-heeeecCCCceEEEEEecCCCcccee-EEEecCcCceEEecCCCcceEEEeccCCcc
Confidence            3667889999999999999865 588888 88877765432    2345 688986 7999999876 5688876 11  


Q ss_pred             ---C-cEEEeee----c-------C-----CcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeC
Q 017371          147 ---G-VENFLSY----V-------N-----GSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDP  206 (372)
Q Consensus       147 ---g-~~~l~~~----~-------~-----~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~  206 (372)
                         + .++++..    .       +     ...+.+|.+|++|++|.+||+|..                   +|.++|.
T Consensus       441 d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk~g~lYfaD~t-------------------~IR~iD~  501 (1899)
T KOG4659|consen  441 DSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDKMGNLYFADGT-------------------RIRVIDT  501 (1899)
T ss_pred             ccccCeeEEeccCcCccccccccCcchhcccceeccCCceeEccCCcEEEeccc-------------------EEEEecc
Confidence               2 4555421    0       1     124679999999999999998763                   3555553


Q ss_pred             CCCeEEEEe--------------------CCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCC---Ccce-------
Q 017371          207 SSNITTLVA--------------------DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGER---KGKL-------  256 (372)
Q Consensus       207 ~t~~~~~~~--------------------~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~---~~~~-------  256 (372)
                      . |-+..+.                    -.+..|..++++|=.+.|||.++  +-|++++.++..   ++..       
T Consensus       502 ~-giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~--nvvlrit~~~rV~Ii~GrP~hC~~a~  578 (1899)
T KOG4659|consen  502 T-GIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDT--NVVLRITVVHRVRIILGRPTHCDLAN  578 (1899)
T ss_pred             C-ceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEeec--ceEEEEccCccEEEEcCCccccccCC
Confidence            2 3333321                    12566889999996667999985  457777765421   0110       


Q ss_pred             -eee----ccC-CCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEECCCCc
Q 017371          257 -ETF----AEN-LPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGT  330 (372)
Q Consensus       257 -~~~----~~~-~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~g~  330 (372)
                       ..+    ..+ .--.+..|++..+|-|||+....|                               +-+.|.++..+|+
T Consensus       579 ~t~~~skla~H~tl~~~r~Iavg~~G~lyvaEsD~r-------------------------------riNrvr~~~tdg~  627 (1899)
T KOG4659|consen  579 ATSSASKLADHRTLLIQRDIAVGTDGALYVAESDGR-------------------------------RINRVRKLSTDGT  627 (1899)
T ss_pred             CchhhhhhhhhhhhhhhhceeecCCceEEEEeccch-------------------------------hhhheEEeccCce
Confidence             000    000 001367899999999999998731                               2234555566664


Q ss_pred             EEEEE-----------------ECCC----CCeeccceeeEEE-CCEEEEEeCCCCeEEEE
Q 017371          331 IIRNL-----------------VDPT----GQLMSFVTSGLQV-DNHLYVISLTSNFIGKV  369 (372)
Q Consensus       331 ~~~~~-----------------~~~~----g~~~~~~t~~~~~-~g~L~igs~~~~~i~~~  369 (372)
                      +.-.-                 ...+    ...++.+++++.. +|++||++..+-+|..+
T Consensus       628 i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~v~IAD~gN~rIr~V  688 (1899)
T KOG4659|consen  628 ISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGDVIIADSGNSRIRKV  688 (1899)
T ss_pred             EEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCcEEEecCCchhhhhh
Confidence            32111                 0100    1235567777776 78999999888777543

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=99.09  E-value=6.2e-08  Score=98.86  Aligned_cols=193  Identities=17%  Similarity=0.247  Sum_probs=127.8

Q ss_pred             cEEEcC-CCcEEEEe-cCCeEEEEe--C-----CceEEEEe----------cC-----------CCcccCeEEcCCCCEE
Q 017371           83 DASMDK-NGVIYTAT-RDGWIKRLQ--D-----GTWVNWKF----------ID-----------SQTLVGLTSTKEGHLI  132 (372)
Q Consensus        83 ~i~~d~-~G~l~v~~-~~g~i~~~~--~-----g~~~~~~~----------~~-----------~~p~~gl~~d~dG~l~  132 (372)
                      .||++| +|.||+++ ...+|+|+.  .     +.++.++.          .|           ..|- ||++|++|.||
T Consensus       411 y~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~Pk-GIa~dk~g~lY  489 (1899)
T KOG4659|consen  411 YIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPK-GIAFDKMGNLY  489 (1899)
T ss_pred             EEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEeccCcCccccccccCcchhcccceeccCC-ceeEccCCcEE
Confidence            499997 99999999 567899986  1     23444321          12           2478 99999999999


Q ss_pred             EEeCCCcEEEEcCCC-cEEEeeec---------------CCcccccccceEEcc-CCcEEEEeCCCCCCCcccccccccc
Q 017371          133 ICDNANGLHKVSEDG-VENFLSYV---------------NGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEG  195 (372)
Q Consensus       133 v~~~~~gv~~~~~~g-~~~l~~~~---------------~~~~~~~~~~l~~d~-dG~i~vtd~~~~~~~~~~~~~~~~~  195 (372)
                      .+|. ..+.++|.+| +..+....               ....+..|.+++++| |+.+||-|.                
T Consensus       490 faD~-t~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~----------------  552 (1899)
T KOG4659|consen  490 FADG-TRIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDT----------------  552 (1899)
T ss_pred             Eecc-cEEEEeccCceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEeec----------------
Confidence            9986 4699999888 66554211               123467888999998 789999754                


Q ss_pred             cCCCeEEEEeCCCCeEEEEe---------------------CCccCcceEEEecCCCEEEEEeCCCCeEEEEE---ccCC
Q 017371          196 KPHGQLLKYDPSSNITTLVA---------------------DGFYFANGVALSRDEDYVVVCESWKFRCRKYW---LKGE  251 (372)
Q Consensus       196 ~~~g~v~~~d~~t~~~~~~~---------------------~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~---~~g~  251 (372)
                         +-|+++++. +.+.+++                     ..+..+..|+++++|- |||+++...+|-++.   -+|.
T Consensus       553 ---nvvlrit~~-~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~-lyvaEsD~rriNrvr~~~tdg~  627 (1899)
T KOG4659|consen  553 ---NVVLRITVV-HRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGA-LYVAESDGRRINRVRKLSTDGT  627 (1899)
T ss_pred             ---ceEEEEccC-ccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCce-EEEEeccchhhhheEEeccCce
Confidence               346666654 4444332                     1133467899999996 999999776555543   3331


Q ss_pred             ------CCcce--------eeec------c-CCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCcc
Q 017371          252 ------RKGKL--------ETFA------E-NLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKL  309 (372)
Q Consensus       252 ------~~~~~--------~~~~------~-~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~  309 (372)
                            ..+..        ..|.      . ..-.-|..+++.+||.++||+.+           +-.+|++..+.|..
T Consensus       628 i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~v~IAD~g-----------N~rIr~Vs~~~~~~  695 (1899)
T KOG4659|consen  628 ISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGDVIIADSG-----------NSRIRKVSARMAKY  695 (1899)
T ss_pred             EEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCcEEEecCC-----------chhhhhhhhccccc
Confidence                  00100        0110      0 01123778999999999999987           34678887776653

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=99.08  E-value=3.8e-09  Score=99.93  Aligned_cols=141  Identities=16%  Similarity=0.164  Sum_probs=88.9

Q ss_pred             CCccEEEcCCCcEEEEecCCeEEEEe--CCceEEEEecCC-CcccCeEEcCCCCEEEEeCCCcEEEEcCCC--cEEEeee
Q 017371           80 HPEDASMDKNGVIYTATRDGWIKRLQ--DGTWVNWKFIDS-QTLVGLTSTKEGHLIICDNANGLHKVSEDG--VENFLSY  154 (372)
Q Consensus        80 ~p~~i~~d~~G~l~v~~~~g~i~~~~--~g~~~~~~~~~~-~p~~gl~~d~dG~l~v~~~~~gv~~~~~~g--~~~l~~~  154 (372)
                      ....+.+|.+|.+|+|+.+| +++|+  .|+.-....... .++..+..|..|+|||++ ..|++..++.|  .....  
T Consensus       166 ~V~aLv~D~~g~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg~LWVGT-dqGv~~~e~~G~~~sn~~--  241 (671)
T COG3292         166 PVVALVFDANGRLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQGRLWVGT-DQGVYLQEAEGWRASNWG--  241 (671)
T ss_pred             cceeeeeeccCcEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcCcEEEEe-ccceEEEchhhccccccC--
Confidence            34458899999999999888 99999  555444333222 233277888899999997 47999999656  33222  


Q ss_pred             cCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEe----CCccCcceEEEecCC
Q 017371          155 VNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA----DGFYFANGVALSRDE  230 (372)
Q Consensus       155 ~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~----~~~~~~~gi~~~~dg  230 (372)
                       +..+...+.-+..|.+|++||+..                   .++.++....+.+....    .+....|++-.+.||
T Consensus       242 -~~lp~~~I~ll~qD~qG~lWiGTe-------------------nGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dG  301 (671)
T COG3292         242 -PMLPSGNILLLVQDAQGELWIGTE-------------------NGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDG  301 (671)
T ss_pred             -CCCcchheeeeecccCCCEEEeec-------------------ccceeEecCCCCccccccccCCccccccceeeccCC
Confidence             222234556778899999999743                   23555544333332211    112233667777788


Q ss_pred             CEEEEEeCCCCeEEEEE
Q 017371          231 DYVVVCESWKFRCRKYW  247 (372)
Q Consensus       231 ~~l~v~~~~~~~i~~~~  247 (372)
                      + ||+...  +++++|.
T Consensus       302 s-LWv~t~--~giv~~~  315 (671)
T COG3292         302 S-LWVGTY--GGIVRYL  315 (671)
T ss_pred             C-Eeeecc--CceEEEe
Confidence            6 887654  3466654

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.00  E-value=6.4e-07  Score=83.22  Aligned_cols=246  Identities=12%  Similarity=0.061  Sum_probs=135.2

Q ss_pred             CcEEEEecC-----CeEEEEe--CCceEEEEecCCCcccCeEEcCCC-CEEEEeC---------C-CcEEEEc-CCC--c
Q 017371           90 GVIYTATRD-----GWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEG-HLIICDN---------A-NGLHKVS-EDG--V  148 (372)
Q Consensus        90 G~l~v~~~~-----g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG-~l~v~~~---------~-~gv~~~~-~~g--~  148 (372)
                      .++|+.+..     |+|+.+|  ++++......+.+|. ++ +.+|| .|||+..         . ..|..+| .++  .
T Consensus        13 ~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~   90 (352)
T TIGR02658        13 RRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPI   90 (352)
T ss_pred             CEEEEECCcccccCceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEE
Confidence            357777743     8899999  566555556778899 86 99998 5999987         3 3467777 454  3


Q ss_pred             EEEeeecCCc---ccccccceEEccCCc-EEEEeCCCC-----CC-----------Ccccccccccc-------cCCCeE
Q 017371          149 ENFLSYVNGS---KLRFANDVVEASDGS-LYFTVSSSK-----YL-----------PHEYCLDILEG-------KPHGQL  201 (372)
Q Consensus       149 ~~l~~~~~~~---~~~~~~~l~~d~dG~-i~vtd~~~~-----~~-----------~~~~~~~~~~~-------~~~g~v  201 (372)
                      ..+... +.+   -...++.+++.+||+ +|+++.+..     .+           ..++...+...       ..+|+.
T Consensus        91 ~~i~~p-~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~  169 (352)
T TIGR02658        91 ADIELP-EGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSL  169 (352)
T ss_pred             eEEccC-CCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCce
Confidence            323221 111   134667899999995 888874411     00           00111111111       122222


Q ss_pred             EEEeCC-CCeEEE----EeCC---ccCcceEEEec-CCCEEEEEeCCCCeEEEEEccCCCCcceeee---ccCC--CC-C
Q 017371          202 LKYDPS-SNITTL----VADG---FYFANGVALSR-DEDYVVVCESWKFRCRKYWLKGERKGKLETF---AENL--PG-A  266 (372)
Q Consensus       202 ~~~d~~-t~~~~~----~~~~---~~~~~gi~~~~-dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~---~~~~--~g-~  266 (372)
                      ..+..+ +|+...    +...   .-+.+. .+.+ ||+.+|++..  +.|+.+++.+........+   ....  .+ .
T Consensus       170 ~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP-~~~~~dg~~~~vs~e--G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wr  246 (352)
T TIGR02658       170 AKVGYGTKGNPKIKPTEVFHPEDEYLINHP-AYSNKSGRLVWPTYT--GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWR  246 (352)
T ss_pred             EEEEecCCCceEEeeeeeecCCccccccCC-ceEcCCCcEEEEecC--CeEEEEecCCCcceecceeeeccccccccccC
Confidence            222111 122111    1111   001112 4455 8888888765  6799999766433322222   1111  12 4


Q ss_pred             Cce---eEEcCCC-CEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEECC-CCcEEEEEECCCCC
Q 017371          267 PDN---INLAPDG-TFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQ  341 (372)
Q Consensus       267 p~~---i~~d~~G-~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~  341 (372)
                      |.+   ++++++| ++||+..... ..   -+                     ..+.+.|..+|. .++++..+..  |.
T Consensus       247 P~g~q~ia~~~dg~~lyV~~~~~~-~~---th---------------------k~~~~~V~ViD~~t~kvi~~i~v--G~  299 (352)
T TIGR02658       247 PGGWQQVAYHRARDRIYLLADQRA-KW---TH---------------------KTASRFLFVVDAKTGKRLRKIEL--GH  299 (352)
T ss_pred             CCcceeEEEcCCCCEEEEEecCCc-cc---cc---------------------cCCCCEEEEEECCCCeEEEEEeC--CC
Confidence            555   9999887 7999654310 00   00                     122357888885 4777776665  32


Q ss_pred             eeccceeeEE--ECC-EEEEEeCCCCeEEEEeC
Q 017371          342 LMSFVTSGLQ--VDN-HLYVISLTSNFIGKVQL  371 (372)
Q Consensus       342 ~~~~~t~~~~--~~g-~L~igs~~~~~i~~~~~  371 (372)
                         .+..+..  ++. .||..+-.++.|.++|.
T Consensus       300 ---~~~~iavS~Dgkp~lyvtn~~s~~VsViD~  329 (352)
T TIGR02658       300 ---EIDSINVSQDAKPLLYALSTGDKTLYIFDA  329 (352)
T ss_pred             ---ceeeEEECCCCCeEEEEeCCCCCcEEEEEC
Confidence               2445555  456 78888888898999985

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.91  E-value=3.7e-07  Score=86.26  Aligned_cols=162  Identities=14%  Similarity=0.169  Sum_probs=98.1

Q ss_pred             ceEecCCCCCC-CccEEEcCCC-cEEEEecCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCC-EEEEeCC-CcEEEE
Q 017371           70 FIKVGEGSVNH-PEDASMDKNG-VIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA-NGLHKV  143 (372)
Q Consensus        70 ~~~~~~g~~~~-p~~i~~d~~G-~l~v~~~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~-l~v~~~~-~gv~~~  143 (372)
                      +.++..|.  . +.++++.+|| .+|+++.+|.|..+|  ++++..-...+..|. |+++++||+ +|+++.. ..+..+
T Consensus        29 ~~~i~~~~--~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~-~i~~s~DG~~~~v~n~~~~~v~v~  105 (369)
T PF02239_consen   29 VARIPTGG--APHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPR-GIAVSPDGKYVYVANYEPGTVSVI  105 (369)
T ss_dssp             EEEEE-ST--TEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEE-EEEE--TTTEEEEEEEETTEEEEE
T ss_pred             EEEEcCCC--CceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcc-eEEEcCCCCEEEEEecCCCceeEe
Confidence            44555442  3 3457788888 599999999999999  565544456677899 999999997 5666543 568888


Q ss_pred             c-CCC--cEEEeee-cCC-cccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCe-E-EEEeC
Q 017371          144 S-EDG--VENFLSY-VNG-SKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI-T-TLVAD  216 (372)
Q Consensus       144 ~-~~g--~~~l~~~-~~~-~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~-~-~~~~~  216 (372)
                      | ++.  +..+... .+. .....+.+|...+....|+..                ....+.|+.+|....+ . .....
T Consensus       106 D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~----------------lkd~~~I~vVdy~d~~~~~~~~i~  169 (369)
T PF02239_consen  106 DAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVN----------------LKDTGEIWVVDYSDPKNLKVTTIK  169 (369)
T ss_dssp             ETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEE----------------ETTTTEEEEEETTTSSCEEEEEEE
T ss_pred             ccccccceeecccccccccccCCCceeEEecCCCCEEEEE----------------EccCCeEEEEEeccccccceeeec
Confidence            8 444  4444321 111 111234466666777766643                2256789999865432 1 12233


Q ss_pred             CccCcceEEEecCCCEEEEEeCCCCeEEEEEccC
Q 017371          217 GFYFANGVALSRDEDYVVVCESWKFRCRKYWLKG  250 (372)
Q Consensus       217 ~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g  250 (372)
                      .-.+|....+++++++++++....+.|..++...
T Consensus       170 ~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~  203 (369)
T PF02239_consen  170 VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKT  203 (369)
T ss_dssp             --TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTT
T ss_pred             ccccccccccCcccceeeecccccceeEEEeecc
Confidence            4467888999999999999877778888888654

...

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.83  E-value=9e-07  Score=78.40  Aligned_cols=191  Identities=12%  Similarity=0.140  Sum_probs=106.4

Q ss_pred             CCCCCCccEEEcCC-CcEEEEe-cCCeEEEEe-CCce-EEEEec-CCCcccCeEEcCCCCEEEEeCC-CcEEEEc--CCC
Q 017371           76 GSVNHPEDASMDKN-GVIYTAT-RDGWIKRLQ-DGTW-VNWKFI-DSQTLVGLTSTKEGHLIICDNA-NGLHKVS--EDG  147 (372)
Q Consensus        76 g~~~~p~~i~~d~~-G~l~v~~-~~g~i~~~~-~g~~-~~~~~~-~~~p~~gl~~d~dG~l~v~~~~-~gv~~~~--~~g  147 (372)
                      |....+.+|+++++ ++||+.. ..+.|+.++ +|++ +.+... .+.+- ||+.-.+|.+.+++.. +.++.++  .++
T Consensus        19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~E-gI~y~g~~~~vl~~Er~~~L~~~~~~~~~   97 (248)
T PF06977_consen   19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYE-GITYLGNGRYVLSEERDQRLYIFTIDDDT   97 (248)
T ss_dssp             T--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEE-EEEE-STTEEEEEETTTTEEEEEEE----
T ss_pred             CccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCce-eEEEECCCEEEEEEcCCCcEEEEEEeccc
Confidence            44556999999985 6798776 788999999 7764 344333 35677 9999888877777654 4566666  222


Q ss_pred             --c-----EEEeeecCCcccccccceEEccC-CcEEEEeCCCCCCCcccccccccccCCCeEEEEeC--CCCeEEEEe--
Q 017371          148 --V-----ENFLSYVNGSKLRFANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDP--SSNITTLVA--  215 (372)
Q Consensus       148 --~-----~~l~~~~~~~~~~~~~~l~~d~d-G~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~--~t~~~~~~~--  215 (372)
                        .     +.+.............+|+.|+. +++|+...                ....+||.++.  .........  
T Consensus        98 ~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE----------------~~P~~l~~~~~~~~~~~~~~~~~~  161 (248)
T PF06977_consen   98 TSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKE----------------RKPKRLYEVNGFPGGFDLFVSDDQ  161 (248)
T ss_dssp             TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEE----------------SSSEEEEEEESTT-SS--EEEE-H
T ss_pred             cccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeC----------------CCChhhEEEccccCccceeecccc
Confidence              1     11211222223345679999986 57777532                12346777775  222222211  


Q ss_pred             ------CCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccC------CCCCCceeEEcCCCCEEEEEe
Q 017371          216 ------DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAEN------LPGAPDNINLAPDGTFWIAII  283 (372)
Q Consensus       216 ------~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~------~~g~p~~i~~d~~G~lwva~~  283 (372)
                            .....+.+++++|..+.||+......+|..++.+|...+.. .+...      .-..|.||++|++|+|||++-
T Consensus       162 ~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~-~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsE  240 (248)
T PF06977_consen  162 DLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSL-SLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSE  240 (248)
T ss_dssp             HHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEE-E-STTGGG-SS---SEEEEEE-TT--EEEEET
T ss_pred             ccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEE-EeCCcccCcccccCCccEEEECCCCCEEEEcC
Confidence                  12345789999999999999999899999999776522221 11111      112589999999999999985


Q ss_pred             c
Q 017371          284 K  284 (372)
Q Consensus       284 ~  284 (372)
                      .
T Consensus       241 p  241 (248)
T PF06977_consen  241 P  241 (248)
T ss_dssp             T
T ss_pred             C
Confidence            4

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=98.80  E-value=4e-08  Score=93.13  Aligned_cols=96  Identities=16%  Similarity=0.145  Sum_probs=64.4

Q ss_pred             ccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCC-c-cCcceEEEecCCCEEEEEeC
Q 017371          161 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-F-YFANGVALSRDEDYVVVCES  238 (372)
Q Consensus       161 ~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~-~-~~~~gi~~~~dg~~l~v~~~  238 (372)
                      .....+.+|..|++|++.                   ..++++||+.+++.-..... + ..-+.+..+..|+ |||...
T Consensus       165 ~~V~aLv~D~~g~lWvgT-------------------~dGL~~fd~~~gkalql~s~~~dk~I~al~~d~qg~-LWVGTd  224 (671)
T COG3292         165 TPVVALVFDANGRLWVGT-------------------PDGLSYFDAGRGKALQLASPPLDKAINALIADVQGR-LWVGTD  224 (671)
T ss_pred             ccceeeeeeccCcEEEec-------------------CCcceEEccccceEEEcCCCcchhhHHHHHHHhcCc-EEEEec
Confidence            456689999999999963                   34699999988876554432 2 2234455666665 888754


Q ss_pred             CCCeEEEEEccCCCCcceeeeccCCCCCCce----eEEcCCCCEEEEEec
Q 017371          239 WKFRCRKYWLKGERKGKLETFAENLPGAPDN----INLAPDGTFWIAIIK  284 (372)
Q Consensus       239 ~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~----i~~d~~G~lwva~~~  284 (372)
                        ..++.+...|.....      ..+.+|++    +..|.+|++|+++..
T Consensus       225 --qGv~~~e~~G~~~sn------~~~~lp~~~I~ll~qD~qG~lWiGTen  266 (671)
T COG3292         225 --QGVYLQEAEGWRASN------WGPMLPSGNILLLVQDAQGELWIGTEN  266 (671)
T ss_pred             --cceEEEchhhccccc------cCCCCcchheeeeecccCCCEEEeecc
Confidence              458888876632222      12233444    567999999999976

>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=98.77  E-value=6.9e-07  Score=87.86  Aligned_cols=217  Identities=17%  Similarity=0.181  Sum_probs=142.1

Q ss_pred             cEEEEecCCeEEEEe-CCc------eEE-EEecCCCcccCeEEc-CCCCEEEEeCC-CcEEEEcCCC--cEEEeeecCCc
Q 017371           91 VIYTATRDGWIKRLQ-DGT------WVN-WKFIDSQTLVGLTST-KEGHLIICDNA-NGLHKVSEDG--VENFLSYVNGS  158 (372)
Q Consensus        91 ~l~v~~~~g~i~~~~-~g~------~~~-~~~~~~~p~~gl~~d-~dG~l~v~~~~-~gv~~~~~~g--~~~l~~~~~~~  158 (372)
                      .|.++ ..+.|.+.. +|.      .+. +.-+...+. ||.|| .+-.+|++|.. +.|.+-.-+|  .+.+...    
T Consensus       992 ~LL~a-qg~~I~~lplng~~~~K~~ak~~l~~p~~IiV-GidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~n~---- 1065 (1289)
T KOG1214|consen  992 FLLYA-QGQQIGYLPLNGTRLQKDAAKTLLSLPGSIIV-GIDFDCRERMVYWTDVAGRSISRASLEGAEPETIVNS---- 1065 (1289)
T ss_pred             eEEEe-ccceEEEeecCcchhchhhhhceEecccceee-eeecccccceEEEeecCCCccccccccCCCCceeecc----
Confidence            34444 456677766 331      122 333445677 99999 66678888754 4455555334  4433322    


Q ss_pred             ccccccceEEccCC-cEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEe
Q 017371          159 KLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCE  237 (372)
Q Consensus       159 ~~~~~~~l~~d~dG-~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~  237 (372)
                      .+.+|.+||+|.-+ ++|.+|+..               ..-.+..+|.+ .+...+.++|.+|.+|++++-++.|||++
T Consensus      1066 ~L~SPEGiAVDh~~Rn~ywtDS~l---------------D~IevA~LdG~-~rkvLf~tdLVNPR~iv~D~~rgnLYwtD 1129 (1289)
T KOG1214|consen 1066 GLISPEGIAVDHIRRNMYWTDSVL---------------DKIEVALLDGS-ERKVLFYTDLVNPRAIVVDPIRGNLYWTD 1129 (1289)
T ss_pred             cCCCccceeeeeccceeeeecccc---------------chhheeecCCc-eeeEEEeecccCcceEEeecccCceeecc
Confidence            24578999999766 799998731               12235666653 22233567899999999999988999999


Q ss_pred             CCC--CeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCC--EEEEEecCchhHHHHhhcchhHHHHHHhcCcccccc
Q 017371          238 SWK--FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT--FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQF  313 (372)
Q Consensus       238 ~~~--~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~--lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~  313 (372)
                      +.+  -.|.+.+++|.   +..+++...-++|+|+.+|+...  -||-. +                             
T Consensus      1130 WnRenPkIets~mDG~---NrRilin~DigLPNGLtfdpfs~~LCWvDA-G----------------------------- 1176 (1289)
T KOG1214|consen 1130 WNRENPKIETSSMDGE---NRRILINTDIGLPNGLTFDPFSKLLCWVDA-G----------------------------- 1176 (1289)
T ss_pred             ccccCCcceeeccCCc---cceEEeecccCCCCCceeCcccceeeEEec-C-----------------------------
Confidence            866  46888899884   34566666668899999999875  45533 3                             


Q ss_pred             ccCCCceEEEEECCCCcEEEEEECCCCCeeccceeeEEECCEEEEEeCCCCeEEEEeC
Q 017371          314 ITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL  371 (372)
Q Consensus       314 ~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~igs~~~~~i~~~~~  371 (372)
                           ..++.++.++|.--++...  +  +..+-++.-.++++|..+++.|.|.-+++
T Consensus      1177 -----t~rleC~~p~g~gRR~i~~--~--LqYPF~itsy~~~fY~TDWk~n~vvsv~~ 1225 (1289)
T KOG1214|consen 1177 -----TKRLECTLPDGTGRRVIQN--N--LQYPFSITSYADHFYHTDWKRNGVVSVNK 1225 (1289)
T ss_pred             -----CcceeEecCCCCcchhhhh--c--ccCceeeeeccccceeeccccCceEEeec
Confidence                 3467777777643333221  2  34555666666679999998888877653

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.74  E-value=4e-05  Score=73.06  Aligned_cols=218  Identities=15%  Similarity=0.153  Sum_probs=119.1

Q ss_pred             cEEEcCCCcEEEEecCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCCEEEEeCCCcEEEEc-CCCcEEEeeecCCcc
Q 017371           83 DASMDKNGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDGVENFLSYVNGSK  159 (372)
Q Consensus        83 ~i~~d~~G~l~v~~~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~-~~g~~~l~~~~~~~~  159 (372)
                      +.+++ ++.+|+++.+|.|+.+|  +|+...-....+....+.+.+ ++.+|+++....++.+| .+|...+.....+..
T Consensus        60 ~p~v~-~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~-~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~  137 (377)
T TIGR03300        60 QPAVA-GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGAD-GGLVFVGTEKGEVIALDAEDGKELWRAKLSSEV  137 (377)
T ss_pred             ceEEE-CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEc-CCEEEEEcCCCEEEEEECCCCcEeeeeccCcee
Confidence            34444 67999999999999999  676432222222222245554 67899987666699999 678333322222221


Q ss_pred             cccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCc------ceEEEecCCCEE
Q 017371          160 LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA------NGVALSRDEDYV  233 (372)
Q Consensus       160 ~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~------~gi~~~~dg~~l  233 (372)
                      ..   ...+ .++.+|+..                  ..+.|+.+|+++|+..+.......+      ....+. + +.+
T Consensus       138 ~~---~p~v-~~~~v~v~~------------------~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~-~~v  193 (377)
T TIGR03300       138 LS---PPLV-ANGLVVVRT------------------NDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-D-GGV  193 (377)
T ss_pred             ec---CCEE-ECCEEEEEC------------------CCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-C-CEE
Confidence            11   1122 356777742                  4578999999888876543221110      111222 3 346


Q ss_pred             EEEeCCCCeEEEEEccCCCCcceeeeccCCCCC---------CceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHH
Q 017371          234 VVCESWKFRCRKYWLKGERKGKLETFAENLPGA---------PDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLA  304 (372)
Q Consensus       234 ~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~---------p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~  304 (372)
                      |+.. .+.+++.+++.+.+..-...+. ...+.         .....+ .++.+|+++..                    
T Consensus       194 ~~~~-~~g~v~ald~~tG~~~W~~~~~-~~~g~~~~~~~~~~~~~p~~-~~~~vy~~~~~--------------------  250 (377)
T TIGR03300       194 LVGF-AGGKLVALDLQTGQPLWEQRVA-LPKGRTELERLVDVDGDPVV-DGGQVYAVSYQ--------------------  250 (377)
T ss_pred             EEEC-CCCEEEEEEccCCCEeeeeccc-cCCCCCchhhhhccCCccEE-ECCEEEEEEcC--------------------
Confidence            5544 4567888887543211100110 00000         001112 25678887654                    


Q ss_pred             hcCccccccccCCCceEEEEECC-CCcEEEEEECCCCCeeccceeeEEECCEEEEEeCCCCeEEEEeC
Q 017371          305 AYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL  371 (372)
Q Consensus       305 ~~p~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~igs~~~~~i~~~~~  371 (372)
                                     +.++++|. +|+.+.....  +    ........++++|+++. ...|..++.
T Consensus       251 ---------------g~l~a~d~~tG~~~W~~~~--~----~~~~p~~~~~~vyv~~~-~G~l~~~d~  296 (377)
T TIGR03300       251 ---------------GRVAALDLRSGRVLWKRDA--S----SYQGPAVDDNRLYVTDA-DGVVVALDR  296 (377)
T ss_pred             ---------------CEEEEEECCCCcEEEeecc--C----CccCceEeCCEEEEECC-CCeEEEEEC
Confidence                           57888885 6887765542  1    12334456788998874 345666554

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=98.74  E-value=2.1e-05  Score=69.99  Aligned_cols=222  Identities=17%  Similarity=0.173  Sum_probs=136.2

Q ss_pred             ccEEEcCCC-cEEEEecCCeEEEEe-C-C-ceEEEEecCCCcccCeEEcCCCCEEEEeC-CCcEEEEc-CCC--cEEEee
Q 017371           82 EDASMDKNG-VIYTATRDGWIKRLQ-D-G-TWVNWKFIDSQTLVGLTSTKEGHLIICDN-ANGLHKVS-EDG--VENFLS  153 (372)
Q Consensus        82 ~~i~~d~~G-~l~v~~~~g~i~~~~-~-g-~~~~~~~~~~~p~~gl~~d~dG~l~v~~~-~~gv~~~~-~~g--~~~l~~  153 (372)
                      ..+.+.+++ .++++..+|.|..++ . + ....+........ .+.+.++++++++.. ...+..++ .++  ...+. 
T Consensus        55 ~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-  132 (289)
T cd00200          55 RDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVS-SVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR-  132 (289)
T ss_pred             eEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEE-EEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec-
Confidence            367777777 677777899999998 3 3 3344443333456 889998888887766 44577777 444  22222 


Q ss_pred             ecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCC-ccCcceEEEecCCCE
Q 017371          154 YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSRDEDY  232 (372)
Q Consensus       154 ~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~-~~~~~gi~~~~dg~~  232 (372)
                      .    ....+..+.+.+++.++++..                 .++.|..+|..+++....... ......++++++++.
T Consensus       133 ~----~~~~i~~~~~~~~~~~l~~~~-----------------~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~  191 (289)
T cd00200         133 G----HTDWVNSVAFSPDGTFVASSS-----------------QDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEK  191 (289)
T ss_pred             c----CCCcEEEEEEcCcCCEEEEEc-----------------CCCcEEEEEccccccceeEecCccccceEEECCCcCE
Confidence            1    112466888988887776532                 356788888865554333322 224567899999987


Q ss_pred             EEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccc
Q 017371          233 VVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQ  312 (372)
Q Consensus       233 l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~  312 (372)
                      ++++.. ++.|..|++...+.  ...+. ...+....+.+++++.++++...                            
T Consensus       192 l~~~~~-~~~i~i~d~~~~~~--~~~~~-~~~~~i~~~~~~~~~~~~~~~~~----------------------------  239 (289)
T cd00200         192 LLSSSS-DGTIKLWDLSTGKC--LGTLR-GHENGVNSVAFSPDGYLLASGSE----------------------------  239 (289)
T ss_pred             EEEecC-CCcEEEEECCCCce--ecchh-hcCCceEEEEEcCCCcEEEEEcC----------------------------
Confidence            777765 66788888764211  11121 12234677889998888887763                            


Q ss_pred             cccCCCceEEEEECCC-CcEEEEEECCCCCeeccceeeEEEC--CEEEEEeCCCCeEEEE
Q 017371          313 FITLGGGAHLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQVD--NHLYVISLTSNFIGKV  369 (372)
Q Consensus       313 ~~~~~~~~~v~~~~~~-g~~~~~~~~~~g~~~~~~t~~~~~~--g~L~igs~~~~~i~~~  369 (372)
                            .+.+..++.+ ++....+....+    .+.++....  ..|+.++ ....|.++
T Consensus       240 ------~~~i~i~~~~~~~~~~~~~~~~~----~i~~~~~~~~~~~l~~~~-~d~~i~iw  288 (289)
T cd00200         240 ------DGTIRVWDLRTGECVQTLSGHTN----SVTSLAWSPDGKRLASGS-ADGTIRIW  288 (289)
T ss_pred             ------CCcEEEEEcCCceeEEEccccCC----cEEEEEECCCCCEEEEec-CCCeEEec
Confidence                  3466666644 666666653322    366666653  4555555 44455543

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=98.69  E-value=1.8e-06  Score=79.11  Aligned_cols=168  Identities=23%  Similarity=0.311  Sum_probs=105.1

Q ss_pred             ceEecCCCCCCCccEEEcCCC-cEEEEecCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCCEEEEeCCCcEEEEcCC
Q 017371           70 FIKVGEGSVNHPEDASMDKNG-VIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSED  146 (372)
Q Consensus        70 ~~~~~~g~~~~p~~i~~d~~G-~l~v~~~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~~~  146 (372)
                      ...++...+.+||.+.+|+.| --|++-.+|++..|.  +..+..+......+.         .-..++.    ..++  
T Consensus        45 ~~l~~~~~~~g~E~~~fd~~~~gp~~~v~dg~il~~~g~~~Gwv~~~~~~~s~~---------~~~~~~~----~~~~--  109 (376)
T KOG1520|consen   45 GKLIPNNHLTGPESLLFDPQGGGPYTGVVDGRILKYTGNDDGWVKFADTKDSTN---------RSQCCDP----GSFE--  109 (376)
T ss_pred             cccccccccCChhhheecccCCCceEEEECCceEEEeccCceEEEEEecccccc---------ccccCCC----ccee--
Confidence            334444457899999999755 678888888888886  223333322210000         0001100    0000  


Q ss_pred             CcEEEeeecCCcccccccceEEccCC-cEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeC-----CccC
Q 017371          147 GVENFLSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-----GFYF  220 (372)
Q Consensus       147 g~~~l~~~~~~~~~~~~~~l~~d~dG-~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~-----~~~~  220 (372)
                               ....-..|-+|+++..| ++||+|+-                  =+|+.++++++..+.+.+     .+.+
T Consensus       110 ---------~e~~CGRPLGl~f~~~ggdL~VaDAY------------------lGL~~V~p~g~~a~~l~~~~~G~~~kf  162 (376)
T KOG1520|consen  110 ---------TEPLCGRPLGIRFDKKGGDLYVADAY------------------LGLLKVGPEGGLAELLADEAEGKPFKF  162 (376)
T ss_pred             ---------cccccCCcceEEeccCCCeEEEEecc------------------eeeEEECCCCCcceeccccccCeeeee
Confidence                     01112356699999877 99999862                  369999999877666543     2567


Q ss_pred             cceEEEecCCCEEEEEeCCC-----------------CeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEe
Q 017371          221 ANGVALSRDEDYVVVCESWK-----------------FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII  283 (372)
Q Consensus       221 ~~gi~~~~dg~~l~v~~~~~-----------------~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~  283 (372)
                      .|++.++++| .+|++|+..                 +|+.+||..+   ...+++.+++. +|+|+++.+|+.+.+.+-
T Consensus       163 ~N~ldI~~~g-~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~t---K~~~VLld~L~-F~NGlaLS~d~sfvl~~E  237 (376)
T KOG1520|consen  163 LNDLDIDPEG-VVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPST---KVTKVLLDGLY-FPNGLALSPDGSFVLVAE  237 (376)
T ss_pred             cCceeEcCCC-eEEEeccccccchhheEEeeecCCCccceEEecCcc---cchhhhhhccc-ccccccCCCCCCEEEEEe
Confidence            8999999955 599998743                 3566666532   33345555553 699999999998666654


Q ss_pred             c
Q 017371          284 K  284 (372)
Q Consensus       284 ~  284 (372)
                      .
T Consensus       238 t  238 (376)
T KOG1520|consen  238 T  238 (376)
T ss_pred             e
Confidence            4

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=98.66  E-value=8e-06  Score=78.31  Aligned_cols=167  Identities=14%  Similarity=0.129  Sum_probs=98.6

Q ss_pred             eEEEEecCCCcccCeEEcCCCCEEEEeCC-CcEEEEcC-CC-cEEEee---ecCCcccccccceEEccC-------CcEE
Q 017371          109 WVNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVSE-DG-VENFLS---YVNGSKLRFANDVVEASD-------GSLY  175 (372)
Q Consensus       109 ~~~~~~~~~~p~~gl~~d~dG~l~v~~~~-~gv~~~~~-~g-~~~l~~---~~~~~~~~~~~~l~~d~d-------G~i~  175 (372)
                      ++.+......|. +|++.+||++||++.. ..|++++. ++ .+.+..   ...........+|+++|+       +.||
T Consensus        22 ~~~va~GL~~Pw-~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lY  100 (454)
T TIGR03606        22 KKVLLSGLNKPW-ALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVY  100 (454)
T ss_pred             EEEEECCCCCce-EEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEE
Confidence            345556677899 9999999999999863 45888873 34 322211   111111345668888765       4689


Q ss_pred             EEeCCCCCCCcccccccccccCCCeEEEEeCCC--C---eEEEEeCCc-----cCcceEEEecCCCEEEEEeCCC-----
Q 017371          176 FTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS--N---ITTLVADGF-----YFANGVALSRDEDYVVVCESWK-----  240 (372)
Q Consensus       176 vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t--~---~~~~~~~~~-----~~~~gi~~~~dg~~l~v~~~~~-----  240 (372)
                      ++-+...-+        .+.....+|.|+..+.  .   ..+.+...+     ++-..++|+|||. ||++.-..     
T Consensus       101 vsyt~~~~~--------~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~-LYVs~GD~g~~~~  171 (454)
T TIGR03606       101 ISYTYKNGD--------KELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGK-IYYTIGEQGRNQG  171 (454)
T ss_pred             EEEeccCCC--------CCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCc-EEEEECCCCCCCc
Confidence            974320000        0000235787775431  1   123343333     3345689999996 88853221     


Q ss_pred             ---------------------------CeEEEEEccCCCC--------cceeeeccCCCCCCceeEEcCCCCEEEEEecC
Q 017371          241 ---------------------------FRCRKYWLKGERK--------GKLETFAENLPGAPDNINLAPDGTFWIAIIKL  285 (372)
Q Consensus       241 ---------------------------~~i~~~~~~g~~~--------~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~  285 (372)
                                                 ..|+|++.+|.-.        ...+++.-.+ ..|-++++|++|.||+++.+.
T Consensus       172 ~n~~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~-RNp~Gla~dp~G~Lw~~e~Gp  250 (454)
T TIGR03606       172 ANFFLPNQAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGH-RNPQGLAFTPDGTLYASEQGP  250 (454)
T ss_pred             ccccCcchhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEec-cccceeEECCCCCEEEEecCC
Confidence                                       2688888876310        0123443222 348899999999999999875


Q ss_pred             c
Q 017371          286 D  286 (372)
Q Consensus       286 ~  286 (372)
                      +
T Consensus       251 ~  251 (454)
T TIGR03606       251 N  251 (454)
T ss_pred             C
Confidence            4

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=98.61  E-value=7.1e-06  Score=72.39  Aligned_cols=113  Identities=21%  Similarity=0.232  Sum_probs=73.2

Q ss_pred             CCcccCeEEcCCCCEEEEeCCCcEEEEcCCC---cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccc
Q 017371          117 SQTLVGLTSTKEGHLIICDNANGLHKVSEDG---VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDIL  193 (372)
Q Consensus       117 ~~p~~gl~~d~dG~l~v~~~~~gv~~~~~~g---~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~  193 (372)
                      +... ||+.| ...||++|....++.+|+..   ...+.-...+.+....|-|-.- +|.||.-..              
T Consensus       130 ~EGW-GLt~d-g~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW--------------  192 (264)
T PF05096_consen  130 GEGW-GLTSD-GKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVW--------------  192 (264)
T ss_dssp             SS---EEEEC-SSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEET--------------
T ss_pred             Ccce-EEEcC-CCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeC--------------
Confidence            4567 88866 45789988777899998543   3333323455666677777774 788887432              


Q ss_pred             cccCCCeEEEEeCCCCeEEEEeCC----------------ccCcceEEEecCCCEEEEEeCCCCeEEEEEcc
Q 017371          194 EGKPHGQLLKYDPSSNITTLVADG----------------FYFANGVALSRDEDYVVVCESWKFRCRKYWLK  249 (372)
Q Consensus       194 ~~~~~g~v~~~d~~t~~~~~~~~~----------------~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~  249 (372)
                         .+..|+++||.+|++.-..+-                ..--||||++++++.+||+.-.-..++.+.+.
T Consensus       193 ---~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp~lyeV~l~  261 (264)
T PF05096_consen  193 ---QTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLWPKLYEVKLV  261 (264)
T ss_dssp             ---TSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-SEEEEEEEE
T ss_pred             ---CCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCCCceEEEEEE
Confidence               356899999999998875421                12358999999999999998777788887653

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.60  E-value=7e-05  Score=70.91  Aligned_cols=168  Identities=14%  Similarity=0.159  Sum_probs=98.2

Q ss_pred             cEEEEe-cCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCC-EEEEeCCCcEEEEc-CCC--cEEEeeecCCcccccc
Q 017371           91 VIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNANGLHKVS-EDG--VENFLSYVNGSKLRFA  163 (372)
Q Consensus        91 ~l~v~~-~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~-l~v~~~~~gv~~~~-~~g--~~~l~~~~~~~~~~~~  163 (372)
                      .+|+.. .+|.|..+|  +.++......++.+..++.+.+||+ +||++....+..+| .++  +..+.   .|   ..+
T Consensus         7 l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~---~G---~~~   80 (369)
T PF02239_consen    7 LFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIK---VG---GNP   80 (369)
T ss_dssp             EEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE----S---SEE
T ss_pred             EEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEe---cC---CCc
Confidence            344666 678899999  3443333333344442788899996 88887666688899 555  33332   22   356


Q ss_pred             cceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCc--------cCcceEEEecCCCEEE
Q 017371          164 NDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF--------YFANGVALSRDEDYVV  234 (372)
Q Consensus       164 ~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~--------~~~~gi~~~~dg~~l~  234 (372)
                      .++++.+||+ +|+++.                 ..+.+..+|.+|.+........        ....++.-++.+..++
T Consensus        81 ~~i~~s~DG~~~~v~n~-----------------~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fV  143 (369)
T PF02239_consen   81 RGIAVSPDGKYVYVANY-----------------EPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFV  143 (369)
T ss_dssp             EEEEE--TTTEEEEEEE-----------------ETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEE
T ss_pred             ceEEEcCCCCEEEEEec-----------------CCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEE
Confidence            7899999996 565543                 4568999998876654432211        1223666678887677


Q ss_pred             EEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEe
Q 017371          235 VCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII  283 (372)
Q Consensus       235 v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~  283 (372)
                      ++....++|+.++....+.... ... ....+|.+..+|++|+++++..
T Consensus       144 v~lkd~~~I~vVdy~d~~~~~~-~~i-~~g~~~~D~~~dpdgry~~va~  190 (369)
T PF02239_consen  144 VNLKDTGEIWVVDYSDPKNLKV-TTI-KVGRFPHDGGFDPDGRYFLVAA  190 (369)
T ss_dssp             EEETTTTEEEEEETTTSSCEEE-EEE-E--TTEEEEEE-TTSSEEEEEE
T ss_pred             EEEccCCeEEEEEeccccccce-eee-cccccccccccCcccceeeecc
Confidence            7777778999998765422211 122 2334689999999998765543

...

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=98.59  E-value=0.00016  Score=64.30  Aligned_cols=177  Identities=18%  Similarity=0.239  Sum_probs=104.1

Q ss_pred             CCccEEEcCCC-cEEEEecCCeEEEEe--CCce-EEEEecCCCcccCeEEcCCCC-EEEEeCCCcEEEEc-CCC--cEEE
Q 017371           80 HPEDASMDKNG-VIYTATRDGWIKRLQ--DGTW-VNWKFIDSQTLVGLTSTKEGH-LIICDNANGLHKVS-EDG--VENF  151 (372)
Q Consensus        80 ~p~~i~~d~~G-~l~v~~~~g~i~~~~--~g~~-~~~~~~~~~p~~gl~~d~dG~-l~v~~~~~gv~~~~-~~g--~~~l  151 (372)
                      ...++.+.++| .++++..+|.|..++  +++. ........... .+.+.++++ ++++.....+..++ .++  ...+
T Consensus        11 ~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~   89 (289)
T cd00200          11 GVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVR-DVAASADGTYLASGSSDKTIRLWDLETGECVRTL   89 (289)
T ss_pred             CEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCccee-EEEECCCCCEEEEEcCCCeEEEEEcCcccceEEE
Confidence            45678888876 455566789998888  4432 22222222334 788888885 44444344577777 443  3333


Q ss_pred             eeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCC-ccCcceEEEecCC
Q 017371          152 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSRDE  230 (372)
Q Consensus       152 ~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~-~~~~~gi~~~~dg  230 (372)
                      ...     ...+..+.+.++++++++..                 .++.|..+|..+++....... ......+++++++
T Consensus        90 ~~~-----~~~i~~~~~~~~~~~~~~~~-----------------~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  147 (289)
T cd00200          90 TGH-----TSYVSSVAFSPDGRILSSSS-----------------RDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDG  147 (289)
T ss_pred             ecc-----CCcEEEEEEcCCCCEEEEec-----------------CCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcC
Confidence            211     12456788888888777532                 367899999876654443332 2235678899987


Q ss_pred             CEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCC-EEEEEe
Q 017371          231 DYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAII  283 (372)
Q Consensus       231 ~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwva~~  283 (372)
                      +.++.+ ..++.|..|++...+..  ..+. ...+....+.+.++|+ ++++..
T Consensus       148 ~~l~~~-~~~~~i~i~d~~~~~~~--~~~~-~~~~~i~~~~~~~~~~~l~~~~~  197 (289)
T cd00200         148 TFVASS-SQDGTIKLWDLRTGKCV--ATLT-GHTGEVNSVAFSPDGEKLLSSSS  197 (289)
T ss_pred             CEEEEE-cCCCcEEEEEccccccc--eeEe-cCccccceEEECCCcCEEEEecC
Confidence            755444 44567888887643211  1222 2223467788899984 555443

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.59  E-value=1.7e-05  Score=70.36  Aligned_cols=195  Identities=16%  Similarity=0.208  Sum_probs=108.5

Q ss_pred             CcccCeEEcCC-CCEEEEeCC-CcEEEEcCCC--cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccc
Q 017371          118 QTLVGLTSTKE-GHLIICDNA-NGLHKVSEDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDIL  193 (372)
Q Consensus       118 ~p~~gl~~d~d-G~l~v~~~~-~gv~~~~~~g--~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~  193 (372)
                      .+. ||+++++ +.||..... ..|+.++.+|  ++.+.  ..+  +.-+.+|+.-.+|.+.+++.              
T Consensus        23 e~S-GLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~--l~g--~~D~EgI~y~g~~~~vl~~E--------------   83 (248)
T PF06977_consen   23 ELS-GLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIP--LDG--FGDYEGITYLGNGRYVLSEE--------------   83 (248)
T ss_dssp             -EE-EEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE---SS---SSEEEEEE-STTEEEEEET--------------
T ss_pred             Ccc-ccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEe--CCC--CCCceeEEEECCCEEEEEEc--------------
Confidence            345 9999986 568876544 4588888777  44332  222  45677899988888888653              


Q ss_pred             cccCCCeEEEEeC--CCCeE-----EEEeCCcc-----CcceEEEecCCCEEEEEeCCC-CeEEEEEc--cCCCCccee-
Q 017371          194 EGKPHGQLLKYDP--SSNIT-----TLVADGFY-----FANGVALSRDEDYVVVCESWK-FRCRKYWL--KGERKGKLE-  257 (372)
Q Consensus       194 ~~~~~g~v~~~d~--~t~~~-----~~~~~~~~-----~~~gi~~~~dg~~l~v~~~~~-~~i~~~~~--~g~~~~~~~-  257 (372)
                         ..++|+.++.  .+...     +.+.-++.     .-.|+++++.++.||++.-.. .+|+.+..  .+....... 
T Consensus        84 ---r~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~  160 (248)
T PF06977_consen   84 ---RDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDD  160 (248)
T ss_dssp             ---TTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-
T ss_pred             ---CCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccc
Confidence               3566776654  22211     11221221     235899999988888875433 34666554  111111000 


Q ss_pred             -eec-c-CCCCCCceeEEcCC-CCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEECCCCcEEE
Q 017371          258 -TFA-E-NLPGAPDNINLAPD-GTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIR  333 (372)
Q Consensus       258 -~~~-~-~~~g~p~~i~~d~~-G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~g~~~~  333 (372)
                       .+. . ..-.-|.++.+|+. |++||-+..                                  ..+++++|.+|+++.
T Consensus       161 ~~~~~~~~~~~d~S~l~~~p~t~~lliLS~e----------------------------------s~~l~~~d~~G~~~~  206 (248)
T PF06977_consen  161 QDLDDDKLFVRDLSGLSYDPRTGHLLILSDE----------------------------------SRLLLELDRQGRVVS  206 (248)
T ss_dssp             HHHH-HT--SS---EEEEETTTTEEEEEETT----------------------------------TTEEEEE-TT--EEE
T ss_pred             cccccccceeccccceEEcCCCCeEEEEECC----------------------------------CCeEEEECCCCCEEE
Confidence             011 0 01123788999875 579988776                                  469999999999999


Q ss_pred             EEECCCC-----CeeccceeeEEE-CCEEEEEeCCCCeEEEE
Q 017371          334 NLVDPTG-----QLMSFVTSGLQV-DNHLYVISLTSNFIGKV  369 (372)
Q Consensus       334 ~~~~~~g-----~~~~~~t~~~~~-~g~L~igs~~~~~i~~~  369 (372)
                      .+....|     ..+..+.+++.+ +|+|||.+- -|...++
T Consensus       207 ~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsE-pNlfy~f  247 (248)
T PF06977_consen  207 SLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSE-PNLFYRF  247 (248)
T ss_dssp             EEE-STTGGG-SS---SEEEEEE-TT--EEEEET-TTEEEEE
T ss_pred             EEEeCCcccCcccccCCccEEEECCCCCEEEEcC-CceEEEe
Confidence            8887765     345678999998 599999995 5666554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.52  E-value=8.1e-05  Score=72.35  Aligned_cols=201  Identities=15%  Similarity=0.193  Sum_probs=117.7

Q ss_pred             cEEEcCCCc-EEEEe---cCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCC-EEEEeCCC---cEEEEc-CCC-cEE
Q 017371           83 DASMDKNGV-IYTAT---RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNAN---GLHKVS-EDG-VEN  150 (372)
Q Consensus        83 ~i~~d~~G~-l~v~~---~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~-l~v~~~~~---gv~~~~-~~g-~~~  150 (372)
                      +.++.++|. |++..   ....|+.++  +|+.+.+....+... ..++.+||+ |+++....   .|+.++ .+| .+.
T Consensus       208 ~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~-~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~  286 (433)
T PRK04922        208 SPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGING-APSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR  286 (433)
T ss_pred             cccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCcc-CceECCCCCEEEEEEeCCCCceEEEEECCCCCeEE
Confidence            456677884 55554   234688888  566555543333334 778999996 54442222   488888 556 544


Q ss_pred             EeeecCCcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecC
Q 017371          151 FLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRD  229 (372)
Q Consensus       151 l~~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~d  229 (372)
                      +... .    ......++.+||+ |+++..               ..+...||.+|.++++.+.+..........+++||
T Consensus       287 lt~~-~----~~~~~~~~spDG~~l~f~sd---------------~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpD  346 (433)
T PRK04922        287 LTNH-F----GIDTEPTWAPDGKSIYFTSD---------------RGGRPQIYRVAASGGSAERLTFQGNYNARASVSPD  346 (433)
T ss_pred             CccC-C----CCccceEECCCCCEEEEEEC---------------CCCCceEEEEECCCCCeEEeecCCCCccCEEECCC
Confidence            4221 1    1123568889996 555421               01234699999887777665433233446889999


Q ss_pred             CCEEEEEeCC--CCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcC
Q 017371          230 EDYVVVCESW--KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYP  307 (372)
Q Consensus       230 g~~l~v~~~~--~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p  307 (372)
                      |+.++++...  ...|+.+++++.+   ...+...  .......+.+||+..+....                       
T Consensus       347 G~~Ia~~~~~~~~~~I~v~d~~~g~---~~~Lt~~--~~~~~p~~spdG~~i~~~s~-----------------------  398 (433)
T PRK04922        347 GKKIAMVHGSGGQYRIAVMDLSTGS---VRTLTPG--SLDESPSFAPNGSMVLYATR-----------------------  398 (433)
T ss_pred             CCEEEEEECCCCceeEEEEECCCCC---eEECCCC--CCCCCceECCCCCEEEEEEe-----------------------
Confidence            9999887543  2468888876542   2222211  12345678999974333222                       


Q ss_pred             ccccccccCCCceEEEEECCCCcEEEEEECCCC
Q 017371          308 KLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTG  340 (372)
Q Consensus       308 ~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g  340 (372)
                              ......++.++.+|.....+..+.|
T Consensus       399 --------~~g~~~L~~~~~~g~~~~~l~~~~g  423 (433)
T PRK04922        399 --------EGGRGVLAAVSTDGRVRQRLVSADG  423 (433)
T ss_pred             --------cCCceEEEEEECCCCceEEcccCCC
Confidence                    0113468888888877666654434

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=98.51  E-value=1.2e-05  Score=73.37  Aligned_cols=184  Identities=17%  Similarity=0.252  Sum_probs=108.0

Q ss_pred             ccEEEcCCCcEEEEecC-------------CeEEEEe--CCc-eEEEEec------CCCcccCeEEcC-C-----CCEEE
Q 017371           82 EDASMDKNGVIYTATRD-------------GWIKRLQ--DGT-WVNWKFI------DSQTLVGLTSTK-E-----GHLII  133 (372)
Q Consensus        82 ~~i~~d~~G~l~v~~~~-------------g~i~~~~--~g~-~~~~~~~------~~~p~~gl~~d~-d-----G~l~v  133 (372)
                      -.+.+|+.|+||+-|..             -+|+.||  +++ ++++..+      .+... .+++|. +     +.+|+
T Consensus         4 ~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~ln-dl~VD~~~~~~~~~~aYI   82 (287)
T PF03022_consen    4 QRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLN-DLVVDVRDGNCDDGFAYI   82 (287)
T ss_dssp             EEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEE-EEEEECTTTTS-SEEEEE
T ss_pred             cEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccc-eEEEEccCCCCcceEEEE
Confidence            46889999999998822             2789999  444 3444322      22334 788884 2     46999


Q ss_pred             EeCC-CcEEEEc-CCC--cEEEeeec-----------CCcccc---cccceEEcc---CC-cEEEEeCCCCCCCcccccc
Q 017371          134 CDNA-NGLHKVS-EDG--VENFLSYV-----------NGSKLR---FANDVVEAS---DG-SLYFTVSSSKYLPHEYCLD  191 (372)
Q Consensus       134 ~~~~-~gv~~~~-~~g--~~~l~~~~-----------~~~~~~---~~~~l~~d~---dG-~i~vtd~~~~~~~~~~~~~  191 (372)
                      +|.. .|++.+| .+|  .+++....           .+..+.   ...+++..+   +| .+|+.-.            
T Consensus        83 tD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~l------------  150 (287)
T PF03022_consen   83 TDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPL------------  150 (287)
T ss_dssp             EETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEET------------
T ss_pred             eCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeC------------
Confidence            9987 6899999 777  45443211           111111   133445543   43 4666532            


Q ss_pred             cccccCCCeEEEEeCC------C-------CeEEEEeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCC-ccee
Q 017371          192 ILEGKPHGQLLKYDPS------S-------NITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERK-GKLE  257 (372)
Q Consensus       192 ~~~~~~~g~v~~~d~~------t-------~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~-~~~~  257 (372)
                           ....+|++..+      .       .+++.+.+......|++++++|. +|+++...+.|.+++.+++.. .+.+
T Consensus       151 -----ss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~-ly~~~~~~~aI~~w~~~~~~~~~~~~  224 (287)
T PF03022_consen  151 -----SSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGN-LYFTDVEQNAIGCWDPDGPYTPENFE  224 (287)
T ss_dssp             -----T-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTE-EEEEECCCTEEEEEETTTSB-GCCEE
T ss_pred             -----CCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCc-EEEecCCCCeEEEEeCCCCcCccchh
Confidence                 23356776421      0       12233332224567899999775 999999999999999876422 2333


Q ss_pred             eeccCC--CCCCceeEEcC--CCCEEEEEec
Q 017371          258 TFAENL--PGAPDNINLAP--DGTFWIAIIK  284 (372)
Q Consensus       258 ~~~~~~--~g~p~~i~~d~--~G~lwva~~~  284 (372)
                      .+....  --+|+++.++.  +|.||+.+..
T Consensus       225 ~l~~d~~~l~~pd~~~i~~~~~g~L~v~snr  255 (287)
T PF03022_consen  225 ILAQDPRTLQWPDGLKIDPEGDGYLWVLSNR  255 (287)
T ss_dssp             EEEE-CC-GSSEEEEEE-T--TS-EEEEE-S
T ss_pred             eeEEcCceeeccceeeeccccCceEEEEECc
Confidence            443322  24899999999  9999999865

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=98.50  E-value=4.4e-06  Score=82.37  Aligned_cols=177  Identities=15%  Similarity=0.134  Sum_probs=120.6

Q ss_pred             CccEEEc-CCCcEEEEec-CCeEEEEe--CCceEEE-EecCCCcccCeEEcCCC-CEEEEeCCC---cEEEEcCCC--cE
Q 017371           81 PEDASMD-KNGVIYTATR-DGWIKRLQ--DGTWVNW-KFIDSQTLVGLTSTKEG-HLIICDNAN---GLHKVSEDG--VE  149 (372)
Q Consensus        81 p~~i~~d-~~G~l~v~~~-~g~i~~~~--~g~~~~~-~~~~~~p~~gl~~d~dG-~l~v~~~~~---gv~~~~~~g--~~  149 (372)
                      +-+|.+| .+..+|+++. ...|.+-.  .++.+.+ ....+.|- |||+|.-+ ++|++|+..   ++..+  +|  .+
T Consensus      1027 iVGidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~n~~L~SPE-GiAVDh~~Rn~ywtDS~lD~IevA~L--dG~~rk 1103 (1289)
T KOG1214|consen 1027 IVGIDFDCRERMVYWTDVAGRSISRASLEGAEPETIVNSGLISPE-GIAVDHIRRNMYWTDSVLDKIEVALL--DGSERK 1103 (1289)
T ss_pred             eeeeecccccceEEEeecCCCccccccccCCCCceeecccCCCcc-ceeeeeccceeeeeccccchhheeec--CCceee
Confidence            5567777 5667888884 44565555  4455544 45667889 99999655 699998653   23333  45  34


Q ss_pred             EEeeecCCcccccccceEEcc-CCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEE-EeCCccCcceEEEe
Q 017371          150 NFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VADGFYFANGVALS  227 (372)
Q Consensus       150 ~l~~~~~~~~~~~~~~l~~d~-dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~-~~~~~~~~~gi~~~  227 (372)
                      +|...    .+-.|.+|++|+ .|+||.+|..               +.+..|=+.+.+....++ +.+.+.-|||+.|+
T Consensus      1104 vLf~t----dLVNPR~iv~D~~rgnLYwtDWn---------------RenPkIets~mDG~NrRilin~DigLPNGLtfd 1164 (1289)
T KOG1214|consen 1104 VLFYT----DLVNPRAIVVDPIRGNLYWTDWN---------------RENPKIETSSMDGENRRILINTDIGLPNGLTFD 1164 (1289)
T ss_pred             EEEee----cccCcceEEeecccCceeecccc---------------ccCCcceeeccCCccceEEeecccCCCCCceeC
Confidence            44332    123577999997 5799999864               233345555555333333 34678899999999


Q ss_pred             cCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 017371          228 RDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       228 ~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~  284 (372)
                      |-.+.|-|++.++.|+.....+|.  ++..++ +++ -+|.+|.-+.+. +|-++|.
T Consensus      1165 pfs~~LCWvDAGt~rleC~~p~g~--gRR~i~-~~L-qYPF~itsy~~~-fY~TDWk 1216 (1289)
T KOG1214|consen 1165 PFSKLLCWVDAGTKRLECTLPDGT--GRRVIQ-NNL-QYPFSITSYADH-FYHTDWK 1216 (1289)
T ss_pred             cccceeeEEecCCcceeEecCCCC--cchhhh-hcc-cCceeeeecccc-ceeeccc
Confidence            999999999999999999988764  333333 233 379999888876 8888886

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.50  E-value=0.00011  Score=71.72  Aligned_cols=200  Identities=14%  Similarity=0.117  Sum_probs=116.9

Q ss_pred             cEEEcCCCc-EEEEe-cC--CeEEEEe--CCceEEEEecCCCcccCeEEcCCCC-EEEEeCCC---cEEEEc-CCC-cEE
Q 017371           83 DASMDKNGV-IYTAT-RD--GWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNAN---GLHKVS-EDG-VEN  150 (372)
Q Consensus        83 ~i~~d~~G~-l~v~~-~~--g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~-l~v~~~~~---gv~~~~-~~g-~~~  150 (372)
                      +..+.+||. |++.. .+  ..|+.++  +|+.+.+....+... ..++.|||+ |+++....   .|+.++ .++ .+.
T Consensus       222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~-~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~  300 (448)
T PRK04792        222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGING-APRFSPDGKKLALVLSKDGQPEIYVVDIATKALTR  300 (448)
T ss_pred             CceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcC-CeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEE
Confidence            456788884 54443 33  3688888  566555443333334 778999997 65543222   388888 555 544


Q ss_pred             EeeecCCcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecC
Q 017371          151 FLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRD  229 (372)
Q Consensus       151 l~~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~d  229 (372)
                      +... .    ......++.+||+ |+++..               ..+...||++|.++++.+.+........+.+++||
T Consensus       301 lt~~-~----~~~~~p~wSpDG~~I~f~s~---------------~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpD  360 (448)
T PRK04792        301 ITRH-R----AIDTEPSWHPDGKSLIFTSE---------------RGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPD  360 (448)
T ss_pred             CccC-C----CCccceEECCCCCEEEEEEC---------------CCCCceEEEEECCCCCEEEEecCCCCCcCeeECCC
Confidence            4221 1    1233567888985 555421               11345799999988887765422223345789999


Q ss_pred             CCEEEEEeCCC--CeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCC-EEEEEecCchhHHHHhhcchhHHHHHHhc
Q 017371          230 EDYVVVCESWK--FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAY  306 (372)
Q Consensus       230 g~~l~v~~~~~--~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~r~~~~~~  306 (372)
                      |++++++...+  .+|+.+++++.+.   ..+...  .......++++|+ |+++....                     
T Consensus       361 G~~l~~~~~~~g~~~I~~~dl~~g~~---~~lt~~--~~d~~ps~spdG~~I~~~~~~~---------------------  414 (448)
T PRK04792        361 GRSMIMVNRTNGKFNIARQDLETGAM---QVLTST--RLDESPSVAPNGTMVIYSTTYQ---------------------  414 (448)
T ss_pred             CCEEEEEEecCCceEEEEEECCCCCe---EEccCC--CCCCCceECCCCCEEEEEEecC---------------------
Confidence            99998876533  4688888766432   222211  1122346888886 33333321                     


Q ss_pred             CccccccccCCCceEEEEECCCCcEEEEEECCCC
Q 017371          307 PKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTG  340 (372)
Q Consensus       307 p~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g  340 (372)
                                 ....++.++.+|+....+..+.|
T Consensus       415 -----------g~~~l~~~~~~G~~~~~l~~~~g  437 (448)
T PRK04792        415 -----------GKQVLAAVSIDGRFKARLPAGQG  437 (448)
T ss_pred             -----------CceEEEEEECCCCceEECcCCCC
Confidence                       12347777888887776655444

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=98.48  E-value=5.8e-05  Score=67.77  Aligned_cols=191  Identities=19%  Similarity=0.251  Sum_probs=117.9

Q ss_pred             CCCCCccEEEcCCCcEEEEecCCeEEEE---e----CCce-----EEEE----ecCC--CcccCeEEcCCCCEEEEeCC-
Q 017371           77 SVNHPEDASMDKNGVIYTATRDGWIKRL---Q----DGTW-----VNWK----FIDS--QTLVGLTSTKEGHLIICDNA-  137 (372)
Q Consensus        77 ~~~~p~~i~~d~~G~l~v~~~~g~i~~~---~----~g~~-----~~~~----~~~~--~p~~gl~~d~dG~l~v~~~~-  137 (372)
                      .+..|.+++++++ .||+++.. +|+++   +    .++.     ..+.    ...|  +.+ .|++ .++++|+.++. 
T Consensus        47 ~F~r~MGl~~~~~-~l~~~t~~-qiw~f~~~~n~l~~~~~~~~~D~~yvPr~~~~TGdidiH-dia~-~~~~l~fVNT~f  122 (335)
T TIGR03032        47 TFPRPMGLAVSPQ-SLTLGTRY-QLWRFANVDNLLPAGQTHPGYDRLYVPRASYVTGDIDAH-DLAL-GAGRLLFVNTLF  122 (335)
T ss_pred             ccCccceeeeeCC-eEEEEEcc-eeEEcccccccccccccCCCCCeEEeeeeeeeccCcchh-heee-cCCcEEEEECcc
Confidence            3678999999764 79999843 58888   2    1111     0111    1111  234 7888 57788888765 


Q ss_pred             CcEEEEcCCC-cEE-----EeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeE
Q 017371          138 NGLHKVSEDG-VEN-----FLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT  211 (372)
Q Consensus       138 ~gv~~~~~~g-~~~-----l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~  211 (372)
                      +-+..+++.- +.+     +.+....+.-=..|++|.....--|+|--+..=....|    .+...+|++. +|..++  
T Consensus       123 SCLatl~~~~SF~P~WkPpFIs~la~eDRCHLNGlA~~~g~p~yVTa~~~sD~~~gW----R~~~~~gG~v-idv~s~--  195 (335)
T TIGR03032       123 SCLATVSPDYSFVPLWKPPFISKLAPEDRCHLNGMALDDGEPRYVTALSQSDVADGW----REGRRDGGCV-IDIPSG--  195 (335)
T ss_pred             eeEEEECCCCccccccCCccccccCccCceeecceeeeCCeEEEEEEeeccCCcccc----cccccCCeEE-EEeCCC--
Confidence            5677887543 222     11211111112568999965445777643311001111    1233455555 677656  


Q ss_pred             EEEeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCC-EEEEEecCc
Q 017371          212 TLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLD  286 (372)
Q Consensus       212 ~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwva~~~~~  286 (372)
                      +++++++.+|.+..|. ||+ ||+++++.+.+.+++.++   ++.+... ..+|+|.|+.+.  |+ ++|+....|
T Consensus       196 evl~~GLsmPhSPRWh-dgr-LwvldsgtGev~~vD~~~---G~~e~Va-~vpG~~rGL~f~--G~llvVgmSk~R  263 (335)
T TIGR03032       196 EVVASGLSMPHSPRWY-QGK-LWLLNSGRGELGYVDPQA---GKFQPVA-FLPGFTRGLAFA--GDFAFVGLSKLR  263 (335)
T ss_pred             CEEEcCccCCcCCcEe-CCe-EEEEECCCCEEEEEcCCC---CcEEEEE-ECCCCCccccee--CCEEEEEecccc
Confidence            4578999999999987 454 999999999999999753   3445554 578999999998  65 556666655

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=98.47  E-value=1.4e-06  Score=63.64  Aligned_cols=82  Identities=34%  Similarity=0.582  Sum_probs=61.1

Q ss_pred             cceEEccCCcEEEEeCCCCCCCcccc--cccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCCCC
Q 017371          164 NDVVEASDGSLYFTVSSSKYLPHEYC--LDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKF  241 (372)
Q Consensus       164 ~~l~~d~dG~i~vtd~~~~~~~~~~~--~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~  241 (372)
                      |+|+.-....+|+|+..  |-...+.  .+...+.+.+.|+.||+  ++.+.+++++.+||||++++|+++|||++....
T Consensus         1 NDIvavG~~sFy~TNDh--yf~~~~l~~lE~~l~~~~~~Vvyyd~--~~~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~   76 (86)
T PF01731_consen    1 NDIVAVGPDSFYVTNDH--YFTDPFLRLLETYLGLPWGNVVYYDG--KEVKVVASGFSFANGIAISPDKKYLYVASSLAH   76 (86)
T ss_pred             CCEEEECcCcEEEECch--hhCcHHHHHHHHHhcCCCceEEEEeC--CEeEEeeccCCCCceEEEcCCCCEEEEEeccCC
Confidence            35555556678888764  2222221  22333456788999998  578889999999999999999999999999999


Q ss_pred             eEEEEEcc
Q 017371          242 RCRKYWLK  249 (372)
Q Consensus       242 ~i~~~~~~  249 (372)
                      .|..|...
T Consensus        77 ~I~vy~~~   84 (86)
T PF01731_consen   77 SIHVYKRH   84 (86)
T ss_pred             eEEEEEec
Confidence            99998753

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.47  E-value=0.00017  Score=70.87  Aligned_cols=185  Identities=16%  Similarity=0.234  Sum_probs=125.1

Q ss_pred             CCCCCCccEEEcCCCcEEEE-ecCCeEEEEe-CCc--eEEEEecCCCcccCeEEcCCCCEEEEeCCCc-EEEEc-CCC--
Q 017371           76 GSVNHPEDASMDKNGVIYTA-TRDGWIKRLQ-DGT--WVNWKFIDSQTLVGLTSTKEGHLIICDNANG-LHKVS-EDG--  147 (372)
Q Consensus        76 g~~~~p~~i~~d~~G~l~v~-~~~g~i~~~~-~g~--~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~g-v~~~~-~~g--  147 (372)
                      |.+..-.+++..|||.+.++ ..||+|..|+ ...  +.+|........ ++.+...|+..++..-.| |..+| ...  
T Consensus       348 gH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt-~v~f~~~g~~llssSLDGtVRAwDlkRYrN  426 (893)
T KOG0291|consen  348 GHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVT-AVQFTARGNVLLSSSLDGTVRAWDLKRYRN  426 (893)
T ss_pred             ccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceE-EEEEEecCCEEEEeecCCeEEeeeecccce
Confidence            55667788999999966554 4899999999 332  445555555566 899999999887765545 66677 444  


Q ss_pred             cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcc-eEEE
Q 017371          148 VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFAN-GVAL  226 (372)
Q Consensus       148 ~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~-gi~~  226 (372)
                      .+.+..+.+    .....+++|+.|.|.++-+.                ..-.|+.++.+||+..-+..+...|. ++++
T Consensus       427 fRTft~P~p----~QfscvavD~sGelV~AG~~----------------d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f  486 (893)
T KOG0291|consen  427 FRTFTSPEP----IQFSCVAVDPSGELVCAGAQ----------------DSFEIFVWSVQTGQLLDILSGHEGPVSGLSF  486 (893)
T ss_pred             eeeecCCCc----eeeeEEEEcCCCCEEEeecc----------------ceEEEEEEEeecCeeeehhcCCCCcceeeEE
Confidence            555432211    34458999999998886331                22358888889999888888877774 6899


Q ss_pred             ecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCC-CEEEEEecC
Q 017371          227 SRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDG-TFWIAIIKL  285 (372)
Q Consensus       227 ~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G-~lwva~~~~  285 (372)
                      +++++ ++++.+.+..|..+++-.. .++.|.+.  .....-++.+-||| .+-|++...
T Consensus       487 ~~~~~-~LaS~SWDkTVRiW~if~s-~~~vEtl~--i~sdvl~vsfrPdG~elaVaTldg  542 (893)
T KOG0291|consen  487 SPDGS-LLASGSWDKTVRIWDIFSS-SGTVETLE--IRSDVLAVSFRPDGKELAVATLDG  542 (893)
T ss_pred             ccccC-eEEeccccceEEEEEeecc-CceeeeEe--eccceeEEEEcCCCCeEEEEEecc
Confidence            99998 6777777887877776442 23344432  11123456777888 577777653

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.47  E-value=0.00026  Score=68.92  Aligned_cols=155  Identities=15%  Similarity=0.083  Sum_probs=90.9

Q ss_pred             eEEEEe-CCc-eEEEEecCCCcccCeEEcCCCC-EEEEeCC---CcEEEEc-CCC-cEEEeeecCCcccccccceEEccC
Q 017371          100 WIKRLQ-DGT-WVNWKFIDSQTLVGLTSTKEGH-LIICDNA---NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASD  171 (372)
Q Consensus       100 ~i~~~~-~g~-~~~~~~~~~~p~~gl~~d~dG~-l~v~~~~---~gv~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~d~d  171 (372)
                      +|+.+| +|. .+.+........ ..++.|||+ |..+...   ..|+.++ ..| .+.+.. ..+    .....++.+|
T Consensus       183 ~l~~~d~dg~~~~~lt~~~~~v~-~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~-~~g----~~~~~~~SPD  256 (435)
T PRK05137        183 RLAIMDQDGANVRYLTDGSSLVL-TPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGN-FPG----MTFAPRFSPD  256 (435)
T ss_pred             EEEEECCCCCCcEEEecCCCCeE-eeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeec-CCC----cccCcEECCC
Confidence            566666 443 334433323344 788999996 4333221   3588888 566 544432 122    2335688899


Q ss_pred             Cc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCC--CCeEEEEEc
Q 017371          172 GS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW--KFRCRKYWL  248 (372)
Q Consensus       172 G~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~--~~~i~~~~~  248 (372)
                      |+ |+++..               ......||.+|.++++.+.+...........|+|||+.++++...  ...|+++++
T Consensus       257 G~~la~~~~---------------~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~  321 (435)
T PRK05137        257 GRKVVMSLS---------------QGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNA  321 (435)
T ss_pred             CCEEEEEEe---------------cCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEEC
Confidence            95 555422               113457999999888877665443334467899999988876532  357999988


Q ss_pred             cCCCCcceeeeccCCCCCCceeEEcCCCCEE
Q 017371          249 KGERKGKLETFAENLPGAPDNINLAPDGTFW  279 (372)
Q Consensus       249 ~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lw  279 (372)
                      ++....   .+.. ..+........+||+..
T Consensus       322 ~g~~~~---~lt~-~~~~~~~~~~SpdG~~i  348 (435)
T PRK05137        322 DGSNPR---RISF-GGGRYSTPVWSPRGDLI  348 (435)
T ss_pred             CCCCeE---Eeec-CCCcccCeEECCCCCEE
Confidence            764322   2221 12223446778888643

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.44  E-value=8.6e-05  Score=71.22  Aligned_cols=216  Identities=12%  Similarity=0.136  Sum_probs=119.0

Q ss_pred             CCcEEEEecCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCCEEEEeCCCcEEEEc-CCCcEEEeeecCCccc--ccc
Q 017371           89 NGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDGVENFLSYVNGSKL--RFA  163 (372)
Q Consensus        89 ~G~l~v~~~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~-~~g~~~l~~~~~~~~~--~~~  163 (372)
                      ++.+|+++.+|.++.+|  +|+...-....+.......+. +|.+|+......++.+| .+|...+........+  ...
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~-~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~  198 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVS-DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGE  198 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEE-CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCC
Confidence            57899999889999999  676433222222222122333 67888886555699999 6783333222111110  001


Q ss_pred             cceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcce---------EEEec--CCCE
Q 017371          164 NDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANG---------VALSR--DEDY  232 (372)
Q Consensus       164 ~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~g---------i~~~~--dg~~  232 (372)
                      ..-+++ +|.+|+..                  .+|.++.+|.++|+..+... ...|.+         +..+|  .++.
T Consensus       199 ~sP~v~-~~~v~~~~------------------~~g~v~a~d~~~G~~~W~~~-~~~~~~~~~~~~~~~~~~sP~v~~~~  258 (394)
T PRK11138        199 SAPATA-FGGAIVGG------------------DNGRVSAVLMEQGQLIWQQR-ISQPTGATEIDRLVDVDTTPVVVGGV  258 (394)
T ss_pred             CCCEEE-CCEEEEEc------------------CCCEEEEEEccCChhhheec-cccCCCccchhcccccCCCcEEECCE
Confidence            111232 46677753                  46789999998887654321 111110         00111  2446


Q ss_pred             EEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccc
Q 017371          233 VVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQ  312 (372)
Q Consensus       233 l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~  312 (372)
                      +|++.. ++.++.++..+.+.    .+..... .+..+.. .+|++|+++..                            
T Consensus       259 vy~~~~-~g~l~ald~~tG~~----~W~~~~~-~~~~~~~-~~~~vy~~~~~----------------------------  303 (394)
T PRK11138        259 VYALAY-NGNLVALDLRSGQI----VWKREYG-SVNDFAV-DGGRIYLVDQN----------------------------  303 (394)
T ss_pred             EEEEEc-CCeEEEEECCCCCE----EEeecCC-CccCcEE-ECCEEEEEcCC----------------------------
Confidence            888764 56799998864321    2221111 1223333 36789988754                            


Q ss_pred             cccCCCceEEEEECC-CCcEEEEEECCCCCeeccceeeEEECCEEEEEeCCCCeEEEEeC
Q 017371          313 FITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL  371 (372)
Q Consensus       313 ~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~igs~~~~~i~~~~~  371 (372)
                             +.++++|. +|+.+.......+.   ..++....+++||+++..+ +|..++.
T Consensus       304 -------g~l~ald~~tG~~~W~~~~~~~~---~~~sp~v~~g~l~v~~~~G-~l~~ld~  352 (394)
T PRK11138        304 -------DRVYALDTRGGVELWSQSDLLHR---LLTAPVLYNGYLVVGDSEG-YLHWINR  352 (394)
T ss_pred             -------CeEEEEECCCCcEEEcccccCCC---cccCCEEECCEEEEEeCCC-EEEEEEC
Confidence                   57888985 57776654332222   2344455688899888654 5555553

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.44  E-value=0.00017  Score=67.29  Aligned_cols=177  Identities=15%  Similarity=0.124  Sum_probs=94.4

Q ss_pred             CCccEEEcCCC-cEEEEe-c-CCeEEEEe--CCceEEEEecCCCcccCeEEcCCCCEEEEeCCCcEEE--EcCCC-cEEE
Q 017371           80 HPEDASMDKNG-VIYTAT-R-DGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHK--VSEDG-VENF  151 (372)
Q Consensus        80 ~p~~i~~d~~G-~l~v~~-~-~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~--~~~~g-~~~l  151 (372)
                      .|+.+++++|| .||+.+ . ++.|..+|  .+++..-....+... .+....+.....|-.+ ....  ++.+| ...-
T Consensus       106 ~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~-vy~t~e~~~~~~~~Dg-~~~~v~~d~~g~~~~~  183 (352)
T TIGR02658       106 YPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYH-IFPTANDTFFMHCRDG-SLAKVGYGTKGNPKIK  183 (352)
T ss_pred             ccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcE-EEEecCCccEEEeecC-ceEEEEecCCCceEEe
Confidence            45589999999 589888 3 78899999  555433223333333 3333333333333222 2333  33444 2211


Q ss_pred             eeec-CC---cccccccceEEcc-CC-cEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEE-----e-C---
Q 017371          152 LSYV-NG---SKLRFANDVVEAS-DG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-----A-D---  216 (372)
Q Consensus       152 ~~~~-~~---~~~~~~~~l~~d~-dG-~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~-----~-~---  216 (372)
                      .... .+   .-+..|   .+.+ +| .+|++                   ..|.|+.+|..+.+....     . .   
T Consensus       184 ~~~vf~~~~~~v~~rP---~~~~~dg~~~~vs-------------------~eG~V~~id~~~~~~~~~~~~~~~~~~~~  241 (352)
T TIGR02658       184 PTEVFHPEDEYLINHP---AYSNKSGRLVWPT-------------------YTGKIFQIDLSSGDAKFLPAIEAFTEAEK  241 (352)
T ss_pred             eeeeecCCccccccCC---ceEcCCCcEEEEe-------------------cCCeEEEEecCCCcceecceeeecccccc
Confidence            1111 11   111222   2233 56 45554                   237899999543322221     1 1   


Q ss_pred             -CccCcce---EEEecCCCEEEEEe---------CCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCC--EEEE
Q 017371          217 -GFYFANG---VALSRDEDYVVVCE---------SWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT--FWIA  281 (372)
Q Consensus       217 -~~~~~~g---i~~~~dg~~l~v~~---------~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~--lwva  281 (372)
                       .-..|-|   +++++|++++||..         ...+.|+.++..+.+   ...... ....|.++++++||.  +|++
T Consensus       242 ~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k---vi~~i~-vG~~~~~iavS~Dgkp~lyvt  317 (352)
T TIGR02658       242 ADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGK---RLRKIE-LGHEIDSINVSQDAKPLLYAL  317 (352)
T ss_pred             ccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCe---EEEEEe-CCCceeeEEECCCCCeEEEEe
Confidence             1123444   99999999999953         233589999976532   211111 223589999999997  4555


Q ss_pred             Eec
Q 017371          282 IIK  284 (372)
Q Consensus       282 ~~~  284 (372)
                      +..
T Consensus       318 n~~  320 (352)
T TIGR02658       318 STG  320 (352)
T ss_pred             CCC
Confidence            544

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.44  E-value=0.00016  Score=69.30  Aligned_cols=213  Identities=16%  Similarity=0.223  Sum_probs=119.7

Q ss_pred             CCcEEEEecCCeEEEEe--CCceEEEEecCCCc------ccCeEEcCCCCEEEEeCCCcEEEEc-CCCcEEEeeecC---
Q 017371           89 NGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQT------LVGLTSTKEGHLIICDNANGLHKVS-EDGVENFLSYVN---  156 (372)
Q Consensus        89 ~G~l~v~~~~g~i~~~~--~g~~~~~~~~~~~p------~~gl~~d~dG~l~v~~~~~gv~~~~-~~g~~~l~~~~~---  156 (372)
                      +|.+|+++.+|.|+.+|  +|+.. |......+      ...-.+. +|.++++.....++.++ .+|...+.....   
T Consensus       160 ~~~v~v~~~~g~l~ald~~tG~~~-W~~~~~~~~~~~~~~~sP~v~-~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~  237 (394)
T PRK11138        160 DGLVLVHTSNGMLQALNESDGAVK-WTVNLDVPSLTLRGESAPATA-FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPT  237 (394)
T ss_pred             CCEEEEECCCCEEEEEEccCCCEe-eeecCCCCcccccCCCCCEEE-CCEEEEEcCCCEEEEEEccCChhhheeccccCC
Confidence            56788888888899998  66643 32222111      0022232 46788876655688888 677111111110   


Q ss_pred             C-ccc---ccc-cceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCC
Q 017371          157 G-SKL---RFA-NDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDED  231 (372)
Q Consensus       157 ~-~~~---~~~-~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~  231 (372)
                      + ...   ... ..-.+ .+|.+|++.                  ..|.++.+|..+|+..+.. .+..+..+++  +++
T Consensus       238 ~~~~~~~~~~~~~sP~v-~~~~vy~~~------------------~~g~l~ald~~tG~~~W~~-~~~~~~~~~~--~~~  295 (394)
T PRK11138        238 GATEIDRLVDVDTTPVV-VGGVVYALA------------------YNGNLVALDLRSGQIVWKR-EYGSVNDFAV--DGG  295 (394)
T ss_pred             CccchhcccccCCCcEE-ECCEEEEEE------------------cCCeEEEEECCCCCEEEee-cCCCccCcEE--ECC
Confidence            0 000   000 01112 367888864                  3578999999999866533 2222333333  355


Q ss_pred             EEEEEeCCCCeEEEEEccCCCCcceeeeccC-CC-CCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCcc
Q 017371          232 YVVVCESWKFRCRKYWLKGERKGKLETFAEN-LP-GAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKL  309 (372)
Q Consensus       232 ~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~-~~-g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~  309 (372)
                      .+|+... +++++.++..+.+    ..+... .. .......+ .+|.+|+++..                         
T Consensus       296 ~vy~~~~-~g~l~ald~~tG~----~~W~~~~~~~~~~~sp~v-~~g~l~v~~~~-------------------------  344 (394)
T PRK11138        296 RIYLVDQ-NDRVYALDTRGGV----ELWSQSDLLHRLLTAPVL-YNGYLVVGDSE-------------------------  344 (394)
T ss_pred             EEEEEcC-CCeEEEEECCCCc----EEEcccccCCCcccCCEE-ECCEEEEEeCC-------------------------
Confidence            6888764 5689999986532    122111 11 11122222 36889998765                         


Q ss_pred             ccccccCCCceEEEEECC-CCcEEEEEECCCCCeeccceeeEEECCEEEEEeCCCCeEEEEe
Q 017371          310 FSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQ  370 (372)
Q Consensus       310 ~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~igs~~~~~i~~~~  370 (372)
                                +.++.+|. +|+++..+....+.   ..+.....+++||+++..+ .|..++
T Consensus       345 ----------G~l~~ld~~tG~~~~~~~~~~~~---~~s~P~~~~~~l~v~t~~G-~l~~~~  392 (394)
T PRK11138        345 ----------GYLHWINREDGRFVAQQKVDSSG---FLSEPVVADDKLLIQARDG-TVYAIT  392 (394)
T ss_pred             ----------CEEEEEECCCCCEEEEEEcCCCc---ceeCCEEECCEEEEEeCCc-eEEEEe
Confidence                      67888885 69998877654322   2344556788999998764 454454

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.43  E-value=0.00017  Score=69.92  Aligned_cols=176  Identities=13%  Similarity=0.085  Sum_probs=104.1

Q ss_pred             ccEEEcCCCc-EEEEe---cCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCC-EEEEeCC---CcEEEEc-CCC-cE
Q 017371           82 EDASMDKNGV-IYTAT---RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA---NGLHKVS-EDG-VE  149 (372)
Q Consensus        82 ~~i~~d~~G~-l~v~~---~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~-l~v~~~~---~gv~~~~-~~g-~~  149 (372)
                      .+..+.+||. |.+..   .+..|+.++  +|+.+.+....+... ..++.|||+ |+++...   ..|+.++ .++ .+
T Consensus       202 ~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~-~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~  280 (429)
T PRK03629        202 MSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNG-APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR  280 (429)
T ss_pred             eeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcC-CeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE
Confidence            3567888884 43332   234678777  566555543334444 788999996 5544222   2488888 556 55


Q ss_pred             EEeeecCCcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEec
Q 017371          150 NFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSR  228 (372)
Q Consensus       150 ~l~~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~  228 (372)
                      .+... .    .......+.+||+ |+++-..               .....||++|.++++.+.+..........+++|
T Consensus       281 ~lt~~-~----~~~~~~~wSPDG~~I~f~s~~---------------~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~Sp  340 (429)
T PRK03629        281 QVTDG-R----SNNTEPTWFPDSQNLAYTSDQ---------------AGRPQVYKVNINGGAPQRITWEGSQNQDADVSS  340 (429)
T ss_pred             EccCC-C----CCcCceEECCCCCEEEEEeCC---------------CCCceEEEEECCCCCeEEeecCCCCccCEEECC
Confidence            44322 1    1234678889996 5443210               123479999998887766644333345688999


Q ss_pred             CCCEEEEEeCCC--CeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEe
Q 017371          229 DEDYVVVCESWK--FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII  283 (372)
Q Consensus       229 dg~~l~v~~~~~--~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~  283 (372)
                      ||+.++++...+  ..|+.+++++..   ...+...  ..-....+.+||...+...
T Consensus       341 DG~~Ia~~~~~~g~~~I~~~dl~~g~---~~~Lt~~--~~~~~p~~SpDG~~i~~~s  392 (429)
T PRK03629        341 DGKFMVMVSSNGGQQHIAKQDLATGG---VQVLTDT--FLDETPSIAPNGTMVIYSS  392 (429)
T ss_pred             CCCEEEEEEccCCCceEEEEECCCCC---eEEeCCC--CCCCCceECCCCCEEEEEE
Confidence            999888765432  458888876543   2233221  1123467889997544443

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.42  E-value=0.00031  Score=68.18  Aligned_cols=202  Identities=15%  Similarity=0.212  Sum_probs=116.5

Q ss_pred             cEEEcCCC-cEEEEe-c--CCeEEEEe--CCceEEEEecCCCcccCeEEcCCCC-EEEEeCC---CcEEEEc-CCC-cEE
Q 017371           83 DASMDKNG-VIYTAT-R--DGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA---NGLHKVS-EDG-VEN  150 (372)
Q Consensus        83 ~i~~d~~G-~l~v~~-~--~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~-l~v~~~~---~gv~~~~-~~g-~~~  150 (372)
                      +.++.++| .|++.+ .  ...|+.++  +|+.+.+....+... ..++.|||+ |+++...   ..++.++ ..+ .+.
T Consensus       200 ~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~-~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~  278 (427)
T PRK02889        200 SPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNS-APAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRR  278 (427)
T ss_pred             cceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCcc-ceEECCCCCEEEEEEccCCCceEEEEECCCCCcEE
Confidence            45677888 455544 2  34588888  566555543334445 788999996 5444222   2477777 444 444


Q ss_pred             EeeecCCcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecC
Q 017371          151 FLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRD  229 (372)
Q Consensus       151 l~~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~d  229 (372)
                      +... .+    ......+.+||+ |+++..               ......||.++.++++.+.+..........+++||
T Consensus       279 lt~~-~~----~~~~~~wSpDG~~l~f~s~---------------~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpD  338 (427)
T PRK02889        279 LTQS-SG----IDTEPFFSPDGRSIYFTSD---------------RGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPD  338 (427)
T ss_pred             CCCC-CC----CCcCeEEcCCCCEEEEEec---------------CCCCcEEEEEECCCCceEEEecCCCCcCceEECCC
Confidence            3221 11    123467889996 555321               01334799999877766655422222335789999


Q ss_pred             CCEEEEEeCCC--CeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcC
Q 017371          230 EDYVVVCESWK--FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYP  307 (372)
Q Consensus       230 g~~l~v~~~~~--~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p  307 (372)
                      |++++++...+  ..|+.+++++.+   ...+...  +......+.+||+..+.....                      
T Consensus       339 G~~Ia~~s~~~g~~~I~v~d~~~g~---~~~lt~~--~~~~~p~~spdg~~l~~~~~~----------------------  391 (427)
T PRK02889        339 GKLLAYISRVGGAFKLYVQDLATGQ---VTALTDT--TRDESPSFAPNGRYILYATQQ----------------------  391 (427)
T ss_pred             CCEEEEEEccCCcEEEEEEECCCCC---eEEccCC--CCccCceECCCCCEEEEEEec----------------------
Confidence            99888765433  368888876542   2222221  123567889999643333320                      


Q ss_pred             ccccccccCCCceEEEEECCCCcEEEEEECCCCC
Q 017371          308 KLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQ  341 (372)
Q Consensus       308 ~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~  341 (372)
                               .....++.++.+|+....+..+.|.
T Consensus       392 ---------~g~~~l~~~~~~g~~~~~l~~~~g~  416 (427)
T PRK02889        392 ---------GGRSVLAAVSSDGRIKQRLSVQGGD  416 (427)
T ss_pred             ---------CCCEEEEEEECCCCceEEeecCCCC
Confidence                     0124577778888877766655553

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.41  E-value=0.00026  Score=62.52  Aligned_cols=170  Identities=17%  Similarity=0.215  Sum_probs=97.7

Q ss_pred             EEcCCCcEEEEecCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCCEEEEeCCCcEEEEc-CCC-cEEE-ee-ecCCc
Q 017371           85 SMDKNGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENF-LS-YVNGS  158 (372)
Q Consensus        85 ~~d~~G~l~v~~~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~-~~g-~~~l-~~-~~~~~  158 (372)
                      ++..+|.+|+++.++.|+.++  +|+.. |......+......-.++.+|++.....++.+| .+| ...- .. ..+..
T Consensus        32 ~~~~~~~v~~~~~~~~l~~~d~~tG~~~-W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~  110 (238)
T PF13360_consen   32 AVPDGGRVYVASGDGNLYALDAKTGKVL-WRFDLPGPISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPA  110 (238)
T ss_dssp             EEEETTEEEEEETTSEEEEEETTTSEEE-EEEECSSCGGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTC
T ss_pred             EEEeCCEEEEEcCCCEEEEEECCCCCEE-EEeeccccccceeeecccccccccceeeeEecccCCcceeeeecccccccc
Confidence            554578999999999999999  67653 333333332133234578899987666799999 888 3222 11 11111


Q ss_pred             ccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcc------------eEEE
Q 017371          159 KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFAN------------GVAL  226 (372)
Q Consensus       159 ~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~------------gi~~  226 (372)
                      ........+++ ++.+|++.                  ..+.|+.+|+++|+...-... ..+.            +-.+
T Consensus       111 ~~~~~~~~~~~-~~~~~~~~------------------~~g~l~~~d~~tG~~~w~~~~-~~~~~~~~~~~~~~~~~~~~  170 (238)
T PF13360_consen  111 GVRSSSSPAVD-GDRLYVGT------------------SSGKLVALDPKTGKLLWKYPV-GEPRGSSPISSFSDINGSPV  170 (238)
T ss_dssp             STB--SEEEEE-TTEEEEEE------------------TCSEEEEEETTTTEEEEEEES-STT-SS--EEEETTEEEEEE
T ss_pred             ccccccCceEe-cCEEEEEe------------------ccCcEEEEecCCCcEEEEeec-CCCCCCcceeeecccccceE
Confidence            12222233443 45677753                  367899999999988664433 2211            2223


Q ss_pred             ecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEE
Q 017371          227 SRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAI  282 (372)
Q Consensus       227 ~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~  282 (372)
                      ..++ .+|++...+ ++..++..+.+   . .+... ...+..+....++.+|+.+
T Consensus       171 ~~~~-~v~~~~~~g-~~~~~d~~tg~---~-~w~~~-~~~~~~~~~~~~~~l~~~~  219 (238)
T PF13360_consen  171 ISDG-RVYVSSGDG-RVVAVDLATGE---K-LWSKP-ISGIYSLPSVDGGTLYVTS  219 (238)
T ss_dssp             CCTT-EEEEECCTS-SEEEEETTTTE---E-EEEEC-SS-ECECEECCCTEEEEEE
T ss_pred             EECC-EEEEEcCCC-eEEEEECCCCC---E-EEEec-CCCccCCceeeCCEEEEEe
Confidence            3344 688877544 46666775432   1 23212 2223444456677899988

...

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.40  E-value=0.0002  Score=68.25  Aligned_cols=122  Identities=14%  Similarity=0.125  Sum_probs=74.3

Q ss_pred             CCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeecc-CCCC-CCceeEEcC
Q 017371          197 PHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAE-NLPG-APDNINLAP  274 (372)
Q Consensus       197 ~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~-~~~g-~p~~i~~d~  274 (372)
                      ..|.++.+|.++|+..+... .......++  +++.+|+.. .++.|+.++.++.+.    .+.. ...+ ......+ .
T Consensus       249 ~~g~l~a~d~~tG~~~W~~~-~~~~~~p~~--~~~~vyv~~-~~G~l~~~d~~tG~~----~W~~~~~~~~~~ssp~i-~  319 (377)
T TIGR03300       249 YQGRVAALDLRSGRVLWKRD-ASSYQGPAV--DDNRLYVTD-ADGVVVALDRRSGSE----LWKNDELKYRQLTAPAV-V  319 (377)
T ss_pred             cCCEEEEEECCCCcEEEeec-cCCccCceE--eCCEEEEEC-CCCeEEEEECCCCcE----EEccccccCCccccCEE-E
Confidence            46789999998888765443 222223333  456688876 456899999864321    1111 1111 1112233 3


Q ss_pred             CCCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEECC-CCcEEEEEECCCCCeeccceeeEEEC
Q 017371          275 DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQVD  353 (372)
Q Consensus       275 ~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~~  353 (372)
                      ++.+|+++..                                   +.++.+|. +|+++..+....+.   ..++....+
T Consensus       320 g~~l~~~~~~-----------------------------------G~l~~~d~~tG~~~~~~~~~~~~---~~~sp~~~~  361 (377)
T TIGR03300       320 GGYLVVGDFE-----------------------------------GYLHWLSREDGSFVARLKTDGSG---IASPPVVVG  361 (377)
T ss_pred             CCEEEEEeCC-----------------------------------CEEEEEECCCCCEEEEEEcCCCc---cccCCEEEC
Confidence            5678887754                                   68889986 59999888765432   234456677


Q ss_pred             CEEEEEeCCCCe
Q 017371          354 NHLYVISLTSNF  365 (372)
Q Consensus       354 g~L~igs~~~~~  365 (372)
                      ++||+++..+.-
T Consensus       362 ~~l~v~~~dG~l  373 (377)
T TIGR03300       362 DGLLVQTRDGDL  373 (377)
T ss_pred             CEEEEEeCCceE
Confidence            899999987543

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.36  E-value=0.00042  Score=67.28  Aligned_cols=202  Identities=16%  Similarity=0.179  Sum_probs=116.9

Q ss_pred             ccEEEcCCCc-E-EEEec--CCeEEEEe--CCceEEEEecCCCcccCeEEcCCCC-EEEEeCC---CcEEEEc-CCC-cE
Q 017371           82 EDASMDKNGV-I-YTATR--DGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA---NGLHKVS-EDG-VE  149 (372)
Q Consensus        82 ~~i~~d~~G~-l-~v~~~--~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~-l~v~~~~---~gv~~~~-~~g-~~  149 (372)
                      .+..+.++|. | |+...  ...|+.++  +|+.+.+....+... ..++.|||+ |+++...   ..++.++ .++ .+
T Consensus       202 ~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~-~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~  280 (430)
T PRK00178        202 LSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNG-APAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS  280 (430)
T ss_pred             eeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcC-CeEECCCCCEEEEEEccCCCceEEEEECCCCCeE
Confidence            4456778884 5 44433  34688888  566655544333444 678999996 4444322   2488888 555 54


Q ss_pred             EEeeecCCcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEec
Q 017371          150 NFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSR  228 (372)
Q Consensus       150 ~l~~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~  228 (372)
                      .+... .+    ......+.+||+ |+++..               ..+...||++|.++++.+.+...........++|
T Consensus       281 ~lt~~-~~----~~~~~~~spDg~~i~f~s~---------------~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Sp  340 (430)
T PRK00178        281 RVTNH-PA----IDTEPFWGKDGRTLYFTSD---------------RGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSA  340 (430)
T ss_pred             EcccC-CC----CcCCeEECCCCCEEEEEEC---------------CCCCceEEEEECCCCCEEEeecCCCCccceEECC
Confidence            44321 11    123457788885 666421               1134579999988888766543322233467999


Q ss_pred             CCCEEEEEeCCC--CeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhc
Q 017371          229 DEDYVVVCESWK--FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAY  306 (372)
Q Consensus       229 dg~~l~v~~~~~--~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~  306 (372)
                      ||+.++++....  ..|+.+++++.+   ...+...  +......+.+||+..+-...                      
T Consensus       341 dg~~i~~~~~~~~~~~l~~~dl~tg~---~~~lt~~--~~~~~p~~spdg~~i~~~~~----------------------  393 (430)
T PRK00178        341 DGKTLVMVHRQDGNFHVAAQDLQRGS---VRILTDT--SLDESPSVAPNGTMLIYATR----------------------  393 (430)
T ss_pred             CCCEEEEEEccCCceEEEEEECCCCC---EEEccCC--CCCCCceECCCCCEEEEEEe----------------------
Confidence            999998886533  358888886542   2222221  12234578889864443332                      


Q ss_pred             CccccccccCCCceEEEEECCCCcEEEEEECCCC
Q 017371          307 PKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTG  340 (372)
Q Consensus       307 p~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g  340 (372)
                               ......++.++.+|+..+.+..+.|
T Consensus       394 ---------~~g~~~l~~~~~~g~~~~~l~~~~g  418 (430)
T PRK00178        394 ---------QQGRGVLMLVSINGRVRLPLPTAQG  418 (430)
T ss_pred             ---------cCCceEEEEEECCCCceEECcCCCC
Confidence                     0113457777778877665555444

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.30  E-value=0.001  Score=64.91  Aligned_cols=134  Identities=13%  Similarity=0.095  Sum_probs=80.7

Q ss_pred             CeEEcCCCC-EEEE-eCC--CcEEEEc-CCC-cEEEeeecCCcccccccceEEccCCc-EEEEeCCCCCCCccccccccc
Q 017371          122 GLTSTKEGH-LIIC-DNA--NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILE  194 (372)
Q Consensus       122 gl~~d~dG~-l~v~-~~~--~gv~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~  194 (372)
                      ...+.|||+ |+++ ...  ..|+.++ ..| .+.+... .+    .....++.+||+ |+++...              
T Consensus       222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~-~g----~~~~~~wSPDG~~La~~~~~--------------  282 (448)
T PRK04792        222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF-PG----INGAPRFSPDGKKLALVLSK--------------  282 (448)
T ss_pred             CceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCC-CC----CcCCeeECCCCCEEEEEEeC--------------
Confidence            788999996 4333 222  2488888 555 4444321 22    123568889996 6664221              


Q ss_pred             ccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeC--CCCeEEEEEccCCCCcceeeeccCCCCCCceeEE
Q 017371          195 GKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES--WKFRCRKYWLKGERKGKLETFAENLPGAPDNINL  272 (372)
Q Consensus       195 ~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~--~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~  272 (372)
                       .+...||.+|.++++.+.+..........+|+|||++++++..  +...|+++++++.+.   +..... ........+
T Consensus       283 -~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~---~~Lt~~-g~~~~~~~~  357 (448)
T PRK04792        283 -DGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV---SRLTFE-GEQNLGGSI  357 (448)
T ss_pred             -CCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE---EEEecC-CCCCcCeeE
Confidence             1344699999988887776554334456789999998887654  235688888865432   222111 112234578


Q ss_pred             cCCCCEE
Q 017371          273 APDGTFW  279 (372)
Q Consensus       273 d~~G~lw  279 (372)
                      .+||+..
T Consensus       358 SpDG~~l  364 (448)
T PRK04792        358 TPDGRSM  364 (448)
T ss_pred             CCCCCEE
Confidence            8888643

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.29  E-value=0.0012  Score=64.05  Aligned_cols=156  Identities=18%  Similarity=0.172  Sum_probs=90.1

Q ss_pred             eEEEEe-CCc-eEEEEecCCCcccCeEEcCCCC-EEEEeC---CCcEEEEc-CCC-cEEEeeecCCcccccccceEEccC
Q 017371          100 WIKRLQ-DGT-WVNWKFIDSQTLVGLTSTKEGH-LIICDN---ANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASD  171 (372)
Q Consensus       100 ~i~~~~-~g~-~~~~~~~~~~p~~gl~~d~dG~-l~v~~~---~~gv~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~d~d  171 (372)
                      .|+.+| +|. .+.+... ..+....++.|||+ |.++..   ...++.++ ..| .+.+... .+    .....++.||
T Consensus       180 ~l~~~d~dg~~~~~lt~~-~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~-~~----~~~~~~~SPD  253 (429)
T PRK03629        180 ELRVSDYDGYNQFVVHRS-PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF-PR----HNGAPAFSPD  253 (429)
T ss_pred             eEEEEcCCCCCCEEeecC-CCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCC-CC----CcCCeEECCC
Confidence            455555 443 3333332 22333888999996 333221   13477777 556 4444321 21    2235789999


Q ss_pred             Cc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCC--CCeEEEEEc
Q 017371          172 GS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW--KFRCRKYWL  248 (372)
Q Consensus       172 G~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~--~~~i~~~~~  248 (372)
                      |+ |+++...               .+...||.+|.++++.+.+...........|+|||+.++++...  ...|+.+++
T Consensus       254 G~~La~~~~~---------------~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~  318 (429)
T PRK03629        254 GSKLAFALSK---------------TGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNI  318 (429)
T ss_pred             CCEEEEEEcC---------------CCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEEC
Confidence            95 6664221               12346999999888887765554445678899999988665432  347888888


Q ss_pred             cCCCCcceeeeccCCCCCCceeEEcCCCCEEE
Q 017371          249 KGERKGKLETFAENLPGAPDNINLAPDGTFWI  280 (372)
Q Consensus       249 ~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv  280 (372)
                      ++...   +.+.. ..+......+.+||+..+
T Consensus       319 ~~g~~---~~lt~-~~~~~~~~~~SpDG~~Ia  346 (429)
T PRK03629        319 NGGAP---QRITW-EGSQNQDADVSSDGKFMV  346 (429)
T ss_pred             CCCCe---EEeec-CCCCccCEEECCCCCEEE
Confidence            76432   22221 122234577888886443

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.29  E-value=0.00076  Score=59.55  Aligned_cols=183  Identities=14%  Similarity=0.125  Sum_probs=102.7

Q ss_pred             EEcCCCCEEEEeCCCcEEEEc-CCCcEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEE
Q 017371          124 TSTKEGHLIICDNANGLHKVS-EDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLL  202 (372)
Q Consensus       124 ~~d~dG~l~v~~~~~gv~~~~-~~g~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~  202 (372)
                      .+..+|.+|+++....|+.+| .+|........++. ...+   ..-.++.+|+..                  ..++|+
T Consensus        32 ~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~-~~~~---~~~~~~~v~v~~------------------~~~~l~   89 (238)
T PF13360_consen   32 AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP-ISGA---PVVDGGRVYVGT------------------SDGSLY   89 (238)
T ss_dssp             EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSC-GGSG---EEEETTEEEEEE------------------TTSEEE
T ss_pred             EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccc-ccce---eeeccccccccc------------------ceeeeE
Confidence            444578999997778899999 68833333332322 1111   234577888864                  345899


Q ss_pred             EEeCCCCeEEEEe-CCc----cCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCC-C--------Cc
Q 017371          203 KYDPSSNITTLVA-DGF----YFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPG-A--------PD  268 (372)
Q Consensus       203 ~~d~~t~~~~~~~-~~~----~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g-~--------p~  268 (372)
                      .+|..+|+..+.. ...    ..........+++.+|+... +..|+.+++++.+.-..... ...++ .        ..
T Consensus        90 ~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~l~~~d~~tG~~~w~~~~-~~~~~~~~~~~~~~~~~  167 (238)
T PF13360_consen   90 ALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS-SGKLVALDPKTGKLLWKYPV-GEPRGSSPISSFSDING  167 (238)
T ss_dssp             EEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET-CSEEEEEETTTTEEEEEEES-STT-SS--EEEETTEEE
T ss_pred             ecccCCcceeeeeccccccccccccccCceEecCEEEEEec-cCcEEEEecCCCcEEEEeec-CCCCCCcceeeeccccc
Confidence            9998889887753 211    11112223334666877775 56799999765422111111 11110 0        01


Q ss_pred             eeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEEC-CCCcEEEEEECCCCCeeccce
Q 017371          269 NINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVT  347 (372)
Q Consensus       269 ~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~-~~g~~~~~~~~~~g~~~~~~t  347 (372)
                      ...++ +|.+|++...                                   +.++++| .+|+.+.  ..+.+.   ...
T Consensus       168 ~~~~~-~~~v~~~~~~-----------------------------------g~~~~~d~~tg~~~w--~~~~~~---~~~  206 (238)
T PF13360_consen  168 SPVIS-DGRVYVSSGD-----------------------------------GRVVAVDLATGEKLW--SKPISG---IYS  206 (238)
T ss_dssp             EEECC-TTEEEEECCT-----------------------------------SSEEEEETTTTEEEE--EECSS----ECE
T ss_pred             ceEEE-CCEEEEEcCC-----------------------------------CeEEEEECCCCCEEE--EecCCC---ccC
Confidence            22223 5578887765                                   2356666 4566553  222221   122


Q ss_pred             eeEEECCEEEEEeCCCCeEEEEeCC
Q 017371          348 SGLQVDNHLYVISLTSNFIGKVQLS  372 (372)
Q Consensus       348 ~~~~~~g~L~igs~~~~~i~~~~~~  372 (372)
                      .....++.||+++ ....|..+++.
T Consensus       207 ~~~~~~~~l~~~~-~~~~l~~~d~~  230 (238)
T PF13360_consen  207 LPSVDGGTLYVTS-SDGRLYALDLK  230 (238)
T ss_dssp             CEECCCTEEEEEE-TTTEEEEEETT
T ss_pred             CceeeCCEEEEEe-CCCEEEEEECC
Confidence            2556789999999 78999888863

...

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.28  E-value=0.001  Score=64.21  Aligned_cols=198  Identities=12%  Similarity=0.082  Sum_probs=120.1

Q ss_pred             EEEcCCCc--EEEEe-c--CCeEEEEe--CCceEEEEecCCCcccCeEEcCCCC-EEEEeCC---CcEEEEc-CCC-cEE
Q 017371           84 ASMDKNGV--IYTAT-R--DGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA---NGLHKVS-EDG-VEN  150 (372)
Q Consensus        84 i~~d~~G~--l~v~~-~--~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~-l~v~~~~---~gv~~~~-~~g-~~~  150 (372)
                      -.+.++|+  +|+.+ .  +..|+.++  +|+.+.+....+... ...+.|||+ |.++...   ..++.++ ..| .+.
T Consensus       193 p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~-~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~  271 (419)
T PRK04043        193 PKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLV-VSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQ  271 (419)
T ss_pred             EEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEE-eeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEE
Confidence            44667874  66554 2  45788888  677766655434334 567889995 5444322   3488888 555 555


Q ss_pred             EeeecCCcccccccceEEccCC-cEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecC
Q 017371          151 FLSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRD  229 (372)
Q Consensus       151 l~~~~~~~~~~~~~~l~~d~dG-~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~d  229 (372)
                      +... ++    ....-.+.+|| +|+|+...               .....||++|.++++.+.+..... .+ ..++||
T Consensus       272 LT~~-~~----~d~~p~~SPDG~~I~F~Sdr---------------~g~~~Iy~~dl~~g~~~rlt~~g~-~~-~~~SPD  329 (419)
T PRK04043        272 ITNY-PG----IDVNGNFVEDDKRIVFVSDR---------------LGYPNIFMKKLNSGSVEQVVFHGK-NN-SSVSTY  329 (419)
T ss_pred             cccC-CC----ccCccEECCCCCEEEEEECC---------------CCCceEEEEECCCCCeEeCccCCC-cC-ceECCC
Confidence            4322 21    01123688999 58776431               134579999999888866543211 12 489999


Q ss_pred             CCEEEEEeCCC--------CeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCC-EEEEEecCchhHHHHhhcchhHH
Q 017371          230 EDYVVVCESWK--------FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIK  300 (372)
Q Consensus       230 g~~l~v~~~~~--------~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~r  300 (372)
                      |+.+.++....        ..|+.+++++..   ...+...  +.-....+.+||. |+++...                
T Consensus       330 G~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~---~~~LT~~--~~~~~p~~SPDG~~I~f~~~~----------------  388 (419)
T PRK04043        330 KNYIVYSSRETNNEFGKNTFNLYLISTNSDY---IRRLTAN--GVNQFPRFSSDGGSIMFIKYL----------------  388 (419)
T ss_pred             CCEEEEEEcCCCcccCCCCcEEEEEECCCCC---eEECCCC--CCcCCeEECCCCCEEEEEEcc----------------
Confidence            99888776533        478888887643   2233221  2223467889996 4444332                


Q ss_pred             HHHHhcCccccccccCCCceEEEEECCCCcEEEEEECCCCC
Q 017371          301 HVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQ  341 (372)
Q Consensus       301 ~~~~~~p~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~  341 (372)
                                      .....+..++-+|+....+....|.
T Consensus       389 ----------------~~~~~L~~~~l~g~~~~~l~~~~g~  413 (419)
T PRK04043        389 ----------------GNQSALGIIRLNYNKSFLFPLKVGK  413 (419)
T ss_pred             ----------------CCcEEEEEEecCCCeeEEeecCCCc
Confidence                            1134688888899887777665554

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.28  E-value=0.0007  Score=65.86  Aligned_cols=171  Identities=12%  Similarity=0.089  Sum_probs=103.2

Q ss_pred             ccEEEcCCCc-EEEEe---cCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCC-EEEEeCC---CcEEEEc-CCC-cE
Q 017371           82 EDASMDKNGV-IYTAT---RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA---NGLHKVS-EDG-VE  149 (372)
Q Consensus        82 ~~i~~d~~G~-l~v~~---~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~-l~v~~~~---~gv~~~~-~~g-~~  149 (372)
                      .+..+.+||. |++.+   .+..|+.++  +|+.+.+....+... ..++.|||+ |+++...   ..|+.++ .++ .+
T Consensus       205 ~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~-~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~  283 (435)
T PRK05137        205 LTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTF-APRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT  283 (435)
T ss_pred             EeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCccc-CcEECCCCCEEEEEEecCCCceEEEEECCCCceE
Confidence            3456778884 44433   346789888  566655544334445 788999996 4444322   2488888 555 54


Q ss_pred             EEeeecCCcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEec
Q 017371          150 NFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSR  228 (372)
Q Consensus       150 ~l~~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~  228 (372)
                      .+... .+    ......+.+||+ |+++..               ..+...||.+|.++++.+.+..+........|+|
T Consensus       284 ~Lt~~-~~----~~~~~~~spDG~~i~f~s~---------------~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~Sp  343 (435)
T PRK05137        284 RLTDS-PA----IDTSPSYSPDGSQIVFESD---------------RSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSP  343 (435)
T ss_pred             EccCC-CC----ccCceeEcCCCCEEEEEEC---------------CCCCCeEEEEECCCCCeEEeecCCCcccCeEECC
Confidence            44221 11    223467889985 555421               1134579999988777776654332334578999


Q ss_pred             CCCEEEEEeCCC--CeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCE
Q 017371          229 DEDYVVVCESWK--FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTF  278 (372)
Q Consensus       229 dg~~l~v~~~~~--~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~l  278 (372)
                      ||+.++++....  .+|+.+++++..   ...+...  .......+.+||+.
T Consensus       344 dG~~ia~~~~~~~~~~i~~~d~~~~~---~~~lt~~--~~~~~p~~spDG~~  390 (435)
T PRK05137        344 RGDLIAFTKQGGGQFSIGVMKPDGSG---ERILTSG--FLVEGPTWAPNGRV  390 (435)
T ss_pred             CCCEEEEEEcCCCceEEEEEECCCCc---eEeccCC--CCCCCCeECCCCCE
Confidence            999998876432  478888876542   2222211  12456788999964

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.25  E-value=0.0011  Score=64.04  Aligned_cols=173  Identities=13%  Similarity=0.138  Sum_probs=101.7

Q ss_pred             EEEcCCCc-EEEEe-c--CCeEEEEe--CCceEEEEecCCCcccCeEEcCCCC-EEEEeCC---CcEEEEc-CCC-cEEE
Q 017371           84 ASMDKNGV-IYTAT-R--DGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA---NGLHKVS-EDG-VENF  151 (372)
Q Consensus        84 i~~d~~G~-l~v~~-~--~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~-l~v~~~~---~gv~~~~-~~g-~~~l  151 (372)
                      ..+.++|+ |+++. .  ...|+.++  +|+.+.+....+... .+++.+||+ |+++...   ..++.++ .++ .+.+
T Consensus       195 p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~-~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l  273 (417)
T TIGR02800       195 PAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNG-APAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRL  273 (417)
T ss_pred             ccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCcc-ceEECCCCCEEEEEECCCCCccEEEEECCCCCEEEC
Confidence            45667774 44444 2  24688888  565555544444455 788999996 6554332   2488888 555 4443


Q ss_pred             eeecCCcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCC
Q 017371          152 LSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDE  230 (372)
Q Consensus       152 ~~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg  230 (372)
                      ... .+    ......+.+||+ |+++...               .....||.+|.++++.+.+...........+++||
T Consensus       274 ~~~-~~----~~~~~~~s~dg~~l~~~s~~---------------~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg  333 (417)
T TIGR02800       274 TNG-PG----IDTEPSWSPDGKSIAFTSDR---------------GGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDG  333 (417)
T ss_pred             CCC-CC----CCCCEEECCCCCEEEEEECC---------------CCCceEEEEECCCCCEEEeecCCCCccCeEECCCC
Confidence            221 11    112446778885 5443211               13347999998888776665444445578899999


Q ss_pred             CEEEEEeCCC--CeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCC-EEEEE
Q 017371          231 DYVVVCESWK--FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAI  282 (372)
Q Consensus       231 ~~l~v~~~~~--~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwva~  282 (372)
                      +.++++....  .+|+.+++++.   ....+..  ........+.++|+ |+++.
T Consensus       334 ~~i~~~~~~~~~~~i~~~d~~~~---~~~~l~~--~~~~~~p~~spdg~~l~~~~  383 (417)
T TIGR02800       334 DLIAFVHREGGGFNIAVMDLDGG---GERVLTD--TGLDESPSFAPNGRMILYAT  383 (417)
T ss_pred             CEEEEEEccCCceEEEEEeCCCC---CeEEccC--CCCCCCceECCCCCEEEEEE
Confidence            9888876543  37888887653   2222221  11234457788886 44433

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.25  E-value=0.0015  Score=63.35  Aligned_cols=154  Identities=11%  Similarity=0.057  Sum_probs=86.7

Q ss_pred             eEEEEe-CCc-eEEEEecCCCcccCeEEcCCCC-EEEEeCCC---cEEEEc-CCC-cEEEeeecCCcccccccceEEccC
Q 017371          100 WIKRLQ-DGT-WVNWKFIDSQTLVGLTSTKEGH-LIICDNAN---GLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASD  171 (372)
Q Consensus       100 ~i~~~~-~g~-~~~~~~~~~~p~~gl~~d~dG~-l~v~~~~~---gv~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~d~d  171 (372)
                      +|+.+| +|. .+.+........ ..++.|||+ |+++....   .++.++ .+| ...+.. .++    .....++.+|
T Consensus       177 ~L~~~D~dG~~~~~l~~~~~~v~-~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~-~~g----~~~~~~~SPD  250 (427)
T PRK02889        177 QLQISDADGQNAQSALSSPEPII-SPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVAN-FKG----SNSAPAWSPD  250 (427)
T ss_pred             EEEEECCCCCCceEeccCCCCcc-cceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeec-CCC----CccceEECCC
Confidence            456666 443 233322222334 788999996 44443222   388888 566 444432 122    2236788999


Q ss_pred             Cc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeC--CCCeEEEEEc
Q 017371          172 GS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES--WKFRCRKYWL  248 (372)
Q Consensus       172 G~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~--~~~~i~~~~~  248 (372)
                      |+ |+++-.               ......||.+|.++++.+.+...........|+|||++++++..  +...|+.+++
T Consensus       251 G~~la~~~~---------------~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~  315 (427)
T PRK02889        251 GRTLAVALS---------------RDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPA  315 (427)
T ss_pred             CCEEEEEEc---------------cCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEEC
Confidence            94 665422               11345799999887776655433222345679999998887643  3346777776


Q ss_pred             cCCCCcceeeeccCCCCCCceeEEcCCCCE
Q 017371          249 KGERKGKLETFAENLPGAPDNINLAPDGTF  278 (372)
Q Consensus       249 ~g~~~~~~~~~~~~~~g~p~~i~~d~~G~l  278 (372)
                      ++.+.   +... ...+......+.+||+.
T Consensus       316 ~~g~~---~~lt-~~g~~~~~~~~SpDG~~  341 (427)
T PRK02889        316 SGGAA---QRVT-FTGSYNTSPRISPDGKL  341 (427)
T ss_pred             CCCce---EEEe-cCCCCcCceEECCCCCE
Confidence            65322   1211 11122335678888864

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.21  E-value=7.1e-05  Score=64.03  Aligned_cols=111  Identities=15%  Similarity=0.156  Sum_probs=75.8

Q ss_pred             EEcCCCcEEEEec----------CCeEEEEe-CCceEEEEecCCCcccCeEEcCCC-CEEEEeCC-CcE--EEEc-CCC-
Q 017371           85 SMDKNGVIYTATR----------DGWIKRLQ-DGTWVNWKFIDSQTLVGLTSTKEG-HLIICDNA-NGL--HKVS-EDG-  147 (372)
Q Consensus        85 ~~d~~G~l~v~~~----------~g~i~~~~-~g~~~~~~~~~~~p~~gl~~d~dG-~l~v~~~~-~gv--~~~~-~~g-  147 (372)
                      -+||+|+.|.|+.          .|.++++. +++++.+-..-+.++ ||++|.|. .+|+.|+. ..|  +.+| +.| 
T Consensus       115 kvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsN-gl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~  193 (310)
T KOG4499|consen  115 KVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISN-GLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGD  193 (310)
T ss_pred             ccCCCCceeeeeeccccccccccccEEEEeccCCCceeeehhccCCc-cccccccCcEEEEEccCceEEeeeecCCCccc
Confidence            4778898888861          24555555 667776666667888 99999766 57888765 356  4444 555 


Q ss_pred             c---EEEee-e-cCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEE
Q 017371          148 V---ENFLS-Y-VNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL  213 (372)
Q Consensus       148 ~---~~l~~-~-~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~  213 (372)
                      +   ..+.+ . ........|.++++|.+|+|||+..                 ..++|+++||.||+.-.
T Consensus       194 ~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~-----------------ng~~V~~~dp~tGK~L~  247 (310)
T KOG4499|consen  194 LSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATF-----------------NGGTVQKVDPTTGKILL  247 (310)
T ss_pred             ccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEe-----------------cCcEEEEECCCCCcEEE
Confidence            2   22222 1 1111235789999999999999865                 35789999999998643

>PRK01742 tolB translocation protein TolB; Provisional

Probab=98.21  E-value=0.00099  Score=64.69  Aligned_cols=173  Identities=14%  Similarity=0.149  Sum_probs=101.2

Q ss_pred             CccEEEcCCCc-EEEEe-c--CCeEEEEe--CCceEEEEecCCCcccCeEEcCCCC-EEEEeCCC---cEEEEc-CCC-c
Q 017371           81 PEDASMDKNGV-IYTAT-R--DGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNAN---GLHKVS-EDG-V  148 (372)
Q Consensus        81 p~~i~~d~~G~-l~v~~-~--~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~-l~v~~~~~---gv~~~~-~~g-~  148 (372)
                      ..+..+.++|. |.++. .  +..|+.++  +|+.+.+....+... .+++.|||+ |+++....   .|+.++ ..+ .
T Consensus       206 v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~-~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~  284 (429)
T PRK01742        206 LMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNG-APAFSPDGSRLAFASSKDGVLNIYVMGANGGTP  284 (429)
T ss_pred             cccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccC-ceeECCCCCEEEEEEecCCcEEEEEEECCCCCe
Confidence            34567888884 44433 2  34688888  565555544334445 788999997 44443222   367777 445 4


Q ss_pred             EEEeeecCCcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEe
Q 017371          149 ENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALS  227 (372)
Q Consensus       149 ~~l~~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~  227 (372)
                      +.+... .    .......+.+||+ |+++..               ..+.-.||.++..++..+.+ ....  ....++
T Consensus       285 ~~lt~~-~----~~~~~~~wSpDG~~i~f~s~---------------~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~S  341 (429)
T PRK01742        285 SQLTSG-A----GNNTEPSWSPDGQSILFTSD---------------RSGSPQVYRMSASGGGASLV-GGRG--YSAQIS  341 (429)
T ss_pred             EeeccC-C----CCcCCEEECCCCCEEEEEEC---------------CCCCceEEEEECCCCCeEEe-cCCC--CCccCC
Confidence            444221 1    1244678899996 565421               11345799998876665554 2211  346789


Q ss_pred             cCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 017371          228 RDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       228 ~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~  284 (372)
                      |||+.++++..  +.++++++.+.+   ........  ......++++|++.+....
T Consensus       342 pDG~~ia~~~~--~~i~~~Dl~~g~---~~~lt~~~--~~~~~~~sPdG~~i~~~s~  391 (429)
T PRK01742        342 ADGKTLVMING--DNVVKQDLTSGS---TEVLSSTF--LDESPSISPNGIMIIYSST  391 (429)
T ss_pred             CCCCEEEEEcC--CCEEEEECCCCC---eEEecCCC--CCCCceECCCCCEEEEEEc
Confidence            99998887754  568888876532   22222111  1245678999986665543

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=98.20  E-value=0.0008  Score=63.48  Aligned_cols=175  Identities=11%  Similarity=0.117  Sum_probs=98.4

Q ss_pred             CccEEEcCCCcEEEEecCCeEEEEe-CC-ceE-EEEecCCCcccCeEEcCCCCEEEEeCCCcEEEEcCCCcEEEee-ecC
Q 017371           81 PEDASMDKNGVIYTATRDGWIKRLQ-DG-TWV-NWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDGVENFLS-YVN  156 (372)
Q Consensus        81 p~~i~~d~~G~l~v~~~~g~i~~~~-~g-~~~-~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~~~g~~~l~~-~~~  156 (372)
                      .-++.+.++|.+.+|+.+|.|+.|+ ++ ++. ....-.+... +|.+-.+|.|.-+..++.+..+|. ..+.+.. +.+
T Consensus       249 Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~-~L~~lr~GtllSGgKDRki~~Wd~-~y~k~r~~elP  326 (626)
T KOG2106|consen  249 VLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVF-SLCMLRDGTLLSGGKDRKIILWDD-NYRKLRETELP  326 (626)
T ss_pred             EEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceE-EEEEecCccEeecCccceEEeccc-cccccccccCc
Confidence            4468888999999999999999999 33 222 2223335566 888889999887655566777772 1222221 112


Q ss_pred             CcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEE
Q 017371          157 GSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVC  236 (372)
Q Consensus       157 ~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~  236 (372)
                       ..+..+..++....+ |||..++                  +.|+.=+..++-...+......--|++.+|+.+ +|++
T Consensus       327 -e~~G~iRtv~e~~~d-i~vGTtr------------------N~iL~Gt~~~~f~~~v~gh~delwgla~hps~~-q~~T  385 (626)
T KOG2106|consen  327 -EQFGPIRTVAEGKGD-ILVGTTR------------------NFILQGTLENGFTLTVQGHGDELWGLATHPSKN-QLLT  385 (626)
T ss_pred             -hhcCCeeEEecCCCc-EEEeecc------------------ceEEEeeecCCceEEEEecccceeeEEcCCChh-heee
Confidence             123456667665434 9997542                  345544444333222222223456899999887 5555


Q ss_pred             eCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 017371          237 ESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       237 ~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~  284 (372)
                      .. .++-.+.|- ..+..-...+.+  +  .....+++.|.+-++...
T Consensus       386 ~g-qdk~v~lW~-~~k~~wt~~~~d--~--~~~~~fhpsg~va~Gt~~  427 (626)
T KOG2106|consen  386 CG-QDKHVRLWN-DHKLEWTKIIED--P--AECADFHPSGVVAVGTAT  427 (626)
T ss_pred             cc-CcceEEEcc-CCceeEEEEecC--c--eeEeeccCcceEEEeecc
Confidence            43 344555554 222222222221  1  234556677755555544

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.18  E-value=0.0011  Score=59.01  Aligned_cols=191  Identities=15%  Similarity=0.146  Sum_probs=113.3

Q ss_pred             CCCCCCccEEEcCCC-cEEEEe-cCCeEEEEe-CCceEEEEe--cCCCcccCeEEcCCCCEEEEeCC-CcEEE--EcCCC
Q 017371           76 GSVNHPEDASMDKNG-VIYTAT-RDGWIKRLQ-DGTWVNWKF--IDSQTLVGLTSTKEGHLIICDNA-NGLHK--VSEDG  147 (372)
Q Consensus        76 g~~~~p~~i~~d~~G-~l~v~~-~~g~i~~~~-~g~~~~~~~--~~~~p~~gl~~d~dG~l~v~~~~-~gv~~--~~~~g  147 (372)
                      |....-.++.++++- .||... ..-.|..++ +|.+-...+  ...+|- +|..-.+|...+++.. +.++.  ++.++
T Consensus        83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE-~Ieyig~n~fvi~dER~~~l~~~~vd~~t  161 (316)
T COG3204          83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPE-TIEYIGGNQFVIVDERDRALYLFTVDADT  161 (316)
T ss_pred             cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChh-HeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence            334456778899765 566554 556788888 776543322  234566 7777766666566554 33444  44443


Q ss_pred             -cEEEee---ec--CCcccccccceEEccC-CcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCC---
Q 017371          148 -VENFLS---YV--NGSKLRFANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG---  217 (372)
Q Consensus       148 -~~~l~~---~~--~~~~~~~~~~l~~d~d-G~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~---  217 (372)
                       +.....   ..  ...+.....+++.|+. +++||+-..                .--+||.++........-...   
T Consensus       162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr----------------~P~~I~~~~~~~~~l~~~~~~~~~  225 (316)
T COG3204         162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKER----------------NPIGIFEVTQSPSSLSVHASLDPT  225 (316)
T ss_pred             cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEcc----------------CCcEEEEEecCCcccccccccCcc
Confidence             222221   11  1122446679999985 478886331                223577776432222211100   


Q ss_pred             ------ccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCccee------eeccCCCCCCceeEEcCCCCEEEEEec
Q 017371          218 ------FYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLE------TFAENLPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       218 ------~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~------~~~~~~~g~p~~i~~d~~G~lwva~~~  284 (372)
                            +..-.|+.+++..+.|+|.......+..++.+|...+...      ......| .+.|++.|.+|+|||.+-.
T Consensus       226 ~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dip-qaEGiamDd~g~lYIvSEP  303 (316)
T COG3204         226 ADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIP-QAEGIAMDDDGNLYIVSEP  303 (316)
T ss_pred             cccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCC-CcceeEECCCCCEEEEecC
Confidence                  1234588899888889998888888999998876322211      1111122 4789999999999999865

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=98.18  E-value=0.0019  Score=61.33  Aligned_cols=183  Identities=19%  Similarity=0.227  Sum_probs=116.4

Q ss_pred             CCCCCCCccEEEcCCC-cEEEEecCCeEEEEe--CCceEEEE--ecCCCcccCeEEcCCCCEEEEeCCCcEEEEc-C-CC
Q 017371           75 EGSVNHPEDASMDKNG-VIYTATRDGWIKRLQ--DGTWVNWK--FIDSQTLVGLTSTKEGHLIICDNANGLHKVS-E-DG  147 (372)
Q Consensus        75 ~g~~~~p~~i~~d~~G-~l~v~~~~g~i~~~~--~g~~~~~~--~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~-~-~g  147 (372)
                      .|.-..-..+.+.++| +||.++.+|.|..|+  .|.-..+.  .-.+... +++....+.++.+..+.-|.+++ . +|
T Consensus       317 ~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~-~~~~~~~~~~~t~g~Dd~l~~~~~~~~~  395 (603)
T KOG0318|consen  317 SGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIK-GMAASESGELFTIGWDDTLRVISLKDNG  395 (603)
T ss_pred             cccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEE-EEeecCCCcEEEEecCCeEEEEecccCc
Confidence            3444456678888877 788999999999999  34322221  1223445 88888778999888777788887 3 33


Q ss_pred             cEE-EeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEE
Q 017371          148 VEN-FLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVAL  226 (372)
Q Consensus       148 ~~~-l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~  226 (372)
                      ... ......    ..|.++++.++|.+.+..                  ....|..+.-. +....+ .-...+.++|+
T Consensus       396 ~t~~~~~~lg----~QP~~lav~~d~~~avv~------------------~~~~iv~l~~~-~~~~~~-~~~y~~s~vAv  451 (603)
T KOG0318|consen  396 YTKSEVVKLG----SQPKGLAVLSDGGTAVVA------------------CISDIVLLQDQ-TKVSSI-PIGYESSAVAV  451 (603)
T ss_pred             ccccceeecC----CCceeEEEcCCCCEEEEE------------------ecCcEEEEecC-Ccceee-ccccccceEEE
Confidence            211 111112    356699999987543321                  22335555433 222222 23456789999


Q ss_pred             ecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 017371          227 SRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       227 ~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~  284 (372)
                      +||++.+.|... +..|+.|.+.|..+.+.... ....+-+..++..+||.+.+++-.
T Consensus       452 ~~~~~~vaVGG~-Dgkvhvysl~g~~l~ee~~~-~~h~a~iT~vaySpd~~yla~~Da  507 (603)
T KOG0318|consen  452 SPDGSEVAVGGQ-DGKVHVYSLSGDELKEEAKL-LEHRAAITDVAYSPDGAYLAAGDA  507 (603)
T ss_pred             cCCCCEEEEecc-cceEEEEEecCCcccceeee-ecccCCceEEEECCCCcEEEEecc
Confidence            999997777654 56799999988654332222 234556888999999998888766

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=98.17  E-value=5.4e-05  Score=70.75  Aligned_cols=157  Identities=17%  Similarity=0.257  Sum_probs=92.3

Q ss_pred             CCcccCeEEcCCCCEEEEeCCCcEEEEcCCC-c-EEEeee--cCCcccccccceEEccC----CcEEEEeCCCCCCCccc
Q 017371          117 SQTLVGLTSTKEGHLIICDNANGLHKVSEDG-V-ENFLSY--VNGSKLRFANDVVEASD----GSLYFTVSSSKYLPHEY  188 (372)
Q Consensus       117 ~~p~~gl~~d~dG~l~v~~~~~gv~~~~~~g-~-~~l~~~--~~~~~~~~~~~l~~d~d----G~i~vtd~~~~~~~~~~  188 (372)
                      ..|. +|++.|||++||++....|.+++.+| . ..+...  ..........+|+++++    +.||+.-+...      
T Consensus         2 ~~P~-~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~------   74 (331)
T PF07995_consen    2 NNPR-SMAFLPDGRLLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNAD------   74 (331)
T ss_dssp             SSEE-EEEEETTSCEEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-------
T ss_pred             CCce-EEEEeCCCcEEEEeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEccc------
Confidence            4688 99999999999998755577777677 4 443332  22223346678999984    89999744200      


Q ss_pred             ccccccccCCCeEEEEeCCCC-----eEEEEeC-------CccCcceEEEecCCCEEEEEeC-------------CCCeE
Q 017371          189 CLDILEGKPHGQLLKYDPSSN-----ITTLVAD-------GFYFANGVALSRDEDYVVVCES-------------WKFRC  243 (372)
Q Consensus       189 ~~~~~~~~~~g~v~~~d~~t~-----~~~~~~~-------~~~~~~gi~~~~dg~~l~v~~~-------------~~~~i  243 (372)
                         ........+|.|+..+.+     ..+.+..       ..+...+++|.||| .|||+--             ....|
T Consensus        75 ---~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G~~~~~~~~~~~~~~~G~i  150 (331)
T PF07995_consen   75 ---EDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVGDGGNDDNAQDPNSLRGKI  150 (331)
T ss_dssp             ---TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB-TTTGGGGCSTTSSTTEE
T ss_pred             ---CCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeCCCCCcccccccccccceE
Confidence               000112246766654322     2223322       23344579999999 6998742             23479


Q ss_pred             EEEEccCCC----------CcceeeeccCCCCCCceeEEcCC-CCEEEEEecC
Q 017371          244 RKYWLKGER----------KGKLETFAENLPGAPDNINLAPD-GTFWIAIIKL  285 (372)
Q Consensus       244 ~~~~~~g~~----------~~~~~~~~~~~~g~p~~i~~d~~-G~lwva~~~~  285 (372)
                      .|++.+|.-          ....+++...+- .|-++++|+. |+||+++.+.
T Consensus       151 lri~~dG~~p~dnP~~~~~~~~~~i~A~GlR-N~~~~~~d~~tg~l~~~d~G~  202 (331)
T PF07995_consen  151 LRIDPDGSIPADNPFVGDDGADSEIYAYGLR-NPFGLAFDPNTGRLWAADNGP  202 (331)
T ss_dssp             EEEETTSSB-TTSTTTTSTTSTTTEEEE--S-EEEEEEEETTTTEEEEEEE-S
T ss_pred             EEecccCcCCCCCccccCCCceEEEEEeCCC-ccccEEEECCCCcEEEEccCC
Confidence            999987641          012234443222 3778999999 9999999764

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.14  E-value=0.0018  Score=62.89  Aligned_cols=134  Identities=16%  Similarity=0.153  Sum_probs=81.3

Q ss_pred             CeEEcCCCC-EEEEeCC---CcEEEEc-CCC-cEEEeeecCCcccccccceEEccCCc-EEEEeCCCCCCCccccccccc
Q 017371          122 GLTSTKEGH-LIICDNA---NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILE  194 (372)
Q Consensus       122 gl~~d~dG~-l~v~~~~---~gv~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~  194 (372)
                      +.++.|||+ |+++...   ..|+.++ ..| .+.+.. .++    ......+.+||+ |+++.+.              
T Consensus       208 ~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~-~~g----~~~~~~~SpDG~~l~~~~s~--------------  268 (433)
T PRK04922        208 SPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVAS-FRG----INGAPSFSPDGRRLALTLSR--------------  268 (433)
T ss_pred             cccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEecc-CCC----CccCceECCCCCEEEEEEeC--------------
Confidence            788899996 4444322   2388888 556 444432 122    123568899995 6664321              


Q ss_pred             ccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCC--CCeEEEEEccCCCCcceeeeccCCCCCCceeEE
Q 017371          195 GKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW--KFRCRKYWLKGERKGKLETFAENLPGAPDNINL  272 (372)
Q Consensus       195 ~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~--~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~  272 (372)
                       .+...||.+|.++++.+.+..........+|+|||++++++...  ...|+.+++++.+.   +.+. ..........+
T Consensus       269 -~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~---~~lt-~~g~~~~~~~~  343 (433)
T PRK04922        269 -DGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA---ERLT-FQGNYNARASV  343 (433)
T ss_pred             -CCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe---EEee-cCCCCccCEEE
Confidence             13457999999888877655443333467899999988876532  34688888765432   2222 11123445788


Q ss_pred             cCCCCEE
Q 017371          273 APDGTFW  279 (372)
Q Consensus       273 d~~G~lw  279 (372)
                      .+||+..
T Consensus       344 SpDG~~I  350 (433)
T PRK04922        344 SPDGKKI  350 (433)
T ss_pred             CCCCCEE
Confidence            8898643

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=98.13  E-value=0.0008  Score=59.58  Aligned_cols=155  Identities=16%  Similarity=0.159  Sum_probs=104.6

Q ss_pred             cccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEE--EeCCccCcceEEEecCCCEEEEEe
Q 017371          160 LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL--VADGFYFANGVALSRDEDYVVVCE  237 (372)
Q Consensus       160 ~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~--~~~~~~~~~gi~~~~dg~~l~v~~  237 (372)
                      ..|..++.+..+|.+|-+...  |             +..+|.++|+++|++..  -...-.|..|+++..  +.+|...
T Consensus        44 ~aFTQGL~~~~~g~LyESTG~--y-------------G~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~--d~l~qLT  106 (264)
T PF05096_consen   44 TAFTQGLEFLDDGTLYESTGL--Y-------------GQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG--DKLYQLT  106 (264)
T ss_dssp             T-EEEEEEEEETTEEEEEECS--T-------------TEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET--TEEEEEE
T ss_pred             cccCccEEecCCCEEEEeCCC--C-------------CcEEEEEEECCCCcEEEEEECCccccceeEEEEC--CEEEEEE
Confidence            357789999889999998642  1             34579999999998654  234556788999884  4699999


Q ss_pred             CCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCC
Q 017371          238 SWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLG  317 (372)
Q Consensus       238 ~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~  317 (372)
                      ...+..++|+.++  ......|.  .++--=|++.|. ..||+++.+                                 
T Consensus       107 Wk~~~~f~yd~~t--l~~~~~~~--y~~EGWGLt~dg-~~Li~SDGS---------------------------------  148 (264)
T PF05096_consen  107 WKEGTGFVYDPNT--LKKIGTFP--YPGEGWGLTSDG-KRLIMSDGS---------------------------------  148 (264)
T ss_dssp             SSSSEEEEEETTT--TEEEEEEE---SSS--EEEECS-SCEEEE-SS---------------------------------
T ss_pred             ecCCeEEEEcccc--ceEEEEEe--cCCcceEEEcCC-CEEEEECCc---------------------------------
Confidence            9899999999864  23333342  122234677553 379999876                                 


Q ss_pred             CceEEEEECCC-CcEEEEEECC-CCCeeccceeeEEECCEEEEEeCCCCeEEEEeC
Q 017371          318 GGAHLIHVAED-GTIIRNLVDP-TGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL  371 (372)
Q Consensus       318 ~~~~v~~~~~~-g~~~~~~~~~-~g~~~~~~t~~~~~~g~L~igs~~~~~i~~~~~  371 (372)
                        ..+..+||+ -+....+... +|............+|.||..-+..+.|.+|+.
T Consensus       149 --~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp  202 (264)
T PF05096_consen  149 --SRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDRIVRIDP  202 (264)
T ss_dssp             --SEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSSEEEEEET
T ss_pred             --cceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeC
Confidence              478889975 4555554432 466667777888889999999999999999985

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.13  E-value=0.0038  Score=60.24  Aligned_cols=155  Identities=14%  Similarity=0.028  Sum_probs=91.1

Q ss_pred             eEEEEe-CCc-eEEEEecCCCcccCeEEcCCCC--EEEEeCC---CcEEEEc-CCC-cEEEeeecCCcccccccceEEcc
Q 017371          100 WIKRLQ-DGT-WVNWKFIDSQTLVGLTSTKEGH--LIICDNA---NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEAS  170 (372)
Q Consensus       100 ~i~~~~-~g~-~~~~~~~~~~p~~gl~~d~dG~--l~v~~~~---~gv~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~d~  170 (372)
                      +|+..| +|. .+.+... + +.....+.|||+  +|++...   ..|+.++ .+| .+.+.. .++.    .....+.+
T Consensus       170 ~l~~~d~dg~~~~~~~~~-~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~----~~~~~~SP  242 (419)
T PRK04043        170 NIVLADYTLTYQKVIVKG-G-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGM----LVVSDVSK  242 (419)
T ss_pred             eEEEECCCCCceeEEccC-C-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCc----EEeeEECC
Confidence            566666 554 3333333 3 433778889996  5654332   2488888 667 555543 2221    11245788


Q ss_pred             CC-cEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCC--CCeEEEEE
Q 017371          171 DG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW--KFRCRKYW  247 (372)
Q Consensus       171 dG-~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~--~~~i~~~~  247 (372)
                      || +|.++...               .++..||.+|.++++.+.+...-..-....|+|||+.++++...  ...|++++
T Consensus       243 DG~~la~~~~~---------------~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~d  307 (419)
T PRK04043        243 DGSKLLLTMAP---------------KGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKK  307 (419)
T ss_pred             CCCEEEEEEcc---------------CCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEE
Confidence            98 57665331               24568999998888877654332222345799999988887643  24799999


Q ss_pred             ccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEE
Q 017371          248 LKGERKGKLETFAENLPGAPDNINLAPDGTFWIAI  282 (372)
Q Consensus       248 ~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~  282 (372)
                      +++.+..   .....  +. .+..+++||...+-.
T Consensus       308 l~~g~~~---rlt~~--g~-~~~~~SPDG~~Ia~~  336 (419)
T PRK04043        308 LNSGSVE---QVVFH--GK-NNSSVSTYKNYIVYS  336 (419)
T ss_pred             CCCCCeE---eCccC--CC-cCceECCCCCEEEEE
Confidence            8764322   22211  11 235788899744433

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.09  E-value=0.0045  Score=59.69  Aligned_cols=159  Identities=15%  Similarity=0.111  Sum_probs=90.9

Q ss_pred             eEEEEe-CC-ceEEEEecCCCcccCeEEcCCCC-EEEEeCC---CcEEEEc-CCC-cEEEeeecCCcccccccceEEccC
Q 017371          100 WIKRLQ-DG-TWVNWKFIDSQTLVGLTSTKEGH-LIICDNA---NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASD  171 (372)
Q Consensus       100 ~i~~~~-~g-~~~~~~~~~~~p~~gl~~d~dG~-l~v~~~~---~gv~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~d~d  171 (372)
                      .|+..+ +| ..+.+........ ..++.+||+ |+++...   ..++.++ .+| ...+.. ..+    ....+++.+|
T Consensus       171 ~l~~~d~~g~~~~~l~~~~~~~~-~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~-~~~----~~~~~~~spD  244 (417)
T TIGR02800       171 ELQVADYDGANPQTITRSREPIL-SPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS-FPG----MNGAPAFSPD  244 (417)
T ss_pred             eEEEEcCCCCCCEEeecCCCcee-cccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec-CCC----CccceEECCC
Confidence            466666 43 3444443322344 778889997 3333322   2477888 566 444322 122    2335788899


Q ss_pred             Cc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeC--CCCeEEEEEc
Q 017371          172 GS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES--WKFRCRKYWL  248 (372)
Q Consensus       172 G~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~--~~~~i~~~~~  248 (372)
                      |+ |+++...               .....||.+|.++++.+.+...........|++||+.++++..  +...|+.+++
T Consensus       245 g~~l~~~~~~---------------~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~  309 (417)
T TIGR02800       245 GSKLAVSLSK---------------DGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDA  309 (417)
T ss_pred             CCEEEEEECC---------------CCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEEC
Confidence            85 6665321               1345699999987776665443322335688999998876643  2347888888


Q ss_pred             cCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEe
Q 017371          249 KGERKGKLETFAENLPGAPDNINLAPDGTFWIAII  283 (372)
Q Consensus       249 ~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~  283 (372)
                      ++.+.   ..+. ..........++++|+..+...
T Consensus       310 ~~~~~---~~l~-~~~~~~~~~~~spdg~~i~~~~  340 (417)
T TIGR02800       310 DGGEV---RRLT-FRGGYNASPSWSPDGDLIAFVH  340 (417)
T ss_pred             CCCCE---EEee-cCCCCccCeEECCCCCEEEEEE
Confidence            65432   2222 1122345677888886544443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.02  E-value=0.0085  Score=58.16  Aligned_cols=153  Identities=17%  Similarity=0.188  Sum_probs=86.6

Q ss_pred             EEEEe-CC-ceEEEEecCCCcccCeEEcCCCC-E-EEEeCC--CcEEEEc-CCC-cEEEeeecCCcccccccceEEccCC
Q 017371          101 IKRLQ-DG-TWVNWKFIDSQTLVGLTSTKEGH-L-IICDNA--NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDG  172 (372)
Q Consensus       101 i~~~~-~g-~~~~~~~~~~~p~~gl~~d~dG~-l-~v~~~~--~gv~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~d~dG  172 (372)
                      |+..| +| ..+.+........ ...+.|||+ | |+....  ..|+.++ .+| .+.+... .+    ......+.+||
T Consensus       181 l~~~d~~g~~~~~l~~~~~~~~-~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~-~g----~~~~~~~SpDG  254 (430)
T PRK00178        181 LQRSDYDGARAVTLLQSREPIL-SPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNF-EG----LNGAPAWSPDG  254 (430)
T ss_pred             EEEECCCCCCceEEecCCCcee-eeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCC-CC----CcCCeEECCCC
Confidence            44455 44 3333333222334 778999996 4 333222  2478888 556 5444221 21    12356888998


Q ss_pred             c-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCC--CCeEEEEEcc
Q 017371          173 S-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW--KFRCRKYWLK  249 (372)
Q Consensus       173 ~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~--~~~i~~~~~~  249 (372)
                      + |+++...               .+...||.+|.++++.+.+...........|+|||+.++++...  ...|+.++++
T Consensus       255 ~~la~~~~~---------------~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~  319 (430)
T PRK00178        255 SKLAFVLSK---------------DGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVN  319 (430)
T ss_pred             CEEEEEEcc---------------CCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECC
Confidence            5 6654321               13357999999988877655433334457899999988776532  3478888876


Q ss_pred             CCCCcceeeeccCCCCCCceeEEcCCCCE
Q 017371          250 GERKGKLETFAENLPGAPDNINLAPDGTF  278 (372)
Q Consensus       250 g~~~~~~~~~~~~~~g~p~~i~~d~~G~l  278 (372)
                      +.+..   .+.. .........+++||+.
T Consensus       320 ~g~~~---~lt~-~~~~~~~~~~Spdg~~  344 (430)
T PRK00178        320 GGRAE---RVTF-VGNYNARPRLSADGKT  344 (430)
T ss_pred             CCCEE---Eeec-CCCCccceEECCCCCE
Confidence            54322   2211 1112334567888853

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.01  E-value=0.0074  Score=59.63  Aligned_cols=253  Identities=12%  Similarity=0.046  Sum_probs=126.3

Q ss_pred             CCcEEEEecCCeEEEEe--CCceEEEEecCCC------cccCeEEcCCCCEEEEeC---------CCcEEEEc-CCCcEE
Q 017371           89 NGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQ------TLVGLTSTKEGHLIICDN---------ANGLHKVS-EDGVEN  150 (372)
Q Consensus        89 ~G~l~v~~~~g~i~~~~--~g~~~~~~~~~~~------p~~gl~~d~dG~l~v~~~---------~~gv~~~~-~~g~~~  150 (372)
                      ++.+|+++.+|.|+.+|  +|+...-......      ...+..+. ++.+|++..         ...++.+| .+|...
T Consensus       110 ~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~-~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~  188 (488)
T cd00216         110 PRKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV-KKLVIIGSSGAEFFACGVRGALRAYDVETGKLL  188 (488)
T ss_pred             CCeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE-CCEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence            37999999999999999  6765432222111      12133444 477777642         23488889 677322


Q ss_pred             EeeecC-Ccc--c---------------ccccceEEcc-CCcEEEEeCCCCCCCcccccc--cccccCCCeEEEEeCCCC
Q 017371          151 FLSYVN-GSK--L---------------RFANDVVEAS-DGSLYFTVSSSKYLPHEYCLD--ILEGKPHGQLLKYDPSSN  209 (372)
Q Consensus       151 l~~~~~-~~~--~---------------~~~~~l~~d~-dG~i~vtd~~~~~~~~~~~~~--~~~~~~~g~v~~~d~~t~  209 (372)
                      +..... ...  .               ......++|+ +|.+|+...... . ..+...  .......+.|+.+|.++|
T Consensus       189 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~-~-~~~~~~~~~~~~~~~~~l~Ald~~tG  266 (488)
T cd00216         189 WRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGS-P-WNWGGRRTPGDNLYTDSIVALDADTG  266 (488)
T ss_pred             eEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCC-C-CccCCccCCCCCCceeeEEEEcCCCC
Confidence            222111 000  0               0112356664 578998754210 0 000000  001123458999999999


Q ss_pred             eEEEEeCCc-------cCcceEEEe----cCCC---EEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCC
Q 017371          210 ITTLVADGF-------YFANGVALS----RDED---YVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPD  275 (372)
Q Consensus       210 ~~~~~~~~~-------~~~~gi~~~----~dg~---~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~  275 (372)
                      +..+.....       ..+....+.    -+|+   .+|+. +..++++.++..+.+.-    +.....  -.++..++ 
T Consensus       267 ~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g-~~~G~l~ald~~tG~~~----W~~~~~--~~~~~~~~-  338 (488)
T cd00216         267 KVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHA-PKNGFFYVLDRTTGKLI----SARPEV--EQPMAYDP-  338 (488)
T ss_pred             CEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEE-CCCceEEEEECCCCcEe----eEeEee--ccccccCC-
Confidence            988764321       111111221    2333   34444 45667999998654211    111110  12344554 


Q ss_pred             CCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEEC-CCCcEEEEEECCCCC------eecccee
Q 017371          276 GTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVA-EDGTIIRNLVDPTGQ------LMSFVTS  348 (372)
Q Consensus       276 G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~-~~g~~~~~~~~~~g~------~~~~~t~  348 (372)
                      +.+|+........                 ++..-.........+.+.++| .+|+.+.........      .....+.
T Consensus       339 ~~vyv~~~~~~~~-----------------~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~  401 (488)
T cd00216         339 GLVYLGAFHIPLG-----------------LPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGS  401 (488)
T ss_pred             ceEEEcccccccc-----------------CcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcc
Confidence            7788865321000                 000000001123468899999 569998876654111      0011234


Q ss_pred             eEEECCEEEEEeCCCCeEEEEe
Q 017371          349 GLQVDNHLYVISLTSNFIGKVQ  370 (372)
Q Consensus       349 ~~~~~g~L~igs~~~~~i~~~~  370 (372)
                      +...++.||+++.. ..|..++
T Consensus       402 ~~~~g~~v~~g~~d-G~l~ald  422 (488)
T cd00216         402 LATAGNLVFAGAAD-GYFRAFD  422 (488)
T ss_pred             eEecCCeEEEECCC-CeEEEEE
Confidence            55667889999854 4565555

The alignment model contains an 8-bladed beta-propeller.

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=97.99  E-value=0.0035  Score=55.89  Aligned_cols=157  Identities=11%  Similarity=0.076  Sum_probs=100.1

Q ss_pred             EecCCCCCCCccEEEcCCCcEEEEe-cCCeEEEEe-C-CceEEEEecCCCcccCeEEcCCCCEEEEeCCC-cEEEEc-C-
Q 017371           72 KVGEGSVNHPEDASMDKNGVIYTAT-RDGWIKRLQ-D-GTWVNWKFIDSQTLVGLTSTKEGHLIICDNAN-GLHKVS-E-  145 (372)
Q Consensus        72 ~~~~g~~~~p~~i~~d~~G~l~v~~-~~g~i~~~~-~-g~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~-gv~~~~-~-  145 (372)
                      ..+.|.-....+|.+.|.+..+++. .|..|.-|| . .+-.......++|  -.|+||+|-++.+..+. .|..+| + 
T Consensus        94 RYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~GLifA~~~~~~~IkLyD~Rs  171 (311)
T KOG1446|consen   94 RYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPEGLIFALANGSELIKLYDLRS  171 (311)
T ss_pred             EEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECCCCcEEEEecCCCeEEEEEecc
Confidence            3445655567778888877777776 577777777 2 2222222333343  46899999888776554 566666 2 


Q ss_pred             --CC-cEEEeeecCCcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccC-
Q 017371          146 --DG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYF-  220 (372)
Q Consensus       146 --~g-~~~l~~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~-  220 (372)
                        .| .+.+.-..  ......++|-+.+||+ |.+++                  ..+-++.+|.=+|.+..-..+... 
T Consensus       172 ~dkgPF~tf~i~~--~~~~ew~~l~FS~dGK~iLlsT------------------~~s~~~~lDAf~G~~~~tfs~~~~~  231 (311)
T KOG1446|consen  172 FDKGPFTTFSITD--NDEAEWTDLEFSPDGKSILLST------------------NASFIYLLDAFDGTVKSTFSGYPNA  231 (311)
T ss_pred             cCCCCceeEccCC--CCccceeeeEEcCCCCEEEEEe------------------CCCcEEEEEccCCcEeeeEeeccCC
Confidence              34 55553322  2345778999999996 55554                  345678888766775554444333 


Q ss_pred             ---cceEEEecCCCEEEEEeCCCCeEEEEEccCC
Q 017371          221 ---ANGVALSRDEDYVVVCESWKFRCRKYWLKGE  251 (372)
Q Consensus       221 ---~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~  251 (372)
                         |-...++||+++++. ...+++|..|+++..
T Consensus       232 ~~~~~~a~ftPds~Fvl~-gs~dg~i~vw~~~tg  264 (311)
T KOG1446|consen  232 GNLPLSATFTPDSKFVLS-GSDDGTIHVWNLETG  264 (311)
T ss_pred             CCcceeEEECCCCcEEEE-ecCCCcEEEEEcCCC
Confidence               336678999995554 456778999998643

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=97.98  E-value=0.01  Score=52.26  Aligned_cols=217  Identities=15%  Similarity=0.165  Sum_probs=130.9

Q ss_pred             cEEEEecCCeEEEEe-C------Cce-EEEEecCCCcccCeEEcCCCCEEEEeCCCc-EEEEc-CCC--cEEEeeecCCc
Q 017371           91 VIYTATRDGWIKRLQ-D------GTW-VNWKFIDSQTLVGLTSTKEGHLIICDNANG-LHKVS-EDG--VENFLSYVNGS  158 (372)
Q Consensus        91 ~l~v~~~~g~i~~~~-~------g~~-~~~~~~~~~p~~gl~~d~dG~l~v~~~~~g-v~~~~-~~g--~~~l~~~~~~~  158 (372)
                      .++-++.|..+..++ +      |.+ +.+.--.-+.. +++..+||+..++....+ +..+| ..|  .+.+.    |.
T Consensus        30 ~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~-dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~----GH  104 (315)
T KOG0279|consen   30 ILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVS-DVVLSSDGNFALSASWDGTLRLWDLATGESTRRFV----GH  104 (315)
T ss_pred             eEEEcccceEEEEEEeccCccccCceeeeeeccceEec-ceEEccCCceEEeccccceEEEEEecCCcEEEEEE----ec
Confidence            344445677777776 2      111 12211111234 888899999888765545 56677 666  23232    11


Q ss_pred             ccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCC--ccCcceEEEecCCCEEEEE
Q 017371          159 KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG--FYFANGVALSRDEDYVVVC  236 (372)
Q Consensus       159 ~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~--~~~~~gi~~~~dg~~l~v~  236 (372)
                       ....-.+++++|.+-.++-                 ..+..+..+|..++..-.+.++  -..-+-+.|+|.....++.
T Consensus       105 -~~dVlsva~s~dn~qivSG-----------------SrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Iv  166 (315)
T KOG0279|consen  105 -TKDVLSVAFSTDNRQIVSG-----------------SRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIV  166 (315)
T ss_pred             -CCceEEEEecCCCceeecC-----------------CCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEE
Confidence             1234578898988766753                 3555677777653333223333  2344678899987445555


Q ss_pred             eCCCCeEEEE-EccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCcccccccc
Q 017371          237 ESWKFRCRKY-WLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFIT  315 (372)
Q Consensus       237 ~~~~~~i~~~-~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~  315 (372)
                      ..+.++..++ ++++-+...  .+. ...++..-+++.+||.+-.+...                               
T Consensus       167 s~s~DktvKvWnl~~~~l~~--~~~-gh~~~v~t~~vSpDGslcasGgk-------------------------------  212 (315)
T KOG0279|consen  167 SASWDKTVKVWNLRNCQLRT--TFI-GHSGYVNTVTVSPDGSLCASGGK-------------------------------  212 (315)
T ss_pred             EccCCceEEEEccCCcchhh--ccc-cccccEEEEEECCCCCEEecCCC-------------------------------
Confidence            5555555554 554432221  222 24456778999999999887543                               


Q ss_pred             CCCceEEEEEC-CCCcEEEEEECCCCCeeccceeeEEECCEEEEEeCCCCeEEEEeCC
Q 017371          316 LGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQLS  372 (372)
Q Consensus       316 ~~~~~~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~igs~~~~~i~~~~~~  372 (372)
                         .+.++-.| .+|+-++++..     +..+.++++..++.|++-..+..|-+++++
T Consensus       213 ---dg~~~LwdL~~~k~lysl~a-----~~~v~sl~fspnrywL~~at~~sIkIwdl~  262 (315)
T KOG0279|consen  213 ---DGEAMLWDLNEGKNLYSLEA-----FDIVNSLCFSPNRYWLCAATATSIKIWDLE  262 (315)
T ss_pred             ---CceEEEEEccCCceeEeccC-----CCeEeeEEecCCceeEeeccCCceEEEecc
Confidence               34444444 35666665543     235788888999999999999999998875

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=97.97  E-value=0.0029  Score=60.13  Aligned_cols=222  Identities=18%  Similarity=0.182  Sum_probs=120.5

Q ss_pred             EEcCCCcEEEEecCCeEEEEe-CCceEEEEecCC----CcccCeEEcCCCCEEEEeCCCcEEEEcC-CCcEEEeeecCCc
Q 017371           85 SMDKNGVIYTATRDGWIKRLQ-DGTWVNWKFIDS----QTLVGLTSTKEGHLIICDNANGLHKVSE-DGVENFLSYVNGS  158 (372)
Q Consensus        85 ~~d~~G~l~v~~~~g~i~~~~-~g~~~~~~~~~~----~p~~gl~~d~dG~l~v~~~~~gv~~~~~-~g~~~l~~~~~~~  158 (372)
                      .++.+|++|++..+|.|+.++ ++....|.....    ... +-.+..+|+||+++...-++.+|. +|...+.....+.
T Consensus        64 ~~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~-~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~  142 (370)
T COG1520          64 PADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLS-GPILGSDGKIYVGSWDGKLYALDASTGTLVWSRNVGGS  142 (370)
T ss_pred             cEeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceecc-CceEEeCCeEEEecccceEEEEECCCCcEEEEEecCCC
Confidence            366689999999999999999 332223433222    222 333334899999986544899994 7833333332331


Q ss_pred             ccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCC-----ccCcceEEEecCCCEE
Q 017371          159 KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-----FYFANGVALSRDEDYV  233 (372)
Q Consensus       159 ~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~-----~~~~~gi~~~~dg~~l  233 (372)
                       .. ..+-.+-.++.+|+..                  .++.++.+|.++|+..+....     ........ ..++ .+
T Consensus       143 -~~-~~~~~v~~~~~v~~~s------------------~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~-~v  200 (370)
T COG1520         143 -PY-YASPPVVGDGTVYVGT------------------DDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-IASG-TV  200 (370)
T ss_pred             -eE-EecCcEEcCcEEEEec------------------CCCeEEEEEccCCcEEEEEecCCccccccccCce-eecc-eE
Confidence             11 1122444688888852                  357899999998887664221     11112222 2334 47


Q ss_pred             EEEeCC-CCeEEEEEccCCC-CcceeeeccCC------CCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHh
Q 017371          234 VVCESW-KFRCRKYWLKGER-KGKLETFAENL------PGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAA  305 (372)
Q Consensus       234 ~v~~~~-~~~i~~~~~~g~~-~~~~~~~~~~~------~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~  305 (372)
                      |+.... +..++.+++.... ..+........      ...-.+-.+..++.+|.+...                     
T Consensus       201 y~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~---------------------  259 (370)
T COG1520         201 YVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYG---------------------  259 (370)
T ss_pred             EEecCCCcceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecC---------------------
Confidence            776553 4468888884332 11111000000      001122234445566666654                     


Q ss_pred             cCccccccccCCCceEEEEEC-CCCcEEEEEECCCC-Ceec-cceeeEEECCEEEEEeCCCC
Q 017371          306 YPKLFSQFITLGGGAHLIHVA-EDGTIIRNLVDPTG-QLMS-FVTSGLQVDNHLYVISLTSN  364 (372)
Q Consensus       306 ~p~~~~~~~~~~~~~~v~~~~-~~g~~~~~~~~~~g-~~~~-~~t~~~~~~g~L~igs~~~~  364 (372)
                                    +.+++++ ++|+.+..+..+.. .... ..+.....+|.+|+......
T Consensus       260 --------------g~~~~l~~~~G~~~W~~~~~~~~~~~~~~~~~~~~~dG~v~~~~~~~~  307 (370)
T COG1520         260 --------------GKLLCLDADTGELIWSFPAGGSVQGSGLYTTPVAGADGKVYIGFTDND  307 (370)
T ss_pred             --------------CeEEEEEcCCCceEEEEecccEeccCCeeEEeecCCCccEEEEEeccc
Confidence                          4588887 55999888877410 0011 12222223688888876544

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.96  E-value=0.0036  Score=56.69  Aligned_cols=154  Identities=14%  Similarity=0.154  Sum_probs=90.8

Q ss_pred             EEEcCCCc-EEEEe-----cCCeEEEEe-CC---ceEEEEecCCCcccCeEEcCCC-CEEEEeCC---C-----------
Q 017371           84 ASMDKNGV-IYTAT-----RDGWIKRLQ-DG---TWVNWKFIDSQTLVGLTSTKEG-HLIICDNA---N-----------  138 (372)
Q Consensus        84 i~~d~~G~-l~v~~-----~~g~i~~~~-~g---~~~~~~~~~~~p~~gl~~d~dG-~l~v~~~~---~-----------  138 (372)
                      -++++||+ ||++.     ..|.|-.+| ..   ++.+|...+-.|. -+.+.+|| .|.|++.+   +           
T Consensus        56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPH-el~l~pDG~tLvVANGGI~Thpd~GR~kLNl~  134 (305)
T PF07433_consen   56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPH-ELLLMPDGETLVVANGGIETHPDSGRAKLNLD  134 (305)
T ss_pred             EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChh-hEEEcCCCCEEEEEcCCCccCcccCceecChh
Confidence            45677885 55543     357888888 42   3455666666788 99999999 78888743   1           


Q ss_pred             ----cEEEEc-CCC--cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeE
Q 017371          139 ----GLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT  211 (372)
Q Consensus       139 ----gv~~~~-~~g--~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~  211 (372)
                          .|..+| .+|  ++...- .+.....++..|+++.+|.+|++-.   |+-...       ....-|...+.. +..
T Consensus       135 tM~psL~~ld~~sG~ll~q~~L-p~~~~~lSiRHLa~~~~G~V~~a~Q---~qg~~~-------~~~PLva~~~~g-~~~  202 (305)
T PF07433_consen  135 TMQPSLVYLDARSGALLEQVEL-PPDLHQLSIRHLAVDGDGTVAFAMQ---YQGDPG-------DAPPLVALHRRG-GAL  202 (305)
T ss_pred             hcCCceEEEecCCCceeeeeec-CccccccceeeEEecCCCcEEEEEe---cCCCCC-------ccCCeEEEEcCC-Ccc
Confidence                244454 445  222111 1122334788999999999999843   111110       011234445443 223


Q ss_pred             EEEeC------Ccc-CcceEEEecCCCEEEEEeCCCCeEEEEEccC
Q 017371          212 TLVAD------GFY-FANGVALSRDEDYVVVCESWKFRCRKYWLKG  250 (372)
Q Consensus       212 ~~~~~------~~~-~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g  250 (372)
                      +.+.-      .+. ..-.|+++++++.+.++.-..+++..++...
T Consensus       203 ~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~t  248 (305)
T PF07433_consen  203 RLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAAT  248 (305)
T ss_pred             eeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCC
Confidence            22211      111 1235889999998888887778888887654

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.95  E-value=0.0053  Score=60.63  Aligned_cols=117  Identities=13%  Similarity=0.071  Sum_probs=65.8

Q ss_pred             CCcEEEEecCCeEEEEe--CCceEEEEecCCC-----c---ccCeEEcCCCCEEEEeCCCcEEEEc-CCCcEEEeeecCC
Q 017371           89 NGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQ-----T---LVGLTSTKEGHLIICDNANGLHKVS-EDGVENFLSYVNG  157 (372)
Q Consensus        89 ~G~l~v~~~~g~i~~~~--~g~~~~~~~~~~~-----p---~~gl~~d~dG~l~v~~~~~gv~~~~-~~g~~~l~~~~~~  157 (372)
                      +|.+|+++.+|.|+.+|  +|+...-......     +   ..++++..++.+|+++....|+.+| ++|..........
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~  140 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGNND  140 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeecCCC
Confidence            68999999899999999  6654321111110     0   1133443238899987666789999 6783333222221


Q ss_pred             c---ccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEe
Q 017371          158 S---KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA  215 (372)
Q Consensus       158 ~---~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~  215 (372)
                      .   .........++ ++.+|+......+         ......+.|+.+|.+||+..+..
T Consensus       141 ~~~~~~~i~ssP~v~-~~~v~vg~~~~~~---------~~~~~~g~v~alD~~TG~~~W~~  191 (488)
T cd00216         141 QVPPGYTMTGAPTIV-KKLVIIGSSGAEF---------FACGVRGALRAYDVETGKLLWRF  191 (488)
T ss_pred             CcCcceEecCCCEEE-CCEEEEecccccc---------ccCCCCcEEEEEECCCCceeeEe
Confidence            1   00011122343 3778876432111         00123578999999999877754

The alignment model contains an 8-bladed beta-propeller.

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.95  E-value=0.0015  Score=64.62  Aligned_cols=87  Identities=14%  Similarity=0.051  Sum_probs=62.6

Q ss_pred             CCeEEEEeCCC-----CeEEEEeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCC------Ccceee-eccC-CC
Q 017371          198 HGQLLKYDPSS-----NITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGER------KGKLET-FAEN-LP  264 (372)
Q Consensus       198 ~g~v~~~d~~t-----~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~------~~~~~~-~~~~-~~  264 (372)
                      .++|..+|..+     .++......-..|.|++++|||+++|+++.....|..++....+      +..... ..+- +.
T Consensus       295 gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevG  374 (635)
T PRK02888        295 GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELG  374 (635)
T ss_pred             CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccC
Confidence            45788999876     34555556678899999999999999999988999999986422      111111 1111 11


Q ss_pred             CCCceeEEcCCCCEEEEEec
Q 017371          265 GAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       265 g~p~~i~~d~~G~lwva~~~  284 (372)
                      -.|--.++|.+|+.|++..-
T Consensus       375 lGPLHTaFDg~G~aytslf~  394 (635)
T PRK02888        375 LGPLHTAFDGRGNAYTTLFL  394 (635)
T ss_pred             CCcceEEECCCCCEEEeEee
Confidence            24888999999999999864

>PRK01029 tolB translocation protein TolB; Provisional

Probab=97.92  E-value=0.015  Score=56.41  Aligned_cols=170  Identities=15%  Similarity=0.112  Sum_probs=94.1

Q ss_pred             EEcCCCc----EEEEec--CCeEEEEe--CCceEEEEecCCCcccCeEEcCCCC-EEEEeCCC---cEEE--Ec-CC---
Q 017371           85 SMDKNGV----IYTATR--DGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNAN---GLHK--VS-ED---  146 (372)
Q Consensus        85 ~~d~~G~----l~v~~~--~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~-l~v~~~~~---gv~~--~~-~~---  146 (372)
                      .+.|||.    +|++..  ...|+..+  +|+.+.+....+... ..++.|||+ |.++....   .++.  ++ ..   
T Consensus       191 ~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~-~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~  269 (428)
T PRK01029        191 TWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQL-MPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAI  269 (428)
T ss_pred             eEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCcc-ceEECCCCCEEEEEECCCCCcceeEEEeecccCCC
Confidence            5677873    345543  34688888  566666655445555 778999995 44433211   2433  34 22   


Q ss_pred             C-cEEEeeecCCcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCC--CCeEEEEeCCccCcc
Q 017371          147 G-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS--SNITTLVADGFYFAN  222 (372)
Q Consensus       147 g-~~~l~~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~--t~~~~~~~~~~~~~~  222 (372)
                      | .+.+.....    ......++.+||+ |+++...               .+...||.++.+  +++.+.+........
T Consensus       270 g~~~~lt~~~~----~~~~~p~wSPDG~~Laf~s~~---------------~g~~~ly~~~~~~~g~~~~~lt~~~~~~~  330 (428)
T PRK01029        270 GKPRRLLNEAF----GTQGNPSFSPDGTRLVFVSNK---------------DGRPRIYIMQIDPEGQSPRLLTKKYRNSS  330 (428)
T ss_pred             CcceEeecCCC----CCcCCeEECCCCCEEEEEECC---------------CCCceEEEEECcccccceEEeccCCCCcc
Confidence            2 333322111    1223568899996 5554211               123468888754  233444433222334


Q ss_pred             eEEEecCCCEEEEEeCC--CCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCE
Q 017371          223 GVALSRDEDYVVVCESW--KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTF  278 (372)
Q Consensus       223 gi~~~~dg~~l~v~~~~--~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~l  278 (372)
                      ...|+|||+.++++...  ...|+.+++++.+   ...+... .+...+....+||+.
T Consensus       331 ~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~---~~~Lt~~-~~~~~~p~wSpDG~~  384 (428)
T PRK01029        331 CPAWSPDGKKIAFCSVIKGVRQICVYDLATGR---DYQLTTS-PENKESPSWAIDSLH  384 (428)
T ss_pred             ceeECCCCCEEEEEEcCCCCcEEEEEECCCCC---eEEccCC-CCCccceEECCCCCE
Confidence            57899999988877543  3578999987643   2223221 223456788889863

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=97.91  E-value=0.015  Score=52.03  Aligned_cols=232  Identities=13%  Similarity=0.137  Sum_probs=133.0

Q ss_pred             CCCccEEEcCCCcEEEEe-cCCeEEEEe--CCceE-EEEecCCCcccCeEE-cCCCCEEEEeC--CCcEEEEc-CCC--c
Q 017371           79 NHPEDASMDKNGVIYTAT-RDGWIKRLQ--DGTWV-NWKFIDSQTLVGLTS-TKEGHLIICDN--ANGLHKVS-EDG--V  148 (372)
Q Consensus        79 ~~p~~i~~d~~G~l~v~~-~~g~i~~~~--~g~~~-~~~~~~~~p~~gl~~-d~dG~l~v~~~--~~gv~~~~-~~g--~  148 (372)
                      ..+++|.++.+|...++. .+..|..|+  +|+.. .+...-=.+. -..+ .++..+.-+..  ...|..++ .+.  +
T Consensus        15 ~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~-~~~Fth~~~~~i~sStk~d~tIryLsl~dNkyl   93 (311)
T KOG1446|consen   15 GKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVD-LACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYL   93 (311)
T ss_pred             CceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeeccccccc-EEEEecCCceEEEccCCCCCceEEEEeecCceE
Confidence            368899999999777664 666788888  66533 3322100111 1223 23344333322  12355555 333  5


Q ss_pred             EEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEec
Q 017371          149 ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSR  228 (372)
Q Consensus       149 ~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~  228 (372)
                      +.+    +|-. ..++.|.+.|-+..+++-+                 .+..|..+|....+-.-+. .+..+.-.|++|
T Consensus        94 RYF----~GH~-~~V~sL~~sP~~d~FlS~S-----------------~D~tvrLWDlR~~~cqg~l-~~~~~pi~AfDp  150 (311)
T KOG1446|consen   94 RYF----PGHK-KRVNSLSVSPKDDTFLSSS-----------------LDKTVRLWDLRVKKCQGLL-NLSGRPIAAFDP  150 (311)
T ss_pred             EEc----CCCC-ceEEEEEecCCCCeEEecc-----------------cCCeEEeeEecCCCCceEE-ecCCCcceeECC
Confidence            544    3322 4677899999888888744                 3456666776544443333 234455678999


Q ss_pred             CCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCC--CCCCceeEEcCCCC-EEEEEecCchhHHHHhhcchhHHHHHHh
Q 017371          229 DEDYVVVCESWKFRCRKYWLKGERKGKLETFAENL--PGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAA  305 (372)
Q Consensus       229 dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~--~g~p~~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~r~~~~~  305 (372)
                      +|- ++.+..++..|.-|++..-..+....|.-+.  ...-.+|.+.+||. |.+++..                     
T Consensus       151 ~GL-ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~---------------------  208 (311)
T KOG1446|consen  151 EGL-IFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNA---------------------  208 (311)
T ss_pred             CCc-EEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCC---------------------
Confidence            995 4445555558888988633233344443221  11235689999995 5665554                     


Q ss_pred             cCccccccccCCCceEEEEEC-CCCcEEEEEECCCCCeeccceeeEEE-CCEEEEEeCCCCeEEEEeC
Q 017371          306 YPKLFSQFITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL  371 (372)
Q Consensus       306 ~p~~~~~~~~~~~~~~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~L~igs~~~~~i~~~~~  371 (372)
                                    +.++.+| .+|.++..+...... ....-++.+. ++...+++....+|.++++
T Consensus       209 --------------s~~~~lDAf~G~~~~tfs~~~~~-~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~  261 (311)
T KOG1446|consen  209 --------------SFIYLLDAFDGTVKSTFSGYPNA-GNLPLSATFTPDSKFVLSGSDDGTIHVWNL  261 (311)
T ss_pred             --------------CcEEEEEccCCcEeeeEeeccCC-CCcceeEEECCCCcEEEEecCCCcEEEEEc
Confidence                          4566666 579988888664332 1122344443 5566666666677777664

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=97.90  E-value=0.0049  Score=55.25  Aligned_cols=126  Identities=18%  Similarity=0.207  Sum_probs=79.6

Q ss_pred             ceEEEec--CCCEEEEEeCCCCeEEEEEccCCCCcceeeeccC-CCC--CCceeEEcCCCCEEEEEecCchhHHHHhhcc
Q 017371          222 NGVALSR--DEDYVVVCESWKFRCRKYWLKGERKGKLETFAEN-LPG--APDNINLAPDGTFWIAIIKLDARRMKILNSS  296 (372)
Q Consensus       222 ~gi~~~~--dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~-~~g--~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~  296 (372)
                      .|+++..  .+++||.++..+.+|-+|+-.=.+......|.+. +|.  -|-||. .-.|+|||+-....-..-|     
T Consensus       141 kGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIq-nig~~lyVtYA~qd~~~~d-----  214 (336)
T TIGR03118       141 KGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQ-NLGGTLYVTYAQQDADRND-----  214 (336)
T ss_pred             eeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCCCCCCCCCcceE-EECCeEEEEEEecCCcccc-----
Confidence            4677664  3679999999999999997432221111234332 222  366664 3457899986541100000     


Q ss_pred             hhHHHHHHhcCccccccccCCCceEEEEECCCCcEEEEEECCCCCeeccceeeEE--E-----CCEEEEEeCCCCeEEEE
Q 017371          297 KLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQ--V-----DNHLYVISLTSNFIGKV  369 (372)
Q Consensus       297 ~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~--~-----~g~L~igs~~~~~i~~~  369 (372)
                                      -......|.|-.||.+|+.++.+.+. |. ++.+-.+..  .     .|.|.||+.....|..+
T Consensus       215 ----------------~v~G~G~G~VdvFd~~G~l~~r~as~-g~-LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaF  276 (336)
T TIGR03118       215 ----------------EVAGAGLGYVNVFTLNGQLLRRVASS-GR-LNAPWGLAIAPESFGSLSGALLVGNFGDGTINAY  276 (336)
T ss_pred             ----------------cccCCCcceEEEEcCCCcEEEEeccC-Cc-ccCCceeeeChhhhCCCCCCeEEeecCCceeEEe
Confidence                            01245578999999999999998653 32 555555544  1     38899999999999988


Q ss_pred             eC
Q 017371          370 QL  371 (372)
Q Consensus       370 ~~  371 (372)
                      |.
T Consensus       277 D~  278 (336)
T TIGR03118       277 DP  278 (336)
T ss_pred             cC
Confidence            74

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=97.89  E-value=0.0068  Score=61.25  Aligned_cols=148  Identities=12%  Similarity=0.146  Sum_probs=93.1

Q ss_pred             CCccEEEcCCC-cEEEEecCCeEEEEeCC----ceEEEEecCCCcccCeEEcCCCCEEEEeCCCcEEEEc-CCC-cEEEe
Q 017371           80 HPEDASMDKNG-VIYTATRDGWIKRLQDG----TWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENFL  152 (372)
Q Consensus        80 ~p~~i~~d~~G-~l~v~~~~g~i~~~~~g----~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~-~~g-~~~l~  152 (372)
                      |=..|++|++| .|++.+.+|.|..++.+    +.+.+.. .+.+..+++.+. +.+..+...+-+.++. +++ ...+.
T Consensus        15 G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~-~g~~v~~ia~~s-~~f~~~s~~~tv~~y~fps~~~~~iL   92 (933)
T KOG1274|consen   15 GLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDI-SGELVSSIACYS-NHFLTGSEQNTVLRYKFPSGEEDTIL   92 (933)
T ss_pred             ceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhc-cCceeEEEeecc-cceEEeeccceEEEeeCCCCCcccee
Confidence            45679999988 56666689988888822    2333322 233333777653 4555555555677776 555 43333


Q ss_pred             eecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcc-eEEEecCCC
Q 017371          153 SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFAN-GVALSRDED  231 (372)
Q Consensus       153 ~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~-gi~~~~dg~  231 (372)
                      ..+..    ..+.++++.+|+..+.-+                 .+-.|-.++.++...+....+...|+ ++.++|.++
T Consensus        93 ~Rftl----p~r~~~v~g~g~~iaags-----------------dD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~  151 (933)
T KOG1274|consen   93 ARFTL----PIRDLAVSGSGKMIAAGS-----------------DDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGN  151 (933)
T ss_pred             eeeec----cceEEEEecCCcEEEeec-----------------CceeEEEEeccccchheeecccCCceeeeeEcCCCC
Confidence            33221    346889999997555422                 23346666766666666677777665 688999999


Q ss_pred             EEEEEeCCCCeEEEEEccCC
Q 017371          232 YVVVCESWKFRCRKYWLKGE  251 (372)
Q Consensus       232 ~l~v~~~~~~~i~~~~~~g~  251 (372)
                      +|-++. .++.|+.|++...
T Consensus       152 fLAvss-~dG~v~iw~~~~~  170 (933)
T KOG1274|consen  152 FLAVSS-CDGKVQIWDLQDG  170 (933)
T ss_pred             EEEEEe-cCceEEEEEcccc
Confidence            666665 4667999988754

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=97.88  E-value=0.0067  Score=56.43  Aligned_cols=190  Identities=15%  Similarity=0.184  Sum_probs=114.1

Q ss_pred             cccCeEEcCCCCEEEEeCCCcEEEEc--CCC--cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCccccccccc
Q 017371          119 TLVGLTSTKEGHLIICDNANGLHKVS--EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILE  194 (372)
Q Consensus       119 p~~gl~~d~dG~l~v~~~~~gv~~~~--~~g--~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~  194 (372)
                      |..++...+.|..++.....|-+.+.  .+|  ..+......+   -.....++.|||.|+.+                 
T Consensus       305 ~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~---v~~ts~~fHpDgLifgt-----------------  364 (506)
T KOG0289|consen  305 PVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSD---VEYTSAAFHPDGLIFGT-----------------  364 (506)
T ss_pred             cceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeecccc---ceeEEeeEcCCceEEec-----------------
Confidence            33488888999877776666766665  566  4433322111   12446789999999886                 


Q ss_pred             ccCCCeEEEEeCCCCeEEEEeCCccCc-ceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEc
Q 017371          195 GKPHGQLLKYDPSSNITTLVADGFYFA-NGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLA  273 (372)
Q Consensus       195 ~~~~g~v~~~d~~t~~~~~~~~~~~~~-~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d  273 (372)
                      +..++.|-.+|.+.+....-+.+...| ..+.|+..|- .+++......|..+|+.  |......+.....-....+.+|
T Consensus       365 gt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY-~Lat~add~~V~lwDLR--Kl~n~kt~~l~~~~~v~s~~fD  441 (506)
T KOG0289|consen  365 GTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGY-WLATAADDGSVKLWDLR--KLKNFKTIQLDEKKEVNSLSFD  441 (506)
T ss_pred             cCCCceEEEEEcCCccccccCCCCCCceeEEEeccCce-EEEEEecCCeEEEEEeh--hhcccceeeccccccceeEEEc
Confidence            346777888887655422222222222 3578887774 44555555568888875  3334444432111124568899


Q ss_pred             CCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEECCC---CcEEEEEECCCCCeeccceeeE
Q 017371          274 PDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED---GTIIRNLVDPTGQLMSFVTSGL  350 (372)
Q Consensus       274 ~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~---g~~~~~~~~~~g~~~~~~t~~~  350 (372)
                      ..|.+.+....                                  .-.|+.+...   -+.+..+++-.|    ..+.+.
T Consensus       442 ~SGt~L~~~g~----------------------------------~l~Vy~~~k~~k~W~~~~~~~~~sg----~st~v~  483 (506)
T KOG0289|consen  442 QSGTYLGIAGS----------------------------------DLQVYICKKKTKSWTEIKELADHSG----LSTGVR  483 (506)
T ss_pred             CCCCeEEeecc----------------------------------eeEEEEEecccccceeeehhhhccc----ccceee
Confidence            99977666644                                  3467777633   223444444444    367788


Q ss_pred             EECCEEEEEeCCCCeEEEE
Q 017371          351 QVDNHLYVISLTSNFIGKV  369 (372)
Q Consensus       351 ~~~g~L~igs~~~~~i~~~  369 (372)
                      +.+..-|+++-..+.+-++
T Consensus       484 Fg~~aq~l~s~smd~~l~~  502 (506)
T KOG0289|consen  484 FGEHAQYLASTSMDAILRL  502 (506)
T ss_pred             ecccceEEeeccchhheEE
Confidence            8777788888777776443

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.88  E-value=0.012  Score=57.67  Aligned_cols=179  Identities=16%  Similarity=0.227  Sum_probs=106.5

Q ss_pred             CccEEEcCCCcEEEEe-cCCeEEEEe--CCc---eEEEEecCC-CcccCeEEcCCCCEEEEeCC-CcEEEEc-CCC---c
Q 017371           81 PEDASMDKNGVIYTAT-RDGWIKRLQ--DGT---WVNWKFIDS-QTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG---V  148 (372)
Q Consensus        81 p~~i~~d~~G~l~v~~-~~g~i~~~~--~g~---~~~~~~~~~-~p~~gl~~d~dG~l~v~~~~-~gv~~~~-~~g---~  148 (372)
                      -.++.+.++|...++. .++.+..++  .++   .... .... ... ++++.+||...++... ..+..++ ++.   .
T Consensus       162 v~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l-~~h~~~v~-~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~  239 (456)
T KOG0266|consen  162 VTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLREL-SGHTRGVS-DVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNL  239 (456)
T ss_pred             eEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccc-ccccccee-eeEECCCCcEEEEecCCceEEEeeccCCCeEE
Confidence            3446677888665544 566555555  222   1111 1112 234 8999999987776554 4466666 333   3


Q ss_pred             EEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCcc-CcceEEEe
Q 017371          149 ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFY-FANGVALS  227 (372)
Q Consensus       149 ~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~-~~~gi~~~  227 (372)
                      +++.    +- ...++.+++.++|++.++-+                 .++.|..+|..+++......+.. .-++++++
T Consensus       240 ~~l~----gH-~~~v~~~~f~p~g~~i~Sgs-----------------~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~  297 (456)
T KOG0266|consen  240 KTLK----GH-STYVTSVAFSPDGNLLVSGS-----------------DDGTVRIWDVRTGECVRKLKGHSDGISGLAFS  297 (456)
T ss_pred             EEec----CC-CCceEEEEecCCCCEEEEec-----------------CCCcEEEEeccCCeEEEeeeccCCceEEEEEC
Confidence            4332    11 13568999999998888733                 56778888888777666555443 45678899


Q ss_pred             cCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccC-CCCCCceeEEcCCCCEEEEEec
Q 017371          228 RDEDYVVVCESWKFRCRKYWLKGERKGKLETFAEN-LPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       228 ~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~-~~g~p~~i~~d~~G~lwva~~~  284 (372)
                      +|++.++.+ +.++.|..|++.+....-.+.+... .+.....+.++++|.+.+....
T Consensus       298 ~d~~~l~s~-s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~  354 (456)
T KOG0266|consen  298 PDGNLLVSA-SYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL  354 (456)
T ss_pred             CCCCEEEEc-CCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC
Confidence            999866555 5577788888765431101112111 1111356778899965555444

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=97.85  E-value=0.0096  Score=53.27  Aligned_cols=172  Identities=17%  Similarity=0.067  Sum_probs=100.2

Q ss_pred             ccEEEcCCCcEEEEe--cCCeEEEEe-CC--ceEEEEecCCCcccCeEEcCCC---CEEEEeCCCc-EEEEcCCC-cEEE
Q 017371           82 EDASMDKNGVIYTAT--RDGWIKRLQ-DG--TWVNWKFIDSQTLVGLTSTKEG---HLIICDNANG-LHKVSEDG-VENF  151 (372)
Q Consensus        82 ~~i~~d~~G~l~v~~--~~g~i~~~~-~g--~~~~~~~~~~~p~~gl~~d~dG---~l~v~~~~~g-v~~~~~~g-~~~l  151 (372)
                      .++|++  | .|+++  .|-.|..|| ..  +...+....+... .+.|++.-   .|.-+. ..| +..++ .| .+.+
T Consensus        47 tavAVs--~-~~~aSGssDetI~IYDm~k~~qlg~ll~Hagsit-aL~F~~~~S~shLlS~s-dDG~i~iw~-~~~W~~~  120 (362)
T KOG0294|consen   47 TALAVS--G-PYVASGSSDETIHIYDMRKRKQLGILLSHAGSIT-ALKFYPPLSKSHLLSGS-DDGHIIIWR-VGSWELL  120 (362)
T ss_pred             eEEEec--c-eeEeccCCCCcEEEEeccchhhhcceeccccceE-EEEecCCcchhheeeec-CCCcEEEEE-cCCeEEe
Confidence            346664  3 45544  678899998 22  3333444455666 77777544   455543 344 44444 33 4333


Q ss_pred             eeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCC
Q 017371          152 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDED  231 (372)
Q Consensus       152 ~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~  231 (372)
                      ... -+-. ..+++|++.|.|+|-++..                 +++.+.-+|.-+|+.-.+..--..+.-+.|++.|.
T Consensus       121 ~sl-K~H~-~~Vt~lsiHPS~KLALsVg-----------------~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd  181 (362)
T KOG0294|consen  121 KSL-KAHK-GQVTDLSIHPSGKLALSVG-----------------GDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGD  181 (362)
T ss_pred             eee-cccc-cccceeEecCCCceEEEEc-----------------CCceeeeehhhcCccceeeccCCcceeeEEcCCCC
Confidence            221 2211 2488999999999998754                 34555556666665554443334455688999999


Q ss_pred             EEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 017371          232 YVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       232 ~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~  284 (372)
                      ++++...  ++|-.|.++..+...   ... .+..+.++..+..+.+.|+...
T Consensus       182 ~F~v~~~--~~i~i~q~d~A~v~~---~i~-~~~r~l~~~~l~~~~L~vG~d~  228 (362)
T KOG0294|consen  182 HFVVSGR--NKIDIYQLDNASVFR---EIE-NPKRILCATFLDGSELLVGGDN  228 (362)
T ss_pred             EEEEEec--cEEEEEecccHhHhh---hhh-ccccceeeeecCCceEEEecCC
Confidence            8888754  567777765432221   111 1233566777777777777654

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.85  E-value=0.0048  Score=54.97  Aligned_cols=183  Identities=11%  Similarity=0.127  Sum_probs=108.0

Q ss_pred             CeEEcCCCC-EEEEe-CCCcEEEEcCCC--cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccC
Q 017371          122 GLTSTKEGH-LIICD-NANGLHKVSEDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKP  197 (372)
Q Consensus       122 gl~~d~dG~-l~v~~-~~~gv~~~~~~g--~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~  197 (372)
                      +|.++|+-+ ||.+. ....++.++.+|  ++.++    -..++-+.+|..-.+|+.-++|.                 .
T Consensus        90 ~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiP----L~g~~DpE~Ieyig~n~fvi~dE-----------------R  148 (316)
T COG3204          90 SLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIP----LTGFSDPETIEYIGGNQFVIVDE-----------------R  148 (316)
T ss_pred             ceeeCCCcceEEEecCCCceEEEEecCCceEEEec----ccccCChhHeEEecCCEEEEEeh-----------------h
Confidence            899998875 55443 224588888777  55442    22356677888877777777764                 2


Q ss_pred             CCeE--EEEeCCCCeEEE-----EeCC----ccCcceEEEecCCCEEEEEeCCC-CeEEEEEccCCCCcc---------e
Q 017371          198 HGQL--LKYDPSSNITTL-----VADG----FYFANGVALSRDEDYVVVCESWK-FRCRKYWLKGERKGK---------L  256 (372)
Q Consensus       198 ~g~v--~~~d~~t~~~~~-----~~~~----~~~~~gi~~~~dg~~l~v~~~~~-~~i~~~~~~g~~~~~---------~  256 (372)
                      ..++  +.+|+++.....     -...    -..-.|+++++++..||++.-.+ .+|+.++..-.....         .
T Consensus       149 ~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~  228 (316)
T COG3204         149 DRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADR  228 (316)
T ss_pred             cceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCccccc
Confidence            3334  445554322111     1111    12234899999998899886533 456655532111110         0


Q ss_pred             eeeccCCCCCCceeEEcC-CCCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEECCCCcEEEEE
Q 017371          257 ETFAENLPGAPDNINLAP-DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNL  335 (372)
Q Consensus       257 ~~~~~~~~g~p~~i~~d~-~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~g~~~~~~  335 (372)
                      ..|...    ..++.+|+ .|++.|-+..                                  ...+++++.+|+++..+
T Consensus       229 ~~f~~D----vSgl~~~~~~~~LLVLS~E----------------------------------Sr~l~Evd~~G~~~~~l  270 (316)
T COG3204         229 DLFVLD----VSGLEFNAITNSLLVLSDE----------------------------------SRRLLEVDLSGEVIELL  270 (316)
T ss_pred             ceEeec----cccceecCCCCcEEEEecC----------------------------------CceEEEEecCCCeeeeE
Confidence            111111    35677775 4567776665                                  46899999999987766


Q ss_pred             ECCCC---C--eeccceeeEEE-CCEEEEEeCCC
Q 017371          336 VDPTG---Q--LMSFVTSGLQV-DNHLYVISLTS  363 (372)
Q Consensus       336 ~~~~g---~--~~~~~t~~~~~-~g~L~igs~~~  363 (372)
                      ..-.|   .  ..+...+++.+ +|.|||.|--+
T Consensus       271 sL~~g~~gL~~dipqaEGiamDd~g~lYIvSEPn  304 (316)
T COG3204         271 SLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSEPN  304 (316)
T ss_pred             EeccCCCCCcccCCCcceeEECCCCCEEEEecCC
Confidence            44333   1  23456777776 49999998543

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=97.82  E-value=0.0081  Score=54.28  Aligned_cols=204  Identities=20%  Similarity=0.236  Sum_probs=114.9

Q ss_pred             cEEEEe-cCCeEEEEe---CCceEEEEecCCCcccCeEEcCCCCEEEEeCCCcEEEEc-CCC-----------cEEE-ee
Q 017371           91 VIYTAT-RDGWIKRLQ---DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-----------VENF-LS  153 (372)
Q Consensus        91 ~l~v~~-~~g~i~~~~---~g~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~-~~g-----------~~~l-~~  153 (372)
                      .|.+++ ..|+++.+.   +|..........+|. ||+..+ ++||++... .|.++- .+.           -..+ +.
T Consensus        19 Sla~sTYQagkL~~ig~~~~g~l~~~~r~F~r~M-Gl~~~~-~~l~~~t~~-qiw~f~~~~n~l~~~~~~~~~D~~yvPr   95 (335)
T TIGR03032        19 SLAVTTYQAGKLFFIGLQPNGELDVFERTFPRPM-GLAVSP-QSLTLGTRY-QLWRFANVDNLLPAGQTHPGYDRLYVPR   95 (335)
T ss_pred             EEEEEeeecceEEEEEeCCCCcEEEEeeccCccc-eeeeeC-CeEEEEEcc-eeEEcccccccccccccCCCCCeEEeee
Confidence            455555 556666654   566666666778899 999974 689998754 588872 111           1111 11


Q ss_pred             --ecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEE----------eCCccCc
Q 017371          154 --YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV----------ADGFYFA  221 (372)
Q Consensus       154 --~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~----------~~~~~~~  221 (372)
                        ...|  ...+++|++ .++.+||.+.                 .-..|..+++. ..+...          .++-..-
T Consensus        96 ~~~~TG--didiHdia~-~~~~l~fVNT-----------------~fSCLatl~~~-~SF~P~WkPpFIs~la~eDRCHL  154 (335)
T TIGR03032        96 ASYVTG--DIDAHDLAL-GAGRLLFVNT-----------------LFSCLATVSPD-YSFVPLWKPPFISKLAPEDRCHL  154 (335)
T ss_pred             eeeecc--Ccchhheee-cCCcEEEEEC-----------------cceeEEEECCC-CccccccCCccccccCccCceee
Confidence              0111  235668888 6778888765                 23467777764 333221          1122345


Q ss_pred             ceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcc-------eeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhh
Q 017371          222 NGVALSRDEDYVVVCESWKFRCRKYWLKGERKGK-------LETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILN  294 (372)
Q Consensus       222 ~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~-------~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~  294 (372)
                      ||+|+. ||+--||+-.+...+..-|-++...+.       -+...+.+ .+|.+.+.- +|+||+.+..          
T Consensus       155 NGlA~~-~g~p~yVTa~~~sD~~~gWR~~~~~gG~vidv~s~evl~~GL-smPhSPRWh-dgrLwvldsg----------  221 (335)
T TIGR03032       155 NGMALD-DGEPRYVTALSQSDVADGWREGRRDGGCVIDIPSGEVVASGL-SMPHSPRWY-QGKLWLLNSG----------  221 (335)
T ss_pred             cceeee-CCeEEEEEEeeccCCcccccccccCCeEEEEeCCCCEEEcCc-cCCcCCcEe-CCeEEEEECC----------
Confidence            899985 677788765433212111111111111       12222222 356666653 5899999988          


Q ss_pred             cchhHHHHHHhcCccccccccCCCceEEEEECCC-CcEEEEEECCCCCeeccceeeEEECCEEEEEe
Q 017371          295 SSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQVDNHLYVIS  360 (372)
Q Consensus       295 ~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~-g~~~~~~~~~~g~~~~~~t~~~~~~g~L~igs  360 (372)
                                              .+.+.++|++ |+......-| |    .+.++...++.+++|-
T Consensus       222 ------------------------tGev~~vD~~~G~~e~Va~vp-G----~~rGL~f~G~llvVgm  259 (335)
T TIGR03032       222 ------------------------RGELGYVDPQAGKFQPVAFLP-G----FTRGLAFAGDFAFVGL  259 (335)
T ss_pred             ------------------------CCEEEEEcCCCCcEEEEEECC-C----CCcccceeCCEEEEEe
Confidence                                    6899999986 8776655554 3    2444555555555544

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.81  E-value=0.013  Score=57.37  Aligned_cols=151  Identities=15%  Similarity=0.212  Sum_probs=99.9

Q ss_pred             CCCCCCccEEEcCCCcEEE-EecCCeEEEEe---CCc-eEEEEecCCCcccCeEEcCCCCEEEEeCC-CcEEEEc-CCC-
Q 017371           76 GSVNHPEDASMDKNGVIYT-ATRDGWIKRLQ---DGT-WVNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG-  147 (372)
Q Consensus        76 g~~~~p~~i~~d~~G~l~v-~~~~g~i~~~~---~g~-~~~~~~~~~~p~~gl~~d~dG~l~v~~~~-~gv~~~~-~~g-  147 (372)
                      |.-....++++.++|...+ +..|+.|..|+   ++. .+++..-....+ +++|.++|++.+.... .-+..++ +.| 
T Consensus       201 ~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~-~~~f~p~g~~i~Sgs~D~tvriWd~~~~~  279 (456)
T KOG0266|consen  201 GHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVT-SVAFSPDGNLLVSGSDDGTVRIWDVRTGE  279 (456)
T ss_pred             ccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceE-EEEecCCCCEEEEecCCCcEEEEeccCCe
Confidence            4445667789999996444 44788888888   333 344443334456 9999999987777555 4477777 666 


Q ss_pred             -cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEE--EEeCCccCc---
Q 017371          148 -VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT--LVADGFYFA---  221 (372)
Q Consensus       148 -~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~--~~~~~~~~~---  221 (372)
                       .+.+....     ..+..+++.++|++.++-+                 .++.|..+|..+++..  ........+   
T Consensus       280 ~~~~l~~hs-----~~is~~~f~~d~~~l~s~s-----------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~  337 (456)
T KOG0266|consen  280 CVRKLKGHS-----DGISGLAFSPDGNLLVSAS-----------------YDGTIRVWDLETGSKLCLKLLSGAENSAPV  337 (456)
T ss_pred             EEEeeeccC-----CceEEEEECCCCCEEEEcC-----------------CCccEEEEECCCCceeeeecccCCCCCCce
Confidence             55553321     2567889999999887642                 5788999999888832  333344444   


Q ss_pred             ceEEEecCCCEEEEEeCCCCeEEEEEccC
Q 017371          222 NGVALSRDEDYVVVCESWKFRCRKYWLKG  250 (372)
Q Consensus       222 ~gi~~~~dg~~l~v~~~~~~~i~~~~~~g  250 (372)
                      .-+.++|++++++.... +..+..+++..
T Consensus       338 ~~~~fsp~~~~ll~~~~-d~~~~~w~l~~  365 (456)
T KOG0266|consen  338 TSVQFSPNGKYLLSASL-DRTLKLWDLRS  365 (456)
T ss_pred             eEEEECCCCcEEEEecC-CCeEEEEEccC
Confidence            56789999997776643 44565566653

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=97.79  E-value=0.023  Score=50.44  Aligned_cols=239  Identities=12%  Similarity=0.094  Sum_probs=142.3

Q ss_pred             EecCCCCCCCccEEEcCCCcEEE-EecCCeEEEEe---CCceEEEEecCCCcccCeEEcCCCCEEEEeCC-C--cEEEEc
Q 017371           72 KVGEGSVNHPEDASMDKNGVIYT-ATRDGWIKRLQ---DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNA-N--GLHKVS  144 (372)
Q Consensus        72 ~~~~g~~~~p~~i~~d~~G~l~v-~~~~g~i~~~~---~g~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~-~--gv~~~~  144 (372)
                      ++..|.+...-++-..+|.+..+ ++.||++..||   .++...+..+..-.. ..|+.|.|+...+..- +  -|+.+.
T Consensus        49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVM-tCA~sPSg~~VAcGGLdN~Csiy~ls  127 (343)
T KOG0286|consen   49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVM-TCAYSPSGNFVACGGLDNKCSIYPLS  127 (343)
T ss_pred             EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEE-EEEECCCCCeEEecCcCceeEEEecc
Confidence            44456666666777777775554 55899999999   455555555555666 8899999996555322 2  255555


Q ss_pred             -C--CCcEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCc-cC
Q 017371          145 -E--DGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF-YF  220 (372)
Q Consensus       145 -~--~g~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~-~~  220 (372)
                       +  +|.......+.+-. .+.....+-+|++|.-+                  .++.....+|.++++......+. ..
T Consensus       128 ~~d~~g~~~v~r~l~gHt-gylScC~f~dD~~ilT~------------------SGD~TCalWDie~g~~~~~f~GH~gD  188 (343)
T KOG0286|consen  128 TRDAEGNVRVSRELAGHT-GYLSCCRFLDDNHILTG------------------SGDMTCALWDIETGQQTQVFHGHTGD  188 (343)
T ss_pred             cccccccceeeeeecCcc-ceeEEEEEcCCCceEec------------------CCCceEEEEEcccceEEEEecCCccc
Confidence             3  34222222223321 24445555557776542                  24556677787777766655442 22


Q ss_pred             cceEEEec-CCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhH
Q 017371          221 ANGVALSR-DEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLI  299 (372)
Q Consensus       221 ~~gi~~~~-dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~  299 (372)
                      --++.++| +++ .|++..-+..-..+++..+  .-...|..+ ..-.+.+++-|+|.-+++...               
T Consensus       189 V~slsl~p~~~n-tFvSg~cD~~aklWD~R~~--~c~qtF~gh-esDINsv~ffP~G~afatGSD---------------  249 (343)
T KOG0286|consen  189 VMSLSLSPSDGN-TFVSGGCDKSAKLWDVRSG--QCVQTFEGH-ESDINSVRFFPSGDAFATGSD---------------  249 (343)
T ss_pred             EEEEecCCCCCC-eEEecccccceeeeeccCc--ceeEeeccc-ccccceEEEccCCCeeeecCC---------------
Confidence            34677888 776 7777654444444454332  223445422 233567888888887777665               


Q ss_pred             HHHHHhcCccccccccCCCceEEEEEC-CCCcEEEEEECCCCCeeccceeeEEE-CCEEEEEeCCCCeEEEEe
Q 017371          300 KHVLAAYPKLFSQFITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQ  370 (372)
Q Consensus       300 r~~~~~~p~~~~~~~~~~~~~~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~L~igs~~~~~i~~~~  370 (372)
                                         .+....|| ...+.+..|..+ .. ...++++.+. .|+|.++.+....+.++|
T Consensus       250 -------------------D~tcRlyDlRaD~~~a~ys~~-~~-~~gitSv~FS~SGRlLfagy~d~~c~vWD  301 (343)
T KOG0286|consen  250 -------------------DATCRLYDLRADQELAVYSHD-SI-ICGITSVAFSKSGRLLFAGYDDFTCNVWD  301 (343)
T ss_pred             -------------------CceeEEEeecCCcEEeeeccC-cc-cCCceeEEEcccccEEEeeecCCceeEee
Confidence                               44555566 335556666643 22 4567888886 588888877766665554

>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]

Probab=97.77  E-value=0.0034  Score=59.19  Aligned_cols=66  Identities=21%  Similarity=0.333  Sum_probs=45.8

Q ss_pred             cCcceEEEecCC------CEEEEEeCCCCeEEEEEccCCCCcceeeeccC-CCCCCceeEEcCCCCEEEEEec
Q 017371          219 YFANGVALSRDE------DYVVVCESWKFRCRKYWLKGERKGKLETFAEN-LPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       219 ~~~~gi~~~~dg------~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~-~~g~p~~i~~d~~G~lwva~~~  284 (372)
                      ..|.|++|....      +.++|...+.-.+.+...++...-..+.|... ..+.|.++++++||.|++++..
T Consensus       314 ~ApsGmaFy~G~~fP~~r~~lfV~~hgsw~~~~~~~~g~~~~~~~~fl~~d~~gR~~dV~v~~DGallv~~D~  386 (399)
T COG2133         314 IAPSGMAFYTGDLFPAYRGDLFVGAHGSWPVLRLRPDGNYKVVLTGFLSGDLGGRPRDVAVAPDGALLVLTDQ  386 (399)
T ss_pred             cccceeEEecCCcCccccCcEEEEeecceeEEEeccCCCcceEEEEEEecCCCCcccceEECCCCeEEEeecC
Confidence            346677776421      34888887776788877776533333444432 3478999999999999999876

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=97.77  E-value=0.0035  Score=54.28  Aligned_cols=206  Identities=17%  Similarity=0.133  Sum_probs=118.3

Q ss_pred             cCCeEEEEe--CCc-eEEEEecCCCcccCeEEcCCCCEEEEeCCCcEEEEc-CCC-cEEEeeecCCcccccccceEEccC
Q 017371           97 RDGWIKRLQ--DGT-WVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASD  171 (372)
Q Consensus        97 ~~g~i~~~~--~g~-~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~d~d  171 (372)
                      .|..|..+.  .|. .+++....+..+ .|.+.||++...+....-|..+| .++ ..++.+. ++.. +.+..+.|..|
T Consensus        18 YDhTIRfWqa~tG~C~rTiqh~dsqVN-rLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~-e~h~-kNVtaVgF~~d   94 (311)
T KOG0315|consen   18 YDHTIRFWQALTGICSRTIQHPDSQVN-RLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATF-EGHT-KNVTAVGFQCD   94 (311)
T ss_pred             CcceeeeeehhcCeEEEEEecCcccee-eEEEcCCcchhhhccCCeeEEEEccCCCCCceeEE-eccC-CceEEEEEeec
Confidence            677777777  665 566777778888 99999999876665555577777 444 3333221 2221 23456777788


Q ss_pred             CcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCC
Q 017371          172 GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGE  251 (372)
Q Consensus       172 G~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~  251 (372)
                      |+-.+|                 +..+|.+-..|...-..........--|.+.++|.+..|++++. ++.|+.+++...
T Consensus        95 grWMyT-----------------gseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dq-sg~irvWDl~~~  156 (311)
T KOG0315|consen   95 GRWMYT-----------------GSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQ-SGNIRVWDLGEN  156 (311)
T ss_pred             CeEEEe-----------------cCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecC-CCcEEEEEccCC
Confidence            874444                 23566666667654333333333333478999999988988875 456888888543


Q ss_pred             CCcceeeeccCCCCCCceeEEcCCCCEEEEEecCch-hHHHHhhcchhHHHHHHhcCccccc---cccCCCceEEEEECC
Q 017371          252 RKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDA-RRMKILNSSKLIKHVLAAYPKLFSQ---FITLGGGAHLIHVAE  327 (372)
Q Consensus       252 ~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~-~~~~~~~~~~~~r~~~~~~p~~~~~---~~~~~~~~~v~~~~~  327 (372)
                      .-. .+...+ .......+.+++||.+.+|.....+ -.++++..         ..-..+.|   +.+...++.--+++|
T Consensus       157 ~c~-~~liPe-~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~---------~~~s~l~P~~k~~ah~~~il~C~lSP  225 (311)
T KOG0315|consen  157 SCT-HELIPE-DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNH---------QTASELEPVHKFQAHNGHILRCLLSP  225 (311)
T ss_pred             ccc-cccCCC-CCcceeeEEEcCCCcEEEEecCCccEEEEEccCC---------CccccceEhhheecccceEEEEEECC
Confidence            111 111111 1122456777888877777654221 12222210         00011111   233566666677788


Q ss_pred             CCcEEEE
Q 017371          328 DGTIIRN  334 (372)
Q Consensus       328 ~g~~~~~  334 (372)
                      ++|.+..
T Consensus       226 d~k~lat  232 (311)
T KOG0315|consen  226 DVKYLAT  232 (311)
T ss_pred             CCcEEEe
Confidence            8877653

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=97.73  E-value=0.006  Score=60.47  Aligned_cols=181  Identities=14%  Similarity=0.140  Sum_probs=107.2

Q ss_pred             CCccEEEcCCCcEEEEe-cCCeEEEEe--C-CceEEEEecCCCcccCeEEcCCCCEEEEeCCC--cEEEEc-CCC--cEE
Q 017371           80 HPEDASMDKNGVIYTAT-RDGWIKRLQ--D-GTWVNWKFIDSQTLVGLTSTKEGHLIICDNAN--GLHKVS-EDG--VEN  150 (372)
Q Consensus        80 ~p~~i~~d~~G~l~v~~-~~g~i~~~~--~-g~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~--gv~~~~-~~g--~~~  150 (372)
                      +...+.+...|+..++. -||.|..||  . ...+++..+...-...+++||.|.|.++....  .++.++ .+|  +.+
T Consensus       394 ~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDi  473 (893)
T KOG0291|consen  394 GVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDI  473 (893)
T ss_pred             ceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeeh
Confidence            44456666677655554 688888888  2 24555544322223378999999988875442  578888 778  333


Q ss_pred             EeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEe--CCCCeEEEEeCCccCcceEEEec
Q 017371          151 FLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYD--PSSNITTLVADGFYFANGVALSR  228 (372)
Q Consensus       151 l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d--~~t~~~~~~~~~~~~~~gi~~~~  228 (372)
                      | ...+|    .+.++.++++|.+.++-+                 .+..|..+|  ...++++.+. -....-++++.|
T Consensus       474 L-sGHEg----PVs~l~f~~~~~~LaS~S-----------------WDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrP  530 (893)
T KOG0291|consen  474 L-SGHEG----PVSGLSFSPDGSLLASGS-----------------WDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRP  530 (893)
T ss_pred             h-cCCCC----cceeeEEccccCeEEecc-----------------ccceEEEEEeeccCceeeeEe-eccceeEEEEcC
Confidence            3 33233    356889999999887643                 233344433  2335666543 223455789999


Q ss_pred             CCCEEEEEeCCCCeEEEEEccCC-CCcce-------------eeeccC---CCCCCceeEEcCCCCEEEEEec
Q 017371          229 DEDYVVVCESWKFRCRKYWLKGE-RKGKL-------------ETFAEN---LPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       229 dg~~l~v~~~~~~~i~~~~~~g~-~~~~~-------------~~~~~~---~~g~p~~i~~d~~G~lwva~~~  284 (372)
                      ||+.+-|+.. ++.|..|+.+.. ..+..             +.+...   ....-..|+...||+..++...
T Consensus       531 dG~elaVaTl-dgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~  602 (893)
T KOG0291|consen  531 DGKELAVATL-DGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGE  602 (893)
T ss_pred             CCCeEEEEEe-cceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCC
Confidence            9998888764 456777776422 11111             111111   0011235888999988887654

>PRK13684 Ycf48-like protein; Provisional

Probab=97.73  E-value=0.041  Score=51.48  Aligned_cols=178  Identities=13%  Similarity=0.177  Sum_probs=86.1

Q ss_pred             CCccEEEcCCCcEEEEecCCeEEEEe-CC-ceEEEEecC---CCcccCeEEcCCCCEEEEeCCCcEEEEcCCC--cEEEe
Q 017371           80 HPEDASMDKNGVIYTATRDGWIKRLQ-DG-TWVNWKFID---SQTLVGLTSTKEGHLIICDNANGLHKVSEDG--VENFL  152 (372)
Q Consensus        80 ~p~~i~~d~~G~l~v~~~~g~i~~~~-~g-~~~~~~~~~---~~p~~gl~~d~dG~l~v~~~~~gv~~~~~~g--~~~l~  152 (372)
                      ...+|++..+.+.|+....|.|++-. .| .++......   ..+...++++. ++.|++.....+++-...|  .+.+.
T Consensus        47 ~l~~v~F~d~~~g~avG~~G~il~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~-~~~~~~G~~g~i~~S~DgG~tW~~~~  125 (334)
T PRK13684         47 NLLDIAFTDPNHGWLVGSNRTLLETNDGGETWEERSLDLPEENFRLISISFKG-DEGWIVGQPSLLLHTTDGGKNWTRIP  125 (334)
T ss_pred             ceEEEEEeCCCcEEEEECCCEEEEEcCCCCCceECccCCcccccceeeeEEcC-CcEEEeCCCceEEEECCCCCCCeEcc
Confidence            34456666555656544567777765 33 355432211   12222777763 4577775444455544444  44432


Q ss_pred             ee--cCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCc-cCcceEEEecC
Q 017371          153 SY--VNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF-YFANGVALSRD  229 (372)
Q Consensus       153 ~~--~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~-~~~~gi~~~~d  229 (372)
                      ..  .++    .+..+....++.+|+..                  ..|.|++=+-.....+.+..+. ..-+++.+.++
T Consensus       126 ~~~~~~~----~~~~i~~~~~~~~~~~g------------------~~G~i~~S~DgG~tW~~~~~~~~g~~~~i~~~~~  183 (334)
T PRK13684        126 LSEKLPG----SPYLITALGPGTAEMAT------------------NVGAIYRTTDGGKNWEALVEDAAGVVRNLRRSPD  183 (334)
T ss_pred             CCcCCCC----CceEEEEECCCcceeee------------------ccceEEEECCCCCCceeCcCCCcceEEEEEECCC
Confidence            21  122    12233333334455532                  3466776654434455443332 22356777787


Q ss_pred             CCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 017371          230 EDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       230 g~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~  284 (372)
                      +..+ +... +..+++-.-++.+  ..+...........++.+.++|++|+....
T Consensus       184 g~~v-~~g~-~G~i~~s~~~gg~--tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~  234 (334)
T PRK13684        184 GKYV-AVSS-RGNFYSTWEPGQT--AWTPHQRNSSRRLQSMGFQPDGNLWMLARG  234 (334)
T ss_pred             CeEE-EEeC-CceEEEEcCCCCC--eEEEeeCCCcccceeeeEcCCCCEEEEecC
Confidence            7533 3332 3345553223321  111111112223567788888999887654

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.70  E-value=0.011  Score=50.12  Aligned_cols=49  Identities=16%  Similarity=0.127  Sum_probs=35.0

Q ss_pred             CCeEEEEeCCCCeEEEEeC-------------CccCcceEEEecCCCEEEEEeCCCCeEEEE
Q 017371          198 HGQLLKYDPSSNITTLVAD-------------GFYFANGVALSRDEDYVVVCESWKFRCRKY  246 (372)
Q Consensus       198 ~g~v~~~d~~t~~~~~~~~-------------~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~  246 (372)
                      +.+|.|+||++|++....+             ...-.||||..++++.+|++.-.-..++-+
T Consensus       195 t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~wp~lfEV  256 (262)
T COG3823         195 TTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGKLWPLLFEV  256 (262)
T ss_pred             ecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecCcCceeEEE
Confidence            3579999999998876532             223579999999998899986543344433

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=97.69  E-value=0.022  Score=52.02  Aligned_cols=152  Identities=12%  Similarity=0.110  Sum_probs=93.8

Q ss_pred             EEecCCCcccCeEEcCCCCEEEEeCC--CcEEEEc-CCC-cEEEe-eecCCcccccccceEEccCCcEEEEeCCCCCCCc
Q 017371          112 WKFIDSQTLVGLTSTKEGHLIICDNA--NGLHKVS-EDG-VENFL-SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPH  186 (372)
Q Consensus       112 ~~~~~~~p~~gl~~d~dG~l~v~~~~--~gv~~~~-~~g-~~~l~-~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~  186 (372)
                      +..++..|...|...+||..|++.+.  ..+..++ ..| ...+. ...     ....-+...|||..+|+..       
T Consensus       190 l~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~gl-----gg~slLkwSPdgd~lfaAt-------  257 (445)
T KOG2139|consen  190 LQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGL-----GGFSLLKWSPDGDVLFAAT-------  257 (445)
T ss_pred             eeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCC-----CceeeEEEcCCCCEEEEec-------
Confidence            44455566668899999999888554  3577888 556 44443 221     2334577899998777643       


Q ss_pred             ccccccccccCCCeEEEEeC--CCCeEEEEeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCC------c--ce
Q 017371          187 EYCLDILEGKPHGQLLKYDP--SSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERK------G--KL  256 (372)
Q Consensus       187 ~~~~~~~~~~~~g~v~~~d~--~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~------~--~~  256 (372)
                                .+ +++++=.  .+...+....+-..-.+-+++|+|++|+++-++..+|+....+++..      +  ..
T Consensus       258 ----------~d-avfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~  326 (445)
T KOG2139|consen  258 ----------CD-AVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRV  326 (445)
T ss_pred             ----------cc-ceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceee
Confidence                      22 2333321  11222223333335567789999999999999999999887665311      0  11


Q ss_pred             eeeccC-----------CCCCCceeEEcCCCCEEEEEecCc
Q 017371          257 ETFAEN-----------LPGAPDNINLAPDGTFWIAIIKLD  286 (372)
Q Consensus       257 ~~~~~~-----------~~g~p~~i~~d~~G~lwva~~~~~  286 (372)
                      ....+.           ..|.+..++.|+.|+..+......
T Consensus       327 lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~  367 (445)
T KOG2139|consen  327 LLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQ  367 (445)
T ss_pred             eeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCC
Confidence            111110           134577899999998888887643

>PRK01742 tolB translocation protein TolB; Provisional

Probab=97.67  E-value=0.029  Score=54.53  Aligned_cols=152  Identities=14%  Similarity=0.095  Sum_probs=84.8

Q ss_pred             eEEEEe-CCc-eEEEEecCCCcccCeEEcCCCC-EEEEeCC---CcEEEEc-CCC-cEEEeeecCCcccccccceEEccC
Q 017371          100 WIKRLQ-DGT-WVNWKFIDSQTLVGLTSTKEGH-LIICDNA---NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASD  171 (372)
Q Consensus       100 ~i~~~~-~g~-~~~~~~~~~~p~~gl~~d~dG~-l~v~~~~---~gv~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~d~d  171 (372)
                      .|+.+| +|. .+.+........ ...+.|||+ |..+...   ..|+.++ .+| .+.+.. ..+    ....+++.+|
T Consensus       185 ~i~i~d~dg~~~~~lt~~~~~v~-~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~-~~g----~~~~~~wSPD  258 (429)
T PRK01742        185 EVRVADYDGFNQFIVNRSSQPLM-SPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVAS-FRG----HNGAPAFSPD  258 (429)
T ss_pred             EEEEECCCCCCceEeccCCCccc-cceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEec-CCC----ccCceeECCC
Confidence            455555 443 222222222334 889999996 3333222   2378888 556 444432 222    1235789999


Q ss_pred             Cc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeC--CCCeEEEEEc
Q 017371          172 GS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES--WKFRCRKYWL  248 (372)
Q Consensus       172 G~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~--~~~~i~~~~~  248 (372)
                      |+ |+++-..               .+.-.||.+|.++++.+.+..........+|+|||+.++++..  +..+|+.++.
T Consensus       259 G~~La~~~~~---------------~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~  323 (429)
T PRK01742        259 GSRLAFASSK---------------DGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSA  323 (429)
T ss_pred             CCEEEEEEec---------------CCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEEC
Confidence            96 5554211               1233689999887877666544334457889999998887653  3346777766


Q ss_pred             cCCCCcceeeeccCCCCCCceeEEcCCCCEE
Q 017371          249 KGERKGKLETFAENLPGAPDNINLAPDGTFW  279 (372)
Q Consensus       249 ~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lw  279 (372)
                      .+...   ... . ..+  .+..+.+||+..
T Consensus       324 ~~~~~---~~l-~-~~~--~~~~~SpDG~~i  347 (429)
T PRK01742        324 SGGGA---SLV-G-GRG--YSAQISADGKTL  347 (429)
T ss_pred             CCCCe---EEe-c-CCC--CCccCCCCCCEE
Confidence            54321   222 1 112  245677888643

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=97.66  E-value=0.047  Score=52.20  Aligned_cols=182  Identities=16%  Similarity=0.202  Sum_probs=100.0

Q ss_pred             CccEEEcCCCcEEEEe-cCCeEEEEe--CCc-eEEEEe---cCCCcccCeEEcCCCCEEEE-eCCCcEEEEc-CCC--cE
Q 017371           81 PEDASMDKNGVIYTAT-RDGWIKRLQ--DGT-WVNWKF---IDSQTLVGLTSTKEGHLIIC-DNANGLHKVS-EDG--VE  149 (372)
Q Consensus        81 p~~i~~d~~G~l~v~~-~~g~i~~~~--~g~-~~~~~~---~~~~p~~gl~~d~dG~l~v~-~~~~gv~~~~-~~g--~~  149 (372)
                      ..++-+.|||..+++. .||+|+.||  +|+ +..+..   --|..+ +|.+.||+.-+++ ..+.-+..+| .++  ++
T Consensus       193 V~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIf-alsWsPDs~~~~T~SaDkt~KIWdVs~~slv~  271 (603)
T KOG0318|consen  193 VNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIF-ALSWSPDSTQFLTVSADKTIKIWDVSTNSLVS  271 (603)
T ss_pred             eeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEE-EEEECCCCceEEEecCCceEEEEEeeccceEE
Confidence            5568888999988877 899999999  554 333431   224456 8888888864444 3334444555 333  33


Q ss_pred             EEeee--cCCc------------------------------------ccccccceEEccCCcEEEEeCCCCCCCcccccc
Q 017371          150 NFLSY--VNGS------------------------------------KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLD  191 (372)
Q Consensus       150 ~l~~~--~~~~------------------------------------~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~  191 (372)
                      .+...  .+..                                    -.+.+..+++.+||+-.                
T Consensus       272 t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i----------------  335 (603)
T KOG0318|consen  272 TWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTI----------------  335 (603)
T ss_pred             EeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEE----------------
Confidence            33211  0000                                    01122233333444322                


Q ss_pred             cccccCCCeEEEEeCCCCeEEEEeCCcc--CcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCce
Q 017371          192 ILEGKPHGQLLKYDPSSNITTLVADGFY--FANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDN  269 (372)
Q Consensus       192 ~~~~~~~g~v~~~d~~t~~~~~~~~~~~--~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~  269 (372)
                       +.+.-+|.|..++..+|..-.+....+  .-.+++.+..+. ++.+. .++.|.++.+.+......+.+  .+...|-+
T Consensus       336 -~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~-~~t~g-~Dd~l~~~~~~~~~~t~~~~~--~lg~QP~~  410 (603)
T KOG0318|consen  336 -YSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGE-LFTIG-WDDTLRVISLKDNGYTKSEVV--KLGSQPKG  410 (603)
T ss_pred             -EeeccCceEEEEecCCccccccccccccceEEEEeecCCCc-EEEEe-cCCeEEEEecccCccccccee--ecCCCcee
Confidence             234456788888876665444321111  223555554343 55554 577899998865433333322  24446889


Q ss_pred             eEEcCCCC-EEEEEec
Q 017371          270 INLAPDGT-FWIAIIK  284 (372)
Q Consensus       270 i~~d~~G~-lwva~~~  284 (372)
                      +++.++|. +-+++..
T Consensus       411 lav~~d~~~avv~~~~  426 (603)
T KOG0318|consen  411 LAVLSDGGTAVVACIS  426 (603)
T ss_pred             EEEcCCCCEEEEEecC
Confidence            99999985 5555544

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=97.65  E-value=0.011  Score=55.34  Aligned_cols=230  Identities=17%  Similarity=0.189  Sum_probs=130.3

Q ss_pred             EEEcCCCc--EEEEecCCeEEEEe--CCceEEEEecCCCcc---cCeEEcCCCCEEEEeCCCc-EEEEc-CCC--cEEEe
Q 017371           84 ASMDKNGV--IYTATRDGWIKRLQ--DGTWVNWKFIDSQTL---VGLTSTKEGHLIICDNANG-LHKVS-EDG--VENFL  152 (372)
Q Consensus        84 i~~d~~G~--l~v~~~~g~i~~~~--~g~~~~~~~~~~~p~---~gl~~d~dG~l~v~~~~~g-v~~~~-~~g--~~~l~  152 (372)
                      ..+.++|.  ++++...-.+|.||  ..++..+..+.+..-   --+.+.++++..+.....| |+.+. .++  +..+.
T Consensus       263 a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K  342 (514)
T KOG2055|consen  263 AEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK  342 (514)
T ss_pred             eeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee
Confidence            44556774  55555566677888  667776665555431   1345667887544443344 44444 444  33221


Q ss_pred             eecCCcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEE--EeCCccCcceEEEecC
Q 017371          153 SYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL--VADGFYFANGVALSRD  229 (372)
Q Consensus       153 ~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~--~~~~~~~~~gi~~~~d  229 (372)
                        .+|    .+.++++++||+ ||++.                  +.|.||.+|........  ..++-.....+|.+.+
T Consensus       343 --ieG----~v~~~~fsSdsk~l~~~~------------------~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~n  398 (514)
T KOG2055|consen  343 --IEG----VVSDFTFSSDSKELLASG------------------GTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLN  398 (514)
T ss_pred             --ecc----EEeeEEEecCCcEEEEEc------------------CCceEEEEecCCcceEEEEeecCccceeeeeecCC
Confidence              122    456788989985 55542                  56789999986543322  3344445567888899


Q ss_pred             CCEEEEEeCCCCeEEEEEccCCCCcc-eeee--ccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhc
Q 017371          230 EDYVVVCESWKFRCRKYWLKGERKGK-LETF--AENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAY  306 (372)
Q Consensus       230 g~~l~v~~~~~~~i~~~~~~g~~~~~-~~~~--~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~  306 (372)
                      +. ++.+.+..+-|-.|+.+....+. ....  .+++..-.+.|.+.+|+.|..-+...                     
T Consensus       399 g~-ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~---------------------  456 (514)
T KOG2055|consen  399 GS-YLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRV---------------------  456 (514)
T ss_pred             Cc-eEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhc---------------------
Confidence            97 44555555556677755432221 1111  12333346678888888654333220                     


Q ss_pred             CccccccccCCCceEEEEECCCCcEEEEEECCCCCeeccceeeEEE--CCEEEEEeCCCCeEEEEeC
Q 017371          307 PKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV--DNHLYVISLTSNFIGKVQL  371 (372)
Q Consensus       307 p~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~--~g~L~igs~~~~~i~~~~~  371 (372)
                               ....-+++.+ |.-++..+|..+... +..++++.+.  +|.|-+|+-. .++..++|
T Consensus       457 ---------~knalrLVHv-PS~TVFsNfP~~n~~-vg~vtc~aFSP~sG~lAvGNe~-grv~l~kL  511 (514)
T KOG2055|consen  457 ---------KKNALRLVHV-PSCTVFSNFPTSNTK-VGHVTCMAFSPNSGYLAVGNEA-GRVHLFKL  511 (514)
T ss_pred             ---------cccceEEEec-cceeeeccCCCCCCc-ccceEEEEecCCCceEEeecCC-CceeeEee
Confidence                     1112233333 455666667666444 7789999986  5889998854 45555544

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.61  E-value=0.027  Score=56.07  Aligned_cols=112  Identities=16%  Similarity=0.257  Sum_probs=65.3

Q ss_pred             CCcEEEEecCCeEEEEe--CCceEEEEecCCC-----c-------ccCeEEcCCCCEEEEeCCCcEEEEc-CCCcEEEee
Q 017371           89 NGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQ-----T-------LVGLTSTKEGHLIICDNANGLHKVS-EDGVENFLS  153 (372)
Q Consensus        89 ~G~l~v~~~~g~i~~~~--~g~~~~~~~~~~~-----p-------~~gl~~d~dG~l~v~~~~~gv~~~~-~~g~~~l~~  153 (372)
                      +|.||+++.++.|+.+|  +|+.. |......     +       ..++++. ++++|+++....|+.+| .+|......
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~l-W~~~~~~~~~~~~~~~~~~~~rg~av~-~~~v~v~t~dg~l~ALDa~TGk~~W~~  146 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKEL-WKYDPKLPDDVIPVMCCDVVNRGVALY-DGKVFFGTLDARLVALDAKTGKVVWSK  146 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCcee-eEecCCCCcccccccccccccccceEE-CCEEEEEcCCCEEEEEECCCCCEEeec
Confidence            68999999889999999  66533 2221110     0       1144554 57899988777799999 778333222


Q ss_pred             ecCCcc--cccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEe
Q 017371          154 YVNGSK--LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA  215 (372)
Q Consensus       154 ~~~~~~--~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~  215 (372)
                      ......  ......-.+ .+|.||+...+..+            ...|.|+.+|.+||+..+..
T Consensus       147 ~~~~~~~~~~~tssP~v-~~g~Vivg~~~~~~------------~~~G~v~AlD~~TG~~lW~~  197 (527)
T TIGR03075       147 KNGDYKAGYTITAAPLV-VKGKVITGISGGEF------------GVRGYVTAYDAKTGKLVWRR  197 (527)
T ss_pred             ccccccccccccCCcEE-ECCEEEEeeccccc------------CCCcEEEEEECCCCceeEec
Confidence            211100  000111112 26788887543211            24678999999888877643

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=97.58  E-value=0.0032  Score=59.14  Aligned_cols=181  Identities=14%  Similarity=0.211  Sum_probs=113.2

Q ss_pred             CCccEEEcCCCcEEE-EecCCeEEEEe--CCceEEEEecCCCcccCeEEcCCC-CEEEEeCC-CcEEEEc-CCC--cEEE
Q 017371           80 HPEDASMDKNGVIYT-ATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEG-HLIICDNA-NGLHKVS-EDG--VENF  151 (372)
Q Consensus        80 ~p~~i~~d~~G~l~v-~~~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG-~l~v~~~~-~gv~~~~-~~g--~~~l  151 (372)
                      ....+.+..+|.=+. +..|..|.-||  .|+...--.....|. .+.+.||+ +++++... ..|..+| .+|  ++.+
T Consensus       260 ~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~-cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeY  338 (503)
T KOG0282|consen  260 PVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPT-CVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEY  338 (503)
T ss_pred             hhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCce-eeecCCCCCcEEEEecCCCcEEEEeccchHHHHHH
Confidence            455677777785444 44788888888  666544333444566 88888888 77776544 5688999 776  3322


Q ss_pred             eeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEE-EeC-CccCcceEEEecC
Q 017371          152 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VAD-GFYFANGVALSRD  229 (372)
Q Consensus       152 ~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~-~~~-~~~~~~gi~~~~d  229 (372)
                      .     ..+..+++|.+-++|+=+|+.+.                 ...+..++-....... ++. ....--.+.++|.
T Consensus       339 d-----~hLg~i~~i~F~~~g~rFissSD-----------------dks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~  396 (503)
T KOG0282|consen  339 D-----RHLGAILDITFVDEGRRFISSSD-----------------DKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPN  396 (503)
T ss_pred             H-----hhhhheeeeEEccCCceEeeecc-----------------CccEEEEEcCCCccchhhcchhhccCcceecCCC
Confidence            1     22356788999999988887542                 2234444432222111 111 1111225778898


Q ss_pred             CCEEEEEeCCCCeEEEEEccCC-CCcceeeecc-CCCCCCceeEEcCCCCEEEEEec
Q 017371          230 EDYVVVCESWKFRCRKYWLKGE-RKGKLETFAE-NLPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       230 g~~l~v~~~~~~~i~~~~~~g~-~~~~~~~~~~-~~~g~p~~i~~d~~G~lwva~~~  284 (372)
                      ++ .+.+.+..++|..|..... +....+.|.. ..+|++-.+.+.+||.+.++..+
T Consensus       397 ~~-~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGds  452 (503)
T KOG0282|consen  397 GK-WFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDS  452 (503)
T ss_pred             CC-eehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecC
Confidence            87 7778888899999876543 2223334432 25688889999999988877666

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=97.57  E-value=0.041  Score=49.44  Aligned_cols=201  Identities=15%  Similarity=0.167  Sum_probs=100.0

Q ss_pred             CccEEEcCCC-cEEEEecCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCCEEEEeCC-CcEEEEc-CCC--cEEEee
Q 017371           81 PEDASMDKNG-VIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG--VENFLS  153 (372)
Q Consensus        81 p~~i~~d~~G-~l~v~~~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~-~gv~~~~-~~g--~~~l~~  153 (372)
                      .+++-+.+.| .|-+|..+|+|.-||  +-.+.......-+|..++++.+||+..++.+. ..+..+| .+|  ...+.-
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf  105 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF  105 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc
Confidence            7888898888 456777999999998  32232222222356658999999988877543 3455555 444  222110


Q ss_pred             --ecCCc-------------cc-ccccc----------eEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCC
Q 017371          154 --YVNGS-------------KL-RFAND----------VVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS  207 (372)
Q Consensus       154 --~~~~~-------------~~-~~~~~----------l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~  207 (372)
                        ..-+.             .+ ..|.=          +..|++|.+=.+.+..-  .+.....+..+...|.+..||.+
T Consensus       106 ~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~--fdr~g~yIitGtsKGkllv~~a~  183 (405)
T KOG1273|consen  106 DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGV--FDRRGKYIITGTSKGKLLVYDAE  183 (405)
T ss_pred             cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcccccccccccc--ccCCCCEEEEecCcceEEEEecc
Confidence              00000             00 00111          11122222211111000  11112234456678899999987


Q ss_pred             CCeEEEEe--CCccCcceEEEecCCCEEEEEeCCCCeEEEEEccC---C-CCccee---eeccCCCC-CCceeEEcCCCC
Q 017371          208 SNITTLVA--DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKG---E-RKGKLE---TFAENLPG-APDNINLAPDGT  277 (372)
Q Consensus       208 t~~~~~~~--~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g---~-~~~~~~---~~~~~~~g-~p~~i~~d~~G~  277 (372)
                      |-+..--.  +....-..+.++..|+ .++.++.+.-|..|++..   . +.+..+   .+.+.... .=..++++.+|.
T Consensus       184 t~e~vas~rits~~~IK~I~~s~~g~-~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dge  262 (405)
T KOG1273|consen  184 TLECVASFRITSVQAIKQIIVSRKGR-FLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGE  262 (405)
T ss_pred             hheeeeeeeechheeeeEEEEeccCc-EEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCcc
Confidence            54332111  1112234577888887 555566565566676541   1 112222   11110000 114588899998


Q ss_pred             EEEEEec
Q 017371          278 FWIAIIK  284 (372)
Q Consensus       278 lwva~~~  284 (372)
                      +-+|...
T Consensus       263 Yv~a~s~  269 (405)
T KOG1273|consen  263 YVCAGSA  269 (405)
T ss_pred             EEEeccc
Confidence            7777654

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=97.55  E-value=0.024  Score=52.89  Aligned_cols=168  Identities=18%  Similarity=0.218  Sum_probs=95.9

Q ss_pred             CCCccEEEc-CCCcEEEEecCCe------EEEEe-C---Cc---eE-----EEEecCC--------CcccCeEEcCCCCE
Q 017371           79 NHPEDASMD-KNGVIYTATRDGW------IKRLQ-D---GT---WV-----NWKFIDS--------QTLVGLTSTKEGHL  131 (372)
Q Consensus        79 ~~p~~i~~d-~~G~l~v~~~~g~------i~~~~-~---g~---~~-----~~~~~~~--------~p~~gl~~d~dG~l  131 (372)
                      -+=.+|..+ .+|.+|.-+.+|.      ++.+. .   +.   ++     .+....+        ++- ||++.++|.+
T Consensus        20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~E-gi~~~~~g~~   98 (326)
T PF13449_consen   20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPE-GIAVPPDGSF   98 (326)
T ss_pred             CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChh-HeEEecCCCE
Confidence            344678888 5667776666666      77665 2   11   11     1112222        345 8999889999


Q ss_pred             EEEeCCC-------cEEEEcCCC--cEEEe--eec-------C-CcccccccceEEccCCc-EEEEeCCCCCCCcccccc
Q 017371          132 IICDNAN-------GLHKVSEDG--VENFL--SYV-------N-GSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLD  191 (372)
Q Consensus       132 ~v~~~~~-------gv~~~~~~g--~~~l~--~~~-------~-~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~  191 (372)
                      ||++.+.       .|++++.+|  .+.+.  ...       . -.......+|++.+||+ ||+...+...+-.... .
T Consensus        99 ~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~-~  177 (326)
T PF13449_consen   99 WISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA-N  177 (326)
T ss_pred             EEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc-c
Confidence            9997543       588899667  34332  211       1 12334667899999998 8988665322111000 0


Q ss_pred             cccccCCCeEEEEeCCCCe--EEEE---eC------CccCcceEEEecCCCEEEEEeCC-------CCeEEEEEccC
Q 017371          192 ILEGKPHGQLLKYDPSSNI--TTLV---AD------GFYFANGVALSRDEDYVVVCESW-------KFRCRKYWLKG  250 (372)
Q Consensus       192 ~~~~~~~g~v~~~d~~t~~--~~~~---~~------~~~~~~gi~~~~dg~~l~v~~~~-------~~~i~~~~~~g  250 (372)
                       ......-+|++||+.+..  ...+   .+      ....+..++.-+|++ ++|.+..       ..+|+++++.+
T Consensus       178 -~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~-lLvLER~~~~~~~~~~ri~~v~l~~  252 (326)
T PF13449_consen  178 -PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGR-LLVLERDFSPGTGNYKRIYRVDLSD  252 (326)
T ss_pred             -cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCc-EEEEEccCCCCccceEEEEEEEccc
Confidence             011122578999987522  2221   12      123334466667776 8888875       34677777653

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=97.53  E-value=0.051  Score=47.29  Aligned_cols=176  Identities=13%  Similarity=0.138  Sum_probs=101.9

Q ss_pred             cEEEcCCCcEEEEecCCeEEEEe--CCc---eEEEEecCCCcccCeEEcCCCCEEEEeCCCcEEEE-c-CCC--cEEEee
Q 017371           83 DASMDKNGVIYTATRDGWIKRLQ--DGT---WVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKV-S-EDG--VENFLS  153 (372)
Q Consensus        83 ~i~~d~~G~l~v~~~~g~i~~~~--~g~---~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~-~-~~g--~~~l~~  153 (372)
                      -+.+.+++....+...-.|..||  .++   +..+........ .+.|-.||+..++....|..++ | +.-  .+.+. 
T Consensus        45 rLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVt-aVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-  122 (311)
T KOG0315|consen   45 RLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVT-AVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-  122 (311)
T ss_pred             eEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceE-EEEEeecCeEEEecCCCceEEEEeccCcccchhcc-
Confidence            36777777655554444566666  333   334444444555 7778888987666666665554 3 321  11111 


Q ss_pred             ecCCcccccccceEEccC-CcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeE--EEEeCCccCcceEEEecCC
Q 017371          154 YVNGSKLRFANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT--TLVADGFYFANGVALSRDE  230 (372)
Q Consensus       154 ~~~~~~~~~~~~l~~d~d-G~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~--~~~~~~~~~~~gi~~~~dg  230 (372)
                         .  ...+|.+...++ +.|+++|.                  +|.|...|......  +.+.+...+-..+.+.+||
T Consensus       123 ---~--~spVn~vvlhpnQteLis~dq------------------sg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dg  179 (311)
T KOG0315|consen  123 ---H--NSPVNTVVLHPNQTELISGDQ------------------SGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDG  179 (311)
T ss_pred             ---C--CCCcceEEecCCcceEEeecC------------------CCcEEEEEccCCccccccCCCCCcceeeEEEcCCC
Confidence               1  124577888875 56777654                  56777777754422  2233444555678999999


Q ss_pred             CEEEEEeCCCCeEEEEEccCCC-Ccceeeec--cCCCCCCceeEEcCCCCEEEEEec
Q 017371          231 DYVVVCESWKFRCRKYWLKGER-KGKLETFA--ENLPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       231 ~~l~v~~~~~~~i~~~~~~g~~-~~~~~~~~--~~~~g~p~~i~~d~~G~lwva~~~  284 (372)
                      +.+..++ ++++++++++-+.. .+..+...  ....++.-...+.+|+.+.+++.+
T Consensus       180 sml~a~n-nkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ss  235 (311)
T KOG0315|consen  180 SMLAAAN-NKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSS  235 (311)
T ss_pred             cEEEEec-CCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecC
Confidence            9555544 56778888876532 22222211  112233445668999988887766

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=97.50  E-value=0.031  Score=49.65  Aligned_cols=167  Identities=15%  Similarity=0.183  Sum_probs=104.1

Q ss_pred             EcCCCcEEEEecCCeEEEEe--CCc-eEEEEecCCCcccCeEEcC-CCCEEEEeCC-CcEEEEc-CCC--cEEEeeecCC
Q 017371           86 MDKNGVIYTATRDGWIKRLQ--DGT-WVNWKFIDSQTLVGLTSTK-EGHLIICDNA-NGLHKVS-EDG--VENFLSYVNG  157 (372)
Q Consensus        86 ~d~~G~l~v~~~~g~i~~~~--~g~-~~~~~~~~~~p~~gl~~d~-dG~l~v~~~~-~gv~~~~-~~g--~~~l~~~~~~  157 (372)
                      +-+|+.|.+++.|.....||  .|. ...|..-.+... +|.+.| +++.||+..- .--..+| ++|  ++.+    +|
T Consensus       153 f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~-slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF----~g  227 (343)
T KOG0286|consen  153 FLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVM-SLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTF----EG  227 (343)
T ss_pred             EcCCCceEecCCCceEEEEEcccceEEEEecCCcccEE-EEecCCCCCCeEEecccccceeeeeccCcceeEee----cc
Confidence            33488999998888888888  554 555655566777 899988 8999998543 3355666 666  5544    22


Q ss_pred             cccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCC-CeEEEEeCC--ccCcceEEEecCCCEEE
Q 017371          158 SKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS-NITTLVADG--FYFANGVALSRDEDYVV  234 (372)
Q Consensus       158 ~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t-~~~~~~~~~--~~~~~gi~~~~dg~~l~  234 (372)
                      .. .-+|.+.+-|+|.-+.+-+                 .++....||... .++.++...  ...-+.++|+..|+.| 
T Consensus       228 he-sDINsv~ffP~G~afatGS-----------------DD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlL-  288 (343)
T KOG0286|consen  228 HE-SDINSVRFFPSGDAFATGS-----------------DDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLL-  288 (343)
T ss_pred             cc-cccceEEEccCCCeeeecC-----------------CCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEE-
Confidence            21 3578899999998877633                 333344444432 444444322  2334689999999844 


Q ss_pred             EEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEE
Q 017371          235 VCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFW  279 (372)
Q Consensus       235 v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lw  279 (372)
                      ++...+..+..++.-  +......+ ....+....+.+.+||.-.
T Consensus       289 fagy~d~~c~vWDtl--k~e~vg~L-~GHeNRvScl~~s~DG~av  330 (343)
T KOG0286|consen  289 FAGYDDFTCNVWDTL--KGERVGVL-AGHENRVSCLGVSPDGMAV  330 (343)
T ss_pred             EeeecCCceeEeecc--ccceEEEe-eccCCeeEEEEECCCCcEE
Confidence            454566777777642  11122222 2334456778888888543

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=97.48  E-value=0.012  Score=59.68  Aligned_cols=167  Identities=13%  Similarity=0.125  Sum_probs=99.4

Q ss_pred             cEEEEecCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCCEEEEeCC-CcEEEEc-CCC--cEEEeeecCCccccccc
Q 017371           91 VIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG--VENFLSYVNGSKLRFAN  164 (372)
Q Consensus        91 ~l~v~~~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~-~gv~~~~-~~g--~~~l~~~~~~~~~~~~~  164 (372)
                      .+.+++.++.|.++.  .++...+.....-|...++++.+|+..++... .+|..++ .++  ..++. ...+    .+-
T Consensus        68 ~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lr-gh~a----pVl  142 (933)
T KOG1274|consen   68 HFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLR-GHDA----PVL  142 (933)
T ss_pred             ceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeec-ccCC----cee
Confidence            566666788888877  44443333222334437889989986666444 5677777 444  33332 2222    345


Q ss_pred             ceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccC---------cceEEEecCCCEEEE
Q 017371          165 DVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYF---------ANGVALSRDEDYVVV  235 (372)
Q Consensus       165 ~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~---------~~gi~~~~dg~~l~v  235 (372)
                      .|.++|+|++..+-+                 .+|.|+.+|.+++......+++..         -..++|+|++..+.+
T Consensus       143 ~l~~~p~~~fLAvss-----------------~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~  205 (933)
T KOG1274|consen  143 QLSYDPKGNFLAVSS-----------------CDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAV  205 (933)
T ss_pred             eeeEcCCCCEEEEEe-----------------cCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEe
Confidence            789999999877543                 689999999987766554444322         235789999776776


Q ss_pred             EeCCCCeEEEEEccCCCCcceeeeccC-CCCCCceeEEcCCCCEEEEE
Q 017371          236 CESWKFRCRKYWLKGERKGKLETFAEN-LPGAPDNINLAPDGTFWIAI  282 (372)
Q Consensus       236 ~~~~~~~i~~~~~~g~~~~~~~~~~~~-~~g~p~~i~~d~~G~lwva~  282 (372)
                      ... ++.|..|..++-....  .+.++ ....-..+..++.|.+..+.
T Consensus       206 ~~~-d~~Vkvy~r~~we~~f--~Lr~~~~ss~~~~~~wsPnG~YiAAs  250 (933)
T KOG1274|consen  206 PPV-DNTVKVYSRKGWELQF--KLRDKLSSSKFSDLQWSPNGKYIAAS  250 (933)
T ss_pred             ecc-CCeEEEEccCCceehe--eecccccccceEEEEEcCCCcEEeee
Confidence            654 5678888876532111  11111 11113446677887544443

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=97.47  E-value=0.00075  Score=49.64  Aligned_cols=61  Identities=11%  Similarity=0.164  Sum_probs=45.8

Q ss_pred             cEEEcCC-CcEEEEecC------------------CeEEEEe--CCceEEEEecCCCcccCeEEcCCCC-EEEEeCC-Cc
Q 017371           83 DASMDKN-GVIYTATRD------------------GWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA-NG  139 (372)
Q Consensus        83 ~i~~d~~-G~l~v~~~~------------------g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~-l~v~~~~-~g  139 (372)
                      +++++++ |.+|+++..                  |+++++|  +++.+.+......|+ |+++++|+. |+|++.. ..
T Consensus         2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpN-GVals~d~~~vlv~Et~~~R   80 (89)
T PF03088_consen    2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPN-GVALSPDESFVLVAETGRYR   80 (89)
T ss_dssp             EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEE-EEEE-TTSSEEEEEEGGGTE
T ss_pred             ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccC-eEEEcCCCCEEEEEeccCce
Confidence            5788887 999999732                  8999999  778888888888999 999999997 7788765 45


Q ss_pred             EEEEc
Q 017371          140 LHKVS  144 (372)
Q Consensus       140 v~~~~  144 (372)
                      |.++-
T Consensus        81 i~ryw   85 (89)
T PF03088_consen   81 ILRYW   85 (89)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            66654

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=97.47  E-value=0.0026  Score=62.86  Aligned_cols=78  Identities=15%  Similarity=0.182  Sum_probs=47.4

Q ss_pred             cccccccceEEccCCcEEEEeCCCCCCCc-----c--cccccccccCCCeEEEEeCCCCeEEEEeCCc--cCcceEEEec
Q 017371          158 SKLRFANDVVEASDGSLYFTVSSSKYLPH-----E--YCLDILEGKPHGQLLKYDPSSNITTLVADGF--YFANGVALSR  228 (372)
Q Consensus       158 ~~~~~~~~l~~d~dG~i~vtd~~~~~~~~-----~--~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~--~~~~gi~~~~  228 (372)
                      ..+..|..|++|++|+|||..........     .  ....+....+.. +...++.+++++.++..-  ....|++|+|
T Consensus       433 ~~f~sPDNL~~d~~G~LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~-~~~~~~~~g~~~rf~~~P~gaE~tG~~fsp  511 (524)
T PF05787_consen  433 NGFASPDNLAFDPDGNLWIQEDGGGSNNNLPGVTPDGEVYDFARNDGNN-VWAYDPDTGELKRFLVGPNGAEITGPCFSP  511 (524)
T ss_pred             CCcCCCCceEECCCCCEEEEeCCCCCCcccccccccCceeeeeecccce-eeeccccccceeeeccCCCCcccccceECC
Confidence            34678899999999999998654221100     0  000011111111 555677778877776442  2346899999


Q ss_pred             CCCEEEEE
Q 017371          229 DEDYVVVC  236 (372)
Q Consensus       229 dg~~l~v~  236 (372)
                      |+++||+.
T Consensus       512 Dg~tlFvn  519 (524)
T PF05787_consen  512 DGRTLFVN  519 (524)
T ss_pred             CCCEEEEE
Confidence            99998885

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=97.47  E-value=0.0043  Score=58.40  Aligned_cols=136  Identities=13%  Similarity=0.119  Sum_probs=89.0

Q ss_pred             EEEcCCCcEEEEecCC-eEEEEe--CCceEEEEecCCCcccCeEEcCCCC-EEEEeCCCcEEEEc-CCC-cEEEeeecCC
Q 017371           84 ASMDKNGVIYTATRDG-WIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNANGLHKVS-EDG-VENFLSYVNG  157 (372)
Q Consensus        84 i~~d~~G~l~v~~~~g-~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~-l~v~~~~~gv~~~~-~~g-~~~l~~~~~~  157 (372)
                      +..+++ .+.+|+.+| .|-.++  +|+.+.+....+... .+.++++|. +.+++....++.+| .+| ++.+-..-. 
T Consensus       367 ~~~~~e-~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~-av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~-  443 (668)
T COG4946         367 IQVDPE-GDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIE-AVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEY-  443 (668)
T ss_pred             EccCCc-ceEEeccCCceEEEEecCCceEEEeeCCccceE-EEEEcCCCcEEEEEcCceEEEEEEecCCCeeEeccccc-
Confidence            344445 466777666 677777  667788888888888 999999998 66666555688999 788 665533222 


Q ss_pred             cccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEe
Q 017371          158 SKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCE  237 (372)
Q Consensus       158 ~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~  237 (372)
                         ..+-++++.++++ |++-+.            .++--...|-.||.++++.-.+.+.-..--.-+|+||+++||+..
T Consensus       444 ---~lItdf~~~~nsr-~iAYaf------------P~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         444 ---GLITDFDWHPNSR-WIAYAF------------PEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             ---ceeEEEEEcCCce-eEEEec------------CcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence               2455778888876 554221            112123446667777666655544433334567999999999875


Q ss_pred             C
Q 017371          238 S  238 (372)
Q Consensus       238 ~  238 (372)
                      .
T Consensus       508 ~  508 (668)
T COG4946         508 A  508 (668)
T ss_pred             c
Confidence            4

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.47  E-value=0.051  Score=47.69  Aligned_cols=59  Identities=22%  Similarity=0.230  Sum_probs=40.0

Q ss_pred             CCcEEEEecCCeEEEEe-CCceEEEEecCC-CcccCeEEcC-CCCEEEEeCCCcEEEEc-CCC
Q 017371           89 NGVIYTATRDGWIKRLQ-DGTWVNWKFIDS-QTLVGLTSTK-EGHLIICDNANGLHKVS-EDG  147 (372)
Q Consensus        89 ~G~l~v~~~~g~i~~~~-~g~~~~~~~~~~-~p~~gl~~d~-dG~l~v~~~~~gv~~~~-~~g  147 (372)
                      .|-+|.|+.||..+.+| ...-..|...++ ....+-++++ ++.||++.....+..++ .++
T Consensus       105 ~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~  167 (354)
T KOG4649|consen  105 GGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPY  167 (354)
T ss_pred             CceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCC
Confidence            45889999999999998 433334443332 2222556776 88999998776688888 455

>PTZ00421 coronin; Provisional

Probab=97.47  E-value=0.13  Score=50.65  Aligned_cols=147  Identities=14%  Similarity=0.102  Sum_probs=88.0

Q ss_pred             CCccEEEcC-CCc-EEEEecCCeEEEEe--CCc--------eEEEEecCCCcccCeEEcCCC-CEEEEeC-CCcEEEEc-
Q 017371           80 HPEDASMDK-NGV-IYTATRDGWIKRLQ--DGT--------WVNWKFIDSQTLVGLTSTKEG-HLIICDN-ANGLHKVS-  144 (372)
Q Consensus        80 ~p~~i~~d~-~G~-l~v~~~~g~i~~~~--~g~--------~~~~~~~~~~p~~gl~~d~dG-~l~v~~~-~~gv~~~~-  144 (372)
                      ...++++.+ ++. |..++.||.|..|+  ++.        +..+........ .+++.|++ +++++.. +.-|..+| 
T Consensus        77 ~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~-~l~f~P~~~~iLaSgs~DgtVrIWDl  155 (493)
T PTZ00421         77 PIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVG-IVSFHPSAMNVLASAGADMVVNVWDV  155 (493)
T ss_pred             CEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEE-EEEeCcCCCCEEEEEeCCCEEEEEEC
Confidence            456788887 664 66667899999888  321        112221122344 78999875 5555433 34477777 


Q ss_pred             CCC--cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccC--
Q 017371          145 EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYF--  220 (372)
Q Consensus       145 ~~g--~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~--  220 (372)
                      .++  ...+.    +. ...+..+++.++|.+.++-.                 .++.|..+|+.+++..........  
T Consensus       156 ~tg~~~~~l~----~h-~~~V~sla~spdG~lLatgs-----------------~Dg~IrIwD~rsg~~v~tl~~H~~~~  213 (493)
T PTZ00421        156 ERGKAVEVIK----CH-SDQITSLEWNLDGSLLCTTS-----------------KDKKLNIIDPRDGTIVSSVEAHASAK  213 (493)
T ss_pred             CCCeEEEEEc----CC-CCceEEEEEECCCCEEEEec-----------------CCCEEEEEECCCCcEEEEEecCCCCc
Confidence            555  33221    11 12467899999998777633                 577899999987765433322221  


Q ss_pred             cceEEEecCCCEEEEEeC---CCCeEEEEEcc
Q 017371          221 ANGVALSRDEDYVVVCES---WKFRCRKYWLK  249 (372)
Q Consensus       221 ~~gi~~~~dg~~l~v~~~---~~~~i~~~~~~  249 (372)
                      ...+.+.++++.++.+..   ....|..+++.
T Consensus       214 ~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr  245 (493)
T PTZ00421        214 SQRCLWAKRKDLIITLGCSKSQQRQIMLWDTR  245 (493)
T ss_pred             ceEEEEcCCCCeEEEEecCCCCCCeEEEEeCC
Confidence            235667888776655432   23457777764

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.44  E-value=0.051  Score=50.93  Aligned_cols=162  Identities=15%  Similarity=0.170  Sum_probs=80.7

Q ss_pred             cCCC-cEEEE-e--cCCeEEEEe--CCceEEEEecCCC-cccCeEEcCCCC-EEEEeCCCcEEEEc-CCC-cEEEeeecC
Q 017371           87 DKNG-VIYTA-T--RDGWIKRLQ--DGTWVNWKFIDSQ-TLVGLTSTKEGH-LIICDNANGLHKVS-EDG-VENFLSYVN  156 (372)
Q Consensus        87 d~~G-~l~v~-~--~~g~i~~~~--~g~~~~~~~~~~~-p~~gl~~d~dG~-l~v~~~~~gv~~~~-~~g-~~~l~~~~~  156 (372)
                      .++| .|.++ +  .+.+++.+|  +++++++....+. .. |..+.++.+ +|..-..+.|.+++ .+. .+.+.....
T Consensus        44 t~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~-g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~  122 (386)
T PF14583_consen   44 TDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTF-GGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPD  122 (386)
T ss_dssp             -TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TT-T-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--T
T ss_pred             CCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCcc-ceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCc
Confidence            4566 44444 4  345688888  7888877664433 34 666665554 54444456799999 555 444433212


Q ss_pred             CcccccccceEEccCCcEEEEeCCCC--CC-Cc--ccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCC-
Q 017371          157 GSKLRFANDVVEASDGSLYFTVSSSK--YL-PH--EYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDE-  230 (372)
Q Consensus       157 ~~~~~~~~~l~~d~dG~i~vtd~~~~--~~-~~--~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg-  230 (372)
                      +  ...--....+.|++.++.....+  +. ..  ..+..+.+..+..+|+++|.+||+.+++...-..-+-+.++|.. 
T Consensus       123 ~--~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp  200 (386)
T PF14583_consen  123 D--WKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDP  200 (386)
T ss_dssp             T--EEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEE
T ss_pred             c--cccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCC
Confidence            1  11111233466787776543211  11 01  12345677788899999999999999987665555566777643 


Q ss_pred             CEEEEEeCC-----CCeEEEEEccCC
Q 017371          231 DYVVVCESW-----KFRCRKYWLKGE  251 (372)
Q Consensus       231 ~~l~v~~~~-----~~~i~~~~~~g~  251 (372)
                      ..+.+|.-+     ..|||.++.+|.
T Consensus       201 ~li~fCHEGpw~~Vd~RiW~i~~dg~  226 (386)
T PF14583_consen  201 TLIMFCHEGPWDLVDQRIWTINTDGS  226 (386)
T ss_dssp             EEEEEEE-S-TTTSS-SEEEEETTS-
T ss_pred             CEEEEeccCCcceeceEEEEEEcCCC
Confidence            334444432     248888887764

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=97.43  E-value=0.00026  Score=39.98  Aligned_cols=28  Identities=29%  Similarity=0.594  Sum_probs=24.4

Q ss_pred             ccCcceEEEecCCCEEEEEeCCCCeEEEE
Q 017371          218 FYFANGVALSRDEDYVVVCESWKFRCRKY  246 (372)
Q Consensus       218 ~~~~~gi~~~~dg~~l~v~~~~~~~i~~~  246 (372)
                      +..|.|++++++|+ +||+|+.+++|++|
T Consensus         1 f~~P~gvav~~~g~-i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    1 FNYPHGVAVDSDGN-IYVADSGNHRVQVF   28 (28)
T ss_dssp             BSSEEEEEEETTSE-EEEEECCCTEEEEE
T ss_pred             CcCCcEEEEeCCCC-EEEEECCCCEEEEC
Confidence            35799999997775 99999999999876

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=97.40  E-value=0.02  Score=53.74  Aligned_cols=182  Identities=12%  Similarity=0.122  Sum_probs=108.0

Q ss_pred             CccEEEcCCCc-EEEEecCCeEEEEe-CCceEEEE---ecCCCcccCeEEcCCCC-EEEEeCC-CcEEEEc-CCC-cEEE
Q 017371           81 PEDASMDKNGV-IYTATRDGWIKRLQ-DGTWVNWK---FIDSQTLVGLTSTKEGH-LIICDNA-NGLHKVS-EDG-VENF  151 (372)
Q Consensus        81 p~~i~~d~~G~-l~v~~~~g~i~~~~-~g~~~~~~---~~~~~p~~gl~~d~dG~-l~v~~~~-~gv~~~~-~~g-~~~l  151 (372)
                      -.++-+-+.-. |.++..+|.+..|. +|+.....   .-...|+-..+|.++|. ..++... .-++.+| ..+ ++.+
T Consensus       216 I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~  295 (514)
T KOG2055|consen  216 ITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKL  295 (514)
T ss_pred             ceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccc
Confidence            44566766553 45555777666666 66543322   22245654677888997 3333322 3366777 666 5554


Q ss_pred             eeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCC
Q 017371          152 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDED  231 (372)
Q Consensus       152 ~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~  231 (372)
                      .. ..|....+...+.+.+++++....                 ...|.|+.+...|++...-..--....+++|+.|++
T Consensus       296 ~~-~~g~e~~~~e~FeVShd~~fia~~-----------------G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk  357 (514)
T KOG2055|consen  296 KP-PYGVEEKSMERFEVSHDSNFIAIA-----------------GNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSK  357 (514)
T ss_pred             cC-CCCcccchhheeEecCCCCeEEEc-----------------ccCceEEeehhhhhhhhheeeeccEEeeEEEecCCc
Confidence            32 233334566778888999855432                 246778888777666432222222345788999999


Q ss_pred             EEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 017371          232 YVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       232 ~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~  284 (372)
                      .||++.. .+.|+.+++...  .-...|.+...-.-..++...+|. |+|+.+
T Consensus       358 ~l~~~~~-~GeV~v~nl~~~--~~~~rf~D~G~v~gts~~~S~ng~-ylA~GS  406 (514)
T KOG2055|consen  358 ELLASGG-TGEVYVWNLRQN--SCLHRFVDDGSVHGTSLCISLNGS-YLATGS  406 (514)
T ss_pred             EEEEEcC-CceEEEEecCCc--ceEEEEeecCccceeeeeecCCCc-eEEecc
Confidence            8888764 448999998754  333455544222234577778887 666654

>PRK01029 tolB translocation protein TolB; Provisional

Probab=97.38  E-value=0.16  Score=49.38  Aligned_cols=156  Identities=13%  Similarity=0.049  Sum_probs=79.7

Q ss_pred             eEEEEe-CC-ceEEEEecCCCcccCeEEcCCCC---E-EEEeCC--CcEEEEc-CCC-cEEEeeecCCcccccccceEEc
Q 017371          100 WIKRLQ-DG-TWVNWKFIDSQTLVGLTSTKEGH---L-IICDNA--NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEA  169 (372)
Q Consensus       100 ~i~~~~-~g-~~~~~~~~~~~p~~gl~~d~dG~---l-~v~~~~--~gv~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~d  169 (372)
                      .|+..+ +| +.+.+........ .-++.|||+   + |+....  ..|+..+ ..| .+.+.. .++.    ....++.
T Consensus       166 ~l~~~d~dG~~~~~lt~~~~~~~-sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~-~~g~----~~~p~wS  239 (428)
T PRK01029        166 ELWSVDYDGQNLRPLTQEHSLSI-TPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA-LQGN----QLMPTFS  239 (428)
T ss_pred             eEEEEcCCCCCceEcccCCCCcc-cceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeec-CCCC----ccceEEC
Confidence            566666 44 3444433222223 667899985   2 344322  2488888 555 444433 2332    1245788


Q ss_pred             cCC-cEEEEeCCCCCCCcccccccccccCCCeEEE--EeCCC---CeEEEEeCCc-cCcceEEEecCCCEEEEEeC--CC
Q 017371          170 SDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLK--YDPSS---NITTLVADGF-YFANGVALSRDEDYVVVCES--WK  240 (372)
Q Consensus       170 ~dG-~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~--~d~~t---~~~~~~~~~~-~~~~gi~~~~dg~~l~v~~~--~~  240 (372)
                      ||| +|.++-..               .+...++.  ++.++   ++.+.+.... ......+|+|||+.++++..  +.
T Consensus       240 PDG~~Laf~s~~---------------~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~  304 (428)
T PRK01029        240 PRKKLLAFISDR---------------YGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGR  304 (428)
T ss_pred             CCCCEEEEEECC---------------CCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCC
Confidence            999 45554211               01112443  44432   3444444332 23345789999998777653  33


Q ss_pred             CeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCE
Q 017371          241 FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTF  278 (372)
Q Consensus       241 ~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~l  278 (372)
                      .+|+.+++++.. +....+. ...+........+||+.
T Consensus       305 ~~ly~~~~~~~g-~~~~~lt-~~~~~~~~p~wSPDG~~  340 (428)
T PRK01029        305 PRIYIMQIDPEG-QSPRLLT-KKYRNSSCPAWSPDGKK  340 (428)
T ss_pred             ceEEEEECcccc-cceEEec-cCCCCccceeECCCCCE
Confidence            468888775321 1122222 11222345678888863

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=97.37  E-value=0.11  Score=47.60  Aligned_cols=177  Identities=18%  Similarity=0.219  Sum_probs=81.1

Q ss_pred             CCccEEEcCCCcEEEEecCCeEEEEe-CC-ceEEEEecCCCc----ccCeEEcCCCCEEEEeCCCcEEEEc-CCC--cEE
Q 017371           80 HPEDASMDKNGVIYTATRDGWIKRLQ-DG-TWVNWKFIDSQT----LVGLTSTKEGHLIICDNANGLHKVS-EDG--VEN  150 (372)
Q Consensus        80 ~p~~i~~d~~G~l~v~~~~g~i~~~~-~g-~~~~~~~~~~~p----~~gl~~d~dG~l~v~~~~~gv~~~~-~~g--~~~  150 (372)
                      ....|++..+.+-|+....|.|++-. .| .++........+    +..+.++ +.+.|++.. .|++... ..|  .+.
T Consensus        18 ~l~dV~F~d~~~G~~VG~~g~il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~-~~~g~ivG~-~g~ll~T~DgG~tW~~   95 (302)
T PF14870_consen   18 PLLDVAFVDPNHGWAVGAYGTILKTTDGGKTWQPVSLDLDNPFDYHLNSISFD-GNEGWIVGE-PGLLLHTTDGGKTWER   95 (302)
T ss_dssp             -EEEEEESSSS-EEEEETTTEEEEESSTTSS-EE-----S-----EEEEEEEE-TTEEEEEEE-TTEEEEESSTTSS-EE
T ss_pred             ceEEEEEecCCEEEEEecCCEEEEECCCCccccccccCCCccceeeEEEEEec-CCceEEEcC-CceEEEecCCCCCcEE
Confidence            44556676555666655667777766 33 355443222221    2256665 356787754 3554444 444  454


Q ss_pred             Eee--ecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCc-cCcceEEEe
Q 017371          151 FLS--YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF-YFANGVALS  227 (372)
Q Consensus       151 l~~--~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~-~~~~gi~~~  227 (372)
                      +..  ..++.    +..+....++.+++..                  ..|.||+=.-.....+.+..+. ..-+.+..+
T Consensus        96 v~l~~~lpgs----~~~i~~l~~~~~~l~~------------------~~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~  153 (302)
T PF14870_consen   96 VPLSSKLPGS----PFGITALGDGSAELAG------------------DRGAIYRTTDGGKTWQAVVSETSGSINDITRS  153 (302)
T ss_dssp             ----TT-SS-----EEEEEEEETTEEEEEE------------------TT--EEEESSTTSSEEEEE-S----EEEEEE-
T ss_pred             eecCCCCCCC----eeEEEEcCCCcEEEEc------------------CCCcEEEeCCCCCCeeEcccCCcceeEeEEEC
Confidence            432  23332    2344444555555532                  2466776654434555544332 223445667


Q ss_pred             cCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 017371          228 RDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       228 ~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~  284 (372)
                      +||+++.|+..  ..++.-+-.|...  .+.+.........+|.++++|++|+...+
T Consensus       154 ~dG~~vavs~~--G~~~~s~~~G~~~--w~~~~r~~~~riq~~gf~~~~~lw~~~~G  206 (302)
T PF14870_consen  154 SDGRYVAVSSR--GNFYSSWDPGQTT--WQPHNRNSSRRIQSMGFSPDGNLWMLARG  206 (302)
T ss_dssp             TTS-EEEEETT--SSEEEEE-TT-SS---EEEE--SSS-EEEEEE-TTS-EEEEETT
T ss_pred             CCCcEEEEECc--ccEEEEecCCCcc--ceEEccCccceehhceecCCCCEEEEeCC
Confidence            89986666654  3466555444321  22222222345678999999999998865

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=97.36  E-value=0.034  Score=52.92  Aligned_cols=145  Identities=12%  Similarity=0.088  Sum_probs=91.0

Q ss_pred             CCCccEEEcCCCcEEEEecCCeEEEEe-CCceEEEEecCC-CcccCeEEcCCCCEEEEeCCCcEEE-EcCCCcEEEeeec
Q 017371           79 NHPEDASMDKNGVIYTATRDGWIKRLQ-DGTWVNWKFIDS-QTLVGLTSTKEGHLIICDNANGLHK-VSEDGVENFLSYV  155 (372)
Q Consensus        79 ~~p~~i~~d~~G~l~v~~~~g~i~~~~-~g~~~~~~~~~~-~p~~gl~~d~dG~l~v~~~~~gv~~-~~~~g~~~l~~~~  155 (372)
                      -.++.|+... +.||+|+..+.|++=. .+.+.......+ .-+ |++..|+.++|++....+.++ ++...++ +....
T Consensus       330 G~iRtv~e~~-~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delw-gla~hps~~q~~T~gqdk~v~lW~~~k~~-wt~~~  406 (626)
T KOG2106|consen  330 GPIRTVAEGK-GDILVGTTRNFILQGTLENGFTLTVQGHGDELW-GLATHPSKNQLLTCGQDKHVRLWNDHKLE-WTKII  406 (626)
T ss_pred             CCeeEEecCC-CcEEEeeccceEEEeeecCCceEEEEeccccee-eEEcCCChhheeeccCcceEEEccCCcee-EEEEe
Confidence            3466666654 3499999777787766 444444333333 456 999999999998876655444 4422221 11111


Q ss_pred             CCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEE
Q 017371          156 NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVV  235 (372)
Q Consensus       156 ~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v  235 (372)
                      ..    .....+++|.|.+-+.                  ...|+.+.+|.++.....+...-..-+-+.++|||.++-+
T Consensus       407 ~d----~~~~~~fhpsg~va~G------------------t~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAv  464 (626)
T KOG2106|consen  407 ED----PAECADFHPSGVVAVG------------------TATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAV  464 (626)
T ss_pred             cC----ceeEeeccCcceEEEe------------------eccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEE
Confidence            11    2346788898966663                  3568899999887665555555333466889999997666


Q ss_pred             EeCCCCeEEEEEcc
Q 017371          236 CESWKFRCRKYWLK  249 (372)
Q Consensus       236 ~~~~~~~i~~~~~~  249 (372)
                      .. -++.|+.|.++
T Consensus       465 gs-~d~~iyiy~Vs  477 (626)
T KOG2106|consen  465 GS-HDNHIYIYRVS  477 (626)
T ss_pred             ec-CCCeEEEEEEC
Confidence            54 45667777665

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=97.34  E-value=0.014  Score=57.82  Aligned_cols=125  Identities=20%  Similarity=0.381  Sum_probs=72.8

Q ss_pred             CcccccccceEEccC-CcEEEEeCCCC-CCCccc-ccccccccCCCeEEEEeCCCC-------eEEEEe-----------
Q 017371          157 GSKLRFANDVVEASD-GSLYFTVSSSK-YLPHEY-CLDILEGKPHGQLLKYDPSSN-------ITTLVA-----------  215 (372)
Q Consensus       157 ~~~~~~~~~l~~d~d-G~i~vtd~~~~-~~~~~~-~~~~~~~~~~g~v~~~d~~t~-------~~~~~~-----------  215 (372)
                      ..++..+.++.+++. |++||+-+... ...... ..........|.|++++++.+       +++.+.           
T Consensus       346 AT~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~  425 (524)
T PF05787_consen  346 ATPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGN  425 (524)
T ss_pred             cccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCccccccc
Confidence            346788999999974 79999866422 100000 001123446789999998755       444432           


Q ss_pred             -------CCccCcceEEEecCCCEEEEEeCCCCeE------------EEE--------EccCCCCcceeeeccCC-CCCC
Q 017371          216 -------DGFYFANGVALSRDEDYVVVCESWKFRC------------RKY--------WLKGERKGKLETFAENL-PGAP  267 (372)
Q Consensus       216 -------~~~~~~~gi~~~~dg~~l~v~~~~~~~i------------~~~--------~~~g~~~~~~~~~~~~~-~g~p  267 (372)
                             ..+..|..|+++++|+ ||+++.....-            +.+        +..+...+....|.... ..-.
T Consensus       426 ~~~~~~~~~f~sPDNL~~d~~G~-LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~~~~~~~~~g~~~rf~~~P~gaE~  504 (524)
T PF05787_consen  426 GSNKCDDNGFASPDNLAFDPDGN-LWIQEDGGGSNNNLPGVTPDGEVYDFARNDGNNVWAYDPDTGELKRFLVGPNGAEI  504 (524)
T ss_pred             ccCcccCCCcCCCCceEECCCCC-EEEEeCCCCCCcccccccccCceeeeeecccceeeeccccccceeeeccCCCCccc
Confidence                   1256789999999998 88887655421            111        11122333444444221 1245


Q ss_pred             ceeEEcCCCC-EEEEE
Q 017371          268 DNINLAPDGT-FWIAI  282 (372)
Q Consensus       268 ~~i~~d~~G~-lwva~  282 (372)
                      .|+++++||+ |||.-
T Consensus       505 tG~~fspDg~tlFvni  520 (524)
T PF05787_consen  505 TGPCFSPDGRTLFVNI  520 (524)
T ss_pred             ccceECCCCCEEEEEE
Confidence            6789999995 66643

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.33  E-value=0.12  Score=47.04  Aligned_cols=106  Identities=16%  Similarity=0.093  Sum_probs=65.6

Q ss_pred             CCcccCeEEcCCCCEEEEeCC---CcEEEEc-CCC-cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccc
Q 017371          117 SQTLVGLTSTKEGHLIICDNA---NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLD  191 (372)
Q Consensus       117 ~~p~~gl~~d~dG~l~v~~~~---~gv~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~  191 (372)
                      .+.. +++..|+....|+-..   .-.+++| .+| ........++  -+|--.-++++||+..++..+           
T Consensus         5 ~RgH-~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~g--RHFyGHg~fs~dG~~LytTEn-----------   70 (305)
T PF07433_consen    5 ARGH-GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPG--RHFYGHGVFSPDGRLLYTTEN-----------   70 (305)
T ss_pred             cccc-ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCC--CEEecCEEEcCCCCEEEEecc-----------
Confidence            4556 8888885544444332   2377788 666 3322222222  244456789999976666442           


Q ss_pred             cccccCCCeEEEEeCCCCeEEE---EeCCccCcceEEEecCCCEEEEEeC
Q 017371          192 ILEGKPHGQLLKYDPSSNITTL---VADGFYFANGVALSRDEDYVVVCES  238 (372)
Q Consensus       192 ~~~~~~~g~v~~~d~~t~~~~~---~~~~~~~~~gi~~~~dg~~l~v~~~  238 (372)
                       ......|.|-.||.. ...+.   +.+.--.|.-+.+.+||+.|.|++-
T Consensus        71 -d~~~g~G~IgVyd~~-~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANG  118 (305)
T PF07433_consen   71 -DYETGRGVIGVYDAA-RGYRRIGEFPSHGIGPHELLLMPDGETLVVANG  118 (305)
T ss_pred             -ccCCCcEEEEEEECc-CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcC
Confidence             113367889999987 33333   3444556788999999998999864

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=97.31  E-value=0.03  Score=48.69  Aligned_cols=133  Identities=14%  Similarity=0.127  Sum_probs=81.3

Q ss_pred             CCcEEEEecCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCCEEEEeCCCcEEEEcCCCcEEEee-ecCCcccccccc
Q 017371           89 NGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDGVENFLS-YVNGSKLRFAND  165 (372)
Q Consensus        89 ~G~l~v~~~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~~~g~~~l~~-~~~~~~~~~~~~  165 (372)
                      |..+.-+..++.|..||  .|+...-...-..+. ++-+.+||++.....+.+|..++...+..+.. ..+-    .+..
T Consensus       155 D~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~Vt-SlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~----nV~S  229 (334)
T KOG0278|consen  155 DKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVT-SLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPC----NVES  229 (334)
T ss_pred             CceEEeeccCCceEEEEeccCcEEEEEecCCCCc-ceeeccCCCEEEEecCceeEEeccccccceeeccCcc----cccc
Confidence            33444444667777777  554333223223445 89999999988777677788888443333322 1111    1223


Q ss_pred             eEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEE-eCCccCcc-eEEEecCCCEEEEEeCCCCeE
Q 017371          166 VVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-ADGFYFAN-GVALSRDEDYVVVCESWKFRC  243 (372)
Q Consensus       166 l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~-~~~~~~~~-gi~~~~dg~~l~v~~~~~~~i  243 (372)
                      -...|+..+||+                 +.....+|+||-.||+-... ..+-..|. .+.|+|||. +|.+.+.++.|
T Consensus       230 ASL~P~k~~fVa-----------------Gged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE-~yAsGSEDGTi  291 (334)
T KOG0278|consen  230 ASLHPKKEFFVA-----------------GGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGE-LYASGSEDGTI  291 (334)
T ss_pred             ccccCCCceEEe-----------------cCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCc-eeeccCCCceE
Confidence            344577788886                 33567899999888764433 34544553 577999997 99888766544


Q ss_pred             E
Q 017371          244 R  244 (372)
Q Consensus       244 ~  244 (372)
                      .
T Consensus       292 r  292 (334)
T KOG0278|consen  292 R  292 (334)
T ss_pred             E
Confidence            3

>PRK13684 Ycf48-like protein; Provisional

Probab=97.31  E-value=0.14  Score=48.02  Aligned_cols=175  Identities=10%  Similarity=0.126  Sum_probs=86.7

Q ss_pred             cEEEcCCCcEEEEecCCeEEEEeC-C-ceEEEEe---cCCCcccCeEEcCCCCEEEEeCCCcEEEEcCCC--cEEEeeec
Q 017371           83 DASMDKNGVIYTATRDGWIKRLQD-G-TWVNWKF---IDSQTLVGLTSTKEGHLIICDNANGLHKVSEDG--VENFLSYV  155 (372)
Q Consensus        83 ~i~~d~~G~l~v~~~~g~i~~~~~-g-~~~~~~~---~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~~~g--~~~l~~~~  155 (372)
                      +++++. +..|++...|.|++-.| | .++.+..   ..+.+. .+....++.+|++.....+++-+..|  .+.+....
T Consensus        94 ~v~~~~-~~~~~~G~~g~i~~S~DgG~tW~~~~~~~~~~~~~~-~i~~~~~~~~~~~g~~G~i~~S~DgG~tW~~~~~~~  171 (334)
T PRK13684         94 SISFKG-DEGWIVGQPSLLLHTTDGGKNWTRIPLSEKLPGSPY-LITALGPGTAEMATNVGAIYRTTDGGKNWEALVEDA  171 (334)
T ss_pred             eeEEcC-CcEEEeCCCceEEEECCCCCCCeEccCCcCCCCCce-EEEEECCCcceeeeccceEEEECCCCCCceeCcCCC
Confidence            344442 34565555666777653 3 4555432   123455 44444445666665444466655445  44443322


Q ss_pred             CCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEE-eCCCCeEEEEeCC-ccCcceEEEecCCCEE
Q 017371          156 NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKY-DPSSNITTLVADG-FYFANGVALSRDEDYV  233 (372)
Q Consensus       156 ~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~-d~~t~~~~~~~~~-~~~~~gi~~~~dg~~l  233 (372)
                          ....+++.+.++|.+++..                  ..|.+++- |.....++.+... ....+++++.++++ +
T Consensus       172 ----~g~~~~i~~~~~g~~v~~g------------------~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~-~  228 (334)
T PRK13684        172 ----AGVVRNLRRSPDGKYVAVS------------------SRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGN-L  228 (334)
T ss_pred             ----cceEEEEEECCCCeEEEEe------------------CCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCC-E
Confidence                2345678888888666532                  34566665 3222234444322 23446788888887 5


Q ss_pred             EEEeCCCCeEEEE-EccCCCCcceeeeccCCC-CCCceeEEcCCCCEEEEEec
Q 017371          234 VVCESWKFRCRKY-WLKGERKGKLETFAENLP-GAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       234 ~v~~~~~~~i~~~-~~~g~~~~~~~~~~~~~~-g~p~~i~~d~~G~lwva~~~  284 (372)
                      |++...  ...++ ..++...-+......... -....+.+.+++++|++...
T Consensus       229 ~~vg~~--G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~  279 (334)
T PRK13684        229 WMLARG--GQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGN  279 (334)
T ss_pred             EEEecC--CEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEcCC
Confidence            555433  24444 233322111100000000 01345677888899997754

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.27  E-value=0.095  Score=46.71  Aligned_cols=251  Identities=15%  Similarity=0.124  Sum_probs=118.2

Q ss_pred             EcCCCcEEEEe--cCCeEEEEeCCceEEEEecCCCcccCeEEcCCCCEEEEeCC---CcEEEEcCCC---cEEEeeecCC
Q 017371           86 MDKNGVIYTAT--RDGWIKRLQDGTWVNWKFIDSQTLVGLTSTKEGHLIICDNA---NGLHKVSEDG---VENFLSYVNG  157 (372)
Q Consensus        86 ~d~~G~l~v~~--~~g~i~~~~~g~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~---~gv~~~~~~g---~~~l~~~~~~  157 (372)
                      .+.+|..++..  ..|++.        .-.....+.. ||+++|.-..-|+-..   .-.+.+|.++   ..++... .+
T Consensus        43 ~~~dgs~g~a~~~eaGk~v--------~~~~lpaR~H-gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~-~~  112 (366)
T COG3490          43 DARDGSFGAATLSEAGKIV--------FATALPARGH-GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQ-EG  112 (366)
T ss_pred             eccCCceeEEEEccCCcee--------eeeecccccC-CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecc-cC
Confidence            34577777665  344332        1111223445 7777765433332221   2255666544   2223221 22


Q ss_pred             cccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEE---eCCccCcceEEEecCCCEEE
Q 017371          158 SKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV---ADGFYFANGVALSRDEDYVV  234 (372)
Q Consensus       158 ~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~---~~~~~~~~gi~~~~dg~~l~  234 (372)
                       + ++--.-.+.+||.+.++...          ++  ....|-|-.||.. ..+..+   .+---.|.-+.+.+||+.+.
T Consensus       113 -R-HfyGHGvfs~dG~~LYATEn----------df--d~~rGViGvYd~r-~~fqrvgE~~t~GiGpHev~lm~DGrtlv  177 (366)
T COG3490         113 -R-HFYGHGVFSPDGRLLYATEN----------DF--DPNRGVIGVYDAR-EGFQRVGEFSTHGIGPHEVTLMADGRTLV  177 (366)
T ss_pred             -c-eeecccccCCCCcEEEeecC----------CC--CCCCceEEEEecc-cccceecccccCCcCcceeEEecCCcEEE
Confidence             1 33334568899976555432          11  1234555566654 233332   22334577789999999888


Q ss_pred             EEeCCCCeEEEE--------EccCCCCcceeeecc-------CCCCCC--------ceeEEcCCCCEEEEEe--cCchhH
Q 017371          235 VCESWKFRCRKY--------WLKGERKGKLETFAE-------NLPGAP--------DNINLAPDGTFWIAII--KLDARR  289 (372)
Q Consensus       235 v~~~~~~~i~~~--------~~~g~~~~~~~~~~~-------~~~g~p--------~~i~~d~~G~lwva~~--~~~~~~  289 (372)
                      +++-   .|...        +++.-+  ..-.+.+       ....+|        .-+.+|.||++|.++.  +.++..
T Consensus       178 vanG---GIethpdfgR~~lNldsMe--PSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~  252 (366)
T COG3490         178 VANG---GIETHPDFGRTELNLDSME--PSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDL  252 (366)
T ss_pred             EeCC---ceecccccCccccchhhcC--ccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccC
Confidence            7753   23322        111100  0001111       001123        3478899999999985  344443


Q ss_pred             HHHhhcchhHHHH-HHhcCcccc--------ccccCCCceEEEEECCCCcEEEEEECCCCCeec-----cceeeEEECCE
Q 017371          290 MKILNSSKLIKHV-LAAYPKLFS--------QFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMS-----FVTSGLQVDNH  355 (372)
Q Consensus       290 ~~~~~~~~~~r~~-~~~~p~~~~--------~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~-----~~t~~~~~~g~  355 (372)
                      -.++.....-+.+ ...+|+..+        -+-...+.+.|..-+|.|+....+....|....     .++.+....+-
T Consensus       253 ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~daaGva~~~~g  332 (366)
T COG3490         253 PPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPDAAGVAAAKGG  332 (366)
T ss_pred             CcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccccccccceeccCc
Confidence            3333221111111 111333221        111234456666667788877766665554322     34455555555


Q ss_pred             EEEEeCCCCeE
Q 017371          356 LYVISLTSNFI  366 (372)
Q Consensus       356 L~igs~~~~~i  366 (372)
                      .-+.|..+..+
T Consensus       333 f~vssg~G~~~  343 (366)
T COG3490         333 FAVSSGQGRII  343 (366)
T ss_pred             eEEecCCceEE
Confidence            55555554443

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=97.26  E-value=0.19  Score=47.78  Aligned_cols=79  Identities=19%  Similarity=0.256  Sum_probs=57.9

Q ss_pred             eEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEE
Q 017371          200 QLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFW  279 (372)
Q Consensus       200 ~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lw  279 (372)
                      .|-.||.++++++.+..++..--.+.+++||+++.+++. +..|+.+++++.+   ....-....++..++...+++ =|
T Consensus       383 ~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNd-r~el~vididngn---v~~idkS~~~lItdf~~~~ns-r~  457 (668)
T COG4946         383 KLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVAND-RFELWVIDIDNGN---VRLIDKSEYGLITDFDWHPNS-RW  457 (668)
T ss_pred             eEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcC-ceEEEEEEecCCC---eeEecccccceeEEEEEcCCc-ee
Confidence            677888888999998888888888999999998888774 6689999998643   222222344556667777766 46


Q ss_pred             EEEe
Q 017371          280 IAII  283 (372)
Q Consensus       280 va~~  283 (372)
                      +|-.
T Consensus       458 iAYa  461 (668)
T COG4946         458 IAYA  461 (668)
T ss_pred             EEEe
Confidence            6654

>PLN00181 protein SPA1-RELATED; Provisional

Probab=97.19  E-value=0.41  Score=50.44  Aligned_cols=176  Identities=11%  Similarity=0.069  Sum_probs=94.2

Q ss_pred             ccEEEcC-CC-cEEEEecCCeEEEEe--CCc-eEEEEecCCCcccCeEEcC-CCCEEEEeCCCc-EEEEc-CCC--cEEE
Q 017371           82 EDASMDK-NG-VIYTATRDGWIKRLQ--DGT-WVNWKFIDSQTLVGLTSTK-EGHLIICDNANG-LHKVS-EDG--VENF  151 (372)
Q Consensus        82 ~~i~~d~-~G-~l~v~~~~g~i~~~~--~g~-~~~~~~~~~~p~~gl~~d~-dG~l~v~~~~~g-v~~~~-~~g--~~~l  151 (372)
                      .++++.+ .+ .|..++.+|.|..|+  .++ ...+....+... ++++.+ ++.++++....| +..++ .++  ...+
T Consensus       536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~-~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~  614 (793)
T PLN00181        536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVW-SIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI  614 (793)
T ss_pred             eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEE-EEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE
Confidence            4566654 23 566666899999998  343 233322233455 899985 677766655444 66677 555  3333


Q ss_pred             eeecCCcccccccceEEc-cCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeE-EEEeCCc-cCcceEEEec
Q 017371          152 LSYVNGSKLRFANDVVEA-SDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT-TLVADGF-YFANGVALSR  228 (372)
Q Consensus       152 ~~~~~~~~~~~~~~l~~d-~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~-~~~~~~~-~~~~gi~~~~  228 (372)
                      ...      ..+..+.+. ++|+..++-                 ..++.|+.+|..+++. .....+. ..-..+.|. 
T Consensus       615 ~~~------~~v~~v~~~~~~g~~latg-----------------s~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-  670 (793)
T PLN00181        615 KTK------ANICCVQFPSESGRSLAFG-----------------SADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-  670 (793)
T ss_pred             ecC------CCeEEEEEeCCCCCEEEEE-----------------eCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-
Confidence            211      123455553 457665542                 2567899998765432 1112222 122456675 


Q ss_pred             CCCEEEEEeCCCCeEEEEEccCCCC----cceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 017371          229 DEDYVVVCESWKFRCRKYWLKGERK----GKLETFAENLPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       229 dg~~l~v~~~~~~~i~~~~~~g~~~----~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~  284 (372)
                      +++.+ ++.+.++.|..+++.....    .....+. ........+.++++|.+.++...
T Consensus       671 ~~~~l-vs~s~D~~ikiWd~~~~~~~~~~~~l~~~~-gh~~~i~~v~~s~~~~~lasgs~  728 (793)
T PLN00181        671 DSSTL-VSSSTDNTLKLWDLSMSISGINETPLHSFM-GHTNVKNFVGLSVSDGYIATGSE  728 (793)
T ss_pred             CCCEE-EEEECCCEEEEEeCCCCccccCCcceEEEc-CCCCCeeEEEEcCCCCEEEEEeC
Confidence            66644 4445566777777643210    1112222 12223456788888886665544

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=97.15  E-value=0.041  Score=47.17  Aligned_cols=139  Identities=14%  Similarity=0.129  Sum_probs=79.5

Q ss_pred             CCCcEEEEecCCeEEEEe--CCceEEEEecCC-CcccCeEEcCCCCEE-EEeC--CCcEEEEcCCC--cEEEeeecCCcc
Q 017371           88 KNGVIYTATRDGWIKRLQ--DGTWVNWKFIDS-QTLVGLTSTKEGHLI-ICDN--ANGLHKVSEDG--VENFLSYVNGSK  159 (372)
Q Consensus        88 ~~G~l~v~~~~g~i~~~~--~g~~~~~~~~~~-~p~~gl~~d~dG~l~-v~~~--~~gv~~~~~~g--~~~l~~~~~~~~  159 (372)
                      ..+.-|.+.  -.|++++  +.....+..... ... .+++.|+|+-+ |+..  ...+..++.++  +..+    ..  
T Consensus        30 ~~~ks~~~~--~~l~~~~~~~~~~~~i~l~~~~~I~-~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~----~~--  100 (194)
T PF08662_consen   30 KSGKSYYGE--FELFYLNEKNIPVESIELKKEGPIH-DVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSF----GT--  100 (194)
T ss_pred             cCcceEEee--EEEEEEecCCCccceeeccCCCceE-EEEECcCCCEEEEEEccCCcccEEEcCcccEeEee----cC--
Confidence            344445443  2477776  334444433222 345 99999999643 4432  23466666334  2222    11  


Q ss_pred             cccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCC
Q 017371          160 LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW  239 (372)
Q Consensus       160 ~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~  239 (372)
                       ...|.|.+.|+|++.+.-..              +...|.|..+|..+.+.... ........++|+|||+++..+.+.
T Consensus       101 -~~~n~i~wsP~G~~l~~~g~--------------~n~~G~l~~wd~~~~~~i~~-~~~~~~t~~~WsPdGr~~~ta~t~  164 (194)
T PF08662_consen  101 -QPRNTISWSPDGRFLVLAGF--------------GNLNGDLEFWDVRKKKKIST-FEHSDATDVEWSPDGRYLATATTS  164 (194)
T ss_pred             -CCceEEEECCCCCEEEEEEc--------------cCCCcEEEEEECCCCEEeec-cccCcEEEEEEcCCCCEEEEEEec
Confidence             24578999999987765221              12357788899874443222 223345788999999988887763


Q ss_pred             -----CCeEEEEEccCC
Q 017371          240 -----KFRCRKYWLKGE  251 (372)
Q Consensus       240 -----~~~i~~~~~~g~  251 (372)
                           ++.+..++..|.
T Consensus       165 ~r~~~dng~~Iw~~~G~  181 (194)
T PF08662_consen  165 PRLRVDNGFKIWSFQGR  181 (194)
T ss_pred             cceeccccEEEEEecCe
Confidence                 344455555553

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=97.14  E-value=0.0007  Score=38.20  Aligned_cols=26  Identities=27%  Similarity=0.525  Sum_probs=17.4

Q ss_pred             CCCccEEEcCCCcEEEEe-cCCeEEEE
Q 017371           79 NHPEDASMDKNGVIYTAT-RDGWIKRL  104 (372)
Q Consensus        79 ~~p~~i~~d~~G~l~v~~-~~g~i~~~  104 (372)
                      ..|.+|+++++|.||+++ .+++|.+|
T Consensus         2 ~~P~gvav~~~g~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    2 NYPHGVAVDSDGNIYVADSGNHRVQVF   28 (28)
T ss_dssp             SSEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred             cCCcEEEEeCCCCEEEEECCCCEEEEC
Confidence            467777777777777777 45555543

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=97.13  E-value=0.21  Score=45.90  Aligned_cols=123  Identities=12%  Similarity=0.189  Sum_probs=75.4

Q ss_pred             cccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCc------------cCcceEEEe--
Q 017371          162 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF------------YFANGVALS--  227 (372)
Q Consensus       162 ~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~------------~~~~gi~~~--  227 (372)
                      .+|+|..+++|.+.+|-                 +-...|+++|+++|++.+...+-            .......+.  
T Consensus       145 HiNsV~~~~~G~yLiS~-----------------R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~  207 (299)
T PF14269_consen  145 HINSVDKDDDGDYLISS-----------------RNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNE  207 (299)
T ss_pred             EeeeeeecCCccEEEEe-----------------cccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEecc
Confidence            56788888999988863                 24567999999999988876443            111122233  


Q ss_pred             --cCCCEEEEEeC----------CCCeEEEEEccCCCCcceeeeccC----CCCCCceeEEcCCCCEEEEEecCchhHHH
Q 017371          228 --RDEDYVVVCES----------WKFRCRKYWLKGERKGKLETFAEN----LPGAPDNINLAPDGTFWIAIIKLDARRMK  291 (372)
Q Consensus       228 --~dg~~l~v~~~----------~~~~i~~~~~~g~~~~~~~~~~~~----~~g~p~~i~~d~~G~lwva~~~~~~~~~~  291 (372)
                        .++. +-+.+.          .+.++..++...........+.+.    ......++..=++||+.|+...       
T Consensus       208 ~~~~~~-IslFDN~~~~~~~~~~s~~~v~~ld~~~~~~~~~~~~~~~~~~~~s~~~G~~Q~L~nGn~li~~g~-------  279 (299)
T PF14269_consen  208 SNDDGT-ISLFDNANSDFNGTEPSRGLVLELDPETMTVTLVREYSDHPDGFYSPSQGSAQRLPNGNVLIGWGN-------  279 (299)
T ss_pred             CCCCCE-EEEEcCCCCCCCCCcCCCceEEEEECCCCEEEEEEEeecCCCcccccCCCcceECCCCCEEEecCC-------
Confidence              3333 334333          345676777653322222222211    1112345666778999998877       


Q ss_pred             HhhcchhHHHHHHhcCccccccccCCCceEEEEECCCCcEEEEEE
Q 017371          292 ILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLV  336 (372)
Q Consensus       292 ~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~g~~~~~~~  336 (372)
                                                 .+.+.+++++|+++..++
T Consensus       280 ---------------------------~g~~~E~~~~G~vv~~~~  297 (299)
T PF14269_consen  280 ---------------------------NGRISEFTPDGEVVWEAQ  297 (299)
T ss_pred             ---------------------------CceEEEECCCCCEEEEEE
Confidence                                       679999999999987654

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=97.12  E-value=0.26  Score=46.81  Aligned_cols=108  Identities=16%  Similarity=0.237  Sum_probs=64.5

Q ss_pred             CCcEEEEecCCeEEEEe--CCceEEEEecCC--CcccCeEEcCCCCEEEEeCCCcEEEEc-CCCcEEEeeecCC-ccccc
Q 017371           89 NGVIYTATRDGWIKRLQ--DGTWVNWKFIDS--QTLVGLTSTKEGHLIICDNANGLHKVS-EDGVENFLSYVNG-SKLRF  162 (372)
Q Consensus        89 ~G~l~v~~~~g~i~~~~--~g~~~~~~~~~~--~p~~gl~~d~dG~l~v~~~~~gv~~~~-~~g~~~l~~~~~~-~~~~~  162 (372)
                      +|+||+++.+|.+++++  +|+........+  .-. +-.+-.++.+|+.....-++.++ .+|...+....+. .....
T Consensus       111 ~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~-~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~  189 (370)
T COG1520         111 DGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYA-SPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSI  189 (370)
T ss_pred             CCeEEEecccceEEEEECCCCcEEEEEecCCCeEEe-cCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCcccccc
Confidence            89999999999999999  566543333323  122 33444578888885334589999 5573332222111 11122


Q ss_pred             ccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEE
Q 017371          163 ANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV  214 (372)
Q Consensus       163 ~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~  214 (372)
                      ..... ..+|.+|++..+               . ++.++.+|+.+|+...-
T Consensus       190 ~~~~~-~~~~~vy~~~~~---------------~-~~~~~a~~~~~G~~~w~  224 (370)
T COG1520         190 YGSPA-IASGTVYVGSDG---------------Y-DGILYALNAEDGTLKWS  224 (370)
T ss_pred             ccCce-eecceEEEecCC---------------C-cceEEEEEccCCcEeee
Confidence            22222 578899996431               1 34788899877776653

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=97.12  E-value=0.059  Score=50.17  Aligned_cols=183  Identities=16%  Similarity=0.163  Sum_probs=102.7

Q ss_pred             CCCCCCccEEEcCC--C-cEEEEecCCeEEEEe-CCc--eEEEEecCCCcccCeEEcCCCCEEEEeCCC-cEEEEc-CCC
Q 017371           76 GSVNHPEDASMDKN--G-VIYTATRDGWIKRLQ-DGT--WVNWKFIDSQTLVGLTSTKEGHLIICDNAN-GLHKVS-EDG  147 (372)
Q Consensus        76 g~~~~p~~i~~d~~--G-~l~v~~~~g~i~~~~-~g~--~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~-gv~~~~-~~g  147 (372)
                      |......++.+-|.  + .|-.+..||.+.-|+ +++  +..+..-..+.. -++|.|+|+...+.... .-..+| .++
T Consensus       215 gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs-~VafHPsG~~L~TasfD~tWRlWD~~tk  293 (459)
T KOG0272|consen  215 GHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVS-RVAFHPSGKFLGTASFDSTWRLWDLETK  293 (459)
T ss_pred             ccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhhe-eeeecCCCceeeecccccchhhcccccc
Confidence            33344445555553  2 566666777777666 432  222222223445 78999999977765443 223344 333


Q ss_pred             cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCC-ccCcceEEE
Q 017371          148 VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVAL  226 (372)
Q Consensus       148 ~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~-~~~~~gi~~  226 (372)
                      .+.+..  +|- ...+.++++.+||.+..|-.               ....|+||  |..+|....+..+ ...--+++|
T Consensus       294 ~ElL~Q--EGH-s~~v~~iaf~~DGSL~~tGG---------------lD~~~RvW--DlRtgr~im~L~gH~k~I~~V~f  353 (459)
T KOG0272|consen  294 SELLLQ--EGH-SKGVFSIAFQPDGSLAATGG---------------LDSLGRVW--DLRTGRCIMFLAGHIKEILSVAF  353 (459)
T ss_pred             hhhHhh--ccc-ccccceeEecCCCceeeccC---------------ccchhhee--ecccCcEEEEecccccceeeEeE
Confidence            222211  221 24677999999999887622               22345666  4455666555555 344468999


Q ss_pred             ecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEe
Q 017371          227 SRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII  283 (372)
Q Consensus       227 ~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~  283 (372)
                      +|.| +.+.+.+.++.+..+++...+.  .-.. .........+.++++...++.+.
T Consensus       354 sPNG-y~lATgs~Dnt~kVWDLR~r~~--ly~i-pAH~nlVS~Vk~~p~~g~fL~Ta  406 (459)
T KOG0272|consen  354 SPNG-YHLATGSSDNTCKVWDLRMRSE--LYTI-PAHSNLVSQVKYSPQEGYFLVTA  406 (459)
T ss_pred             CCCc-eEEeecCCCCcEEEeeeccccc--ceec-ccccchhhheEecccCCeEEEEc
Confidence            9998 4777777777777777754321  1111 11223456788888544444443

>COG3211 PhoX Predicted phosphatase [General function prediction only]

Probab=97.05  E-value=0.048  Score=53.00  Aligned_cols=126  Identities=13%  Similarity=0.229  Sum_probs=79.8

Q ss_pred             CcccccccceEEccC-CcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCC-------eEEEEe--------CC---
Q 017371          157 GSKLRFANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN-------ITTLVA--------DG---  217 (372)
Q Consensus       157 ~~~~~~~~~l~~d~d-G~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~-------~~~~~~--------~~---  217 (372)
                      ..++-.|.+|++.+. |++|++.....-. .+......+....|+|+||-+.++       +++.+.        .+   
T Consensus       413 AT~mdRpE~i~~~p~~g~Vy~~lTNn~~r-~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~  491 (616)
T COG3211         413 ATPMDRPEWIAVNPGTGEVYFTLTNNGKR-SDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGAS  491 (616)
T ss_pred             CccccCccceeecCCcceEEEEeCCCCcc-ccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccc
Confidence            346678889999874 6899987642211 110111122335688999987765       444443        11   


Q ss_pred             -------ccCcceEEEecCCCEEEEEeCCCC--------eEEEEEccCCCCcceeeeccCCC-CCCceeEEcCCC-CEEE
Q 017371          218 -------FYFANGVALSRDEDYVVVCESWKF--------RCRKYWLKGERKGKLETFAENLP-GAPDNINLAPDG-TFWI  280 (372)
Q Consensus       218 -------~~~~~gi~~~~dg~~l~v~~~~~~--------~i~~~~~~g~~~~~~~~~~~~~~-g~p~~i~~d~~G-~lwv  280 (372)
                             +..|.+++|++.|+ ||++..+..        .+..+...+++.++...|..... .--.|.++.+|| .++|
T Consensus       492 ~~~~~~~f~~PDnl~fD~~Gr-LWi~TDg~~s~~~~~~~G~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~TlFV  570 (616)
T COG3211         492 ANINANWFNSPDNLAFDPWGR-LWIQTDGSGSTLRNRFRGVTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTLFV  570 (616)
T ss_pred             cCcccccccCCCceEECCCCC-EEEEecCCCCccCcccccccccccCCCccceeeeeccCCCcceeecceeCCCCceEEE
Confidence                   44589999999998 888765443        34444445666777777764432 235678999998 6888


Q ss_pred             EEec
Q 017371          281 AIIK  284 (372)
Q Consensus       281 a~~~  284 (372)
                      +-..
T Consensus       571 ~vQH  574 (616)
T COG3211         571 NVQH  574 (616)
T ss_pred             EecC
Confidence            8765

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=97.04  E-value=0.0031  Score=39.26  Aligned_cols=38  Identities=18%  Similarity=0.099  Sum_probs=33.8

Q ss_pred             EeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCC
Q 017371          214 VADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGE  251 (372)
Q Consensus       214 ~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~  251 (372)
                      +..++..|+|+++++.++.+||++.....|.+.+++|.
T Consensus         4 ~~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~   41 (43)
T smart00135        4 LSEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT   41 (43)
T ss_pred             EECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCC
Confidence            44577889999999999999999999999999998774

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=97.02  E-value=0.12  Score=49.36  Aligned_cols=197  Identities=14%  Similarity=0.168  Sum_probs=105.3

Q ss_pred             CCccEEEcCCC-cEEEEecCCeEEEEe-CC---c---eEEEEecCCCcccCeEEcCCCCEEEEeCC-CcEEEEcCCCcEE
Q 017371           80 HPEDASMDKNG-VIYTATRDGWIKRLQ-DG---T---WVNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVSEDGVEN  150 (372)
Q Consensus        80 ~p~~i~~d~~G-~l~v~~~~g~i~~~~-~g---~---~~~~~~~~~~p~~gl~~d~dG~l~v~~~~-~gv~~~~~~g~~~  150 (372)
                      -...+++|+.| +++.|..+-.|..|| .|   .   ++.+.+..+++...+.+.+.|+.+++-.+ .-...+|.+|.+.
T Consensus       169 ~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~  248 (641)
T KOG0772|consen  169 IVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEI  248 (641)
T ss_pred             EEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCcee
Confidence            34568999988 788888888899998 44   2   34444444555448888888865444344 3355566888333


Q ss_pred             EeeecCCcccccccc-------------eEEccCC-cEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeC
Q 017371          151 FLSYVNGSKLRFAND-------------VVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD  216 (372)
Q Consensus       151 l~~~~~~~~~~~~~~-------------l~~d~dG-~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~  216 (372)
                      ..-. .|.  .++.+             ..+.|+. ..++|-+               ..++-|||-++..-.+.+++..
T Consensus       249 ~e~~-KGD--QYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s---------------~DgtlRiWdv~~~k~q~qVik~  310 (641)
T KOG0772|consen  249 VEFS-KGD--QYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCS---------------YDGTLRIWDVNNTKSQLQVIKT  310 (641)
T ss_pred             eeee-ccc--hhhhhhhccCCceeeeeccccccCcccceEEec---------------CCCcEEEEecCCchhheeEEee
Confidence            2111 110  12222             2233332 2333321               1233455555433234444332


Q ss_pred             ----Ccc-CcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeec-c-CCCC-CCceeEEcCCCCEEEEEecC-ch
Q 017371          217 ----GFY-FANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFA-E-NLPG-APDNINLAPDGTFWIAIIKL-DA  287 (372)
Q Consensus       217 ----~~~-~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~-~-~~~g-~p~~i~~d~~G~lwva~~~~-~~  287 (372)
                          +.. .+...+|++||+ ++.+...++.|..++. +.......... + +.+| -...|.+..||++.++-... .-
T Consensus       311 k~~~g~Rv~~tsC~~nrdg~-~iAagc~DGSIQ~W~~-~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tL  388 (641)
T KOG0772|consen  311 KPAGGKRVPVTSCAWNRDGK-LIAAGCLDGSIQIWDK-GSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTL  388 (641)
T ss_pred             ccCCCcccCceeeecCCCcc-hhhhcccCCceeeeec-CCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCce
Confidence                222 244567999998 5777777777777665 32222222111 1 2222 35678899999988765432 22


Q ss_pred             hHHHHhhcc
Q 017371          288 RRMKILNSS  296 (372)
Q Consensus       288 ~~~~~~~~~  296 (372)
                      .+||+=+.+
T Consensus       389 KvWDLrq~k  397 (641)
T KOG0772|consen  389 KVWDLRQFK  397 (641)
T ss_pred             eeeeccccc
Confidence            455554433

>PLN00181 protein SPA1-RELATED; Provisional

Probab=97.01  E-value=0.61  Score=49.15  Aligned_cols=146  Identities=14%  Similarity=0.090  Sum_probs=82.4

Q ss_pred             CccEEEcCCCcEE-EEecCCeEEEEe-CCce---E-----EEE-ecCCCcccCeEEcCC-CCEEEEeCCCc-EEEEc-CC
Q 017371           81 PEDASMDKNGVIY-TATRDGWIKRLQ-DGTW---V-----NWK-FIDSQTLVGLTSTKE-GHLIICDNANG-LHKVS-ED  146 (372)
Q Consensus        81 p~~i~~d~~G~l~-v~~~~g~i~~~~-~g~~---~-----~~~-~~~~~p~~gl~~d~d-G~l~v~~~~~g-v~~~~-~~  146 (372)
                      ..+++++++|.+. ++..++.|..|+ ....   .     ... ....... ++++.+. ++..++....| +..+| .+
T Consensus       486 V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~-~l~~~~~~~~~las~~~Dg~v~lWd~~~  564 (793)
T PLN00181        486 VCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLS-GICWNSYIKSQVASSNFEGVVQVWDVAR  564 (793)
T ss_pred             EEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCcee-eEEeccCCCCEEEEEeCCCeEEEEECCC
Confidence            4568899998754 555889898887 3210   0     000 1112234 7777753 55444433334 55667 44


Q ss_pred             C--cEEEeeecCCcccccccceEEcc-CCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcce
Q 017371          147 G--VENFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANG  223 (372)
Q Consensus       147 g--~~~l~~~~~~~~~~~~~~l~~d~-dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~g  223 (372)
                      +  ...+    .+. ...+..+++.+ +|.++++-+                 .++.|..+|..+++.............
T Consensus       565 ~~~~~~~----~~H-~~~V~~l~~~p~~~~~L~Sgs-----------------~Dg~v~iWd~~~~~~~~~~~~~~~v~~  622 (793)
T PLN00181        565 SQLVTEM----KEH-EKRVWSIDYSSADPTLLASGS-----------------DDGSVKLWSINQGVSIGTIKTKANICC  622 (793)
T ss_pred             CeEEEEe----cCC-CCCEEEEEEcCCCCCEEEEEc-----------------CCCEEEEEECCCCcEEEEEecCCCeEE
Confidence            4  2222    111 13467888985 677777632                 467788888776654332222223345


Q ss_pred             EEEec-CCCEEEEEeCCCCeEEEEEccC
Q 017371          224 VALSR-DEDYVVVCESWKFRCRKYWLKG  250 (372)
Q Consensus       224 i~~~~-dg~~l~v~~~~~~~i~~~~~~g  250 (372)
                      +.+.+ ++. .+++.+.++.|..|++..
T Consensus       623 v~~~~~~g~-~latgs~dg~I~iwD~~~  649 (793)
T PLN00181        623 VQFPSESGR-SLAFGSADHKVYYYDLRN  649 (793)
T ss_pred             EEEeCCCCC-EEEEEeCCCeEEEEECCC
Confidence            66644 566 555556677898888754

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=97.01  E-value=0.17  Score=43.89  Aligned_cols=172  Identities=14%  Similarity=0.111  Sum_probs=96.8

Q ss_pred             cEEEcCCCcEEEEec-CCeEEEEe--CCc-eEEEEecCCCcccCeEEcCCCCEE-EEeCCCcEEEEc-CCC--cEEEeee
Q 017371           83 DASMDKNGVIYTATR-DGWIKRLQ--DGT-WVNWKFIDSQTLVGLTSTKEGHLI-ICDNANGLHKVS-EDG--VENFLSY  154 (372)
Q Consensus        83 ~i~~d~~G~l~v~~~-~g~i~~~~--~g~-~~~~~~~~~~p~~gl~~d~dG~l~-v~~~~~gv~~~~-~~g--~~~l~~~  154 (372)
                      .+-+.-+|+..++.. +-.|..|+  .|. ++++...+...+ ..+...|+.-+ -+..++.+..+| .+|  .+.+...
T Consensus        22 avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVl-D~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH  100 (307)
T KOG0316|consen   22 AVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVL-DAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGH  100 (307)
T ss_pred             EEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceee-eccccccccccccCCCCceEEEEEcccCeeeeecccc
Confidence            344556787666664 44444455  444 444444444445 66666666433 334446688899 777  4444221


Q ss_pred             cCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEE-EecCCCEE
Q 017371          155 VNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVA-LSRDEDYV  233 (372)
Q Consensus       155 ~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~-~~~dg~~l  233 (372)
                           ...+|.+.+..+..+.++-+                 -+..+..+|-.+..++.+..--.+..|+. ++-.+ +.
T Consensus       101 -----~aqVNtV~fNeesSVv~Sgs-----------------fD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~-he  157 (307)
T KOG0316|consen  101 -----LAQVNTVRFNEESSVVASGS-----------------FDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE-HE  157 (307)
T ss_pred             -----cceeeEEEecCcceEEEecc-----------------ccceeEEEEcccCCCCccchhhhhcCceeEEEecc-cE
Confidence                 23678899988888888633                 23445556655444444322222233332 23223 58


Q ss_pred             EEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEe
Q 017371          234 VVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII  283 (372)
Q Consensus       234 ~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~  283 (372)
                      +++.+.++++.+|++.-+.+     ..+...--...+.+.+||+.-++..
T Consensus       158 IvaGS~DGtvRtydiR~G~l-----~sDy~g~pit~vs~s~d~nc~La~~  202 (307)
T KOG0316|consen  158 IVAGSVDGTVRTYDIRKGTL-----SSDYFGHPITSVSFSKDGNCSLASS  202 (307)
T ss_pred             EEeeccCCcEEEEEeeccee-----ehhhcCCcceeEEecCCCCEEEEee
Confidence            88888889999999853221     1122211145688999998665554

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=96.94  E-value=0.097  Score=52.28  Aligned_cols=192  Identities=17%  Similarity=0.197  Sum_probs=107.9

Q ss_pred             cccCeEEcCCCCEEEEeCCCc-EEEEcCCCcEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccC
Q 017371          119 TLVGLTSTKEGHLIICDNANG-LHKVSEDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKP  197 (372)
Q Consensus       119 p~~gl~~d~dG~l~v~~~~~g-v~~~~~~g~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~  197 (372)
                      .+ |..|.|+.++.+..+..+ +..+.-+-...++.. .|. ..-+.++.|.|.|..+.| .+              +..
T Consensus       454 Vy-g~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y-~GH-~~PVwdV~F~P~GyYFat-as--------------~D~  515 (707)
T KOG0263|consen  454 VY-GCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIY-KGH-LAPVWDVQFAPRGYYFAT-AS--------------HDQ  515 (707)
T ss_pred             ee-eeeecccccceeeccCCcceeeeecccceeEEEe-cCC-CcceeeEEecCCceEEEe-cC--------------CCc
Confidence            35 899999999888765533 333331111111111 121 123467888888865544 32              446


Q ss_pred             CCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCC
Q 017371          198 HGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT  277 (372)
Q Consensus       198 ~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~  277 (372)
                      ..++|-.|-. .-.++++..+..-..+.|+|...++ .+.+.+..|..++...+  ..+..|. ...+-...+++.++|+
T Consensus       516 tArLWs~d~~-~PlRifaghlsDV~cv~FHPNs~Y~-aTGSsD~tVRlWDv~~G--~~VRiF~-GH~~~V~al~~Sp~Gr  590 (707)
T KOG0263|consen  516 TARLWSTDHN-KPLRIFAGHLSDVDCVSFHPNSNYV-ATGSSDRTVRLWDVSTG--NSVRIFT-GHKGPVTALAFSPCGR  590 (707)
T ss_pred             eeeeeecccC-CchhhhcccccccceEEECCccccc-ccCCCCceEEEEEcCCC--cEEEEec-CCCCceEEEEEcCCCc
Confidence            6788888752 4445555556666668899988633 34455555555555432  3355664 3444467789999996


Q ss_pred             EEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEEC-CCCcEEEEEECCCCCeeccceeeEEE-CCE
Q 017371          278 FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQV-DNH  355 (372)
Q Consensus       278 lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~  355 (372)
                      +.++...                                  .+.|.-.| +.|+.+..+....+    .+.++.+. +|.
T Consensus       591 ~LaSg~e----------------------------------d~~I~iWDl~~~~~v~~l~~Ht~----ti~SlsFS~dg~  632 (707)
T KOG0263|consen  591 YLASGDE----------------------------------DGLIKIWDLANGSLVKQLKGHTG----TIYSLSFSRDGN  632 (707)
T ss_pred             eEeeccc----------------------------------CCcEEEEEcCCCcchhhhhcccC----ceeEEEEecCCC
Confidence            6555444                                  23444444 34555544433333    35556654 555


Q ss_pred             EEEEeCCCCeEEEEeC
Q 017371          356 LYVISLTSNFIGKVQL  371 (372)
Q Consensus       356 L~igs~~~~~i~~~~~  371 (372)
                      +.+.+-..+.|..+|+
T Consensus       633 vLasgg~DnsV~lWD~  648 (707)
T KOG0263|consen  633 VLASGGADNSVRLWDL  648 (707)
T ss_pred             EEEecCCCCeEEEEEc
Confidence            5555556666666654

>PTZ00421 coronin; Provisional

Probab=96.90  E-value=0.51  Score=46.61  Aligned_cols=112  Identities=5%  Similarity=-0.005  Sum_probs=67.9

Q ss_pred             CcccCeEEcC-CCCEEEEeCC-CcEEEEc-CCC-c-E----EEeeecCCcccccccceEEccCC-cEEEEeCCCCCCCcc
Q 017371          118 QTLVGLTSTK-EGHLIICDNA-NGLHKVS-EDG-V-E----NFLSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHE  187 (372)
Q Consensus       118 ~p~~gl~~d~-dG~l~v~~~~-~gv~~~~-~~g-~-~----~l~~~~~~~~~~~~~~l~~d~dG-~i~vtd~~~~~~~~~  187 (372)
                      ... ++++.| +++++++... ..|..++ +++ . .    .+. ...+. ...+..+++.+++ ++.++-         
T Consensus        77 ~V~-~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~-~L~gH-~~~V~~l~f~P~~~~iLaSg---------  144 (493)
T PTZ00421         77 PII-DVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIV-HLQGH-TKKVGIVSFHPSAMNVLASA---------  144 (493)
T ss_pred             CEE-EEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceE-EecCC-CCcEEEEEeCcCCCCEEEEE---------
Confidence            345 899998 7776655444 4466666 433 2 1    111 11221 1345678888875 565542         


Q ss_pred             cccccccccCCCeEEEEeCCCCeEEEEeCC-ccCcceEEEecCCCEEEEEeCCCCeEEEEEccC
Q 017371          188 YCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSRDEDYVVVCESWKFRCRKYWLKG  250 (372)
Q Consensus       188 ~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~-~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g  250 (372)
                              ..++.|..+|..+++....... ...-..++|++||+ ++++.+.+..|..|++..
T Consensus       145 --------s~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~-lLatgs~Dg~IrIwD~rs  199 (493)
T PTZ00421        145 --------GADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGS-LLCTTSKDKKLNIIDPRD  199 (493)
T ss_pred             --------eCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCC-EEEEecCCCEEEEEECCC
Confidence                    2467788889887765444433 22346789999998 555555677788888764

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=96.90  E-value=0.037  Score=48.15  Aligned_cols=131  Identities=11%  Similarity=0.130  Sum_probs=80.2

Q ss_pred             CCCCEEEEeCCCcEEEEc-CCC--cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEE
Q 017371          127 KEGHLIICDNANGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLK  203 (372)
Q Consensus       127 ~dG~l~v~~~~~gv~~~~-~~g--~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~  203 (372)
                      .|..+.-+...+.|..+| .+|  ++.|...      ..+..+-+.+||+|.....                  .+.|..
T Consensus       154 eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~------s~VtSlEvs~dG~ilTia~------------------gssV~F  209 (334)
T KOG0278|consen  154 EDKCILSSADDKTVRLWDHRTGTEVQSLEFN------SPVTSLEVSQDGRILTIAY------------------GSSVKF  209 (334)
T ss_pred             cCceEEeeccCCceEEEEeccCcEEEEEecC------CCCcceeeccCCCEEEEec------------------CceeEE
Confidence            444455443346688888 777  4433221      3456788899998766422                  235666


Q ss_pred             EeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEe
Q 017371          204 YDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII  283 (372)
Q Consensus       204 ~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~  283 (372)
                      .|+++-....-.+--..-+.-.++|+. .+||+.-....+++|+.++..  +.+.+....+|-...+.+.++|.+|.+..
T Consensus       210 wdaksf~~lKs~k~P~nV~SASL~P~k-~~fVaGged~~~~kfDy~Tge--Ei~~~nkgh~gpVhcVrFSPdGE~yAsGS  286 (334)
T KOG0278|consen  210 WDAKSFGLLKSYKMPCNVESASLHPKK-EFFVAGGEDFKVYKFDYNTGE--EIGSYNKGHFGPVHCVRFSPDGELYASGS  286 (334)
T ss_pred             eccccccceeeccCccccccccccCCC-ceEEecCcceEEEEEeccCCc--eeeecccCCCCceEEEEECCCCceeeccC
Confidence            777542221111111122344578887 499998888899999987542  22334344556567889999999998765


Q ss_pred             c
Q 017371          284 K  284 (372)
Q Consensus       284 ~  284 (372)
                      .
T Consensus       287 E  287 (334)
T KOG0278|consen  287 E  287 (334)
T ss_pred             C
Confidence            4

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=96.85  E-value=0.069  Score=49.83  Aligned_cols=111  Identities=15%  Similarity=0.167  Sum_probs=65.9

Q ss_pred             cccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEE-EE--eCCc-------------cCcceEE
Q 017371          162 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT-LV--ADGF-------------YFANGVA  225 (372)
Q Consensus       162 ~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~-~~--~~~~-------------~~~~gi~  225 (372)
                      -+.+|++.++|.+|+++...           .......+|++++.+ |++. .+  ...+             ....+++
T Consensus        86 D~Egi~~~~~g~~~is~E~~-----------~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la  153 (326)
T PF13449_consen   86 DPEGIAVPPDGSFWISSEGG-----------RTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLA  153 (326)
T ss_pred             ChhHeEEecCCCEEEEeCCc-----------cCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEE
Confidence            56689998999999997631           001113689999987 5542 22  1111             1123789


Q ss_pred             EecCCCEEEEEeCCC---------------CeEEEEEccCCC--CcceeeeccC-----CCCCCceeEEcCCCCEEEEEe
Q 017371          226 LSRDEDYVVVCESWK---------------FRCRKYWLKGER--KGKLETFAEN-----LPGAPDNINLAPDGTFWIAII  283 (372)
Q Consensus       226 ~~~dg~~l~v~~~~~---------------~~i~~~~~~g~~--~~~~~~~~~~-----~~g~p~~i~~d~~G~lwva~~  283 (372)
                      +++||+.||++.-..               -||++|+.....  ..+..-..+.     ....+..+..-++|+++|-..
T Consensus       154 ~~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER  233 (326)
T PF13449_consen  154 VSPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLER  233 (326)
T ss_pred             ECCCCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEc
Confidence            999999888764322               367788775421  1111111111     112355677888899999887


Q ss_pred             c
Q 017371          284 K  284 (372)
Q Consensus       284 ~  284 (372)
                      .
T Consensus       234 ~  234 (326)
T PF13449_consen  234 D  234 (326)
T ss_pred             c
Confidence            6

>PTZ00420 coronin; Provisional

Probab=96.84  E-value=0.62  Score=46.67  Aligned_cols=147  Identities=11%  Similarity=-0.005  Sum_probs=85.6

Q ss_pred             CCCccEEEcCC-C-cEEEEecCCeEEEEe--CC-c-eE-------EEEecCCCcccCeEEcCCCCEE-EE-eCCCcEEEE
Q 017371           79 NHPEDASMDKN-G-VIYTATRDGWIKRLQ--DG-T-WV-------NWKFIDSQTLVGLTSTKEGHLI-IC-DNANGLHKV  143 (372)
Q Consensus        79 ~~p~~i~~d~~-G-~l~v~~~~g~i~~~~--~g-~-~~-------~~~~~~~~p~~gl~~d~dG~l~-v~-~~~~gv~~~  143 (372)
                      ....++++.++ + .|..++.+|.|..|+  .+ . ..       .+........ .+++.|++..+ ++ ..+..+..+
T Consensus        75 ~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~-sVaf~P~g~~iLaSgS~DgtIrIW  153 (568)
T PTZ00420         75 SSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS-IIDWNPMNYYIMCSSGFDSFVNIW  153 (568)
T ss_pred             CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE-EEEECCCCCeEEEEEeCCCeEEEE
Confidence            45667888875 4 455666899999888  33 1 11       1111123345 88999988643 33 333457777


Q ss_pred             c-CCC--cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccC
Q 017371          144 S-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYF  220 (372)
Q Consensus       144 ~-~~g--~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~  220 (372)
                      | .++  ...+.  ..    ..+..++++++|++.++..                 .++.|..+|+.+++......+...
T Consensus       154 Dl~tg~~~~~i~--~~----~~V~SlswspdG~lLat~s-----------------~D~~IrIwD~Rsg~~i~tl~gH~g  210 (568)
T PTZ00420        154 DIENEKRAFQIN--MP----KKLSSLKWNIKGNLLSGTC-----------------VGKHMHIIDPRKQEIASSFHIHDG  210 (568)
T ss_pred             ECCCCcEEEEEe--cC----CcEEEEEECCCCCEEEEEe-----------------cCCEEEEEECCCCcEEEEEecccC
Confidence            7 555  22221  11    2467899999999887632                 456789999987765433322221


Q ss_pred             cc-eE-----EEecCCCEEEEEeCCC---CeEEEEEcc
Q 017371          221 AN-GV-----ALSRDEDYVVVCESWK---FRCRKYWLK  249 (372)
Q Consensus       221 ~~-gi-----~~~~dg~~l~v~~~~~---~~i~~~~~~  249 (372)
                      .. ..     .++++++++..+...+   ..|..+++.
T Consensus       211 ~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr  248 (568)
T PTZ00420        211 GKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLK  248 (568)
T ss_pred             CceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECC
Confidence            11 11     2347877666655433   247777765

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=96.84  E-value=0.41  Score=45.16  Aligned_cols=147  Identities=14%  Similarity=0.176  Sum_probs=73.4

Q ss_pred             EEEcC---CCcEEEEe-cCCeEEEEe-CCceEEEEecCCCcc-----cCeEEcCCCC---EEEEeCC----C--cEEEEc
Q 017371           84 ASMDK---NGVIYTAT-RDGWIKRLQ-DGTWVNWKFIDSQTL-----VGLTSTKEGH---LIICDNA----N--GLHKVS  144 (372)
Q Consensus        84 i~~d~---~G~l~v~~-~~g~i~~~~-~g~~~~~~~~~~~p~-----~gl~~d~dG~---l~v~~~~----~--gv~~~~  144 (372)
                      |++++   ...+++++ .++.++.|+ +|+...... .++++     .|+.+  .|+   |.++...    .  .+++++
T Consensus        59 IWvnp~dp~kSlIigTdK~~GL~VYdL~Gk~lq~~~-~Gr~NNVDvrygf~l--~g~~vDlavas~R~~g~n~l~~f~id  135 (381)
T PF02333_consen   59 IWVNPADPAKSLIIGTDKKGGLYVYDLDGKELQSLP-VGRPNNVDVRYGFPL--NGKTVDLAVASDRSDGRNSLRLFRID  135 (381)
T ss_dssp             EE--SS-GGG-EEEEEETTTEEEEEETTS-EEEEE--SS-EEEEEEEEEEEE--TTEEEEEEEEEE-CCCT-EEEEEEEE
T ss_pred             EecCCCCcccceEEEEeCCCCEEEEcCCCcEEEeec-CCCcceeeeecceec--CCceEEEEEEecCcCCCCeEEEEEec
Confidence            55553   44677776 677899999 776544332 34443     03333  232   4444321    1  367777


Q ss_pred             -CCC-cEEEeeec-C-CcccccccceEEc---cCCcEEEEeCCCCCCCcccccccccccCCCeE--EEEe-CCCCeEE--
Q 017371          145 -EDG-VENFLSYV-N-GSKLRFANDVVEA---SDGSLYFTVSSSKYLPHEYCLDILEGKPHGQL--LKYD-PSSNITT--  212 (372)
Q Consensus       145 -~~g-~~~l~~~~-~-~~~~~~~~~l~~d---~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v--~~~d-~~t~~~~--  212 (372)
                       .+| ++.+.... + ...+..+.+++.-   .+|.+|+....                ..|.+  |++. ...+.+.  
T Consensus       136 ~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~----------------k~G~~~Qy~L~~~~~g~v~~~  199 (381)
T PF02333_consen  136 PDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNG----------------KDGRVEQYELTDDGDGKVSAT  199 (381)
T ss_dssp             TTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEE----------------TTSEEEEEEEEE-TTSSEEEE
T ss_pred             CCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEec----------------CCceEEEEEEEeCCCCcEeeE
Confidence             456 55443210 0 1122346677763   35777774321                33444  3332 2233221  


Q ss_pred             --EEeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccC
Q 017371          213 --LVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKG  250 (372)
Q Consensus       213 --~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g  250 (372)
                        .-+.....+.|++++....+||+++- +..||+|..+.
T Consensus       200 lVR~f~~~sQ~EGCVVDDe~g~LYvgEE-~~GIW~y~Aep  238 (381)
T PF02333_consen  200 LVREFKVGSQPEGCVVDDETGRLYVGEE-DVGIWRYDAEP  238 (381)
T ss_dssp             EEEEEE-SS-EEEEEEETTTTEEEEEET-TTEEEEEESSC
T ss_pred             EEEEecCCCcceEEEEecccCCEEEecC-ccEEEEEecCC
Confidence              11233456789999999889999996 46899999864

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PRK02888 nitrous-oxide reductase; Validated

Probab=96.72  E-value=0.5  Score=47.23  Aligned_cols=22  Identities=41%  Similarity=0.804  Sum_probs=15.9

Q ss_pred             CCCCCceeEEcCCCCEEEEEec
Q 017371          263 LPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       263 ~~g~p~~i~~d~~G~lwva~~~  284 (372)
                      .+..|.|+.+++||...+....
T Consensus       319 VGKsPHGV~vSPDGkylyVank  340 (635)
T PRK02888        319 VPKNPHGVNTSPDGKYFIANGK  340 (635)
T ss_pred             CCCCccceEECCCCCEEEEeCC
Confidence            3446999999999975555443

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=96.72  E-value=0.1  Score=48.18  Aligned_cols=188  Identities=18%  Similarity=0.173  Sum_probs=107.4

Q ss_pred             ceEecCCCCCCCccEEEcCCCcEEEEecCCeEEEEe--CCceEEEEecC-CCcccCe-----------EEcC--------
Q 017371           70 FIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQ--DGTWVNWKFID-SQTLVGL-----------TSTK--------  127 (372)
Q Consensus        70 ~~~~~~g~~~~p~~i~~d~~G~l~v~~~~g~i~~~~--~g~~~~~~~~~-~~p~~gl-----------~~d~--------  127 (372)
                      ......|......++....+|.||.++.|++|..|+  +|......... ...+ .|           +|++        
T Consensus       239 ~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN-~lalsTdy~LRtgaf~~t~~~~~~~  317 (480)
T KOG0271|consen  239 CVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVN-HLALSTDYVLRTGAFDHTGRKPKSF  317 (480)
T ss_pred             EEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchhee-eeeccchhhhhccccccccccCCCh
Confidence            344445655667788888899999999999998888  65422110000 0000 11           1122        


Q ss_pred             -----------------CCCEEEEeCC-CcEEEEcCCC-cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCccc
Q 017371          128 -----------------EGHLIICDNA-NGLHKVSEDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEY  188 (372)
Q Consensus       128 -----------------dG~l~v~~~~-~gv~~~~~~g-~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~  188 (372)
                                       .|+-.|+..+ ..++.+++.. .+.+... .| -...+|.+.+.|||++..+-+         
T Consensus       318 se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rm-tg-Hq~lVn~V~fSPd~r~IASaS---------  386 (480)
T KOG0271|consen  318 SEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRM-TG-HQALVNHVSFSPDGRYIASAS---------  386 (480)
T ss_pred             HHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhh-hc-hhhheeeEEECCCccEEEEee---------
Confidence                             2233444333 3466666322 2111111 11 124678999999998665533         


Q ss_pred             ccccccccCCCeEEEEeCCCCeEEEEeCCc-cCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCC
Q 017371          189 CLDILEGKPHGQLLKYDPSSNITTLVADGF-YFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAP  267 (372)
Q Consensus       189 ~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~-~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p  267 (372)
                              .+..|-..|..+|++-..+.+. ..-.-++++.|.+ |+|+.+.+..+..+++...++      ...+||.-
T Consensus       387 --------FDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsR-LlVS~SkDsTLKvw~V~tkKl------~~DLpGh~  451 (480)
T KOG0271|consen  387 --------FDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSR-LLVSGSKDSTLKVWDVRTKKL------KQDLPGHA  451 (480)
T ss_pred             --------cccceeeeeCCCcchhhhhhhccceeEEEEeccCcc-EEEEcCCCceEEEEEeeeeee------cccCCCCC
Confidence                    3445666677778764444432 2335689999987 999988888888888754332      22466654


Q ss_pred             cee---EEcCCCCEEEEEec
Q 017371          268 DNI---NLAPDGTFWIAIIK  284 (372)
Q Consensus       268 ~~i---~~d~~G~lwva~~~  284 (372)
                      |.+   -..+||..-++...
T Consensus       452 DEVf~vDwspDG~rV~sggk  471 (480)
T KOG0271|consen  452 DEVFAVDWSPDGQRVASGGK  471 (480)
T ss_pred             ceEEEEEecCCCceeecCCC
Confidence            543   23578876665544

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=96.69  E-value=0.41  Score=42.48  Aligned_cols=179  Identities=9%  Similarity=0.102  Sum_probs=105.2

Q ss_pred             CCccEEEcCCCcEEEEe-cCCeEEEEe--CCce-EEEEecCCCcccCeEEcCCCCEEEEeCC-CcEEEEc-CCC-cEEEe
Q 017371           80 HPEDASMDKNGVIYTAT-RDGWIKRLQ--DGTW-VNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG-VENFL  152 (372)
Q Consensus        80 ~p~~i~~d~~G~l~v~~-~~g~i~~~~--~g~~-~~~~~~~~~p~~gl~~d~dG~l~v~~~~-~gv~~~~-~~g-~~~l~  152 (372)
                      .-+.++..++|+..++- .|+.+..+|  .|+. +.+.......+ ++++++|.+-.|+... +-+..++ ..+ .-.+.
T Consensus        65 ~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVl-sva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~  143 (315)
T KOG0279|consen   65 FVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVL-SVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIH  143 (315)
T ss_pred             EecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceE-EEEecCCCceeecCCCcceeeeeeecccEEEEEe
Confidence            35567788899776654 899888888  5543 33444444566 9999999987776544 4466666 222 22221


Q ss_pred             eecCCcccccccceEEccCC-cEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCC-ccCcceEEEecCC
Q 017371          153 SYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSRDE  230 (372)
Q Consensus       153 ~~~~~~~~~~~~~l~~d~dG-~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~-~~~~~gi~~~~dg  230 (372)
                      ..  +. -.-++.+.+.|+. +.++...                ..+..|-..|.++.+.+...-+ -..-|.++++|||
T Consensus       144 ~~--~~-~~WVscvrfsP~~~~p~Ivs~----------------s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDG  204 (315)
T KOG0279|consen  144 ED--SH-REWVSCVRFSPNESNPIIVSA----------------SWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDG  204 (315)
T ss_pred             cC--CC-cCcEEEEEEcCCCCCcEEEEc----------------cCCceEEEEccCCcchhhccccccccEEEEEECCCC
Confidence            11  11 2356677888764 4444322                2556677778776655443222 3345779999999


Q ss_pred             CEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 017371          231 DYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       231 ~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~  284 (372)
                      . +..+.-.+..+.-++++..+.  ...+-  ..-....+++.|+ ++|++...
T Consensus       205 s-lcasGgkdg~~~LwdL~~~k~--lysl~--a~~~v~sl~fspn-rywL~~at  252 (315)
T KOG0279|consen  205 S-LCASGGKDGEAMLWDLNEGKN--LYSLE--AFDIVNSLCFSPN-RYWLCAAT  252 (315)
T ss_pred             C-EEecCCCCceEEEEEccCCce--eEecc--CCCeEeeEEecCC-ceeEeecc
Confidence            7 766655556677777764321  11111  1112456777765 57777653

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=96.67  E-value=0.48  Score=45.31  Aligned_cols=137  Identities=11%  Similarity=0.048  Sum_probs=71.4

Q ss_pred             CeEEcCCCCEEEEeCCCcEEEEcCCC-c--EEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCC
Q 017371          122 GLTSTKEGHLIICDNANGLHKVSEDG-V--ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPH  198 (372)
Q Consensus       122 gl~~d~dG~l~v~~~~~gv~~~~~~g-~--~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~  198 (372)
                      ++...+||.+++......+++-..+| .  +.+....    .....++.+.++|.+|+..                  ..
T Consensus       243 ~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~----~~~l~~v~~~~dg~l~l~g------------------~~  300 (398)
T PLN00033        243 TVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRAS----ARRIQNMGWRADGGLWLLT------------------RG  300 (398)
T ss_pred             eEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCC----ccceeeeeEcCCCCEEEEe------------------CC
Confidence            44566788777765433344444555 2  3332211    2345678888999999863                  34


Q ss_pred             CeEEEEeCCCCe------EEEEeC--CccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCcee
Q 017371          199 GQLLKYDPSSNI------TTLVAD--GFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNI  270 (372)
Q Consensus       199 g~v~~~d~~t~~------~~~~~~--~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i  270 (372)
                      |.+++-+.+ ++      +.....  .......+.+..|+. +|++...  .+.....++.+.-+.....+..++--.++
T Consensus       301 G~l~~S~d~-G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~-~~a~G~~--G~v~~s~D~G~tW~~~~~~~~~~~~ly~v  376 (398)
T PLN00033        301 GGLYVSKGT-GLTEEDFDFEEADIKSRGFGILDVGYRSKKE-AWAAGGS--GILLRSTDGGKSWKRDKGADNIAANLYSV  376 (398)
T ss_pred             ceEEEecCC-CCcccccceeecccCCCCcceEEEEEcCCCc-EEEEECC--CcEEEeCCCCcceeEccccCCCCcceeEE
Confidence            666665433 32      222111  111234566776765 7766533  34445555544322211112222223467


Q ss_pred             EEcCCCCEEEEEec
Q 017371          271 NLAPDGTFWIAIIK  284 (372)
Q Consensus       271 ~~d~~G~lwva~~~  284 (372)
                      .+..+++.|+....
T Consensus       377 ~f~~~~~g~~~G~~  390 (398)
T PLN00033        377 KFFDDKKGFVLGND  390 (398)
T ss_pred             EEcCCCceEEEeCC
Confidence            77777889988765

>PTZ00420 coronin; Provisional

Probab=96.67  E-value=0.39  Score=48.13  Aligned_cols=156  Identities=9%  Similarity=0.043  Sum_probs=83.8

Q ss_pred             CCccEEEcCCCcE-E-EEecCCeEEEEe--CCce-EEEEecCCCcccCeEEcCCCCEEEEeCC-CcEEEEc-CCC--cEE
Q 017371           80 HPEDASMDKNGVI-Y-TATRDGWIKRLQ--DGTW-VNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG--VEN  150 (372)
Q Consensus        80 ~p~~i~~d~~G~l-~-v~~~~g~i~~~~--~g~~-~~~~~~~~~p~~gl~~d~dG~l~v~~~~-~gv~~~~-~~g--~~~  150 (372)
                      ...++++.+++.. . .+..+|.|..||  .++. ..+. ...... ++.++++|+++++... ..+..+| .++  ...
T Consensus       127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~-SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~t  204 (568)
T PTZ00420        127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLS-SLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASS  204 (568)
T ss_pred             cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEE-EEEECCCCCEEEEEecCCEEEEEECCCCcEEEE
Confidence            4567888887753 3 345789999998  4442 2232 223455 8999999998887543 4577788 566  332


Q ss_pred             EeeecCCcc-cccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCC-CeEEEEeCCccCcce--EEE
Q 017371          151 FLSYVNGSK-LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS-NITTLVADGFYFANG--VAL  226 (372)
Q Consensus       151 l~~~~~~~~-~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t-~~~~~~~~~~~~~~g--i~~  226 (372)
                      +.. ..+.. .....-..+.+++..+++....             ......|..+|..+ ++.......-..+..  ..+
T Consensus       205 l~g-H~g~~~s~~v~~~~fs~d~~~IlTtG~d-------------~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~  270 (568)
T PTZ00420        205 FHI-HDGGKNTKNIWIDGLGGDDNYILSTGFS-------------KNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHY  270 (568)
T ss_pred             Eec-ccCCceeEEEEeeeEcCCCCEEEEEEcC-------------CCCccEEEEEECCCCCCceEEEEecCCccceEEee
Confidence            211 11110 0111111223566666653320             00123577777653 222221111111222  235


Q ss_pred             ecCCCEEEEEeCCCCeEEEEEccCC
Q 017371          227 SRDEDYVVVCESWKFRCRKYWLKGE  251 (372)
Q Consensus       227 ~~dg~~l~v~~~~~~~i~~~~~~g~  251 (372)
                      +++.+.+|++..++..|..|++..+
T Consensus       271 D~~tg~l~lsGkGD~tIr~~e~~~~  295 (568)
T PTZ00420        271 DESTGLIYLIGKGDGNCRYYQHSLG  295 (568)
T ss_pred             eCCCCCEEEEEECCCeEEEEEccCC
Confidence            6665668888888888888887543

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=96.64  E-value=0.49  Score=42.80  Aligned_cols=58  Identities=10%  Similarity=0.069  Sum_probs=37.0

Q ss_pred             CCCCCCccEEEcCCCcEEEEe-cCCeEEEEe-C-----Cce---E-EEEe-----cCCCcccCeEEcCCCCEEEE
Q 017371           76 GSVNHPEDASMDKNGVIYTAT-RDGWIKRLQ-D-----GTW---V-NWKF-----IDSQTLVGLTSTKEGHLIIC  134 (372)
Q Consensus        76 g~~~~p~~i~~d~~G~l~v~~-~~g~i~~~~-~-----g~~---~-~~~~-----~~~~p~~gl~~d~dG~l~v~  134 (372)
                      ..+..|.+|++.+.|.+|+++ ..+....|+ +     |..   . .+..     ..+.|. |+.+......-|+
T Consensus        20 p~L~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PT-GiVfN~~~~F~vt   93 (336)
T TIGR03118        20 PGLRNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPT-GQVFNGSDTFVVS   93 (336)
T ss_pred             ccccccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCcc-EEEEeCCCceEEc
Confidence            347899999999999999999 456566666 3     322   1 1111     123577 8888754444344

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.62  E-value=0.84  Score=46.14  Aligned_cols=220  Identities=12%  Similarity=0.080  Sum_probs=113.1

Q ss_pred             cEEEEecCCeEEEEeCCceEEEEecC---CCcccCeEEcCCCCE--EEEe------CC-CcEEEEcCCC-cEEEeeecCC
Q 017371           91 VIYTATRDGWIKRLQDGTWVNWKFID---SQTLVGLTSTKEGHL--IICD------NA-NGLHKVSEDG-VENFLSYVNG  157 (372)
Q Consensus        91 ~l~v~~~~g~i~~~~~g~~~~~~~~~---~~p~~gl~~d~dG~l--~v~~------~~-~gv~~~~~~g-~~~l~~~~~~  157 (372)
                      .+|.-. +|.+.+++++.........   ..+. ..++.+||+.  |+..      .. ..|+..+..+ .+.+.   .+
T Consensus       322 ~~~~v~-~G~l~~~~~~~~~pv~g~~g~~~~vs-spaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt---~g  396 (591)
T PRK13616        322 GLHALV-DGSLVSVDGQGVTPVPGAFGQMGNIT-SAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVL---EG  396 (591)
T ss_pred             cceEEE-CCeEEEecCCCeeeCCCccccccCcc-cceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeee---cC
Confidence            566443 7888888744433322211   2334 6778888863  3331      11 2355555333 33331   12


Q ss_pred             cccccccceEEccCC-cEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEE
Q 017371          158 SKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVC  236 (372)
Q Consensus       158 ~~~~~~~~l~~d~dG-~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~  236 (372)
                      ..   ...-.+++|| .||+......      ..-+......+.++.++.+.++...  ..-.....+.|++||.++.+.
T Consensus       397 ~~---~t~PsWspDG~~lw~v~dg~~------~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i  465 (591)
T PRK13616        397 HS---LTRPSWSLDADAVWVVVDGNT------VVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMI  465 (591)
T ss_pred             CC---CCCceECCCCCceEEEecCcc------eEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEE
Confidence            11   2234788884 6888632100      0001112245677777666555543  112236678999999988887


Q ss_pred             eCCCCeEEE---EEccCCC--CcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCcccc
Q 017371          237 ESWKFRCRK---YWLKGER--KGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFS  311 (372)
Q Consensus       237 ~~~~~~i~~---~~~~g~~--~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~  311 (372)
                      ..  .+|+.   ....+..  +.........+...+..+..-.++.|.|+....                          
T Consensus       466 ~~--g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~--------------------------  517 (591)
T PRK13616        466 IG--GKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDP--------------------------  517 (591)
T ss_pred             EC--CEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEecCC--------------------------
Confidence            63  46666   3322221  111111222222224567777888887775431                          


Q ss_pred             ccccCCCceEEEEECCCCcEEEEEECCCCCeeccceeeEEECCEEEEEeCCC
Q 017371          312 QFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTS  363 (372)
Q Consensus       312 ~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~igs~~~  363 (372)
                             ...+++++-+|.....+  +.++....+..+.-..+.||+++..+
T Consensus       518 -------~~~v~~v~vDG~~~~~~--~~~n~~~~v~~vaa~~~~iyv~~~~g  560 (591)
T PRK13616        518 -------EHPVWYVNLDGSNSDAL--PSRNLSAPVVAVAASPSTVYVTDARA  560 (591)
T ss_pred             -------CCceEEEecCCcccccc--CCCCccCceEEEecCCceEEEEcCCc
Confidence                   23467777777664432  33333444555555556788876543

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=96.61  E-value=0.46  Score=43.62  Aligned_cols=185  Identities=15%  Similarity=0.105  Sum_probs=96.4

Q ss_pred             EecCCCCCCCccEEEcCCCcEEEEe--cCCeEEEEe--CCceEEEEe-cCCCcccCeEEcCCC-CEEEEeCCCcEEEEc-
Q 017371           72 KVGEGSVNHPEDASMDKNGVIYTAT--RDGWIKRLQ--DGTWVNWKF-IDSQTLVGLTSTKEG-HLIICDNANGLHKVS-  144 (372)
Q Consensus        72 ~~~~g~~~~p~~i~~d~~G~l~v~~--~~g~i~~~~--~g~~~~~~~-~~~~p~~gl~~d~dG-~l~v~~~~~gv~~~~-  144 (372)
                      .+..|.+...+++++||. +=|+++  .|+.|..||  .|....... -..... |+++.+.- -||-+..+.-|-++| 
T Consensus       145 rVi~gHlgWVr~vavdP~-n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr-~vavS~rHpYlFs~gedk~VKCwDL  222 (460)
T KOG0285|consen  145 RVISGHLGWVRSVAVDPG-NEWFATGSADRTIKIWDLATGQLKLTLTGHIETVR-GVAVSKRHPYLFSAGEDKQVKCWDL  222 (460)
T ss_pred             hhhhhccceEEEEeeCCC-ceeEEecCCCceeEEEEcccCeEEEeecchhheee-eeeecccCceEEEecCCCeeEEEec
Confidence            344566778999999986 455544  677788888  776654332 122345 78887543 355555555688888 


Q ss_pred             CCC--cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcc
Q 017371          145 EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFAN  222 (372)
Q Consensus       145 ~~g--~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~  222 (372)
                      +..  ++.+-    | -+..+..++..|.-.+.++-.                 .+..+..+|..+.....++.+...|.
T Consensus       223 e~nkvIR~Yh----G-HlS~V~~L~lhPTldvl~t~g-----------------rDst~RvWDiRtr~~V~~l~GH~~~V  280 (460)
T KOG0285|consen  223 EYNKVIRHYH----G-HLSGVYCLDLHPTLDVLVTGG-----------------RDSTIRVWDIRTRASVHVLSGHTNPV  280 (460)
T ss_pred             hhhhhHHHhc----c-ccceeEEEeccccceeEEecC-----------------CcceEEEeeecccceEEEecCCCCcc
Confidence            443  33321    1 123556677777666666532                 22233334554444444455554443


Q ss_pred             -eEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 017371          223 -GVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       223 -gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~  284 (372)
                       .+...+-.-.+ ++.+.+..|.-+|+..++...  ... +.......++..++-+++.+...
T Consensus       281 ~~V~~~~~dpqv-it~S~D~tvrlWDl~agkt~~--tlt-~hkksvral~lhP~e~~fASas~  339 (460)
T KOG0285|consen  281 ASVMCQPTDPQV-ITGSHDSTVRLWDLRAGKTMI--TLT-HHKKSVRALCLHPKENLFASASP  339 (460)
T ss_pred             eeEEeecCCCce-EEecCCceEEEeeeccCceeE--eee-cccceeeEEecCCchhhhhccCC
Confidence             33333333224 344455667666664332111  111 11112345566666556555443

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=96.60  E-value=0.9  Score=45.34  Aligned_cols=127  Identities=13%  Similarity=0.091  Sum_probs=67.6

Q ss_pred             EEEcCCCcEEEEecCCeEEEEe--CCceEEEEecCCC-----cccCeEEcCCCCEEEEeC------CCcEEEEc-CCCcE
Q 017371           84 ASMDKNGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQ-----TLVGLTSTKEGHLIICDN------ANGLHKVS-EDGVE  149 (372)
Q Consensus        84 i~~d~~G~l~v~~~~g~i~~~~--~g~~~~~~~~~~~-----p~~gl~~d~dG~l~v~~~------~~gv~~~~-~~g~~  149 (372)
                      +++. ++++|+++.+|+|+.+|  +|+...-......     ....-.+ .+|.++++..      ...|+.+| ++|..
T Consensus       116 ~av~-~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v-~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~  193 (527)
T TIGR03075       116 VALY-DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLV-VKGKVITGISGGEFGVRGYVTAYDAKTGKL  193 (527)
T ss_pred             ceEE-CCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEE-ECCEEEEeecccccCCCcEEEEEECCCCce
Confidence            3443 57899999999999999  6765432111110     1101112 2577888753      12477888 67722


Q ss_pred             EEe-eecCCc----------------------------ccccccceEEcc-CCcEEEEeCCCCCCCcccccccc--cccC
Q 017371          150 NFL-SYVNGS----------------------------KLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDIL--EGKP  197 (372)
Q Consensus       150 ~l~-~~~~~~----------------------------~~~~~~~l~~d~-dG~i~vtd~~~~~~~~~~~~~~~--~~~~  197 (372)
                      ... ...+..                            .-.....+++|+ .|.||+.....    ..+.....  ...-
T Consensus       194 lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp----~p~~~~~r~gdnl~  269 (527)
T TIGR03075       194 VWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNP----SPWNSHLRPGDNLY  269 (527)
T ss_pred             eEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCC----CCCCCCCCCCCCcc
Confidence            221 111110                            001223568886 46788876431    00111111  1122


Q ss_pred             CCeEEEEeCCCCeEEEEeC
Q 017371          198 HGQLLKYDPSSNITTLVAD  216 (372)
Q Consensus       198 ~g~v~~~d~~t~~~~~~~~  216 (372)
                      ...|+.+|.+||+.++..+
T Consensus       270 ~~s~vAld~~TG~~~W~~Q  288 (527)
T TIGR03075       270 TSSIVARDPDTGKIKWHYQ  288 (527)
T ss_pred             ceeEEEEccccCCEEEeee
Confidence            4579999999999988653

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A

Probab=96.59  E-value=0.1  Score=45.38  Aligned_cols=161  Identities=17%  Similarity=0.140  Sum_probs=84.6

Q ss_pred             cccCceEecCCCCCCCccEEEcCCCcEEEEecCCeEEEEe---CC-c-----eEEEEec-CCCcccCeEEcCCCCEEEEe
Q 017371           66 QLQDFIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQ---DG-T-----WVNWKFI-DSQTLVGLTSTKEGHLIICD  135 (372)
Q Consensus        66 ~l~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~g~i~~~~---~g-~-----~~~~~~~-~~~p~~gl~~d~dG~l~v~~  135 (372)
                      .+....+++.| ..+=..|+..++|.||....+ .+++..   .+ +     -+++... -++-. .|.+++.|-||..+
T Consensus        22 ~~~~a~~iG~g-w~~~~~i~~~P~g~lY~I~~~-~lY~~~~~~~~~~~~~~~~~~Ig~g~W~~F~-~i~~d~~G~LYaV~   98 (229)
T PF14517_consen   22 WSDRAITIGSG-WNNFRDIAAGPNGRLYAIRND-GLYRGSPSSSGGNTWDSGSKQIGDGGWNSFK-FIFFDPTGVLYAVT   98 (229)
T ss_dssp             HHHHSEEEESS--TT-SEEEE-TTS-EEEEETT-EEEEES---STT--HHHH-EEEE-S-GGG-S-EEEE-TTS-EEEEE
T ss_pred             ccchhhhcCcc-ccccceEEEcCCceEEEEECC-ceEEecCCccCcccccccCcccccCccccee-EEEecCCccEEEec
Confidence            45567778776 567778999999999998754 688873   21 1     2233222 12333 78999999999887


Q ss_pred             CCCcEEEEc-C-CC-cEE---EeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEE-eCCC
Q 017371          136 NANGLHKVS-E-DG-VEN---FLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKY-DPSS  208 (372)
Q Consensus       136 ~~~gv~~~~-~-~g-~~~---l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~-d~~t  208 (372)
                      ....+++.. . ++ ...   ......+..-+....|.++++|.||.-+                  +++++++. .|+.
T Consensus        99 ~~G~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~~vfa~~~GvLY~i~------------------~dg~~~~~~~p~~  160 (229)
T PF14517_consen   99 PDGKLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFDAVFAGPNGVLYAIT------------------PDGRLYRRYRPDG  160 (229)
T ss_dssp             TT-EEEEES---STT--HHH-HSEEEE-SSGGGEEEEEE-TTS-EEEEE------------------TTE-EEEE---SS
T ss_pred             cccceeeccCCCccCcchhhccceecccCCCccceEEEeCCCccEEEEc------------------CCCceEEeCCCCC
Confidence            654577877 2 22 111   1111111222334578889999999854                  45678887 4443


Q ss_pred             CeE-------EEEeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEcc
Q 017371          209 NIT-------TLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLK  249 (372)
Q Consensus       209 ~~~-------~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~  249 (372)
                      ..-       .+...+...+.-|.+++++. ||.+++ +..|+|+...
T Consensus       161 ~~~~W~~~s~~v~~~gw~~~~~i~~~~~g~-L~~V~~-~G~lyr~~~p  206 (229)
T PF14517_consen  161 GSDRWLSGSGLVGGGGWDSFHFIFFSPDGN-LWAVKS-NGKLYRGRPP  206 (229)
T ss_dssp             TT--HHHH-EEEESSSGGGEEEEEE-TTS--EEEE-E-TTEEEEES--
T ss_pred             CCCccccccceeccCCcccceEEeeCCCCc-EEEEec-CCEEeccCCc
Confidence            211       11123334455678888886 887754 5678887654

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.57  E-value=0.12  Score=47.61  Aligned_cols=98  Identities=16%  Similarity=0.105  Sum_probs=57.5

Q ss_pred             CcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCCCC---------e
Q 017371          172 GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKF---------R  242 (372)
Q Consensus       172 G~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~---------~  242 (372)
                      .++||.|..            +.. ..++++.||.+++++.=..+.-..++ ++++||++.+|++++.-.         -
T Consensus         3 ~rvyV~D~~------------~~~-~~~rv~viD~d~~k~lGmi~~g~~~~-~~~spdgk~~y~a~T~~sR~~rG~RtDv   68 (342)
T PF06433_consen    3 HRVYVQDPV------------FFH-MTSRVYVIDADSGKLLGMIDTGFLGN-VALSPDGKTIYVAETFYSRGTRGERTDV   68 (342)
T ss_dssp             TEEEEEE-G------------GGG-SSEEEEEEETTTTEEEEEEEEESSEE-EEE-TTSSEEEEEEEEEEETTEEEEEEE
T ss_pred             cEEEEECCc------------ccc-ccceEEEEECCCCcEEEEeecccCCc-eeECCCCCEEEEEEEEEeccccccceeE
Confidence            468888763            111 23699999999888655444444555 778999999999887332         2


Q ss_pred             EEEEEccCCCCcceeeeccCC-----CCCCceeEEcCCC-CEEEEEec
Q 017371          243 CRKYWLKGERKGKLETFAENL-----PGAPDNINLAPDG-TFWIAIIK  284 (372)
Q Consensus       243 i~~~~~~g~~~~~~~~~~~~~-----~g~p~~i~~d~~G-~lwva~~~  284 (372)
                      |..|+..+-.. ..|+.+...     ..++..+++..|| .+||.+..
T Consensus        69 v~~~D~~TL~~-~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~T  115 (342)
T PF06433_consen   69 VEIWDTQTLSP-TGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFT  115 (342)
T ss_dssp             EEEEETTTTEE-EEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEES
T ss_pred             EEEEecCcCcc-cceEecCCcchheecccccceEEccCCcEEEEEccC
Confidence            55566544211 112222111     1256778888888 57777765

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=96.54  E-value=0.18  Score=47.06  Aligned_cols=147  Identities=14%  Similarity=0.110  Sum_probs=85.4

Q ss_pred             ecCCCcccCeEEcCCCCEEEEeC-C--CcEEEEcCCC-cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccc
Q 017371          114 FIDSQTLVGLTSTKEGHLIICDN-A--NGLHKVSEDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYC  189 (372)
Q Consensus       114 ~~~~~p~~gl~~d~dG~l~v~~~-~--~gv~~~~~~g-~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~  189 (372)
                      ...+... -+.|.++|+-..+.+ +  ..++.+..++ ++...+ ..|- ...+..|.+.||.+-.++=.          
T Consensus       222 ~htdEVW-fl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~t-lvgh-~~~V~yi~wSPDdryLlaCg----------  288 (519)
T KOG0293|consen  222 DHTDEVW-FLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKT-LVGH-SQPVSYIMWSPDDRYLLACG----------  288 (519)
T ss_pred             hCCCcEE-EEEEcCCCeeEeeccCCceEEEEEEecCcceeeeee-eecc-cCceEEEEECCCCCeEEecC----------
Confidence            3445566 777888887333322 1  2345555555 333222 2221 12345678888887666521          


Q ss_pred             cccccccCCCeEEEEeCCCCeEEEEe-CCc-cCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCC
Q 017371          190 LDILEGKPHGQLLKYDPSSNITTLVA-DGF-YFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAP  267 (372)
Q Consensus       190 ~~~~~~~~~g~v~~~d~~t~~~~~~~-~~~-~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p  267 (372)
                             ....+...|.++|...... .++ ..+...+|.|||.. +|+.+.+..+...+++|+..+..+..-.  + ..
T Consensus       289 -------~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~-~V~Gs~dr~i~~wdlDgn~~~~W~gvr~--~-~v  357 (519)
T KOG0293|consen  289 -------FDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFR-FVTGSPDRTIIMWDLDGNILGNWEGVRD--P-KV  357 (519)
T ss_pred             -------chHheeeccCCcchhhhhcccCcCCCcceeEEccCCce-eEecCCCCcEEEecCCcchhhccccccc--c-ee
Confidence                   2233777788888765543 232 33456789999985 6677777889999999875554433221  1 24


Q ss_pred             ceeEEcCCCC-EEEEEec
Q 017371          268 DNINLAPDGT-FWIAIIK  284 (372)
Q Consensus       268 ~~i~~d~~G~-lwva~~~  284 (372)
                      ..+++..||. ++..+..
T Consensus       358 ~dlait~Dgk~vl~v~~d  375 (519)
T KOG0293|consen  358 HDLAITYDGKYVLLVTVD  375 (519)
T ss_pred             EEEEEcCCCcEEEEEecc
Confidence            6788999995 4444433

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=96.53  E-value=0.34  Score=41.52  Aligned_cols=129  Identities=14%  Similarity=0.128  Sum_probs=74.8

Q ss_pred             CCCCEEEEeCCCcEEEEc-CCC-cEEEeeecCCcccccccceEEccCCcE-EEEeCCCCCCCcccccccccccCCCeEEE
Q 017371          127 KEGHLIICDNANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSL-YFTVSSSKYLPHEYCLDILEGKPHGQLLK  203 (372)
Q Consensus       127 ~dG~l~v~~~~~gv~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~d~dG~i-~vtd~~~~~~~~~~~~~~~~~~~~g~v~~  203 (372)
                      ..+.-|.++  ..++.++ .+. ...+.....    ..+.+++..|+|+- .+..                +.....+..
T Consensus        30 ~~~ks~~~~--~~l~~~~~~~~~~~~i~l~~~----~~I~~~~WsP~g~~favi~----------------g~~~~~v~l   87 (194)
T PF08662_consen   30 KSGKSYYGE--FELFYLNEKNIPVESIELKKE----GPIHDVAWSPNGNEFAVIY----------------GSMPAKVTL   87 (194)
T ss_pred             cCcceEEee--EEEEEEecCCCccceeeccCC----CceEEEEECcCCCEEEEEE----------------ccCCcccEE
Confidence            444444433  2477776 333 443322211    13678999999864 3321                112336777


Q ss_pred             EeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCCC--CeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEE
Q 017371          204 YDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK--FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIA  281 (372)
Q Consensus       204 ~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~--~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva  281 (372)
                      ||.+...+..+.  -...|.+.|+|+|+++.++..++  +.|..++.+..     +............+..+++|++.++
T Consensus        88 yd~~~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~-----~~i~~~~~~~~t~~~WsPdGr~~~t  160 (194)
T PF08662_consen   88 YDVKGKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK-----KKISTFEHSDATDVEWSPDGRYLAT  160 (194)
T ss_pred             EcCcccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC-----EEeeccccCcEEEEEEcCCCCEEEE
Confidence            777633333332  23457899999999888887543  35777776522     2222222223567889999998887


Q ss_pred             Eec
Q 017371          282 IIK  284 (372)
Q Consensus       282 ~~~  284 (372)
                      ...
T Consensus       161 a~t  163 (194)
T PF08662_consen  161 ATT  163 (194)
T ss_pred             EEe
Confidence            654

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=96.48  E-value=0.039  Score=49.43  Aligned_cols=100  Identities=14%  Similarity=0.176  Sum_probs=63.6

Q ss_pred             cccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEE---EeCCccCcceEEEecCCCEEEEEeC
Q 017371          162 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL---VADGFYFANGVALSRDEDYVVVCES  238 (372)
Q Consensus       162 ~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~---~~~~~~~~~gi~~~~dg~~l~v~~~  238 (372)
                      .++.+.+.|...|.++-+                 .++.|-.+|...-..+.   +......-..+.++|.|.+|.+.. 
T Consensus       174 evn~l~FHPre~ILiS~s-----------------rD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgT-  235 (430)
T KOG0640|consen  174 EVNDLDFHPRETILISGS-----------------RDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGT-  235 (430)
T ss_pred             cccceeecchhheEEecc-----------------CCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEec-
Confidence            567899999999998744                 56677777754211111   223333345788999999777654 


Q ss_pred             CCCeEEEEEccCCCCcceeeeccC-----CCCCCceeEEcCCCCEEEEEec
Q 017371          239 WKFRCRKYWLKGERKGKLETFAEN-----LPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       239 ~~~~i~~~~~~g~~~~~~~~~~~~-----~~g~p~~i~~d~~G~lwva~~~  284 (372)
                      ....+..|++++     ...|...     ..+....+...+.|++||....
T Consensus       236 dHp~~rlYdv~T-----~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSk  281 (430)
T KOG0640|consen  236 DHPTLRLYDVNT-----YQCFVSANPDDQHTGAITQVRYSSTGSLYVTASK  281 (430)
T ss_pred             CCCceeEEeccc-----eeEeeecCcccccccceeEEEecCCccEEEEecc
Confidence            455677777754     2334322     2223445778999999998765

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=96.47  E-value=0.17  Score=47.61  Aligned_cols=156  Identities=16%  Similarity=0.059  Sum_probs=77.2

Q ss_pred             CCCeEEEEeCCCCeEEEEeCCc-cCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCC--ceeEEc
Q 017371          197 PHGQLLKYDPSSNITTLVADGF-YFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAP--DNINLA  273 (372)
Q Consensus       197 ~~g~v~~~d~~t~~~~~~~~~~-~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p--~~i~~d  273 (372)
                      +...+|.+|.++++.+++-++- ...-|..++++.+.+|+... +..|+++++++.+  ...++. ...++-  .....+
T Consensus        58 g~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~-~~~l~~vdL~T~e--~~~vy~-~p~~~~g~gt~v~n  133 (386)
T PF14583_consen   58 GNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKN-GRSLRRVDLDTLE--ERVVYE-VPDDWKGYGTWVAN  133 (386)
T ss_dssp             SS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEET-TTEEEEEETTT----EEEEEE---TTEEEEEEEEE-
T ss_pred             CCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEEC-CCeEEEEECCcCc--EEEEEE-CCcccccccceeeC
Confidence            5567999999999999886653 22347888899898876553 4579999997643  222322 222222  234468


Q ss_pred             CCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEECC-CCcEEEEEECCC--CC-eec--cce
Q 017371          274 PDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPT--GQ-LMS--FVT  347 (372)
Q Consensus       274 ~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~--g~-~~~--~~t  347 (372)
                      +|+...++....+.. ...+.++...+++..           ..+..+|+.++- .|+....+.+..  |- .++  .++
T Consensus       134 ~d~t~~~g~e~~~~d-~~~l~~~~~f~e~~~-----------a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~  201 (386)
T PF14583_consen  134 SDCTKLVGIEISRED-WKPLTKWKGFREFYE-----------ARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPT  201 (386)
T ss_dssp             TTSSEEEEEEEEGGG------SHHHHHHHHH-----------C---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEE
T ss_pred             CCccEEEEEEEeehh-ccCccccHHHHHHHh-----------hCCCceEEEEECCCCceeEEEecCccccCcccCCCCCC
Confidence            899998887654332 222344556777666           344567777774 455544444432  10 000  112


Q ss_pred             ee---EEE-----CCEEEEEeCCCCeEEE
Q 017371          348 SG---LQV-----DNHLYVISLTSNFIGK  368 (372)
Q Consensus       348 ~~---~~~-----~g~L~igs~~~~~i~~  368 (372)
                      -+   .|.     +.+||+....+.-+..
T Consensus       202 li~fCHEGpw~~Vd~RiW~i~~dg~~~~~  230 (386)
T PF14583_consen  202 LIMFCHEGPWDLVDQRIWTINTDGSNVKK  230 (386)
T ss_dssp             EEEEEE-S-TTTSS-SEEEEETTS---EE
T ss_pred             EEEEeccCCcceeceEEEEEEcCCCccee
Confidence            22   222     2488988877655443

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=96.45  E-value=0.06  Score=49.22  Aligned_cols=84  Identities=11%  Similarity=0.141  Sum_probs=51.7

Q ss_pred             CCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCC
Q 017371          197 PHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDG  276 (372)
Q Consensus       197 ~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G  276 (372)
                      .++.|+.||..+++...-...-..+|+|+|.| +.+.+++...+..++.||+..-. ....++.+.... .-.+.+.+-|
T Consensus       208 sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~-~p~~v~~dhvsA-V~dVdfsptG  284 (433)
T KOG0268|consen  208 SDRSIVLYDLRQASPLKKVILTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLS-RPLNVHKDHVSA-VMDVDFSPTG  284 (433)
T ss_pred             cCCceEEEecccCCccceeeeeccccceecCc-cccceeeccccccceehhhhhhc-ccchhhccccee-EEEeccCCCc
Confidence            46678889987655433223335689999999 66788888888899999875321 111222222111 2345567778


Q ss_pred             CEEEEEe
Q 017371          277 TFWIAII  283 (372)
Q Consensus       277 ~lwva~~  283 (372)
                      .=+|+..
T Consensus       285 ~Efvsgs  291 (433)
T KOG0268|consen  285 QEFVSGS  291 (433)
T ss_pred             chhcccc
Confidence            6666543

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.43  E-value=1.1  Score=46.19  Aligned_cols=127  Identities=15%  Similarity=0.195  Sum_probs=83.9

Q ss_pred             CCCCCCccEEEcCCCcEEEEe-cCCeEEEEe-CC--ceEEEEecCCCcccCeEEcCCCCEEEEeCCCcEEEEcCCCcEEE
Q 017371           76 GSVNHPEDASMDKNGVIYTAT-RDGWIKRLQ-DG--TWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDGVENF  151 (372)
Q Consensus        76 g~~~~p~~i~~d~~G~l~v~~-~~g~i~~~~-~g--~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~~~g~~~l  151 (372)
                      |......++.+++.-.+.+++ .|+.|..|| +.  .++++...-++-+ -++..|..+||.+.++.|+.++.-+     
T Consensus       248 gH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW-~laahP~lNLfAAgHDsGm~VFkle-----  321 (1202)
T KOG0292|consen  248 GHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFW-ILAAHPELNLFAAGHDSGMIVFKLE-----  321 (1202)
T ss_pred             cccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEE-EEEecCCcceeeeecCCceEEEEEc-----
Confidence            556678889999877788887 688888888 33  4666666667778 8999999999999888887666411     


Q ss_pred             eeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeC------CccCcceEE
Q 017371          152 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD------GFYFANGVA  225 (372)
Q Consensus       152 ~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~------~~~~~~gi~  225 (372)
                               +.....++..++-+|+                    ....|+.+|..+.+-..++.      ....+..+.
T Consensus       322 ---------RErpa~~v~~n~LfYv--------------------kd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~sms  372 (1202)
T KOG0292|consen  322 ---------RERPAYAVNGNGLFYV--------------------KDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLS  372 (1202)
T ss_pred             ---------ccCceEEEcCCEEEEE--------------------ccceEEeeeccccccceeEeccCCCcccCCcceee
Confidence                     0111345544444555                    23467778876533333221      123345688


Q ss_pred             EecCCCEEEEEe
Q 017371          226 LSRDEDYVVVCE  237 (372)
Q Consensus       226 ~~~dg~~l~v~~  237 (372)
                      +.|..+.+.++.
T Consensus       373 YNpae~~vlics  384 (1202)
T KOG0292|consen  373 YNPAENAVLICS  384 (1202)
T ss_pred             eccccCeEEEEe
Confidence            889888888884

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.40  E-value=1  Score=45.58  Aligned_cols=181  Identities=14%  Similarity=0.096  Sum_probs=94.3

Q ss_pred             CCCccEEEcCCCc--EEEEe-------cCCeEEEEe-CCceEEEEecCCCcccCeEEcCCC-CEEEEeCCCcEEEEc-CC
Q 017371           79 NHPEDASMDKNGV--IYTAT-------RDGWIKRLQ-DGTWVNWKFIDSQTLVGLTSTKEG-HLIICDNANGLHKVS-ED  146 (372)
Q Consensus        79 ~~p~~i~~d~~G~--l~v~~-------~~g~i~~~~-~g~~~~~~~~~~~p~~gl~~d~dG-~l~v~~~~~gv~~~~-~~  146 (372)
                      ..+.+.++.++|.  .|+..       ....|+..+ ++..+.+.. +.... .-.+++|| .||+......+.++. .+
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~-g~~~t-~PsWspDG~~lw~v~dg~~~~~v~~~~  427 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLE-GHSLT-RPSWSLDADAVWVVVDGNTVVRVIRDP  427 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeec-CCCCC-CceECCCCCceEEEecCcceEEEeccC
Confidence            4567788888884  34442       123566666 555444432 22223 66799995 588775443344444 32


Q ss_pred             C-cEEEeeecCCcc-----cccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEE---EeCCCCeEEE---
Q 017371          147 G-VENFLSYVNGSK-----LRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLK---YDPSSNITTL---  213 (372)
Q Consensus       147 g-~~~l~~~~~~~~-----~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~---~d~~t~~~~~---  213 (372)
                      + -+.......+..     ...+..+.+.+||+ |.+.-                   .++|+.   ...+.|+.+.   
T Consensus       428 ~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-------------------~g~v~Va~Vvr~~~G~~~l~~~  488 (591)
T PRK13616        428 ATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-------------------GGKVYLAVVEQTEDGQYALTNP  488 (591)
T ss_pred             CCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-------------------CCEEEEEEEEeCCCCceeeccc
Confidence            2 222111111110     12577889999994 55531                   245555   4444455333   


Q ss_pred             --EeCCccC-cceEEEecCCCEEEEEeC-CCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 017371          214 --VADGFYF-ANGVALSRDEDYVVVCES-WKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       214 --~~~~~~~-~~gi~~~~dg~~l~v~~~-~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~  284 (372)
                        +...+.. +..+.|..++. |++... .+..++++.++|.....  ....++......++-++ +.+|+++..
T Consensus       489 ~~l~~~l~~~~~~l~W~~~~~-L~V~~~~~~~~v~~v~vDG~~~~~--~~~~n~~~~v~~vaa~~-~~iyv~~~~  559 (591)
T PRK13616        489 REVGPGLGDTAVSLDWRTGDS-LVVGRSDPEHPVWYVNLDGSNSDA--LPSRNLSAPVVAVAASP-STVYVTDAR  559 (591)
T ss_pred             EEeecccCCccccceEecCCE-EEEEecCCCCceEEEecCCccccc--cCCCCccCceEEEecCC-ceEEEEcCC
Confidence              3344444 46788998887 556443 44569999998863221  01111111112233332 468887765

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=96.39  E-value=0.047  Score=51.61  Aligned_cols=150  Identities=11%  Similarity=0.086  Sum_probs=88.8

Q ss_pred             CCccEEEcCCC-cEE-EEecCCeEEEEe--CCce-EEEEecCCCcccCeEEcCCCCEEEEeCCCc-EEEEc-CCC-cEEE
Q 017371           80 HPEDASMDKNG-VIY-TATRDGWIKRLQ--DGTW-VNWKFIDSQTLVGLTSTKEGHLIICDNANG-LHKVS-EDG-VENF  151 (372)
Q Consensus        80 ~p~~i~~d~~G-~l~-v~~~~g~i~~~~--~g~~-~~~~~~~~~p~~gl~~d~dG~l~v~~~~~g-v~~~~-~~g-~~~l  151 (372)
                      -|.++-+-+++ +++ +|..+++|..||  .|++ ..+....+..+ .|.|-++|+-+|+....+ +..++ ..+ ...+
T Consensus       301 ~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~-~i~F~~~g~rFissSDdks~riWe~~~~v~ik~  379 (503)
T KOG0282|consen  301 VPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAIL-DITFVDEGRRFISSSDDKSVRIWENRIPVPIKN  379 (503)
T ss_pred             CceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhhee-eeEEccCCceEeeeccCccEEEEEcCCCccchh
Confidence            47778787777 555 556899999999  5653 33333444556 888889998888876643 55555 333 1111


Q ss_pred             eeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCC---CeEEEEeCC---ccCcceEE
Q 017371          152 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS---NITTLVADG---FYFANGVA  225 (372)
Q Consensus       152 ~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t---~~~~~~~~~---~~~~~gi~  225 (372)
                      .   ....++....++..|+|..+.+.+                 -..+++.+....   -..+....+   -..+-.+.
T Consensus       380 i---~~~~~hsmP~~~~~P~~~~~~aQs-----------------~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~  439 (503)
T KOG0282|consen  380 I---ADPEMHTMPCLTLHPNGKWFAAQS-----------------MDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVD  439 (503)
T ss_pred             h---cchhhccCcceecCCCCCeehhhc-----------------cCceEEEEecccccccCHhhhhcceeccCceeeEE
Confidence            1   112234555788888888666543                 234455543210   000011122   12355788


Q ss_pred             EecCCCEEEEEeCCCCeEEEEEccCC
Q 017371          226 LSRDEDYVVVCESWKFRCRKYWLKGE  251 (372)
Q Consensus       226 ~~~dg~~l~v~~~~~~~i~~~~~~g~  251 (372)
                      ++|||++| ++..+.++++.|+.++.
T Consensus       440 fSpDG~~l-~SGdsdG~v~~wdwkt~  464 (503)
T KOG0282|consen  440 FSPDGRTL-CSGDSDGKVNFWDWKTT  464 (503)
T ss_pred             EcCCCCeE-EeecCCccEEEeechhh
Confidence            99999955 45556778999887654

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=96.35  E-value=0.099  Score=48.92  Aligned_cols=142  Identities=11%  Similarity=0.102  Sum_probs=86.9

Q ss_pred             CccEEEcCCCcEEEE-ecCCeEEEEe--CC-ceEEEEecCCCcccCeEEcCCCCEEEEeCCCc-EEEEc-C-CC-cEEEe
Q 017371           81 PEDASMDKNGVIYTA-TRDGWIKRLQ--DG-TWVNWKFIDSQTLVGLTSTKEGHLIICDNANG-LHKVS-E-DG-VENFL  152 (372)
Q Consensus        81 p~~i~~d~~G~l~v~-~~~g~i~~~~--~g-~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~g-v~~~~-~-~g-~~~l~  152 (372)
                      -.+.++-|||.|+.+ +.||.|..||  .+ .+..|..- ..|...|.|..+|-..++....+ |..+| + .. +..+.
T Consensus       350 ~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpgh-t~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~  428 (506)
T KOG0289|consen  350 YTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGH-TGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQ  428 (506)
T ss_pred             eEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCC-CCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceee
Confidence            456788889877654 3788777777  22 34444332 23444899988786555555556 88888 3 33 44332


Q ss_pred             eecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEe---CCccCcceEEEecC
Q 017371          153 SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA---DGFYFANGVALSRD  229 (372)
Q Consensus       153 ~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~---~~~~~~~gi~~~~d  229 (372)
                      ..    .....+.+.+|..|+..+.-.                 .+=+||.++-.+++++.+.   ......+++.|...
T Consensus       429 l~----~~~~v~s~~fD~SGt~L~~~g-----------------~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~  487 (506)
T KOG0289|consen  429 LD----EKKEVNSLSFDQSGTYLGIAG-----------------SDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEH  487 (506)
T ss_pred             cc----ccccceeEEEcCCCCeEEeec-----------------ceeEEEEEecccccceeeehhhhcccccceeeeccc
Confidence            21    123578999999998666421                 3446888887666665542   22234678888765


Q ss_pred             CCEEEEEeCCCCeEEEE
Q 017371          230 EDYVVVCESWKFRCRKY  246 (372)
Q Consensus       230 g~~l~v~~~~~~~i~~~  246 (372)
                      -  .|++.++.+++.++
T Consensus       488 a--q~l~s~smd~~l~~  502 (506)
T KOG0289|consen  488 A--QYLASTSMDAILRL  502 (506)
T ss_pred             c--eEEeeccchhheEE
Confidence            4  45555566666654

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=96.33  E-value=0.85  Score=41.97  Aligned_cols=145  Identities=11%  Similarity=0.057  Sum_probs=81.4

Q ss_pred             cEEEcCCCcEEEEe-cCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCCEEEEeCCCcEEEE-c-CCC--cEEEeeec
Q 017371           83 DASMDKNGVIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKV-S-EDG--VENFLSYV  155 (372)
Q Consensus        83 ~i~~d~~G~l~v~~-~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~-~-~~g--~~~l~~~~  155 (372)
                      .++..|+.++.++. .|..-+.|+  +|++-.-..........+.|..||.+..+..-.|.+++ . .+|  ...+... 
T Consensus        69 avsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e-  147 (399)
T KOG0296|consen   69 AVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQE-  147 (399)
T ss_pred             EEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecc-
Confidence            46666754444332 444455555  56532222222233337888899987776544564444 4 455  2223211 


Q ss_pred             CCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcce-EEEecCCCEEE
Q 017371          156 NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANG-VALSRDEDYVV  234 (372)
Q Consensus       156 ~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~g-i~~~~dg~~l~  234 (372)
                          ...+.-|...|.+.|.++                 +..+|.||.+....+....+..+...|-- =.|.|||+.+.
T Consensus       148 ----~~dieWl~WHp~a~illA-----------------G~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~  206 (399)
T KOG0296|consen  148 ----VEDIEWLKWHPRAHILLA-----------------GSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRIL  206 (399)
T ss_pred             ----cCceEEEEecccccEEEe-----------------ecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEE
Confidence                123345666777777664                 44678888887665455555555444322 24789999666


Q ss_pred             EEeCCCCeEEEEEccC
Q 017371          235 VCESWKFRCRKYWLKG  250 (372)
Q Consensus       235 v~~~~~~~i~~~~~~g  250 (372)
                      .... +..|..+++.+
T Consensus       207 tgy~-dgti~~Wn~kt  221 (399)
T KOG0296|consen  207 TGYD-DGTIIVWNPKT  221 (399)
T ss_pred             EEec-CceEEEEecCC
Confidence            5554 66788887754

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=96.31  E-value=0.2  Score=45.96  Aligned_cols=179  Identities=14%  Similarity=0.127  Sum_probs=93.5

Q ss_pred             CCCCCCCccEEEcCCC--cEEEEecCCeEEEEe-CC--ceEEEEecCCCcccCeEEcCCCCEEEEeCCCcEEEEcCCC--
Q 017371           75 EGSVNHPEDASMDKNG--VIYTATRDGWIKRLQ-DG--TWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDG--  147 (372)
Q Consensus        75 ~g~~~~p~~i~~d~~G--~l~v~~~~g~i~~~~-~g--~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~~~g--  147 (372)
                      .|.-.|..++|-.++-  .+..|..||.|.-|+ ..  ....+..-.|... ||+++....+++++ ++.|-.+.-+|  
T Consensus        63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~-Gi~v~~~~~~tvgd-DKtvK~wk~~~~p  140 (433)
T KOG0268|consen   63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVR-GICVTQTSFFTVGD-DKTVKQWKIDGPP  140 (433)
T ss_pred             cccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCcee-eEEecccceEEecC-CcceeeeeccCCc
Confidence            4555677888888765  566677899999998 33  3444444445566 99999744455554 34455554333  


Q ss_pred             cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCe-EEEEeCCccCcceEEE
Q 017371          148 VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI-TTLVADGFYFANGVAL  226 (372)
Q Consensus       148 ~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~-~~~~~~~~~~~~gi~~  226 (372)
                      ...+...      ....+|.-...+.++.|                   ....|-.+|..... +..+..+...-..+-+
T Consensus       141 ~~tilg~------s~~~gIdh~~~~~~FaT-------------------cGe~i~IWD~~R~~Pv~smswG~Dti~svkf  195 (433)
T KOG0268|consen  141 LHTILGK------SVYLGIDHHRKNSVFAT-------------------CGEQIDIWDEQRDNPVSSMSWGADSISSVKF  195 (433)
T ss_pred             ceeeecc------ccccccccccccccccc-------------------cCceeeecccccCCccceeecCCCceeEEec
Confidence            2222110      01123333233333332                   11223444432111 1112223222245667


Q ss_pred             ecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 017371          227 SRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       227 ~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~  284 (372)
                      .|-...++.+......|..||+...+.-. .+..   .-.++.|+..|++..+++...
T Consensus       196 NpvETsILas~~sDrsIvLyD~R~~~Pl~-KVi~---~mRTN~IswnPeafnF~~a~E  249 (433)
T KOG0268|consen  196 NPVETSILASCASDRSIVLYDLRQASPLK-KVIL---TMRTNTICWNPEAFNFVAANE  249 (433)
T ss_pred             CCCcchheeeeccCCceEEEecccCCccc-eeee---eccccceecCccccceeeccc
Confidence            77777677776667779999986432111 1111   113677888887766666544

>COG3211 PhoX Predicted phosphatase [General function prediction only]

Probab=96.30  E-value=0.046  Score=53.11  Aligned_cols=73  Identities=16%  Similarity=0.132  Sum_probs=44.6

Q ss_pred             ccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCcc--CcceEEEecCCCEEEEE
Q 017371          159 KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFY--FANGVALSRDEDYVVVC  236 (372)
Q Consensus       159 ~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~--~~~gi~~~~dg~~l~v~  236 (372)
                      -+..|.+|++|+.|+||+......=...+.    ..  +-..+..=|+.+++++.+..+-.  .-.|.+|+||++.+||.
T Consensus       498 ~f~~PDnl~fD~~GrLWi~TDg~~s~~~~~----~~--G~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~TlFV~  571 (616)
T COG3211         498 WFNSPDNLAFDPWGRLWIQTDGSGSTLRNR----FR--GVTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTLFVN  571 (616)
T ss_pred             cccCCCceEECCCCCEEEEecCCCCccCcc----cc--cccccccCCCccceeeeeccCCCcceeecceeCCCCceEEEE
Confidence            456799999999999999865311000000    00  11123334566677666554322  34589999999999986


Q ss_pred             e
Q 017371          237 E  237 (372)
Q Consensus       237 ~  237 (372)
                      -
T Consensus       572 v  572 (616)
T COG3211         572 V  572 (616)
T ss_pred             e
Confidence            4

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=96.29  E-value=0.22  Score=44.93  Aligned_cols=152  Identities=14%  Similarity=0.158  Sum_probs=79.0

Q ss_pred             CCCCCCCccEEEcCCCcEEE-EecCCeEEEEe--CCceEEEEe---c-----CCCcccCeEEcCCCCEEEEeCCCc-EEE
Q 017371           75 EGSVNHPEDASMDKNGVIYT-ATRDGWIKRLQ--DGTWVNWKF---I-----DSQTLVGLTSTKEGHLIICDNANG-LHK  142 (372)
Q Consensus        75 ~g~~~~p~~i~~d~~G~l~v-~~~~g~i~~~~--~g~~~~~~~---~-----~~~p~~gl~~d~dG~l~v~~~~~g-v~~  142 (372)
                      -|.-..+|+..+.|||...+ |+.||.|-.|+  +|+++.-..   .     ...+...+.|..|..+..+.+..| +..
T Consensus       210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKv  289 (508)
T KOG0275|consen  210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKV  289 (508)
T ss_pred             cccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEE
Confidence            35557899999999996554 55899999998  776553110   0     012222666666665544433333 222


Q ss_pred             Ec-CCC--cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEe-CCCCeEEEEeC-C
Q 017371          143 VS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYD-PSSNITTLVAD-G  217 (372)
Q Consensus       143 ~~-~~g--~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d-~~t~~~~~~~~-~  217 (372)
                      +. .+|  ++.+..    .....+..+.+..|+.-..+.+                 .+ ...|+. .++|+.-.-.. .
T Consensus       290 Wri~tG~ClRrFdr----AHtkGvt~l~FSrD~SqiLS~s-----------------fD-~tvRiHGlKSGK~LKEfrGH  347 (508)
T KOG0275|consen  290 WRIETGQCLRRFDR----AHTKGVTCLSFSRDNSQILSAS-----------------FD-QTVRIHGLKSGKCLKEFRGH  347 (508)
T ss_pred             EEEecchHHHHhhh----hhccCeeEEEEccCcchhhccc-----------------cc-ceEEEeccccchhHHHhcCc
Confidence            22 334  332210    1112344566777764333322                 11 223332 23343222122 2


Q ss_pred             ccCcceEEEecCCCEEEEEeCCCCeEEEEEcc
Q 017371          218 FYFANGVALSRDEDYVVVCESWKFRCRKYWLK  249 (372)
Q Consensus       218 ~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~  249 (372)
                      ..+-|-..+++||.+++-+. .+..|..++.+
T Consensus       348 sSyvn~a~ft~dG~~iisaS-sDgtvkvW~~K  378 (508)
T KOG0275|consen  348 SSYVNEATFTDDGHHIISAS-SDGTVKVWHGK  378 (508)
T ss_pred             cccccceEEcCCCCeEEEec-CCccEEEecCc
Confidence            34567788999998666554 45556655543

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=96.24  E-value=0.45  Score=47.07  Aligned_cols=151  Identities=19%  Similarity=0.206  Sum_probs=83.7

Q ss_pred             cEEEcCCCcEE-EEe-cCCeEEEEe-CCceEEEE--e--cCCCcccCeEEcCCCC-EEEEe-CCCcEEEEc-CCC-cEEE
Q 017371           83 DASMDKNGVIY-TAT-RDGWIKRLQ-DGTWVNWK--F--IDSQTLVGLTSTKEGH-LIICD-NANGLHKVS-EDG-VENF  151 (372)
Q Consensus        83 ~i~~d~~G~l~-v~~-~~g~i~~~~-~g~~~~~~--~--~~~~p~~gl~~d~dG~-l~v~~-~~~gv~~~~-~~g-~~~l  151 (372)
                      +-++.|+|++. +++ ..=+|+++. ++.++...  .  ....+...+.+.-|++ ++++. ....+..++ ... ...+
T Consensus       387 ~~aiSPdg~~Ia~st~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel  466 (691)
T KOG2048|consen  387 CAAISPDGNLIAISTVSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKEL  466 (691)
T ss_pred             eeccCCCCCEEEEeeccceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhh
Confidence            45666788654 444 566788887 55433221  1  1111111444444443 33333 223466666 333 2222


Q ss_pred             eeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcc-eEEEecC-
Q 017371          152 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFAN-GVALSRD-  229 (372)
Q Consensus       152 ~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~-gi~~~~d-  229 (372)
                      ....+...-..+..|++.++|+ |++..+                ..|.|+.|+.++++.+.+...+..+. ..+++|. 
T Consensus       467 ~~~~~~~~~~~I~~l~~SsdG~-yiaa~~----------------t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~  529 (691)
T KOG2048|consen  467 KSIQSQAKCPSISRLVVSSDGN-YIAAIS----------------TRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFV  529 (691)
T ss_pred             hccccccCCCcceeEEEcCCCC-EEEEEe----------------ccceEEEEEcccceeecchhccCcceeeeeccccc
Confidence            2221222334677899999997 443322                57889999999888887765554432 4556754 


Q ss_pred             CCEEEEEeCCCCeEEEEEccCC
Q 017371          230 EDYVVVCESWKFRCRKYWLKGE  251 (372)
Q Consensus       230 g~~l~v~~~~~~~i~~~~~~g~  251 (372)
                      .+.+.++ +.++.++-|++...
T Consensus       530 ~~~lvva-ts~nQv~efdi~~~  550 (691)
T KOG2048|consen  530 RNRLVVA-TSNNQVFEFDIEAR  550 (691)
T ss_pred             cCcEEEE-ecCCeEEEEecchh
Confidence            4445555 45778999998543

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=96.24  E-value=0.89  Score=41.23  Aligned_cols=144  Identities=11%  Similarity=0.110  Sum_probs=74.0

Q ss_pred             CCCccEEEcCCCcEEE-EecCCeEEEEe-CC----ce--EEEEecCCCcccCeEEcCCCCEEEEeCC--Cc--EEEEc--
Q 017371           79 NHPEDASMDKNGVIYT-ATRDGWIKRLQ-DG----TW--VNWKFIDSQTLVGLTSTKEGHLIICDNA--NG--LHKVS--  144 (372)
Q Consensus        79 ~~p~~i~~d~~G~l~v-~~~~g~i~~~~-~g----~~--~~~~~~~~~p~~gl~~d~dG~l~v~~~~--~g--v~~~~--  144 (372)
                      ....++++.+||.-+. ...|+.|..|+ +.    +.  -+..-..+.|. -++|.||-+-+|..-.  ..  ++..+  
T Consensus        87 ~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT-~V~FapDc~s~vv~~~~g~~l~vyk~~K~  165 (420)
T KOG2096|consen   87 KEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPT-RVVFAPDCKSVVVSVKRGNKLCVYKLVKK  165 (420)
T ss_pred             CceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCce-EEEECCCcceEEEEEccCCEEEEEEeeec
Confidence            4677899999995444 44777777776 21    11  11122456888 8999988763333222  22  44444  


Q ss_pred             CCC-cEE--Eeee-cCCccccccc--ceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCc
Q 017371          145 EDG-VEN--FLSY-VNGSKLRFAN--DVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF  218 (372)
Q Consensus       145 ~~g-~~~--l~~~-~~~~~~~~~~--~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~  218 (372)
                      .+| ...  +... ..-..-+...  ++-+. ++..|+...+                ....|+.++.+......+.++.
T Consensus       166 ~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA-~~~k~imsas----------------~dt~i~lw~lkGq~L~~idtnq  228 (420)
T KOG2096|consen  166 TDGSGSHHFVHIDNLEFERKHQVDIINIGIA-GNAKYIMSAS----------------LDTKICLWDLKGQLLQSIDTNQ  228 (420)
T ss_pred             ccCCCCcccccccccccchhcccceEEEeec-CCceEEEEec----------------CCCcEEEEecCCceeeeecccc
Confidence            345 211  1111 1111111111  23332 3444554332                3456888888733333333333


Q ss_pred             cCcceEEEecCCCEEEEEeCCC
Q 017371          219 YFANGVALSRDEDYVVVCESWK  240 (372)
Q Consensus       219 ~~~~gi~~~~dg~~l~v~~~~~  240 (372)
                      ....-.+++|+|+++.++..+-
T Consensus       229 ~~n~~aavSP~GRFia~~gFTp  250 (420)
T KOG2096|consen  229 SSNYDAAVSPDGRFIAVSGFTP  250 (420)
T ss_pred             ccccceeeCCCCcEEEEecCCC
Confidence            3334467999999887776543

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=96.23  E-value=1.2  Score=42.68  Aligned_cols=128  Identities=9%  Similarity=-0.061  Sum_probs=64.8

Q ss_pred             CCeEEEEeCCCCe-EEEEeC-CccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeecc---C-CCCCCceeE
Q 017371          198 HGQLLKYDPSSNI-TTLVAD-GFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAE---N-LPGAPDNIN  271 (372)
Q Consensus       198 ~g~v~~~d~~t~~-~~~~~~-~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~---~-~~g~p~~i~  271 (372)
                      .|.+++-+...+. .+.+.. ....-.++.+.+|++ +|++.. ...+++-.-.+. ..+...|..   . ....+.++.
T Consensus       258 ~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~-l~l~g~-~G~l~~S~d~G~-~~~~~~f~~~~~~~~~~~l~~v~  334 (398)
T PLN00033        258 RGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGG-LWLLTR-GGGLYVSKGTGL-TEEDFDFEEADIKSRGFGILDVG  334 (398)
T ss_pred             CccEEEecCCCCcceEEecCCCccceeeeeEcCCCC-EEEEeC-CceEEEecCCCC-cccccceeecccCCCCcceEEEE
Confidence            4556654433222 233221 122235677888887 555543 344655443332 111101211   1 111245577


Q ss_pred             EcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEECCCCcEEEEEECCCCCeeccceeeEE
Q 017371          272 LAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQ  351 (372)
Q Consensus       272 ~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~  351 (372)
                      ..+++++|++...                                   |.+++-...|+--......++. ......+.+
T Consensus       335 ~~~d~~~~a~G~~-----------------------------------G~v~~s~D~G~tW~~~~~~~~~-~~~ly~v~f  378 (398)
T PLN00033        335 YRSKKEAWAAGGS-----------------------------------GILLRSTDGGKSWKRDKGADNI-AANLYSVKF  378 (398)
T ss_pred             EcCCCcEEEEECC-----------------------------------CcEEEeCCCCcceeEccccCCC-CcceeEEEE
Confidence            8889999998876                                   4555555556553332212221 123456775


Q ss_pred             E-CCEEEEEeCCCC
Q 017371          352 V-DNHLYVISLTSN  364 (372)
Q Consensus       352 ~-~g~L~igs~~~~  364 (372)
                      . +++.|+...++-
T Consensus       379 ~~~~~g~~~G~~G~  392 (398)
T PLN00033        379 FDDKKGFVLGNDGV  392 (398)
T ss_pred             cCCCceEEEeCCcE
Confidence            4 589999987654

>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A

Probab=96.23  E-value=0.016  Score=50.26  Aligned_cols=123  Identities=20%  Similarity=0.218  Sum_probs=65.9

Q ss_pred             cccccCceEecCCCCCCCccEEEcCCCcEEEEecCCeEEEEe---CCc-------eEEE-EecCCCcccCeEEcCCCCEE
Q 017371           64 ATQLQDFIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQ---DGT-------WVNW-KFIDSQTLVGLTSTKEGHLI  132 (372)
Q Consensus        64 ~~~l~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~g~i~~~~---~g~-------~~~~-~~~~~~p~~gl~~d~dG~l~  132 (372)
                      ++.....+.|..|....=..|++|+.|.||.-+.+|.|+|..   ++.       .+.+ ...-+... .+.++++|.||
T Consensus        66 ~~~~~~~~~Ig~g~W~~F~~i~~d~~G~LYaV~~~G~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~-~vfa~~~GvLY  144 (229)
T PF14517_consen   66 NTWDSGSKQIGDGGWNSFKFIFFDPTGVLYAVTPDGKLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFD-AVFAGPNGVLY  144 (229)
T ss_dssp             --HHHH-EEEE-S-GGG-SEEEE-TTS-EEEEETT-EEEEES---STT--HHH-HSEEEE-SSGGGEE-EEEE-TTS-EE
T ss_pred             ccccccCcccccCcccceeEEEecCCccEEEeccccceeeccCCCccCcchhhccceecccCCCccce-EEEeCCCccEE
Confidence            344456677887733333489999999999999999999987   221       1222 12223344 68889999999


Q ss_pred             EEeCCCcEEEEc-CCC-------cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEE
Q 017371          133 ICDNANGLHKVS-EDG-------VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKY  204 (372)
Q Consensus       133 v~~~~~gv~~~~-~~g-------~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~  204 (372)
                      ..+....+++.. +++       ...+..   +........|.+.++|+||..+                  .+|.|||+
T Consensus       145 ~i~~dg~~~~~~~p~~~~~~W~~~s~~v~---~~gw~~~~~i~~~~~g~L~~V~------------------~~G~lyr~  203 (229)
T PF14517_consen  145 AITPDGRLYRRYRPDGGSDRWLSGSGLVG---GGGWDSFHFIFFSPDGNLWAVK------------------SNGKLYRG  203 (229)
T ss_dssp             EEETTE-EEEE---SSTT--HHHH-EEEE---SSSGGGEEEEEE-TTS-EEEE-------------------ETTEEEEE
T ss_pred             EEcCCCceEEeCCCCCCCCccccccceec---cCCcccceEEeeCCCCcEEEEe------------------cCCEEecc
Confidence            998654477764 322       111211   1112234568888999999853                  46889998


Q ss_pred             eCCC
Q 017371          205 DPSS  208 (372)
Q Consensus       205 d~~t  208 (372)
                      .+.+
T Consensus       204 ~~p~  207 (229)
T PF14517_consen  204 RPPQ  207 (229)
T ss_dssp             S---
T ss_pred             CCcc
Confidence            7654

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=96.22  E-value=0.46  Score=47.69  Aligned_cols=185  Identities=11%  Similarity=0.058  Sum_probs=101.5

Q ss_pred             EEEcCCCcEEEEe-cCCeEEEEe-CC-ceEEEEecCCCcccCeEEcCCCCEEEEeCCCc---EEEEcCCC-cEEEeeecC
Q 017371           84 ASMDKNGVIYTAT-RDGWIKRLQ-DG-TWVNWKFIDSQTLVGLTSTKEGHLIICDNANG---LHKVSEDG-VENFLSYVN  156 (372)
Q Consensus        84 i~~d~~G~l~v~~-~~g~i~~~~-~g-~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~g---v~~~~~~g-~~~l~~~~~  156 (372)
                      ..+.|+.++.+.. .|+.+.-|. +- .-...-.+...|.-.+.|.|-|--|++..+.+   ++..|... .++++..  
T Consensus       457 ~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifagh--  534 (707)
T KOG0263|consen  457 CSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGH--  534 (707)
T ss_pred             eeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhccc--
Confidence            4455665555554 455554444 21 11111112233432466777776555543333   33333222 4433222  


Q ss_pred             CcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcc-eEEEecCCCEEEE
Q 017371          157 GSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFAN-GVALSRDEDYVVV  235 (372)
Q Consensus       157 ~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~-gi~~~~dg~~l~v  235 (372)
                         ..-..-+.+.|+.+...|- |                .+..|..+|..+|....+..+...|. .++++|+|++|- 
T Consensus       535 ---lsDV~cv~FHPNs~Y~aTG-S----------------sD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~La-  593 (707)
T KOG0263|consen  535 ---LSDVDCVSFHPNSNYVATG-S----------------SDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLA-  593 (707)
T ss_pred             ---ccccceEEECCcccccccC-C----------------CCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEe-
Confidence               2234457888888754442 2                34556667777787777777766664 688999998554 


Q ss_pred             EeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEecC-chhHHHHhh
Q 017371          236 CESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKL-DARRMKILN  294 (372)
Q Consensus       236 ~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~-~~~~~~~~~  294 (372)
                      +....+.|..+++.+.+.  ...+..+ .+....+.+..||++.++.... ....||+..
T Consensus       594 Sg~ed~~I~iWDl~~~~~--v~~l~~H-t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  594 SGDEDGLIKIWDLANGSL--VKQLKGH-TGTIYSLSFSRDGNVLASGGADNSVRLWDLTK  650 (707)
T ss_pred             ecccCCcEEEEEcCCCcc--hhhhhcc-cCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence            444456677777755321  1122222 4456788999999999988653 234555544

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=96.19  E-value=0.18  Score=50.90  Aligned_cols=180  Identities=12%  Similarity=0.125  Sum_probs=99.8

Q ss_pred             CCccEEEcCCCc-EEEEecCCeEEEEe--CCceE-EEE--ecCCCcccCeEEcCCCCEEEEeCCCcEEEEc-CCCcEEEe
Q 017371           80 HPEDASMDKNGV-IYTATRDGWIKRLQ--DGTWV-NWK--FIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDGVENFL  152 (372)
Q Consensus        80 ~p~~i~~d~~G~-l~v~~~~g~i~~~~--~g~~~-~~~--~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~-~~g~~~l~  152 (372)
                      ...+++++.=|+ .++|...|.|-+|+  .|..+ .+.  .....+..|+++|.-+++.|+....|++.+- -.+.. +.
T Consensus       450 ~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~-l~  528 (910)
T KOG1539|consen  450 NATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV-LK  528 (910)
T ss_pred             ceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcc-ee
Confidence            345677777664 56777899999998  55332 221  1122343399999989999988778887765 22211 11


Q ss_pred             eecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCC-ccCcceEEEecCCC
Q 017371          153 SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSRDED  231 (372)
Q Consensus       153 ~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~-~~~~~gi~~~~dg~  231 (372)
                      ......  ..+..+.......+.+.                 ....-.|..||..|.++.....+ -..-+.++|+|||+
T Consensus       529 ~~l~l~--~~~~~iv~hr~s~l~a~-----------------~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~Dgr  589 (910)
T KOG1539|consen  529 KSLRLG--SSITGIVYHRVSDLLAI-----------------ALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGR  589 (910)
T ss_pred             eeeccC--CCcceeeeeehhhhhhh-----------------hcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCc
Confidence            111100  12223333222222211                 11233577888765554333332 33457899999999


Q ss_pred             EEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 017371          232 YVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       232 ~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~  284 (372)
                      ++..+.. +..|..||+.....-  ..+.  ...-+-++.+.+.|.+..+...
T Consensus       590 Wlisasm-D~tIr~wDlpt~~lI--D~~~--vd~~~~sls~SPngD~LAT~Hv  637 (910)
T KOG1539|consen  590 WLISASM-DSTIRTWDLPTGTLI--DGLL--VDSPCTSLSFSPNGDFLATVHV  637 (910)
T ss_pred             EEEEeec-CCcEEEEeccCccee--eeEe--cCCcceeeEECCCCCEEEEEEe
Confidence            8877764 567888888654222  1221  1112456666777765555443

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=96.19  E-value=0.35  Score=48.74  Aligned_cols=146  Identities=14%  Similarity=0.113  Sum_probs=83.7

Q ss_pred             CeEEcCCCCEEEEeCCCcEEEEc--CCC-cEEEeeecCCcccccccceEEcc-CCcEEEEeCCCCCCCcccccccccccC
Q 017371          122 GLTSTKEGHLIICDNANGLHKVS--EDG-VENFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKP  197 (372)
Q Consensus       122 gl~~d~dG~l~v~~~~~gv~~~~--~~g-~~~l~~~~~~~~~~~~~~l~~d~-dG~i~vtd~~~~~~~~~~~~~~~~~~~  197 (372)
                      .|.+.+++-|+-+..++-|..+.  .+. +..+.+.      .++..++|.| |.+.+++                 +.-
T Consensus       374 DlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~Hn------dfVTcVaFnPvDDryFiS-----------------GSL  430 (712)
T KOG0283|consen  374 DLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFSHN------DFVTCVAFNPVDDRYFIS-----------------GSL  430 (712)
T ss_pred             ecccccCCeeEeccccccEEeecCCCcceeeEEecC------CeeEEEEecccCCCcEee-----------------ccc
Confidence            67777777666665555555555  233 5555432      3566788887 4566665                 224


Q ss_pred             CCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccC----C-CCCCceeEE
Q 017371          198 HGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAEN----L-PGAPDNINL  272 (372)
Q Consensus       198 ~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~----~-~g~p~~i~~  272 (372)
                      +|.+..++....++....+--..-..+++.|||++.+|.. .++.+..|+..+.+......+...    . .+...|+.+
T Consensus       431 D~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt-~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~  509 (712)
T KOG0283|consen  431 DGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGT-FNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQF  509 (712)
T ss_pred             ccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEE-eccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEe
Confidence            5555555554455544444334456899999999666654 566788888777643332211111    1 113455555


Q ss_pred             cCCC--CEEEEEecCchhHHH
Q 017371          273 APDG--TFWIAIIKLDARRMK  291 (372)
Q Consensus       273 d~~G--~lwva~~~~~~~~~~  291 (372)
                      .+..  .+.|++...|..++|
T Consensus       510 ~p~~~~~vLVTSnDSrIRI~d  530 (712)
T KOG0283|consen  510 FPGDPDEVLVTSNDSRIRIYD  530 (712)
T ss_pred             cCCCCCeEEEecCCCceEEEe
Confidence            4322  588888876544433

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.06  E-value=0.7  Score=44.07  Aligned_cols=192  Identities=13%  Similarity=0.067  Sum_probs=88.2

Q ss_pred             CCcEEEEe-cCCeEEEEe-C-C--c--eEEEEe--------cCCCcccCeEEcCCCCEEEEeCC-------CcEEEEcCC
Q 017371           89 NGVIYTAT-RDGWIKRLQ-D-G--T--WVNWKF--------IDSQTLVGLTSTKEGHLIICDNA-------NGLHKVSED  146 (372)
Q Consensus        89 ~G~l~v~~-~~g~i~~~~-~-g--~--~~~~~~--------~~~~p~~gl~~d~dG~l~v~~~~-------~gv~~~~~~  146 (372)
                      ..+|++.. ..++|+.+| . .  +  +..+..        ....|. -....++|+++|+..+       .|++.+|.+
T Consensus        87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PH-T~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPH-TVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEE-EEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCc-eeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            34788877 788999999 2 1  2  222221        224566 5666789999987532       258888855


Q ss_pred             CcEEEee-ecCCcccccccceEEccCCcEEEEeCCCCCCCccc------ccccccccCCCeEEEEeCCCCeEEEEeCCc-
Q 017371          147 GVENFLS-YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEY------CLDILEGKPHGQLLKYDPSSNITTLVADGF-  218 (372)
Q Consensus       147 g~~~l~~-~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~------~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~-  218 (372)
                      .+++... ..+.....+-.++-..+..++.+|.+   |+.-..      ..++..+.-..+|..+|-.+.+.....+-- 
T Consensus       166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSe---Wg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~  242 (461)
T PF05694_consen  166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSE---WGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGE  242 (461)
T ss_dssp             T--EEEE--SB-TT------EEEETTTTEEEE-B------HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-T
T ss_pred             cccccceeccCCCCCCCCCCeEEcCCCCEEEEec---cCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCC
Confidence            4333322 11222335667888888888888753   332211      122233333457889998877776654322 


Q ss_pred             --cCcceEE--EecCCCEEEEEeCCCCeEEEEEccCCCCcceeeecc------------C-------CCCCCceeEEcCC
Q 017371          219 --YFANGVA--LSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAE------------N-------LPGAPDNINLAPD  275 (372)
Q Consensus       219 --~~~~gi~--~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~------------~-------~~g~p~~i~~d~~  275 (372)
                        ..|--|.  .+|+..+=|+.......|++|..+....-..+..++            .       .|+++..|.+.-|
T Consensus       243 ~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlD  322 (461)
T PF05694_consen  243 EGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLD  322 (461)
T ss_dssp             TEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TT
T ss_pred             CCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccC
Confidence              1222233  345666777766667789988763221111111111            0       1566788888777


Q ss_pred             C-CEEEEEec
Q 017371          276 G-TFWIAIIK  284 (372)
Q Consensus       276 G-~lwva~~~  284 (372)
                      . .|||+++.
T Consensus       323 DrfLYvs~W~  332 (461)
T PF05694_consen  323 DRFLYVSNWL  332 (461)
T ss_dssp             S-EEEEEETT
T ss_pred             CCEEEEEccc
Confidence            7 69999998

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=96.06  E-value=0.7  Score=42.58  Aligned_cols=104  Identities=15%  Similarity=0.177  Sum_probs=67.4

Q ss_pred             ccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEe-CCccCcceEEEecCCCEEEEEeCC
Q 017371          161 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDEDYVVVCESW  239 (372)
Q Consensus       161 ~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~-~~~~~~~gi~~~~dg~~l~v~~~~  239 (372)
                      ..+..|...+||.+|++-+-                .+..+...|+++++...+. .++..-.-+.|+|||.+++.+.. 
T Consensus       196 ~pVtsmqwn~dgt~l~tAS~----------------gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~-  258 (445)
T KOG2139|consen  196 NPVTSMQWNEDGTILVTASF----------------GSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATC-  258 (445)
T ss_pred             ceeeEEEEcCCCCEEeeccc----------------CcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecc-
Confidence            45567888899999998552                4557888899988766654 33333334679999997776643 


Q ss_pred             CCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCC-EEEEEec
Q 017371          240 KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIK  284 (372)
Q Consensus       240 ~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwva~~~  284 (372)
                       ++++++|.... ....+.+. ..+|...+-+-+++|. |.++..+
T Consensus       259 -davfrlw~e~q-~wt~erw~-lgsgrvqtacWspcGsfLLf~~sg  301 (445)
T KOG2139|consen  259 -DAVFRLWQENQ-SWTKERWI-LGSGRVQTACWSPCGSFLLFACSG  301 (445)
T ss_pred             -cceeeeehhcc-cceeccee-ccCCceeeeeecCCCCEEEEEEcC
Confidence             46888884332 22334443 3445666777899995 4555443

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=96.01  E-value=0.27  Score=47.20  Aligned_cols=142  Identities=14%  Similarity=0.110  Sum_probs=77.9

Q ss_pred             CeEEcCCCCEEEE-eCCCcEEEEcCCC----cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCccccccccccc
Q 017371          122 GLTSTKEGHLIIC-DNANGLHKVSEDG----VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGK  196 (372)
Q Consensus       122 gl~~d~dG~l~v~-~~~~gv~~~~~~g----~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~  196 (372)
                      .+++|+.|.-+++ ..+.-+..+|=+|    .+.+....+. ..+.++.+.+.+.|.-++.-+                 
T Consensus       172 al~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~-E~h~i~sl~ys~Tg~~iLvvs-----------------  233 (641)
T KOG0772|consen  172 ALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPC-ETHQINSLQYSVTGDQILVVS-----------------  233 (641)
T ss_pred             EeeecCCCceeeeccccceEEEEecccccccchhhhccCcc-cccccceeeecCCCCeEEEEe-----------------
Confidence            8999999955554 3345677777333    2222211122 235677888887775443322                 


Q ss_pred             CCCeEEEEeCCCCeEEEEeCC------ccC-------cceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCC
Q 017371          197 PHGQLLKYDPSSNITTLVADG------FYF-------ANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENL  263 (372)
Q Consensus       197 ~~g~v~~~d~~t~~~~~~~~~------~~~-------~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~  263 (372)
                      ++.....+|-+..++.....+      +..       -+..+|+|+.+..+.+.+....+..++++..+ .+.+++....
T Consensus       234 g~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k-~q~qVik~k~  312 (641)
T KOG0772|consen  234 GSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTK-SQLQVIKTKP  312 (641)
T ss_pred             cCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCch-hheeEEeecc
Confidence            223334445443333222222      111       23457899988888877767666666665543 5555554332


Q ss_pred             CC----CCceeEEcCCCCEEEEE
Q 017371          264 PG----APDNINLAPDGTFWIAI  282 (372)
Q Consensus       264 ~g----~p~~i~~d~~G~lwva~  282 (372)
                      .+    .|...+.++||++..+.
T Consensus       313 ~~g~Rv~~tsC~~nrdg~~iAag  335 (641)
T KOG0772|consen  313 AGGKRVPVTSCAWNRDGKLIAAG  335 (641)
T ss_pred             CCCcccCceeeecCCCcchhhhc
Confidence            22    24557789999874443

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=95.97  E-value=0.72  Score=43.71  Aligned_cols=148  Identities=18%  Similarity=0.129  Sum_probs=82.3

Q ss_pred             ccEEEcCCCcEEEEe-cCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCCEEEEeCCCc-EEEEc-C-------CC-c
Q 017371           82 EDASMDKNGVIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANG-LHKVS-E-------DG-V  148 (372)
Q Consensus        82 ~~i~~d~~G~l~v~~-~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~g-v~~~~-~-------~g-~  148 (372)
                      .+++-+++|+..++. ..|.||.|.  .|+.-.+....=++++.|.|..||..+++....| |+.+. -       ++ .
T Consensus        85 ~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~  164 (476)
T KOG0646|consen   85 HALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSV  164 (476)
T ss_pred             eeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCc
Confidence            457777899777776 788999998  6753222111112333788888898888866554 44333 0       11 1


Q ss_pred             EEEeeecCCcccccccceEEccCC---cEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEE
Q 017371          149 ENFLSYVNGSKLRFANDVVEASDG---SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVA  225 (372)
Q Consensus       149 ~~l~~~~~~~~~~~~~~l~~d~dG---~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~  225 (372)
                      ..+... .+- ...+.++.++..|   ++|-                  ...+..+..+|...|..-.-..--..++.++
T Consensus       165 ~p~~~f-~~H-tlsITDl~ig~Gg~~~rl~T------------------aS~D~t~k~wdlS~g~LLlti~fp~si~av~  224 (476)
T KOG0646|consen  165 KPLHIF-SDH-TLSITDLQIGSGGTNARLYT------------------ASEDRTIKLWDLSLGVLLLTITFPSSIKAVA  224 (476)
T ss_pred             cceeee-ccC-cceeEEEEecCCCccceEEE------------------ecCCceEEEEEeccceeeEEEecCCcceeEE
Confidence            111100 000 0123344444332   3332                  2244556667777675443333334457899


Q ss_pred             EecCCCEEEEEeCCCCeEEEEEccC
Q 017371          226 LSRDEDYVVVCESWKFRCRKYWLKG  250 (372)
Q Consensus       226 ~~~dg~~l~v~~~~~~~i~~~~~~g  250 (372)
                      ++|-++.+|+.. ..+.|+.+.+.+
T Consensus       225 lDpae~~~yiGt-~~G~I~~~~~~~  248 (476)
T KOG0646|consen  225 LDPAERVVYIGT-EEGKIFQNLLFK  248 (476)
T ss_pred             EcccccEEEecC-CcceEEeeehhc
Confidence            999998777765 456788776643

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=95.97  E-value=0.56  Score=43.89  Aligned_cols=149  Identities=11%  Similarity=0.079  Sum_probs=82.2

Q ss_pred             CccEEEcCCCcEEEEe-cCCeEEEEe--CCce-EEEEecCCCcccCeEEcCCCCEEEEeC-CCcEEEEcCCC--cEEEee
Q 017371           81 PEDASMDKNGVIYTAT-RDGWIKRLQ--DGTW-VNWKFIDSQTLVGLTSTKEGHLIICDN-ANGLHKVSEDG--VENFLS  153 (372)
Q Consensus        81 p~~i~~d~~G~l~v~~-~~g~i~~~~--~g~~-~~~~~~~~~p~~gl~~d~dG~l~v~~~-~~gv~~~~~~g--~~~l~~  153 (372)
                      ..-|...||.+-.++. .+--+..+|  .|.. ..+....+....+.++-|||.=+|+.. ++++..++.+|  ...+  
T Consensus       272 V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W--  349 (519)
T KOG0293|consen  272 VSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNW--  349 (519)
T ss_pred             eEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcc--
Confidence            3346666666544444 333355555  4443 223333233322788889996566644 46788888666  2222  


Q ss_pred             ecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEE
Q 017371          154 YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYV  233 (372)
Q Consensus       154 ~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l  233 (372)
                        .+.+...+.++++.+||+-.++..                 .+..+..|+..+..-.-+.+.-..-..+.++.|+++.
T Consensus       350 --~gvr~~~v~dlait~Dgk~vl~v~-----------------~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~  410 (519)
T KOG0293|consen  350 --EGVRDPKVHDLAITYDGKYVLLVT-----------------VDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLA  410 (519)
T ss_pred             --cccccceeEEEEEcCCCcEEEEEe-----------------cccceeeechhhhhhhccccccCceeEEEEcCCCcEE
Confidence              343334577999999996333311                 2334555654422211122222333568899999855


Q ss_pred             EEEeCCCCeEEEEEccCC
Q 017371          234 VVCESWKFRCRKYWLKGE  251 (372)
Q Consensus       234 ~v~~~~~~~i~~~~~~g~  251 (372)
                      + .+-....+.-+++...
T Consensus       411 L-vnL~~qei~LWDl~e~  427 (519)
T KOG0293|consen  411 L-VNLQDQEIHLWDLEEN  427 (519)
T ss_pred             E-EEcccCeeEEeecchh
Confidence            4 4455677888887643

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=95.94  E-value=0.89  Score=42.06  Aligned_cols=139  Identities=9%  Similarity=0.023  Sum_probs=71.5

Q ss_pred             CcEEEEe-----cCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCC-EEEEeCC-----Cc-----EEEEcCCCcEEE
Q 017371           90 GVIYTAT-----RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA-----NG-----LHKVSEDGVENF  151 (372)
Q Consensus        90 G~l~v~~-----~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~-l~v~~~~-----~g-----v~~~~~~g~~~l  151 (372)
                      .++|+.+     ..++++.+|  ++++.--... +.-- .+.+++||+ +|+++..     +|     |-.+|...+...
T Consensus         3 ~rvyV~D~~~~~~~~rv~viD~d~~k~lGmi~~-g~~~-~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~   80 (342)
T PF06433_consen    3 HRVYVQDPVFFHMTSRVYVIDADSGKLLGMIDT-GFLG-NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPT   80 (342)
T ss_dssp             TEEEEEE-GGGGSSEEEEEEETTTTEEEEEEEE-ESSE-EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEE
T ss_pred             cEEEEECCccccccceEEEEECCCCcEEEEeec-ccCC-ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCccc
Confidence            3677776     236788888  4443221121 1112 566788885 7777643     12     334553332222


Q ss_pred             ee-ecCCc----ccccccceEEccCC-cEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEE
Q 017371          152 LS-YVNGS----KLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVA  225 (372)
Q Consensus       152 ~~-~~~~~----~~~~~~~l~~d~dG-~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~  225 (372)
                      .+ ..+..    .....+.+++..|| .+||.+.+                +...|-.+|.+.+++..   ....|-...
T Consensus        81 ~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~T----------------Pa~SVtVVDl~~~kvv~---ei~~PGC~~  141 (342)
T PF06433_consen   81 GEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFT----------------PATSVTVVDLAAKKVVG---EIDTPGCWL  141 (342)
T ss_dssp             EEEEETTS-B--BS--GGGEEE-TTSSEEEEEEES----------------SSEEEEEEETTTTEEEE---EEEGTSEEE
T ss_pred             ceEecCCcchheecccccceEEccCCcEEEEEccC----------------CCCeEEEEECCCCceee---eecCCCEEE
Confidence            21 12221    12456778888888 57776654                77889999998777643   223333332


Q ss_pred             EecCCCEEEEEeCCCCeEEEEEcc
Q 017371          226 LSRDEDYVVVCESWKFRCRKYWLK  249 (372)
Q Consensus       226 ~~~dg~~l~v~~~~~~~i~~~~~~  249 (372)
                      +.|-++.-+.+-++++.+..+.++
T Consensus       142 iyP~~~~~F~~lC~DGsl~~v~Ld  165 (342)
T PF06433_consen  142 IYPSGNRGFSMLCGDGSLLTVTLD  165 (342)
T ss_dssp             EEEEETTEEEEEETTSCEEEEEET
T ss_pred             EEecCCCceEEEecCCceEEEEEC
Confidence            333221123344455667777776

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=95.94  E-value=1.4  Score=41.61  Aligned_cols=135  Identities=18%  Similarity=0.219  Sum_probs=73.5

Q ss_pred             eEEEEeCCCCeEEEEe-------CCccCcceEEEec---CCCEEEEEeCCCCeEEEEEccCCCCcc-----eeeeccCCC
Q 017371          200 QLLKYDPSSNITTLVA-------DGFYFANGVALSR---DEDYVVVCESWKFRCRKYWLKGERKGK-----LETFAENLP  264 (372)
Q Consensus       200 ~v~~~d~~t~~~~~~~-------~~~~~~~gi~~~~---dg~~l~v~~~~~~~i~~~~~~g~~~~~-----~~~~~~~~~  264 (372)
                      ++|++|++++.++.+.       ..+..+.|+|+..   +|....+.....+++..|.+.....+.     ...|  .++
T Consensus       130 ~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f--~~~  207 (381)
T PF02333_consen  130 RLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREF--KVG  207 (381)
T ss_dssp             EEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEE--E-S
T ss_pred             EEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEe--cCC
Confidence            5889998878776543       3345577999753   344222333344678888775222221     2233  244


Q ss_pred             CCCceeEEcC-CCCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEECCC--C-cEEEEEECCCC
Q 017371          265 GAPDNINLAP-DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED--G-TIIRNLVDPTG  340 (372)
Q Consensus       265 g~p~~i~~d~-~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~--g-~~~~~~~~~~g  340 (372)
                      +.+.++++|. .|.||++.-.                                   .+|.+|+.+  + ..-..+....|
T Consensus       208 sQ~EGCVVDDe~g~LYvgEE~-----------------------------------~GIW~y~Aep~~~~~~~~v~~~~g  252 (381)
T PF02333_consen  208 SQPEGCVVDDETGRLYVGEED-----------------------------------VGIWRYDAEPEGGNDRTLVASADG  252 (381)
T ss_dssp             S-EEEEEEETTTTEEEEEETT-----------------------------------TEEEEEESSCCC-S--EEEEEBSS
T ss_pred             CcceEEEEecccCCEEEecCc-----------------------------------cEEEEEecCCCCCCcceeeecccc
Confidence            5688999875 5789999876                                   367888643  2 21112211122


Q ss_pred             -CeeccceeeEE---E--CCEEEEEeCCCCeEEEEeC
Q 017371          341 -QLMSFVTSGLQ---V--DNHLYVISLTSNFIGKVQL  371 (372)
Q Consensus       341 -~~~~~~t~~~~---~--~g~L~igs~~~~~i~~~~~  371 (372)
                       .....+..+..   .  .|+|.+.+-..+...+++.
T Consensus       253 ~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r  289 (381)
T PF02333_consen  253 DGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDR  289 (381)
T ss_dssp             SSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEES
T ss_pred             cccccCccceEEEecCCCCeEEEEEcCCCCeEEEEec
Confidence             22334444444   1  2678888877778887763

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=95.85  E-value=1.1  Score=43.39  Aligned_cols=107  Identities=20%  Similarity=0.113  Sum_probs=60.8

Q ss_pred             CeEEcCCCC-EEEEeCCC---cEEEEcCCC--cEEEeeecCCcccccccceEEccCCc-EEEE-eCCCCCCCcccccccc
Q 017371          122 GLTSTKEGH-LIICDNAN---GLHKVSEDG--VENFLSYVNGSKLRFANDVVEASDGS-LYFT-VSSSKYLPHEYCLDIL  193 (372)
Q Consensus       122 gl~~d~dG~-l~v~~~~~---gv~~~~~~g--~~~l~~~~~~~~~~~~~~l~~d~dG~-i~vt-d~~~~~~~~~~~~~~~  193 (372)
                      ..++.|||+ |.++....   .++.+|-++  ...+.. ..+..  .  .=.+.|||+ |+|+ |.+             
T Consensus       242 ~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~-~~gi~--~--~Ps~spdG~~ivf~Sdr~-------------  303 (425)
T COG0823         242 APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTN-GFGIN--T--SPSWSPDGSKIVFTSDRG-------------  303 (425)
T ss_pred             CccCCCCCCEEEEEECCCCCccEEEEcCCCCcceeccc-CCccc--c--CccCCCCCCEEEEEeCCC-------------
Confidence            556778885 33332222   377777333  333322 12211  0  124557884 5554 322             


Q ss_pred             cccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCCCC--eEEEEEcc
Q 017371          194 EGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKF--RCRKYWLK  249 (372)
Q Consensus       194 ~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~--~i~~~~~~  249 (372)
                         +.-.||++|.++++.+.+........--.++|||+++.+....++  .|..+++.
T Consensus       304 ---G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~  358 (425)
T COG0823         304 ---GRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLA  358 (425)
T ss_pred             ---CCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccC
Confidence               344799999998887776655555545678999998888774333  35555553

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=95.82  E-value=1.6  Score=43.81  Aligned_cols=176  Identities=14%  Similarity=0.165  Sum_probs=103.9

Q ss_pred             EEEcCCCcEEEEecCCeEEEEe--CCceEEE--EecCCCcccCeEEcCCCCEEEEeCCCcEEEE-c-CCC--cEEEeeec
Q 017371           84 ASMDKNGVIYTATRDGWIKRLQ--DGTWVNW--KFIDSQTLVGLTSTKEGHLIICDNANGLHKV-S-EDG--VENFLSYV  155 (372)
Q Consensus        84 i~~d~~G~l~v~~~~g~i~~~~--~g~~~~~--~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~-~-~~g--~~~l~~~~  155 (372)
                      ++++++|...++.-+..|..++  +++....  ......-+..+++++|+...++....++.++ . +.|  ++.+....
T Consensus        25 ~~~s~nG~~L~t~~~d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~H  104 (775)
T KOG0319|consen   25 VAWSSNGQHLYTACGDRVIIIDVATGSIALPSGSNEDEDEITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIH  104 (775)
T ss_pred             eeECCCCCEEEEecCceEEEEEccCCceecccCCccchhhhheeeecCCccEEEEeeccceEEEEEcccchHhHhHhhcc
Confidence            8999999666555556788888  6655311  1111122238889999876666555555544 4 566  44333221


Q ss_pred             CCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcc-eEEEecCCC-EE
Q 017371          156 NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFAN-GVALSRDED-YV  233 (372)
Q Consensus       156 ~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~-gi~~~~dg~-~l  233 (372)
                      .+    ..-.+++++.|.+..+                 +...+++..+|-+.+.......++..+. .+.|.|+-+ .+
T Consensus       105 e~----Pvi~ma~~~~g~LlAt-----------------ggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~l  163 (775)
T KOG0319|consen  105 EA----PVITMAFDPTGTLLAT-----------------GGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWL  163 (775)
T ss_pred             CC----CeEEEEEcCCCceEEe-----------------ccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhh
Confidence            22    2346889999976554                 3367788888887777777777766554 456777754 35


Q ss_pred             EEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEE
Q 017371          234 VVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAI  282 (372)
Q Consensus       234 ~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~  282 (372)
                      +++...+..+..|++..... -...... ...-..++.+.+|++--++.
T Consensus       164 L~sg~~D~~v~vwnl~~~~t-cl~~~~~-H~S~vtsL~~~~d~~~~ls~  210 (775)
T KOG0319|consen  164 LASGATDGTVRVWNLNDKRT-CLHTMIL-HKSAVTSLAFSEDSLELLSV  210 (775)
T ss_pred             eeecCCCceEEEEEcccCch-HHHHHHh-hhhheeeeeeccCCceEEEe
Confidence            56666677888888764211 1111111 11224567777777544443

>PHA02713 hypothetical protein; Provisional

Probab=95.79  E-value=1.8  Score=43.52  Aligned_cols=118  Identities=13%  Similarity=0.133  Sum_probs=57.8

Q ss_pred             eEEEEe--CCceEEEEecCCCc-ccCeEEcCCCCEEEEeCC-------CcEEEEc-CCC-cEEEeeecCCcccccccceE
Q 017371          100 WIKRLQ--DGTWVNWKFIDSQT-LVGLTSTKEGHLIICDNA-------NGLHKVS-EDG-VENFLSYVNGSKLRFANDVV  167 (372)
Q Consensus       100 ~i~~~~--~g~~~~~~~~~~~p-~~gl~~d~dG~l~v~~~~-------~gv~~~~-~~g-~~~l~~~~~~~~~~~~~~l~  167 (372)
                      .+.+++  .++|..+....... ..+.+. -+|.|||....       ..+.++| .++ ...++.. +..+  . ..-+
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m-~~~R--~-~~~~  347 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHIINYASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPM-IKNR--C-RFSL  347 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccccceEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCC-cchh--h-ceeE
Confidence            466777  55665543321111 113333 36789988542       1266777 444 4433221 1111  1 1222


Q ss_pred             EccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcc---eEEEecCCCEEEEEe
Q 017371          168 EASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFAN---GVALSRDEDYVVVCE  237 (372)
Q Consensus       168 ~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~---gi~~~~dg~~l~v~~  237 (372)
                      ..-+|+||+.-..            ........+.+|||.+++++.+.. +..+.   +++. -+| .+|+..
T Consensus       348 ~~~~g~IYviGG~------------~~~~~~~sve~Ydp~~~~W~~~~~-mp~~r~~~~~~~-~~g-~IYviG  405 (557)
T PHA02713        348 AVIDDTIYAIGGQ------------NGTNVERTIECYTMGDDKWKMLPD-MPIALSSYGMCV-LDQ-YIYIIG  405 (557)
T ss_pred             EEECCEEEEECCc------------CCCCCCceEEEEECCCCeEEECCC-CCcccccccEEE-ECC-EEEEEe
Confidence            3357899985210            001123468999999888876543 22221   2222 234 588865

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=95.68  E-value=0.54  Score=45.05  Aligned_cols=110  Identities=17%  Similarity=0.264  Sum_probs=67.6

Q ss_pred             ccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCcc----CcceEEEecCCCEEEEE
Q 017371          161 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFY----FANGVALSRDEDYVVVC  236 (372)
Q Consensus       161 ~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~----~~~gi~~~~dg~~l~v~  236 (372)
                      +++.....-+||+-.+.                 +.....|-.+|..+-..++-+ .+.    .-..++++||.+ +.++
T Consensus       466 nyiRSckL~pdgrtLiv-----------------GGeastlsiWDLAapTprika-eltssapaCyALa~spDak-vcFs  526 (705)
T KOG0639|consen  466 NYIRSCKLLPDGRTLIV-----------------GGEASTLSIWDLAAPTPRIKA-ELTSSAPACYALAISPDAK-VCFS  526 (705)
T ss_pred             cceeeeEecCCCceEEe-----------------ccccceeeeeeccCCCcchhh-hcCCcchhhhhhhcCCccc-eeee
Confidence            45556666788854442                 112345666776543333221 222    224688999998 5555


Q ss_pred             eCCCCeEEEEEccCCCCcceeeeccCCCCCCce---eEEcCCC-CEEEEEecCchhHHHHhhc
Q 017371          237 ESWKFRCRKYWLKGERKGKLETFAENLPGAPDN---INLAPDG-TFWIAIIKLDARRMKILNS  295 (372)
Q Consensus       237 ~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~---i~~d~~G-~lwva~~~~~~~~~~~~~~  295 (372)
                      -...+.|..+++...      .....+.|.+||   |.+..|| +||.+...+....||+-..
T Consensus       527 ccsdGnI~vwDLhnq------~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlreg  583 (705)
T KOG0639|consen  527 CCSDGNIAVWDLHNQ------TLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREG  583 (705)
T ss_pred             eccCCcEEEEEcccc------eeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhh
Confidence            556667888888653      223345666776   7778899 7999987776667776443

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.65  E-value=3.1  Score=42.99  Aligned_cols=147  Identities=14%  Similarity=0.115  Sum_probs=87.1

Q ss_pred             CCCccEEEcCCCcEEEEe--cCCeEEEEe--CC-ceEEEEecCCCcccCeEEcCCCCEEEEeCC-CcEEEEc-CCC---c
Q 017371           79 NHPEDASMDKNGVIYTAT--RDGWIKRLQ--DG-TWVNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG---V  148 (372)
Q Consensus        79 ~~p~~i~~d~~G~l~v~~--~~g~i~~~~--~g-~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~-~gv~~~~-~~g---~  148 (372)
                      .+.-++++-|. +.|+-+  .+|.|..||  -| -+..|..-.|-.. |++|.+++-|+|+..+ ..+.+++ ++.   .
T Consensus        10 sRvKglsFHP~-rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVR-gv~FH~~qplFVSGGDDykIkVWnYk~rrclf   87 (1202)
T KOG0292|consen   10 SRVKGLSFHPK-RPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVR-GVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLF   87 (1202)
T ss_pred             ccccceecCCC-CCEEEEeecCceeeeehhhhhhHHhhhhccCCccc-eeeecCCCCeEEecCCccEEEEEecccceehh
Confidence            45567777765 455443  788888887  23 2444544455566 9999999999998654 3455555 333   2


Q ss_pred             EEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCc-ceEEEe
Q 017371          149 ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA-NGVALS  227 (372)
Q Consensus       149 ~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~-~gi~~~  227 (372)
                      +.+.+      +-++..+.|.+. .=||-..|                .+..|..+|-.+.+...++++...- ..-.|+
T Consensus        88 tL~GH------lDYVRt~~FHhe-yPWIlSAS----------------DDQTIrIWNwqsr~~iavltGHnHYVMcAqFh  144 (1202)
T KOG0292|consen   88 TLLGH------LDYVRTVFFHHE-YPWILSAS----------------DDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFH  144 (1202)
T ss_pred             hhccc------cceeEEeeccCC-CceEEEcc----------------CCCeEEEEeccCCceEEEEecCceEEEeeccC
Confidence            22211      124445555443 23443222                3344555555555554555554332 234488


Q ss_pred             cCCCEEEEEeCCCCeEEEEEccCC
Q 017371          228 RDEDYVVVCESWKFRCRKYWLKGE  251 (372)
Q Consensus       228 ~dg~~l~v~~~~~~~i~~~~~~g~  251 (372)
                      |.++ ++|+.+-+..|..+|+.|-
T Consensus       145 ptED-lIVSaSLDQTVRVWDisGL  167 (1202)
T KOG0292|consen  145 PTED-LIVSASLDQTVRVWDISGL  167 (1202)
T ss_pred             Cccc-eEEEecccceEEEEeecch
Confidence            8776 8999998999999998874

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=95.63  E-value=2.7  Score=41.85  Aligned_cols=180  Identities=12%  Similarity=0.017  Sum_probs=96.8

Q ss_pred             CCCccEEEcCCCcEEEEecCCeEEEEe--CCceEEE-EecCCCcccCeEEcCCCC-EEEEeCCCcEEEE-c-CCCcEEEe
Q 017371           79 NHPEDASMDKNGVIYTATRDGWIKRLQ--DGTWVNW-KFIDSQTLVGLTSTKEGH-LIICDNANGLHKV-S-EDGVENFL  152 (372)
Q Consensus        79 ~~p~~i~~d~~G~l~v~~~~g~i~~~~--~g~~~~~-~~~~~~p~~gl~~d~dG~-l~v~~~~~gv~~~-~-~~g~~~l~  152 (372)
                      ..-|+|+..++|+|+-...+|.|..||  +++...- ...++-.+ .++..+.+. +-|+. ..|+..+ + ..+.-.+.
T Consensus        70 rsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IW-siai~p~~~~l~Igc-ddGvl~~~s~~p~~I~~~  147 (691)
T KOG2048|consen   70 RSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIW-SIAINPENTILAIGC-DDGVLYDFSIGPDKITYK  147 (691)
T ss_pred             CceeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCCccee-EEEeCCccceEEeec-CCceEEEEecCCceEEEE
Confidence            457889999889999888999999999  6665443 33445556 888888775 44542 3453332 2 22311111


Q ss_pred             eecCCcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEE----eCCccC-cc----
Q 017371          153 SYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV----ADGFYF-AN----  222 (372)
Q Consensus       153 ~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~----~~~~~~-~~----  222 (372)
                      ..+.-. -..+-.+.++++|. |..                  +..+|.|..+|..+++.-.+    .+++.. -+    
T Consensus       148 r~l~rq-~sRvLslsw~~~~~~i~~------------------Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVW  208 (691)
T KOG2048|consen  148 RSLMRQ-KSRVLSLSWNPTGTKIAG------------------GSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVW  208 (691)
T ss_pred             eecccc-cceEEEEEecCCccEEEe------------------cccCceEEEEEcCCCceEEEeeecccccccCCceEEE
Confidence            111111 12345788888886 444                  33456677778765543331    122322 22    


Q ss_pred             eEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCC-EEEEEec
Q 017371          223 GVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIK  284 (372)
Q Consensus       223 gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwva~~~  284 (372)
                      ++.+-.|+  .+++....+.|..++.....+.+  .+. .+.+-.-.++++.+++ ++++...
T Consensus       209 Sv~~Lrd~--tI~sgDS~G~V~FWd~~~gTLiq--S~~-~h~adVl~Lav~~~~d~vfsaGvd  266 (691)
T KOG2048|consen  209 SVLFLRDS--TIASGDSAGTVTFWDSIFGTLIQ--SHS-CHDADVLALAVADNEDRVFSAGVD  266 (691)
T ss_pred             EEEEeecC--cEEEecCCceEEEEcccCcchhh--hhh-hhhcceeEEEEcCCCCeEEEccCC
Confidence            34444565  33443344556655544322221  111 1222345677887764 5555544

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=95.52  E-value=0.89  Score=38.88  Aligned_cols=149  Identities=17%  Similarity=0.169  Sum_probs=87.4

Q ss_pred             ccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEe--C-CccCcceEEEecCCCEEEEEe
Q 017371          161 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA--D-GFYFANGVALSRDEDYVVVCE  237 (372)
Q Consensus       161 ~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~--~-~~~~~~gi~~~~dg~~l~v~~  237 (372)
                      .+..++..+ +|+|+.+..-  |             +...|.++|..+|+...-.  . .-.|..|+.-  -|+++|...
T Consensus        46 sfTQGL~~~-~g~i~esTG~--y-------------g~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~--~gd~~y~LT  107 (262)
T COG3823          46 SFTQGLEYL-DGHILESTGL--Y-------------GFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITK--LGDYFYQLT  107 (262)
T ss_pred             hhhcceeee-CCEEEEeccc--c-------------ccceeEEEeccCceEEEEeecCCccccccceee--ccceEEEEE
Confidence            355677664 4588886531  1             3457888998877754421  1 2233445543  366788888


Q ss_pred             CCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCC-CEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccC
Q 017371          238 SWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDG-TFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITL  316 (372)
Q Consensus       238 ~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G-~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~  316 (372)
                      ....--++|+.++-+  ....+.  -+|  +|-.+..|| ++|.++..                                
T Consensus       108 w~egvaf~~d~~t~~--~lg~~~--y~G--eGWgLt~d~~~LimsdGs--------------------------------  149 (262)
T COG3823         108 WKEGVAFKYDADTLE--ELGRFS--YEG--EGWGLTSDDKNLIMSDGS--------------------------------  149 (262)
T ss_pred             eccceeEEEChHHhh--hhcccc--cCC--cceeeecCCcceEeeCCc--------------------------------
Confidence            777767778776421  111221  122  333343444 69988865                                


Q ss_pred             CCceEEEEECCC-----CcEEEEEECCCCCeeccceeeEEECCEEEEEeCCCCeEEEEeC
Q 017371          317 GGGAHLIHVAED-----GTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL  371 (372)
Q Consensus       317 ~~~~~v~~~~~~-----g~~~~~~~~~~g~~~~~~t~~~~~~g~L~igs~~~~~i~~~~~  371 (372)
                         ..+...||+     +++..   ..+|..........-.+|.||-.-+..+.|.|++-
T Consensus       150 ---atL~frdP~tfa~~~~v~V---T~~g~pv~~LNELE~VdG~lyANVw~t~~I~rI~p  203 (262)
T COG3823         150 ---ATLQFRDPKTFAELDTVQV---TDDGVPVSKLNELEWVDGELYANVWQTTRIARIDP  203 (262)
T ss_pred             ---eEEEecCHHHhhhcceEEE---EECCeecccccceeeeccEEEEeeeeecceEEEcC
Confidence               345555654     22222   22355455555666678999998888999998874

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.47  E-value=1.7  Score=38.49  Aligned_cols=144  Identities=13%  Similarity=0.097  Sum_probs=73.2

Q ss_pred             CccEEEcCCCcEEEEecCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCC-EEEEeCCCcEEEEc-CCC-c-EEEeee
Q 017371           81 PEDASMDKNGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNANGLHKVS-EDG-V-ENFLSY  154 (372)
Q Consensus        81 p~~i~~d~~G~l~v~~~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~-l~v~~~~~gv~~~~-~~g-~-~~l~~~  154 (372)
                      |--+.-|..-.+|+|+..+++..+|  .|+...-...+.+.- +-+.- -|+ +.++-...+++.++ .+| . ..+.. 
T Consensus        15 pLVV~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE-~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~-   91 (354)
T KOG4649|consen   15 PLVVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIE-CSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVI-   91 (354)
T ss_pred             cEEEecCCceEEEEecCCceEEEecCCCCcEEeehhhCceee-eeeEE-ECCEEEEEEccCcEEEEEecchhheeeeee-
Confidence            3334444455789999999999998  665432222222222 22222 233 33344445677777 666 2 21111 


Q ss_pred             cCCcccccccceEEccCC-cEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEE-eCCccCcceEEEecCCCE
Q 017371          155 VNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-ADGFYFANGVALSRDEDY  232 (372)
Q Consensus       155 ~~~~~~~~~~~l~~d~dG-~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~-~~~~~~~~gi~~~~dg~~  232 (372)
                      .+..+   . .-..|.++ -||.+.                  .++..|.+|+.+..-..- ..+...-.+-++++-...
T Consensus        92 ~~~vk---~-~a~~d~~~glIycgs------------------hd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~s  149 (354)
T KOG4649|consen   92 LETVK---V-RAQCDFDGGLIYCGS------------------HDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGS  149 (354)
T ss_pred             hhhhc---c-ceEEcCCCceEEEec------------------CCCcEEEecccccceEEecccCCceeccceecCCCce
Confidence            11111   0 12355554 577642                  456788888765432111 111111234456663345


Q ss_pred             EEEEeCCCCeEEEEEccC
Q 017371          233 VVVCESWKFRCRKYWLKG  250 (372)
Q Consensus       233 l~v~~~~~~~i~~~~~~g  250 (372)
                      ||++.+. ++|.++..+.
T Consensus       150 ly~a~t~-G~vlavt~~~  166 (354)
T KOG4649|consen  150 LYAAITA-GAVLAVTKNP  166 (354)
T ss_pred             EEEEecc-ceEEEEccCC
Confidence            9999875 4788887654

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=95.42  E-value=3.4  Score=43.23  Aligned_cols=138  Identities=14%  Similarity=0.140  Sum_probs=80.5

Q ss_pred             CCccEEEcCCC-cEEEEecCCeEEEEe-C-----------C---ceEEEE------ecCCCcccCeEEcCCCCEEEEeCC
Q 017371           80 HPEDASMDKNG-VIYTATRDGWIKRLQ-D-----------G---TWVNWK------FIDSQTLVGLTSTKEGHLIICDNA  137 (372)
Q Consensus        80 ~p~~i~~d~~G-~l~v~~~~g~i~~~~-~-----------g---~~~~~~------~~~~~p~~gl~~d~dG~l~v~~~~  137 (372)
                      --.++-+.+|| +|+.|+.|.-|..+. .           |   .++.|.      .-.+... .+..+|++.+++.-..
T Consensus        71 sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~-Dv~Wsp~~~~lvS~s~  149 (942)
T KOG0973|consen   71 SVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVL-DVNWSPDDSLLVSVSL  149 (942)
T ss_pred             ceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccc-eeccCCCccEEEEecc
Confidence            34567788888 667776665445454 2           1   122332      1224456 8899999988877543


Q ss_pred             -CcEEEEc-CCC--cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEE
Q 017371          138 -NGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL  213 (372)
Q Consensus       138 -~gv~~~~-~~g--~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~  213 (372)
                       +.|..++ ...  .+++.    +- ...+.++.+||-|+.+.+.+                 .+..|..++..+-..+.
T Consensus       150 DnsViiwn~~tF~~~~vl~----~H-~s~VKGvs~DP~Gky~ASqs-----------------dDrtikvwrt~dw~i~k  207 (942)
T KOG0973|consen  150 DNSVIIWNAKTFELLKVLR----GH-QSLVKGVSWDPIGKYFASQS-----------------DDRTLKVWRTSDWGIEK  207 (942)
T ss_pred             cceEEEEccccceeeeeee----cc-cccccceEECCccCeeeeec-----------------CCceEEEEEcccceeeE
Confidence             5688887 333  33332    11 24677999999999766644                 23445445433323333


Q ss_pred             EeCC-cc------CcceEEEecCCCEEEEEeCCC
Q 017371          214 VADG-FY------FANGVALSRDEDYVVVCESWK  240 (372)
Q Consensus       214 ~~~~-~~------~~~gi~~~~dg~~l~v~~~~~  240 (372)
                      ..+. +.      +-..+.|+|||.+|-..+..+
T Consensus       208 ~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n  241 (942)
T KOG0973|consen  208 SITKPFEESPLTTFFLRLSWSPDGHHLASPNAVN  241 (942)
T ss_pred             eeccchhhCCCcceeeecccCCCcCeecchhhcc
Confidence            3322 11      123577999999888766544

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=95.38  E-value=1.3  Score=42.02  Aligned_cols=207  Identities=14%  Similarity=0.083  Sum_probs=104.4

Q ss_pred             CcccCeEEcCCCCEEEEeCC-CcEEEEc-CCC--cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccc
Q 017371          118 QTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDIL  193 (372)
Q Consensus       118 ~p~~gl~~d~dG~l~v~~~~-~gv~~~~-~~g--~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~  193 (372)
                      .|...|+.+++|.+.++..- ..++.+. .+|  +.++..-.     ..+.-|.+..||..+||-+              
T Consensus        82 g~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHY-----Q~ITcL~fs~dgs~iiTgs--------------  142 (476)
T KOG0646|consen   82 GPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHY-----QSITCLKFSDDGSHIITGS--------------  142 (476)
T ss_pred             cceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhc-----cceeEEEEeCCCcEEEecC--------------
Confidence            33438888999988777633 4488888 777  33331111     1344567778888888633              


Q ss_pred             cccCCCeEEEEeCC-------CCeEEEE--eCCcc-CcceEEEecC--CCEEEEEeCCCCeEEEEEccCCCCcceeeecc
Q 017371          194 EGKPHGQLLKYDPS-------SNITTLV--ADGFY-FANGVALSRD--EDYVVVCESWKFRCRKYWLKGERKGKLETFAE  261 (372)
Q Consensus       194 ~~~~~g~v~~~d~~-------t~~~~~~--~~~~~-~~~gi~~~~d--g~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~  261 (372)
                         .+|.|+.++.-       +..+..+  ..... .-..+.++..  ..++| +.+.+..+..|++....+-..  +  
T Consensus       143 ---kDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~-TaS~D~t~k~wdlS~g~LLlt--i--  214 (476)
T KOG0646|consen  143 ---KDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLY-TASEDRTIKLWDLSLGVLLLT--I--  214 (476)
T ss_pred             ---CCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEE-EecCCceEEEEEeccceeeEE--E--
Confidence               45566555321       1111110  00000 0011222222  12243 334455666677765422111  1  


Q ss_pred             CCCCCCceeEEcCCC-CEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEECCCCcEEEEEECCCC
Q 017371          262 NLPGAPDNINLAPDG-TFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTG  340 (372)
Q Consensus       262 ~~~g~p~~i~~d~~G-~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g  340 (372)
                      ..|.-+..+++|+.+ .+|+++.........+           ..+|..       ..+-....++.+++.+..+....+
T Consensus       215 ~fp~si~av~lDpae~~~yiGt~~G~I~~~~~-----------~~~~~~-------~~~v~~k~~~~~~t~~~~~~Gh~~  276 (476)
T KOG0646|consen  215 TFPSSIKAVALDPAERVVYIGTEEGKIFQNLL-----------FKLSGQ-------SAGVNQKGRHEENTQINVLVGHEN  276 (476)
T ss_pred             ecCCcceeEEEcccccEEEecCCcceEEeeeh-----------hcCCcc-------cccccccccccccceeeeeccccC
Confidence            133346778888877 5777765421111111           011100       000012334456666666654333


Q ss_pred             CeeccceeeEEE-CCEEEEEeCCCCeEEEEeC
Q 017371          341 QLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL  371 (372)
Q Consensus       341 ~~~~~~t~~~~~-~g~L~igs~~~~~i~~~~~  371 (372)
                      .  +.+|+.... ||.|.+..-....+.++++
T Consensus       277 ~--~~ITcLais~DgtlLlSGd~dg~VcvWdi  306 (476)
T KOG0646|consen  277 E--SAITCLAISTDGTLLLSGDEDGKVCVWDI  306 (476)
T ss_pred             C--cceeEEEEecCccEEEeeCCCCCEEEEec
Confidence            1  368888885 8888888878888888774

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=95.32  E-value=0.37  Score=43.58  Aligned_cols=107  Identities=16%  Similarity=0.281  Sum_probs=60.8

Q ss_pred             CeEEcCCCCEEEEeCCCcEEEEc--CCC--cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccC
Q 017371          122 GLTSTKEGHLIICDNANGLHKVS--EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKP  197 (372)
Q Consensus       122 gl~~d~dG~l~v~~~~~gv~~~~--~~g--~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~  197 (372)
                      .+.|.+|+.-.......-..++.  ++|  ...+    .|- ..++|...+.+||+-.++-+                 .
T Consensus       311 ~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEf----rGH-sSyvn~a~ft~dG~~iisaS-----------------s  368 (508)
T KOG0275|consen  311 CLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEF----RGH-SSYVNEATFTDDGHHIISAS-----------------S  368 (508)
T ss_pred             EEEEccCcchhhcccccceEEEeccccchhHHHh----cCc-cccccceEEcCCCCeEEEec-----------------C
Confidence            67788887544433333456665  455  2222    221 25788899999998777654                 4


Q ss_pred             CCeEEEEeCCCCeEEEEeCC---ccCcceEEEecC-CCEEEEEeCCCCeEEEEEccCC
Q 017371          198 HGQLLKYDPSSNITTLVADG---FYFANGVALSRD-EDYVVVCESWKFRCRKYWLKGE  251 (372)
Q Consensus       198 ~g~v~~~d~~t~~~~~~~~~---~~~~~gi~~~~d-g~~l~v~~~~~~~i~~~~~~g~  251 (372)
                      +|.|-.++.++.+.......   -..-|.+-+-|. -.+++|++. .+.|+..++.|.
T Consensus       369 DgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNr-sntv~imn~qGQ  425 (508)
T KOG0275|consen  369 DGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNR-SNTVYIMNMQGQ  425 (508)
T ss_pred             CccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcC-CCeEEEEeccce
Confidence            66777777665432211111   111234444443 446777775 457888887764

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=95.31  E-value=2.3  Score=39.05  Aligned_cols=171  Identities=16%  Similarity=0.220  Sum_probs=80.5

Q ss_pred             EEEcCCCcEEEEecCCeEEEEe-CC-ceEEEEe---cCCCcccCeEEcCCCCEEEEeCCCcEEEEcCCC--cEEEeeecC
Q 017371           84 ASMDKNGVIYTATRDGWIKRLQ-DG-TWVNWKF---IDSQTLVGLTSTKEGHLIICDNANGLHKVSEDG--VENFLSYVN  156 (372)
Q Consensus        84 i~~d~~G~l~v~~~~g~i~~~~-~g-~~~~~~~---~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~~~g--~~~l~~~~~  156 (372)
                      |.++. ...|+....|.|++-. .| .++.+..   ..+.+. ++....++..+++.....+++-...|  .+.+.....
T Consensus        67 I~f~~-~~g~ivG~~g~ll~T~DgG~tW~~v~l~~~lpgs~~-~i~~l~~~~~~l~~~~G~iy~T~DgG~tW~~~~~~~~  144 (302)
T PF14870_consen   67 ISFDG-NEGWIVGEPGLLLHTTDGGKTWERVPLSSKLPGSPF-GITALGDGSAELAGDRGAIYRTTDGGKTWQAVVSETS  144 (302)
T ss_dssp             EEEET-TEEEEEEETTEEEEESSTTSS-EE----TT-SS-EE-EEEEEETTEEEEEETT--EEEESSTTSSEEEEE-S--
T ss_pred             EEecC-CceEEEcCCceEEEecCCCCCcEEeecCCCCCCCee-EEEEcCCCcEEEEcCCCcEEEeCCCCCCeeEcccCCc
Confidence            44443 3566666667677766 33 4666532   235566 66665667777765544466665545  554443322


Q ss_pred             CcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEE-EeCCCCeEEEEeCC-ccCcceEEEecCCCEEE
Q 017371          157 GSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLK-YDPSSNITTLVADG-FYFANGVALSRDEDYVV  234 (372)
Q Consensus       157 ~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~-~d~~t~~~~~~~~~-~~~~~gi~~~~dg~~l~  234 (372)
                          ...+++...+||++....                  ..|.+|. .|+.....+..... ...-..+.+++|++ ||
T Consensus       145 ----gs~~~~~r~~dG~~vavs------------------~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~-lw  201 (302)
T PF14870_consen  145 ----GSINDITRSSDGRYVAVS------------------SRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGN-LW  201 (302)
T ss_dssp             ------EEEEEE-TTS-EEEEE------------------TTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS--EE
T ss_pred             ----ceeEeEEECCCCcEEEEE------------------CcccEEEEecCCCccceEEccCccceehhceecCCCC-EE
Confidence                345667777888754322                  3455553 45532234433322 23345678899976 88


Q ss_pred             EEeCCCCeEEEEEccCCCCcceeeecc----C-CCCC-CceeEEcCCCCEEEEEec
Q 017371          235 VCESWKFRCRKYWLKGERKGKLETFAE----N-LPGA-PDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       235 v~~~~~~~i~~~~~~g~~~~~~~~~~~----~-~~g~-p~~i~~d~~G~lwva~~~  284 (372)
                      +... +..|+.=+..    ...+.+..    . ..++ .-.++..+++.+|++...
T Consensus       202 ~~~~-Gg~~~~s~~~----~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~  252 (302)
T PF14870_consen  202 MLAR-GGQIQFSDDP----DDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS  252 (302)
T ss_dssp             EEET-TTEEEEEE-T----TEEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST
T ss_pred             EEeC-CcEEEEccCC----CCccccccccCCcccCceeeEEEEecCCCCEEEEeCC
Confidence            7764 4445544411    11222221    1 1111 234678899999998876

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=95.30  E-value=0.55  Score=47.37  Aligned_cols=150  Identities=13%  Similarity=0.163  Sum_probs=92.3

Q ss_pred             CccEEEcC-CC-cEEEEecCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCCEEEEeCCCcEEEEc-CCC--cEE-E-
Q 017371           81 PEDASMDK-NG-VIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG--VEN-F-  151 (372)
Q Consensus        81 p~~i~~d~-~G-~l~v~~~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~-~~g--~~~-l-  151 (372)
                      ..||++.| |. ++.-|+-||+|..|.  +.++..|...-.... .+++.|||...|.....|..++- ..|  +.. . 
T Consensus       412 VTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lIT-Avcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~  490 (712)
T KOG0283|consen  412 VTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLIT-AVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFH  490 (712)
T ss_pred             eEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhhe-eEEeccCCceEEEEEeccEEEEEEccCCeEEEeee
Confidence            55688887 33 333455799888888  777888876655556 99999999877776677876665 444  111 1 


Q ss_pred             eeecCC--cccccccceEEccCC--cEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcc---eE
Q 017371          152 LSYVNG--SKLRFANDVVEASDG--SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFAN---GV  224 (372)
Q Consensus       152 ~~~~~~--~~~~~~~~l~~d~dG--~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~---gi  224 (372)
                      .....+  ...+.+.++-+.+..  ++.||.                  .+.+|..||..+.++.....++...+   .-
T Consensus       491 I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTS------------------nDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~A  552 (712)
T KOG0283|consen  491 IRLHNKKKKQGKRITGLQFFPGDPDEVLVTS------------------NDSRIRIYDGRDKDLVHKFKGFRNTSSQISA  552 (712)
T ss_pred             EeeccCccccCceeeeeEecCCCCCeEEEec------------------CCCceEEEeccchhhhhhhcccccCCcceee
Confidence            111011  111234555555322  577763                  34578888875455444445544433   34


Q ss_pred             EEecCCCEEEEEeCCCCeEEEEEccC
Q 017371          225 ALSRDEDYVVVCESWKFRCRKYWLKG  250 (372)
Q Consensus       225 ~~~~dg~~l~v~~~~~~~i~~~~~~g  250 (372)
                      .|+.||++++.+. .+..||.+..+.
T Consensus       553 sfs~Dgk~IVs~s-eDs~VYiW~~~~  577 (712)
T KOG0283|consen  553 SFSSDGKHIVSAS-EDSWVYIWKNDS  577 (712)
T ss_pred             eEccCCCEEEEee-cCceEEEEeCCC
Confidence            5888999776654 677888887654

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=95.24  E-value=0.53  Score=44.08  Aligned_cols=139  Identities=15%  Similarity=0.162  Sum_probs=76.7

Q ss_pred             CeEEcCCCCEEEEeCCCcE-EEEc-CCC--cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccC
Q 017371          122 GLTSTKEGHLIICDNANGL-HKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKP  197 (372)
Q Consensus       122 gl~~d~dG~l~v~~~~~gv-~~~~-~~g--~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~  197 (372)
                      ++++.+||.|..+.....+ ..+| .+|  +..+.    | -...+.+++++|+|....|-++               ..
T Consensus       308 ~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~----g-H~k~I~~V~fsPNGy~lATgs~---------------Dn  367 (459)
T KOG0272|consen  308 SIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLA----G-HIKEILSVAFSPNGYHLATGSS---------------DN  367 (459)
T ss_pred             eeEecCCCceeeccCccchhheeecccCcEEEEec----c-cccceeeEeECCCceEEeecCC---------------CC
Confidence            8999999998776543333 3355 677  33332    2 2346779999999987776332               12


Q ss_pred             CCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCC
Q 017371          198 HGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT  277 (372)
Q Consensus       198 ~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~  277 (372)
                      .-+||.+... ..+-.+...-..-..|.++|+.+.++++.+.++.+..+...+-  ....... ...+-.-.+.+.+||.
T Consensus       368 t~kVWDLR~r-~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~--~~~ksLa-GHe~kV~s~Dis~d~~  443 (459)
T KOG0272|consen  368 TCKVWDLRMR-SELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW--SPLKSLA-GHEGKVISLDISPDSQ  443 (459)
T ss_pred             cEEEeeeccc-ccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCc--ccchhhc-CCccceEEEEeccCCc
Confidence            3345544432 2222232223334578999977777777766654444332221  1111222 1222344566777887


Q ss_pred             EEEEEec
Q 017371          278 FWIAIIK  284 (372)
Q Consensus       278 lwva~~~  284 (372)
                      ..++..-
T Consensus       444 ~i~t~s~  450 (459)
T KOG0272|consen  444 AIATSSF  450 (459)
T ss_pred             eEEEecc
Confidence            6665543

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=95.16  E-value=1.1  Score=41.91  Aligned_cols=123  Identities=12%  Similarity=0.089  Sum_probs=74.9

Q ss_pred             cCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCC-EEEEeCCCcEEEEc-CCC-cEEEeeecCCc-ccccccceEEcc
Q 017371           97 RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNANGLHKVS-EDG-VENFLSYVNGS-KLRFANDVVEAS  170 (372)
Q Consensus        97 ~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~-l~v~~~~~gv~~~~-~~g-~~~l~~~~~~~-~~~~~~~l~~d~  170 (372)
                      .++.|..||  ......-.+.++... ++....+|. |..+.-+.-+-.+| ..- +...... ++. -..-.+.+.|.|
T Consensus       320 ~DkkvRfwD~Rs~~~~~sv~~gg~vt-Sl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA-~g~k~asDwtrvvfSp  397 (459)
T KOG0288|consen  320 FDKKVRFWDIRSADKTRSVPLGGRVT-SLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSA-EGFKCASDWTRVVFSP  397 (459)
T ss_pred             cccceEEEeccCCceeeEeecCccee-eEeeccCCeEEeeecCCCceeeeecccccEEEEeec-cccccccccceeEECC
Confidence            566666666  333333334455555 777777774 55554344466666 332 3332221 221 112456788888


Q ss_pred             CCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCc---ceEEEecCCCEEEEEeC
Q 017371          171 DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA---NGVALSRDEDYVVVCES  238 (372)
Q Consensus       171 dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~---~gi~~~~dg~~l~v~~~  238 (372)
                      +|....+                 +..+|.||.++..+++.+.+...-..+   ..++|++-|.++.-++.
T Consensus       398 d~~YvaA-----------------GS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk  451 (459)
T KOG0288|consen  398 DGSYVAA-----------------GSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADK  451 (459)
T ss_pred             CCceeee-----------------ccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccC
Confidence            8874443                 447899999999999999877654444   45678888887776654

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=95.13  E-value=2.7  Score=38.83  Aligned_cols=225  Identities=12%  Similarity=0.040  Sum_probs=110.8

Q ss_pred             ccEEEcCCCc-EEEEecCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCCEEEEeCCC-cEEEEc-CCC-cEEEeeec
Q 017371           82 EDASMDKNGV-IYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNAN-GLHKVS-EDG-VENFLSYV  155 (372)
Q Consensus        82 ~~i~~d~~G~-l~v~~~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~-gv~~~~-~~g-~~~l~~~~  155 (372)
                      +-+..-|.+. |..|+.+|.++.|.  ++....+....+.+...=.+-|||...++.... -|..++ .+| ...-....
T Consensus       152 eWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~  231 (399)
T KOG0296|consen  152 EWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQA  231 (399)
T ss_pred             EEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEeccc
Confidence            3344445554 44556788888887  333333333223332122455788654443333 467777 677 22222221


Q ss_pred             CCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCC---------ccCcce---
Q 017371          156 NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG---------FYFANG---  223 (372)
Q Consensus       156 ~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~---------~~~~~g---  223 (372)
                      ++   .....+.+..+|...++                 +...+.++.++..+|++.....+         -...+.   
T Consensus       232 e~---~~~~~~~~~~~~~~~~~-----------------g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~  291 (399)
T KOG0296|consen  232 EG---LELPCISLNLAGSTLTK-----------------GNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVES  291 (399)
T ss_pred             cc---CcCCccccccccceeEe-----------------ccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhh
Confidence            21   12223444444544442                 11233344444444444333221         000111   


Q ss_pred             EEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHH
Q 017371          224 VALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVL  303 (372)
Q Consensus       224 i~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~  303 (372)
                      +.++.+=. |..+..-.++|..|++...   ..+....+..+ .-.+...+...|+.++..                   
T Consensus       292 ~~~ss~lp-L~A~G~vdG~i~iyD~a~~---~~R~~c~he~~-V~~l~w~~t~~l~t~c~~-------------------  347 (399)
T KOG0296|consen  292 IPSSSKLP-LAACGSVDGTIAIYDLAAS---TLRHICEHEDG-VTKLKWLNTDYLLTACAN-------------------  347 (399)
T ss_pred             cccccccc-hhhcccccceEEEEecccc---hhheeccCCCc-eEEEEEcCcchheeeccC-------------------
Confidence            22232322 5555666678888887532   22222222222 233455666667777765                   


Q ss_pred             HhcCccccccccCCCceEEEEEC-CCCcEEEEEECCCCCeeccceeeEEE-CCEEEEEeCCCCeEEEEe
Q 017371          304 AAYPKLFSQFITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQ  370 (372)
Q Consensus       304 ~~~p~~~~~~~~~~~~~~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~L~igs~~~~~i~~~~  370 (372)
                                      |.|..+| ..|+.+..|....-    .+..+... ++++-+.....+..-+++
T Consensus       348 ----------------g~v~~wDaRtG~l~~~y~GH~~----~Il~f~ls~~~~~vvT~s~D~~a~VF~  396 (399)
T KOG0296|consen  348 ----------------GKVRQWDARTGQLKFTYTGHQM----GILDFALSPQKRLVVTVSDDNTALVFE  396 (399)
T ss_pred             ----------------ceEEeeeccccceEEEEecCch----heeEEEEcCCCcEEEEecCCCeEEEEe
Confidence                            6788888 45999988875432    24445544 566666666655555544

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=95.09  E-value=1.4  Score=43.48  Aligned_cols=153  Identities=18%  Similarity=0.215  Sum_probs=77.3

Q ss_pred             cEEEEec-----CCeEEEEe-CCceEEEEecCCCcccCeEEcCCCCEEEEeCCCcEEEEcCCC-cEEEeeecCCcccccc
Q 017371           91 VIYTATR-----DGWIKRLQ-DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDG-VENFLSYVNGSKLRFA  163 (372)
Q Consensus        91 ~l~v~~~-----~g~i~~~~-~g~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~~~g-~~~l~~~~~~~~~~~~  163 (372)
                      .||+.+.     .+..+.+| +|.++............+...++|+|++... ..+..+|..| +... ...++....+-
T Consensus       115 gl~~~~~~~~~~~~~~~~iD~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~-~~~~e~D~~G~v~~~-~~l~~~~~~~H  192 (477)
T PF05935_consen  115 GLYFVNGNDWDSSSYTYLIDNNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG-NRLYEIDLLGKVIWE-YDLPGGYYDFH  192 (477)
T ss_dssp             -EEEEEETT--BEEEEEEEETTS-EEEEE-GGGT--SSEEE-TTS-EEEEEB-TEEEEE-TT--EEEE-EE--TTEE-B-
T ss_pred             cEEEEeCCCCCCCceEEEECCCccEEEEEccCccccceeeEcCCCCEEEecC-CceEEEcCCCCEEEe-eecCCcccccc
Confidence            4666553     56678888 8888755443222220266778999998865 6799999777 3222 23333222345


Q ss_pred             cceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeC---C-----------------------
Q 017371          164 NDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD---G-----------------------  217 (372)
Q Consensus       164 ~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~---~-----------------------  217 (372)
                      +++...++|++.+.....++...    ......-...|+.+| .+|++....+   .                       
T Consensus       193 HD~~~l~nGn~L~l~~~~~~~~~----~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~  267 (477)
T PF05935_consen  193 HDIDELPNGNLLILASETKYVDE----DKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGG  267 (477)
T ss_dssp             S-EEE-TTS-EEEEEEETTEE-T----S-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTT
T ss_pred             cccEECCCCCEEEEEeecccccC----CCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCC
Confidence            68899999987775431111000    000111234578888 5676655321   0                       


Q ss_pred             --ccCcceEEEecCCCEEEEEeCCCCeEEEEEccC
Q 017371          218 --FYFANGVALSRDEDYVVVCESWKFRCRKYWLKG  250 (372)
Q Consensus       218 --~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g  250 (372)
                        ....|++.+++..+.++++....+.|++++..+
T Consensus       268 ~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t  302 (477)
T PF05935_consen  268 RDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRT  302 (477)
T ss_dssp             SBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TT
T ss_pred             CCccccCccEEeCCCCeEEEEcCcceEEEEEECCC
Confidence              112478899996677999998888999998543

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=95.06  E-value=1.2  Score=41.08  Aligned_cols=134  Identities=15%  Similarity=0.134  Sum_probs=83.9

Q ss_pred             eEEEEeCCCCeEEEEeCC-ccCcceEE-EecCC--CEEEEE-eCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcC
Q 017371          200 QLLKYDPSSNITTLVADG-FYFANGVA-LSRDE--DYVVVC-ESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAP  274 (372)
Q Consensus       200 ~v~~~d~~t~~~~~~~~~-~~~~~gi~-~~~dg--~~l~v~-~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~  274 (372)
                      .||.||.++-+.-...+. -..|.|++ +++..  .++-+- .+..+.|+.|+...-  .....+ +...+-...+++++
T Consensus       107 ~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl--~~v~~I-~aH~~~lAalafs~  183 (391)
T KOG2110|consen  107 SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL--QPVNTI-NAHKGPLAALAFSP  183 (391)
T ss_pred             cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccc--eeeeEE-EecCCceeEEEECC
Confidence            489999864332221222 25666654 66544  344443 334567888887643  222222 23344466799999


Q ss_pred             CCCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEEC--CCCcEEEEEECCCCCeeccceeeEEE
Q 017371          275 DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVA--EDGTIIRNLVDPTGQLMSFVTSGLQV  352 (372)
Q Consensus       275 ~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~--~~g~~~~~~~~~~g~~~~~~t~~~~~  352 (372)
                      +|++..+...                                  .|.|+|+-  ++|+.+..|..  |.....+.++.++
T Consensus       184 ~G~llATASe----------------------------------KGTVIRVf~v~~G~kl~eFRR--G~~~~~IySL~Fs  227 (391)
T KOG2110|consen  184 DGTLLATASE----------------------------------KGTVIRVFSVPEGQKLYEFRR--GTYPVSIYSLSFS  227 (391)
T ss_pred             CCCEEEEecc----------------------------------CceEEEEEEcCCccEeeeeeC--CceeeEEEEEEEC
Confidence            9988776655                                  45666653  67888777754  5445567788887


Q ss_pred             -CCEEEEEeCCCCeEEEEeCC
Q 017371          353 -DNHLYVISLTSNFIGKVQLS  372 (372)
Q Consensus       353 -~g~L~igs~~~~~i~~~~~~  372 (372)
                       +..+..++.....|-+++|+
T Consensus       228 ~ds~~L~~sS~TeTVHiFKL~  248 (391)
T KOG2110|consen  228 PDSQFLAASSNTETVHIFKLE  248 (391)
T ss_pred             CCCCeEEEecCCCeEEEEEec
Confidence             56777778888999999875

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.06  E-value=0.63  Score=43.42  Aligned_cols=178  Identities=16%  Similarity=0.162  Sum_probs=87.7

Q ss_pred             cEEEcCCCc-EEEEecCCeEEEEe--CC-ceEEEEecCCCcccCeEEcCCCCEEEEeCCCcEEEEc-CCC--cEEEeeec
Q 017371           83 DASMDKNGV-IYTATRDGWIKRLQ--DG-TWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG--VENFLSYV  155 (372)
Q Consensus        83 ~i~~d~~G~-l~v~~~~g~i~~~~--~g-~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~-~~g--~~~l~~~~  155 (372)
                      .+++..+|. |-++..||.+..++  +- .........+... .|.|.+||.+.+.-.......++ .+|  +..... .
T Consensus       149 ~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~-DL~FS~dgk~lasig~d~~~VW~~~~g~~~a~~t~-~  226 (398)
T KOG0771|consen  149 VVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVK-DLDFSPDGKFLASIGADSARVWSVNTGAALARKTP-F  226 (398)
T ss_pred             EEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccc-cceeCCCCcEEEEecCCceEEEEeccCchhhhcCC-c
Confidence            455555543 33333555444444  11 1111112234556 89999999877775555667777 666  332211 1


Q ss_pred             CC-cccccccceEEccC-CcEEEEeCCCCCCCcccccccccccCCCeEEEEeCC--CC----eEEEEeCCccCcceEEEe
Q 017371          156 NG-SKLRFANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS--SN----ITTLVADGFYFANGVALS  227 (372)
Q Consensus       156 ~~-~~~~~~~~l~~d~d-G~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~--t~----~~~~~~~~~~~~~gi~~~  227 (372)
                      .. ..+...+- -.|++ ..+++.+..               .+.++|..++..  .+    +..........-..++++
T Consensus       227 ~k~~~~~~cRF-~~d~~~~~l~laa~~---------------~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS  290 (398)
T KOG0771|consen  227 SKDEMFSSCRF-SVDNAQETLRLAASQ---------------FPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVS  290 (398)
T ss_pred             ccchhhhhcee-cccCCCceEEEEEec---------------CCCCceeEEEeeeeccccccchhhhhhccCcceeEEEc
Confidence            11 11222211 22222 266665432               134445444432  12    222223334455678999


Q ss_pred             cCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEE
Q 017371          228 RDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIA  281 (372)
Q Consensus       228 ~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva  281 (372)
                      .||+++-+. +..+.|..|....  ......+.....++..++.+-||-+.-..
T Consensus       291 ~dGkf~AlG-T~dGsVai~~~~~--lq~~~~vk~aH~~~VT~ltF~Pdsr~~~s  341 (398)
T KOG0771|consen  291 DDGKFLALG-TMDGSVAIYDAKS--LQRLQYVKEAHLGFVTGLTFSPDSRYLAS  341 (398)
T ss_pred             CCCcEEEEe-ccCCcEEEEEece--eeeeEeehhhheeeeeeEEEcCCcCcccc
Confidence            999955554 4566788887542  22222222223345667777777665554

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.05  E-value=2  Score=38.60  Aligned_cols=117  Identities=13%  Similarity=0.095  Sum_probs=62.3

Q ss_pred             EEecCCCEEEEEeCC----CCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHH
Q 017371          225 ALSRDEDYVVVCESW----KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIK  300 (372)
Q Consensus       225 ~~~~dg~~l~v~~~~----~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r  300 (372)
                      +|++||.+||.++..    .+-|-.|+.. +.......|....- .|..+.+-+||+..+...+.       +...|..-
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r-~~fqrvgE~~t~Gi-GpHev~lm~DGrtlvvanGG-------Iethpdfg  190 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAR-EGFQRVGEFSTHGI-GPHEVTLMADGRTLVVANGG-------IETHPDFG  190 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecc-cccceecccccCCc-CcceeEEecCCcEEEEeCCc-------eecccccC
Confidence            589999999998752    2345566654 23333333332222 38999999999766655441       11111100


Q ss_pred             H--HHHhcCccccccccCCCceEEEEEC-CCCcEEEEEECCCCCeeccceeeEEE-CCEEEEEeC
Q 017371          301 H--VLAAYPKLFSQFITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISL  361 (372)
Q Consensus       301 ~--~~~~~p~~~~~~~~~~~~~~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~L~igs~  361 (372)
                      +  +..   +.++|        .+.-++ .+|++++....|.......+--+..+ +|++|+|.-
T Consensus       191 R~~lNl---dsMeP--------Slvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQ  244 (366)
T COG3490         191 RTELNL---DSMEP--------SLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQ  244 (366)
T ss_pred             ccccch---hhcCc--------cEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEE
Confidence            0  000   01111        344455 67888776555533222234444443 689998864

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=94.96  E-value=1.2  Score=40.36  Aligned_cols=70  Identities=16%  Similarity=0.137  Sum_probs=47.2

Q ss_pred             ccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCc-ceEEEecCCCEEEEEeCCCC
Q 017371          163 ANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA-NGVALSRDEDYVVVCESWKF  241 (372)
Q Consensus       163 ~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~-~gi~~~~dg~~l~v~~~~~~  241 (372)
                      .+.+.|.+.|.+...                 +-.+|+|..||..|-.+..+......| ..++|++||+.| ++.+.+.
T Consensus        26 a~~~~Fs~~G~~lAv-----------------Gc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~L-ltsS~D~   87 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAV-----------------GCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKL-LTSSRDW   87 (405)
T ss_pred             cceEEeccCcceeee-----------------eccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEe-eeecCCc
Confidence            445667777765442                 446899999998876554444443334 578999999854 5555667


Q ss_pred             eEEEEEccC
Q 017371          242 RCRKYWLKG  250 (372)
Q Consensus       242 ~i~~~~~~g  250 (372)
                      .|..+++..
T Consensus        88 si~lwDl~~   96 (405)
T KOG1273|consen   88 SIKLWDLLK   96 (405)
T ss_pred             eeEEEeccC
Confidence            788888753

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=94.95  E-value=2.3  Score=38.31  Aligned_cols=144  Identities=16%  Similarity=0.220  Sum_probs=81.9

Q ss_pred             ccEEEcCCCcEEEEe-cCCeEEEEe-CCceEEEEe--c-CCCcccCeEEcCCCCEEE-EeCCCcEEEEc-CCC--cEEEe
Q 017371           82 EDASMDKNGVIYTAT-RDGWIKRLQ-DGTWVNWKF--I-DSQTLVGLTSTKEGHLII-CDNANGLHKVS-EDG--VENFL  152 (372)
Q Consensus        82 ~~i~~d~~G~l~v~~-~~g~i~~~~-~g~~~~~~~--~-~~~p~~gl~~d~dG~l~v-~~~~~gv~~~~-~~g--~~~l~  152 (372)
                      -.+.++|+|..+++. .|..|+-|+ .|.-+.+..  . .+-.. ++.+.+|++..+ +..++.++.+| +.|  ...+.
T Consensus        51 ~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM-~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k  129 (338)
T KOG0265|consen   51 YTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVM-ELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHK  129 (338)
T ss_pred             EEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeE-eeeeccCCCEEEEecCCceEEEEecccceeeehhc
Confidence            347788999887766 788899888 554443321  1 22344 888889997544 45567899999 777  33221


Q ss_pred             eecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCE
Q 017371          153 SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDY  232 (372)
Q Consensus       153 ~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~  232 (372)
                      .  .   ..+.|.+....-|-..++..+                .++.+-.+|..+++.......-..-..+.|..++..
T Consensus       130 ~--h---~~~vNs~~p~rrg~~lv~Sgs----------------dD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~q  188 (338)
T KOG0265|consen  130 G--H---TSFVNSLDPSRRGPQLVCSGS----------------DDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQ  188 (338)
T ss_pred             c--c---cceeeecCccccCCeEEEecC----------------CCceEEEEeecccchhhccccceeEEEEEecccccc
Confidence            1  1   135666665556655554332                556677777654433222222222335666655554


Q ss_pred             EEEEeCCCCeEEEEEc
Q 017371          233 VVVCESWKFRCRKYWL  248 (372)
Q Consensus       233 l~v~~~~~~~i~~~~~  248 (372)
                      ++... -++.|..+++
T Consensus       189 v~sgg-Idn~ikvWd~  203 (338)
T KOG0265|consen  189 VISGG-IDNDIKVWDL  203 (338)
T ss_pred             eeecc-ccCceeeecc
Confidence            44333 3445666665

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=94.92  E-value=2.5  Score=39.80  Aligned_cols=83  Identities=13%  Similarity=0.241  Sum_probs=56.2

Q ss_pred             CCCeEEEEeCCCCeEEEEeCCccCc-ceEEEecCCCEEEEEeCC----CCeEEEEEcc-CCCCcceeeeccCCCCCCc-e
Q 017371          197 PHGQLLKYDPSSNITTLVADGFYFA-NGVALSRDEDYVVVCESW----KFRCRKYWLK-GERKGKLETFAENLPGAPD-N  269 (372)
Q Consensus       197 ~~g~v~~~d~~t~~~~~~~~~~~~~-~gi~~~~dg~~l~v~~~~----~~~i~~~~~~-g~~~~~~~~~~~~~~g~p~-~  269 (372)
                      +...|+.++.+++..+.+-.+-..- .-+.++++++.+|+..+.    ...|+++.++ +   +..+.+... . ... .
T Consensus       258 G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~---~~~~~LT~~-~-~~~~~  332 (353)
T PF00930_consen  258 GYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG---GEPKCLTCE-D-GDHYS  332 (353)
T ss_dssp             SSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET---TEEEESSTT-S-STTEE
T ss_pred             CCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC---CCeEeccCC-C-CCceE
Confidence            5678999999877766554443333 246689999999998775    3579999987 4   333444322 2 234 7


Q ss_pred             eEEcCCCCEEEEEec
Q 017371          270 INLAPDGTFWIAIIK  284 (372)
Q Consensus       270 i~~d~~G~lwva~~~  284 (372)
                      +.++++|++++-...
T Consensus       333 ~~~Spdg~y~v~~~s  347 (353)
T PF00930_consen  333 ASFSPDGKYYVDTYS  347 (353)
T ss_dssp             EEE-TTSSEEEEEEE
T ss_pred             EEECCCCCEEEEEEc
Confidence            899999999887765

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=94.90  E-value=4.4  Score=41.07  Aligned_cols=181  Identities=14%  Similarity=0.135  Sum_probs=96.8

Q ss_pred             CCCCccEEEcCCCcEEEEecCCeEEEEe-C-Cc-eEEEEecCCCcccCeEEcCCCCEEEEeCCCc-EEEEc-CCC--cEE
Q 017371           78 VNHPEDASMDKNGVIYTATRDGWIKRLQ-D-GT-WVNWKFIDSQTLVGLTSTKEGHLIICDNANG-LHKVS-EDG--VEN  150 (372)
Q Consensus        78 ~~~p~~i~~d~~G~l~v~~~~g~i~~~~-~-g~-~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~g-v~~~~-~~g--~~~  150 (372)
                      -...+++++..+..+..+..++.|..|+ + .+ ++++  +++..+ +-.|-|.++..|.....| +..++ .+.  ++.
T Consensus       373 R~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi--~~~y~l-~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Et  449 (888)
T KOG0306|consen  373 RSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTI--TCGYIL-ASKFVPGDRYIVLGTKNGELQVFDLASASLVET  449 (888)
T ss_pred             hhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEe--ccccEE-EEEecCCCceEEEeccCCceEEEEeehhhhhhh
Confidence            3567788888765444444677777777 3 32 3333  344555 666666555444444444 66666 443  333


Q ss_pred             EeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeC-----CCCeEEEEe-----CCccC
Q 017371          151 FLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDP-----SSNITTLVA-----DGFYF  220 (372)
Q Consensus       151 l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~-----~t~~~~~~~-----~~~~~  220 (372)
                      +.. ..    ..+..|+..||++=+++-+                 .+..|-.+|.     ..|..+.+.     ..+..
T Consensus       450 i~A-Hd----gaIWsi~~~pD~~g~vT~s-----------------aDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel  507 (888)
T KOG0306|consen  450 IRA-HD----GAIWSISLSPDNKGFVTGS-----------------ADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLEL  507 (888)
T ss_pred             hhc-cc----cceeeeeecCCCCceEEec-----------------CCcEEEEEeEEEEeccCcccceeeeeccceEEec
Confidence            321 11    2345677777777666533                 2222222221     001111100     11222


Q ss_pred             c---ceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEecCch
Q 017371          221 A---NGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDA  287 (372)
Q Consensus       221 ~---~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~  287 (372)
                      +   -.+.++|||++|-|+- -++.|..|.+++-+.. ...+...+|  .-.|-+.+|+++.|++...++
T Consensus       508 ~ddvL~v~~Spdgk~LaVsL-LdnTVkVyflDtlKFf-lsLYGHkLP--V~smDIS~DSklivTgSADKn  573 (888)
T KOG0306|consen  508 EDDVLCVSVSPDGKLLAVSL-LDNTVKVYFLDTLKFF-LSLYGHKLP--VLSMDISPDSKLIVTGSADKN  573 (888)
T ss_pred             cccEEEEEEcCCCcEEEEEe-ccCeEEEEEecceeee-eeecccccc--eeEEeccCCcCeEEeccCCCc
Confidence            2   2567999999766665 5678999998764211 122222333  346777888999998877654

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=94.68  E-value=0.82  Score=42.69  Aligned_cols=172  Identities=14%  Similarity=0.198  Sum_probs=94.8

Q ss_pred             EEEcCCC-cEEEEecCCeEEEEeC-C-ceEEEEecCCCcccCeEEcCCCCEEEEeCCCcEEEEc-CCC--cEEEeeecCC
Q 017371           84 ASMDKNG-VIYTATRDGWIKRLQD-G-TWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG--VENFLSYVNG  157 (372)
Q Consensus        84 i~~d~~G-~l~v~~~~g~i~~~~~-g-~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~-~~g--~~~l~~~~~~  157 (372)
                      +...++| +|.+|+..|....|+. . .++.+...-..|..++.+..+|...|+....|.+++- ++-  +..+    ..
T Consensus       102 v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~----~a  177 (464)
T KOG0284|consen  102 VRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKII----QA  177 (464)
T ss_pred             EEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHh----hH
Confidence            5556776 6777877775555541 1 1222222223444478888888877765556666655 321  2211    11


Q ss_pred             cccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCC-ccCcceEEEecCCCEEEEE
Q 017371          158 SKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSRDEDYVVVC  236 (372)
Q Consensus       158 ~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~-~~~~~gi~~~~dg~~l~v~  236 (372)
                      .....+.++++.++...++|-+                 .+|+|...|..-.+-+.+..+ ...+..+.|+|... |+++
T Consensus       178 hh~eaIRdlafSpnDskF~t~S-----------------dDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kg-Lias  239 (464)
T KOG0284|consen  178 HHAEAIRDLAFSPNDSKFLTCS-----------------DDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKG-LIAS  239 (464)
T ss_pred             hhhhhhheeccCCCCceeEEec-----------------CCCeEEEEeccCCchhheeccCCCCcceeccCCccc-eeEE
Confidence            1113577899999888777643                 567777777654444444333 34566789999876 7777


Q ss_pred             eCCCCeEEEEE-ccCCCCcce-eeeccCCCCCCceeEEcCCCCEEEEE
Q 017371          237 ESWKFRCRKYW-LKGERKGKL-ETFAENLPGAPDNINLAPDGTFWIAI  282 (372)
Q Consensus       237 ~~~~~~i~~~~-~~g~~~~~~-~~~~~~~~g~p~~i~~d~~G~lwva~  282 (372)
                      ..-++ +.++| ..   .++. .... ......-++.+.++||+..+.
T Consensus       240 gskDn-lVKlWDpr---Sg~cl~tlh-~HKntVl~~~f~~n~N~Llt~  282 (464)
T KOG0284|consen  240 GSKDN-LVKLWDPR---SGSCLATLH-GHKNTVLAVKFNPNGNWLLTG  282 (464)
T ss_pred             ccCCc-eeEeecCC---Ccchhhhhh-hccceEEEEEEcCCCCeeEEc
Confidence            66555 55554 32   2221 0000 011113456677777655554

>PHA02713 hypothetical protein; Provisional

Probab=94.68  E-value=2.2  Score=43.01  Aligned_cols=155  Identities=11%  Similarity=0.107  Sum_probs=73.7

Q ss_pred             CCcEEEEec-C------CeEEEEe--CCceEEEEecC-CCcccCeEEcCCCCEEEEeCCC------cEEEEc-CCC-cEE
Q 017371           89 NGVIYTATR-D------GWIKRLQ--DGTWVNWKFID-SQTLVGLTSTKEGHLIICDNAN------GLHKVS-EDG-VEN  150 (372)
Q Consensus        89 ~G~l~v~~~-~------g~i~~~~--~g~~~~~~~~~-~~p~~gl~~d~dG~l~v~~~~~------gv~~~~-~~g-~~~  150 (372)
                      +|.||+... +      ..+++++  .+.|.....-. .+...+++. -+|.||+.....      .+.++| .++ ...
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~-~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~  381 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAV-IDDTIYAIGGQNGTNVERTIECYTMGDDKWKM  381 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEE-ECCEEEEECCcCCCCCCceEEEEECCCCeEEE
Confidence            567887642 1      2467787  55555443211 111113333 368999875432      256677 334 443


Q ss_pred             EeeecCCcccccccceEEccCCcEEEEeCCCCCC---Ccccccc--cc-cccCCCeEEEEeCCCCeEEEEeCCc--cCcc
Q 017371          151 FLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYL---PHEYCLD--IL-EGKPHGQLLKYDPSSNITTLVADGF--YFAN  222 (372)
Q Consensus       151 l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~---~~~~~~~--~~-~~~~~g~v~~~d~~t~~~~~~~~~~--~~~~  222 (372)
                      ++.. +...  .-.+++ .-+|+||+.-......   .......  .. .......+.+|||.+.+++.+..-.  ....
T Consensus       382 ~~~m-p~~r--~~~~~~-~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~  457 (557)
T PHA02713        382 LPDM-PIAL--SSYGMC-VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRP  457 (557)
T ss_pred             CCCC-Cccc--ccccEE-EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccC
Confidence            3221 1111  111222 3479999953210000   0000000  00 0011356999999999887765321  1122


Q ss_pred             eEEEecCCCEEEEEeCCC------CeEEEEEccC
Q 017371          223 GVALSRDEDYVVVCESWK------FRCRKYWLKG  250 (372)
Q Consensus       223 gi~~~~dg~~l~v~~~~~------~~i~~~~~~g  250 (372)
                      +++.. ++ .+|+....+      ..+.+|++..
T Consensus       458 ~~~~~-~~-~IYv~GG~~~~~~~~~~ve~Ydp~~  489 (557)
T PHA02713        458 GVVSH-KD-DIYVVCDIKDEKNVKTCIFRYNTNT  489 (557)
T ss_pred             cEEEE-CC-EEEEEeCCCCCCccceeEEEecCCC
Confidence            34332 34 588875321      2477898764

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=94.60  E-value=3.2  Score=37.82  Aligned_cols=144  Identities=9%  Similarity=0.021  Sum_probs=76.8

Q ss_pred             cCCCcEEEEe-cCCeEEEEe--CCceEEE----Ee--cCCCcccCeEEcCCCCEEEEeCCCcEEEEc--CCC--cEEEee
Q 017371           87 DKNGVIYTAT-RDGWIKRLQ--DGTWVNW----KF--IDSQTLVGLTSTKEGHLIICDNANGLHKVS--EDG--VENFLS  153 (372)
Q Consensus        87 d~~G~l~v~~-~~g~i~~~~--~g~~~~~----~~--~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~--~~g--~~~l~~  153 (372)
                      +|+-.+|..+ .+.-|..||  +|+.+.-    ..  ..-... .|.|.+||.-.++...+-|..++  +.|  -.+...
T Consensus       120 qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAh-sL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t  198 (406)
T KOG2919|consen  120 QPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAH-SLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTT  198 (406)
T ss_pred             CCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhhe-eEEecCCCCeEeecccceEEEeeccCCCCCCcchhh
Confidence            3555677666 455677787  7765421    11  111235 88999999866666566688887  445  232222


Q ss_pred             ec---CCcccccccceEEccCC-cEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCC-ccCcceEEEec
Q 017371          154 YV---NGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSR  228 (372)
Q Consensus       154 ~~---~~~~~~~~~~l~~d~dG-~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~-~~~~~gi~~~~  228 (372)
                      -.   .+. ...+..+++.|-. +.+..-+   |+            ..-+||.-|.  +..-.+.-+ -..-.-+.+.+
T Consensus       199 ~~~~k~gq-~giisc~a~sP~~~~~~a~gs---Y~------------q~~giy~~~~--~~pl~llggh~gGvThL~~~e  260 (406)
T KOG2919|consen  199 VTKGKFGQ-KGIISCFAFSPMDSKTLAVGS---YG------------QRVGIYNDDG--RRPLQLLGGHGGGVTHLQWCE  260 (406)
T ss_pred             hhcccccc-cceeeeeeccCCCCcceeeec---cc------------ceeeeEecCC--CCceeeecccCCCeeeEEecc
Confidence            11   111 1233445565532 2222111   00            1123444332  222222211 11223467999


Q ss_pred             CCCEEEEEeCCCCeEEEEEcc
Q 017371          229 DEDYVVVCESWKFRCRKYWLK  249 (372)
Q Consensus       229 dg~~l~v~~~~~~~i~~~~~~  249 (372)
                      ||+.||....-...|..+++.
T Consensus       261 dGn~lfsGaRk~dkIl~WDiR  281 (406)
T KOG2919|consen  261 DGNKLFSGARKDDKILCWDIR  281 (406)
T ss_pred             CcCeecccccCCCeEEEEeeh
Confidence            999999988888899999985

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=94.57  E-value=1.4  Score=41.14  Aligned_cols=162  Identities=16%  Similarity=0.218  Sum_probs=85.3

Q ss_pred             cCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCCEEEEeCC-CcEEEEc-CCC-cEEEeeecCCcccccccceEEccC
Q 017371           97 RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASD  171 (372)
Q Consensus        97 ~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~-~gv~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~d~d  171 (372)
                      .+..|..|+  +|+.-.-..-....+ ++.+..||.++++... +.|..+| ..| +..-.....|.   .+....+-.+
T Consensus       152 ~Dn~v~iWnv~tgeali~l~hpd~i~-S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~---k~~Raifl~~  227 (472)
T KOG0303|consen  152 SDNTVSIWNVGTGEALITLDHPDMVY-SMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGA---KPARAIFLAS  227 (472)
T ss_pred             CCceEEEEeccCCceeeecCCCCeEE-EEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCC---CcceeEEecc
Confidence            455566666  443221112223446 8889999999888655 5688888 556 22211222232   2333445567


Q ss_pred             CcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEE---EecCCCEEEEEeCCCCeEEEEEc
Q 017371          172 GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVA---LSRDEDYVVVCESWKFRCRKYWL  248 (372)
Q Consensus       172 G~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~---~~~dg~~l~v~~~~~~~i~~~~~  248 (372)
                      |.|+.| ..++.             ..-.+-..|++.-+.-.....+...||+.   +++|.+.+|++.-++..|..|.+
T Consensus       228 g~i~tT-Gfsr~-------------seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEi  293 (472)
T KOG0303|consen  228 GKIFTT-GFSRM-------------SERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEI  293 (472)
T ss_pred             Cceeee-ccccc-------------cccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEe
Confidence            775443 22111             11223344544222222333455567765   58999999999998888887777


Q ss_pred             cCCC--CcceeeeccCCCCCCceeEEcCCCCE
Q 017371          249 KGER--KGKLETFAENLPGAPDNINLAPDGTF  278 (372)
Q Consensus       249 ~g~~--~~~~~~~~~~~~g~p~~i~~d~~G~l  278 (372)
                      ....  ......|....|  -.||.+-+.-.+
T Consensus       294 t~d~P~~hyln~f~S~ep--QRG~g~mPKRGl  323 (472)
T KOG0303|consen  294 TNEPPFVHYLNTFSSKEP--QRGMGFMPKRGL  323 (472)
T ss_pred             cCCCceeEEecccccCCc--cccccccccccc
Confidence            5442  233333433333  245555444333

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=94.56  E-value=3.1  Score=36.81  Aligned_cols=217  Identities=10%  Similarity=0.101  Sum_probs=114.6

Q ss_pred             CCCCCCccEEEcCCC-cEEEEecCCeEEEEe-CC-ce-EEEE-ec-CCCcccCeEEcCCC-CEEEE-eCCCcEEEEc-CC
Q 017371           76 GSVNHPEDASMDKNG-VIYTATRDGWIKRLQ-DG-TW-VNWK-FI-DSQTLVGLTSTKEG-HLIIC-DNANGLHKVS-ED  146 (372)
Q Consensus        76 g~~~~p~~i~~d~~G-~l~v~~~~g~i~~~~-~g-~~-~~~~-~~-~~~p~~gl~~d~dG-~l~v~-~~~~gv~~~~-~~  146 (372)
                      +....-++++...+| .|-.+..++.+..++ ++ +. ..+. .. .+..- .++.++.. .++.+ ..++.+..+| ..
T Consensus        18 ~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svd-ql~w~~~~~d~~atas~dk~ir~wd~r~   96 (313)
T KOG1407|consen   18 GHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVD-QLCWDPKHPDLFATASGDKTIRIWDIRS   96 (313)
T ss_pred             hhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchh-hheeCCCCCcceEEecCCceEEEEEecc
Confidence            445567888998888 565666777777776 32 21 1111 11 12233 67777544 44444 4446688888 66


Q ss_pred             C--cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceE
Q 017371          147 G--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGV  224 (372)
Q Consensus       147 g--~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi  224 (372)
                      +  ...+..  .+    ....+...|+|+-.+.                 +.....|-.+|..+-+...-.....+.|-+
T Consensus        97 ~k~~~~i~~--~~----eni~i~wsp~g~~~~~-----------------~~kdD~it~id~r~~~~~~~~~~~~e~ne~  153 (313)
T KOG1407|consen   97 GKCTARIET--KG----ENINITWSPDGEYIAV-----------------GNKDDRITFIDARTYKIVNEEQFKFEVNEI  153 (313)
T ss_pred             CcEEEEeec--cC----cceEEEEcCCCCEEEE-----------------ecCcccEEEEEecccceeehhcccceeeee
Confidence            6  222211  11    1234567777753321                 124556777776544333222334556788


Q ss_pred             EEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEec-CchhHHHHhhcchhHHHH-
Q 017371          225 ALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK-LDARRMKILNSSKLIKHV-  302 (372)
Q Consensus       225 ~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~-~~~~~~~~~~~~~~~r~~-  302 (372)
                      .+.-+++ +++..++.+.|......  .+.....+. ..+..--.|.+|++|+++....+ ...++||.       -.+ 
T Consensus       154 ~w~~~nd-~Fflt~GlG~v~ILsyp--sLkpv~si~-AH~snCicI~f~p~GryfA~GsADAlvSLWD~-------~ELi  222 (313)
T KOG1407|consen  154 SWNNSND-LFFLTNGLGCVEILSYP--SLKPVQSIK-AHPSNCICIEFDPDGRYFATGSADALVSLWDV-------DELI  222 (313)
T ss_pred             eecCCCC-EEEEecCCceEEEEecc--ccccccccc-cCCcceEEEEECCCCceEeeccccceeeccCh-------hHhh
Confidence            8886776 77777777777765432  222222221 12222233778999986655433 33344442       232 


Q ss_pred             HHh-cCccccccccCCCceEEEEECCCCcEEEE
Q 017371          303 LAA-YPKLFSQFITLGGGAHLIHVAEDGTIIRN  334 (372)
Q Consensus       303 ~~~-~p~~~~~~~~~~~~~~v~~~~~~g~~~~~  334 (372)
                      +.+ +++.-+|+       +-+-|+-+|+.+.+
T Consensus       223 C~R~isRldwpV-------RTlSFS~dg~~lAS  248 (313)
T KOG1407|consen  223 CERCISRLDWPV-------RTLSFSHDGRMLAS  248 (313)
T ss_pred             hheeeccccCce-------EEEEeccCcceeec
Confidence            333 33333443       45556666766654

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=94.54  E-value=1.1  Score=42.98  Aligned_cols=132  Identities=14%  Similarity=0.174  Sum_probs=73.7

Q ss_pred             CeEEcCCCCEEEEeCCCc-EEEEc-CCC--cEEEeeecCCcccccccceEEccCC-cEEEEeCCCCCCCccccccccccc
Q 017371          122 GLTSTKEGHLIICDNANG-LHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGK  196 (372)
Q Consensus       122 gl~~d~dG~l~v~~~~~g-v~~~~-~~g--~~~l~~~~~~~~~~~~~~l~~d~dG-~i~vtd~~~~~~~~~~~~~~~~~~  196 (372)
                      .|++.+|-++.++.-..| |..+| .+.  ++.+    .|-. .....|.+.+|| +||-                  +.
T Consensus       514 ALa~spDakvcFsccsdGnI~vwDLhnq~~Vrqf----qGht-DGascIdis~dGtklWT------------------GG  570 (705)
T KOG0639|consen  514 ALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQF----QGHT-DGASCIDISKDGTKLWT------------------GG  570 (705)
T ss_pred             hhhcCCccceeeeeccCCcEEEEEcccceeeecc----cCCC-CCceeEEecCCCceeec------------------CC
Confidence            677888888766644444 66677 544  4443    3321 134468888899 7886                  33


Q ss_pred             CCCeEEEEeCCCCeEEEEeCCccCc---ceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEc
Q 017371          197 PHGQLLKYDPSSNITTLVADGFYFA---NGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLA  273 (372)
Q Consensus       197 ~~g~v~~~d~~t~~~~~~~~~~~~~---~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d  273 (372)
                      .++.|..+|..++..  +.. ..|.   -.+...|.+.+|.|.- .++.++.....++..-+.    .....-.-.+.+.
T Consensus       571 lDntvRcWDlregrq--lqq-hdF~SQIfSLg~cP~~dWlavGM-ens~vevlh~skp~kyql----hlheScVLSlKFa  642 (705)
T KOG0639|consen  571 LDNTVRCWDLREGRQ--LQQ-HDFSSQIFSLGYCPTGDWLAVGM-ENSNVEVLHTSKPEKYQL----HLHESCVLSLKFA  642 (705)
T ss_pred             Cccceeehhhhhhhh--hhh-hhhhhhheecccCCCccceeeec-ccCcEEEEecCCccceee----cccccEEEEEEec
Confidence            567788888764432  111 1111   1234567777776654 344577666544311111    0111112346788


Q ss_pred             CCCCEEEEEec
Q 017371          274 PDGTFWIAIIK  284 (372)
Q Consensus       274 ~~G~lwva~~~  284 (372)
                      .-|..||++..
T Consensus       643 ~cGkwfvStGk  653 (705)
T KOG0639|consen  643 YCGKWFVSTGK  653 (705)
T ss_pred             ccCceeeecCc
Confidence            89999998865

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=94.45  E-value=4.8  Score=38.50  Aligned_cols=97  Identities=7%  Similarity=0.116  Sum_probs=57.5

Q ss_pred             EEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccc
Q 017371          233 VVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQ  312 (372)
Q Consensus       233 l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~  312 (372)
                      ...+...+..|..++...+  .....|..+. .-...+++.++|.+..+..-                            
T Consensus       424 ~l~sas~dstV~lwdv~~g--v~i~~f~kH~-~pVysvafS~~g~ylAsGs~----------------------------  472 (524)
T KOG0273|consen  424 MLASASFDSTVKLWDVESG--VPIHTLMKHQ-EPVYSVAFSPNGRYLASGSL----------------------------  472 (524)
T ss_pred             eEEEeecCCeEEEEEccCC--ceeEeeccCC-CceEEEEecCCCcEEEecCC----------------------------
Confidence            3333444556777776532  1223343221 11456888999976554433                            


Q ss_pred             cccCCCceEEEEEC-CCCcEEEEEECCCCCeeccceeeEEE-CCEEEEEeCCCCeEEEEeC
Q 017371          313 FITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL  371 (372)
Q Consensus       313 ~~~~~~~~~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~L~igs~~~~~i~~~~~  371 (372)
                            .++|.--+ +.|++.+.+.+..+     +..+.-. +|....+......+.+++|
T Consensus       473 ------dg~V~iws~~~~~l~~s~~~~~~-----Ifel~Wn~~G~kl~~~~sd~~vcvldl  522 (524)
T KOG0273|consen  473 ------DGCVHIWSTKTGKLVKSYQGTGG-----IFELCWNAAGDKLGACASDGSVCVLDL  522 (524)
T ss_pred             ------CCeeEeccccchheeEeecCCCe-----EEEEEEcCCCCEEEEEecCCCceEEEe
Confidence                  34555445 56888888887554     4455553 5777778888888888875

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=94.39  E-value=6.4  Score=39.74  Aligned_cols=92  Identities=11%  Similarity=0.085  Sum_probs=48.7

Q ss_pred             EEEcCCCcEEE-EecCCeEEEEe-CCceEEEEe-cCCCcccCeEEcCCCCE---EEEeCCCcEEEEc-CCCcEEEeeecC
Q 017371           84 ASMDKNGVIYT-ATRDGWIKRLQ-DGTWVNWKF-IDSQTLVGLTSTKEGHL---IICDNANGLHKVS-EDGVENFLSYVN  156 (372)
Q Consensus        84 i~~d~~G~l~v-~~~~g~i~~~~-~g~~~~~~~-~~~~p~~gl~~d~dG~l---~v~~~~~gv~~~~-~~g~~~l~~~~~  156 (372)
                      +++++.|.+.. |..+|.+..|| .+...+... ..+.+...+.|.++-+.   +.+..+..+..++ .++-. ......
T Consensus       111 ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t-cl~~~~  189 (775)
T KOG0319|consen  111 MAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRT-CLHTMI  189 (775)
T ss_pred             EEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCch-HHHHHH
Confidence            78888775543 44799999999 554333322 22444437788876543   3333333455666 33311 000000


Q ss_pred             CcccccccceEEccCCcEEEE
Q 017371          157 GSKLRFANDVVEASDGSLYFT  177 (372)
Q Consensus       157 ~~~~~~~~~l~~d~dG~i~vt  177 (372)
                      . ......++++.+|+.-.++
T Consensus       190 ~-H~S~vtsL~~~~d~~~~ls  209 (775)
T KOG0319|consen  190 L-HKSAVTSLAFSEDSLELLS  209 (775)
T ss_pred             h-hhhheeeeeeccCCceEEE
Confidence            0 1124457788777765554

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=94.25  E-value=1.6  Score=39.41  Aligned_cols=118  Identities=15%  Similarity=0.164  Sum_probs=75.5

Q ss_pred             CCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcc-eeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhh
Q 017371          216 DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGK-LETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILN  294 (372)
Q Consensus       216 ~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~-~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~  294 (372)
                      +....-|-+.|+|... ++++.+.++.|.-|+..-....+ .+.|.+..+  ...|.+-+.|.+.+....          
T Consensus       170 DH~devn~l~FHPre~-ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~--vrsiSfHPsGefllvgTd----------  236 (430)
T KOG0640|consen  170 DHVDEVNDLDFHPRET-ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEP--VRSISFHPSGEFLLVGTD----------  236 (430)
T ss_pred             hccCcccceeecchhh-eEEeccCCCeEEEEecccHHHHHHHHHhhccce--eeeEeecCCCceEEEecC----------
Confidence            3444567899999876 88888888889989875432221 233433332  467888999965544333          


Q ss_pred             cchhHHHHHHhcCccccccccCCCceEEEEECCCCcEEEEEECCCCCeeccceeeEEE-CCEEEEEeCCCCeEEEEe
Q 017371          295 SSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQ  370 (372)
Q Consensus       295 ~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~L~igs~~~~~i~~~~  370 (372)
                                              +..+--||-+.-....-..|+.+....+++|... .++||+.......|-.+|
T Consensus       237 ------------------------Hp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwD  289 (430)
T KOG0640|consen  237 ------------------------HPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWD  289 (430)
T ss_pred             ------------------------CCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeec
Confidence                                    2344555544433333344666666678888887 489999988877776554

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=94.20  E-value=6.3  Score=38.93  Aligned_cols=203  Identities=15%  Similarity=0.124  Sum_probs=103.2

Q ss_pred             CceEecCCCCCCCccEEEcCCCcEEEEe--cCCeEEEEe--CCc-eEEEEecCCCcccCeEEcCCCC---EEEEeCCCcE
Q 017371           69 DFIKVGEGSVNHPEDASMDKNGVIYTAT--RDGWIKRLQ--DGT-WVNWKFIDSQTLVGLTSTKEGH---LIICDNANGL  140 (372)
Q Consensus        69 ~~~~~~~g~~~~p~~i~~d~~G~l~v~~--~~g~i~~~~--~g~-~~~~~~~~~~p~~gl~~d~dG~---l~v~~~~~gv  140 (372)
                      ....+..|.-....+|.+|+.| .|+++  .+|.|..|.  +|. ++++.. .+... .+++.|.++   |.|+... .+
T Consensus       391 ~~~lvyrGHtg~Vr~iSvdp~G-~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~-~vaw~P~~~~~vLAvA~~~-~~  466 (733)
T KOG0650|consen  391 RCALVYRGHTGLVRSISVDPSG-EWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIR-SVAWNPLSDLCVLAVAVGE-CV  466 (733)
T ss_pred             eeeeeEeccCCeEEEEEecCCc-ceeeecCCCCcEEEEEeecceEEEEEee-cceeE-EEEecCCCCceeEEEEecC-ce
Confidence            4445555655568899999976 44444  677555555  553 333322 23344 666666554   2222222 24


Q ss_pred             EEEc-CCC--cEE------Eeee-cC-----------------C--------cccccccceEEccCCcEEEEeCCCCCCC
Q 017371          141 HKVS-EDG--VEN------FLSY-VN-----------------G--------SKLRFANDVVEASDGSLYFTVSSSKYLP  185 (372)
Q Consensus       141 ~~~~-~~g--~~~------l~~~-~~-----------------~--------~~~~~~~~l~~d~dG~i~vtd~~~~~~~  185 (372)
                      +.++ .=|  ++.      +... .+                 .        .....++.|....+|..+.+.       
T Consensus       467 ~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV-------  539 (733)
T KOG0650|consen  467 LIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATV-------  539 (733)
T ss_pred             EEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEe-------
Confidence            4444 111  111      1100 00                 0        011234455555555533332       


Q ss_pred             cccccccccccCCCeEEEEeCCCCeEEEEe-CCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCC
Q 017371          186 HEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLP  264 (372)
Q Consensus       186 ~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~-~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~  264 (372)
                             .....+-+|+.++.+......-+ .--..+..+.|+|..-+++|+...  .|..|++....+.  .... ...
T Consensus       540 -------~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~--~vRiYdL~kqelv--KkL~-tg~  607 (733)
T KOG0650|consen  540 -------MPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQR--SVRIYDLSKQELV--KKLL-TGS  607 (733)
T ss_pred             -------ccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEecc--ceEEEehhHHHHH--HHHh-cCC
Confidence                   22334556777776532222111 112235678899998889998654  4777776422111  1111 111


Q ss_pred             CCCceeEEcCCC-CEEEEEecCchhHHHHhh
Q 017371          265 GAPDNINLAPDG-TFWIAIIKLDARRMKILN  294 (372)
Q Consensus       265 g~p~~i~~d~~G-~lwva~~~~~~~~~~~~~  294 (372)
                      -..+.|++++.| ||.+++...+.-++|+-.
T Consensus       608 kwiS~msihp~GDnli~gs~d~k~~WfDldl  638 (733)
T KOG0650|consen  608 KWISSMSIHPNGDNLILGSYDKKMCWFDLDL  638 (733)
T ss_pred             eeeeeeeecCCCCeEEEecCCCeeEEEEccc
Confidence            246788888888 788888777666666533

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=94.07  E-value=0.22  Score=30.91  Aligned_cols=40  Identities=13%  Similarity=0.025  Sum_probs=30.0

Q ss_pred             EEEEEeCCCC-eEEEEEccCCCCcceeeeccCCCCCCceeEEcC
Q 017371          232 YVVVCESWKF-RCRKYWLKGERKGKLETFAENLPGAPDNINLAP  274 (372)
Q Consensus       232 ~l~v~~~~~~-~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~  274 (372)
                      .+||++.... .|.+-+++|..   .+.+....-..|.+|++|.
T Consensus         2 ~iYWtD~~~~~~I~~a~~dGs~---~~~vi~~~l~~P~giaVD~   42 (42)
T PF00058_consen    2 KIYWTDWSQDPSIERANLDGSN---RRTVISDDLQHPEGIAVDW   42 (42)
T ss_dssp             EEEEEETTTTEEEEEEETTSTS---EEEEEESSTSSEEEEEEET
T ss_pred             EEEEEECCCCcEEEEEECCCCC---eEEEEECCCCCcCEEEECC
Confidence            5999999999 99999999853   3333333344699999984

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=94.03  E-value=6  Score=38.03  Aligned_cols=84  Identities=14%  Similarity=0.023  Sum_probs=47.3

Q ss_pred             CCCeEEEEeCCCCeEEEEeCCccCc--ceEEEecCCCEEEEEeCCC----------CeEEEEEccCCCCcceeeeccCCC
Q 017371          197 PHGQLLKYDPSSNITTLVADGFYFA--NGVALSRDEDYVVVCESWK----------FRCRKYWLKGERKGKLETFAENLP  264 (372)
Q Consensus       197 ~~g~v~~~d~~t~~~~~~~~~~~~~--~gi~~~~dg~~l~v~~~~~----------~~i~~~~~~g~~~~~~~~~~~~~~  264 (372)
                      ....|+.+|.++|+...  +.+..+  .+++|.+|++.+|.+....          .+|+++.+.+.......+|-....
T Consensus       148 e~~~l~v~Dl~tg~~l~--d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~  225 (414)
T PF02897_consen  148 EWYTLRVFDLETGKFLP--DGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDE  225 (414)
T ss_dssp             SEEEEEEEETTTTEEEE--EEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTC
T ss_pred             ceEEEEEEECCCCcCcC--CcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCC
Confidence            33568889998886533  232222  2389999998888776433          347777775443222344433222


Q ss_pred             CC-CceeEEcCCCCEEEEE
Q 017371          265 GA-PDNINLAPDGTFWIAI  282 (372)
Q Consensus       265 g~-p~~i~~d~~G~lwva~  282 (372)
                      .+ --++..++||++.+-.
T Consensus       226 ~~~~~~~~~s~d~~~l~i~  244 (414)
T PF02897_consen  226 PFWFVSVSRSKDGRYLFIS  244 (414)
T ss_dssp             TTSEEEEEE-TTSSEEEEE
T ss_pred             CcEEEEEEecCcccEEEEE
Confidence            22 3367778888754433

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=93.94  E-value=1.1  Score=46.33  Aligned_cols=152  Identities=14%  Similarity=0.169  Sum_probs=88.5

Q ss_pred             CCCCCCccEEEc-CCCcEEEEe--cCCeEEEEe--CCc-eEEEEecCCCcccCeEEc------CCCCEEEEeCCCcEEEE
Q 017371           76 GSVNHPEDASMD-KNGVIYTAT--RDGWIKRLQ--DGT-WVNWKFIDSQTLVGLTST------KEGHLIICDNANGLHKV  143 (372)
Q Consensus        76 g~~~~p~~i~~d-~~G~l~v~~--~~g~i~~~~--~g~-~~~~~~~~~~p~~gl~~d------~dG~l~v~~~~~gv~~~  143 (372)
                      |....|..+... .+-.+.+-+  ....|+++|  .|+ ++.|......|...++-+      .....+++-..++++++
T Consensus       478 g~~~~P~k~mL~~~d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfri  557 (794)
T PF08553_consen  478 GKNFTPKKAMLHDQDRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRI  557 (794)
T ss_pred             CcccCcchhhhhccccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEe
Confidence            444567665554 344676666  356799999  565 566765433322133322      12356787777899999


Q ss_pred             c-C-CCcEEEeee-cCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccC
Q 017371          144 S-E-DGVENFLSY-VNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYF  220 (372)
Q Consensus       144 ~-~-~g~~~l~~~-~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~  220 (372)
                      | + .|...+... ..-........++.+.+|+|-|+.                  ..|.|..||.-+...+....++..
T Consensus       558 DpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs------------------~~G~IRLyd~~g~~AKT~lp~lG~  619 (794)
T PF08553_consen  558 DPRLSGNKLVDSQSKQYSSKNNFSCFATTEDGYIAVGS------------------NKGDIRLYDRLGKRAKTALPGLGD  619 (794)
T ss_pred             ccCCCCCceeeccccccccCCCceEEEecCCceEEEEe------------------CCCcEEeecccchhhhhcCCCCCC
Confidence            9 3 341111111 011111223467888999998864                  467777787544444445556666


Q ss_pred             c-ceEEEecCCCEEEEEeCCCCeEEEEE
Q 017371          221 A-NGVALSRDEDYVVVCESWKFRCRKYW  247 (372)
Q Consensus       221 ~-~gi~~~~dg~~l~v~~~~~~~i~~~~  247 (372)
                      | .||.++.||++++.+-. . -|..++
T Consensus       620 pI~~iDvt~DGkwilaTc~-t-yLlLi~  645 (794)
T PF08553_consen  620 PIIGIDVTADGKWILATCK-T-YLLLID  645 (794)
T ss_pred             CeeEEEecCCCcEEEEeec-c-eEEEEE
Confidence            6 48999999997766543 3 354444

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG4328 consensus WD40 protein [Function unknown]

Probab=93.87  E-value=6.2  Score=37.63  Aligned_cols=85  Identities=16%  Similarity=0.157  Sum_probs=48.8

Q ss_pred             cceEEEecCCCEEEEEeCCCCeEEEEEcc--CCCCcceeeec-cCCCC---CCceeEEcCCCCEEEEEecCchhHHHHhh
Q 017371          221 ANGVALSRDEDYVVVCESWKFRCRKYWLK--GERKGKLETFA-ENLPG---APDNINLAPDGTFWIAIIKLDARRMKILN  294 (372)
Q Consensus       221 ~~gi~~~~dg~~l~v~~~~~~~i~~~~~~--g~~~~~~~~~~-~~~~g---~p~~i~~d~~G~lwva~~~~~~~~~~~~~  294 (372)
                      -+...|+|++.. +++...+++|..|+..  +.+......+. .+..|   .|--.+.|++-++.+...-+         
T Consensus       372 V~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~---------  441 (498)
T KOG4328|consen  372 VNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYP---------  441 (498)
T ss_pred             eeeeEEcCCCCc-eEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccC---------
Confidence            466779999886 6677778888888753  11111111111 11111   13445678877755554431         


Q ss_pred             cchhHHHHHHhcCccccccccCCCceEEEEECCCCcE-EEEEECCCC
Q 017371          295 SSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTI-IRNLVDPTG  340 (372)
Q Consensus       295 ~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~g~~-~~~~~~~~g  340 (372)
                                               ..|-.||++|+. +..+++|.-
T Consensus       442 -------------------------r~IDv~~~~~~q~v~el~~P~~  463 (498)
T KOG4328|consen  442 -------------------------RPIDVFDGNGGQMVCELHDPES  463 (498)
T ss_pred             -------------------------cceeEEcCCCCEEeeeccCccc
Confidence                                     247778887655 667788764

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=93.83  E-value=4.5  Score=35.85  Aligned_cols=138  Identities=15%  Similarity=0.076  Sum_probs=78.5

Q ss_pred             cccceEEccCC-cEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCCC
Q 017371          162 FANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK  240 (372)
Q Consensus       162 ~~~~l~~d~dG-~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~  240 (372)
                      ....++.++.. .++++.+                 +.-.+.++|..+++.......-..-.-+.++|+|+++.+.+. .
T Consensus        66 svdql~w~~~~~d~~atas-----------------~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~k-d  127 (313)
T KOG1407|consen   66 SVDQLCWDPKHPDLFATAS-----------------GDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNK-D  127 (313)
T ss_pred             chhhheeCCCCCcceEEec-----------------CCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecC-c
Confidence            45567777654 5555544                 344577777665555443333334456889999998887764 6


Q ss_pred             CeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEecC-chhHHHHhhcchhHHHHHHhcCccccccccCCCc
Q 017371          241 FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKL-DARRMKILNSSKLIKHVLAAYPKLFSQFITLGGG  319 (372)
Q Consensus       241 ~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~-~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~  319 (372)
                      ++|..++....+....+.+    .-..+.+....++++++.+.+. ...    +..||.|+.+..        +.+++-+
T Consensus       128 D~it~id~r~~~~~~~~~~----~~e~ne~~w~~~nd~Fflt~GlG~v~----ILsypsLkpv~s--------i~AH~sn  191 (313)
T KOG1407|consen  128 DRITFIDARTYKIVNEEQF----KFEVNEISWNNSNDLFFLTNGLGCVE----ILSYPSLKPVQS--------IKAHPSN  191 (313)
T ss_pred             ccEEEEEecccceeehhcc----cceeeeeeecCCCCEEEEecCCceEE----EEeccccccccc--------cccCCcc
Confidence            6788888754433222222    1235677777888888887662 111    222333333322        2234444


Q ss_pred             eEEEEECCCCcEEE
Q 017371          320 AHLIHVAEDGTIIR  333 (372)
Q Consensus       320 ~~v~~~~~~g~~~~  333 (372)
                      -.-++++|+|+.+.
T Consensus       192 CicI~f~p~GryfA  205 (313)
T KOG1407|consen  192 CICIEFDPDGRYFA  205 (313)
T ss_pred             eEEEEECCCCceEe
Confidence            55566677776654

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.78  E-value=6.7  Score=37.70  Aligned_cols=151  Identities=14%  Similarity=0.124  Sum_probs=70.0

Q ss_pred             CeEEcCCCCEEE-E-eCC-C---cEEEEc-CCCcEEEeeecCCcccccccceEEccCCcE-EEEeCCCCCCCcccccccc
Q 017371          122 GLTSTKEGHLII-C-DNA-N---GLHKVS-EDGVENFLSYVNGSKLRFANDVVEASDGSL-YFTVSSSKYLPHEYCLDIL  193 (372)
Q Consensus       122 gl~~d~dG~l~v-~-~~~-~---gv~~~~-~~g~~~l~~~~~~~~~~~~~~l~~d~dG~i-~vtd~~~~~~~~~~~~~~~  193 (372)
                      ++.+.|||+++. + +.+ .   .++.+| ++| +.+...+...   ....+.+.+||+. |++.... .....      
T Consensus       128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg-~~l~d~i~~~---~~~~~~W~~d~~~~~y~~~~~-~~~~~------  196 (414)
T PF02897_consen  128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG-KFLPDGIENP---KFSSVSWSDDGKGFFYTRFDE-DQRTS------  196 (414)
T ss_dssp             EEEETTTSSEEEEEEEETTSSEEEEEEEETTTT-EEEEEEEEEE---ESEEEEECTTSSEEEEEECST-TTSS-------
T ss_pred             eeeECCCCCEEEEEecCCCCceEEEEEEECCCC-cCcCCccccc---ccceEEEeCCCCEEEEEEeCc-ccccc------
Confidence            466778997433 2 222 1   266677 666 1111221211   1113788888754 4443210 00000      


Q ss_pred             cccCCCeEEEEeCCCCeEE--EEeCCccCcc---eEEEecCCCEEEEEeCCC---CeEEEEEccCC--CCcceeeeccCC
Q 017371          194 EGKPHGQLLKYDPSSNITT--LVADGFYFAN---GVALSRDEDYVVVCESWK---FRCRKYWLKGE--RKGKLETFAENL  263 (372)
Q Consensus       194 ~~~~~g~v~~~d~~t~~~~--~~~~~~~~~~---gi~~~~dg~~l~v~~~~~---~~i~~~~~~g~--~~~~~~~~~~~~  263 (372)
                      .......|+++...+...+  .+...-..+.   ++..++|++++++.....   ..++.+++...  .......+....
T Consensus       197 ~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~  276 (414)
T PF02897_consen  197 DSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRE  276 (414)
T ss_dssp             CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESS
T ss_pred             cCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCC
Confidence            0011446888887665433  4554433333   678899999988754333   35777776543  122333333322


Q ss_pred             CCCCceeEEcCCCCEEEEEec
Q 017371          264 PGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       264 ~g~p~~i~~d~~G~lwva~~~  284 (372)
                      .+. ........+.+|+-+..
T Consensus       277 ~~~-~~~v~~~~~~~yi~Tn~  296 (414)
T PF02897_consen  277 DGV-EYYVDHHGDRLYILTND  296 (414)
T ss_dssp             SS--EEEEEEETTEEEEEE-T
T ss_pred             Cce-EEEEEccCCEEEEeeCC
Confidence            221 11122224567876654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=93.77  E-value=2.6  Score=40.38  Aligned_cols=64  Identities=22%  Similarity=0.375  Sum_probs=35.4

Q ss_pred             cceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcce--eeecc--------------CCCCCCceeEEcCCC-CEEEEEe
Q 017371          221 ANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKL--ETFAE--------------NLPGAPDNINLAPDG-TFWIAII  283 (372)
Q Consensus       221 ~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~--~~~~~--------------~~~g~p~~i~~d~~G-~lwva~~  283 (372)
                      +.-|.+|.|.++||++....+.|..|++..+..-+.  +++..              .+.|.|.=+.+.-|| ++||++.
T Consensus       314 itDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS  393 (461)
T PF05694_consen  314 ITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS  393 (461)
T ss_dssp             ---EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred             eEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence            456889999999999999999999999987532211  11111              133457778899999 7999875


Q ss_pred             c
Q 017371          284 K  284 (372)
Q Consensus       284 ~  284 (372)
                      -
T Consensus       394 L  394 (461)
T PF05694_consen  394 L  394 (461)
T ss_dssp             -
T ss_pred             c
Confidence            3

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=93.77  E-value=10  Score=39.71  Aligned_cols=117  Identities=14%  Similarity=0.204  Sum_probs=61.9

Q ss_pred             CCcEEEEecCCeEEEEe--CCceEEEEecCCCc----------ccCeEEc-----------------CCCCEEEEeCCCc
Q 017371           89 NGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQT----------LVGLTST-----------------KEGHLIICDNANG  139 (372)
Q Consensus        89 ~G~l~v~~~~g~i~~~~--~g~~~~~~~~~~~p----------~~gl~~d-----------------~dG~l~v~~~~~g  139 (372)
                      +|.||+++.++.|+.+|  +|+. .|......+          . |++.-                 .++++|+.+.+..
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~-lW~~d~~~~~~~~~~~~~cR-Gvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~  271 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKE-KWKFDPKLKTEAGRQHQTCR-GVSYYDAPAAAAGPAAPAAPADCARRIILPTSDAR  271 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcE-EEEEcCCCCccccccccccc-ceEEecCCcccccccccccccccCCEEEEecCCCe
Confidence            68999999999999999  6763 333211110          1 22221                 2347888876666


Q ss_pred             EEEEc-CCCcEE--Eee--------ecCCcc--cccc-cceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEe
Q 017371          140 LHKVS-EDGVEN--FLS--------YVNGSK--LRFA-NDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYD  205 (372)
Q Consensus       140 v~~~~-~~g~~~--l~~--------~~~~~~--~~~~-~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d  205 (372)
                      |+.+| ++|...  +..        .....+  .... ..-.+ -+|.|+++.+....        .......|.|+.||
T Consensus       272 LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V-~~g~VIvG~~v~d~--------~~~~~~~G~I~A~D  342 (764)
T TIGR03074       272 LIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLV-AGTTVVIGGRVADN--------YSTDEPSGVIRAFD  342 (764)
T ss_pred             EEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEE-ECCEEEEEeccccc--------ccccCCCcEEEEEE
Confidence            88888 677222  111        000000  0000 01111 25677776432100        01113568899999


Q ss_pred             CCCCeEEEEeC
Q 017371          206 PSSNITTLVAD  216 (372)
Q Consensus       206 ~~t~~~~~~~~  216 (372)
                      .+||+..+..+
T Consensus       343 a~TGkl~W~~~  353 (764)
T TIGR03074       343 VNTGALVWAWD  353 (764)
T ss_pred             CCCCcEeeEEe
Confidence            99998877543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats

Probab=93.71  E-value=0.068  Score=28.75  Aligned_cols=17  Identities=29%  Similarity=0.522  Sum_probs=13.5

Q ss_pred             CceeEEcCCCCEEEEEe
Q 017371          267 PDNINLAPDGTFWIAII  283 (372)
Q Consensus       267 p~~i~~d~~G~lwva~~  283 (372)
                      ...|..|++|+||+++.
T Consensus         7 I~~i~~D~~G~lWigT~   23 (24)
T PF07494_consen    7 IYSIYEDSDGNLWIGTY   23 (24)
T ss_dssp             EEEEEE-TTSCEEEEET
T ss_pred             EEEEEEcCCcCEEEEeC
Confidence            45688999999999985

These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=93.67  E-value=5  Score=35.89  Aligned_cols=154  Identities=16%  Similarity=0.086  Sum_probs=81.0

Q ss_pred             CCccEEEcCCCcEEEE-e---cCCeEEEEe-CCceEEEEecCCCcccCeEEcCCCCEEEEeCCCcEEE-E-c-CCC-cEE
Q 017371           80 HPEDASMDKNGVIYTA-T---RDGWIKRLQ-DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHK-V-S-EDG-VEN  150 (372)
Q Consensus        80 ~p~~i~~d~~G~l~v~-~---~~g~i~~~~-~g~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~-~-~-~~g-~~~  150 (372)
                      .+++.++.++|..+.. .   ....|+... ++....+. ...... ...+|++|.+|+.+......+ + + .+| ...
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~-~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~  102 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLT-RPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP  102 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccc-cccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence            6778888888854332 2   334455555 55554443 222333 677999999999976543322 2 2 344 332


Q ss_pred             EeeecCCcccccccceEEccCC-cEEEEeCCCCCCCcccccccccccCCCeEEEEe---CCCCeEEE------Ee-CCcc
Q 017371          151 FLSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYD---PSSNITTL------VA-DGFY  219 (372)
Q Consensus       151 l~~~~~~~~~~~~~~l~~d~dG-~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d---~~t~~~~~------~~-~~~~  219 (372)
                      ..-....... .+..|.+.+|| ++-+.-               +....++|+.--   ...+....      +. ....
T Consensus       103 ~~v~~~~~~~-~I~~l~vSpDG~RvA~v~---------------~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~  166 (253)
T PF10647_consen  103 VEVDWPGLRG-RITALRVSPDGTRVAVVV---------------EDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLS  166 (253)
T ss_pred             EEecccccCC-ceEEEEECCCCcEEEEEE---------------ecCCCCeEEEEEEEeCCCCCcceeccceEecccccC
Confidence            2222222111 56788999999 443321               111234555431   11231111      11 2233


Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEE-EEccCC
Q 017371          220 FANGVALSRDEDYVVVCESWKFRCRK-YWLKGE  251 (372)
Q Consensus       220 ~~~gi~~~~dg~~l~v~~~~~~~i~~-~~~~g~  251 (372)
                      ....++|..+++.++........+.. +..+|.
T Consensus       167 ~v~~v~W~~~~~L~V~~~~~~~~~~~~v~~dG~  199 (253)
T PF10647_consen  167 DVTDVAWSDDSTLVVLGRSAGGPVVRLVSVDGG  199 (253)
T ss_pred             cceeeeecCCCEEEEEeCCCCCceeEEEEccCC
Confidence            45678999888755555555555666 666664

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=93.67  E-value=9.6  Score=39.16  Aligned_cols=141  Identities=13%  Similarity=0.169  Sum_probs=81.1

Q ss_pred             CCcccCeEEcCCCCEEEEeCCCc-EEEEc-CCC-cE-EEeeecCCcccccccceEEccCCcEEEEeCCCCCCCccccccc
Q 017371          117 SQTLVGLTSTKEGHLIICDNANG-LHKVS-EDG-VE-NFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDI  192 (372)
Q Consensus       117 ~~p~~gl~~d~dG~l~v~~~~~g-v~~~~-~~g-~~-~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~  192 (372)
                      .... .++++.-|+.-+.....| |-+++ .+| .+ .+... + .....+.++++|.-+++.++..             
T Consensus       449 ~~~~-av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~-~-ah~~~V~gla~D~~n~~~vsa~-------------  512 (910)
T KOG1539|consen  449 INAT-AVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDS-P-AHKGEVTGLAVDGTNRLLVSAG-------------  512 (910)
T ss_pred             cceE-EEEEeccCceEEEeccCCeEEEEEcccCeeecccccC-c-cccCceeEEEecCCCceEEEcc-------------
Confidence            3445 788888898666554444 66777 677 22 22111 0 1113567899999999888743             


Q ss_pred             ccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEE
Q 017371          193 LEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINL  272 (372)
Q Consensus       193 ~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~  272 (372)
                          .+|-+-.+|...+....-..--..+.++..+.... +++.....-.|..||.-+.+..+  .|- ........+++
T Consensus       513 ----~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~-l~a~~~ddf~I~vvD~~t~kvvR--~f~-gh~nritd~~F  584 (910)
T KOG1539|consen  513 ----ADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSD-LLAIALDDFSIRVVDVVTRKVVR--EFW-GHGNRITDMTF  584 (910)
T ss_pred             ----CcceEEEEecCCcceeeeeccCCCcceeeeeehhh-hhhhhcCceeEEEEEchhhhhhH--Hhh-ccccceeeeEe
Confidence                45666667765444322222233455666665554 55555556678888865433221  222 22334678999


Q ss_pred             cCCCCEEEE
Q 017371          273 APDGTFWIA  281 (372)
Q Consensus       273 d~~G~lwva  281 (372)
                      .+||+-.++
T Consensus       585 S~DgrWlis  593 (910)
T KOG1539|consen  585 SPDGRWLIS  593 (910)
T ss_pred             CCCCcEEEE
Confidence            999974443

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=93.66  E-value=2.4  Score=41.75  Aligned_cols=114  Identities=12%  Similarity=0.172  Sum_probs=60.4

Q ss_pred             EEEcCCCcEEEEecCCeEEEEe-CCceE-EEEecCCC---cccCeEEcCCCCEEEEeC--------------CCcEEEEc
Q 017371           84 ASMDKNGVIYTATRDGWIKRLQ-DGTWV-NWKFIDSQ---TLVGLTSTKEGHLIICDN--------------ANGLHKVS  144 (372)
Q Consensus        84 i~~d~~G~l~v~~~~g~i~~~~-~g~~~-~~~~~~~~---p~~gl~~d~dG~l~v~~~--------------~~gv~~~~  144 (372)
                      +..-++|.++++.. ..+..+| .|++. .+..+.+.   .+ .+...++|++++...              ...|+.++
T Consensus       153 ~~~l~nG~ll~~~~-~~~~e~D~~G~v~~~~~l~~~~~~~HH-D~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd  230 (477)
T PF05935_consen  153 FKQLPNGNLLIGSG-NRLYEIDLLGKVIWEYDLPGGYYDFHH-DIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD  230 (477)
T ss_dssp             EEE-TTS-EEEEEB-TEEEEE-TT--EEEEEE--TTEE-B-S--EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-
T ss_pred             eeEcCCCCEEEecC-CceEEEcCCCCEEEeeecCCccccccc-ccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC
Confidence            55667888888765 6788888 77643 33333222   35 788889998766544              23588888


Q ss_pred             CCC--cEEEee--ecCCc--------------------ccccccceEEcc-CCcEEEEeCCCCCCCcccccccccccCCC
Q 017371          145 EDG--VENFLS--YVNGS--------------------KLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHG  199 (372)
Q Consensus       145 ~~g--~~~l~~--~~~~~--------------------~~~~~~~l~~d~-dG~i~vtd~~~~~~~~~~~~~~~~~~~~g  199 (372)
                      ++|  +..+..  .+...                    .-...|++..++ ++.|.+|-                 +...
T Consensus       231 ~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSs-----------------R~~s  293 (477)
T PF05935_consen  231 PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSS-----------------RHQS  293 (477)
T ss_dssp             TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEE-----------------TTT-
T ss_pred             CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEc-----------------Ccce
Confidence            777  333321  11000                    012456788887 77888863                 2455


Q ss_pred             eEEEEeCCCCeEEEEeC
Q 017371          200 QLLKYDPSSNITTLVAD  216 (372)
Q Consensus       200 ~v~~~d~~t~~~~~~~~  216 (372)
                      .|+++|..++++.+++.
T Consensus       294 ~V~~Id~~t~~i~Wilg  310 (477)
T PF05935_consen  294 AVIKIDYRTGKIKWILG  310 (477)
T ss_dssp             EEEEEE-TTS-EEEEES
T ss_pred             EEEEEECCCCcEEEEeC
Confidence            89999988899887663

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=93.63  E-value=4.3  Score=35.05  Aligned_cols=184  Identities=14%  Similarity=0.121  Sum_probs=86.5

Q ss_pred             CCCccEEEcCCCcEEEEecCCeEEEEe------C---C-ceE------EE---EecCCCcccCeEEcCCCCEEEEeCCCc
Q 017371           79 NHPEDASMDKNGVIYTATRDGWIKRLQ------D---G-TWV------NW---KFIDSQTLVGLTSTKEGHLIICDNANG  139 (372)
Q Consensus        79 ~~p~~i~~d~~G~l~v~~~~g~i~~~~------~---g-~~~------~~---~~~~~~p~~gl~~d~dG~l~v~~~~~g  139 (372)
                      ..-+.+++-|+|.||....+.+-+|+-      +   + +..      ..   ..--+..+ ..++.++|.|..+.....
T Consensus        33 qairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiy-c~~ws~~geliatgsndk  111 (350)
T KOG0641|consen   33 QAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIY-CTAWSPCGELIATGSNDK  111 (350)
T ss_pred             hheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEE-EEEecCccCeEEecCCCc
Confidence            456788999999999766555555442      1   1 000      00   11123445 778889998877755432


Q ss_pred             ---EEEEcCC-----CcEEEeeecCCcccccccceEEc--c--CCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCC
Q 017371          140 ---LHKVSED-----GVENFLSYVNGSKLRFANDVVEA--S--DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS  207 (372)
Q Consensus       140 ---v~~~~~~-----g~~~l~~~~~~~~~~~~~~l~~d--~--dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~  207 (372)
                         ++.++.+     |...-.....|    .+.++++-  +  .|.|.++-                +.++-.||.-|-.
T Consensus       112 ~ik~l~fn~dt~~~~g~dle~nmhdg----tirdl~fld~~~s~~~il~s~----------------gagdc~iy~tdc~  171 (350)
T KOG0641|consen  112 TIKVLPFNADTCNATGHDLEFNMHDG----TIRDLAFLDDPESGGAILASA----------------GAGDCKIYITDCG  171 (350)
T ss_pred             eEEEEecccccccccCcceeeeecCC----ceeeeEEecCCCcCceEEEec----------------CCCcceEEEeecC
Confidence               4444411     10000011111    23444442  1  23455432                2234456666655


Q ss_pred             CCeEEEEeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcce--eeeccC-C-CCCCceeEEcCCCCEEEEEe
Q 017371          208 SNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKL--ETFAEN-L-PGAPDNINLAPDGTFWIAII  283 (372)
Q Consensus       208 t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~--~~~~~~-~-~g~p~~i~~d~~G~lwva~~  283 (372)
                      +|+--....+.. -.-+++..-.+.++++.+.+..|..+++.-+..-+.  ..|.+. + ..-...+++|+.|++.++..
T Consensus       172 ~g~~~~a~sght-ghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~  250 (350)
T KOG0641|consen  172 RGQGFHALSGHT-GHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGH  250 (350)
T ss_pred             CCCcceeecCCc-ccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeecc
Confidence            444322222111 112444444445677766655555445432110000  011110 1 11234588999999999876


Q ss_pred             c
Q 017371          284 K  284 (372)
Q Consensus       284 ~  284 (372)
                      .
T Consensus       251 ~  251 (350)
T KOG0641|consen  251 A  251 (350)
T ss_pred             C
Confidence            5

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=93.30  E-value=2.8  Score=40.63  Aligned_cols=75  Identities=16%  Similarity=0.094  Sum_probs=48.9

Q ss_pred             CeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCCC--CeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCC
Q 017371          199 GQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK--FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDG  276 (372)
Q Consensus       199 g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~--~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G  276 (372)
                      .+++.+|.++++...+.+-....-..+|+|||+.+.++...+  ..|+.+++.+....+    ..+..|.-..-...+||
T Consensus       218 ~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~----Lt~~~gi~~~Ps~spdG  293 (425)
T COG0823         218 PRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR----LTNGFGINTSPSWSPDG  293 (425)
T ss_pred             ceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee----cccCCccccCccCCCCC
Confidence            579999998888877766333333467999999999887654  457888887654222    22333333344567888


Q ss_pred             C
Q 017371          277 T  277 (372)
Q Consensus       277 ~  277 (372)
                      .
T Consensus       294 ~  294 (425)
T COG0823         294 S  294 (425)
T ss_pred             C
Confidence            5

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=93.19  E-value=5.1  Score=40.45  Aligned_cols=145  Identities=19%  Similarity=0.248  Sum_probs=77.3

Q ss_pred             CCcEEEEe-cC------CeEEEEe--CCceEEEEecC-CCcccCeEEcCCCCEEEEeCCCc------EEEEcC-CC-cEE
Q 017371           89 NGVIYTAT-RD------GWIKRLQ--DGTWVNWKFID-SQTLVGLTSTKEGHLIICDNANG------LHKVSE-DG-VEN  150 (372)
Q Consensus        89 ~G~l~v~~-~~------g~i~~~~--~g~~~~~~~~~-~~p~~gl~~d~dG~l~v~~~~~g------v~~~~~-~g-~~~  150 (372)
                      +|.||+.. .+      ..+.+||  .++|...+.-. .+...|++.- +|.||+.....|      +-++|+ .. .+.
T Consensus       332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l-~g~iYavGG~dg~~~l~svE~YDp~~~~W~~  410 (571)
T KOG4441|consen  332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL-DGKLYAVGGFDGEKSLNSVECYDPVTNKWTP  410 (571)
T ss_pred             CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE-CCEEEEEeccccccccccEEEecCCCCcccc
Confidence            56888765 33      2456676  45555533211 1211155554 688998865433      556663 33 444


Q ss_pred             EeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCc--ceEEEec
Q 017371          151 FLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA--NGVALSR  228 (372)
Q Consensus       151 l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~--~gi~~~~  228 (372)
                      .+....   .+.-.++++ -+|+||+.-...           .....-..+.+|||.+++++.+..-...-  .|++.. 
T Consensus       411 va~m~~---~r~~~gv~~-~~g~iYi~GG~~-----------~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~-  474 (571)
T KOG4441|consen  411 VAPMLT---RRSGHGVAV-LGGKLYIIGGGD-----------GSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL-  474 (571)
T ss_pred             cCCCCc---ceeeeEEEE-ECCEEEEEcCcC-----------CCccccceEEEEcCCCCceeecCCcccccccceEEEE-
Confidence            432211   112223333 579999963210           00002357899999999988765433222  344433 


Q ss_pred             CCCEEEEEeCCC-----CeEEEEEccCC
Q 017371          229 DEDYVVVCESWK-----FRCRKYWLKGE  251 (372)
Q Consensus       229 dg~~l~v~~~~~-----~~i~~~~~~g~  251 (372)
                       ++.+|+....+     ..|.+|++...
T Consensus       475 -~~~iYvvGG~~~~~~~~~VE~ydp~~~  501 (571)
T KOG4441|consen  475 -NGKIYVVGGFDGTSALSSVERYDPETN  501 (571)
T ss_pred             -CCEEEEECCccCCCccceEEEEcCCCC
Confidence             44688876432     34888887654

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=93.18  E-value=7.4  Score=36.38  Aligned_cols=27  Identities=22%  Similarity=0.287  Sum_probs=18.9

Q ss_pred             CCCccEEEcCCCc-EEEEecCCeEEEEe
Q 017371           79 NHPEDASMDKNGV-IYTATRDGWIKRLQ  105 (372)
Q Consensus        79 ~~p~~i~~d~~G~-l~v~~~~g~i~~~~  105 (372)
                      ...-+++..|||. |-.|..+|.|..|+
T Consensus       158 ~WVlcvawsPDgk~iASG~~dg~I~lwd  185 (480)
T KOG0271|consen  158 NWVLCVAWSPDGKKIASGSKDGSIRLWD  185 (480)
T ss_pred             cEEEEEEECCCcchhhccccCCeEEEec
Confidence            3455677888884 44455788888888

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=93.12  E-value=0.52  Score=28.78  Aligned_cols=31  Identities=19%  Similarity=0.087  Sum_probs=22.4

Q ss_pred             CCCeEEEEeCCCCeEEEEeCCccCcceEEEe
Q 017371          197 PHGQLLKYDPSSNITTLVADGFYFANGVALS  227 (372)
Q Consensus       197 ~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~  227 (372)
                      ..+.|..+|+.+++..........|.+++++
T Consensus        12 ~~~~v~~id~~~~~~~~~i~vg~~P~~i~~~   42 (42)
T TIGR02276        12 GSNTVSVIDTATNKVIATIPVGGYPFGVAVS   42 (42)
T ss_pred             CCCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence            4678999999877765544445778888764

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=93.10  E-value=8.6  Score=36.91  Aligned_cols=219  Identities=10%  Similarity=0.074  Sum_probs=110.4

Q ss_pred             CccEEEcCCCcEEEE-ecCCeEEEEe-CCc--eEEEEecCCCcccCeEEcCC-CCEEEEeCCCcEEEEc-CCC-cEEEee
Q 017371           81 PEDASMDKNGVIYTA-TRDGWIKRLQ-DGT--WVNWKFIDSQTLVGLTSTKE-GHLIICDNANGLHKVS-EDG-VENFLS  153 (372)
Q Consensus        81 p~~i~~d~~G~l~v~-~~~g~i~~~~-~g~--~~~~~~~~~~p~~gl~~d~d-G~l~v~~~~~gv~~~~-~~g-~~~l~~  153 (372)
                      ..++.+-.||.|..+ +..|-|..|| +.+  .+.+.. ...|..-..|.+. +.+++...+.++.++. .++ ..+.  
T Consensus        71 v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~a-h~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~--  147 (487)
T KOG0310|consen   71 VYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYA-HQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQA--  147 (487)
T ss_pred             eeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhh-ccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEE--
Confidence            455667678877654 4677777777 221  111111 1223314555544 4566665556666665 444 2111  


Q ss_pred             ecCCcccccccceEEcc-CCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCc-ceEEEecCCC
Q 017371          154 YVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA-NGVALSRDED  231 (372)
Q Consensus       154 ~~~~~~~~~~~~l~~d~-dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~-~gi~~~~dg~  231 (372)
                      ...+. --++...++.+ +++|.+|-                 .-+|.|-.+|..+....++.-+...| ..+.+-|.|.
T Consensus       148 ~l~~h-tDYVR~g~~~~~~~hivvtG-----------------sYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs  209 (487)
T KOG0310|consen  148 ELSGH-TDYVRCGDISPANDHIVVTG-----------------SYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGS  209 (487)
T ss_pred             EecCC-cceeEeeccccCCCeEEEec-----------------CCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCC
Confidence            11111 12344455544 45677763                 34677777776544322221122223 2345556665


Q ss_pred             EEEEEeCCCCeEEEEEcc-CCCCcceeeeccCCCCCCceeEEcCCCC-EEEEEecCchhHHHHhhcchhHHHHHHhcCcc
Q 017371          232 YVVVCESWKFRCRKYWLK-GERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKL  309 (372)
Q Consensus       232 ~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~  309 (372)
                       ++++- +++.|..+|+. |.+.-.  .+. +.......+++.++++ |+-+...                         
T Consensus       210 -~iasA-gGn~vkVWDl~~G~qll~--~~~-~H~KtVTcL~l~s~~~rLlS~sLD-------------------------  259 (487)
T KOG0310|consen  210 -LIASA-GGNSVKVWDLTTGGQLLT--SMF-NHNKTVTCLRLASDSTRLLSGSLD-------------------------  259 (487)
T ss_pred             -EEEEc-CCCeEEEEEecCCceehh--hhh-cccceEEEEEeecCCceEeecccc-------------------------
Confidence             55554 45668888876 332111  111 1112246678888874 4444433                         


Q ss_pred             ccccccCCCceEEEEEC-CCCcEEEEEECCCCCeeccceeeEEECCEEEEEeCCC
Q 017371          310 FSQFITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTS  363 (372)
Q Consensus       310 ~~~~~~~~~~~~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~igs~~~  363 (372)
                                +.+-.|+ .+-++++.+.-|.+. +  ..++..++.++++|-.++
T Consensus       260 ----------~~VKVfd~t~~Kvv~s~~~~~pv-L--siavs~dd~t~viGmsnG  301 (487)
T KOG0310|consen  260 ----------RHVKVFDTTNYKVVHSWKYPGPV-L--SIAVSPDDQTVVIGMSNG  301 (487)
T ss_pred             ----------cceEEEEccceEEEEeeecccce-e--eEEecCCCceEEEecccc
Confidence                      4566666 466777777665432 1  122333457888887554

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=92.98  E-value=6.4  Score=35.16  Aligned_cols=144  Identities=16%  Similarity=0.133  Sum_probs=72.6

Q ss_pred             CcccCeEEcCCCCEEEE-e---CCCcEEEEcCCC-cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCccccccc
Q 017371          118 QTLVGLTSTKEGHLIIC-D---NANGLHKVSEDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDI  192 (372)
Q Consensus       118 ~p~~gl~~d~dG~l~v~-~---~~~gv~~~~~~g-~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~  192 (372)
                      .+. ..++.+||..+.+ .   ....|+....++ ...+.   .+..+.   .-.+|++|.+|+.+..            
T Consensus        25 ~~~-s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~---~g~~l~---~PS~d~~g~~W~v~~~------------   85 (253)
T PF10647_consen   25 DVT-SPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL---TGGSLT---RPSWDPDGWVWTVDDG------------   85 (253)
T ss_pred             ccc-ceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec---cCCccc---cccccCCCCEEEEEcC------------
Confidence            345 7888888864333 2   234466666444 44332   222233   3378899999997652            


Q ss_pred             ccccCCCeEEEEeCCCCeEEEEe---CCcc-CcceEEEecCCCEEEEEeC--CCCeEEEEEccCCCCc------ceeeec
Q 017371          193 LEGKPHGQLLKYDPSSNITTLVA---DGFY-FANGVALSRDEDYVVVCES--WKFRCRKYWLKGERKG------KLETFA  260 (372)
Q Consensus       193 ~~~~~~g~v~~~d~~t~~~~~~~---~~~~-~~~gi~~~~dg~~l~v~~~--~~~~i~~~~~~g~~~~------~~~~~~  260 (372)
                         ....++++ +..+++...+.   ..+. .-..+.+++||..+-+.-.  .+.+|+.--+....-+      ......
T Consensus        86 ---~~~~~~~~-~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~  161 (253)
T PF10647_consen   86 ---SGGVRVVR-DSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVA  161 (253)
T ss_pred             ---CCceEEEE-ecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEec
Confidence               12223333 32223322211   1111 3356889999998777652  2355665443211111      111111


Q ss_pred             cCCCCCCceeEEcCCCCEEEEEec
Q 017371          261 ENLPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       261 ~~~~g~p~~i~~d~~G~lwva~~~  284 (372)
                      .....-...+..-.++.|.|....
T Consensus       162 ~~~~~~v~~v~W~~~~~L~V~~~~  185 (253)
T PF10647_consen  162 PPLLSDVTDVAWSDDSTLVVLGRS  185 (253)
T ss_pred             ccccCcceeeeecCCCEEEEEeCC
Confidence            111122456777788888887765

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=92.78  E-value=2.7  Score=38.29  Aligned_cols=134  Identities=13%  Similarity=0.053  Sum_probs=79.2

Q ss_pred             CCeEEEEeCCCCeEEEEe------CCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCC--CCcceeeeccC---CCCC
Q 017371          198 HGQLLKYDPSSNITTLVA------DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGE--RKGKLETFAEN---LPGA  266 (372)
Q Consensus       198 ~g~v~~~d~~t~~~~~~~------~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~--~~~~~~~~~~~---~~g~  266 (372)
                      ..-|..+|.-||+.+.-.      +.+.....++|++||..||...  +..|..|+...+  .......+..+   ..|.
T Consensus       132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy--krcirvFdt~RpGr~c~vy~t~~~~k~gq~gi  209 (406)
T KOG2919|consen  132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY--KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGI  209 (406)
T ss_pred             cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc--cceEEEeeccCCCCCCcchhhhhcccccccce
Confidence            344666666666655422      2344566899999999887653  456778887422  21111122211   2233


Q ss_pred             CceeEEcCCC--CEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEECCCCcEEEEEECCCCCeec
Q 017371          267 PDNINLAPDG--TFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMS  344 (372)
Q Consensus       267 p~~i~~d~~G--~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~  344 (372)
                      ...+++.+-.  .+=++.+..                                 .-+|++ +.++.+++.+....|.   
T Consensus       210 isc~a~sP~~~~~~a~gsY~q---------------------------------~~giy~-~~~~~pl~llggh~gG---  252 (406)
T KOG2919|consen  210 ISCFAFSPMDSKTLAVGSYGQ---------------------------------RVGIYN-DDGRRPLQLLGGHGGG---  252 (406)
T ss_pred             eeeeeccCCCCcceeeecccc---------------------------------eeeeEe-cCCCCceeeecccCCC---
Confidence            4455555533  455555542                                 123443 3467788887765553   


Q ss_pred             cceeeEE--ECCEEEEEeCCCCeEEEEeC
Q 017371          345 FVTSGLQ--VDNHLYVISLTSNFIGKVQL  371 (372)
Q Consensus       345 ~~t~~~~--~~g~L~igs~~~~~i~~~~~  371 (372)
                       +|....  ++++||.|+...++|-..||
T Consensus       253 -vThL~~~edGn~lfsGaRk~dkIl~WDi  280 (406)
T KOG2919|consen  253 -VTHLQWCEDGNKLFSGARKDDKILCWDI  280 (406)
T ss_pred             -eeeEEeccCcCeecccccCCCeEEEEee
Confidence             555544  57899999999999998886

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=92.73  E-value=2.7  Score=41.98  Aligned_cols=53  Identities=19%  Similarity=0.201  Sum_probs=37.6

Q ss_pred             CeEEcCCCCEEEEeCCCcEEEEc-CCC--cEEEeeecCCcccccccceEEccCCcEEEEeC
Q 017371          122 GLTSTKEGHLIICDNANGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVS  179 (372)
Q Consensus       122 gl~~d~dG~l~v~~~~~gv~~~~-~~g--~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~  179 (372)
                      .+++.|||.-.+...+..++.+| .+|  .+++....     ..++.++...||+.+.+-+
T Consensus        17 d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHK-----DtVycVAys~dGkrFASG~   72 (1081)
T KOG1538|consen   17 DIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHK-----DTVYCVAYAKDGKRFASGS   72 (1081)
T ss_pred             eeEECCCCceEEEecCCEEEEEeCCCccccccccccc-----ceEEEEEEccCCceeccCC
Confidence            89999999755555567899999 666  55543211     2467889999999887644

>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats

Probab=92.68  E-value=0.17  Score=27.21  Aligned_cols=19  Identities=16%  Similarity=0.139  Sum_probs=14.6

Q ss_pred             eccceeeEEE-CCEEEEEeC
Q 017371          343 MSFVTSGLQV-DNHLYVISL  361 (372)
Q Consensus       343 ~~~~t~~~~~-~g~L~igs~  361 (372)
                      .+.+.++.++ +|+||+|+.
T Consensus         4 ~n~I~~i~~D~~G~lWigT~   23 (24)
T PF07494_consen    4 NNNIYSIYEDSDGNLWIGTY   23 (24)
T ss_dssp             SSCEEEEEE-TTSCEEEEET
T ss_pred             CCeEEEEEEcCCcCEEEEeC
Confidence            3467888888 699999986

These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=92.67  E-value=10  Score=36.70  Aligned_cols=83  Identities=13%  Similarity=0.270  Sum_probs=52.6

Q ss_pred             CCCeEEEEeCCCCeEEEE--eCCcc-CcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEc
Q 017371          197 PHGQLLKYDPSSNITTLV--ADGFY-FANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLA  273 (372)
Q Consensus       197 ~~g~v~~~d~~t~~~~~~--~~~~~-~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d  273 (372)
                      ..|.|..+|.. |.-...  ..... -..||+|+|-+..|+++--.+.+|+.|+....+....-.+ + .|  -..+++.
T Consensus       185 d~G~VtlwDv~-g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y-~-~P--lstvaf~  259 (673)
T KOG4378|consen  185 DKGAVTLWDVQ-GMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY-S-HP--LSTVAFS  259 (673)
T ss_pred             cCCeEEEEecc-CCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeee-c-CC--cceeeec
Confidence            45667777754 322111  11122 2469999999888999888888999999864332222222 1 22  3568899


Q ss_pred             CCCCEEEEEec
Q 017371          274 PDGTFWIAIIK  284 (372)
Q Consensus       274 ~~G~lwva~~~  284 (372)
                      ++|.+.++...
T Consensus       260 ~~G~~L~aG~s  270 (673)
T KOG4378|consen  260 ECGTYLCAGNS  270 (673)
T ss_pred             CCceEEEeecC
Confidence            99988887766

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=92.64  E-value=9.7  Score=36.34  Aligned_cols=141  Identities=17%  Similarity=0.059  Sum_probs=74.1

Q ss_pred             ccEEEcCCCcEEEEe-cCCeEEEEe--CCc-eEEEEecCCCcccCeEEc-CCCCEEEEeCCCcEEEEc-CC-C-cEEEee
Q 017371           82 EDASMDKNGVIYTAT-RDGWIKRLQ--DGT-WVNWKFIDSQTLVGLTST-KEGHLIICDNANGLHKVS-ED-G-VENFLS  153 (372)
Q Consensus        82 ~~i~~d~~G~l~v~~-~~g~i~~~~--~g~-~~~~~~~~~~p~~gl~~d-~dG~l~v~~~~~gv~~~~-~~-g-~~~l~~  153 (372)
                      -++|+.+||...+.. .+..|..|+  +.+ +..|..-.+... +++|. ...+||.+..++++..++ .+ . ++.+..
T Consensus       206 l~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~-~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyG  284 (479)
T KOG0299|consen  206 LTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVS-SLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYG  284 (479)
T ss_pred             EEEEEcCCCcEEEecCCCceEEEecCcccchhhccccccccee-eeeeecCccceeeeecCCceEEEehhHhHHHHHHhC
Confidence            358888999655444 555566676  443 334444445556 88886 334799998888887777 22 2 333311


Q ss_pred             ecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeC-CccCcceEEEecCCCE
Q 017371          154 YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-GFYFANGVALSRDEDY  232 (372)
Q Consensus       154 ~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~-~~~~~~gi~~~~dg~~  232 (372)
                      ..     ..+-+|..-..+++. |.              ..-..+-+||++ |+  +.+.+.. +-.++..+++=.+.  
T Consensus       285 Hq-----d~v~~IdaL~reR~v-tV--------------GgrDrT~rlwKi-~e--esqlifrg~~~sidcv~~In~~--  339 (479)
T KOG0299|consen  285 HQ-----DGVLGIDALSRERCV-TV--------------GGRDRTVRLWKI-PE--ESQLIFRGGEGSIDCVAFINDE--  339 (479)
T ss_pred             Cc-----cceeeechhcccceE-Ee--------------ccccceeEEEec-cc--cceeeeeCCCCCeeeEEEeccc--
Confidence            10     112223222333322 11              112245577877 33  2222333 33356677765444  


Q ss_pred             EEEEeCCCCeEEEEEc
Q 017371          233 VVVCESWKFRCRKYWL  248 (372)
Q Consensus       233 l~v~~~~~~~i~~~~~  248 (372)
                      -|++.+.++.|.-+.+
T Consensus       340 HfvsGSdnG~IaLWs~  355 (479)
T KOG0299|consen  340 HFVSGSDNGSIALWSL  355 (479)
T ss_pred             ceeeccCCceEEEeee
Confidence            4555555666766654

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=92.56  E-value=0.66  Score=28.75  Aligned_cols=40  Identities=18%  Similarity=0.350  Sum_probs=29.1

Q ss_pred             CcEEEEeCCCCCCCcccccccccccCCC-eEEEEeCCCCeEEE-EeCCccCcceEEEec
Q 017371          172 GSLYFTVSSSKYLPHEYCLDILEGKPHG-QLLKYDPSSNITTL-VADGFYFANGVALSR  228 (372)
Q Consensus       172 G~i~vtd~~~~~~~~~~~~~~~~~~~~g-~v~~~d~~t~~~~~-~~~~~~~~~gi~~~~  228 (372)
                      |+||.+|.+                 .. .|.+.+.+....++ +..++..|+|+++++
T Consensus         1 ~~iYWtD~~-----------------~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~   42 (42)
T PF00058_consen    1 GKIYWTDWS-----------------QDPSIERANLDGSNRRTVISDDLQHPEGIAVDW   42 (42)
T ss_dssp             TEEEEEETT-----------------TTEEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred             CEEEEEECC-----------------CCcEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence            578999874                 33 78888776555444 557799999999874

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=92.35  E-value=16  Score=38.22  Aligned_cols=123  Identities=12%  Similarity=0.097  Sum_probs=63.7

Q ss_pred             CcEEEEecCCeEEEEe--CCceEE---------EEecCCC-c------ccCeEEcCCCCEEEEeC---------CCc-EE
Q 017371           90 GVIYTATRDGWIKRLQ--DGTWVN---------WKFIDSQ-T------LVGLTSTKEGHLIICDN---------ANG-LH  141 (372)
Q Consensus        90 G~l~v~~~~g~i~~~~--~g~~~~---------~~~~~~~-p------~~gl~~d~dG~l~v~~~---------~~g-v~  141 (372)
                      ++||+++.+|+|+.+|  +|+...         +....+. +      .+.-.+. +|.++++..         ..| |.
T Consensus       261 ~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~-~g~VIvG~~v~d~~~~~~~~G~I~  339 (764)
T TIGR03074       261 RRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVA-GTTVVIGGRVADNYSTDEPSGVIR  339 (764)
T ss_pred             CEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEE-CCEEEEEecccccccccCCCcEEE
Confidence            4899999999999999  676542         1111000 0      1011222 567777642         123 66


Q ss_pred             EEc-CCCcEEEeeec----------CCc-----ccccccceEEccC-CcEEEEeCCCC---CCCcccccccccccCCCeE
Q 017371          142 KVS-EDGVENFLSYV----------NGS-----KLRFANDVVEASD-GSLYFTVSSSK---YLPHEYCLDILEGKPHGQL  201 (372)
Q Consensus       142 ~~~-~~g~~~l~~~~----------~~~-----~~~~~~~l~~d~d-G~i~vtd~~~~---~~~~~~~~~~~~~~~~g~v  201 (372)
                      .+| .+|...+....          ++.     .......+++|++ |.+|+...+..   ++...   ......-.+.|
T Consensus       340 A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r---~~~~n~y~~sl  416 (764)
T TIGR03074       340 AFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDR---TPADEKYSSSL  416 (764)
T ss_pred             EEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCcc---ccCcccccceE
Confidence            688 77722221110          110     0012235677765 57777543211   11100   01123346789


Q ss_pred             EEEeCCCCeEEEEeC
Q 017371          202 LKYDPSSNITTLVAD  216 (372)
Q Consensus       202 ~~~d~~t~~~~~~~~  216 (372)
                      +.+|.+||+.++..+
T Consensus       417 vALD~~TGk~~W~~Q  431 (764)
T TIGR03074       417 VALDATTGKERWVFQ  431 (764)
T ss_pred             EEEeCCCCceEEEec
Confidence            999999999888653

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.85  E-value=7.2  Score=36.45  Aligned_cols=92  Identities=13%  Similarity=0.056  Sum_probs=61.4

Q ss_pred             ccccccCCCeEEEEeCCCCeEEEEeCC--ccCc-ceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCC
Q 017371          191 DILEGKPHGQLLKYDPSSNITTLVADG--FYFA-NGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAP  267 (372)
Q Consensus       191 ~~~~~~~~g~v~~~d~~t~~~~~~~~~--~~~~-~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p  267 (372)
                      .+.+....+.|..||+..+. +.++.-  ...| ..+.+.|+|+++|++++. ..+..||+.+.++..  .+.....|-+
T Consensus       218 ~fat~T~~hqvR~YDt~~qR-RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~-g~l~~FD~r~~kl~g--~~~kg~tGsi  293 (412)
T KOG3881|consen  218 KFATITRYHQVRLYDTRHQR-RPVAQFDFLENPISSTGLTPSGNFIYTGNTK-GQLAKFDLRGGKLLG--CGLKGITGSI  293 (412)
T ss_pred             eEEEEecceeEEEecCcccC-cceeEeccccCcceeeeecCCCcEEEEeccc-chhheecccCceeec--cccCCccCCc
Confidence            34556678899999998543 333321  1112 346688999999999874 569999987654332  2233456678


Q ss_pred             ceeEEcCCCCEEEEEecCc
Q 017371          268 DNINLAPDGTFWIAIIKLD  286 (372)
Q Consensus       268 ~~i~~d~~G~lwva~~~~~  286 (372)
                      ..|..++.+.+..++.-.|
T Consensus       294 rsih~hp~~~~las~GLDR  312 (412)
T KOG3881|consen  294 RSIHCHPTHPVLASCGLDR  312 (412)
T ss_pred             ceEEEcCCCceEEeeccce
Confidence            8999999887777765544

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=91.43  E-value=0.76  Score=28.01  Aligned_cols=42  Identities=14%  Similarity=0.078  Sum_probs=28.2

Q ss_pred             cCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEc
Q 017371          228 RDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLA  273 (372)
Q Consensus       228 ~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d  273 (372)
                      ||+++||+++...+.|..++..+.+  .... .. ....|.+++++
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~--~~~~-i~-vg~~P~~i~~~   42 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNK--VIAT-IP-VGGYPFGVAVS   42 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCe--EEEE-EE-CCCCCceEEeC
Confidence            5788999999999999999875421  1111 11 23458888764

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=91.40  E-value=0.66  Score=33.89  Aligned_cols=47  Identities=11%  Similarity=-0.029  Sum_probs=34.1

Q ss_pred             cCCeEEEEeCCceEEEEecCCCcccCeEEcCCC-CEEEEeCC-CcEEEEc
Q 017371           97 RDGWIKRLQDGTWVNWKFIDSQTLVGLTSTKEG-HLIICDNA-NGLHKVS  144 (372)
Q Consensus        97 ~~g~i~~~~~g~~~~~~~~~~~p~~gl~~d~dG-~l~v~~~~-~gv~~~~  144 (372)
                      .-|.|.-++.++.+........|+ ||++++++ .|||++.. +.|+.+.
T Consensus        34 ~~~~Vvyyd~~~~~~va~g~~~aN-GI~~s~~~k~lyVa~~~~~~I~vy~   82 (86)
T PF01731_consen   34 PWGNVVYYDGKEVKVVASGFSFAN-GIAISPDKKYLYVASSLAHSIHVYK   82 (86)
T ss_pred             CCceEEEEeCCEeEEeeccCCCCc-eEEEcCCCCEEEEEeccCCeEEEEE
Confidence            335677777666777777778899 99999987 58999866 3455554

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=91.30  E-value=14  Score=35.58  Aligned_cols=140  Identities=16%  Similarity=0.179  Sum_probs=84.5

Q ss_pred             CCCccEEEcC-CCcEE-EEecCCeEEEEe-CCc-eEEEEecCCCcccCeEEcCCCCEEEEeCCCcEEEEc-CCCcEEEee
Q 017371           79 NHPEDASMDK-NGVIY-TATRDGWIKRLQ-DGT-WVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDGVENFLS  153 (372)
Q Consensus        79 ~~p~~i~~d~-~G~l~-v~~~~g~i~~~~-~g~-~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~-~~g~~~l~~  153 (372)
                      ...++.++.+ ++.+. .|..||.|.-|| .-. ........+.|...+.+-|.|.+.++..+.-+..+| ..|-+.+..
T Consensus       154 DYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~  233 (487)
T KOG0310|consen  154 DYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTS  233 (487)
T ss_pred             ceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhh
Confidence            3455666665 44454 455899999998 211 223334556777577788999998887777788888 545222211


Q ss_pred             ecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcc---eEEEecCC
Q 017371          154 YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFAN---GVALSRDE  230 (372)
Q Consensus       154 ~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~---gi~~~~dg  230 (372)
                      ..  .-...+..+.+..+++-.++                 +.-++.|-.||.  ...+++ ..+.+|.   .++++||+
T Consensus       234 ~~--~H~KtVTcL~l~s~~~rLlS-----------------~sLD~~VKVfd~--t~~Kvv-~s~~~~~pvLsiavs~dd  291 (487)
T KOG0310|consen  234 MF--NHNKTVTCLRLASDSTRLLS-----------------GSLDRHVKVFDT--TNYKVV-HSWKYPGPVLSIAVSPDD  291 (487)
T ss_pred             hh--cccceEEEEEeecCCceEee-----------------cccccceEEEEc--cceEEE-EeeecccceeeEEecCCC
Confidence            11  11234556777777765554                 224667777874  344433 2444555   46799998


Q ss_pred             CEEEEEeCCC
Q 017371          231 DYVVVCESWK  240 (372)
Q Consensus       231 ~~l~v~~~~~  240 (372)
                      ..+++.-+++
T Consensus       292 ~t~viGmsnG  301 (487)
T KOG0310|consen  292 QTVVIGMSNG  301 (487)
T ss_pred             ceEEEecccc
Confidence            8777776543

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=90.98  E-value=12  Score=33.97  Aligned_cols=170  Identities=14%  Similarity=0.097  Sum_probs=88.9

Q ss_pred             CCCcEEEEecCCeEEEEe-C--CceEEE--EecCCCcccCeEEcCCCC-EEEEeCCCcEEEEc-CCC-cEEEeeecCCcc
Q 017371           88 KNGVIYTATRDGWIKRLQ-D--GTWVNW--KFIDSQTLVGLTSTKEGH-LIICDNANGLHKVS-EDG-VENFLSYVNGSK  159 (372)
Q Consensus        88 ~~G~l~v~~~~g~i~~~~-~--g~~~~~--~~~~~~p~~gl~~d~dG~-l~v~~~~~gv~~~~-~~g-~~~l~~~~~~~~  159 (372)
                      ++...|+++.+..+..+| .  .+.+..  ....+..+ +..+.  |+ +||++...|++.+| .+- ..+++.......
T Consensus        95 se~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyay-gv~vs--Gn~aYVadlddgfLivdvsdpssP~lagrya~~~  171 (370)
T COG5276          95 SEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAY-GVYVS--GNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPG  171 (370)
T ss_pred             cccEEEEEcCCCceEEEeccCCCCcceeccccCCceEE-EEEec--CCEEEEeeccCcEEEEECCCCCCceeeeeeccCC
Confidence            356899999777788888 2  222222  22224444 55554  54 89999888999999 544 444444322211


Q ss_pred             cccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCc-c--CcceEEEecCCCEEEEE
Q 017371          160 LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF-Y--FANGVALSRDEDYVVVC  236 (372)
Q Consensus       160 ~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~-~--~~~gi~~~~dg~~l~v~  236 (372)
                       ....++++ +...-|+++                  .+++|..+|-..-.--++.... .  ...++.++  .++.|++
T Consensus       172 -~d~~~v~I-SGn~AYvA~------------------~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vs--dnr~y~v  229 (370)
T COG5276         172 -GDTHDVAI-SGNYAYVAW------------------RDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVS--DNRAYLV  229 (370)
T ss_pred             -CCceeEEE-ecCeEEEEE------------------eCCCeEEEEccCCCCCeEEEEEecCCceEEEEec--CCeeEEE
Confidence             11235555 334567754                  3456777765422111111111 1  22334444  3456666


Q ss_pred             eCCCCeEEEEEccCCCCcceeeeccCCCCCCcee--EEcCCCCEEEEEecC
Q 017371          237 ESWKFRCRKYWLKGERKGKLETFAENLPGAPDNI--NLAPDGTFWIAIIKL  285 (372)
Q Consensus       237 ~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i--~~d~~G~lwva~~~~  285 (372)
                      .- +..+..++.++++..  ..+..-.+..|.++  ..=++...|++....
T Consensus       230 vy-~egvlivd~s~~ssp--~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~  277 (370)
T COG5276         230 VY-DEGVLIVDVSGPSSP--TVFGSYETSNPVSISTVPVSGEYAYVADGAK  277 (370)
T ss_pred             Ec-ccceEEEecCCCCCc--eEeeccccCCcccccceecccceeeeecccc
Confidence            64 345888888776422  23322233334444  222445688888763

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=90.85  E-value=11  Score=33.52  Aligned_cols=179  Identities=9%  Similarity=0.041  Sum_probs=95.0

Q ss_pred             EEEcCCCcEEEEe-cCCeEEEEe--CCc-eEEEEecCCCcccCeEEcCCCCEEEEeC-CCcEEEEc-CCC--cEEEeeec
Q 017371           84 ASMDKNGVIYTAT-RDGWIKRLQ--DGT-WVNWKFIDSQTLVGLTSTKEGHLIICDN-ANGLHKVS-EDG--VENFLSYV  155 (372)
Q Consensus        84 i~~d~~G~l~v~~-~~g~i~~~~--~g~-~~~~~~~~~~p~~gl~~d~dG~l~v~~~-~~gv~~~~-~~g--~~~l~~~~  155 (372)
                      |-...+|.|.++. .|.....|-  +|+ +-++.--.|-.+ .+.+|.+-...++.+ ++.+..+| ++|  +..+... 
T Consensus        16 iKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW-~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~-   93 (327)
T KOG0643|consen   16 IKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVW-CCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTN-   93 (327)
T ss_pred             EEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEE-EEEecCCcceeeeccccceeEEEEcCCCcEEEEeecC-
Confidence            5566677777665 344333332  443 222322233344 566665555555433 34567777 777  3323221 


Q ss_pred             CCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCC-------CCe-EEEEeCCccCcceEEEe
Q 017371          156 NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS-------SNI-TTLVADGFYFANGVALS  227 (372)
Q Consensus       156 ~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~-------t~~-~~~~~~~~~~~~gi~~~  227 (372)
                           ..+..+.++.+|++.+.-....            ....+.|..+|..       ..+ +..+...-..++...|+
T Consensus        94 -----~~Vk~~~F~~~gn~~l~~tD~~------------mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg  156 (327)
T KOG0643|consen   94 -----SPVKRVDFSFGGNLILASTDKQ------------MGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWG  156 (327)
T ss_pred             -----CeeEEEeeccCCcEEEEEehhh------------cCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeec
Confidence                 1345678888887555322100            1123344444432       122 33333444556677789


Q ss_pred             cCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 017371          228 RDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       228 ~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~  284 (372)
                      +-+++++.. -.++.|.+|+...++.- .+.. +......++|...+|..++|....
T Consensus       157 ~l~~~ii~G-he~G~is~~da~~g~~~-v~s~-~~h~~~Ind~q~s~d~T~FiT~s~  210 (327)
T KOG0643|consen  157 PLGETIIAG-HEDGSISIYDARTGKEL-VDSD-EEHSSKINDLQFSRDRTYFITGSK  210 (327)
T ss_pred             ccCCEEEEe-cCCCcEEEEEcccCcee-eech-hhhccccccccccCCcceEEeccc
Confidence            988855544 45678999998653111 1111 111224678999999999998765

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=90.47  E-value=13  Score=33.65  Aligned_cols=143  Identities=12%  Similarity=0.153  Sum_probs=81.5

Q ss_pred             ccEEEcC-CCcEEEEecCCeEEEEe-CCceEEEEecCCCcccCeEEcCCCCEEEEeCCCcEEEEc-CCC-cEEEeeecCC
Q 017371           82 EDASMDK-NGVIYTATRDGWIKRLQ-DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENFLSYVNG  157 (372)
Q Consensus        82 ~~i~~d~-~G~l~v~~~~g~i~~~~-~g~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~-~~g-~~~l~~~~~~  157 (372)
                      .++-+++ .+.|.+++++|.+..++ ...-.......+.|++..+|.++-.+|+++.+.-|.++| ..+ ...+..... 
T Consensus        17 S~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~igth~~-   95 (323)
T KOG1036|consen   17 SSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIGTHDE-   95 (323)
T ss_pred             eeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCCcceeeccCCC-
Confidence            3455664 45888999999998888 322111122345676688888788899998877788899 555 443322211 


Q ss_pred             cccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceE-EEecCCCEEEEE
Q 017371          158 SKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGV-ALSRDEDYVVVC  236 (372)
Q Consensus       158 ~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi-~~~~dg~~l~v~  236 (372)
                          .+..|.....-...++                 +..+.+|-.+|+...   .....+..++-| +.+--++.|+|.
T Consensus        96 ----~i~ci~~~~~~~~vIs-----------------gsWD~~ik~wD~R~~---~~~~~~d~~kkVy~~~v~g~~LvVg  151 (323)
T KOG1036|consen   96 ----GIRCIEYSYEVGCVIS-----------------GSWDKTIKFWDPRNK---VVVGTFDQGKKVYCMDVSGNRLVVG  151 (323)
T ss_pred             ----ceEEEEeeccCCeEEE-----------------cccCccEEEEecccc---ccccccccCceEEEEeccCCEEEEe
Confidence                1222333222223333                 335667777887531   112222233332 345556656664


Q ss_pred             eCCCCeEEEEEccC
Q 017371          237 ESWKFRCRKYWLKG  250 (372)
Q Consensus       237 ~~~~~~i~~~~~~g  250 (372)
                       +.+.++..|++..
T Consensus       152 -~~~r~v~iyDLRn  164 (323)
T KOG1036|consen  152 -TSDRKVLIYDLRN  164 (323)
T ss_pred             -ecCceEEEEEccc
Confidence             3466788898864

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=90.46  E-value=26  Score=37.03  Aligned_cols=102  Identities=21%  Similarity=0.203  Sum_probs=61.4

Q ss_pred             cccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCC-ccCcceEEEecCCCEEEEEeCCC
Q 017371          162 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSRDEDYVVVCESWK  240 (372)
Q Consensus       162 ~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~-~~~~~gi~~~~dg~~l~v~~~~~  240 (372)
                      .+.++..+|++.+.++-+                 -++.|..+|..+.+...+..+ ....-|+.|||-|++  ++...+
T Consensus       131 DV~Dv~Wsp~~~~lvS~s-----------------~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky--~ASqsd  191 (942)
T KOG0973|consen  131 DVLDVNWSPDDSLLVSVS-----------------LDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKY--FASQSD  191 (942)
T ss_pred             ccceeccCCCccEEEEec-----------------ccceEEEEccccceeeeeeecccccccceEECCccCe--eeeecC
Confidence            455788889998888744                 467899999876654444433 456779999999973  344445


Q ss_pred             CeEEEEEccCCCCcce----eeeccCCCC--CCceeEEcCCCCEEEEEec
Q 017371          241 FRCRKYWLKGERKGKL----ETFAENLPG--APDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       241 ~~i~~~~~~g~~~~~~----~~~~~~~~g--~p~~i~~d~~G~lwva~~~  284 (372)
                      +|..+||--.. .+-.    +.|. .-++  +-.-+...|||.+.++..+
T Consensus       192 Drtikvwrt~d-w~i~k~It~pf~-~~~~~T~f~RlSWSPDG~~las~nA  239 (942)
T KOG0973|consen  192 DRTLKVWRTSD-WGIEKSITKPFE-ESPLTTFFLRLSWSPDGHHLASPNA  239 (942)
T ss_pred             CceEEEEEccc-ceeeEeeccchh-hCCCcceeeecccCCCcCeecchhh
Confidence            56666654221 1111    1221 1122  2223456899988887765

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=90.29  E-value=10  Score=34.91  Aligned_cols=121  Identities=16%  Similarity=0.205  Sum_probs=66.4

Q ss_pred             CeEEcCCCCEEEEeCC-CcEEEEc-CCC-cEEEeeec-------CCcccccccceEEc----cCCcEEEEeCCCCCCCcc
Q 017371          122 GLTSTKEGHLIICDNA-NGLHKVS-EDG-VENFLSYV-------NGSKLRFANDVVEA----SDGSLYFTVSSSKYLPHE  187 (372)
Q Consensus       122 gl~~d~dG~l~v~~~~-~gv~~~~-~~g-~~~l~~~~-------~~~~~~~~~~l~~d----~dG~i~vtd~~~~~~~~~  187 (372)
                      ++..+++|+++|+.-. ..|++++ .+| +.......       +...+..-++..+-    .+++|-+-|-..      
T Consensus       148 sV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~~------  221 (299)
T PF14269_consen  148 SVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNAN------  221 (299)
T ss_pred             eeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCCC------
Confidence            7778889998887543 5799999 777 43332211       11123344445554    566666654310      


Q ss_pred             cccccccccCCCeEEEEeCCCCeEEEEeCCccCcce--------EEEecCCCEEEEEeCCCCeEEEEEccC
Q 017371          188 YCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANG--------VALSRDEDYVVVCESWKFRCRKYWLKG  250 (372)
Q Consensus       188 ~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~g--------i~~~~dg~~l~v~~~~~~~i~~~~~~g  250 (372)
                      ... .......++++.+|+.+.+++.+..-...+.+        +..-|.|+ ++++.....++.-|+.+|
T Consensus       222 ~~~-~~~~~s~~~v~~ld~~~~~~~~~~~~~~~~~~~~s~~~G~~Q~L~nGn-~li~~g~~g~~~E~~~~G  290 (299)
T PF14269_consen  222 SDF-NGTEPSRGLVLELDPETMTVTLVREYSDHPDGFYSPSQGSAQRLPNGN-VLIGWGNNGRISEFTPDG  290 (299)
T ss_pred             CCC-CCCcCCCceEEEEECCCCEEEEEEEeecCCCcccccCCCcceECCCCC-EEEecCCCceEEEECCCC
Confidence            000 12234578899999987666554322212221        33445555 666666666666666555

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=90.24  E-value=15  Score=34.05  Aligned_cols=148  Identities=11%  Similarity=0.107  Sum_probs=84.0

Q ss_pred             CCCCCCccEEEcCCC-cEEEEecCCeEEEEe--CCce-EEEEecCCCcccCeEEcCCCCEEEEeCCC-cEEEEc-CCC--
Q 017371           76 GSVNHPEDASMDKNG-VIYTATRDGWIKRLQ--DGTW-VNWKFIDSQTLVGLTSTKEGHLIICDNAN-GLHKVS-EDG--  147 (372)
Q Consensus        76 g~~~~p~~i~~d~~G-~l~v~~~~g~i~~~~--~g~~-~~~~~~~~~p~~gl~~d~dG~l~v~~~~~-gv~~~~-~~g--  147 (372)
                      |.+...+++++.+.. +|+.+..++.|.+||  .+++ +.+..-....+ +|.+.|.-++.++.... -+..+| ...  
T Consensus       191 Ghi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~-~L~lhPTldvl~t~grDst~RvWDiRtr~~  269 (460)
T KOG0285|consen  191 GHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVY-CLDLHPTLDVLVTGGRDSTIRVWDIRTRAS  269 (460)
T ss_pred             chhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeE-EEeccccceeEEecCCcceEEEeeecccce
Confidence            445567788888543 666666889999999  4443 33322233455 77777777766665443 344555 443  


Q ss_pred             cEEEeeecCCcccccccceEEcc-CCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCc-cCcceEE
Q 017371          148 VENFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF-YFANGVA  225 (372)
Q Consensus       148 ~~~l~~~~~~~~~~~~~~l~~d~-dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~-~~~~gi~  225 (372)
                      +..+.    |-. ..+..+.+.+ |+.|+-+.                  -++.|..+|...|+.-...... .....++
T Consensus       270 V~~l~----GH~-~~V~~V~~~~~dpqvit~S------------------~D~tvrlWDl~agkt~~tlt~hkksvral~  326 (460)
T KOG0285|consen  270 VHVLS----GHT-NPVASVMCQPTDPQVITGS------------------HDSTVRLWDLRAGKTMITLTHHKKSVRALC  326 (460)
T ss_pred             EEEec----CCC-CcceeEEeecCCCceEEec------------------CCceEEEeeeccCceeEeeecccceeeEEe
Confidence            44432    211 1233444433 66776542                  3556777787666654443332 2345678


Q ss_pred             EecCCCEEEEEeCCCCeEEEEEcc
Q 017371          226 LSRDEDYVVVCESWKFRCRKYWLK  249 (372)
Q Consensus       226 ~~~dg~~l~v~~~~~~~i~~~~~~  249 (372)
                      ++|+.. ++.+.+ .+.|..+.+.
T Consensus       327 lhP~e~-~fASas-~dnik~w~~p  348 (460)
T KOG0285|consen  327 LHPKEN-LFASAS-PDNIKQWKLP  348 (460)
T ss_pred             cCCchh-hhhccC-CccceeccCC
Confidence            888875 555544 4457666654

>PHA02790 Kelch-like protein; Provisional

Probab=90.23  E-value=9.6  Score=37.63  Aligned_cols=120  Identities=15%  Similarity=0.136  Sum_probs=61.3

Q ss_pred             CCcEEEEec---CCeEEEEe--CCceEEEEecCCCccc--CeEEcCCCCEEEEeCCC----cEEEEc-CCC-cEEEeeec
Q 017371           89 NGVIYTATR---DGWIKRLQ--DGTWVNWKFIDSQTLV--GLTSTKEGHLIICDNAN----GLHKVS-EDG-VENFLSYV  155 (372)
Q Consensus        89 ~G~l~v~~~---~g~i~~~~--~g~~~~~~~~~~~p~~--gl~~d~dG~l~v~~~~~----gv~~~~-~~g-~~~l~~~~  155 (372)
                      +|.||+...   ...+.+++  .++|....+. ..+..  +.+. -+|.|||.....    .+.++| .++ .+..+.. 
T Consensus       318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l-~~~r~~~~~~~-~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m-  394 (480)
T PHA02790        318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL-LKPRCNPAVAS-INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPST-  394 (480)
T ss_pred             CCEEEEECCcCCCCceEEEECCCCeEEECCCC-CCCCcccEEEE-ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCC-
Confidence            567776542   13466676  4555544321 11211  2222 378999975422    255667 333 4433221 


Q ss_pred             CCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCc---ceEEEecCCCE
Q 017371          156 NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA---NGVALSRDEDY  232 (372)
Q Consensus       156 ~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~---~gi~~~~dg~~  232 (372)
                      +-.   ....-+..-+|+||+.                    .|.+-+||+++++++.+.. +..|   .+++.- ++ .
T Consensus       395 ~~~---r~~~~~~~~~~~IYv~--------------------GG~~e~ydp~~~~W~~~~~-m~~~r~~~~~~v~-~~-~  448 (480)
T PHA02790        395 YYP---HYKSCALVFGRRLFLV--------------------GRNAEFYCESSNTWTLIDD-PIYPRDNPELIIV-DN-K  448 (480)
T ss_pred             CCc---cccceEEEECCEEEEE--------------------CCceEEecCCCCcEeEcCC-CCCCccccEEEEE-CC-E
Confidence            111   1112233457899994                    2457789999998887643 2222   234433 34 4


Q ss_pred             EEEEe
Q 017371          233 VVVCE  237 (372)
Q Consensus       233 l~v~~  237 (372)
                      +|+..
T Consensus       449 IYviG  453 (480)
T PHA02790        449 LLLIG  453 (480)
T ss_pred             EEEEC
Confidence            88765

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=90.20  E-value=23  Score=35.88  Aligned_cols=134  Identities=16%  Similarity=0.138  Sum_probs=70.1

Q ss_pred             EEEEe--CCceEEEEe-cCCCcccCeEEcCCCCEEEEeCCC-c------EEEEcC-CC-cEEEeeecCCcccccccceEE
Q 017371          101 IKRLQ--DGTWVNWKF-IDSQTLVGLTSTKEGHLIICDNAN-G------LHKVSE-DG-VENFLSYVNGSKLRFANDVVE  168 (372)
Q Consensus       101 i~~~~--~g~~~~~~~-~~~~p~~gl~~d~dG~l~v~~~~~-g------v~~~~~-~g-~~~l~~~~~~~~~~~~~~l~~  168 (372)
                      +..+|  .+++..... +..+...++++- +|.||++.... |      +.++|+ .+ ...++....   .+.-.++++
T Consensus       303 ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~---~R~~~~v~~  378 (571)
T KOG4441|consen  303 VECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNT---KRSDFGVAV  378 (571)
T ss_pred             eEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccC---ccccceeEE
Confidence            44555  444444332 112222266665 57899986544 3      556663 33 333322111   112223333


Q ss_pred             ccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCCC------Ce
Q 017371          169 ASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK------FR  242 (372)
Q Consensus       169 d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~------~~  242 (372)
                       =+|.||+.-..            .....-..+-+|||.+.+++.+..-...-.+.+...-++.+|+..-..      ..
T Consensus       379 -l~g~iYavGG~------------dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~s  445 (571)
T KOG4441|consen  379 -LDGKLYAVGGF------------DGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNS  445 (571)
T ss_pred             -ECCEEEEEecc------------ccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccce
Confidence             47889885221            011123468899999999888765444333444333345699876411      46


Q ss_pred             EEEEEccCC
Q 017371          243 CRKYWLKGE  251 (372)
Q Consensus       243 i~~~~~~g~  251 (372)
                      +.+|++.+.
T Consensus       446 ve~YDP~t~  454 (571)
T KOG4441|consen  446 VECYDPETN  454 (571)
T ss_pred             EEEEcCCCC
Confidence            788887654

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=90.19  E-value=18  Score=36.01  Aligned_cols=69  Identities=16%  Similarity=0.177  Sum_probs=42.1

Q ss_pred             EEeCCccCcceEEEecCCCEEEEEe--CCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCC-CEEEEEec
Q 017371          213 LVADGFYFANGVALSRDEDYVVVCE--SWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDG-TFWIAIIK  284 (372)
Q Consensus       213 ~~~~~~~~~~gi~~~~dg~~l~v~~--~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G-~lwva~~~  284 (372)
                      .+......-+.+.|+.+|++|-+..  .++.+|+.+.+.-.+  ....|. ...|.+-...+-+.- .++|++..
T Consensus       516 ~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~--sQ~PF~-kskG~vq~v~FHPs~p~lfVaTq~  587 (733)
T KOG0650|consen  516 IVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRK--SQSPFR-KSKGLVQRVKFHPSKPYLFVATQR  587 (733)
T ss_pred             EEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccccc--ccCchh-hcCCceeEEEecCCCceEEEEecc
Confidence            3444455567789999999877643  344678888775321  112332 233556666676655 68888765

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=90.15  E-value=17  Score=35.73  Aligned_cols=111  Identities=10%  Similarity=0.110  Sum_probs=68.3

Q ss_pred             EEEEecCCeEEEEe--CCceEEEEecCCCcccCeEEc----CCCCEEEEeCCCcEEEEc-CCC--cEEEeeecCCccccc
Q 017371           92 IYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTST----KEGHLIICDNANGLHKVS-EDG--VENFLSYVNGSKLRF  162 (372)
Q Consensus        92 l~v~~~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d----~dG~l~v~~~~~gv~~~~-~~g--~~~l~~~~~~~~~~~  162 (372)
                      +..|+..|.|+-++  .|++......++.+- .+...    .-|-||-++....+..++ .++  +..+.   .+.  ..
T Consensus        73 lvlgt~~g~v~~ys~~~g~it~~~st~~h~~-~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~---~~~--~~  146 (541)
T KOG4547|consen   73 LVLGTPQGSVLLYSVAGGEITAKLSTDKHYG-NVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWK---EQK--PL  146 (541)
T ss_pred             EEeecCCccEEEEEecCCeEEEEEecCCCCC-cceeeecccccCceEecCCceeEEEEecccceeeeeec---cCC--Cc
Confidence            45566778788777  677666555444332 22222    234566665555566676 444  22221   121  24


Q ss_pred             ccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcc-eEEEe
Q 017371          163 ANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFAN-GVALS  227 (372)
Q Consensus       163 ~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~-gi~~~  227 (372)
                      +..+.+.+||.+..+                   ..+.|-.+|.+++++-..+++...|. .+.|.
T Consensus       147 ~~sl~is~D~~~l~~-------------------as~~ik~~~~~~kevv~~ftgh~s~v~t~~f~  193 (541)
T KOG4547|consen  147 VSSLCISPDGKILLT-------------------ASRQIKVLDIETKEVVITFTGHGSPVRTLSFT  193 (541)
T ss_pred             cceEEEcCCCCEEEe-------------------ccceEEEEEccCceEEEEecCCCcceEEEEEE
Confidence            568899999998876                   45678889998898888888877664 34443

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=90.10  E-value=18  Score=34.72  Aligned_cols=140  Identities=11%  Similarity=0.102  Sum_probs=73.3

Q ss_pred             CCccEEEcCCCcEEE-EecCCeEEEEe-CCc-eEEEEecCCCcccCeEEcCCCCEEEE-eCCCcEEEEc-CCC-cEEEee
Q 017371           80 HPEDASMDKNGVIYT-ATRDGWIKRLQ-DGT-WVNWKFIDSQTLVGLTSTKEGHLIIC-DNANGLHKVS-EDG-VENFLS  153 (372)
Q Consensus        80 ~p~~i~~d~~G~l~v-~~~~g~i~~~~-~g~-~~~~~~~~~~p~~gl~~d~dG~l~v~-~~~~gv~~~~-~~g-~~~l~~  153 (372)
                      +..+++...+|.+.+ |..+|.+.-|+ +|. ...+..-- .|+..|....+|+..++ +.+.....+| ..| ..+...
T Consensus       237 dVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~Hk-gPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~  315 (524)
T KOG0273|consen  237 DVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHK-GPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFE  315 (524)
T ss_pred             CcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhccC-CceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeee
Confidence            566788888896654 55788777777 664 33333322 34338888888874444 3334567777 667 443322


Q ss_pred             ecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCe--EEEEeCCCCeEEEEeCCccCcceEEEecCCC
Q 017371          154 YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQ--LLKYDPSSNITTLVADGFYFANGVALSRDED  231 (372)
Q Consensus       154 ~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~--v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~  231 (372)
                      .      +...++.++     |+++..           +......+.  ||+++.++ -+..+...-..-+++.++|.|.
T Consensus       316 ~------~s~~~lDVd-----W~~~~~-----------F~ts~td~~i~V~kv~~~~-P~~t~~GH~g~V~alk~n~tg~  372 (524)
T KOG0273|consen  316 F------HSAPALDVD-----WQSNDE-----------FATSSTDGCIHVCKVGEDR-PVKTFIGHHGEVNALKWNPTGS  372 (524)
T ss_pred             e------ccCCccceE-----EecCce-----------EeecCCCceEEEEEecCCC-cceeeecccCceEEEEECCCCc
Confidence            1      111133332     333221           011123444  45555442 2222222334457888999887


Q ss_pred             EEEEEeCCCCeEE
Q 017371          232 YVVVCESWKFRCR  244 (372)
Q Consensus       232 ~l~v~~~~~~~i~  244 (372)
                       |+.+-+.+..+.
T Consensus       373 -LLaS~SdD~Tlk  384 (524)
T KOG0273|consen  373 -LLASCSDDGTLK  384 (524)
T ss_pred             -eEEEecCCCeeE
Confidence             555555444343

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=89.94  E-value=15  Score=33.39  Aligned_cols=100  Identities=19%  Similarity=0.184  Sum_probs=57.0

Q ss_pred             CCCEEEEeCCCcEEEEc-CCC--cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEE
Q 017371          128 EGHLIICDNANGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKY  204 (372)
Q Consensus       128 dG~l~v~~~~~gv~~~~-~~g--~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~  204 (372)
                      ....|+++...|++.+| .+-  .+.+ ...+..  ....++.+ .....|++|-                  +.+++.+
T Consensus        96 e~yvyvad~ssGL~IvDIS~P~sP~~~-~~lnt~--gyaygv~v-sGn~aYVadl------------------ddgfLiv  153 (370)
T COG5276          96 EEYVYVADWSSGLRIVDISTPDSPTLI-GFLNTD--GYAYGVYV-SGNYAYVADL------------------DDGFLIV  153 (370)
T ss_pred             ccEEEEEcCCCceEEEeccCCCCccee-ccccCC--ceEEEEEe-cCCEEEEeec------------------cCcEEEE
Confidence            56789999889999999 332  2221 111110  23334444 2345788763                  3457777


Q ss_pred             eCCCCeEEEEeCCccCcc----eEEEecCCCEEEEEeCCCCeEEEEEccCCC
Q 017371          205 DPSSNITTLVADGFYFAN----GVALSRDEDYVVVCESWKFRCRKYWLKGER  252 (372)
Q Consensus       205 d~~t~~~~~~~~~~~~~~----gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~  252 (372)
                      |..+-+--+++.....+.    -++++  |++-|++.. +..+..+++..+.
T Consensus       154 dvsdpssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~-d~GL~ivDVSnp~  202 (370)
T COG5276         154 DVSDPSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWR-DGGLTIVDVSNPH  202 (370)
T ss_pred             ECCCCCCceeeeeeccCCCCceeEEEe--cCeEEEEEe-CCCeEEEEccCCC
Confidence            765443333333333333    35555  778998875 4568888887653

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=89.90  E-value=24  Score=35.67  Aligned_cols=56  Identities=14%  Similarity=0.152  Sum_probs=35.3

Q ss_pred             CCccEEEcCCCcEEEEecCCeEEEEe--CCc-eEEEEecCCCcccCeEEcCCCCEEEEeC
Q 017371           80 HPEDASMDKNGVIYTATRDGWIKRLQ--DGT-WVNWKFIDSQTLVGLTSTKEGHLIICDN  136 (372)
Q Consensus        80 ~p~~i~~d~~G~l~v~~~~g~i~~~~--~g~-~~~~~~~~~~p~~gl~~d~dG~l~v~~~  136 (372)
                      --..+++-|||.=.+-..+.+++.+|  +|. ..+...--...+ .++...||..+.+..
T Consensus        14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVy-cVAys~dGkrFASG~   72 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVY-CVAYAKDGKRFASGS   72 (1081)
T ss_pred             chheeEECCCCceEEEecCCEEEEEeCCCcccccccccccceEE-EEEEccCCceeccCC
Confidence            45678999999544444577899999  554 333222222345 778888888776643

>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]

Probab=88.81  E-value=16  Score=32.37  Aligned_cols=51  Identities=24%  Similarity=0.440  Sum_probs=31.6

Q ss_pred             EEEEecCCeEEEEe-----CCc-----eEEEEecCCCcccCeEEc-CCCCEEEEeCCCcEEEEc
Q 017371           92 IYTATRDGWIKRLQ-----DGT-----WVNWKFIDSQTLVGLTST-KEGHLIICDNANGLHKVS  144 (372)
Q Consensus        92 l~v~~~~g~i~~~~-----~g~-----~~~~~~~~~~p~~gl~~d-~dG~l~v~~~~~gv~~~~  144 (372)
                      +++...+|.|-++.     +|+     ++.+..+ ...- |+..| ..|.||++...-+++++.
T Consensus       171 vfV~~~qG~~~Qy~l~d~gnGkv~~k~vR~fk~~-tQTE-G~VaDdEtG~LYIaeEdvaiWK~~  232 (364)
T COG4247         171 VFVNRRQGDIAQYKLIDQGNGKVGTKLVRQFKIP-TQTE-GMVADDETGFLYIAEEDVAIWKYE  232 (364)
T ss_pred             EEEecCCCceeEEEEEecCCceEcceeeEeeecC-Cccc-ceeeccccceEEEeeccceeeecc
Confidence            33444667776654     333     2333221 2334 77776 568999999888899998

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=88.66  E-value=22  Score=35.24  Aligned_cols=114  Identities=19%  Similarity=0.264  Sum_probs=64.4

Q ss_pred             EEEc-CCCcEEEEecCCeEEEEe--CCce-EEEEecCCCcccCeEEcCCCCEEEEeCCCcE-EEEc-CCC--cEEEe--e
Q 017371           84 ASMD-KNGVIYTATRDGWIKRLQ--DGTW-VNWKFIDSQTLVGLTSTKEGHLIICDNANGL-HKVS-EDG--VENFL--S  153 (372)
Q Consensus        84 i~~d-~~G~l~v~~~~g~i~~~~--~g~~-~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv-~~~~-~~g--~~~l~--~  153 (372)
                      |..+ +.-.||++.....|||++  .|.+ ..+....+..+ .+.+.+-..|+.+....|. -.+| .+.  ...+-  .
T Consensus       139 m~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN-~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~  217 (703)
T KOG2321|consen  139 MKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELN-VVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAAS  217 (703)
T ss_pred             ccccCCCccEEEeecCcceEEEEccccccccccccccccce-eeeecCccceEEecccCceEEEecchhhhhheeeeccc
Confidence            4444 344688887677799998  6654 23333334444 6666666666666554454 4455 332  22221  1


Q ss_pred             e----cCCcccccccceEEccCC-cEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeC
Q 017371          154 Y----VNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD  216 (372)
Q Consensus       154 ~----~~~~~~~~~~~l~~d~dG-~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~  216 (372)
                      .    ..+.....+..+.+..+| ++-|                  +...|.++.||..+.+...+.+
T Consensus       218 ~v~s~pg~~~~~svTal~F~d~gL~~aV------------------Gts~G~v~iyDLRa~~pl~~kd  267 (703)
T KOG2321|consen  218 SVNSHPGGDAAPSVTALKFRDDGLHVAV------------------GTSTGSVLIYDLRASKPLLVKD  267 (703)
T ss_pred             ccCCCccccccCcceEEEecCCceeEEe------------------eccCCcEEEEEcccCCceeecc
Confidence            1    112233456677777666 4444                  3467899999998766555443

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=88.64  E-value=21  Score=33.39  Aligned_cols=153  Identities=12%  Similarity=0.150  Sum_probs=99.0

Q ss_pred             CCCCCCccEEEcCCCcEEEEe-cCCeEEEEe-CC----ceEEEE----------------------ecCCCcccCeEEcC
Q 017371           76 GSVNHPEDASMDKNGVIYTAT-RDGWIKRLQ-DG----TWVNWK----------------------FIDSQTLVGLTSTK  127 (372)
Q Consensus        76 g~~~~p~~i~~d~~G~l~v~~-~~g~i~~~~-~g----~~~~~~----------------------~~~~~p~~gl~~d~  127 (372)
                      |.-...+++.++++|..+++. .|..|..++ ..    +.+...                      ...-.|...+.+.+
T Consensus       191 GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d  270 (423)
T KOG0313|consen  191 GHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD  270 (423)
T ss_pred             ccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC
Confidence            544568889999999777765 677776665 11    111100                      01112343677777


Q ss_pred             CCCEEEEeCCCcEEEEc-CCC--cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEE
Q 017371          128 EGHLIICDNANGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKY  204 (372)
Q Consensus       128 dG~l~v~~~~~gv~~~~-~~g--~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~  204 (372)
                      .+.+|-+..++-|.++| ..|  ...+...      ...+.+...+.-++.++-+                 ....+..+
T Consensus       271 ~~v~yS~SwDHTIk~WDletg~~~~~~~~~------ksl~~i~~~~~~~Ll~~gs-----------------sdr~irl~  327 (423)
T KOG0313|consen  271 ATVIYSVSWDHTIKVWDLETGGLKSTLTTN------KSLNCISYSPLSKLLASGS-----------------SDRHIRLW  327 (423)
T ss_pred             CCceEeecccceEEEEEeecccceeeeecC------cceeEeecccccceeeecC-----------------CCCceeec
Confidence            78899888888899999 655  3333221      2456777778778887643                 34456778


Q ss_pred             eCCCCeEEEEeC----CccCcceEEEecCCCEEEEEeCCCCeEEEEEccCC
Q 017371          205 DPSSNITTLVAD----GFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGE  251 (372)
Q Consensus       205 d~~t~~~~~~~~----~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~  251 (372)
                      ||.++.-..+..    .-..-.++.++|...+.+++.+.++.+..+|....
T Consensus       328 DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~  378 (423)
T KOG0313|consen  328 DPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRST  378 (423)
T ss_pred             CCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccC
Confidence            987764443322    22345678899999999999998888888877543

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=88.44  E-value=24  Score=34.65  Aligned_cols=116  Identities=16%  Similarity=0.222  Sum_probs=63.8

Q ss_pred             eEEEEe-CCceEEEEecCCCcccCeEEcCCCCEEEEeCC---CcEEEEcCCC--cEEEeeecCCcccccccceEEccCCc
Q 017371          100 WIKRLQ-DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNA---NGLHKVSEDG--VENFLSYVNGSKLRFANDVVEASDGS  173 (372)
Q Consensus       100 ~i~~~~-~g~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~---~gv~~~~~~g--~~~l~~~~~~~~~~~~~~l~~d~dG~  173 (372)
                      .++-++ +|+-..+.-....|+..+.+.++|+=+.+-.+   ..+..++..+  +..+   .+|+    -|.+.+.+.|+
T Consensus       252 ~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df---~egp----RN~~~fnp~g~  324 (566)
T KOG2315|consen  252 TLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDF---PEGP----RNTAFFNPHGN  324 (566)
T ss_pred             eEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeC---CCCC----ccceEECCCCC
Confidence            355565 55544444443455548888898875544333   2466666445  2222   1222    25778888888


Q ss_pred             EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccC--cceEEEecCCCEEEEEeCC
Q 017371          174 LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYF--ANGVALSRDEDYVVVCESW  239 (372)
Q Consensus       174 i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~--~~gi~~~~dg~~l~v~~~~  239 (372)
                      |.+--..              +.-.|.+=.+|..+.  +.+ ..+..  ..-+.|+|||.+++.+.+.
T Consensus       325 ii~lAGF--------------GNL~G~mEvwDv~n~--K~i-~~~~a~~tt~~eW~PdGe~flTATTa  375 (566)
T KOG2315|consen  325 IILLAGF--------------GNLPGDMEVWDVPNR--KLI-AKFKAANTTVFEWSPDGEYFLTATTA  375 (566)
T ss_pred             EEEEeec--------------CCCCCceEEEeccch--hhc-cccccCCceEEEEcCCCcEEEEEecc
Confidence            7663211              113455556665431  111 22222  3356799999999988774

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=88.18  E-value=3.8  Score=40.20  Aligned_cols=145  Identities=9%  Similarity=0.053  Sum_probs=74.3

Q ss_pred             EEEcC-CCcEEEEecCCeEEEEe--CC-ceEEEE---e----cCC----CcccCeEEcCCC-CEEEEeCCCcEEEEc-CC
Q 017371           84 ASMDK-NGVIYTATRDGWIKRLQ--DG-TWVNWK---F----IDS----QTLVGLTSTKEG-HLIICDNANGLHKVS-ED  146 (372)
Q Consensus        84 i~~d~-~G~l~v~~~~g~i~~~~--~g-~~~~~~---~----~~~----~p~~gl~~d~dG-~l~v~~~~~gv~~~~-~~  146 (372)
                      +-+.+ .|-|-+|+.+|.|-.||  +. .+..+.   .    +++    .+. .+.|+.+| .+-|+.....++.+| ..
T Consensus       181 v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svT-al~F~d~gL~~aVGts~G~v~iyDLRa  259 (703)
T KOG2321|consen  181 VSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVT-ALKFRDDGLHVAVGTSTGSVLIYDLRA  259 (703)
T ss_pred             eeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcce-EEEecCCceeEEeeccCCcEEEEEccc
Confidence            33443 45555666778777777  21 222211   1    111    145 78888667 566665544477777 43


Q ss_pred             C-cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEE
Q 017371          147 G-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVA  225 (372)
Q Consensus       147 g-~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~  225 (372)
                      . .-.........+......+.-|....++-+|..                   .+-.+|..+|+.-........-|-+|
T Consensus       260 ~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~-------------------~~kiWd~~~Gk~~asiEpt~~lND~C  320 (703)
T KOG2321|consen  260 SKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKR-------------------ILKIWDECTGKPMASIEPTSDLNDFC  320 (703)
T ss_pred             CCceeecccCCccceeeecccccCCCceEEecchH-------------------HhhhcccccCCceeeccccCCcCcee
Confidence            3 221222111222222222222223344443331                   13335667777666666666678899


Q ss_pred             EecCCCEEEEEeCCCCeEEEEEcc
Q 017371          226 LSRDEDYVVVCESWKFRCRKYWLK  249 (372)
Q Consensus       226 ~~~dg~~l~v~~~~~~~i~~~~~~  249 (372)
                      +-|++..++.++ .+..+..|.+.
T Consensus       321 ~~p~sGm~f~An-e~~~m~~yyiP  343 (703)
T KOG2321|consen  321 FVPGSGMFFTAN-ESSKMHTYYIP  343 (703)
T ss_pred             eecCCceEEEec-CCCcceeEEcc
Confidence            999988565555 44567667664

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=88.08  E-value=17  Score=35.25  Aligned_cols=72  Identities=15%  Similarity=0.060  Sum_probs=45.7

Q ss_pred             ccceEEccCC-cEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCCCC
Q 017371          163 ANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKF  241 (372)
Q Consensus       163 ~~~l~~d~dG-~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~  241 (372)
                      ..+|++.+.. .|+++..                 -+-+|+.||...........--.--..++|.++|. .+++.+.++
T Consensus       211 ~~gicfspsne~l~vsVG-----------------~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~-~L~aG~s~G  272 (673)
T KOG4378|consen  211 CRGICFSPSNEALLVSVG-----------------YDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGT-YLCAGNSKG  272 (673)
T ss_pred             cCcceecCCccceEEEec-----------------ccceEEEeecccccccceeeecCCcceeeecCCce-EEEeecCCc
Confidence            3578888866 5555532                 35679999976443222111111124689999997 455556688


Q ss_pred             eEEEEEccCCC
Q 017371          242 RCRKYWLKGER  252 (372)
Q Consensus       242 ~i~~~~~~g~~  252 (372)
                      +|+.|++.+.+
T Consensus       273 ~~i~YD~R~~k  283 (673)
T KOG4378|consen  273 ELIAYDMRSTK  283 (673)
T ss_pred             eEEEEecccCC
Confidence            99999998653

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=87.99  E-value=19  Score=36.65  Aligned_cols=58  Identities=17%  Similarity=0.298  Sum_probs=34.6

Q ss_pred             eEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeecc--CCCCCCceeEEcCCCCEEEEEec
Q 017371          223 GVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAE--NLPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       223 gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~--~~~g~p~~i~~d~~G~lwva~~~  284 (372)
                      .++++|.-+ +.++...+..|..|++...|  +++.|..  ...|-+--+.+|+.| +|+++..
T Consensus       601 Dm~Vdp~~k-~v~t~cQDrnirif~i~sgK--q~k~FKgs~~~eG~lIKv~lDPSg-iY~atSc  660 (1080)
T KOG1408|consen  601 DMAVDPTSK-LVVTVCQDRNIRIFDIESGK--QVKSFKGSRDHEGDLIKVILDPSG-IYLATSC  660 (1080)
T ss_pred             EeeeCCCcc-eEEEEecccceEEEeccccc--eeeeecccccCCCceEEEEECCCc-cEEEEee
Confidence            466777766 44444455568888886543  3334442  233556678889999 4555543

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=87.78  E-value=18  Score=31.69  Aligned_cols=127  Identities=15%  Similarity=0.103  Sum_probs=77.8

Q ss_pred             CCCeEEEEeCCCCeEEEEe-CCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCce-eEEcC
Q 017371          197 PHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDN-INLAP  274 (372)
Q Consensus       197 ~~g~v~~~d~~t~~~~~~~-~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~-i~~d~  274 (372)
                      ++-.++.+|..||++..-. .....-|.+.|..+.. +.++.+.+..+..++..........++.+.    -|+ +.+|-
T Consensus        79 gDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~s~ePiQildea----~D~V~Si~v  153 (307)
T KOG0316|consen   79 GDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESS-VVASGSFDSSVRLWDCRSRSFEPIQILDEA----KDGVSSIDV  153 (307)
T ss_pred             CCceEEEEEcccCeeeeecccccceeeEEEecCcce-EEEeccccceeEEEEcccCCCCccchhhhh----cCceeEEEe
Confidence            4556888888888865543 3355678899987665 888888888888888765544443343322    244 34566


Q ss_pred             CCCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEEC-CCCcEEEEEECCCCCeeccceeeEEE-
Q 017371          275 DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQV-  352 (372)
Q Consensus       275 ~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~-  352 (372)
                      .++..|+...                                  .|.+-.|| ..|+...-|   -|.   .++++.+. 
T Consensus       154 ~~heIvaGS~----------------------------------DGtvRtydiR~G~l~sDy---~g~---pit~vs~s~  193 (307)
T KOG0316|consen  154 AEHEIVAGSV----------------------------------DGTVRTYDIRKGTLSSDY---FGH---PITSVSFSK  193 (307)
T ss_pred             cccEEEeecc----------------------------------CCcEEEEEeecceeehhh---cCC---cceeEEecC
Confidence            6776676655                                  46777777 456664322   232   46667664 


Q ss_pred             C-CEEEEEeCCCCeEEEE
Q 017371          353 D-NHLYVISLTSNFIGKV  369 (372)
Q Consensus       353 ~-g~L~igs~~~~~i~~~  369 (372)
                      + +.+.++++. ..|.-|
T Consensus       194 d~nc~La~~l~-stlrLl  210 (307)
T KOG0316|consen  194 DGNCSLASSLD-STLRLL  210 (307)
T ss_pred             CCCEEEEeecc-ceeeec
Confidence            3 445555543 444433

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=87.51  E-value=3.2  Score=38.20  Aligned_cols=52  Identities=17%  Similarity=0.134  Sum_probs=36.0

Q ss_pred             CCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccC
Q 017371          197 PHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKG  250 (372)
Q Consensus       197 ~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g  250 (372)
                      ++-.|-.++..|+++.....+  ...|||--.-...+.|+.+.++.|..+++.-
T Consensus       338 gDRTikvW~~st~efvRtl~g--HkRGIAClQYr~rlvVSGSSDntIRlwdi~~  389 (499)
T KOG0281|consen  338 GDRTIKVWSTSTCEFVRTLNG--HKRGIACLQYRDRLVVSGSSDNTIRLWDIEC  389 (499)
T ss_pred             CCceEEEEeccceeeehhhhc--ccccceehhccCeEEEecCCCceEEEEeccc
Confidence            455666777777776555443  3457775555556999999999888888754

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=87.23  E-value=1.4  Score=45.72  Aligned_cols=64  Identities=16%  Similarity=0.125  Sum_probs=50.3

Q ss_pred             CccEEEcCCCcEEEEecCCeEEEEe-CC-ceEEEEecCCCcccCeEEcCCCCEEEEeCCCcEEEEc
Q 017371           81 PEDASMDKNGVIYTATRDGWIKRLQ-DG-TWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS  144 (372)
Q Consensus        81 p~~i~~d~~G~l~v~~~~g~i~~~~-~g-~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~  144 (372)
                      =.+++.+.+|+|.+|+.+|.|.-|+ -| +.++..+..|.|+.||.+..||+..+++...-|+.++
T Consensus       580 Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~  645 (794)
T PF08553_consen  580 FSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLID  645 (794)
T ss_pred             ceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEE
Confidence            3468888999999999999999999 44 3444445668887799999999977777666677766

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=87.10  E-value=11  Score=35.12  Aligned_cols=79  Identities=15%  Similarity=0.162  Sum_probs=50.9

Q ss_pred             cCCeEEEEe--CCc-eEEEEecCCCcccCeEEcCCCCEEEEeCCCc-EEEE-c-CCC--cEEEeeecCCcccccccceEE
Q 017371           97 RDGWIKRLQ--DGT-WVNWKFIDSQTLVGLTSTKEGHLIICDNANG-LHKV-S-EDG--VENFLSYVNGSKLRFANDVVE  168 (372)
Q Consensus        97 ~~g~i~~~~--~g~-~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~g-v~~~-~-~~g--~~~l~~~~~~~~~~~~~~l~~  168 (372)
                      ..|.|+.||  +-+ +..+. ....+++.|+++++|.+..+...+| |.|+ . ++|  +..+...   ...-.+..|+|
T Consensus       151 t~GdV~l~d~~nl~~v~~I~-aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG---~~~~~IySL~F  226 (391)
T KOG2110|consen  151 TSGDVVLFDTINLQPVNTIN-AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRG---TYPVSIYSLSF  226 (391)
T ss_pred             CCceEEEEEcccceeeeEEE-ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCC---ceeeEEEEEEE
Confidence            468888888  222 23333 3334555899999999988877766 4444 4 777  4444332   22346678999


Q ss_pred             ccCCcEEEEeC
Q 017371          169 ASDGSLYFTVS  179 (372)
Q Consensus       169 d~dG~i~vtd~  179 (372)
                      ++++.+..+.+
T Consensus       227 s~ds~~L~~sS  237 (391)
T KOG2110|consen  227 SPDSQFLAASS  237 (391)
T ss_pred             CCCCCeEEEec
Confidence            99999666544

>PHA03098 kelch-like protein; Provisional

Probab=86.81  E-value=36  Score=34.00  Aligned_cols=145  Identities=12%  Similarity=0.084  Sum_probs=70.3

Q ss_pred             CCcEEEEe-cC------CeEEEEe--CCceEEEEecC-CCcccCeEEcCCCCEEEEeCCC------cEEEEc-CCC-cEE
Q 017371           89 NGVIYTAT-RD------GWIKRLQ--DGTWVNWKFID-SQTLVGLTSTKEGHLIICDNAN------GLHKVS-EDG-VEN  150 (372)
Q Consensus        89 ~G~l~v~~-~~------g~i~~~~--~g~~~~~~~~~-~~p~~gl~~d~dG~l~v~~~~~------gv~~~~-~~g-~~~  150 (372)
                      ++.||+.. .+      ..+++++  ++++....... .+...+++. -+|.||+.....      -+.+++ .++ .+.
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~  372 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV-FNNRIYVIGGIYNSISLNTVESWKPGESKWRE  372 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE-ECCEEEEEeCCCCCEecceEEEEcCCCCceee
Confidence            45677643 11      2467777  55665443211 111113333 368899875432      256677 344 443


Q ss_pred             EeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcc-e-EEEec
Q 017371          151 FLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFAN-G-VALSR  228 (372)
Q Consensus       151 l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~-g-i~~~~  228 (372)
                      +... +..+  .-... ..-+|+||+.-....           .......+++||+.+++++.+.. ...+. + .+..-
T Consensus       373 ~~~l-p~~r--~~~~~-~~~~~~iYv~GG~~~-----------~~~~~~~v~~yd~~t~~W~~~~~-~p~~r~~~~~~~~  436 (534)
T PHA03098        373 EPPL-IFPR--YNPCV-VNVNNLIYVIGGISK-----------NDELLKTVECFSLNTNKWSKGSP-LPISHYGGCAIYH  436 (534)
T ss_pred             CCCc-CcCC--ccceE-EEECCEEEEECCcCC-----------CCcccceEEEEeCCCCeeeecCC-CCccccCceEEEE
Confidence            3221 1111  11122 335789999521100           01123568999999888876542 22211 1 12222


Q ss_pred             CCCEEEEEeCCC--------CeEEEEEccCC
Q 017371          229 DEDYVVVCESWK--------FRCRKYWLKGE  251 (372)
Q Consensus       229 dg~~l~v~~~~~--------~~i~~~~~~g~  251 (372)
                      + +.+|+.....        ..+++|++...
T Consensus       437 ~-~~iyv~GG~~~~~~~~~~~~v~~yd~~~~  466 (534)
T PHA03098        437 D-GKIYVIGGISYIDNIKVYNIVESYNPVTN  466 (534)
T ss_pred             C-CEEEEECCccCCCCCcccceEEEecCCCC
Confidence            3 4588865321        23888887643

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=86.69  E-value=30  Score=35.75  Aligned_cols=144  Identities=16%  Similarity=0.166  Sum_probs=77.9

Q ss_pred             cEEEcCCCcEE-EEecCCeEEEEe-CC---c---eEEEEecCCCcccCeEEcCCCCEEEEeCCCcEEE-Ec-CCC-cEEE
Q 017371           83 DASMDKNGVIY-TATRDGWIKRLQ-DG---T---WVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHK-VS-EDG-VENF  151 (372)
Q Consensus        83 ~i~~d~~G~l~-v~~~~g~i~~~~-~g---~---~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~-~~-~~g-~~~l  151 (372)
                      +.++.++++.. .++.+|+|..|. -|   .   .+.+.--..... ++++..+|....+....|++. +. +++ .+.|
T Consensus       210 ~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~-~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfL  288 (792)
T KOG1963|consen  210 CVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVN-SLSFSSDGAYLLSGGREGVLVLWQLETGKKQFL  288 (792)
T ss_pred             eEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccc-eeEEecCCceEeecccceEEEEEeecCCCcccc
Confidence            45666777544 445889998887 22   1   222222223455 999999996444433445444 44 455 4433


Q ss_pred             eeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCC------------cc
Q 017371          152 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG------------FY  219 (372)
Q Consensus       152 ~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~------------~~  219 (372)
                      +. ..    ..+-++.+.+|+..|-.-.                 .+..|..+...+-+.+....+            -.
T Consensus       289 PR-Lg----s~I~~i~vS~ds~~~sl~~-----------------~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~  346 (792)
T KOG1963|consen  289 PR-LG----SPILHIVVSPDSDLYSLVL-----------------EDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQS  346 (792)
T ss_pred             cc-cC----CeeEEEEEcCCCCeEEEEe-----------------cCceEEEEeccchhhhhhccCccCCCccccccccc
Confidence            22 12    1345788889998776422                 234454444322222222222            23


Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEEccC
Q 017371          220 FANGVALSRDEDYVVVCESWKFRCRKYWLKG  250 (372)
Q Consensus       220 ~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g  250 (372)
                      .+.+++++|--+.+. -+...+.|..|++-.
T Consensus       347 l~t~~~idpr~~~~v-ln~~~g~vQ~ydl~t  376 (792)
T KOG1963|consen  347 LTTGVSIDPRTNSLV-LNGHPGHVQFYDLYT  376 (792)
T ss_pred             cceeEEEcCCCCcee-ecCCCceEEEEeccc
Confidence            456788888544333 333456788888754

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=86.60  E-value=17  Score=34.91  Aligned_cols=30  Identities=17%  Similarity=0.297  Sum_probs=24.1

Q ss_pred             CCCccEEEcCCC-cEEEEecCCeEEEEe--CCc
Q 017371           79 NHPEDASMDKNG-VIYTATRDGWIKRLQ--DGT  108 (372)
Q Consensus        79 ~~p~~i~~d~~G-~l~v~~~~g~i~~~~--~g~  108 (372)
                      +||-.+-...+| .|.+|...|-|-.+|  ++.
T Consensus       130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~  162 (545)
T KOG1272|consen  130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKK  162 (545)
T ss_pred             cCCeeeeecCCccEEEecCCccceeeeecccce
Confidence            588899999888 577777888898888  554

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=86.55  E-value=31  Score=33.07  Aligned_cols=129  Identities=13%  Similarity=0.158  Sum_probs=69.6

Q ss_pred             CeEEcCCCC-EEEEeCCCcEEEEc-CCC--cE-EEeee----cCCcccc--------cccceEEccCCcEEEEeCCCCCC
Q 017371          122 GLTSTKEGH-LIICDNANGLHKVS-EDG--VE-NFLSY----VNGSKLR--------FANDVVEASDGSLYFTVSSSKYL  184 (372)
Q Consensus       122 gl~~d~dG~-l~v~~~~~gv~~~~-~~g--~~-~l~~~----~~~~~~~--------~~~~l~~d~dG~i~vtd~~~~~~  184 (372)
                      ++++.+|+. .|-+....-|.+++ .+|  .+ .+...    ..+.+..        ..-.+++.+||+..++       
T Consensus       147 ~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylat-------  219 (479)
T KOG0299|consen  147 SVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLAT-------  219 (479)
T ss_pred             EEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEe-------
Confidence            888887774 55554444477776 555  21 22111    0111111        2336888999996664       


Q ss_pred             CcccccccccccCCCeEEEEeCCCCeEEEEeCCccC-cceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCC
Q 017371          185 PHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYF-ANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENL  263 (372)
Q Consensus       185 ~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~-~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~  263 (372)
                                +.....|..++.+|.+-.....+... -.+++|-.....||.+.. +..|..+.++.  ..    +.+.+
T Consensus       220 ----------gg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~-Drsvkvw~~~~--~s----~vetl  282 (479)
T KOG0299|consen  220 ----------GGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASA-DRSVKVWSIDQ--LS----YVETL  282 (479)
T ss_pred             ----------cCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeec-CCceEEEehhH--hH----HHHHH
Confidence                      22344566778877765544444333 346777766667887764 44466555542  12    23344


Q ss_pred             CCCCceeE-EcC
Q 017371          264 PGAPDNIN-LAP  274 (372)
Q Consensus       264 ~g~p~~i~-~d~  274 (372)
                      .|.++++. +|.
T Consensus       283 yGHqd~v~~Ida  294 (479)
T KOG0299|consen  283 YGHQDGVLGIDA  294 (479)
T ss_pred             hCCccceeeech
Confidence            45566643 443

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=86.40  E-value=21  Score=30.97  Aligned_cols=22  Identities=14%  Similarity=-0.014  Sum_probs=15.9

Q ss_pred             eEEEecCCCEEEEEeCCCCeEEE
Q 017371          223 GVALSRDEDYVVVCESWKFRCRK  245 (372)
Q Consensus       223 gi~~~~dg~~l~v~~~~~~~i~~  245 (372)
                      -.+|+|+|. |+.+.+++..|..
T Consensus        94 c~~ws~~ge-liatgsndk~ik~  115 (350)
T KOG0641|consen   94 CTAWSPCGE-LIATGSNDKTIKV  115 (350)
T ss_pred             EEEecCccC-eEEecCCCceEEE
Confidence            478999997 8877776654443

>PRK10115 protease 2; Provisional

Probab=86.37  E-value=44  Score=34.67  Aligned_cols=53  Identities=4%  Similarity=-0.109  Sum_probs=33.5

Q ss_pred             CCCeEEEEeCCCCeEE-EEeCCccCcceEEEecCCCEEEEEeCC-----CCeEEEEEccCC
Q 017371          197 PHGQLLKYDPSSNITT-LVADGFYFANGVALSRDEDYVVVCESW-----KFRCRKYWLKGE  251 (372)
Q Consensus       197 ~~g~v~~~d~~t~~~~-~~~~~~~~~~gi~~~~dg~~l~v~~~~-----~~~i~~~~~~g~  251 (372)
                      ..-.|+.+|..+|+.. ....+..  ..++|++|++.+|++...     ...|+++++.+.
T Consensus       151 E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~  209 (686)
T PRK10115        151 RQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTP  209 (686)
T ss_pred             EEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCC
Confidence            3446888898877521 1112222  458999999888887432     257888887654

>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller

Probab=86.26  E-value=0.61  Score=28.24  Aligned_cols=19  Identities=11%  Similarity=0.307  Sum_probs=16.7

Q ss_pred             CCceeEEcCCCCEEEEEec
Q 017371          266 APDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       266 ~p~~i~~d~~G~lwva~~~  284 (372)
                      .+.+|++|++||+||+-..
T Consensus        14 ~~~~IavD~~GNiYv~G~T   32 (38)
T PF06739_consen   14 YGNGIAVDSNGNIYVTGYT   32 (38)
T ss_pred             eEEEEEECCCCCEEEEEee
Confidence            3789999999999999765

SBBP stands for Seven Bladed Beta Propeller.

>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]

Probab=86.07  E-value=35  Score=36.55  Aligned_cols=177  Identities=17%  Similarity=0.207  Sum_probs=102.5

Q ss_pred             CCccEEEc-CCCcEEEEe-cCCeEEEEe-CCceEE--EEecCCCcccCeEEc-CCCCEEEEeCCCcEEE-EcCCC-c-EE
Q 017371           80 HPEDASMD-KNGVIYTAT-RDGWIKRLQ-DGTWVN--WKFIDSQTLVGLTST-KEGHLIICDNANGLHK-VSEDG-V-EN  150 (372)
Q Consensus        80 ~p~~i~~d-~~G~l~v~~-~~g~i~~~~-~g~~~~--~~~~~~~p~~gl~~d-~dG~l~v~~~~~gv~~-~~~~g-~-~~  150 (372)
                      .+..+.++ .++.+|..+ ....|.+.. ++....  .....-.+. +++.| -.+++|.+|...-... .+.+| . .+
T Consensus       438 ~~~~~d~d~~~~~i~~~d~~~~~i~~~~~~~~~~~~~~~~g~~~~~-~lavD~~~~~~y~tDe~~~~i~v~~~~g~~~~v  516 (877)
T KOG1215|consen  438 NAVALDFDVLNNRIYWADLSDEKICRASQDGSSECELCGDGLCIPE-GLAVDWIGDNIYWTDEGNCLIEVADLDGSSRKV  516 (877)
T ss_pred             cceEEEEEecCCEEEEEeccCCeEeeeccCCCccceEeccCccccC-cEEEEeccCCceecccCCceeEEEEccCCceeE
Confidence            33344444 355788887 566777776 443322  233344567 99998 4557888887643333 33455 3 33


Q ss_pred             EeeecCCcccccccceEEcc-CCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEE-EeCCccCcceEEEec
Q 017371          151 FLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VADGFYFANGVALSR  228 (372)
Q Consensus       151 l~~~~~~~~~~~~~~l~~d~-dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~-~~~~~~~~~gi~~~~  228 (372)
                      +....    ...+..+++++ .|.+|.+|.+.                ..++-|-..+...... +..+...|+|++++-
T Consensus       517 l~~~~----l~~~r~~~v~p~~g~~~wtd~~~----------------~~~i~ra~~dg~~~~~l~~~~~~~p~glt~d~  576 (877)
T KOG1215|consen  517 LVSKD----LDLPRSIAVDPEKGLMFWTDWGQ----------------PPRIERASLDGSERAVLVTNGILWPNGLTIDY  576 (877)
T ss_pred             EEecC----CCCccceeeccccCeeEEecCCC----------------CchhhhhcCCCCCceEEEeCCccCCCcceEEe
Confidence            33221    13566888987 46778776531                1134444443223333 334478899999998


Q ss_pred             CCCEEEEEeCCCC-eEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEE
Q 017371          229 DEDYVVVCESWKF-RCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWI  280 (372)
Q Consensus       229 dg~~l~v~~~~~~-~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv  280 (372)
                      ..+.+|+.+.-.. .+.....+|....   .........|.++.+-.+.-+|.
T Consensus       577 ~~~~~yw~d~~~~~~i~~~~~~g~~r~---~~~~~~~~~p~~~~~~~~~iyw~  626 (877)
T KOG1215|consen  577 ETDRLYWADAKLDYTIESANMDGQNRR---VVDSEDLPHPFGLSVFEDYIYWT  626 (877)
T ss_pred             ecceeEEEcccCCcceeeeecCCCceE---EeccccCCCceEEEEecceeEEe
Confidence            7788999998777 6888888764322   11112223466777655544444

>PHA02790 Kelch-like protein; Provisional

Probab=86.05  E-value=37  Score=33.48  Aligned_cols=50  Identities=6%  Similarity=-0.058  Sum_probs=28.2

Q ss_pred             CeEEEEeCCCCeEEEEeCCccCcc-eEE-EecCCCEEEEEeCCC---CeEEEEEccC
Q 017371          199 GQLLKYDPSSNITTLVADGFYFAN-GVA-LSRDEDYVVVCESWK---FRCRKYWLKG  250 (372)
Q Consensus       199 g~v~~~d~~t~~~~~~~~~~~~~~-gi~-~~~dg~~l~v~~~~~---~~i~~~~~~g  250 (372)
                      ..+.+||+.+++++.+.. +..+. +.+ ..-+| .+|+.....   ..+.+|++..
T Consensus       331 ~sve~ydp~~n~W~~~~~-l~~~r~~~~~~~~~g-~IYviGG~~~~~~~ve~ydp~~  385 (480)
T PHA02790        331 TSVERWFHGDAAWVNMPS-LLKPRCNPAVASINN-VIYVIGGHSETDTTTEYLLPNH  385 (480)
T ss_pred             CceEEEECCCCeEEECCC-CCCCCcccEEEEECC-EEEEecCcCCCCccEEEEeCCC
Confidence            458899998887766543 33222 222 22234 588875322   3477787654

>PHA03098 kelch-like protein; Provisional

Probab=85.86  E-value=24  Score=35.29  Aligned_cols=145  Identities=13%  Similarity=0.084  Sum_probs=67.6

Q ss_pred             CCcEEEEe-cC-----CeEEEEe--CCceEEEEec-CCCcccCeEEcCCCCEEEEeCC-------CcEEEEc-CCC-cEE
Q 017371           89 NGVIYTAT-RD-----GWIKRLQ--DGTWVNWKFI-DSQTLVGLTSTKEGHLIICDNA-------NGLHKVS-EDG-VEN  150 (372)
Q Consensus        89 ~G~l~v~~-~~-----g~i~~~~--~g~~~~~~~~-~~~p~~gl~~d~dG~l~v~~~~-------~gv~~~~-~~g-~~~  150 (372)
                      +|.||+-. .+     ..+.+++  +++|+..... ..+...+.+. -+|.|||....       ..+.++| .++ .+.
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~  420 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSK  420 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeee
Confidence            56777643 11     2356666  4555543321 1111102222 36889987541       2367777 444 444


Q ss_pred             EeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcc---eEEEe
Q 017371          151 FLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFAN---GVALS  227 (372)
Q Consensus       151 l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~---gi~~~  227 (372)
                      +.. .+...  .- .-++.-+|+||+.-.....         ........+++||+.+++++.+.. +..|.   +++. 
T Consensus       421 ~~~-~p~~r--~~-~~~~~~~~~iyv~GG~~~~---------~~~~~~~~v~~yd~~~~~W~~~~~-~~~~r~~~~~~~-  485 (534)
T PHA03098        421 GSP-LPISH--YG-GCAIYHDGKIYVIGGISYI---------DNIKVYNIVESYNPVTNKWTELSS-LNFPRINASLCI-  485 (534)
T ss_pred             cCC-CCccc--cC-ceEEEECCEEEEECCccCC---------CCCcccceEEEecCCCCceeeCCC-CCcccccceEEE-
Confidence            322 11111  11 1233356889985321000         000012349999999888877542 22221   2222 


Q ss_pred             cCCCEEEEEeCC-----CCeEEEEEccC
Q 017371          228 RDEDYVVVCESW-----KFRCRKYWLKG  250 (372)
Q Consensus       228 ~dg~~l~v~~~~-----~~~i~~~~~~g  250 (372)
                      -++ .+|+....     .+.+++|+++.
T Consensus       486 ~~~-~iyv~GG~~~~~~~~~v~~yd~~~  512 (534)
T PHA03098        486 FNN-KIYVVGGDKYEYYINEIEVYDDKT  512 (534)
T ss_pred             ECC-EEEEEcCCcCCcccceeEEEeCCC
Confidence            233 47766432     13466666543

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=85.75  E-value=17  Score=36.45  Aligned_cols=130  Identities=18%  Similarity=0.153  Sum_probs=71.3

Q ss_pred             EEEcC--CCcEEEEecCCeEEEEe---CCc------eEEEEecC-CCcccCeEEcCC--CCEEEEeCCCcEEEEc-CCC-
Q 017371           84 ASMDK--NGVIYTATRDGWIKRLQ---DGT------WVNWKFID-SQTLVGLTSTKE--GHLIICDNANGLHKVS-EDG-  147 (372)
Q Consensus        84 i~~d~--~G~l~v~~~~g~i~~~~---~g~------~~~~~~~~-~~p~~gl~~d~d--G~l~v~~~~~gv~~~~-~~g-  147 (372)
                      +..|+  +.+|-+++.+|+|..|.   +|-      .+.+.... .... .|.|.|-  .-|.++..+..|-.+| .++ 
T Consensus       633 l~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~-slRfHPLAadvLa~asyd~Ti~lWDl~~~~  711 (1012)
T KOG1445|consen  633 LHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKIT-SLRFHPLAADVLAVASYDSTIELWDLANAK  711 (1012)
T ss_pred             cccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEE-EEEecchhhhHhhhhhccceeeeeehhhhh
Confidence            44553  34788888888775554   331      11222222 2234 6666642  2344444445566677 444 


Q ss_pred             -cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCc-----
Q 017371          148 -VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA-----  221 (372)
Q Consensus       148 -~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~-----  221 (372)
                       ...+...     ...+.+++..++|+...+.                 ..+|+|..|+|..++..+. .+ ..|     
T Consensus       712 ~~~~l~gH-----tdqIf~~AWSpdGr~~AtV-----------------cKDg~~rVy~Prs~e~pv~-Eg-~gpvgtRg  767 (1012)
T KOG1445|consen  712 LYSRLVGH-----TDQIFGIAWSPDGRRIATV-----------------CKDGTLRVYEPRSREQPVY-EG-KGPVGTRG  767 (1012)
T ss_pred             hhheeccC-----cCceeEEEECCCCcceeee-----------------ecCceEEEeCCCCCCCccc-cC-CCCccCcc
Confidence             2212111     1256689999999877653                 2688999999986654332 21 222     


Q ss_pred             ceEEEecCCCEEEEEeC
Q 017371          222 NGVALSRDEDYVVVCES  238 (372)
Q Consensus       222 ~gi~~~~dg~~l~v~~~  238 (372)
                      ..|.|.=||+.++++..
T Consensus       768 ARi~wacdgr~viv~Gf  784 (1012)
T KOG1445|consen  768 ARILWACDGRIVIVVGF  784 (1012)
T ss_pred             eeEEEEecCcEEEEecc
Confidence            23556667776666543

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=85.65  E-value=56  Score=35.13  Aligned_cols=199  Identities=13%  Similarity=0.081  Sum_probs=98.1

Q ss_pred             CcccCeEEc---CCCCEEEEeCCCcEEEEcCCCcEEEeeecCCcccccccceEEcc-CCcEEEEeCCCCCCCcccccccc
Q 017371          118 QTLVGLTST---KEGHLIICDNANGLHKVSEDGVENFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDIL  193 (372)
Q Consensus       118 ~p~~gl~~d---~dG~l~v~~~~~gv~~~~~~g~~~l~~~~~~~~~~~~~~l~~d~-dG~i~vtd~~~~~~~~~~~~~~~  193 (372)
                      +-. |+.+|   -.|.|+++..-+-|..+|.+. +......+......+..+.-+. .|++.++                
T Consensus      1165 r~~-~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~-E~~~~diP~~s~t~vTaLS~~~~~gn~i~A---------------- 1226 (1387)
T KOG1517|consen 1165 RGT-GLVVDWQQQSGHLLVTGDVRSIRIWDAHK-EQVVADIPYGSSTLVTALSADLVHGNIIAA---------------- 1226 (1387)
T ss_pred             CCC-CeeeehhhhCCeEEecCCeeEEEEEeccc-ceeEeecccCCCccceeecccccCCceEEE----------------
Confidence            334 66666   467788775433345555222 2222222222222333444442 3566664                


Q ss_pred             cccCCCeEEEEeCCCCeE---EEEeCCccC---cceEEEecCCCEEEEEeCCCCeEEEEEccCC-CCcceeeeccCCCC-
Q 017371          194 EGKPHGQLLKYDPSSNIT---TLVADGFYF---ANGVALSRDEDYVVVCESWKFRCRKYWLKGE-RKGKLETFAENLPG-  265 (372)
Q Consensus       194 ~~~~~g~v~~~d~~t~~~---~~~~~~~~~---~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~-~~~~~~~~~~~~~g-  265 (372)
                       +-.+|.|..||-..-..   .........   -.++.+-+.|-.-+|+.+.++.|..+++..+ +.........-..| 
T Consensus      1227 -GfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs 1305 (1387)
T KOG1517|consen 1227 -GFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGS 1305 (1387)
T ss_pred             -eecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCc
Confidence             33567777776321111   001111111   2445565655445677778888999998763 11111111111112 


Q ss_pred             CCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEECCCCcEEEEEECCC---CCe
Q 017371          266 APDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPT---GQL  342 (372)
Q Consensus       266 ~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~---g~~  342 (372)
                      -...+.+-++-.+..+..+                                   ..+..|+-.|+.+..+....   |..
T Consensus      1306 ~lTal~VH~hapiiAsGs~-----------------------------------q~ikIy~~~G~~l~~~k~n~~F~~q~ 1350 (1387)
T KOG1517|consen 1306 ALTALTVHEHAPIIASGSA-----------------------------------QLIKIYSLSGEQLNIIKYNPGFMGQR 1350 (1387)
T ss_pred             cceeeeeccCCCeeeecCc-----------------------------------ceEEEEecChhhhcccccCcccccCc
Confidence            1344566665555544432                                   35666677776655443222   333


Q ss_pred             eccceeeEEECCE-EEEEeCCCCeEEEEe
Q 017371          343 MSFVTSGLQVDNH-LYVISLTSNFIGKVQ  370 (372)
Q Consensus       343 ~~~~t~~~~~~g~-L~igs~~~~~i~~~~  370 (372)
                      ...+++..++..+ +..++...++|.++.
T Consensus      1351 ~gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1351 IGSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred             CCCcceeeecchhHhhhhccCCceEEEee
Confidence            3456788887643 444457778887765

>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats

Probab=85.54  E-value=35  Score=34.06  Aligned_cols=103  Identities=17%  Similarity=0.203  Sum_probs=63.3

Q ss_pred             eEEEEEccCCCCcceeeeccCCCC-CCceeEEcC-CCCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCc
Q 017371          242 RCRKYWLKGERKGKLETFAENLPG-APDNINLAP-DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGG  319 (372)
Q Consensus       242 ~i~~~~~~g~~~~~~~~~~~~~~g-~p~~i~~d~-~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~  319 (372)
                      .|++|.+++.+..-...  ...+| ..+.+++|. +|+|=|++.....                       ++.......
T Consensus       249 ~I~kf~~~~~~~~y~~s--g~V~G~llnqFsmdE~~G~LRvaTT~~~~-----------------------~~~~~~~s~  303 (521)
T PF09826_consen  249 TIYKFALDGGKIEYVGS--GSVPGYLLNQFSMDEYDGYLRVATTSGNW-----------------------WWDSEDTSS  303 (521)
T ss_pred             EEEEEEccCCcEEEEEE--EEECcEEcccccEeccCCEEEEEEecCcc-----------------------cccCCCCce
Confidence            47777776543221111  11334 345677886 5577777754100                       000113446


Q ss_pred             eEEEEECCCCcEEEEEECC-CCCeeccceeeEEECCEEEEEeCCC-CeEEEEeCC
Q 017371          320 AHLIHVAEDGTIIRNLVDP-TGQLMSFVTSGLQVDNHLYVISLTS-NFIGKVQLS  372 (372)
Q Consensus       320 ~~v~~~~~~g~~~~~~~~~-~g~~~~~~t~~~~~~g~L~igs~~~-~~i~~~~~~  372 (372)
                      +.|+.+|.+-+.+..+.+- .|.   .+.++.+.+++.|+-++.. +-+-++||+
T Consensus       304 N~lyVLD~~L~~vG~l~~la~gE---~IysvRF~Gd~~Y~VTFrqvDPLfviDLs  355 (521)
T PF09826_consen  304 NNLYVLDEDLKIVGSLEGLAPGE---RIYSVRFMGDRAYLVTFRQVDPLFVIDLS  355 (521)
T ss_pred             EEEEEECCCCcEeEEccccCCCc---eEEEEEEeCCeEEEEEEeecCceEEEECC
Confidence            7899999887887776542 222   5899999999999999877 777777764

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=85.43  E-value=2.6  Score=25.48  Aligned_cols=31  Identities=26%  Similarity=0.427  Sum_probs=22.0

Q ss_pred             CCCCCccEEEcC-CCcEEEEe-cCCeEEEEe-CC
Q 017371           77 SVNHPEDASMDK-NGVIYTAT-RDGWIKRLQ-DG  107 (372)
Q Consensus        77 ~~~~p~~i~~d~-~G~l~v~~-~~g~i~~~~-~g  107 (372)
                      .+..|.++++|+ ++.||+++ ..+.|.+.+ +|
T Consensus         7 ~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g   40 (43)
T smart00135        7 GLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDG   40 (43)
T ss_pred             CCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCC
Confidence            367888888886 45788888 456677766 44

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=85.30  E-value=48  Score=34.05  Aligned_cols=175  Identities=12%  Similarity=0.053  Sum_probs=88.3

Q ss_pred             CccEEEcCCC-cEEEEecCCeEEEEe-CCceEEEEec-C-CCcccCeEEcCCCCEEEEeCC-CcEEEEc---CCC-cEEE
Q 017371           81 PEDASMDKNG-VIYTATRDGWIKRLQ-DGTWVNWKFI-D-SQTLVGLTSTKEGHLIICDNA-NGLHKVS---EDG-VENF  151 (372)
Q Consensus        81 p~~i~~d~~G-~l~v~~~~g~i~~~~-~g~~~~~~~~-~-~~p~~gl~~d~dG~l~v~~~~-~gv~~~~---~~g-~~~l  151 (372)
                      ..++...++. .|-+|-.||.|..|+ ..+...+... . .... -|.+|..|..+++... .-+..+|   +.| .+.-
T Consensus        68 vt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt-~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~  146 (888)
T KOG0306|consen   68 VTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVT-TLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLR  146 (888)
T ss_pred             EEEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceE-EEEEcccCceEeecCCCccEEEEEeccceeeEEee
Confidence            3445444444 345666888777777 2221111111 1 1223 5678888876666443 3467777   344 3321


Q ss_pred             eeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeE-EEEeCCccCcceEEEecCC
Q 017371          152 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT-TLVADGFYFANGVALSRDE  230 (372)
Q Consensus       152 ~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~-~~~~~~~~~~~gi~~~~dg  230 (372)
                      .+..      .+...-+-.+.++.++.+                 .++.+-.+|.++... ++....-..-.++++++  
T Consensus       147 GHkd------~iT~~~F~~~~~~lvS~s-----------------KDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--  201 (888)
T KOG0306|consen  147 GHKD------SITQALFLNGDSFLVSVS-----------------KDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--  201 (888)
T ss_pred             cchH------HHhHHhccCCCeEEEEec-----------------cCceEEEEecccceeeeEEecccceEEEEEEec--
Confidence            1110      111222223445666543                 345555666665442 22333333345677775  


Q ss_pred             CEEEEEeCCCCeEEEEEcc--CC--------CCcceeeeccCCCCCCceeEEcCCCCEEEEE
Q 017371          231 DYVVVCESWKFRCRKYWLK--GE--------RKGKLETFAENLPGAPDNINLAPDGTFWIAI  282 (372)
Q Consensus       231 ~~l~v~~~~~~~i~~~~~~--g~--------~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~  282 (372)
                      + +.++...+..+..|.+.  ..        +......+..+..+.+.++..|.++++.+..
T Consensus       202 ~-~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~  262 (888)
T KOG0306|consen  202 K-LLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQ  262 (888)
T ss_pred             c-eEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEe
Confidence            3 55555555556555552  11        1122234444455678899999999865554

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=85.02  E-value=45  Score=33.56  Aligned_cols=167  Identities=18%  Similarity=0.231  Sum_probs=81.1

Q ss_pred             CCCc-EEEEecCCeEEEEe----CCceEE-----EEecCCCcccCeEEcCCCC-EEEEeCCCcEEEEc--CCC---cEEE
Q 017371           88 KNGV-IYTATRDGWIKRLQ----DGTWVN-----WKFIDSQTLVGLTSTKEGH-LIICDNANGLHKVS--EDG---VENF  151 (372)
Q Consensus        88 ~~G~-l~v~~~~g~i~~~~----~g~~~~-----~~~~~~~p~~gl~~d~dG~-l~v~~~~~gv~~~~--~~g---~~~l  151 (372)
                      ++|+ ||.|..||.|..++    .++.+.     +..-....+ .++...+|+ |.-+..+..|..++  .++   ...+
T Consensus        35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVN-DiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~sti  113 (735)
T KOG0308|consen   35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVN-DIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTI  113 (735)
T ss_pred             CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHh-hHHhhcCCCceEEecCCceEEEeecccCcchhHhhh
Confidence            3555 88888999888887    222111     001111233 566666674 44444445677776  222   2222


Q ss_pred             eeecCCcccccccceEE-ccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeC-------Ccc-Cc-
Q 017371          152 LSYVNGSKLRFANDVVE-ASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-------GFY-FA-  221 (372)
Q Consensus       152 ~~~~~~~~~~~~~~l~~-d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~-------~~~-~~-  221 (372)
                      ...     --++..++. .++..+.++                 +.-+++|+.+|..++..+.++.       .+. .| 
T Consensus       114 r~H-----~DYVkcla~~ak~~~lvaS-----------------gGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k  171 (735)
T KOG0308|consen  114 RTH-----KDYVKCLAYIAKNNELVAS-----------------GGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPK  171 (735)
T ss_pred             hcc-----cchheeeeecccCceeEEe-----------------cCCCccEEEEEccCcchhhhhhccccccccCCCCCc
Confidence            111     124455666 455555554                 2245567777766553212111       111 11 


Q ss_pred             ---ceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCce---eEEcCCCCEEEEEec
Q 017371          222 ---NGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDN---INLAPDGTFWIAIIK  284 (372)
Q Consensus       222 ---~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~---i~~d~~G~lwva~~~  284 (372)
                         ..++..+.| +++++......|..|++...+  +   .+ .+.|..+|   +.++.||+-.++..+
T Consensus       172 ~siYSLA~N~t~-t~ivsGgtek~lr~wDprt~~--k---im-kLrGHTdNVr~ll~~dDGt~~ls~sS  233 (735)
T KOG0308|consen  172 DSIYSLAMNQTG-TIIVSGGTEKDLRLWDPRTCK--K---IM-KLRGHTDNVRVLLVNDDGTRLLSASS  233 (735)
T ss_pred             cceeeeecCCcc-eEEEecCcccceEEecccccc--c---ee-eeeccccceEEEEEcCCCCeEeecCC
Confidence               234555445 477766555555555554321  1   11 12244455   557889965555443

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.50  E-value=37  Score=32.09  Aligned_cols=55  Identities=11%  Similarity=0.134  Sum_probs=30.9

Q ss_pred             CeEEcCCCCEEEEeCCCcEEEE-c-CCCcEEEeeecCCcccccccceEEccCCcEEEEeC
Q 017371          122 GLTSTKEGHLIICDNANGLHKV-S-EDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVS  179 (372)
Q Consensus       122 gl~~d~dG~l~v~~~~~gv~~~-~-~~g~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~  179 (372)
                      -+++..+|.+.-+....|.+|+ + ++-...+.   .......+++|++.+||++.++-.
T Consensus       149 ~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~---e~~~~~eV~DL~FS~dgk~lasig  205 (398)
T KOG0771|consen  149 VVAFNGDGSKLATGGTDGTLRVWEWPSMLTILE---EIAHHAEVKDLDFSPDGKFLASIG  205 (398)
T ss_pred             EEEEcCCCCEeeeccccceEEEEecCcchhhhh---hHhhcCccccceeCCCCcEEEEec
Confidence            4667777765554433454443 3 33211110   111235788999999999887644

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=84.40  E-value=38  Score=32.15  Aligned_cols=38  Identities=24%  Similarity=0.330  Sum_probs=22.7

Q ss_pred             CeEEEEeCCCCeEEEEeCCccC-c-ceEEEecCCCEEEEEe
Q 017371          199 GQLLKYDPSSNITTLVADGFYF-A-NGVALSRDEDYVVVCE  237 (372)
Q Consensus       199 g~v~~~d~~t~~~~~~~~~~~~-~-~gi~~~~dg~~l~v~~  237 (372)
                      ..|++||+.+.+++.+.. +.. + .+.++..-++.+|+..
T Consensus       189 ~~v~~YD~~t~~W~~~~~-~p~~~~~~~a~v~~~~~iYv~G  228 (376)
T PRK14131        189 KEVLSYDPSTNQWKNAGE-SPFLGTAGSAVVIKGNKLWLIN  228 (376)
T ss_pred             ceEEEEECCCCeeeECCc-CCCCCCCcceEEEECCEEEEEe
Confidence            569999999888876543 222 1 2333322234588765

>PF14339 DUF4394: Domain of unknown function (DUF4394)

Probab=84.20  E-value=29  Score=30.58  Aligned_cols=111  Identities=14%  Similarity=0.099  Sum_probs=63.1

Q ss_pred             CcccCeEEc-CCCCEEEEeCCCcEEEEc-CCC-cEEEe-eecCCcccccccceEEccC-CcEEEEeCCCCCCCccccccc
Q 017371          118 QTLVGLTST-KEGHLIICDNANGLHKVS-EDG-VENFL-SYVNGSKLRFANDVVEASD-GSLYFTVSSSKYLPHEYCLDI  192 (372)
Q Consensus       118 ~p~~gl~~d-~dG~l~v~~~~~gv~~~~-~~g-~~~l~-~~~~~~~~~~~~~l~~d~d-G~i~vtd~~~~~~~~~~~~~~  192 (372)
                      ... ||.+. .+|.||-.....+++.++ .+| .+.+. ............++.|.|- .+|-|-               
T Consensus        28 ~l~-GID~Rpa~G~LYgl~~~g~lYtIn~~tG~aT~vg~s~~~~al~g~~~gvDFNP~aDRlRvv---------------   91 (236)
T PF14339_consen   28 SLV-GIDFRPANGQLYGLGSTGRLYTINPATGAATPVGASPLTVALSGTAFGVDFNPAADRLRVV---------------   91 (236)
T ss_pred             eEE-EEEeecCCCCEEEEeCCCcEEEEECCCCeEEEeecccccccccCceEEEecCcccCcEEEE---------------
Confidence            334 77777 467888776667799999 677 44442 1111111112345556553 466553               


Q ss_pred             ccccCCCeEEEEeCCCCeEEEEeCCccC----------cc--eEEEe-----cC-CCEEEEEeCCCCeEEEEE
Q 017371          193 LEGKPHGQLLKYDPSSNITTLVADGFYF----------AN--GVALS-----RD-EDYVVVCESWKFRCRKYW  247 (372)
Q Consensus       193 ~~~~~~g~v~~~d~~t~~~~~~~~~~~~----------~~--gi~~~-----~d-g~~l~v~~~~~~~i~~~~  247 (372)
                         ...|.-+|+++++|.+...-..+..          |.  +.++.     +. ...||-.|...+.+++-.
T Consensus        92 ---s~~GqNlR~npdtGav~~~Dg~L~y~~gd~~~G~~p~v~aaAYTNs~~g~~t~TtLy~ID~~~~~Lv~Q~  161 (236)
T PF14339_consen   92 ---SNTGQNLRLNPDTGAVTIVDGNLAYAAGDMNAGTTPGVTAAAYTNSFAGATTSTTLYDIDTTLDALVTQN  161 (236)
T ss_pred             ---ccCCcEEEECCCCCCceeccCccccCCCccccCCCCceEEEEEecccCCCccceEEEEEecCCCeEEEec
Confidence               2356788999988875433222222          21  22332     22 467888888888887764

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.01  E-value=11  Score=40.12  Aligned_cols=133  Identities=13%  Similarity=0.069  Sum_probs=63.6

Q ss_pred             CcEEEEecCCeEEEEe-C-----CceEEE---EecCCCcccCeEEcCCCC-EEEEeCCC-cEEEEcCCC-cEEEeeecCC
Q 017371           90 GVIYTATRDGWIKRLQ-D-----GTWVNW---KFIDSQTLVGLTSTKEGH-LIICDNAN-GLHKVSEDG-VENFLSYVNG  157 (372)
Q Consensus        90 G~l~v~~~~g~i~~~~-~-----g~~~~~---~~~~~~p~~gl~~d~dG~-l~v~~~~~-gv~~~~~~g-~~~l~~~~~~  157 (372)
                      |-|--|..||.|..|+ +     ++...+   ..-.|... ||-|.+.+. +....... .|+.+|-+. .+....  .+
T Consensus        81 GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~-gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~--~~  157 (1049)
T KOG0307|consen   81 GLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVL-GLDFNPFQGNLLASGADDGEILIWDLNKPETPFTP--GS  157 (1049)
T ss_pred             ceeeccccCCceEEecchhhccCcchHHHhhhcccCCcee-eeeccccCCceeeccCCCCcEEEeccCCcCCCCCC--CC
Confidence            3344444788888887 2     122211   22234556 888887765 44443333 377887222 111100  01


Q ss_pred             c-ccccccceEEccC-CcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCc---cCcceEEEecCCCE
Q 017371          158 S-KLRFANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF---YFANGVALSRDEDY  232 (372)
Q Consensus       158 ~-~~~~~~~l~~d~d-G~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~---~~~~gi~~~~dg~~  232 (372)
                      . ....+..|+.... -+|+-                 .+..+|+...+|...++..+-....   ..-++++|+|+...
T Consensus       158 ~~~~~eI~~lsWNrkvqhILA-----------------S~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aT  220 (1049)
T KOG0307|consen  158 QAPPSEIKCLSWNRKVSHILA-----------------SGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHAT  220 (1049)
T ss_pred             CCCcccceEeccchhhhHHhh-----------------ccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCce
Confidence            0 0111222222211 12322                 2345677888887633221111111   12348999999876


Q ss_pred             EEEEeCCCCe
Q 017371          233 VVVCESWKFR  242 (372)
Q Consensus       233 l~v~~~~~~~  242 (372)
                      -+++.+..++
T Consensus       221 ql~~As~dd~  230 (1049)
T KOG0307|consen  221 QLLVASGDDS  230 (1049)
T ss_pred             eeeeecCCCC
Confidence            6666665554

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=82.83  E-value=5.7  Score=36.62  Aligned_cols=55  Identities=15%  Similarity=0.107  Sum_probs=29.2

Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcC-CCCEEEEEe
Q 017371          220 FANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAP-DGTFWIAII  283 (372)
Q Consensus       220 ~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~-~G~lwva~~  283 (372)
                      .-|-+.++  .+ ++|+.+++..|..++..+.      .|...+.|.-.||+.-. .|++-|+..
T Consensus       322 aVNvVdfd--~k-yIVsASgDRTikvW~~st~------efvRtl~gHkRGIAClQYr~rlvVSGS  377 (499)
T KOG0281|consen  322 AVNVVDFD--DK-YIVSASGDRTIKVWSTSTC------EFVRTLNGHKRGIACLQYRDRLVVSGS  377 (499)
T ss_pred             heeeeccc--cc-eEEEecCCceEEEEeccce------eeehhhhcccccceehhccCeEEEecC
Confidence            34556565  33 6666666655655554332      34444555566776543 445555543

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=82.46  E-value=53  Score=32.40  Aligned_cols=82  Identities=12%  Similarity=0.099  Sum_probs=48.2

Q ss_pred             cEEEEecCCeEEEEe-CCceEEEEe-cCCCcccCeEEcCCCCEEEEeCCCcEEEEc-CCC-cEEEeeecCCcccccccce
Q 017371           91 VIYTATRDGWIKRLQ-DGTWVNWKF-IDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENFLSYVNGSKLRFANDV  166 (372)
Q Consensus        91 ~l~v~~~~g~i~~~~-~g~~~~~~~-~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~-~~g-~~~l~~~~~~~~~~~~~~l  166 (372)
                      .+.+.+.||++..+. .|+++.-.. -.+-.. .=.+.+||.=.++....|+.++- ++| ++.......    ..+..+
T Consensus        77 ~~~i~s~DGkf~il~k~~rVE~sv~AH~~A~~-~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~----~~v~c~  151 (737)
T KOG1524|consen   77 TLLICSNDGRFVILNKSARVERSISAHAAAIS-SGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNE----ESIRCA  151 (737)
T ss_pred             eEEEEcCCceEEEecccchhhhhhhhhhhhhh-hcccCCCCceeeeecCCceEEEEeccchHHHHHhhcC----ceeEEE
Confidence            566777899888888 777664322 122223 44566888766665567777766 777 432211111    245567


Q ss_pred             EEccCC-cEEEE
Q 017371          167 VEASDG-SLYFT  177 (372)
Q Consensus       167 ~~d~dG-~i~vt  177 (372)
                      +.+|+. ++.++
T Consensus       152 ~W~p~S~~vl~c  163 (737)
T KOG1524|consen  152 RWAPNSNSIVFC  163 (737)
T ss_pred             EECCCCCceEEe
Confidence            777764 56665

>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller

Probab=82.40  E-value=1.1  Score=27.02  Aligned_cols=18  Identities=28%  Similarity=0.593  Sum_probs=15.5

Q ss_pred             ccccceEEccCCcEEEEe
Q 017371          161 RFANDVVEASDGSLYFTV  178 (372)
Q Consensus       161 ~~~~~l~~d~dG~i~vtd  178 (372)
                      ..+++|++|++|+||++=
T Consensus        13 ~~~~~IavD~~GNiYv~G   30 (38)
T PF06739_consen   13 DYGNGIAVDSNGNIYVTG   30 (38)
T ss_pred             eeEEEEEECCCCCEEEEE
Confidence            357899999999999973

SBBP stands for Seven Bladed Beta Propeller.

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=81.70  E-value=12  Score=35.02  Aligned_cols=51  Identities=16%  Similarity=0.262  Sum_probs=31.3

Q ss_pred             CeEEEEeC---CCCeEEEEeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccC
Q 017371          199 GQLLKYDP---SSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKG  250 (372)
Q Consensus       199 g~v~~~d~---~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g  250 (372)
                      |-+|.+|.   ..+..+.++..+..-..+++++|+++++.+|. ...|+..+..+
T Consensus       129 gD~~~~di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDR-DEkIRvs~ypa  182 (390)
T KOG3914|consen  129 GDVYSFDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITADR-DEKIRVSRYPA  182 (390)
T ss_pred             CCceeeeeecccccCcchhhhhhhhhheeeecCCCCEEEEecC-CceEEEEecCc
Confidence            44555543   21444444445555668999999998888875 44566655543

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=80.95  E-value=52  Score=31.27  Aligned_cols=84  Identities=17%  Similarity=0.051  Sum_probs=47.8

Q ss_pred             CCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeecc-C-C-CCCCceeEEcC
Q 017371          198 HGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAE-N-L-PGAPDNINLAP  274 (372)
Q Consensus       198 ~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~-~-~-~g~p~~i~~d~  274 (372)
                      +..|..+|..+............-..+.++.+|..+..+ +..+.+-.+++.+....  ..|.. . . ..--.-..+.|
T Consensus       321 DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLss-sRDdtl~viDlRt~eI~--~~~sA~g~k~asDwtrvvfSp  397 (459)
T KOG0288|consen  321 DKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSS-SRDDTLKVIDLRTKEIR--QTFSAEGFKCASDWTRVVFSP  397 (459)
T ss_pred             ccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeee-cCCCceeeeecccccEE--EEeeccccccccccceeEECC
Confidence            455777775544444433333445678888999888877 45667888887653211  12210 0 0 00123467788


Q ss_pred             CCCEEEEEec
Q 017371          275 DGTFWIAIIK  284 (372)
Q Consensus       275 ~G~lwva~~~  284 (372)
                      +|.+-.+...
T Consensus       398 d~~YvaAGS~  407 (459)
T KOG0288|consen  398 DGSYVAAGSA  407 (459)
T ss_pred             CCceeeeccC
Confidence            8876666555

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	372
2fp8_A	322	Structure Of Strictosidine Synthase, The Biosynthet		6e-11
2v91_A	302	Structure Of Strictosidine Synthase In Complex With		1e-10
2fpb_A	322	Structure Of Strictosidine Synthase, The Biosynthet		6e-10

>pdb|2FP8|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic Entry To The Monoterpenoid Indole Alkaloid Family Length = 322

Iteration: 1
 Score = 65.1 bits (157), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 102/246 (41%), Gaps = 20/246 (8%)
Query: 50  SPVLDEVPQPAVLSATQLQDFIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQDGTW 109
           SP+L E+   A   A     F    +G     +D  + K    Y     G++       +
Sbjct: 6   SPILKEILIEAPSYAPNSFTFDSTNKGFYTSVQDGRVIK----YEGPNSGFVDFAYASPY 61
Query: 110 VNWKFIDSQT------LVGLT-----STKEGHLIICDNANGLHKVSEDG--VENFLSYVN 156
            N  F ++ T      L G T     + +   L I D    L  V  +G       + V+
Sbjct: 62  WNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVD 121
Query: 157 GSKLRFANDV-VEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA 215
           G   ++   V V+   G +YFT  S+ Y        +      G+L+KYDPS+  TTL+ 
Sbjct: 122 GVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLL 181
Query: 216 DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPD 275
              +   G  +S D  +V+V E    +  KYWL+G +KG  E   + +P  P NI    D
Sbjct: 182 KELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNAD 239
Query: 276 GTFWIA 281
           G FW++
Sbjct: 240 GHFWVS 245

>pdb|2V91|A Chain A, Structure Of Strictosidine Synthase In Complex With Strictosidine Length = 302

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 96/233 (41%), Gaps = 35/233 (15%)
Query: 82  EDASMDKNGVIYTATRDGWIKRLQDGTWVNWK-----FID-------------------- 116
           E  S   N   + +T  G+   +QDG  + ++     F+D                    
Sbjct: 6   EAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAE 65
Query: 117 SQTLVGLT-----STKEGHLIICDNANGLHKVSEDG--VENFLSYVNGSKLRFANDV-VE 168
            + L G T     + +   L I D    L  V  +G       + V+G   ++   V V+
Sbjct: 66  KRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVD 125
Query: 169 ASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSR 228
              G +YFT  S+ Y        +      G+L+KYDPS+  TTL+    +   G  +S 
Sbjct: 126 QRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSA 185
Query: 229 DEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIA 281
           D  +V+V E    +  KYWL+G +KG  E   + +P  P NI    DG FW++
Sbjct: 186 DSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGHFWVS 236

>pdb|2FPB|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic Entry To The Monoterpenoid Indole Alkaloid Family Length = 322

Iteration: 1
 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 56/116 (48%), Gaps = 2/116 (1%)
Query: 166 VVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVA 225
            V+   G +YFT  S+ Y               G+L KYDPS+  TTL+    +   G  
Sbjct: 132 TVDQRTGIVYFTDVSTLYDDRGVQQIXDTSDKTGRLXKYDPSTKETTLLXKELHVPGGAE 191
Query: 226 LSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIA 281
           +S D  +V+V E    +  KYWL+G +KG  E   + +P  P NI    DG FW++
Sbjct: 192 VSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGHFWVS 245

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	372
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	8e-70
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	4e-32
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	1e-22
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	6e-18
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	3e-16
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	3e-15
2p4o_A	306	Hypothetical protein; putative lactonase, structur	9e-13
2p4o_A	306	Hypothetical protein; putative lactonase, structur	9e-07
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	2e-12
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	3e-09
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	3e-07
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	4e-11
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	6e-11
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	9e-07
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	6e-09
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	3e-07
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	4e-07
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	6e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* Length = 322

 Score =  221 bits (563), Expect = 8e-70
 Identities = 66/327 (20%), Positives = 114/327 (34%), Gaps = 52/327 (15%)

Query: 72  KVGEGSVNHPEDASMDKNG-VIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLV------- 121
            + E     P   + D      YT+ +DG + + +  +  +V++ +              
Sbjct: 12  ILIEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENST 71

Query: 122 ------------GLT-STKEGHLIICDNANGLHKVSEDG--VENFLSYVNGSKLRFANDV 166
                        ++ + +   L I D    L  V  +G       + V+G   ++   V
Sbjct: 72  DAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAV 131

Query: 167 -VEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVA 225
            V+   G +YFT  S+ Y        +      G+L+KYDPS+  TTL+    +   G  
Sbjct: 132 TVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAE 191

Query: 226 LSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKL 285
           +S D  +V+V E    +  KYWL+G +KG  E     +P  P NI    DG FW++    
Sbjct: 192 VSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLV-KIPN-PGNIKRNADGHFWVSS--- 246

Query: 286 DARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSF 345
                                 +     +        I   E G I+  +  P       
Sbjct: 247 ---------------------SEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEH 285

Query: 346 VTSGLQVDNHLYVISLTSNFIGKVQLS 372
                + D  LY+ +L    +G +   
Sbjct: 286 FEQIQEHDGLLYIGTLFHGSVGILVYD 312

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* Length = 355

 Score =  122 bits (308), Expect = 4e-32
 Identities = 52/369 (14%), Positives = 103/369 (27%), Gaps = 56/369 (15%)

Query: 32  LLVCLIAFLLQIVYFSPISPVLDEVPQPAVLSATQLQDFIKVGEGSVNHPEDASMDKNGV 91
             + L+   L +      S           ++  +L +   V +G  N  ED  +  NG+
Sbjct: 5   TALTLLGMGLALFDR-QKSSFQTRFNVHREVTPVELPNCNLV-KGIDNGSEDLEILPNGL 62

Query: 92  IYTATRDGWIK---------------------------RLQDGTWVNWKFIDSQTLVGLT 124
            + ++   +                              +   T     F        + 
Sbjct: 63  AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFID 122

Query: 125 STKEGHLIICDNANG------LHKVSEDGVENFLSYVNGSKLRFANDVVEASDGSLYFTV 178
                +L++ ++              E+     L  +    L   ND+V       Y T 
Sbjct: 123 DDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATN 182

Query: 179 SSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES 238
                 P+    ++  G     +  Y P+     +VA+GF FANG+ +S D  YV + E 
Sbjct: 183 DHYFIDPYLKSWEMHLGLAWSFVTYYSPND--VRVVAEGFDFANGINISPDGKYVYIAEL 240

Query: 239 WKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAP-DGTFWIAIIKLDARRMKILNSSK 297
              +   Y               +     DNI++ P  G  W+       R       + 
Sbjct: 241 LAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAENP 299

Query: 298 LIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLY 357
               VL                  +  +  +   +  +    G ++   T        L 
Sbjct: 300 PGSEVL-----------------RIQDILSEEPKVTVVYAENGTVLQGSTVAAVYKGKLL 342

Query: 358 VISLTSNFI 366
           + ++    +
Sbjct: 343 IGTVFHKAL 351

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... Length = 314

 Score = 96.0 bits (239), Expect = 1e-22
 Identities = 45/245 (18%), Positives = 78/245 (31%), Gaps = 24/245 (9%)

Query: 55  EVPQPAVLSATQLQDFIKVGEGSVNHPE-DASMDKNGVIYTATRDGWIKRL--QDGTWVN 111
            V +P     T++ + I   EG V     D  +    V       G I R+  + G    
Sbjct: 4   PVIEPLF---TKVTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTV 60

Query: 112 WKFIDSQTLV----GLTSTKEGHLIIC-DNANGLHKVSEDG--VENFLSYVNGSKLRFAN 164
               +         G    ++ + +   D   GL  V  DG   E       G +++  N
Sbjct: 61  ICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCN 120

Query: 165 DVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGV 224
           D     +G+L+ T  +               +  G +  +     +   V   F F NG+
Sbjct: 121 DCAFDYEGNLWIT--APAGEVAPADYTRSMQEKFGSIYCFTTDGQM-IQVDTAFQFPNGI 177

Query: 225 ALSRDED----YVVVCESWKFRCRKYWLKGE----RKGKLETFAENLPGAPDNINLAPDG 276
           A+    D     ++V E+   +   Y +KG      K           G  D ++   D 
Sbjct: 178 AVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDN 237

Query: 277 TFWIA 281
              +A
Sbjct: 238 NLLVA 242

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} Length = 305

 Score = 82.5 bits (204), Expect = 6e-18
 Identities = 39/248 (15%), Positives = 72/248 (29%), Gaps = 16/248 (6%)

Query: 44  VYFSPISPVLDEVPQPAVL---SATQLQDFIKVGEGSVNHPEDASMDKNGVIYTATRDGW 100
           V      P +      A L       L D     EG              ++++      
Sbjct: 14  VPADCDPPRITHAALAARLGDARLLTLYDQATWSEGPAWWEAQ-----RTLVWSDLVGRR 68

Query: 101 IKRLQDGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLH-KVSEDG-VENFLSYVNGS 158
           +   ++   V+     +    G     +  L+ C++      +   DG     +    G 
Sbjct: 69  VLGWREDGTVDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDADGQAHLLVGRYAGK 128

Query: 159 KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF 218
           +L   ND++ A DG+++FT                    H  + +  P  +         
Sbjct: 129 RLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSP-LQRMADL 187

Query: 219 YFANGVALSRDEDYVVVCES-----WKFRCRKYWLKGERKGKLETFAENLPGAPDNINLA 273
              NG+A S DE  + V ++            +  +         FA    G PD   + 
Sbjct: 188 DHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVD 247

Query: 274 PDGTFWIA 281
             G  W +
Sbjct: 248 RGGWLWSS 255

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A Length = 333

 Score = 77.9 bits (192), Expect = 3e-16
 Identities = 38/204 (18%), Positives = 62/204 (30%), Gaps = 28/204 (13%)

Query: 88  KNGVIYTATRDGWIKRLQDGTWVNWKFIDSQTLVGLTSTKEGHLIICDNA-----NGLHK 142
             G I+    +                        +   K+G L +C         G+  
Sbjct: 64  FEGNIFKINPET-------KEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFA 116

Query: 143 VSEDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLL 202
            +E+G        + S     +D+V  S G  YFT                   P G + 
Sbjct: 117 ATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFT-----------DFRGYSTNPLGGVY 165

Query: 203 KYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLK-----GERKGKLE 257
              P     T +      ANG+ALS DE  + V E+   R  +  L+      +  G   
Sbjct: 166 YVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATI 225

Query: 258 TFAENLPGAPDNINLAPDGTFWIA 281
            +       PD+  +  D   ++A
Sbjct: 226 PYYFTGHEGPDSCCIDSDDNLYVA 249

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Length = 296

 Score = 74.7 bits (184), Expect = 3e-15
 Identities = 49/230 (21%), Positives = 78/230 (33%), Gaps = 25/230 (10%)

Query: 63  SATQLQDFIKVGEGSVNHPEDASM---D-KNGVIYTATRDG-WIKRLQDGTWVNWKFIDS 117
            A +L D     EG V  P  +++   D +    +  + DG     +      N      
Sbjct: 19  EARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQLSPEMHPSHHQN------ 72

Query: 118 QTLVGLTSTKEGHLIICDNANG-LHKVSEDG--VENFLSYVNGSKLRFANDVVEASDGSL 174
               G    K+GHLI C +    L +  E G   E+      G KL   NDV  A DGSL
Sbjct: 73  ----GHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSL 128

Query: 175 YFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVV 234
           +F+  +      E         P   + +  P   + +         NG+A     + +V
Sbjct: 129 WFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTL-SAPIRDRVKPNGLAFLPSGNLLV 187

Query: 235 VCESWKFRCRKYWLKGERKGKL---ETFAENLPGAPDNINLAPDGTFWIA 281
             ++      +Y L     G+           PG  D + +   G  W +
Sbjct: 188 S-DTGDNATHRYCLNAR--GETEYQGVHFTVEPGKTDGLRVDAGGLIWAS 234

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Length = 306

 Score = 67.3 bits (164), Expect = 9e-13
 Identities = 37/206 (17%), Positives = 66/206 (32%), Gaps = 16/206 (7%)

Query: 81  PEDASMDKNGVIY-TATRDGWIKRL-QDGTWVNWKFIDSQTLVGLTSTKEGHLIICDNAN 138
            E+ +   +G I+ T    G I  +  DG       ++ +   GL  T  G L+      
Sbjct: 34  LENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVS-GLAFTSNGDLVATGWNA 92

Query: 139 G-LHKVSEDGVENFLS-YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGK 196
             +  VS    +  +   +      F N +   SD       S    +       I   +
Sbjct: 93  DSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWL-----IDVVQ 147

Query: 197 PHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERK-GK 255
           P G +    P    +   +    F     L R  +++ V  + K    +  +    K G+
Sbjct: 148 PSGSIWLEHPMLARSNSESV---FPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGE 204

Query: 256 LETFAENLPGAPDNINLAPDGTFWIA 281
            E F E      D+     +G  + A
Sbjct: 205 PEIFVE--QTNIDDFAFDVEGNLYGA 228

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Length = 306

 Score = 49.2 bits (117), Expect = 9e-07
 Identities = 33/226 (14%), Positives = 65/226 (28%), Gaps = 38/226 (16%)

Query: 162 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA 221
           F  ++  A DG+++ T             +       G+++   P  N     A      
Sbjct: 33  FLENLASAPDGTIFVT-------------NH----EVGEIVSITPDGNQQI-HATVEGKV 74

Query: 222 NGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDN-INLAPDGTFWI 280
           +G+A + + D V     W           +  G +ET          N I    D  +  
Sbjct: 75  SGLAFTSNGDLVAT--GWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLT 132

Query: 281 A--------IIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTII 332
           A        +I +      I     ++    +      +  +   G    +   E   ++
Sbjct: 133 ADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLL 192

Query: 333 RNLVDPTGQLMSFVTS-------GLQVD--NHLYVISLTSNFIGKV 369
           R  VD T +                  D   +LY  +   N + ++
Sbjct: 193 RIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRI 238

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 66.2 bits (162), Expect = 2e-12
 Identities = 41/277 (14%), Positives = 86/277 (31%), Gaps = 37/277 (13%)

Query: 74  GEGSVNHPEDASMDKNGVIY-TATRDGWIKRL-QDGTWVNWKFIDSQTL-VGLTSTKEGH 130
                      ++  +G ++ T      I R+ + G    +   +  +   G+T    G 
Sbjct: 52  LPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGD 111

Query: 131 LIICDNANG-LHKVSEDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYC 189
           +   +     + ++++DG      Y   +K  + + +   SD +L+FT + +        
Sbjct: 112 IWFTEMNGNRIGRITDDG--KIREYELPNKGSYPSFITLGSDNALWFTENQN-------- 161

Query: 190 LDILEGKPHGQLLKYDPSSNITTL-VADGFYFANGVALSRDEDYVVVCESWKFRCRKYWL 248
                      + +   S +IT   +        G+    D D +   E    +  +   
Sbjct: 162 ---------NAIGRITESGDITEFKIPTPASGPVGITKGND-DALWFVEIIGNKIGRI-- 209

Query: 249 KGERKGKLETFAENLPGA-PDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYP 307
                G++  F    P A P  I        W    +  A ++  L S+ +I+       
Sbjct: 210 --TTSGEITEFKIPTPNARPHAITAGAGIDLWFT--EWGANKIGRLTSNNIIEEYPIQIK 265

Query: 308 KLFSQFITLGGGAHLIHVAED-GTIIRNLVDPTGQLM 343
                 I   G    I  A +   I +  +      M
Sbjct: 266 SAEPHGICFDGET--IWFAMECDKIGK--LTLIKDNM 298

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 56.6 bits (137), Expect = 3e-09
 Identities = 40/263 (15%), Positives = 80/263 (30%), Gaps = 45/263 (17%)

Query: 122 GLTSTKEGHLIICDNANG-LHKVSEDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSS 180
           G+T + +G + I  +    +  ++ DG      Y   +       +  +SDG ++FT ++
Sbjct: 19  GITVSDKGKVWITQHKANMISCINLDG--KITEYPLPTPDAKVMCLTISSDGEVWFTENA 76

Query: 181 SKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VADGFYFANGVALSRDEDYVVVCESW 239
           +                  ++ +      I    + +      G+    +   +   E  
Sbjct: 77  A-----------------NKIGRITKKGIIKEYTLPNPDSAPYGITEGPN-GDIWFTEMN 118

Query: 240 KFRCRKYWLKGERKGKLETFAENLPGA-PDNINLAPDGTFWIAIIKLDARRMKILNSSKL 298
             R  +        GK+  +     G+ P  I L  D   W          +  +  S  
Sbjct: 119 GNRIGRI----TDDGKIREYELPNKGSYPSFITLGSDNALWFTE--NQNNAIGRITESGD 172

Query: 299 IKHVLAAYPKLFSQFITLGG-GAHLIHVAE--DGTIIRNLVDPTGQLMSFVT-------S 348
           I       P      IT G   A  +   E     I R  +  +G++  F          
Sbjct: 173 ITEFKIPTPASGPVGITKGNDDA--LWFVEIIGNKIGR--ITTSGEITEFKIPTPNARPH 228

Query: 349 GLQVD--NHLYVISLTSNFIGKV 369
            +       L+     +N IG++
Sbjct: 229 AITAGAGIDLWFTEWGANKIGRL 251

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 34/220 (15%), Positives = 72/220 (32%), Gaps = 42/220 (19%)

Query: 164 NDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VADGFYFAN 222
             +  +  G ++ T   +                   +   +    IT   +        
Sbjct: 18  YGITVSDKGKVWITQHKA-----------------NMISCINLDGKITEYPLPTPDAKVM 60

Query: 223 GVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGA-PDNINLAPDGTFWIA 281
            + +S D   V   E+   +  +      +KG ++ +    P + P  I   P+G  W  
Sbjct: 61  CLTISSD-GEVWFTENAANKIGRI----TKKGIIKEYTLPNPDSAPYGITEGPNGDIWFT 115

Query: 282 IIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGG-GAHLIHVAE--DGTIIRNLVDP 338
             +++  R+  +     I+         +  FITLG   A  +   E  +  I R  +  
Sbjct: 116 --EMNGNRIGRITDDGKIREYELPNKGSYPSFITLGSDNA--LWFTENQNNAIGR--ITE 169

Query: 339 TGQLMSFVTS-------GLQVD--NHLYVISLTSNFIGKV 369
           +G +  F          G+     + L+ + +  N IG++
Sbjct: 170 SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRI 209

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 62.3 bits (152), Expect = 4e-11
 Identities = 35/274 (12%), Positives = 80/274 (29%), Gaps = 67/274 (24%)

Query: 122 GLTSTKEGHLIICDNANG-LHKVSEDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSS 180
           G+TS+++G +    +    +  + + G      +   +       ++ +S G ++FT + 
Sbjct: 24  GITSSEDGKVWFTQHKANKISSLDQSG--RIKEFEVPTPDAKVMCLIVSSLGDIWFTENG 81

Query: 181 SKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VADGFYFANGVALSRDEDYVVVCESW 239
           +                  ++ K       T   +        G+    +   +   +  
Sbjct: 82  A-----------------NKIGKLSKKGGFTEYPLPQPDSGPYGITEGLN-GDIWFTQLN 123

Query: 240 KFRCRKYWLKGERKGKLETFAENLPGA-PDNINLAPDGTFWIA------IIKLDARRMKI 292
             R  K        G +  +     G+ P  I L  D   W        I ++       
Sbjct: 124 GDRIGKLT----ADGTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN----- 174

Query: 293 LNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTII-----RNLV---DPTGQLMS 344
             + KL ++ L           T       I    DG +       N +     TG++  
Sbjct: 175 --TGKLEEYPLP----------TNAAAPVGITSGNDGALWFVEIMGNKIGRITTTGEISE 222

Query: 345 FVT-------SGLQVD--NHLYVISLTSNFIGKV 369
           +           +     + ++     +N IG++
Sbjct: 223 YDIPTPNARPHAITAGKNSEIWFTEWGANQIGRI 256

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 61.6 bits (150), Expect = 6e-11
 Identities = 29/214 (13%), Positives = 65/214 (30%), Gaps = 30/214 (14%)

Query: 74  GEGSVNHPEDASMDKNGVIY-TATRDGWIKRL-QDGTWVNWKFIDSQTL-VGLTSTKEGH 130
                + P   +   NG I+ T      I +L  DGT   +   +  +    +T   +  
Sbjct: 99  LPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADGTIYEYDLPNKGSYPAFITLGSDNA 158

Query: 131 LIICDNANG-LHKVSEDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYC 189
           L   +N N  + +++  G      Y   +       +   +DG+L+F             
Sbjct: 159 LWFTENQNNSIGRITNTG--KLEEYPLPTNAAAPVGITSGNDGALWFVEIMG-------- 208

Query: 190 LDILEGKPHGQLLKYDPSSNITTL-VADGFYFANGVALSRDEDYVVVCESWKFRCRKYWL 248
                     ++ +   +  I+   +       + +   ++   +   E    +  +   
Sbjct: 209 ---------NKIGRITTTGEISEYDIPTPNARPHAITAGKN-SEIWFTEWGANQIGRI-- 256

Query: 249 KGERKGKLETFAENLPGA-PDNINLAPDGTFWIA 281
                  ++ +      A P  I    DG+ W A
Sbjct: 257 --TNDNTIQEYQLQTENAEPHGITFGKDGSVWFA 288

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 48.8 bits (117), Expect = 9e-07
 Identities = 39/218 (17%), Positives = 72/218 (33%), Gaps = 38/218 (17%)

Query: 164 NDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VADGFYFAN 222
             +  + DG ++FT   +                  ++   D S  I    V        
Sbjct: 23  YGITSSEDGKVWFTQHKA-----------------NKISSLDQSGRIKEFEVPTPDAKVM 65

Query: 223 GVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGA-PDNINLAPDGTFWIA 281
            + +S     +   E+   +  K      +KG    +    P + P  I    +G  W  
Sbjct: 66  CLIVSSL-GDIWFTENGANKIGKL----SKKGGFTEYPLPQPDSGPYGITEGLNGDIWFT 120

Query: 282 IIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGG-GAHLIHVAEDGTIIRNLVDPTG 340
             +L+  R+  L +   I          +  FITLG   A      ++ +I R  +  TG
Sbjct: 121 --QLNGDRIGKLTADGTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGR--ITNTG 176

Query: 341 QLMSFVTS-------GLQVDN--HLYVISLTSNFIGKV 369
           +L  +          G+   N   L+ + +  N IG++
Sbjct: 177 KLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRI 214

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270

 Score = 55.3 bits (134), Expect = 6e-09
 Identities = 30/182 (16%), Positives = 62/182 (34%), Gaps = 29/182 (15%)

Query: 72  KVGEGSVNHPEDASMDKNGVIYTA-TRDGWIKRL-QDGTWVNWKFIDSQTL---VGLTST 126
            +    +N+PE  ++D  G +Y A   +  + +L           +    L    G+   
Sbjct: 101 VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ--TVLPFTGLNDPDGVAVD 158

Query: 127 KEGHLIICDNANG-LHKVSEDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLP 185
             G++ + D  N  + K+  +   N    +  + +     +     G++Y T  ++    
Sbjct: 159 NSGNVYVTDTDNNRVVKLEAES--NNQVVLPFTDITAPWGIAVDEAGTVYVTEHNT---- 212

Query: 186 HEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDEDYVVVCESWKFRCR 244
                         Q++K    S  +T++   G      VA+  D   V V +    R  
Sbjct: 213 -------------NQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSD-RTVYVADRGNDRVV 258

Query: 245 KY 246
           K 
Sbjct: 259 KL 260

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270

 Score = 50.3 bits (121), Expect = 3e-07
 Identities = 33/213 (15%), Positives = 70/213 (32%), Gaps = 27/213 (12%)

Query: 73  VGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQDGTWVNWKFIDSQ--TLVGLTSTKEGH 130
           +    +  P+  ++D  G +Y    +  +  L  G+               GL    +G 
Sbjct: 61  LPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGA 120

Query: 131 LIICDNANG-LHKVSEDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYC 189
           + + D  N  + K++        + +  + L   + V   + G++Y T +          
Sbjct: 121 VYVADRGNNRVVKLAAGS--KTQTVLPFTGLNDPDGVAVDNSGNVYVTDTD--------- 169

Query: 190 LDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSRDEDYVVVCESWKFRCRKYWL 248
                   + +++K +  SN   ++         G+A+      V V E    +  K   
Sbjct: 170 --------NNRVVKLEAESNNQVVLPFTDITAPWGIAVDEA-GTVYVTEHNTNQVVKLLA 220

Query: 249 KGERKGKLETFAENLPGAPDNINLAPDGTFWIA 281
                  L     N P A   + +  D T ++A
Sbjct: 221 GSTTSTVLPFTGLNTPLA---VAVDSDRTVYVA 250

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270

 Score = 49.9 bits (120), Expect = 4e-07
 Identities = 37/225 (16%), Positives = 72/225 (32%), Gaps = 34/225 (15%)

Query: 74  GEGSVNHPEDASMDKNGVIYTATRD--GWIKRLQDGTWVNWKFIDSQ--TLVGLTSTKEG 129
           G      P   ++D  G +Y  +    G + +L  G+        +      GL     G
Sbjct: 19  GIDFRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAG 78

Query: 130 HLIICDNANGLHKVSEDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYC 189
            + + D  N    V+     N  + +    L +   +   + G++Y              
Sbjct: 79  TVYVTDFNN--RVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVA------------ 124

Query: 190 LDILEGKPHGQLLKYDPSSNITTLVAD-GFYFANGVALSRDEDYVVVCESWKFRCRKYWL 248
                 + + +++K    S   T++   G    +GVA+      V V ++   R  K   
Sbjct: 125 -----DRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNS-GNVYVTDTDNNRVVKLEA 178

Query: 249 KGERKGKLETFAENLPGAPDNINLAPDGTFWIA------IIKLDA 287
           +                AP  I +   GT ++       ++KL A
Sbjct: 179 ESNN---QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLA 220

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Length = 286

 Score = 43.3 bits (103), Expect = 6e-05
 Identities = 25/177 (14%), Positives = 64/177 (36%), Gaps = 33/177 (18%)

Query: 74  GEGSVNHPEDASMDKNGVIYTATRDGWIKRLQ----DGTWVNWKFIDSQTLV---GLTST 126
            +  + +P   ++ +N      T      ++Q     G +V  +   +  L    G+T  
Sbjct: 72  RDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFV--RKFGATILQHPRGVTVD 129

Query: 127 KEGHLIICDNANG-LHKVSEDGVENFLSYVNGSK-LRFANDVVEASDGSLYFTVSSSKYL 184
            +G +I+ +     +    ++G  N L     SK L F N VV      ++  +S ++  
Sbjct: 130 NKGRIIVVECKVMRVIIFDQNG--NVLHKFGCSKHLEFPNGVVVNDKQEIF--ISDNR-- 183

Query: 185 PHEYCLDILEGKPHGQLLKYDPSSN-ITTLVADG-FYFANGVALSRDEDYVVVCESW 239
                           +  ++     +  +  +G   +  GV ++ +   +++ ++ 
Sbjct: 184 -------------AHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSN-GEILIADNH 226

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 5e-04
 Identities = 51/295 (17%), Positives = 100/295 (33%), Gaps = 84/295 (28%)

Query: 102 KRLQDG--TWVNWKFID--------SQTLVGLTSTKEGHL-----IICDNANGLHKV--- 143
           + ++DG  TW NWK ++          +L  L   +   +     +   +A+    +   
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL 394

Query: 144 -----SEDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDI---LEG 195
                 +  V   ++     KL   + V +    S          +P  Y L++   LE 
Sbjct: 395 IWFDVIKSDVMVVVN-----KLHKYSLVEKQPKESTI-------SIPSIY-LELKVKLEN 441

Query: 196 KP--HGQLL-KYD-----PSSNITTLVADGFYFANGVA--LSRDEDYVVVCESWK-FRCR 244
           +   H  ++  Y+      S ++     D  YF + +   L   E      E    FR  
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQ-YFYSHIGHHLKNIEHP----ERMTLFR-M 495

Query: 245 KY----WLKGERKGKLETFAENLPGAPDNINLAPDGTFWIA-IIKLDARRMKILNSSKLI 299
            +    +L  E+K + ++ A N  G    +N      F+   I   D +  +++N+   I
Sbjct: 496 VFLDFRFL--EQKIRHDSTAWNASG--SILNTLQQLKFYKPYICDNDPKYERLVNA---I 548

Query: 300 KHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIR-NLVDPTGQLMSFVTSGLQVD 353
              L                 +LI  ++   ++R  L+     +  F  +  QV 
Sbjct: 549 LDFLPKI------------EENLIC-SKYTDLLRIALMAEDEAI--FEEAHKQVQ 588

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	372
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	100.0
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	99.97
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.96
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.94
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.94
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.94
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.92
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.92
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.9
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.9
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.9
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.9
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.9
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.9
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.89
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.88
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.88
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.88
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.87
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.86
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	99.84
3kya_A	496	Putative phosphatase; structural genomics, joint c	99.84
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.83
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.82
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.81
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	99.81
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.81
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.8
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.8
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.8
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.79
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.79
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.79
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.79
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.78
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.77
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.76
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.75
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.75
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.75
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.75
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.74
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.74
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	99.71
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.71
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	99.7
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.7
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.7
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.7
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.7
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.7
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.69
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.69
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.69
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	99.68
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.67
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.66
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.66
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.66
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.66
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.66
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.64
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.63
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.63
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.6
3kya_A	496	Putative phosphatase; structural genomics, joint c	99.6
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.59
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.58
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.57
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	99.56
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.56
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.56
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.56
3ott_A	758	Two-component system sensor histidine kinase; beta	99.55
3ott_A	758	Two-component system sensor histidine kinase; beta	99.54
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	99.53
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.53
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.51
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.5
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.5
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.5
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.48
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.48
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.48
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	99.46
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.46
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.44
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	99.43
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.43
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.42
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	99.41
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.4
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.39
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.37
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	99.33
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	99.32
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.31
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.31
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.31
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.3
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.27
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.26
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.26
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.22
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.22
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.2
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.19
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.18
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.18
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.17
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.17
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.15
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	99.13
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.12
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	99.12
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	99.12
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	99.12
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.11
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.08
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.07
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.06
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.05
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.03
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.02
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.02
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.97
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.96
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	98.95
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.93
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.93
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	98.93
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.91
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	98.91
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	98.89
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.88
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	98.87
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	98.87
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.87
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.86
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	98.82
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	98.81
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	98.81
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	98.81
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	98.8
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	98.8
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.79
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.79
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.79
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	98.78
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.78
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	98.76
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	98.75
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	98.75
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	98.75
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	98.74
3ow8_A	321	WD repeat-containing protein 61; structural genomi	98.73
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	98.73
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.71
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.71
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	98.7
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	98.7
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	98.68
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	98.67
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	98.66
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	98.65
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	98.65
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	98.64
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	98.64
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	98.63
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	98.63
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.62
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	98.62
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	98.6
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	98.6
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	98.6
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	98.59
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	98.59
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	98.58
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.56
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	98.56
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	98.56
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	98.56
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.54
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	98.53
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	98.53
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	98.49
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.48
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	98.48
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	98.47
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	98.47
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	98.46
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	98.45
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	98.44
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	98.44
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	98.42
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	98.42
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	98.42
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	98.4
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	98.4
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	98.4
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.4
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	98.4
3jrp_A	379	Fusion protein of protein transport protein SEC13	98.4
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	98.39
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	98.39
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	98.39
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	98.39
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	98.38
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	98.35
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	98.35
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	98.35
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	98.35
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	98.35
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	98.33
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	98.33
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	98.32
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	98.32
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	98.32
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	98.31
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	98.31
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	98.31
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.31
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	98.28
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	98.28
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	98.28
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	98.25
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	98.23
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	98.23
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.23
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.22
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	98.22
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	98.21
1k32_A	1045	Tricorn protease; protein degradation, substrate g	98.2
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.19
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	98.16
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.15
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	98.15
3jro_A	753	Fusion protein of protein transport protein SEC13	98.14
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	98.13
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	98.13
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	98.13
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	98.12
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	98.08
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	98.08
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.07
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	98.06
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	98.04
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	98.03
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	98.03
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	98.03
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.02
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	98.02
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	98.02
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	98.01
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	98.01
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	98.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	98.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	97.99
3jrp_A	379	Fusion protein of protein transport protein SEC13	97.98
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.97
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	97.97
1k32_A	1045	Tricorn protease; protein degradation, substrate g	97.96
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	97.92
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	97.9
2pm7_B	297	Protein transport protein SEC13, protein transport	97.87
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	97.85
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	97.84
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	97.84
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.82
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.82
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	97.78
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	97.77
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.76
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.76
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	97.73
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.72
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	97.72
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	97.68
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	97.67
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.67
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.67
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.65
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	97.63
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.63
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.61
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.59
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	97.58
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.58
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	97.57
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	97.57
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	97.54
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	97.54
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	97.51
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	97.5
3jro_A	753	Fusion protein of protein transport protein SEC13	97.5
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	97.45
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.44
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	97.44
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	97.43
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	97.4
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.38
2pm7_B	297	Protein transport protein SEC13, protein transport	97.37
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	97.36
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.36
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	97.24
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	97.23
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	97.22
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	97.14
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	97.1
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	97.05
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	96.97
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	96.94
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	96.8
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	96.74
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	96.67
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	96.58
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	96.39
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	96.17
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	96.12
2cn3_A	737	Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc	95.91
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	95.41
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	95.38
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	95.08
1sqj_A	789	OXG-RCBH, oligoxyloglucan reducing-END-specific ce	95.07
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	94.59
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	94.58
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	94.57
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	94.38
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	94.0
3a0f_A	763	Xyloglucanase; beta-propeller, hydrolase; 2.50A {G	93.52
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	92.55
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	92.38
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	91.41
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	87.36
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	85.42
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	85.05
3s9j_A	369	Member of DUF4221 family; 6-bladed beta-propeller,	84.37
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	83.91
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	83.11
3a0f_A	763	Xyloglucanase; beta-propeller, hydrolase; 2.50A {G	82.5
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	81.74
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	80.85
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	80.52
1sqj_A	789	OXG-RCBH, oligoxyloglucan reducing-END-specific ce	80.35

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=100.00  E-value=2.5e-33  Score=259.62  Aligned_cols=270  Identities=24%  Similarity=0.386  Sum_probs=217.9

Q ss_pred             CCCCCCccEEEcCCCc-EEEEecCCeEEEEe-C-CceEEEEec--------------------CCCcccCeEEcC-CCCE
Q 017371           76 GSVNHPEDASMDKNGV-IYTATRDGWIKRLQ-D-GTWVNWKFI--------------------DSQTLVGLTSTK-EGHL  131 (372)
Q Consensus        76 g~~~~p~~i~~d~~G~-l~v~~~~g~i~~~~-~-g~~~~~~~~--------------------~~~p~~gl~~d~-dG~l  131 (372)
                      |.+..||++++|++|+ +|++..+++|++++ + ++++.+...                    .+.|. ||++++ +|+|
T Consensus        16 g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~-gi~~~~~~g~l   94 (322)
T 2fp8_A           16 APSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTY-DISYNLQNNQL   94 (322)
T ss_dssp             CSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEE-EEEEETTTTEE
T ss_pred             CccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCc-eEEEcCCCCcE
Confidence            5578999999999998 88888899999999 4 467666531                    24688 999997 8999


Q ss_pred             EEEeCCCcEEEEcCC-C-cEEEeeecCCcccccccceEEcc-CCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCC
Q 017371          132 IICDNANGLHKVSED-G-VENFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS  208 (372)
Q Consensus       132 ~v~~~~~gv~~~~~~-g-~~~l~~~~~~~~~~~~~~l~~d~-dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t  208 (372)
                      ||++...++++++.+ + .+.+.....+.++..++++++|+ +|+|||+|....|....+...+.+....++|+++|+++
T Consensus        95 ~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~  174 (322)
T 2fp8_A           95 YIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST  174 (322)
T ss_dssp             EEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT
T ss_pred             EEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCC
Confidence            999988889999954 5 67776555555667899999999 99999999865555444433444455678999999988


Q ss_pred             CeEEEEeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchh
Q 017371          209 NITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDAR  288 (372)
Q Consensus       209 ~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~  288 (372)
                      ++++.+...+..|+|+++++||+.+||+++.+++|++|++++...+..+.+.+ .++ |+++++|++|+|||++...++.
T Consensus       175 ~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-~~g-P~gi~~d~~G~l~va~~~~~~~  252 (322)
T 2fp8_A          175 KETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGHFWVSSSEELDG  252 (322)
T ss_dssp             TEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-CSS-EEEEEECTTSCEEEEEEEETTS
T ss_pred             CEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-CCC-CCCeEECCCCCEEEEecCcccc
Confidence            98888878889999999999999999999998999999998766566666654 567 9999999999999999763221


Q ss_pred             HHHHhhcchhHHHHHHhcCccccccccCCCceEEEEECCCCcEEEEEECCCCCeeccceeeEEECCEEEEEeCCCCeEEE
Q 017371          289 RMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGK  368 (372)
Q Consensus       289 ~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~igs~~~~~i~~  368 (372)
                      .                 |.       ....+.|++++++|+.+..+..++|..+..++++.+.+++||+++..+++|.+
T Consensus       253 ~-----------------~~-------~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~  308 (322)
T 2fp8_A          253 N-----------------MH-------GRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGI  308 (322)
T ss_dssp             S-----------------TT-------SCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEEETTEEEEECSSCSEEEE
T ss_pred             c-----------------cc-------CCCccEEEEECCCCCEEEEEECCCCCccccceEEEEeCCEEEEeecCCCceEE
Confidence            1                 00       11256899999999999999998876677788888889999999999999999


Q ss_pred             EeCC
Q 017371          369 VQLS  372 (372)
Q Consensus       369 ~~~~  372 (372)
                      ++++
T Consensus       309 ~~~~  312 (322)
T 2fp8_A          309 LVYD  312 (322)
T ss_dssp             EEC-
T ss_pred             Eecc
Confidence            9874

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=99.97  E-value=2.7e-28  Score=226.61  Aligned_cols=273  Identities=20%  Similarity=0.312  Sum_probs=202.6

Q ss_pred             CceEecCCCCCCCccEEEcCCCcEEEEe-------------cCCeEEEEe-C---CceEEEEecC-------CCcccCeE
Q 017371           69 DFIKVGEGSVNHPEDASMDKNGVIYTAT-------------RDGWIKRLQ-D---GTWVNWKFID-------SQTLVGLT  124 (372)
Q Consensus        69 ~~~~~~~g~~~~p~~i~~d~~G~l~v~~-------------~~g~i~~~~-~---g~~~~~~~~~-------~~p~~gl~  124 (372)
                      ..+.+. +...+||+|+++++|.+|+++             .+|+|++++ +   ++.+.+....       .+|+ ||.
T Consensus        41 ~C~~i~-~~~~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~Ph-Gi~  118 (355)
T 3sre_A           41 NCNLVK-GIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPH-GIS  118 (355)
T ss_dssp             CEEECT-TCCSCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEE-EEE
T ss_pred             CCEEeC-CCCCCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeee-eeE
Confidence            667774 434699999999999999997             689999999 4   3455544332       4899 999


Q ss_pred             EcC--CC--CEEEEeCCCc-----EEEEcCCC-cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCccc--cccc
Q 017371          125 STK--EG--HLIICDNANG-----LHKVSEDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEY--CLDI  192 (372)
Q Consensus       125 ~d~--dG--~l~v~~~~~g-----v~~~~~~g-~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~--~~~~  192 (372)
                      +.+  +|  +|||+++..+     +++++.++ ...+.....+.++..+|+++++++|++|++++.  |-.+..  ..+.
T Consensus       119 ~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~--~ftd~~~~~~e~  196 (355)
T 3sre_A          119 TFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDH--YFIDPYLKSWEM  196 (355)
T ss_dssp             EEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESC--SCSSHHHHHHHH
T ss_pred             EEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCc--EeCCcccccchh
Confidence            854  45  5999987643     88888655 666666677888899999999999999999863  111110  0111


Q ss_pred             ccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCC-CCcceeeeccCCCCCCceeE
Q 017371          193 LEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGE-RKGKLETFAENLPGAPDNIN  271 (372)
Q Consensus       193 ~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~-~~~~~~~~~~~~~g~p~~i~  271 (372)
                      ....+.|+||+||+  ++++.+.+++.+|||++++||++++|++++..++|++|+++.. +++..+.+  ..++.|||++
T Consensus       197 ~~~~~~g~vyr~d~--~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~--~~~g~PDGi~  272 (355)
T 3sre_A          197 HLGLAWSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL--SFDTLVDNIS  272 (355)
T ss_dssp             HTTCCCEEEEEECT--TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE--ECSSEEEEEE
T ss_pred             hccCCccEEEEEEC--CeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE--eCCCCCceEE
Confidence            23456789999998  4677888999999999999999999999999999999998742 34445555  3578899999


Q ss_pred             EcC-CCCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEEC----CCCcEEEEEECCCCCeeccc
Q 017371          272 LAP-DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVA----EDGTIIRNLVDPTGQLMSFV  346 (372)
Q Consensus       272 ~d~-~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~----~~g~~~~~~~~~~g~~~~~~  346 (372)
                      +|+ +|++|++......             ++...-|..       .....|.++.    .++++.+.|.+ +|+.++..
T Consensus       273 vD~e~G~lwva~~~~g~-------------~v~~~~P~~-------~~~s~v~rI~~~~~~~~~v~~v~~d-dG~~l~~~  331 (355)
T 3sre_A          273 VDPVTGDLWVGCHPNGM-------------RIFFYDAEN-------PPGSEVLRIQDILSEEPKVTVVYAE-NGTVLQGS  331 (355)
T ss_dssp             ECTTTCCEEEEEESCHH-------------HHHSCCTTS-------CCCEEEEEEECTTSSSCEEEEEEEE-CSSSCCSE
T ss_pred             EeCCCCcEEEEecCCce-------------EEEEECCCC-------CCCCEEEEEEccCCCCcEEEEEEEc-CCCEEEee
Confidence            999 5999998753211             111111221       1134566665    47888888988 79889999


Q ss_pred             eeeEEECCEEEEEeCCCCeEEEEeC
Q 017371          347 TSGLQVDNHLYVISLTSNFIGKVQL  371 (372)
Q Consensus       347 t~~~~~~g~L~igs~~~~~i~~~~~  371 (372)
                      |.+.+.+|+||||+...+ +..|+|
T Consensus       332 T~a~~~~g~L~iGsv~~~-~l~c~~  355 (355)
T 3sre_A          332 TVAAVYKGKLLIGTVFHK-ALYCDL  355 (355)
T ss_dssp             EEEEEETTEEEEEESSSC-EEEEEC
T ss_pred             EEEEEECCEEEEEEcCCC-ceeccC
Confidence            999999999999999888 556654

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.96  E-value=6.1e-27  Score=214.97  Aligned_cols=255  Identities=16%  Similarity=0.227  Sum_probs=199.2

Q ss_pred             CceEecCCCCCCCccEEEcCCCc-EEEEe-cCCeEEEEe-CCceEEEEecCCCcccCeEEcCCCCEEEEeCC-CcEEEEc
Q 017371           69 DFIKVGEGSVNHPEDASMDKNGV-IYTAT-RDGWIKRLQ-DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS  144 (372)
Q Consensus        69 ~~~~~~~g~~~~p~~i~~d~~G~-l~v~~-~~g~i~~~~-~g~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~-~gv~~~~  144 (372)
                      .++.+..+ +..+|+.+++++|+ ||+.+ .+++|++++ +|+.+.+....+.+. +++++++|+||+++.. .+|.+++
T Consensus        36 ~~~~l~~~-~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~~~~~~~~~~~~~-gl~~d~dG~l~v~~~~~~~v~~~~  113 (305)
T 3dr2_A           36 RLLTLYDQ-ATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGTVDVLLDATAFTN-GNAVDAQQRLVHCEHGRRAITRSD  113 (305)
T ss_dssp             CCEEEECC-CSSEEEEEEEGGGTEEEEEETTTTEEEEEETTSCEEEEEESCSCEE-EEEECTTSCEEEEETTTTEEEEEC
T ss_pred             ceEEEecC-CcCccCCeEeCCCCEEEEEECCCCEEEEEeCCCCEEEEeCCCCccc-eeeECCCCCEEEEECCCCEEEEEC
Confidence            56677777 57899999999887 66666 789999999 888888877778889 9999999999999876 6799999


Q ss_pred             CCC-cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccc--cccccccCCCeEEEEeCCCCeEEEEeCCccCc
Q 017371          145 EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYC--LDILEGKPHGQLLKYDPSSNITTLVADGFYFA  221 (372)
Q Consensus       145 ~~g-~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~--~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~  221 (372)
                      .+| .+.+.....+.++..+++++++++|+||+||..  |+.....  .........++|+++|+++++++.+. .+..|
T Consensus       114 ~~g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~--~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p  190 (305)
T 3dr2_A          114 ADGQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPP--FGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHP  190 (305)
T ss_dssp             TTSCEEEEECEETTEECSCCCCEEECTTSCEEEECCS--GGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSE
T ss_pred             CCCCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcC--CCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCC
Confidence            668 777766556666678999999999999999863  2111000  00011123578999999888888777 88899


Q ss_pred             ceEEEecCCCEEEEEeCCC-----CeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcc
Q 017371          222 NGVALSRDEDYVVVCESWK-----FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSS  296 (372)
Q Consensus       222 ~gi~~~~dg~~l~v~~~~~-----~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~  296 (372)
                      +|+++++|++.||++++..     ++|++|++++..+...+.+.+...+.|+++++|++|+||+++..            
T Consensus       191 ~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~~~------------  258 (305)
T 3dr2_A          191 NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSSGT------------  258 (305)
T ss_dssp             EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECCSS------------
T ss_pred             cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEecCC------------
Confidence            9999999999999999863     78999998764444445555445678999999999999999844            


Q ss_pred             hhHHHHHHhcCccccccccCCCceEEEEECCCCcEEEEEECCCCCeeccceeeEEE--CCEEEEEeCCCCeEEEEeC
Q 017371          297 KLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV--DNHLYVISLTSNFIGKVQL  371 (372)
Q Consensus       297 ~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~--~g~L~igs~~~~~i~~~~~  371 (372)
                                              +|.+|+++|+.+..+..+.+     ++.+++.  +++||+++.  +.|.++++
T Consensus       259 ------------------------gv~~~~~~g~~~~~~~~~~~-----~~~~~f~~d~~~L~it~~--~~l~~~~~  304 (305)
T 3dr2_A          259 ------------------------GVCVFDSDGQLLGHIPTPGT-----ASNCTFDQAQQRLFITGG--PCLWMLPL  304 (305)
T ss_dssp             ------------------------EEEEECTTSCEEEEEECSSC-----CCEEEECTTSCEEEEEET--TEEEEEEC
T ss_pred             ------------------------cEEEECCCCCEEEEEECCCc-----eeEEEEeCCCCEEEEEcC--CeEEEEEC
Confidence                                    69999999999999887653     4555553  478999995  57888775

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.94  E-value=9e-25  Score=199.18  Aligned_cols=253  Identities=19%  Similarity=0.251  Sum_probs=191.5

Q ss_pred             CceEecCCCCCCCccEEEcCCCc-EEEEe-cCCeEEEEe-CCceEEEEecCCCcccCeEEcCCCCEEEEeCC-CcEEEEc
Q 017371           69 DFIKVGEGSVNHPEDASMDKNGV-IYTAT-RDGWIKRLQ-DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS  144 (372)
Q Consensus        69 ~~~~~~~g~~~~p~~i~~d~~G~-l~v~~-~~g~i~~~~-~g~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~-~gv~~~~  144 (372)
                      .++.+..+ +..||+++++++|+ ||+.+ .+++|++++ ++..+.+....+.|. +++++++|+||+++.. .+|.+++
T Consensus        19 ~~~~l~~~-~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~l~~~~dg~l~v~~~~~~~i~~~d   96 (296)
T 3e5z_A           19 EARRLADG-FTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQLSPEMHPSHHQN-GHCLNKQGHLIACSHGLRRLERQR   96 (296)
T ss_dssp             CCEEEECC-CSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSCEEEEESSCSSEE-EEEECTTCCEEEEETTTTEEEEEC
T ss_pred             cEEEEecC-CccccCCeEeCCCCEEEEEeCCCCEEEEEECCCCeEEEECCCCCcc-eeeECCCCcEEEEecCCCeEEEEc
Confidence            44566655 67899999999997 66555 788999999 444777776677788 9999999999999875 6799999


Q ss_pred             -CCC-cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccc--cccccccCCCeEEEEeCCCCeEEEEeCCccC
Q 017371          145 -EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYC--LDILEGKPHGQLLKYDPSSNITTLVADGFYF  220 (372)
Q Consensus       145 -~~g-~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~--~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~  220 (372)
                       .+| .+.+.....+.....+++++++++|++|++|+.  |+.....  .........++|++++++ ++.+.+...+..
T Consensus        97 ~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~--~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~  173 (296)
T 3e5z_A           97 EPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPT--YGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVK  173 (296)
T ss_dssp             STTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECS--HHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSS
T ss_pred             CCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCc--cccccccccccccccCCCcEEEEECCC-CCEEEeecCCCC
Confidence             578 666655444555567899999999999999862  1100000  000011235689999998 888888888889


Q ss_pred             cceEEEecCCCEEEEEeCCCCeEEEEEcc-CCCC-cceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchh
Q 017371          221 ANGVALSRDEDYVVVCESWKFRCRKYWLK-GERK-GKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKL  298 (372)
Q Consensus       221 ~~gi~~~~dg~~l~v~~~~~~~i~~~~~~-g~~~-~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~  298 (372)
                      |+++++++|++.+ ++++..++|++|+++ ..+. .....+ ....+.|+++++|++|++|+++ .              
T Consensus       174 ~~gi~~s~dg~~l-v~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~-~--------------  236 (296)
T 3e5z_A          174 PNGLAFLPSGNLL-VSDTGDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA-G--------------  236 (296)
T ss_dssp             EEEEEECTTSCEE-EEETTTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE-T--------------
T ss_pred             CccEEECCCCCEE-EEeCCCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc-C--------------
Confidence            9999999999977 999988999999986 2233 333455 4455689999999999999999 4              


Q ss_pred             HHHHHHhcCccccccccCCCceEEEEECCCCcEEEEEECCCCCeeccceeeEEE--C-CEEEEEeCCCCeEEEEeC
Q 017371          299 IKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV--D-NHLYVISLTSNFIGKVQL  371 (372)
Q Consensus       299 ~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~--~-g~L~igs~~~~~i~~~~~  371 (372)
                                           +.|.+++++|+.+..+..+.+     ++++.+.  + ++||+++.  +.|.++++
T Consensus       237 ---------------------~~v~~~~~~g~~~~~~~~~~~-----~~~~~f~~~d~~~L~v~t~--~~l~~~~~  284 (296)
T 3e5z_A          237 ---------------------DGVHVLTPDGDELGRVLTPQT-----TSNLCFGGPEGRTLYMTVS--TEFWSIET  284 (296)
T ss_dssp             ---------------------TEEEEECTTSCEEEEEECSSC-----CCEEEEESTTSCEEEEEET--TEEEEEEC
T ss_pred             ---------------------CeEEEECCCCCEEEEEECCCC-----ceeEEEECCCCCEEEEEcC--CeEEEEEc
Confidence                                 379999999999988887654     4555553  3 58999995  57888875

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.94  E-value=1.7e-24  Score=197.88  Aligned_cols=244  Identities=13%  Similarity=0.152  Sum_probs=184.2

Q ss_pred             EecCCCCCCCccEEEcC-CCcEEEEe-cCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCCEEEEeCCCcEEEEc-CC
Q 017371           72 KVGEGSVNHPEDASMDK-NGVIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-ED  146 (372)
Q Consensus        72 ~~~~g~~~~p~~i~~d~-~G~l~v~~-~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~-~~  146 (372)
                      .+......-+|+.+.++ ++.||+.+ .+++|++++  +++.+.+. ..+.+. +++++++|+||++. ..+|++++ .+
T Consensus         6 ~~~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~-~~~~~~-~i~~~~dG~l~v~~-~~~l~~~d~~~   82 (297)
T 3g4e_A            6 CVLPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVT-MDAPVS-SVALRQSGGYVATI-GTKFCALNWKE   82 (297)
T ss_dssp             EEECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEE-CSSCEE-EEEEBTTSSEEEEE-TTEEEEEETTT
T ss_pred             EEeccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEEe-CCCceE-EEEECCCCCEEEEE-CCeEEEEECCC
Confidence            33333366799999997 67899988 688999999  45555543 346778 99999999999997 57899999 56


Q ss_pred             C-cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEE
Q 017371          147 G-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVA  225 (372)
Q Consensus       147 g-~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~  225 (372)
                      + .+.+.....+.+...++++++|++|++|+++......      ........++||+++++ ++...+...+..|||++
T Consensus        83 g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~------~~~~~~~~~~l~~~d~~-g~~~~~~~~~~~pngi~  155 (297)
T 3g4e_A           83 QSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETA------PAVLERHQGALYSLFPD-HHVKKYFDQVDISNGLD  155 (297)
T ss_dssp             TEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSB------TTBCCTTCEEEEEECTT-SCEEEEEEEESBEEEEE
T ss_pred             CcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccc------cccccCCCcEEEEEECC-CCEEEEeeccccccceE
Confidence            7 6666554344445678999999999999987531100      00011346789999987 67777777888999999


Q ss_pred             EecCCCEEEEEeCCCCeEEEEEcc--CCCCcceeeeccC--CCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHH
Q 017371          226 LSRDEDYVVVCESWKFRCRKYWLK--GERKGKLETFAEN--LPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKH  301 (372)
Q Consensus       226 ~~~dg~~l~v~~~~~~~i~~~~~~--g~~~~~~~~~~~~--~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~  301 (372)
                      +++|++.+|++++..++|++|+++  +......+.+...  ..+.|+++++|++|+||+++..                 
T Consensus       156 ~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~-----------------  218 (297)
T 3g4e_A          156 WSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYN-----------------  218 (297)
T ss_dssp             ECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEET-----------------
T ss_pred             EcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcC-----------------
Confidence            999999999999999999999874  3233333444332  2367999999999999999987                 


Q ss_pred             HHHhcCccccccccCCCceEEEEECCC-CcEEEEEECCCCCeeccceeeEEEC---CEEEEEeCCC
Q 017371          302 VLAAYPKLFSQFITLGGGAHLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQVD---NHLYVISLTS  363 (372)
Q Consensus       302 ~~~~~p~~~~~~~~~~~~~~v~~~~~~-g~~~~~~~~~~g~~~~~~t~~~~~~---g~L~igs~~~  363 (372)
                                       .+.|.+++++ |+.+..+..+..    .++++++.+   ++||+++...
T Consensus       219 -----------------~~~v~~~d~~tG~~~~~i~~p~~----~~t~~~f~g~d~~~L~vt~~~~  263 (297)
T 3g4e_A          219 -----------------GGRVIRLDPVTGKRLQTVKLPVD----KTTSCCFGGKNYSEMYVTCARD  263 (297)
T ss_dssp             -----------------TTEEEEECTTTCCEEEEEECSSS----BEEEEEEESGGGCEEEEEEBCT
T ss_pred             -----------------CCEEEEEcCCCceEEEEEECCCC----CceEEEEeCCCCCEEEEEcCCc
Confidence                             4689999997 999998887643    467788752   6899999754

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.94  E-value=3.7e-24  Score=196.00  Aligned_cols=260  Identities=21%  Similarity=0.297  Sum_probs=191.0

Q ss_pred             ceEecCCCCCCCccEEEcCCCcEEEE--------ecCCeEEEEe--CCceEEEEe-----cCCCcccCeEEcCC-CCEEE
Q 017371           70 FIKVGEGSVNHPEDASMDKNGVIYTA--------TRDGWIKRLQ--DGTWVNWKF-----IDSQTLVGLTSTKE-GHLII  133 (372)
Q Consensus        70 ~~~~~~g~~~~p~~i~~d~~G~l~v~--------~~~g~i~~~~--~g~~~~~~~-----~~~~p~~gl~~d~d-G~l~v  133 (372)
                      .+.+..+ +..|++++++++|.+|++        ..+++|++++  +++++.+..     ..+.|. +++++++ |+|||
T Consensus        10 ~~~~~~~-~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~-~i~~~~~~g~l~v   87 (314)
T 1pjx_A           10 FTKVTED-IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPA-GCQCDRDANQLFV   87 (314)
T ss_dssp             CEEEECC-CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEE-EEEECSSSSEEEE
T ss_pred             Hhhhhcc-CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCc-eEEEecCCCcEEE
Confidence            4455555 789999999999999999        4788999999  677766644     335788 9999999 99999


Q ss_pred             EeCCCcEEEEcCCC-cEEE-eeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeE
Q 017371          134 CDNANGLHKVSEDG-VENF-LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT  211 (372)
Q Consensus       134 ~~~~~gv~~~~~~g-~~~l-~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~  211 (372)
                      ++...+|++++.+| ...+ .....+.....++++++|++|++|+++........++  ........++|+++|++ ++.
T Consensus        88 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~-g~~  164 (314)
T 1pjx_A           88 ADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADY--TRSMQEKFGSIYCFTTD-GQM  164 (314)
T ss_dssp             EETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCC--CBTTSSSCEEEEEECTT-SCE
T ss_pred             EECCCCEEEEeCCCCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccc--cccccCCCCeEEEECCC-CCE
Confidence            98777899999448 5544 3322233345789999999999999976311000000  00112234789999987 777


Q ss_pred             EEEeCCccCcceEEEe----cCCCEEEEEeCCCCeEEEEEccC-CCCcceeeeccC--CC-CCCceeEEcCCCCEEEEEe
Q 017371          212 TLVADGFYFANGVALS----RDEDYVVVCESWKFRCRKYWLKG-ERKGKLETFAEN--LP-GAPDNINLAPDGTFWIAII  283 (372)
Q Consensus       212 ~~~~~~~~~~~gi~~~----~dg~~l~v~~~~~~~i~~~~~~g-~~~~~~~~~~~~--~~-g~p~~i~~d~~G~lwva~~  283 (372)
                      +.+......|++++++    +|++.+|++++.+++|++|++++ .+......+...  .. +.|+++++|++|++|+++.
T Consensus       165 ~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~  244 (314)
T 1pjx_A          165 IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANW  244 (314)
T ss_dssp             EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEE
T ss_pred             EEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEc
Confidence            7766667789999999    99988999998889999999762 222222233221  11 5689999999999999997


Q ss_pred             cCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEECCC-CcEEEEEECCCCCeeccceeeEEE-CCE-EEEEe
Q 017371          284 KLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQV-DNH-LYVIS  360 (372)
Q Consensus       284 ~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~-g~~~~~~~~~~g~~~~~~t~~~~~-~g~-L~igs  360 (372)
                      .                                  .+.|.+++++ |+.+..+..+.    ..++++.++ +++ ||+++
T Consensus       245 ~----------------------------------~~~i~~~d~~~g~~~~~~~~~~----~~~~~i~~~~dg~~l~v~~  286 (314)
T 1pjx_A          245 G----------------------------------SSHIEVFGPDGGQPKMRIRCPF----EKPSNLHFKPQTKTIFVTE  286 (314)
T ss_dssp             T----------------------------------TTEEEEECTTCBSCSEEEECSS----SCEEEEEECTTSSEEEEEE
T ss_pred             C----------------------------------CCEEEEEcCCCCcEeEEEeCCC----CCceeEEECCCCCEEEEEe
Confidence            6                                  4689999988 88777776543    346777775 454 99999


Q ss_pred             CCCCeEEEEeCC
Q 017371          361 LTSNFIGKVQLS  372 (372)
Q Consensus       361 ~~~~~i~~~~~~  372 (372)
                      ...+.|.+++++
T Consensus       287 ~~~~~l~~~~~~  298 (314)
T 1pjx_A          287 HENNAVWKFEWQ  298 (314)
T ss_dssp             TTTTEEEEEECS
T ss_pred             CCCCeEEEEeCC
Confidence            988999999863

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.92  E-value=3.4e-23  Score=199.11  Aligned_cols=238  Identities=12%  Similarity=0.096  Sum_probs=182.9

Q ss_pred             CCCCCccEEEcCC---CcEEEEecCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCCEEEEeCC-----CcEEEEcCC
Q 017371           77 SVNHPEDASMDKN---GVIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNA-----NGLHKVSED  146 (372)
Q Consensus        77 ~~~~p~~i~~d~~---G~l~v~~~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~-----~gv~~~~~~  146 (372)
                      .|..|.+|++|++   |+||+++..++|++++  ++++..+......|. +++++++|+|||++..     .+++.++.+
T Consensus       137 ~~~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~-giavd~dG~lyVad~~~~~~~~gv~~~~~~  215 (433)
T 4hw6_A          137 AFDNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCA-DVNFTLNGDMVVVDDQSSDTNTGIYLFTRA  215 (433)
T ss_dssp             CCSCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEE-EEEECTTCCEEEEECCSCTTSEEEEEECGG
T ss_pred             ccCCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCcc-EEEECCCCCEEEEcCCCCcccceEEEEECC
Confidence            6788999999974   8999999658999999  678888777777899 9999999999999863     357777743


Q ss_pred             C-c---EEEeeecCCcccccccceEEcc-CCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeE-EEEeC--Cc
Q 017371          147 G-V---ENFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT-TLVAD--GF  218 (372)
Q Consensus       147 g-~---~~l~~~~~~~~~~~~~~l~~d~-dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~-~~~~~--~~  218 (372)
                      + .   ..+.      .+..|+++++|+ +|+|||+|.                 ..++|+++|++++++ +.+..  ..
T Consensus       216 ~~~~~~~~~~------~~~~P~giavd~~~G~lyv~d~-----------------~~~~V~~~d~~~g~~~~~~~~~~~~  272 (433)
T 4hw6_A          216 SGFTERLSLC------NARGAKTCAVHPQNGKIYYTRY-----------------HHAMISSYDPATGTLTEEEVMMDTK  272 (433)
T ss_dssp             GTTCCEEEEE------ECSSBCCCEECTTTCCEEECBT-----------------TCSEEEEECTTTCCEEEEEEECSCC
T ss_pred             CCeecccccc------ccCCCCEEEEeCCCCeEEEEEC-----------------CCCEEEEEECCCCeEEEEEeccCCC
Confidence            3 2   1221      246789999999 899999876                 467999999987776 33322  23


Q ss_pred             cCcceEEEecCCCEEEEEeCCCCeEEEEEccCC--CCcceeeeccC--C------------CCCCceeEE---------c
Q 017371          219 YFANGVALSRDEDYVVVCESWKFRCRKYWLKGE--RKGKLETFAEN--L------------PGAPDNINL---------A  273 (372)
Q Consensus       219 ~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~--~~~~~~~~~~~--~------------~g~p~~i~~---------d  273 (372)
                      ..+.++++++++++|||+++.+++|++++.++.  .......+...  .            ...|.++++         |
T Consensus       273 ~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd  352 (433)
T 4hw6_A          273 GSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEE  352 (433)
T ss_dssp             SSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSS
T ss_pred             CCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccC
Confidence            345679999999999999999999999987642  22222222211  1            124788999         9


Q ss_pred             CCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEECCCCcEEEEEECC--------CC-----
Q 017371          274 PDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDP--------TG-----  340 (372)
Q Consensus       274 ~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~--------~g-----  340 (372)
                      .+|+|||++..                                  +++|.+++++|++.......        +|     
T Consensus       353 ~~g~lyvaD~~----------------------------------n~~I~~~~~~G~v~t~~G~g~~~~~G~~dG~~~~~  398 (433)
T 4hw6_A          353 DEYDFYFCDRD----------------------------------SHTVRVLTPEGRVTTYAGRGNSREWGYVDGELRSQ  398 (433)
T ss_dssp             CCEEEEEEETT----------------------------------TTEEEEECTTSEEEEEECCCTTCSSCCBCEETTTT
T ss_pred             CCCcEEEEECC----------------------------------CCEEEEECCCCCEEEEEeCCCCCccccCCCccccc
Confidence            99999999987                                  57899999999776655432        11     


Q ss_pred             CeeccceeeEEE--CCEEEEEeCCCCeEEEEeCC
Q 017371          341 QLMSFVTSGLQV--DNHLYVISLTSNFIGKVQLS  372 (372)
Q Consensus       341 ~~~~~~t~~~~~--~g~L~igs~~~~~i~~~~~~  372 (372)
                      ..++.+.+++.+  +|+||+++..+++|.+++++
T Consensus       399 ~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          399 ALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             CBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             cEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            136678899988  69999999999999999875

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.92  E-value=7.6e-23  Score=187.85  Aligned_cols=230  Identities=19%  Similarity=0.230  Sum_probs=174.7

Q ss_pred             eEecCCCCCCCccEEEcCCCcEEEEe-cCCeEEEEe-CCceEEEEecCCCcccCeEEcCCCCEEEEeCC-Cc--EEEEc-
Q 017371           71 IKVGEGSVNHPEDASMDKNGVIYTAT-RDGWIKRLQ-DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNA-NG--LHKVS-  144 (372)
Q Consensus        71 ~~~~~g~~~~p~~i~~d~~G~l~v~~-~~g~i~~~~-~g~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~-~g--v~~~~-  144 (372)
                      ..++.+  ..||++++|++|+||+++ .+++|++++ +++...+....+.|. +++++++|+|||++.. .+  +++++ 
T Consensus        26 ~~~p~~--~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~~~~~p~-gia~~~dG~l~vad~~~~~~~v~~~d~  102 (306)
T 2p4o_A           26 TSFPVN--TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVS-GLAFTSNGDLVATGWNADSIPVVSLVK  102 (306)
T ss_dssp             EEECTT--CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEE-EEEECTTSCEEEEEECTTSCEEEEEEC
T ss_pred             EeCCCC--CCcceEEECCCCCEEEEeCCCCeEEEECCCCceEEEEeCCCCce-eEEEcCCCcEEEEeccCCcceEEEEcC
Confidence            344444  589999999999999999 789999999 777666656667899 9999999999999854 23  88888 


Q ss_pred             CCC-cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEE---------
Q 017371          145 EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV---------  214 (372)
Q Consensus       145 ~~g-~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~---------  214 (372)
                      ++| ++.+... +.  ..++++++..+++++|++|.                 ..++||++|+.+++.++.         
T Consensus       103 ~~g~~~~~~~~-~~--~~~~~g~~~~~~~~~~v~d~-----------------~~g~i~~~d~~~~~~~v~~~~~~~~~~  162 (306)
T 2p4o_A          103 SDGTVETLLTL-PD--AIFLNGITPLSDTQYLTADS-----------------YRGAIWLIDVVQPSGSIWLEHPMLARS  162 (306)
T ss_dssp             TTSCEEEEEEC-TT--CSCEEEEEESSSSEEEEEET-----------------TTTEEEEEETTTTEEEEEEECGGGSCS
T ss_pred             CCCeEEEEEeC-CC--ccccCcccccCCCcEEEEEC-----------------CCCeEEEEeCCCCcEeEEEECCccccc
Confidence            777 6655443 22  35678888888889999875                 467999999876543332         


Q ss_pred             --eCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccC-CCCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHH
Q 017371          215 --ADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKG-ERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMK  291 (372)
Q Consensus       215 --~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g-~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~  291 (372)
                        ...+..|||+  ++|+++||++++.+++|++|++++ .+.+..+.+...  ..|++|++|++|++||++..       
T Consensus       163 ~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~--~~P~gi~vd~dG~l~va~~~-------  231 (306)
T 2p4o_A          163 NSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ--TNIDDFAFDVEGNLYGATHI-------  231 (306)
T ss_dssp             STTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES--CCCSSEEEBTTCCEEEECBT-------
T ss_pred             cccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc--CCCCCeEECCCCCEEEEeCC-------
Confidence              1345678998  889999999999999999999975 334444455432  46999999999999999987       


Q ss_pred             HhhcchhHHHHHHhcCccccccccCCCceEEEEECCCCcEEEEEECCCCCeeccceeeEEE-----CCEEEEEeCCC
Q 017371          292 ILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV-----DNHLYVISLTS  363 (372)
Q Consensus       292 ~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~-----~g~L~igs~~~  363 (372)
                                                 .+.|.+++++|+.......+.+  ...++++++.     +++||+++..+
T Consensus       232 ---------------------------~~~V~~~~~~G~~~~~~~~~~~--~~~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          232 ---------------------------YNSVVRIAPDRSTTIIAQAEQG--VIGSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             ---------------------------TCCEEEECTTCCEEEEECGGGT--CTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             ---------------------------CCeEEEECCCCCEEEEeecccc--cCCceEEEEecccCCCCEEEEECCCC
Confidence                                       5689999999987543222222  3467888874     37999999754

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.90  E-value=2.6e-21  Score=175.09  Aligned_cols=234  Identities=15%  Similarity=0.264  Sum_probs=175.4

Q ss_pred             CCCCCCCccEEEcCCCcEEEEe-cCCeEEEEe-CCceE-EEEec------CCCcccCeEE-cCCCCEEEEeC--CCcEEE
Q 017371           75 EGSVNHPEDASMDKNGVIYTAT-RDGWIKRLQ-DGTWV-NWKFI------DSQTLVGLTS-TKEGHLIICDN--ANGLHK  142 (372)
Q Consensus        75 ~g~~~~p~~i~~d~~G~l~v~~-~~g~i~~~~-~g~~~-~~~~~------~~~p~~gl~~-d~dG~l~v~~~--~~gv~~  142 (372)
                      .|.+..|.+++++++|.+|+++ .+++|.+++ +++.. .+...      ...|. ++++ +++|+|||++.  ...|.+
T Consensus        26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~-~i~~~~~~g~l~v~~~~~~~~i~~  104 (286)
T 1q7f_A           26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPN-RVAVVRNSGDIIVTERSPTHQIQI  104 (286)
T ss_dssp             TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEE-EEEEETTTTEEEEEECGGGCEEEE
T ss_pred             CCccCCCceEEECCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCce-EEEEEcCCCeEEEEcCCCCCEEEE
Confidence            3567889999999999999997 678999999 66543 33221      14678 9999 58999999985  467889


Q ss_pred             EcCCC--cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEe--CCc
Q 017371          143 VSEDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA--DGF  218 (372)
Q Consensus       143 ~~~~g--~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~--~~~  218 (372)
                      ++.+|  ...+    .......|++|+++++|++|+++.                 ..++|+++|++......+.  ..+
T Consensus       105 ~d~~g~~~~~~----~~~~~~~~~~i~~~~~g~l~v~~~-----------------~~~~i~~~~~~g~~~~~~~~~~~~  163 (286)
T 1q7f_A          105 YNQYGQFVRKF----GATILQHPRGVTVDNKGRIIVVEC-----------------KVMRVIIFDQNGNVLHKFGCSKHL  163 (286)
T ss_dssp             ECTTSCEEEEE----CTTTCSCEEEEEECTTSCEEEEET-----------------TTTEEEEECTTSCEEEEEECTTTC
T ss_pred             ECCCCcEEEEe----cCccCCCceEEEEeCCCCEEEEEC-----------------CCCEEEEEcCCCCEEEEeCCCCcc
Confidence            98666  3333    112235688999999999999875                 4578999998744444443  345


Q ss_pred             cCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccC-CCCCCceeEEcCCCCEEEEEecCchhHHHHhhcch
Q 017371          219 YFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAEN-LPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSK  297 (372)
Q Consensus       219 ~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~-~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~  297 (372)
                      ..|++++++++|+ +|+++..+++|.+|+.++..   ...+... ....|.++++|++|++||++..             
T Consensus       164 ~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~g~~---~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~-------------  226 (286)
T 1q7f_A          164 EFPNGVVVNDKQE-IFISDNRAHCVKVFNYEGQY---LRQIGGEGITNYPIGVGINSNGEILIADNH-------------  226 (286)
T ss_dssp             SSEEEEEECSSSE-EEEEEGGGTEEEEEETTCCE---EEEESCTTTSCSEEEEEECTTCCEEEEECS-------------
T ss_pred             CCcEEEEECCCCC-EEEEECCCCEEEEEcCCCCE---EEEEccCCccCCCcEEEECCCCCEEEEeCC-------------
Confidence            6799999999986 99999888999999986532   2223211 1246899999999999999976             


Q ss_pred             hHHHHHHhcCccccccccCCCce-EEEEECCCCcEEEEEECCCCCeeccceeeEEE-CCEEEEEeCCCCeEEEEeC
Q 017371          298 LIKHVLAAYPKLFSQFITLGGGA-HLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL  371 (372)
Q Consensus       298 ~~r~~~~~~p~~~~~~~~~~~~~-~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~L~igs~~~~~i~~~~~  371 (372)
                                           .+ .|..++++|+.+..+....+  ...+.++..+ +|+||+++. .+.|.++++
T Consensus       227 ---------------------~~~~i~~~~~~g~~~~~~~~~~~--~~~~~~i~~~~~g~l~vs~~-~~~v~v~~~  278 (286)
T 1q7f_A          227 ---------------------NNFNLTIFTQDGQLISALESKVK--HAQCFDVALMDDGSVVLASK-DYRLYIYRY  278 (286)
T ss_dssp             ---------------------SSCEEEEECTTSCEEEEEEESSC--CSCEEEEEEETTTEEEEEET-TTEEEEEEC
T ss_pred             ---------------------CCEEEEEECCCCCEEEEEcccCC--CCcceeEEECCCCcEEEECC-CCeEEEEEc
Confidence                                 44 89999999999888765432  2245677776 689999974 789988875

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.90  E-value=8.4e-22  Score=189.32  Aligned_cols=238  Identities=13%  Similarity=0.097  Sum_probs=181.3

Q ss_pred             CCCCCccEEEcC--CCcEEEEecCCeEEEEe-C-CceEEEEecCCCcccCeEEcCCCC-EEEEeCCC-----cEEEEcCC
Q 017371           77 SVNHPEDASMDK--NGVIYTATRDGWIKRLQ-D-GTWVNWKFIDSQTLVGLTSTKEGH-LIICDNAN-----GLHKVSED  146 (372)
Q Consensus        77 ~~~~p~~i~~d~--~G~l~v~~~~g~i~~~~-~-g~~~~~~~~~~~p~~gl~~d~dG~-l~v~~~~~-----gv~~~~~~  146 (372)
                      .+..|.+|++|+  +|+||+++..++|.+++ + +.++.+......|. +|+++++|+ |||++...     .++.++.+
T Consensus       135 ~~~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~-~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~  213 (430)
T 3tc9_A          135 GFGGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVR-TICWTHEADSMIITNDQNNNDRPNNYILTRE  213 (430)
T ss_dssp             CCSCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEE-EEEECTTSSEEEEEECCSCTTSEEEEEEEGG
T ss_pred             CCCCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcc-eEEEeCCCCEEEEEeCCCCcccceEEEEeCC
Confidence            477899999995  58999999668999999 4 56777777777899 999999998 99998632     46666655


Q ss_pred             C-cE---EEeeecCCcccccccceEEcc-CCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEe--CCcc
Q 017371          147 G-VE---NFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA--DGFY  219 (372)
Q Consensus       147 g-~~---~l~~~~~~~~~~~~~~l~~d~-dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~--~~~~  219 (372)
                      | ..   .+.      .+..|+++++++ +|+||++|.                 ..++|+++++++++...+.  ....
T Consensus       214 g~~~~~~~l~------~~~~p~giavdp~~g~lyv~d~-----------------~~~~V~~~~~~~~~~~~~~~~~~~~  270 (430)
T 3tc9_A          214 SGFKVITELT------KGQNCNGAETHPINGELYFNSW-----------------NAGQVFRYDFTTQETTPLFTIQDSG  270 (430)
T ss_dssp             GTSCSEEEEE------ECSSCCCEEECTTTCCEEEEET-----------------TTTEEEEEETTTTEEEEEEECSSSS
T ss_pred             Cceeeeeeec------cCCCceEEEEeCCCCEEEEEEC-----------------CCCEEEEEECCCCcEEEEEEcCCCC
Confidence            5 32   222      246789999999 899999986                 4679999999877763332  2345


Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEEccCC--CCcceeeeccC--------------CCCCCc-eeEE--------cC
Q 017371          220 FANGVALSRDEDYVVVCESWKFRCRKYWLKGE--RKGKLETFAEN--------------LPGAPD-NINL--------AP  274 (372)
Q Consensus       220 ~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~--~~~~~~~~~~~--------------~~g~p~-~i~~--------d~  274 (372)
                      .|++++++++|++|||++..+++|++++.++.  +......+...              ....|. ++++        |+
T Consensus       271 ~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~  350 (430)
T 3tc9_A          271 WEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSD  350 (430)
T ss_dssp             CCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSC
T ss_pred             cceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCC
Confidence            79999999999999999999999999998753  11111122111              012477 7888        57


Q ss_pred             CCCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEECCCCcEEEEEECC--------CC-----C
Q 017371          275 DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDP--------TG-----Q  341 (372)
Q Consensus       275 ~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~--------~g-----~  341 (372)
                      +|+|||++..                                  ++.|.+++++|++.......        +|     .
T Consensus       351 ~g~lyvaD~~----------------------------------n~~I~~i~~~G~v~~~~g~g~~~~~G~~dG~~~~~~  396 (430)
T 3tc9_A          351 EYDFYFCDRE----------------------------------NHCIRILTPQGRVTTFAGRGSNGTSGYNDGDLRQEA  396 (430)
T ss_dssp             CEEEEEEEGG----------------------------------GTEEEEECTTSEEEEEEECCTTSSSSCBCEETTTTC
T ss_pred             CCeEEEEECC----------------------------------CcEEEEECCCCcEEEEEeCCCCCCCcccCCCchhhc
Confidence            7999999987                                  57899999999877666541        12     1


Q ss_pred             eeccceeeEEE--CCEEEEEeCCCCeEEEEeCC
Q 017371          342 LMSFVTSGLQV--DNHLYVISLTSNFIGKVQLS  372 (372)
Q Consensus       342 ~~~~~t~~~~~--~g~L~igs~~~~~i~~~~~~  372 (372)
                      .++.+..++.+  +++||+++..+++|.+++++
T Consensus       397 ~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          397 RFNHPEGIVYDEERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             BCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             EeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence            36678999988  48999999999999999865

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.90  E-value=1.3e-21  Score=175.17  Aligned_cols=230  Identities=17%  Similarity=0.211  Sum_probs=169.9

Q ss_pred             CCccEEEcCCCcEEE-Ee-cCCeEEEEe-CC-ceEEEEe-cCCCcccCeEEcCCCCEEEEeCCCcEEEEcCCC--cEEEe
Q 017371           80 HPEDASMDKNGVIYT-AT-RDGWIKRLQ-DG-TWVNWKF-IDSQTLVGLTSTKEGHLIICDNANGLHKVSEDG--VENFL  152 (372)
Q Consensus        80 ~p~~i~~d~~G~l~v-~~-~~g~i~~~~-~g-~~~~~~~-~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~~~g--~~~l~  152 (372)
                      .|++|++|++|+||+ ++ .+++|.+++ ++ ....+.. ....|. +++++++|+|||++...+|++++.++  ...+.
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~-~i~~~~~g~l~v~~~~~~i~~~d~~~~~~~~~~  103 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQ-GLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLP  103 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCC-CEEECTTCCEEEEETTTEEEEECTTCSCCEECC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcc-eeEECCCCCEEEEcCCCEEEEEeCCCceEeeee
Confidence            999999999999999 85 678999998 33 3222222 235788 99999999999998756799999555  33221


Q ss_pred             eecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEE-eCCccCcceEEEecCCC
Q 017371          153 SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-ADGFYFANGVALSRDED  231 (372)
Q Consensus       153 ~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~-~~~~~~~~gi~~~~dg~  231 (372)
                          ...+..+.+|+++++|++|+++.                 ..++|++++..+...... ...+..|++++++++|+
T Consensus       104 ----~~~~~~p~~i~~~~~g~l~v~~~-----------------~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~  162 (270)
T 1rwi_B          104 ----FDGLNYPEGLAVDTQGAVYVADR-----------------GNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN  162 (270)
T ss_dssp             ----CCSCSSEEEEEECTTCCEEEEEG-----------------GGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCC
T ss_pred             ----cCCcCCCcceEECCCCCEEEEEC-----------------CCCEEEEEECCCceeEeeccccCCCceeEEEeCCCC
Confidence                12235688999999999999875                 357899998765443332 23456899999999997


Q ss_pred             EEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCcccc
Q 017371          232 YVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFS  311 (372)
Q Consensus       232 ~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~  311 (372)
                       +|+++..+++|.+|+.++....   .........|.+|++|++|++|+++..                           
T Consensus       163 -l~v~~~~~~~i~~~~~~~~~~~---~~~~~~~~~p~~i~~d~~g~l~v~~~~---------------------------  211 (270)
T 1rwi_B          163 -VYVTDTDNNRVVKLEAESNNQV---VLPFTDITAPWGIAVDEAGTVYVTEHN---------------------------  211 (270)
T ss_dssp             -EEEEEGGGTEEEEECTTTCCEE---ECCCSSCCSEEEEEECTTCCEEEEETT---------------------------
T ss_pred             -EEEEECCCCEEEEEecCCCceE---eecccCCCCceEEEECCCCCEEEEECC---------------------------
Confidence             9999988889999998764211   111111146899999999999999976                           


Q ss_pred             ccccCCCceEEEEECCCCcEEEEEECCCCCeeccceeeEEE-CCEEEEEeCCCCeEEEEeCC
Q 017371          312 QFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQLS  372 (372)
Q Consensus       312 ~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~L~igs~~~~~i~~~~~~  372 (372)
                             .+.|.+++++++....... .+  +..+.++..+ +|+||+++..++.|.+++++
T Consensus       212 -------~~~v~~~~~~~~~~~~~~~-~~--~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~  263 (270)
T 1rwi_B          212 -------TNQVVKLLAGSTTSTVLPF-TG--LNTPLAVAVDSDRTVYVADRGNDRVVKLTSL  263 (270)
T ss_dssp             -------TSCEEEECTTCSCCEECCC-CS--CSCEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred             -------CCcEEEEcCCCCcceeecc-CC--CCCceeEEECCCCCEEEEECCCCEEEEEcCC
Confidence                   4679999988876544222 12  3467888886 58999999999999999864

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.90  E-value=7.7e-21  Score=181.58  Aligned_cols=237  Identities=13%  Similarity=0.078  Sum_probs=176.3

Q ss_pred             CCCCCccEEEcCCCcEEEEe-cCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCC-EEEEeCCC--cEEEEcC-CC-c
Q 017371           77 SVNHPEDASMDKNGVIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNAN--GLHKVSE-DG-V  148 (372)
Q Consensus        77 ~~~~p~~i~~d~~G~l~v~~-~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~-l~v~~~~~--gv~~~~~-~g-~  148 (372)
                      .+..|.+|++|++|+||+++ .+++|.+++  ++.+..+......+.  ++++++|+ ||+++...  .+++++. .+ .
T Consensus       129 ~~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~--ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~  206 (409)
T 3hrp_A          129 KFKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK--PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA  206 (409)
T ss_dssp             CCCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB--CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC
T ss_pred             ccCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc--eeEecCCCcEEEEecCCCceEEEEEcCCCce
Confidence            47789999999999999999 568999999  467777766544443  89999986 78887643  6999994 44 3


Q ss_pred             -EEEeeecCCcccccccceEEcc-CCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEE----eCCcc--C
Q 017371          149 -ENFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV----ADGFY--F  220 (372)
Q Consensus       149 -~~l~~~~~~~~~~~~~~l~~d~-dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~----~~~~~--~  220 (372)
                       ..+. .........++++++++ +|+||+++                  ..++|+++|++++....+    ..+..  .
T Consensus       207 ~~~~g-~~~~~~~~~p~~iav~p~~g~lyv~d------------------~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~  267 (409)
T 3hrp_A          207 PTRIG-QLGSTFSGKIGAVALDETEEWLYFVD------------------SNKNFGRFNVKTQEVTLIKQLELSGSLGTN  267 (409)
T ss_dssp             EEEEE-ECCTTSCSCCCBCEECTTSSEEEEEC------------------TTCEEEEEETTTCCEEEEEECCCCSCCCCS
T ss_pred             eEEee-eccchhcCCcEEEEEeCCCCeEEEEE------------------CCCcEEEEECCCCCEEEEecccccCCCCCC
Confidence             2331 11111346789999999 79999964                  356899999987776655    22222  2


Q ss_pred             cc-eEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCC--------------CCCCceeEEcCCCCEEEEEe-c
Q 017371          221 AN-GVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENL--------------PGAPDNINLAPDGTFWIAII-K  284 (372)
Q Consensus       221 ~~-gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~--------------~g~p~~i~~d~~G~lwva~~-~  284 (372)
                      |. +++++++++.||++++.+++|++++.++.    ...+....              ...|.+|++|++|+|||++. .
T Consensus       268 P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~----~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~  343 (409)
T 3hrp_A          268 PGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE----CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFK  343 (409)
T ss_dssp             SCCEEEEETTTTEEEEEETTTTEEEEECTTCC----EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTT
T ss_pred             ccccEEEeCCCCEEEEEeCCCCEEEEEecCCC----EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCC
Confidence            44 99999987789999999999999998764    11221111              23599999999999999998 7


Q ss_pred             CchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEEC-CCCcEEEEEECC------CC----CeeccceeeEEE-
Q 017371          285 LDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVA-EDGTIIRNLVDP------TG----QLMSFVTSGLQV-  352 (372)
Q Consensus       285 ~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~-~~g~~~~~~~~~------~g----~~~~~~t~~~~~-  352 (372)
                                                        ++.|.+++ ++|++......+      +|    ..++.+.+++.+ 
T Consensus       344 ----------------------------------~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~  389 (409)
T 3hrp_A          344 ----------------------------------GYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDG  389 (409)
T ss_dssp             ----------------------------------TCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECS
T ss_pred             ----------------------------------CCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcC
Confidence                                              57899999 788876555431      11    125678889887 


Q ss_pred             CCEEEEEeCCCCeEEEEeCC
Q 017371          353 DNHLYVISLTSNFIGKVQLS  372 (372)
Q Consensus       353 ~g~L~igs~~~~~i~~~~~~  372 (372)
                      +|+||++...++.|.++.++
T Consensus       390 ~g~lyVad~~n~~Ir~i~~e  409 (409)
T 3hrp_A          390 EGGYWIAEAWGKAIRKYAVE  409 (409)
T ss_dssp             SSEEEEEESTTCEEEEEEEC
T ss_pred             CCCEEEEECCCCeEEEEEeC
Confidence            59999999999999999875

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.90  E-value=6.4e-21  Score=176.58  Aligned_cols=242  Identities=17%  Similarity=0.166  Sum_probs=180.5

Q ss_pred             CceEecCCCCCCCccEEEcCC-CcEEEEe-cCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCCEEEEeCCCcEEEEc
Q 017371           69 DFIKVGEGSVNHPEDASMDKN-GVIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS  144 (372)
Q Consensus        69 ~~~~~~~g~~~~p~~i~~d~~-G~l~v~~-~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~  144 (372)
                      +++.+......-+|+.+++++ +.+|+.+ .+++|++++  +++.+.+.. ...+. +++++++|++|++. ..||++++
T Consensus        39 ~~~~~~~~~~~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~-~~~v~-~i~~~~dg~l~v~~-~~gl~~~d  115 (326)
T 2ghs_A           39 AGRVLDETPMLLGEGPTFDPASGTAWWFNILERELHELHLASGRKTVHAL-PFMGS-ALAKISDSKQLIAS-DDGLFLRD  115 (326)
T ss_dssp             CCEEEECSCCSBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEEC-SSCEE-EEEEEETTEEEEEE-TTEEEEEE
T ss_pred             ceEEeeccCCCCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEC-CCcce-EEEEeCCCeEEEEE-CCCEEEEE
Confidence            456666655567899999985 6788887 678999999  555655543 35677 99999999999997 46899999


Q ss_pred             -CCC-cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcc
Q 017371          145 -EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFAN  222 (372)
Q Consensus       145 -~~g-~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~  222 (372)
                       .+| .+.+.....+.....++++++|++|++|+++....           .....++||+++  +++.+.+......++
T Consensus       116 ~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~-----------~~~~~~~l~~~~--~g~~~~~~~~~~~~~  182 (326)
T 2ghs_A          116 TATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRK-----------AETGAGSIYHVA--KGKVTKLFADISIPN  182 (326)
T ss_dssp             TTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETT-----------CCTTCEEEEEEE--TTEEEEEEEEESSEE
T ss_pred             CCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCc-----------CCCCceEEEEEe--CCcEEEeeCCCcccC
Confidence             567 66554322223345688999999999999864210           012457899999  478777666667899


Q ss_pred             eEEEecCCCEEEEEeCCCCeEEEEEcc--CC-CCcceeeecc--CCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcch
Q 017371          223 GVALSRDEDYVVVCESWKFRCRKYWLK--GE-RKGKLETFAE--NLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSK  297 (372)
Q Consensus       223 gi~~~~dg~~l~v~~~~~~~i~~~~~~--g~-~~~~~~~~~~--~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~  297 (372)
                      ++++++|++.+|++++..++|++|+.+  +. +......+..  ...+.|+++++|++|++|+++..             
T Consensus       183 ~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~-------------  249 (326)
T 2ghs_A          183 SICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG-------------  249 (326)
T ss_dssp             EEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET-------------
T ss_pred             CeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeC-------------
Confidence            999999999999999988899999985  33 3333333322  23457999999999999999976             


Q ss_pred             hHHHHHHhcCccccccccCCCceEEEEECCCCcEEEEEECCCCCeeccceeeEEE--C-CEEEEEeCCCC
Q 017371          298 LIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV--D-NHLYVISLTSN  364 (372)
Q Consensus       298 ~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~--~-g~L~igs~~~~  364 (372)
                                           .+.|.+++++|+.+..+..+..    .++++.+.  + ++||+++....
T Consensus       250 ---------------------~~~v~~~d~~g~~~~~i~~~~~----~~~~~af~g~d~~~L~vt~~~~~  294 (326)
T 2ghs_A          250 ---------------------EGAVDRYDTDGNHIARYEVPGK----QTTCPAFIGPDASRLLVTSAREH  294 (326)
T ss_dssp             ---------------------TTEEEEECTTCCEEEEEECSCS----BEEEEEEESTTSCEEEEEEBCTT
T ss_pred             ---------------------CCEEEEECCCCCEEEEEECCCC----CcEEEEEecCCCCEEEEEecCCC
Confidence                                 4689999999999888876643    46777765  2 68999997763

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.90  E-value=6.1e-21  Score=176.37  Aligned_cols=246  Identities=19%  Similarity=0.239  Sum_probs=179.1

Q ss_pred             CCCCccEEEcCCCcEEEEe-cCCeEEEEe--CCceEEEE-ecCCCcccCeEEcCCCCEEEEeCCC-----cEEEEc-CCC
Q 017371           78 VNHPEDASMDKNGVIYTAT-RDGWIKRLQ--DGTWVNWK-FIDSQTLVGLTSTKEGHLIICDNAN-----GLHKVS-EDG  147 (372)
Q Consensus        78 ~~~p~~i~~d~~G~l~v~~-~~g~i~~~~--~g~~~~~~-~~~~~p~~gl~~d~dG~l~v~~~~~-----gv~~~~-~~g  147 (372)
                      ...|++++++++|+||+++ .++.|++++  +++.+.+. .....+. +++++++|+||+++...     +|++++ ..+
T Consensus        44 ~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~-~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~  122 (333)
T 2dg1_A           44 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPA-AIKIHKDGRLFVCYLGDFKSTGGIFAATENGD  122 (333)
T ss_dssp             CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEE-EEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred             CccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcc-eEEECCCCcEEEEeCCCCCCCceEEEEeCCCC
Confidence            5689999999999999876 678999999  56666654 3446778 99999999999998654     799999 444


Q ss_pred             -cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEE
Q 017371          148 -VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVAL  226 (372)
Q Consensus       148 -~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~  226 (372)
                       .+.+....  .....+++++++++|++|+++...           ......++|+++|+++++.+.+......++++++
T Consensus       123 ~~~~~~~~~--~~~~~~~~i~~d~~g~l~v~~~~~-----------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~  189 (333)
T 2dg1_A          123 NLQDIIEDL--STAYCIDDMVFDSKGGFYFTDFRG-----------YSTNPLGGVYYVSPDFRTVTPIIQNISVANGIAL  189 (333)
T ss_dssp             SCEEEECSS--SSCCCEEEEEECTTSCEEEEECCC-----------BTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEE
T ss_pred             EEEEEEccC--ccCCcccceEECCCCCEEEEeccc-----------cccCCCceEEEEeCCCCEEEEeecCCCcccceEE
Confidence             54332211  122468899999999999987521           0012357899999987777776666677899999


Q ss_pred             ecCCCEEEEEeCCCCeEEEEEccC--CCCcce--eeeccC-CCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHH
Q 017371          227 SRDEDYVVVCESWKFRCRKYWLKG--ERKGKL--ETFAEN-LPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKH  301 (372)
Q Consensus       227 ~~dg~~l~v~~~~~~~i~~~~~~g--~~~~~~--~~~~~~-~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~  301 (372)
                      ++||+.+|++++..++|++|+++.  ......  ..+... ....|+++++|++|++|+++..                 
T Consensus       190 ~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~-----------------  252 (333)
T 2dg1_A          190 STDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYG-----------------  252 (333)
T ss_dssp             CTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEET-----------------
T ss_pred             CCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcC-----------------
Confidence            999999999998888999999853  221111  111111 1136899999999999999976                 


Q ss_pred             HHHhcCccccccccCCCceEEEEECCCCcEEEEEECCCC--CeeccceeeEEE-C-CEEEEEeCCC-----CeEEEEeC
Q 017371          302 VLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTG--QLMSFVTSGLQV-D-NHLYVISLTS-----NFIGKVQL  371 (372)
Q Consensus       302 ~~~~~p~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g--~~~~~~t~~~~~-~-g~L~igs~~~-----~~i~~~~~  371 (372)
                                       .+.|.+++++|+.+..+..+..  ..+..++++... + ++||+++..+     ..|.++++
T Consensus       253 -----------------~~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~  314 (333)
T 2dg1_A          253 -----------------QGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNG  314 (333)
T ss_dssp             -----------------TTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEEC
T ss_pred             -----------------CCEEEEECCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEec
Confidence                             4689999999999888876532  012245666664 4 6999999874     36766664

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.89  E-value=3.9e-20  Score=167.55  Aligned_cols=230  Identities=17%  Similarity=0.244  Sum_probs=175.7

Q ss_pred             CCCCccEEEcCCCcEEEEe-cCCeEEEEe-CCceEEEEec--CCCcccCeEEcCCCCEEEEeCC-CcEEEEcCCC-cEEE
Q 017371           78 VNHPEDASMDKNGVIYTAT-RDGWIKRLQ-DGTWVNWKFI--DSQTLVGLTSTKEGHLIICDNA-NGLHKVSEDG-VENF  151 (372)
Q Consensus        78 ~~~p~~i~~d~~G~l~v~~-~~g~i~~~~-~g~~~~~~~~--~~~p~~gl~~d~dG~l~v~~~~-~gv~~~~~~g-~~~l  151 (372)
                      ...|++|++|++|.+|+++ .+++|.+++ ++++..+...  ...|. +++++++|++|+++.. .+|.+++.+| ...+
T Consensus        19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~g~l~v~~~~~~~v~~~d~~g~~~~~   97 (300)
T 2qc5_A           19 DSGPYGITSSEDGKVWFTQHKANKISSLDQSGRIKEFEVPTPDAKVM-CLIVSSLGDIWFTENGANKIGKLSKKGGFTEY   97 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEE-EEEECTTSCEEEEETTTTEEEEECTTSCEEEE
T ss_pred             CCCcceeeECCCCCEEEEcCCCCeEEEECCCCceEEEECCCCCCcce-eEEECCCCCEEEEecCCCeEEEECCCCCeEEe
Confidence            5789999999999999999 578999999 7666665432  35688 9999999999999874 5699999557 5443


Q ss_pred             eeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEe--CCccCcceEEEecC
Q 017371          152 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA--DGFYFANGVALSRD  229 (372)
Q Consensus       152 ~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~--~~~~~~~gi~~~~d  229 (372)
                      ...  . ....+.+++++++|++|+++.                 ..++|+++|++ ++...+.  .....|++++++++
T Consensus        98 ~~~--~-~~~~~~~i~~~~~g~l~v~~~-----------------~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~  156 (300)
T 2qc5_A           98 PLP--Q-PDSGPYGITEGLNGDIWFTQL-----------------NGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSD  156 (300)
T ss_dssp             ECS--S-TTCCEEEEEECSTTCEEEEET-----------------TTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTT
T ss_pred             cCC--C-CCCCCccceECCCCCEEEEcc-----------------CCCeEEEECCC-CCEEEccCCCCCCCceeEEECCC
Confidence            221  1 124688999999999999865                 35789999998 7665442  23567899999999


Q ss_pred             CCEEEEEeCCCCeEEEEEccCCCCcceeeec-cCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCc
Q 017371          230 EDYVVVCESWKFRCRKYWLKGERKGKLETFA-ENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPK  308 (372)
Q Consensus       230 g~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~-~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~  308 (372)
                      |+ +|+++..+++|++++.++.    ...+. ......|.++++|++|++|+++..                        
T Consensus       157 g~-l~v~~~~~~~i~~~~~~g~----~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~------------------------  207 (300)
T 2qc5_A          157 NA-LWFTENQNNSIGRITNTGK----LEEYPLPTNAAAPVGITSGNDGALWFVEIM------------------------  207 (300)
T ss_dssp             SS-EEEEETTTTEEEEECTTCC----EEEEECSSTTCCEEEEEECTTSSEEEEETT------------------------
T ss_pred             CC-EEEEecCCCeEEEECCCCc----EEEeeCCCCCCCcceEEECCCCCEEEEccC------------------------
Confidence            98 9999988889999987442    22221 122246899999999999999976                        


Q ss_pred             cccccccCCCceEEEEECCCCcEEEEEECCCCCeeccceeeEEE-CCEEEEEeCCCCeEEEEeC
Q 017371          309 LFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL  371 (372)
Q Consensus       309 ~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~L~igs~~~~~i~~~~~  371 (372)
                                .+.|.+++++|+.... ..+.+  ...+.++..+ +|+||+++...+.|.+++.
T Consensus       208 ----------~~~i~~~~~~g~~~~~-~~~~~--~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~  258 (300)
T 2qc5_A          208 ----------GNKIGRITTTGEISEY-DIPTP--NARPHAITAGKNSEIWFTEWGANQIGRITN  258 (300)
T ss_dssp             ----------TTEEEEECTTCCEEEE-ECSST--TCCEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred             ----------CCEEEEEcCCCcEEEE-ECCCC--CCCceEEEECCCCCEEEeccCCCeEEEECC
Confidence                      4589999998877653 33322  3456778877 6899999999999999874

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.88  E-value=4.3e-20  Score=167.29  Aligned_cols=228  Identities=16%  Similarity=0.196  Sum_probs=172.5

Q ss_pred             CCCCccEEEcCCCcEEEEec-CCeEEEEe-CCceEEEEe--cCCCcccCeEEcCCCCEEEEeCC-CcEEEEcCCC-cEEE
Q 017371           78 VNHPEDASMDKNGVIYTATR-DGWIKRLQ-DGTWVNWKF--IDSQTLVGLTSTKEGHLIICDNA-NGLHKVSEDG-VENF  151 (372)
Q Consensus        78 ~~~p~~i~~d~~G~l~v~~~-~g~i~~~~-~g~~~~~~~--~~~~p~~gl~~d~dG~l~v~~~~-~gv~~~~~~g-~~~l  151 (372)
                      ...|.+|++|++|++|+++. +++|++++ +++...+..  ....|. +++++++|+||+++.. .++++++.+| ...+
T Consensus        61 ~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~-~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~  139 (300)
T 2qc5_A           61 DAKVMCLIVSSLGDIWFTENGANKIGKLSKKGGFTEYPLPQPDSGPY-GITEGLNGDIWFTQLNGDRIGKLTADGTIYEY  139 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEE-EEEECSTTCEEEEETTTTEEEEECTTSCEEEE
T ss_pred             CCcceeEEECCCCCEEEEecCCCeEEEECCCCCeEEecCCCCCCCCc-cceECCCCCEEEEccCCCeEEEECCCCCEEEc
Confidence            46899999999999999984 78899999 777765543  235688 9999999999999864 5799999557 5443


Q ss_pred             eeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEe--CCccCcceEEEecC
Q 017371          152 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA--DGFYFANGVALSRD  229 (372)
Q Consensus       152 ~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~--~~~~~~~gi~~~~d  229 (372)
                      ..  +. ....++++++|++|++|+++.                 ..++|+++|+ +++...+.  .....|.+++++++
T Consensus       140 ~~--~~-~~~~~~~i~~d~~g~l~v~~~-----------------~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~  198 (300)
T 2qc5_A          140 DL--PN-KGSYPAFITLGSDNALWFTEN-----------------QNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGND  198 (300)
T ss_dssp             EC--SS-TTCCEEEEEECTTSSEEEEET-----------------TTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTT
T ss_pred             cC--CC-CCCCceeEEECCCCCEEEEec-----------------CCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCC
Confidence            21  11 235788999999999999875                 3578999998 46665543  34567889999999


Q ss_pred             CCEEEEEeCCCCeEEEEEccCCCCcceeee-ccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCc
Q 017371          230 EDYVVVCESWKFRCRKYWLKGERKGKLETF-AENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPK  308 (372)
Q Consensus       230 g~~l~v~~~~~~~i~~~~~~g~~~~~~~~~-~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~  308 (372)
                      |+ +|+++...++|.+++.++.    ...+ .......|.++++|++|++|+++..                        
T Consensus       199 g~-l~v~~~~~~~i~~~~~~g~----~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~------------------------  249 (300)
T 2qc5_A          199 GA-LWFVEIMGNKIGRITTTGE----ISEYDIPTPNARPHAITAGKNSEIWFTEWG------------------------  249 (300)
T ss_dssp             SS-EEEEETTTTEEEEECTTCC----EEEEECSSTTCCEEEEEECSTTCEEEEETT------------------------
T ss_pred             CC-EEEEccCCCEEEEEcCCCc----EEEEECCCCCCCceEEEECCCCCEEEeccC------------------------
Confidence            86 9999988889999987432    2222 1122345889999999999999965                        


Q ss_pred             cccccccCCCceEEEEECCCCcEEEEEECCCCCeeccceeeEEE-CCEEEEEeCCCCeEEEEeC
Q 017371          309 LFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL  371 (372)
Q Consensus       309 ~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~L~igs~~~~~i~~~~~  371 (372)
                                .+.|.+++++|+.. .+..+.+  ...+.++..+ +|+||+++. + .|.+++.
T Consensus       250 ----------~~~i~~~~~~g~~~-~~~~~~~--~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p  298 (300)
T 2qc5_A          250 ----------ANQIGRITNDNTIQ-EYQLQTE--NAEPHGITFGKDGSVWFALK-C-KIGKLNL  298 (300)
T ss_dssp             ----------TTEEEEECTTSCEE-EEECCST--TCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred             ----------CCeEEEECCCCcEE-EEECCcc--CCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence                      46899999988765 4444433  2346777776 689999998 6 9988875

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.88  E-value=1.1e-19  Score=164.51  Aligned_cols=230  Identities=16%  Similarity=0.264  Sum_probs=174.4

Q ss_pred             CCCCccEEEcCCCcEEEEec-CCeEEEEe-CCceEEEEe--cCCCcccCeEEcCCCCEEEEeCC-CcEEEEcCCC-cEEE
Q 017371           78 VNHPEDASMDKNGVIYTATR-DGWIKRLQ-DGTWVNWKF--IDSQTLVGLTSTKEGHLIICDNA-NGLHKVSEDG-VENF  151 (372)
Q Consensus        78 ~~~p~~i~~d~~G~l~v~~~-~g~i~~~~-~g~~~~~~~--~~~~p~~gl~~d~dG~l~v~~~~-~gv~~~~~~g-~~~l  151 (372)
                      ...|++|++|++|++|+++. ++.|.+++ ++++..+..  ....|. +++++++|++|+++.. .++++++.++ .+.+
T Consensus        14 ~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~-~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~   92 (299)
T 2z2n_A           14 DTGPYGITVSDKGKVWITQHKANMISCINLDGKITEYPLPTPDAKVM-CLTISSDGEVWFTENAANKIGRITKKGIIKEY   92 (299)
T ss_dssp             SCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEE-EEEECTTSCEEEEETTTTEEEEECTTSCEEEE
T ss_pred             CCCccceEECCCCCEEEEecCCCcEEEEcCCCCeEEecCCcccCcee-eEEECCCCCEEEeCCCCCeEEEECCCCcEEEE
Confidence            56899999999999999995 78899999 776666543  245688 9999999999999874 5699999657 5544


Q ss_pred             eeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEe--CCccCcceEEEecC
Q 017371          152 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA--DGFYFANGVALSRD  229 (372)
Q Consensus       152 ~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~--~~~~~~~gi~~~~d  229 (372)
                      ...   .....+.+++++++|++|+++.                 ..++|+++|+ +++...+.  .....|++++++++
T Consensus        93 ~~~---~~~~~~~~i~~~~~g~l~v~~~-----------------~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~  151 (299)
T 2z2n_A           93 TLP---NPDSAPYGITEGPNGDIWFTEM-----------------NGNRIGRITD-DGKIREYELPNKGSYPSFITLGSD  151 (299)
T ss_dssp             ECS---STTCCEEEEEECTTSCEEEEET-----------------TTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTT
T ss_pred             eCC---CcCCCceeeEECCCCCEEEEec-----------------CCceEEEECC-CCCEEEecCCCCCCCCceEEEcCC
Confidence            321   1234688999999999999865                 3578999999 56666543  23567899999999


Q ss_pred             CCEEEEEeCCCCeEEEEEccCCCCcceeee-ccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCc
Q 017371          230 EDYVVVCESWKFRCRKYWLKGERKGKLETF-AENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPK  308 (372)
Q Consensus       230 g~~l~v~~~~~~~i~~~~~~g~~~~~~~~~-~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~  308 (372)
                      |+ +|+++...++|++++.++ +   ...+ .......|.++++|++|++|+++..                        
T Consensus       152 g~-l~v~~~~~~~i~~~~~~g-~---~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~------------------------  202 (299)
T 2z2n_A          152 NA-LWFTENQNNAIGRITESG-D---ITEFKIPTPASGPVGITKGNDDALWFVEII------------------------  202 (299)
T ss_dssp             SC-EEEEETTTTEEEEECTTC-C---EEEEECSSTTCCEEEEEECTTSSEEEEETT------------------------
T ss_pred             CC-EEEEeCCCCEEEEEcCCC-c---EEEeeCCCCCCcceeEEECCCCCEEEEccC------------------------
Confidence            86 999998888999998733 2   2222 1122235889999999999999975                        


Q ss_pred             cccccccCCCceEEEEECCCCcEEEEEECCCCCeeccceeeEEE-CCEEEEEeCCCCeEEEEeC
Q 017371          309 LFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL  371 (372)
Q Consensus       309 ~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~L~igs~~~~~i~~~~~  371 (372)
                                .+.|.+++++|+... +..+..  ...+.++.++ +|+||+++...+.|.+++.
T Consensus       203 ----------~~~i~~~~~~g~~~~-~~~~~~--~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~  253 (299)
T 2z2n_A          203 ----------GNKIGRITTSGEITE-FKIPTP--NARPHAITAGAGIDLWFTEWGANKIGRLTS  253 (299)
T ss_dssp             ----------TTEEEEECTTCCEEE-EECSST--TCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred             ----------CceEEEECCCCcEEE-EECCCC--CCCceeEEECCCCCEEEeccCCceEEEECC
Confidence                      458999999877654 444322  3457788876 6899999998999999875

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.88  E-value=9.3e-20  Score=164.98  Aligned_cols=229  Identities=14%  Similarity=0.198  Sum_probs=172.0

Q ss_pred             CCCCccEEEcCCCcEEEEec-CCeEEEEe-CCceEEEEe--cCCCcccCeEEcCCCCEEEEeCC-CcEEEEcCCC-cEEE
Q 017371           78 VNHPEDASMDKNGVIYTATR-DGWIKRLQ-DGTWVNWKF--IDSQTLVGLTSTKEGHLIICDNA-NGLHKVSEDG-VENF  151 (372)
Q Consensus        78 ~~~p~~i~~d~~G~l~v~~~-~g~i~~~~-~g~~~~~~~--~~~~p~~gl~~d~dG~l~v~~~~-~gv~~~~~~g-~~~l  151 (372)
                      ...|.+|++|++|.+|+++. +++|++++ +++.+.+..  ....|. +++++++|+||+++.. .++++++.+| ...+
T Consensus        56 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~-~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~  134 (299)
T 2z2n_A           56 DAKVMCLTISSDGEVWFTENAANKIGRITKKGIIKEYTLPNPDSAPY-GITEGPNGDIWFTEMNGNRIGRITDDGKIREY  134 (299)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEE-EEEECTTSCEEEEETTTTEEEEECTTCCEEEE
T ss_pred             cCceeeEEECCCCCEEEeCCCCCeEEEECCCCcEEEEeCCCcCCCce-eeEECCCCCEEEEecCCceEEEECCCCCEEEe
Confidence            35799999999999999984 78899999 777766653  345788 9999999999999864 5799999766 5443


Q ss_pred             eeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEe--CCccCcceEEEecC
Q 017371          152 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA--DGFYFANGVALSRD  229 (372)
Q Consensus       152 ~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~--~~~~~~~gi~~~~d  229 (372)
                      ...   .....+++++++++|++|+++.                 ..++|+++|+ +++++.+.  .....|.+++++++
T Consensus       135 ~~~---~~~~~~~~i~~~~~g~l~v~~~-----------------~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~  193 (299)
T 2z2n_A          135 ELP---NKGSYPSFITLGSDNALWFTEN-----------------QNNAIGRITE-SGDITEFKIPTPASGPVGITKGND  193 (299)
T ss_dssp             ECS---STTCCEEEEEECTTSCEEEEET-----------------TTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTT
T ss_pred             cCC---CCCCCCceEEEcCCCCEEEEeC-----------------CCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCC
Confidence            221   1234688999999999999864                 3578999999 67776542  34567889999999


Q ss_pred             CCEEEEEeCCCCeEEEEEccCCCCcceeee-ccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCc
Q 017371          230 EDYVVVCESWKFRCRKYWLKGERKGKLETF-AENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPK  308 (372)
Q Consensus       230 g~~l~v~~~~~~~i~~~~~~g~~~~~~~~~-~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~  308 (372)
                      |+ +|+++...++|.+++.++ +   ...+ .......|.++++|++|++|+++..                        
T Consensus       194 g~-l~v~~~~~~~i~~~~~~g-~---~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~------------------------  244 (299)
T 2z2n_A          194 DA-LWFVEIIGNKIGRITTSG-E---ITEFKIPTPNARPHAITAGAGIDLWFTEWG------------------------  244 (299)
T ss_dssp             SS-EEEEETTTTEEEEECTTC-C---EEEEECSSTTCCEEEEEECSTTCEEEEETT------------------------
T ss_pred             CC-EEEEccCCceEEEECCCC-c---EEEEECCCCCCCceeEEECCCCCEEEeccC------------------------
Confidence            87 999998888999999833 2   2222 1112246889999999999999865                        


Q ss_pred             cccccccCCCceEEEEECCCCcEEEEEECCCCCeeccceeeEEECCEEEEEeCCCCeEEEEeC
Q 017371          309 LFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL  371 (372)
Q Consensus       309 ~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~igs~~~~~i~~~~~  371 (372)
                                .+.|.+++++|+. ..+..+.+  ...+.++.+.+|+||+++. .+.|.+++.
T Consensus       245 ----------~~~i~~~d~~g~~-~~~~~~~~--~~~~~~i~~~~g~l~v~~~-~~~l~~~~~  293 (299)
T 2z2n_A          245 ----------ANKIGRLTSNNII-EEYPIQIK--SAEPHGICFDGETIWFAME-CDKIGKLTL  293 (299)
T ss_dssp             ----------TTEEEEEETTTEE-EEEECSSS--SCCEEEEEECSSCEEEEET-TTEEEEEEE
T ss_pred             ----------CceEEEECCCCce-EEEeCCCC--CCccceEEecCCCEEEEec-CCcEEEEEc
Confidence                      4689999988764 44544432  2345666666699999987 688988874

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.87  E-value=2.3e-20  Score=172.88  Aligned_cols=241  Identities=13%  Similarity=0.129  Sum_probs=169.3

Q ss_pred             CCCCCCccEEEcCCCcEEEEecCC-------------------------eEEEEe--CCceEEEEe--cCCCcccCeEEc
Q 017371           76 GSVNHPEDASMDKNGVIYTATRDG-------------------------WIKRLQ--DGTWVNWKF--IDSQTLVGLTST  126 (372)
Q Consensus        76 g~~~~p~~i~~d~~G~l~v~~~~g-------------------------~i~~~~--~g~~~~~~~--~~~~p~~gl~~d  126 (372)
                      ..+..|.+|++|++|++|+++..+                         .|++++  +|++.....  ....|. +++++
T Consensus        21 ~~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~-gia~d   99 (329)
T 3fvz_A           21 LLPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPH-GLSID   99 (329)
T ss_dssp             CCCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEE-EEEEC
T ss_pred             eecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCce-EEEEC
Confidence            346789999999999999998433                         699998  477654322  234789 99999


Q ss_pred             CCCCEEEEeCC-CcEEEEcCCC-c---EEEeee-cC---CcccccccceEEcc-CCcEEEEeCCCCCCCccccccccccc
Q 017371          127 KEGHLIICDNA-NGLHKVSEDG-V---ENFLSY-VN---GSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGK  196 (372)
Q Consensus       127 ~dG~l~v~~~~-~gv~~~~~~g-~---~~l~~~-~~---~~~~~~~~~l~~d~-dG~i~vtd~~~~~~~~~~~~~~~~~~  196 (372)
                      ++|+|||++.. ..|.+++.+| .   ..+... ..   ...+..|++|++++ +|+||++|..                
T Consensus       100 ~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~----------------  163 (329)
T 3fvz_A          100 TDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGY----------------  163 (329)
T ss_dssp             TTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECS----------------
T ss_pred             CCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCC----------------
Confidence            99999999876 5688898655 2   222211 01   12355789999999 8999999851                


Q ss_pred             CCCeEEEEeCCCCeEEEEeC-----------CccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeecc-CCC
Q 017371          197 PHGQLLKYDPSSNITTLVAD-----------GFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAE-NLP  264 (372)
Q Consensus       197 ~~g~v~~~d~~t~~~~~~~~-----------~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~-~~~  264 (372)
                      ..++|+++|++ ++......           .+..|++++++++++.+||++..+++|.+|+.++.+.  ...+.. ...
T Consensus       164 ~~~~I~~~~~~-g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~--~~~~~~~~~~  240 (329)
T 3fvz_A          164 CNSRIVQFSPS-GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEF--VREIKHASFG  240 (329)
T ss_dssp             SCCEEEEECTT-SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE--EEEECCTTTT
T ss_pred             CCCeEEEEcCC-CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcE--EEEEeccccC
Confidence            36789999976 54443321           3456999999999777999999999999999872221  112211 111


Q ss_pred             CCCceeEEcC------CCCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEEC-CCCcEEEEEEC
Q 017371          265 GAPDNINLAP------DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVA-EDGTIIRNLVD  337 (372)
Q Consensus       265 g~p~~i~~d~------~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~-~~g~~~~~~~~  337 (372)
                      ..|.++++.+      +|++|+++..                                  ...+..++ .+|+.+..+..
T Consensus       241 ~~~~~~~~~pg~~~~~~g~~~v~~~~----------------------------------~~~v~~~~~~~g~~~~~~~~  286 (329)
T 3fvz_A          241 RNVFAISYIPGFLFAVNGKPYFGDQE----------------------------------PVQGFVMNFSSGEIIDVFKP  286 (329)
T ss_dssp             TCEEEEEEETTEEEEEECCCCTTCSC----------------------------------CCCEEEEETTTCCEEEEECC
T ss_pred             CCcceeeecCCEEEEeCCCEEeccCC----------------------------------CcEEEEEEcCCCeEEEEEcC
Confidence            2244444444      5555555443                                  44677777 67999888764


Q ss_pred             CCCCeeccceeeEEE-CCEEEEEeCCCCeEEEEeC
Q 017371          338 PTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL  371 (372)
Q Consensus       338 ~~g~~~~~~t~~~~~-~g~L~igs~~~~~i~~~~~  371 (372)
                      ..+. +..+.++..+ +|+||+++..++.|.++++
T Consensus       287 ~~~~-~~~p~~ia~~~dG~lyvad~~~~~I~~~~~  320 (329)
T 3fvz_A          287 VRKH-FDMPHDIVASEDGTVYIGDAHTNTVWKFTL  320 (329)
T ss_dssp             SSSC-CSSEEEEEECTTSEEEEEESSSCCEEEEEE
T ss_pred             CCCc-cCCeeEEEECCCCCEEEEECCCCEEEEEeC
Confidence            3332 6678888887 5899999999999999985

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.86  E-value=5.1e-20  Score=171.67  Aligned_cols=243  Identities=14%  Similarity=0.144  Sum_probs=169.2

Q ss_pred             ceEecCCCCCCCccEEEcCCCcEEEEec---CC--eEEEEeCCceEEEEe-------cCCCcccCeEEcCCCCEEEEeCC
Q 017371           70 FIKVGEGSVNHPEDASMDKNGVIYTATR---DG--WIKRLQDGTWVNWKF-------IDSQTLVGLTSTKEGHLIICDNA  137 (372)
Q Consensus        70 ~~~~~~g~~~~p~~i~~d~~G~l~v~~~---~g--~i~~~~~g~~~~~~~-------~~~~p~~gl~~d~dG~l~v~~~~  137 (372)
                      ++.+.... ..|++|+++++|++|++..   +|  +|+.+++|++..+..       ....|. ++++|++|+|||++..
T Consensus         9 ~~~v~~~~-~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~-gv~~d~~g~L~v~D~g   86 (343)
T 2qe8_A            9 LEVVAELS-LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVL-GIKSDGNGIVWMLDNG   86 (343)
T ss_dssp             CEEEEEES-SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEE-EEEECSSSEEEEEECH
T ss_pred             eEEEEEcC-CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEee-EEEEcCCCcEEEEcCC
Confidence            34444332 5899999999999999962   34  788887665543321       124688 9999999999999864


Q ss_pred             ------CcEEEEc-CCC--cEEEeee-cCCcccccccceEEcc-CCcEEEEeCCCCCCCcccccccccccCCCeEEEEeC
Q 017371          138 ------NGLHKVS-EDG--VENFLSY-VNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDP  206 (372)
Q Consensus       138 ------~gv~~~~-~~g--~~~l~~~-~~~~~~~~~~~l~~d~-dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~  206 (372)
                            ..|+++| .+|  ...+... .......+++++++|+ +|.+|++|.+.              ...++|+++|+
T Consensus        87 ~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~--------------~~~~~i~v~d~  152 (343)
T 2qe8_A           87 NQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAP--------------DDKAALIRVDL  152 (343)
T ss_dssp             HHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCS--------------GGGCEEEEEET
T ss_pred             CCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCcc--------------CCCCeEEEEEC
Confidence                  5799999 667  3333221 1122335789999996 57999998631              12456778887


Q ss_pred             CCCeEEEEeCC------------------------------ccCcceEEEecCCCEEEEEeCCCCeEEEEEcc---CCCC
Q 017371          207 SSNITTLVADG------------------------------FYFANGVALSRDEDYVVVCESWKFRCRKYWLK---GERK  253 (372)
Q Consensus       207 ~t~~~~~~~~~------------------------------~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~---g~~~  253 (372)
                      ++++...+..+                              ...++|+++++||+.||++++...+|++++.+   ....
T Consensus       153 ~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~  232 (343)
T 2qe8_A          153 QTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQL  232 (343)
T ss_dssp             TTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTC
T ss_pred             CCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCC
Confidence            76665544321                              02479999999999999999988899999853   1111


Q ss_pred             cceeeec----cCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEECC-C
Q 017371          254 GKLETFA----ENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-D  328 (372)
Q Consensus       254 ~~~~~~~----~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~-~  328 (372)
                      ...+.+.    ....+.|+++++|++|++|++...                                  .+.|.++++ +
T Consensus       233 ~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~----------------------------------~~~V~~~d~~~  278 (343)
T 2qe8_A          233 TDAELGSKIERYSEKPICDGISIDKDHNIYVGDLA----------------------------------HSAIGVITSAD  278 (343)
T ss_dssp             CHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGG----------------------------------GTEEEEEETTT
T ss_pred             ChhhhhcceEecccCCCCceEEECCCCCEEEEccC----------------------------------CCeEEEEECCC
Confidence            1111110    012347999999999999999987                                  578999998 8


Q ss_pred             CcEEEEEECCCCCeeccceeeEEE-CCEEEEEeCCCCe
Q 017371          329 GTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNF  365 (372)
Q Consensus       329 g~~~~~~~~~~g~~~~~~t~~~~~-~g~L~igs~~~~~  365 (372)
                      |+.......+   .+..++++.++ +++||+.+...+.
T Consensus       279 G~~~~~~~~~---~~~~p~~va~~~~g~l~v~~~~~~~  313 (343)
T 2qe8_A          279 RAYKLLVTDE---KLSWTDSFNFGSDGYLYFDCNQLHH  313 (343)
T ss_dssp             TEEEEEEECG---GGSCEEEEEECTTSCEEEEECCGGG
T ss_pred             CCEEEEEECC---ceecCCeeEECCCCcEEEEeCcccc
Confidence            9876555544   25578888886 6899999875543

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=99.84  E-value=6.2e-19  Score=165.01  Aligned_cols=258  Identities=15%  Similarity=0.174  Sum_probs=172.6

Q ss_pred             CceEecCCCCCCCccEEEcCCCcEEEEecCCeEEEEe-CCceEEEEe------cCCCcccCeEEcCC----CCEEEEeCC
Q 017371           69 DFIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQ-DGTWVNWKF------IDSQTLVGLTSTKE----GHLIICDNA  137 (372)
Q Consensus        69 ~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~g~i~~~~-~g~~~~~~~------~~~~p~~gl~~d~d----G~l~v~~~~  137 (372)
                      .++++..+ +..|++|+++++|+||+++..|+|++++ +|+ +.+..      ..+.|+ ||+++++    |.|||+...
T Consensus        20 ~~~~va~~-l~~P~~ia~~pdG~l~V~e~~g~I~~~d~~G~-~~~~~~~v~~~g~~g~~-gia~~pdf~~~g~lyv~~~~   96 (354)
T 3a9g_A           20 KISEVASD-LEVPWSIAPLGGGRYLVTERPGRLVLISPSGK-KLVASFDVANVGEAGLL-GLALHPEFPKKSWVYLYASY   96 (354)
T ss_dssp             EEEEEECS-CSCEEEEEEEETTEEEEEETTTEEEEECSSCE-EEEEECCCCCSTTCSEE-EEEECTTTTTSCEEEEEEEE
T ss_pred             EEEEEeCC-CCCCeEEEEcCCCeEEEEeCCCEEEEEeCCCc-eEeeccceeecCCCcee-eEEeCCCCCcCCEEEEEEec
Confidence            46677766 8899999999999999999889999998 776 54432      235688 9999986    899999763


Q ss_pred             --------CcEEEEc-CCC------cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEE
Q 017371          138 --------NGLHKVS-EDG------VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLL  202 (372)
Q Consensus       138 --------~gv~~~~-~~g------~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~  202 (372)
                              ..|.+++ ..+      .+.+....+....+.+++|++++||+||+++.....  ...  ........|+|+
T Consensus        97 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~--~~~--~~d~~~~~G~I~  172 (354)
T 3a9g_A           97 FAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAAD--PRL--AQDLSSLAGKIL  172 (354)
T ss_dssp             ECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTC--GGG--GTCTTCCSSEEE
T ss_pred             cCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCC--Ccc--ccCCCCCCeEEE
Confidence                    5688888 322      233333334444567899999999999999643110  000  001123468999


Q ss_pred             EEeCCCC--------eEEEEeCCccCcceEEEecCCCEEEEEeCCCCe---EEEEEccCCCCc------------ceeee
Q 017371          203 KYDPSSN--------ITTLVADGFYFANGVALSRDEDYVVVCESWKFR---CRKYWLKGERKG------------KLETF  259 (372)
Q Consensus       203 ~~d~~t~--------~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~---i~~~~~~g~~~~------------~~~~~  259 (372)
                      |+++++.        ..+++..++.+|+|++++++...||+++.+.++   |.++.. |...+            .....
T Consensus       173 ri~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~-G~nyGwp~~~g~~~~~~~~~p~  251 (354)
T 3a9g_A          173 RVDEEGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILK-GGNYGWPLATGKAGRGEFVDPV  251 (354)
T ss_dssp             EECTTSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECT-TCBCCTTTCCSCCCCTTSCCCS
T ss_pred             EEcCCCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecC-CCcCCCCcccCCCCCCCCcCCE
Confidence            9999843        356788899999999999954459999987754   555432 22111            00011


Q ss_pred             cc--CCCCCCceeEE-------cCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEECCC--
Q 017371          260 AE--NLPGAPDNINL-------APDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED--  328 (372)
Q Consensus       260 ~~--~~~g~p~~i~~-------d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~--  328 (372)
                      ..  .....|.++++       +.+|++|+++..                                  .+.|.+++.+  
T Consensus       252 ~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~----------------------------------~~~v~~~~~~~~  297 (354)
T 3a9g_A          252 IDTGSETWAPSGASFVHGDMFPGLRGWLLIACLR----------------------------------GSMLAAVNFGDN  297 (354)
T ss_dssp             EECTTCCCCEEEEEECCSSSCGGGTTEEEEEETT----------------------------------TTEEEEEEECGG
T ss_pred             eecCCCCcCCcceEEECCCCCcccCCcEEEEEcC----------------------------------CCEEEEEEECCC
Confidence            00  11235889998       578999999876                                  4567777654  


Q ss_pred             CcEE--EEEECCCCCeeccceeeEEE-CCEEEEEeCC-CC---------eEEEEeC
Q 017371          329 GTII--RNLVDPTGQLMSFVTSGLQV-DNHLYVISLT-SN---------FIGKVQL  371 (372)
Q Consensus       329 g~~~--~~~~~~~g~~~~~~t~~~~~-~g~L~igs~~-~~---------~i~~~~~  371 (372)
                      |+..  ..+-.  +. ...+..+.+. +|.||+.+.. ..         .|.|+..
T Consensus       298 g~~~~~~~~~~--~~-~~rp~~v~~~pDG~lyv~~~~~~G~g~~~~~~g~i~ri~~  350 (354)
T 3a9g_A          298 MEVRKISTFFK--NV-FGRLRDVVIDDDGGILISTSNRDGRGSLRAGDDKILKIVS  350 (354)
T ss_dssp             GCEEEEEEECT--TT-SCCEEEEEECTTSCEEEEECTTSSSSCCCTTCSCEEEEEE
T ss_pred             Ccccceeeecc--CC-CCCeeEEEECCCCcEEEEEeCCCCCcCCCCCCCEEEEEec
Confidence            4443  22221  11 2346778876 6899999974 22         7888863

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=99.84  E-value=1.4e-18  Score=167.47  Aligned_cols=239  Identities=11%  Similarity=0.112  Sum_probs=175.8

Q ss_pred             CCCCCCccEEEcC--CCcEEEEec-CCeEEEEe--CCceEEEEecC----CCcccCeEE-------cCCCC-EEEEeCCC
Q 017371           76 GSVNHPEDASMDK--NGVIYTATR-DGWIKRLQ--DGTWVNWKFID----SQTLVGLTS-------TKEGH-LIICDNAN  138 (372)
Q Consensus        76 g~~~~p~~i~~d~--~G~l~v~~~-~g~i~~~~--~g~~~~~~~~~----~~p~~gl~~-------d~dG~-l~v~~~~~  138 (372)
                      +.+..|..|++||  +++||++.. .++|.++|  ++.+..+....    .+|. +|++       +++|+ |||++...
T Consensus       136 ~~~~~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~-~ia~~~~~~~~d~~G~~lyvad~~~  214 (496)
T 3kya_A          136 CGFSDNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIR-SIAFNKKIEGYADEAEYMIVAIDYD  214 (496)
T ss_dssp             BCCCSEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEE-EEEECCCBTTTBCTTCEEEEEECCC
T ss_pred             cccCCCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCc-EEEEeecccccCCCCCEEEEEeCCC
Confidence            3466799999997  579999984 57899999  55777765432    3688 9999       99997 99998653


Q ss_pred             -------cEEEEc--CCC-c------EEEeeecCCcccccccceEEcc-CCcEEEEeCCCCCCCcccccccccccCCCeE
Q 017371          139 -------GLHKVS--EDG-V------ENFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQL  201 (372)
Q Consensus       139 -------gv~~~~--~~g-~------~~l~~~~~~~~~~~~~~l~~d~-dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v  201 (372)
                             .++.++  .+| +      ..+.      ....|+++++++ +|.||+++.                 ..++|
T Consensus       215 ~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~------~~~~p~giavdp~~g~LYvtd~-----------------~~g~V  271 (496)
T 3kya_A          215 GKGDESPSVYIIKRNADGTFDDRSDIQLIA------AYKQCNGATIHPINGELYFNSY-----------------EKGQV  271 (496)
T ss_dssp             TTGGGEEEEEEEECCTTSCCSTTSCEEEEE------EESCCCCEEECTTTCCEEEEET-----------------TTTEE
T ss_pred             CCcccCceEEEEecCCCCceeecccceeec------cCCCceEEEEcCCCCeEEEEEC-----------------CCCEE
Confidence                   377776  335 3      2332      235789999999 689999986                 56789


Q ss_pred             EEEeCC-------CCeE------------EEEe--CCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCC--Ccceee
Q 017371          202 LKYDPS-------SNIT------------TLVA--DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGER--KGKLET  258 (372)
Q Consensus       202 ~~~d~~-------t~~~------------~~~~--~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~--~~~~~~  258 (372)
                      ++||++       +++.            +.+.  .....|.+++++++|+.||++++.+++|++++.++..  ......
T Consensus       272 ~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~  351 (496)
T 3kya_A          272 FRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYN  351 (496)
T ss_dssp             EEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEE
T ss_pred             EEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEE
Confidence            999987       5654            1221  2235578999999999999999999999999887632  111122


Q ss_pred             eccC--CC------------CCCc-eeEEc-------CCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccC
Q 017371          259 FAEN--LP------------GAPD-NINLA-------PDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITL  316 (372)
Q Consensus       259 ~~~~--~~------------g~p~-~i~~d-------~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~  316 (372)
                      +...  ..            ..|. ++++|       ++|+|||++..                                
T Consensus       352 ~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~--------------------------------  399 (496)
T 3kya_A          352 FVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRL--------------------------------  399 (496)
T ss_dssp             EEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGG--------------------------------
T ss_pred             ecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECC--------------------------------
Confidence            2211  11            2477 78887       78999999988                                


Q ss_pred             CCceEEEEECCCCcEEEEEECC--------------CC-----CeeccceeeEEE-C-CEEEEEeCCCCeEEEEeCC
Q 017371          317 GGGAHLIHVAEDGTIIRNLVDP--------------TG-----QLMSFVTSGLQV-D-NHLYVISLTSNFIGKVQLS  372 (372)
Q Consensus       317 ~~~~~v~~~~~~g~~~~~~~~~--------------~g-----~~~~~~t~~~~~-~-g~L~igs~~~~~i~~~~~~  372 (372)
                        +.+|.+++++|.+.......              +|     ..++.+++++.+ + |+|||++..+++|.+++++
T Consensus       400 --N~rIr~i~~~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~  474 (496)
T 3kya_A          400 --NFCVRKVTPEGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISME  474 (496)
T ss_dssp             --GTEEEEECTTCBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             --CCEEEEEeCCCCEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECC
Confidence              67999999999776554431              22     136778899988 3 8999999999999999864

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.83  E-value=5e-18  Score=158.66  Aligned_cols=227  Identities=12%  Similarity=0.105  Sum_probs=171.5

Q ss_pred             CccEEEcCCCcEEEEecCCeEEEEe-CC-ceEEEEecCCCcccCeEEc-CCCCEEEEeCC-CcEEEEcCCC--cEEEeee
Q 017371           81 PEDASMDKNGVIYTATRDGWIKRLQ-DG-TWVNWKFIDSQTLVGLTST-KEGHLIICDNA-NGLHKVSEDG--VENFLSY  154 (372)
Q Consensus        81 p~~i~~d~~G~l~v~~~~g~i~~~~-~g-~~~~~~~~~~~p~~gl~~d-~dG~l~v~~~~-~gv~~~~~~g--~~~l~~~  154 (372)
                      -.+.+.++++.|++++.. .|.+++ ++ ..+.+......|. ++++| .++.||++|.. ..|++++.+|  .+.+...
T Consensus        36 ~~C~~~~~~~~ll~~~~~-~I~~i~~~g~~~~~~~~~~~~~~-~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~  113 (349)
T 3v64_C           36 RSCKALGPEPVLLFANRI-DIRQVLPHRSEYTLLLNNLENAI-ALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST  113 (349)
T ss_dssp             SCEEESSSCCEEEEECBS-CEEEECTTSCCEEEEECSCSCEE-EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS
T ss_pred             CcccccccCceeEeeccc-ceEEEeCCCCeeEEeecCCCceE-EEEEeccccEEEEEeccCCceEEEecCCCCceEEEeC
Confidence            345666677788888644 599999 55 4555666677899 99999 56789999876 4588898555  4444321


Q ss_pred             cCCcccccccceEEcc-CCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEe-CCccCcceEEEecCCCE
Q 017371          155 VNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDEDY  232 (372)
Q Consensus       155 ~~~~~~~~~~~l~~d~-dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~-~~~~~~~gi~~~~dg~~  232 (372)
                          .+..|.+|++|. +|+||++|.                 ..++|.++++++...+.+. .++..|++++++|+++.
T Consensus       114 ----~~~~p~glavd~~~g~ly~~d~-----------------~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~  172 (349)
T 3v64_C          114 ----GLESPGGLAVDWVHDKLYWTDS-----------------GTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGT  172 (349)
T ss_dssp             ----SCSCCCEEEEETTTTEEEEEET-----------------TTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTE
T ss_pred             ----CCCCccEEEEecCCCeEEEEcC-----------------CCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCe
Confidence                234688999996 689999987                 3568999998855545444 56889999999998889


Q ss_pred             EEEEeCCC-CeEEEEEccCCCCcceeeeccCCCCCCceeEEcC-CCCEEEEEecCchhHHHHhhcchhHHHHHHhcCccc
Q 017371          233 VVVCESWK-FRCRKYWLKGERKGKLETFAENLPGAPDNINLAP-DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLF  310 (372)
Q Consensus       233 l~v~~~~~-~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~-~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~  310 (372)
                      +||+++.. .+|++++++|..   ...+.......|++|++|+ +|+||+++..                          
T Consensus       173 ly~td~~~~~~I~r~~~dG~~---~~~~~~~~~~~PnGla~d~~~~~lY~aD~~--------------------------  223 (349)
T 3v64_C          173 IYWTDWGNTPRIEASSMDGSG---RRIIADTHLFWPNGLTIDYAGRRMYWVDAK--------------------------  223 (349)
T ss_dssp             EEEEECSSSCEEEEEETTSCS---CEESCCSSCSCEEEEEEETTTTEEEEEETT--------------------------
T ss_pred             EEEeccCCCCEEEEEeCCCCC---cEEEEECCCCCcceEEEeCCCCEEEEEECC--------------------------
Confidence            99999988 999999998742   2233322334699999995 6789999987                          


Q ss_pred             cccccCCCceEEEEECCCCcEEEEEECCCCCeeccceeeEEECCEEEEEeCCCCeEEEEe
Q 017371          311 SQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQ  370 (372)
Q Consensus       311 ~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~igs~~~~~i~~~~  370 (372)
                              .+.|.+++.+|.....+-...   +..+.++..++++||+++..++.|.+++
T Consensus       224 --------~~~I~~~~~dG~~~~~~~~~~---~~~P~giav~~~~ly~td~~~~~V~~~~  272 (349)
T 3v64_C          224 --------HHVIERANLDGSHRKAVISQG---LPHPFAITVFEDSLYWTDWHTKSINSAN  272 (349)
T ss_dssp             --------TTEEEEEETTSCSCEEEECSS---CSSEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred             --------CCEEEEEeCCCCceEEEEeCC---CCCceEEEEECCEEEEecCCCCeEEEEE
Confidence                    568999998886554443322   4467788888899999999999999986

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.82  E-value=4.2e-18  Score=159.18  Aligned_cols=201  Identities=11%  Similarity=0.121  Sum_probs=153.1

Q ss_pred             CCCCccEEEc-CCCcEEEEe-cCCeEEEEe-CC-ceEEEE-ecCCCcccCeEEcC-CCCEEEEeCC-CcEEEEcCCC--c
Q 017371           78 VNHPEDASMD-KNGVIYTAT-RDGWIKRLQ-DG-TWVNWK-FIDSQTLVGLTSTK-EGHLIICDNA-NGLHKVSEDG--V  148 (372)
Q Consensus        78 ~~~p~~i~~d-~~G~l~v~~-~~g~i~~~~-~g-~~~~~~-~~~~~p~~gl~~d~-dG~l~v~~~~-~gv~~~~~~g--~  148 (372)
                      +..|.++++| .++.||+++ .+++|++++ +| ..+.+. .....|. ||++|+ .|+||+++.. ..|.+++.+|  .
T Consensus        72 ~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~-glavd~~~g~ly~~d~~~~~I~~~~~dG~~~  150 (349)
T 3v64_C           72 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPG-GLAVDWVHDKLYWTDSGTSRIEVANLDGAHR  150 (349)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCC-EEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCcc-EEEEecCCCeEEEEcCCCCeEEEEcCCCCce
Confidence            5789999999 578999999 688999999 55 344443 3346788 999995 6789999976 4688888666  4


Q ss_pred             EEEeeecCCcccccccceEEcc-CCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEe-CCccCcceEEE
Q 017371          149 ENFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVAL  226 (372)
Q Consensus       149 ~~l~~~~~~~~~~~~~~l~~d~-dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~-~~~~~~~gi~~  226 (372)
                      +.+..    ..+..|++|++|+ +|.||++|..                ..++|++++.++...+.+. .++..|+|+++
T Consensus       151 ~~l~~----~~l~~P~~iavdp~~g~ly~td~~----------------~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~  210 (349)
T 3v64_C          151 KVLLW----QSLEKPRAIALHPMEGTIYWTDWG----------------NTPRIEASSMDGSGRRIIADTHLFWPNGLTI  210 (349)
T ss_dssp             EEEEC----TTCSCEEEEEEETTTTEEEEEECS----------------SSCEEEEEETTSCSCEESCCSSCSCEEEEEE
T ss_pred             EEEEe----CCCCCcceEEEecCcCeEEEeccC----------------CCCEEEEEeCCCCCcEEEEECCCCCcceEEE
Confidence            44432    1245789999997 6799999863                2378999999855555443 56888999999


Q ss_pred             ecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhc
Q 017371          227 SRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAY  306 (372)
Q Consensus       227 ~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~  306 (372)
                      +++++.|||+++..++|++++++|..   ...+.....+.|++|+++ +|++|++++.                      
T Consensus       211 d~~~~~lY~aD~~~~~I~~~~~dG~~---~~~~~~~~~~~P~giav~-~~~ly~td~~----------------------  264 (349)
T 3v64_C          211 DYAGRRMYWVDAKHHVIERANLDGSH---RKAVISQGLPHPFAITVF-EDSLYWTDWH----------------------  264 (349)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTSCS---CEEEECSSCSSEEEEEEE-TTEEEEEETT----------------------
T ss_pred             eCCCCEEEEEECCCCEEEEEeCCCCc---eEEEEeCCCCCceEEEEE-CCEEEEecCC----------------------
Confidence            99988999999999999999998742   223333334579999995 5789999987                      


Q ss_pred             CccccccccCCCceEEEEEC-CCCcEEEEEEC
Q 017371          307 PKLFSQFITLGGGAHLIHVA-EDGTIIRNLVD  337 (372)
Q Consensus       307 p~~~~~~~~~~~~~~v~~~~-~~g~~~~~~~~  337 (372)
                                  .+.|.+++ .+|+....+..
T Consensus       265 ------------~~~V~~~~~~~G~~~~~i~~  284 (349)
T 3v64_C          265 ------------TKSINSANKFTGKNQEIIRN  284 (349)
T ss_dssp             ------------TTEEEEEETTTCCSCEEEEC
T ss_pred             ------------CCeEEEEEccCCCccEEecc
Confidence                        56889998 67877666653

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.81  E-value=1.2e-17  Score=158.11  Aligned_cols=228  Identities=12%  Similarity=0.112  Sum_probs=172.0

Q ss_pred             CCccEEEcCCCcEEEEecCCeEEEEe-C-CceEEEEecCCCcccCeEEc-CCCCEEEEeCC-CcEEEEcCCC--cEEEee
Q 017371           80 HPEDASMDKNGVIYTATRDGWIKRLQ-D-GTWVNWKFIDSQTLVGLTST-KEGHLIICDNA-NGLHKVSEDG--VENFLS  153 (372)
Q Consensus        80 ~p~~i~~d~~G~l~v~~~~g~i~~~~-~-g~~~~~~~~~~~p~~gl~~d-~dG~l~v~~~~-~gv~~~~~~g--~~~l~~  153 (372)
                      +-.+.+.++++.|++++. ..|.+++ + +..+.+......|. ++++| .+++||++|.. ..|++++.+|  .+.+..
T Consensus        78 ~~~C~~~~~~~~l~~~~~-~~I~~i~~~~~~~~~~~~~~~~~~-gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~  155 (386)
T 3v65_B           78 RRSCKALGPEPVLLFANR-IDIRQVLPHRSEYTLLLNNLENAI-ALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS  155 (386)
T ss_dssp             SSCEEECSSCCEEEEECB-SCEEEECTTSCCCEEEECSCSCEE-EEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEEC
T ss_pred             CCeECCccccceeEeecC-ccceeeccCCCcEEEEecCCCccE-EEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEe
Confidence            344566667778888865 4699999 4 45666666777899 99999 46789999876 4588888555  444422


Q ss_pred             ecCCcccccccceEEcc-CCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEe-CCccCcceEEEecCCC
Q 017371          154 YVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDED  231 (372)
Q Consensus       154 ~~~~~~~~~~~~l~~d~-dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~-~~~~~~~gi~~~~dg~  231 (372)
                          ..+..|++|++|+ +|+||++|.                 ..++|.++++++...+.+. .++..|++++++|+++
T Consensus       156 ----~~~~~p~glavd~~~g~lY~~d~-----------------~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g  214 (386)
T 3v65_B          156 ----TGLESPGGLAVDWVHDKLYWTDS-----------------GTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEG  214 (386)
T ss_dssp             ----SSCSCCCCEEEETTTTEEEEEET-----------------TTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTT
T ss_pred             ----CCCCCccEEEEEeCCCeEEEEcC-----------------CCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCC
Confidence                1234788999996 689999987                 3568999998755544443 5678999999999888


Q ss_pred             EEEEEeCCC-CeEEEEEccCCCCcceeeeccCCCCCCceeEEcC-CCCEEEEEecCchhHHHHhhcchhHHHHHHhcCcc
Q 017371          232 YVVVCESWK-FRCRKYWLKGERKGKLETFAENLPGAPDNINLAP-DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKL  309 (372)
Q Consensus       232 ~l~v~~~~~-~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~-~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~  309 (372)
                      .|||++... .+|++++++|..   ...+.......|++|++|+ +|+||+++..                         
T Consensus       215 ~ly~td~~~~~~I~r~~~dG~~---~~~~~~~~~~~PnGlavd~~~~~lY~aD~~-------------------------  266 (386)
T 3v65_B          215 TIYWTDWGNTPRIEASSMDGSG---RRIIADTHLFWPNGLTIDYAGRRMYWVDAK-------------------------  266 (386)
T ss_dssp             EEEEEECSSSCEEEEEETTSCS---CEEEECSSCSCEEEEEEEGGGTEEEEEETT-------------------------
T ss_pred             eEEEeccCCCCEEEEEeCCCCC---cEEEEECCCCCeeeEEEeCCCCEEEEEECC-------------------------
Confidence            999999988 899999998752   2233323334699999994 6789999987                         


Q ss_pred             ccccccCCCceEEEEECCCCcEEEEEECCCCCeeccceeeEEECCEEEEEeCCCCeEEEEe
Q 017371          310 FSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQ  370 (372)
Q Consensus       310 ~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~igs~~~~~i~~~~  370 (372)
                               .+.|.+++.+|.....+....   +..+.++..++++||+++..++.|.+++
T Consensus       267 ---------~~~I~~~d~dG~~~~~~~~~~---~~~P~giav~~~~ly~td~~~~~V~~~~  315 (386)
T 3v65_B          267 ---------HHVIERANLDGSHRKAVISQG---LPHPFAITVFEDSLYWTDWHTKSINSAN  315 (386)
T ss_dssp             ---------TTEEEEECTTSCSCEEEECSS---CSSEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred             ---------CCEEEEEeCCCCeeEEEEECC---CCCceEEEEECCEEEEeeCCCCeEEEEE
Confidence                     568999998886555443322   4467788888899999999999999987

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=99.81  E-value=5e-18  Score=158.82  Aligned_cols=250  Identities=16%  Similarity=0.175  Sum_probs=164.9

Q ss_pred             CceEecCCCCCCCccEEEcCCCcEEEEecCCeEEEEeCCceEEEEe------cCCCcccCeEEcCC----CCEEEEeCC-
Q 017371           69 DFIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQDGTWVNWKF------IDSQTLVGLTSTKE----GHLIICDNA-  137 (372)
Q Consensus        69 ~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~g~i~~~~~g~~~~~~~------~~~~p~~gl~~d~d----G~l~v~~~~-  137 (372)
                      .++.+..+ +..|++|+++++|+||+++..|+|+++++|+.+.+..      ..+.|+ ||+++++    |.|||++.. 
T Consensus        22 ~~~~va~~-l~~P~~ia~~pdG~l~V~e~~g~I~~i~~g~~~~~~~~~v~~~g~~~p~-gia~~pdf~~~g~lYv~~~~~   99 (352)
T 2ism_A           22 RVEEVVGG-LEVPWALAFLPDGGMLIAERPGRIRLFREGRLSTYAELSVYHRGESGLL-GLALHPRFPQEPYVYAYRTVA   99 (352)
T ss_dssp             CEEEEECC-CSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEEEECCCCCSTTCSEE-EEEECTTTTTSCEEEEEEEEC
T ss_pred             EEEEEECC-CCCceEEEEcCCCeEEEEeCCCeEEEEECCCccEeecceEeecCCCCce-eEEECCCCCCCCEEEEEEecC
Confidence            46677776 7899999999999999999889999999665544432      245788 9999997    789999763 


Q ss_pred             -----CcEEEEc-CCC----cEEEeeecC--CcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEe
Q 017371          138 -----NGLHKVS-EDG----VENFLSYVN--GSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYD  205 (372)
Q Consensus       138 -----~gv~~~~-~~g----~~~l~~~~~--~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d  205 (372)
                           ..|.+++ .++    .+.+....+  ....+.+++|++++||+||+++.....  ....  .......|+|+|++
T Consensus       100 ~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~--~~~~--~d~~~~~g~I~ri~  175 (352)
T 2ism_A          100 EGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYE--RELA--QDLASLGGKILRLT  175 (352)
T ss_dssp             TTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTC--GGGG--GCTTCSSSEEEEEC
T ss_pred             CCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCC--Cccc--cCCCCCceEEEEEc
Confidence                 4688888 433    233444334  334567899999999999999753110  0000  01123458999999


Q ss_pred             CCC-------------CeEEEEeCCccCcceEEEecCCCEEEEEeCCCCe--------EEEEEccCCCCcc---------
Q 017371          206 PSS-------------NITTLVADGFYFANGVALSRDEDYVVVCESWKFR--------CRKYWLKGERKGK---------  255 (372)
Q Consensus       206 ~~t-------------~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~--------i~~~~~~g~~~~~---------  255 (372)
                      +++             ...+++..++.+|+|+++++++..||+++.+.++        |.++.. |...+.         
T Consensus       176 ~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~-G~nyGwp~~~g~~~~  254 (352)
T 2ism_A          176 PEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVP-GGNYGWPRVVGRGND  254 (352)
T ss_dssp             TTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECT-TCBCCTTTCCSCCCC
T ss_pred             CCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEecc-CCcCCCCcccCCCCC
Confidence            974             2456677889999999999955559999987766        555432 221110         


Q ss_pred             ---eeeecc-CCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEECCC--C
Q 017371          256 ---LETFAE-NLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED--G  329 (372)
Q Consensus       256 ---~~~~~~-~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~--g  329 (372)
                         ...... .....|.++++ .+|++|+++..                                  .+.|.+++.+  +
T Consensus       255 ~~~~~p~~~~~~~~ap~G~~~-~~G~l~v~~~~----------------------------------~~~v~~v~~~~~~  299 (352)
T 2ism_A          255 PRYRDPLYFWPQGFPPGNLAF-FRGDLYVAGLR----------------------------------GQALLRLVLEGER  299 (352)
T ss_dssp             TTSCCCSEECTTCCCEEEEEE-ETTEEEEEETT----------------------------------TTEEEEEEEEEET
T ss_pred             CCCcCCeEecCCCCCCcceEE-ECCEEEEEECC----------------------------------CCEEEEEEECCCC
Confidence               000000 11124889998 67899999876                                  3466666543  3


Q ss_pred             cE-----EEEEECCCCCeeccceeeEEE-CCEEEEEeCCCC
Q 017371          330 TI-----IRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSN  364 (372)
Q Consensus       330 ~~-----~~~~~~~~g~~~~~~t~~~~~-~g~L~igs~~~~  364 (372)
                      ..     ...+-..    ...+..+.+. +|.||+.+...+
T Consensus       300 ~~~~~~~~~~~~~~----~~rp~~v~~~pdG~lyv~~~~~~  336 (352)
T 2ism_A          300 GRWRVLRVETALSG----FGRLREVQVGPDGALYVTTSNRD  336 (352)
T ss_dssp             TEEEEEEEEEEEES----SCCEEEEEECTTSCEEEEECSTT
T ss_pred             cceeecchheeccc----CCCeeEEEECCCCcEEEEEeCCC
Confidence            21     1222211    2346788886 699999997643

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.81  E-value=1.2e-17  Score=149.90  Aligned_cols=200  Identities=13%  Similarity=0.094  Sum_probs=151.3

Q ss_pred             CCCccEEEcC-CCcEEEEe-cCCeEEEEe-CCc-eEEEEe-cCCCcccCeEEcCC-CCEEEEeCC-CcEEEEcCCC--cE
Q 017371           79 NHPEDASMDK-NGVIYTAT-RDGWIKRLQ-DGT-WVNWKF-IDSQTLVGLTSTKE-GHLIICDNA-NGLHKVSEDG--VE  149 (372)
Q Consensus        79 ~~p~~i~~d~-~G~l~v~~-~~g~i~~~~-~g~-~~~~~~-~~~~p~~gl~~d~d-G~l~v~~~~-~gv~~~~~~g--~~  149 (372)
                      ..|+++++|+ ++.||+++ .+++|++++ +|. .+.+.. ....|. ++++|++ |+||+++.. ..|.+++.+|  .+
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~-~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~  114 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPE-GIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR  114 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEE-EEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCcc-EEEEEecCCeEEEEECCCCEEEEEEcCCCCEE
Confidence            4789999997 67999999 678999999 553 444433 336899 9999985 689999876 4688888655  44


Q ss_pred             EEeeecCCcccccccceEEcc-CCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEe-CCccCcceEEEe
Q 017371          150 NFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALS  227 (372)
Q Consensus       150 ~l~~~~~~~~~~~~~~l~~d~-dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~-~~~~~~~gi~~~  227 (372)
                      .+...    .+..|+++++|+ +|+||+++..               ...++|++++.+....+.+. ..+..|+|++++
T Consensus       115 ~~~~~----~~~~P~~i~vd~~~g~lyv~~~~---------------~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d  175 (267)
T 1npe_A          115 VLFDT----GLVNPRGIVTDPVRGNLYWTDWN---------------RDNPKIETSHMDGTNRRILAQDNLGLPNGLTFD  175 (267)
T ss_dssp             EEECS----SCSSEEEEEEETTTTEEEEEECC---------------SSSCEEEEEETTSCCCEEEECTTCSCEEEEEEE
T ss_pred             EEEEC----CCCCccEEEEeeCCCEEEEEECC---------------CCCcEEEEEecCCCCcEEEEECCCCCCcEEEEc
Confidence            44221    135789999998 5899999752               12578999998754444443 567789999999


Q ss_pred             cCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcC
Q 017371          228 RDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYP  307 (372)
Q Consensus       228 ~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p  307 (372)
                      ++++.|||++...++|.++++++..   ...+.. ....|+++++| +|++|+++..                       
T Consensus       176 ~~~~~lyv~d~~~~~I~~~~~~g~~---~~~~~~-~~~~P~gi~~d-~~~lyva~~~-----------------------  227 (267)
T 1npe_A          176 AFSSQLCWVDAGTHRAECLNPAQPG---RRKVLE-GLQYPFAVTSY-GKNLYYTDWK-----------------------  227 (267)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTEEE---EEEEEE-CCCSEEEEEEE-TTEEEEEETT-----------------------
T ss_pred             CCCCEEEEEECCCCEEEEEecCCCc---eEEEec-CCCCceEEEEe-CCEEEEEECC-----------------------
Confidence            9999999999999999999987632   223333 23469999998 6899999987                       


Q ss_pred             ccccccccCCCceEEEEECCC-CcEEEEEEC
Q 017371          308 KLFSQFITLGGGAHLIHVAED-GTIIRNLVD  337 (372)
Q Consensus       308 ~~~~~~~~~~~~~~v~~~~~~-g~~~~~~~~  337 (372)
                                 .+.|.+++++ |+.+..+..
T Consensus       228 -----------~~~v~~~d~~~g~~~~~i~~  247 (267)
T 1npe_A          228 -----------TNSVIAMDLAISKEMDTFHP  247 (267)
T ss_dssp             -----------TTEEEEEETTTTEEEEEECC
T ss_pred             -----------CCeEEEEeCCCCCceEEEcc
Confidence                       5689999985 888887754

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.80  E-value=1.3e-17  Score=154.33  Aligned_cols=211  Identities=12%  Similarity=0.080  Sum_probs=151.6

Q ss_pred             CCCCccEEEcCCCcEEEEe-cCCeEEEEe--CCceEEEEecCC------CcccCeEEcCCCCEEEEeC--CCcEEEEc-C
Q 017371           78 VNHPEDASMDKNGVIYTAT-RDGWIKRLQ--DGTWVNWKFIDS------QTLVGLTSTKEGHLIICDN--ANGLHKVS-E  145 (372)
Q Consensus        78 ~~~p~~i~~d~~G~l~v~~-~~g~i~~~~--~g~~~~~~~~~~------~p~~gl~~d~dG~l~v~~~--~~gv~~~~-~  145 (372)
                      ...|++|+++++|.+|+++ .++.|.++|  ++++........      .|. ++++ .+++|||++.  ...|.++| .
T Consensus        83 ~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~-~i~~-~~~~lyv~~~~~~~~v~viD~~  160 (328)
T 3dsm_A           83 FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTE-QMVQ-YGKYVYVNCWSYQNRILKIDTE  160 (328)
T ss_dssp             CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCC-CEEE-ETTEEEEEECTTCCEEEEEETT
T ss_pred             CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcc-eEEE-ECCEEEEEcCCCCCEEEEEECC
Confidence            3689999998889999999 789999999  566654444445      788 9999 5789999985  45799999 5


Q ss_pred             CC-c-EEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCC--ccCc
Q 017371          146 DG-V-ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG--FYFA  221 (372)
Q Consensus       146 ~g-~-~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~--~~~~  221 (372)
                      ++ + ..+..   +   ..|++++++++|++|+++... +..      .......+.|+++|++++++......  ...|
T Consensus       161 t~~~~~~i~~---g---~~p~~i~~~~dG~l~v~~~~~-~~~------~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p  227 (328)
T 3dsm_A          161 TDKVVDELTI---G---IQPTSLVMDKYNKMWTITDGG-YEG------SPYGYEAPSLYRIDAETFTVEKQFKFKLGDWP  227 (328)
T ss_dssp             TTEEEEEEEC---S---SCBCCCEECTTSEEEEEBCCB-CTT------CSSCBCCCEEEEEETTTTEEEEEEECCTTCCC
T ss_pred             CCeEEEEEEc---C---CCccceEEcCCCCEEEEECCC-ccC------CccccCCceEEEEECCCCeEEEEEecCCCCCc
Confidence            66 3 22211   1   357899999999999986531 000      00001147899999998887643321  3479


Q ss_pred             ceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcC-CCCEEEEEecCchhHHHHhhcchhHH
Q 017371          222 NGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAP-DGTFWIAIIKLDARRMKILNSSKLIK  300 (372)
Q Consensus       222 ~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~-~G~lwva~~~~~~~~~~~~~~~~~~r  300 (372)
                      +++++++|++.+|+++.   .|++++.++.+... ..+.......|+++++|+ +|++||++...               
T Consensus       228 ~~la~~~d~~~lyv~~~---~v~~~d~~t~~~~~-~~~~~~~~~~p~gi~vdp~~g~lyva~~~~---------------  288 (328)
T 3dsm_A          228 SEVQLNGTRDTLYWINN---DIWRMPVEADRVPV-RPFLEFRDTKYYGLTVNPNNGEVYVADAID---------------  288 (328)
T ss_dssp             EEEEECTTSCEEEEESS---SEEEEETTCSSCCS-SCSBCCCSSCEEEEEECTTTCCEEEEECTT---------------
T ss_pred             eeEEEecCCCEEEEEcc---EEEEEECCCCceee-eeeecCCCCceEEEEEcCCCCeEEEEcccc---------------
Confidence            99999999999999976   79999987654322 122221134699999998 78999999210               


Q ss_pred             HHHHhcCccccccccCCCceEEEEECCCCcEEEEEEC
Q 017371          301 HVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVD  337 (372)
Q Consensus       301 ~~~~~~p~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~  337 (372)
                                     ....+.|.+|+++|+++..+..
T Consensus       289 ---------------y~~~~~V~v~d~~g~~~~~i~~  310 (328)
T 3dsm_A          289 ---------------YQQQGIVYRYSPQGKLIDEFYV  310 (328)
T ss_dssp             ---------------SSSEEEEEEECTTCCEEEEEEE
T ss_pred             ---------------cccCCEEEEECCCCCEEEEEEe
Confidence                           0115789999999999998865

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.80  E-value=1.3e-17  Score=157.99  Aligned_cols=201  Identities=11%  Similarity=0.123  Sum_probs=152.9

Q ss_pred             CCCCccEEEc-CCCcEEEEe-cCCeEEEEe-CCc-eEEEE-ecCCCcccCeEEcC-CCCEEEEeCC-CcEEEEcCCC--c
Q 017371           78 VNHPEDASMD-KNGVIYTAT-RDGWIKRLQ-DGT-WVNWK-FIDSQTLVGLTSTK-EGHLIICDNA-NGLHKVSEDG--V  148 (372)
Q Consensus        78 ~~~p~~i~~d-~~G~l~v~~-~~g~i~~~~-~g~-~~~~~-~~~~~p~~gl~~d~-dG~l~v~~~~-~gv~~~~~~g--~  148 (372)
                      +..|.++++| .++.||+++ .+++|++++ +|. .+.+. .....|. ||++|+ .|+||+++.. ..|.+++.+|  .
T Consensus       115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~-glavd~~~g~lY~~d~~~~~I~~~~~dg~~~  193 (386)
T 3v65_B          115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPG-GLAVDWVHDKLYWTDSGTSRIEVANLDGAHR  193 (386)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCC-CEEEETTTTEEEEEETTTTEEEECBTTSCSC
T ss_pred             CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCcc-EEEEEeCCCeEEEEcCCCCeEEEEeCCCCce
Confidence            6789999999 478999999 688999999 554 44443 3445788 999995 6789999976 4577777666  4


Q ss_pred             EEEeeecCCcccccccceEEcc-CCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEe-CCccCcceEEE
Q 017371          149 ENFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVAL  226 (372)
Q Consensus       149 ~~l~~~~~~~~~~~~~~l~~d~-dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~-~~~~~~~gi~~  226 (372)
                      +.+..    ..+..|++|++|+ +|.||++|..                ..++|++++++....+.+. .++..|+|+++
T Consensus       194 ~~l~~----~~l~~P~giavdp~~g~ly~td~~----------------~~~~I~r~~~dG~~~~~~~~~~~~~PnGlav  253 (386)
T 3v65_B          194 KVLLW----QSLEKPRAIALHPMEGTIYWTDWG----------------NTPRIEASSMDGSGRRIIADTHLFWPNGLTI  253 (386)
T ss_dssp             EEEEC----SSCSCEEEEEEETTTTEEEEEECS----------------SSCEEEEEETTSCSCEEEECSSCSCEEEEEE
T ss_pred             EEeec----CCCCCCcEEEEEcCCCeEEEeccC----------------CCCEEEEEeCCCCCcEEEEECCCCCeeeEEE
Confidence            44432    1245789999996 6789999863                2478999999855544443 57888999999


Q ss_pred             ecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhc
Q 017371          227 SRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAY  306 (372)
Q Consensus       227 ~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~  306 (372)
                      +++++.|||+++..++|++++++|..   ...+.....+.|++|+++ ++++|++++.                      
T Consensus       254 d~~~~~lY~aD~~~~~I~~~d~dG~~---~~~~~~~~~~~P~giav~-~~~ly~td~~----------------------  307 (386)
T 3v65_B          254 DYAGRRMYWVDAKHHVIERANLDGSH---RKAVISQGLPHPFAITVF-EDSLYWTDWH----------------------  307 (386)
T ss_dssp             EGGGTEEEEEETTTTEEEEECTTSCS---CEEEECSSCSSEEEEEEE-TTEEEEEETT----------------------
T ss_pred             eCCCCEEEEEECCCCEEEEEeCCCCe---eEEEEECCCCCceEEEEE-CCEEEEeeCC----------------------
Confidence            99888999999999999999998742   223333334579999995 5689999987                      


Q ss_pred             CccccccccCCCceEEEEEC-CCCcEEEEEEC
Q 017371          307 PKLFSQFITLGGGAHLIHVA-EDGTIIRNLVD  337 (372)
Q Consensus       307 p~~~~~~~~~~~~~~v~~~~-~~g~~~~~~~~  337 (372)
                                  .+.|.+++ .+|+....+..
T Consensus       308 ------------~~~V~~~~~~~G~~~~~i~~  327 (386)
T 3v65_B          308 ------------TKSINSANKFTGKNQEIIRN  327 (386)
T ss_dssp             ------------TTEEEEEETTTCCSCEEEEC
T ss_pred             ------------CCeEEEEECCCCcceEEEcc
Confidence                        56899998 67877776654

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.80  E-value=4.5e-17  Score=150.08  Aligned_cols=220  Identities=10%  Similarity=0.115  Sum_probs=162.5

Q ss_pred             cEEEEecCCeEEEEe--CCceEEEEecCCCcccCeEEcC-CCCEEEEeCC-CcEEEEcCCC------cEEEeeecCCccc
Q 017371           91 VIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTK-EGHLIICDNA-NGLHKVSEDG------VENFLSYVNGSKL  160 (372)
Q Consensus        91 ~l~v~~~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~-dG~l~v~~~~-~gv~~~~~~g------~~~l~~~~~~~~~  160 (372)
                      .|++++. ..|.+++  .++...+......|. |+++|+ +++||+++.. ..|++++.+|      .+.+..    ..+
T Consensus         3 ~ll~~~~-~~I~~i~~~~~~~~~~~~~~~~p~-g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~----~~~   76 (316)
T 1ijq_A            3 YLFFTNR-HEVRKMTLDRSEYTSLIPNLRNVV-ALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS----RDI   76 (316)
T ss_dssp             EEEEECB-SSEEEEETTSCCCEEEECSCSSEE-EEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC----SSC
T ss_pred             EEEEECC-CeEEEEECCCcceEehhcCCCceE-EEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEe----CCC
Confidence            4667764 3599999  445556666678899 999996 5689999876 5688888332      232221    123


Q ss_pred             ccccceEEcc-CCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEe-CCccCcceEEEecCCCEEEEEeC
Q 017371          161 RFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDEDYVVVCES  238 (372)
Q Consensus       161 ~~~~~l~~d~-dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~-~~~~~~~gi~~~~dg~~l~v~~~  238 (372)
                      ..|.+|++|. +|+||++|.                 ..++|.++|+++...+.+. ..+..|++++++|+++.+||++.
T Consensus        77 ~~p~glavd~~~~~ly~~d~-----------------~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~  139 (316)
T 1ijq_A           77 QAPDGLAVDWIHSNIYWTDS-----------------VLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDW  139 (316)
T ss_dssp             SCCCEEEEETTTTEEEEEET-----------------TTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEEC
T ss_pred             CCcCEEEEeecCCeEEEEEC-----------------CCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEcc
Confidence            5788999995 679999986                 4678999999865555554 46789999999998889999998


Q ss_pred             CC-CeEEEEEccCCCCcceeeeccCCCCCCceeEEcC-CCCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccC
Q 017371          239 WK-FRCRKYWLKGERKGKLETFAENLPGAPDNINLAP-DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITL  316 (372)
Q Consensus       239 ~~-~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~-~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~  316 (372)
                      +. .+|++++++|..   .+.+.......|.+|++|+ +++||+++..                                
T Consensus       140 ~~~~~I~~~~~dG~~---~~~~~~~~~~~P~gla~d~~~~~lY~~D~~--------------------------------  184 (316)
T 1ijq_A          140 GTPAKIKKGGLNGVD---IYSLVTENIQWPNGITLDLLSGRLYWVDSK--------------------------------  184 (316)
T ss_dssp             SSSCEEEEEETTSCC---EEEEECSSCSCEEEEEEETTTTEEEEEETT--------------------------------
T ss_pred             CCCCeEEEEcCCCCC---eEEEEECCCCCceEEEEeccCCEEEEEECC--------------------------------
Confidence            76 799999998742   2233322335799999996 5689999976                                


Q ss_pred             CCceEEEEECCCCcEEEEEECCCCCeeccceeeEEECCEEEEEeCCCCeEEEEeC
Q 017371          317 GGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL  371 (372)
Q Consensus       317 ~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~igs~~~~~i~~~~~  371 (372)
                        .+.|.+++.+|+..+.+....+. +..+.++..++++||+....++.|.+++.
T Consensus       185 --~~~I~~~d~dg~~~~~~~~~~~~-~~~P~giav~~~~ly~~d~~~~~V~~~~~  236 (316)
T 1ijq_A          185 --LHSISSIDVNGGNRKTILEDEKR-LAHPFSLAVFEDKVFWTDIINEAIFSANR  236 (316)
T ss_dssp             --TTEEEEEETTSCSCEEEEECTTT-TSSEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred             --CCeEEEEecCCCceEEEeecCCc-cCCcEEEEEECCEEEEEECCCCeEEEEeC
Confidence              46899999888665555432221 44577888888999999999999999874

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.79  E-value=2.4e-17  Score=151.92  Aligned_cols=182  Identities=13%  Similarity=0.089  Sum_probs=136.7

Q ss_pred             CCCCccEEEcC-CCcEEEEe-cCCeEEEEe-CC-----ceEEEEe-cCCCcccCeEEcC-CCCEEEEeCC-CcEEEEcCC
Q 017371           78 VNHPEDASMDK-NGVIYTAT-RDGWIKRLQ-DG-----TWVNWKF-IDSQTLVGLTSTK-EGHLIICDNA-NGLHKVSED  146 (372)
Q Consensus        78 ~~~p~~i~~d~-~G~l~v~~-~~g~i~~~~-~g-----~~~~~~~-~~~~p~~gl~~d~-dG~l~v~~~~-~gv~~~~~~  146 (372)
                      +..|+++++|+ ++.||+++ .+++|++++ ++     ..+.+.. ....|. ||++|. +|+||+++.. ..|.+++.+
T Consensus        29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~-glavd~~~~~ly~~d~~~~~I~~~~~~  107 (316)
T 1ijq_A           29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD-GLAVDWIHSNIYWTDSVLGTVSVADTK  107 (316)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC-EEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC-EEEEeecCCeEEEEECCCCEEEEEeCC
Confidence            67899999996 67999999 678999999 54     2333332 346788 999995 6789999876 568888866


Q ss_pred             C--cEEEeeecCCcccccccceEEcc-CCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEe-CCccCcc
Q 017371          147 G--VENFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFAN  222 (372)
Q Consensus       147 g--~~~l~~~~~~~~~~~~~~l~~d~-dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~-~~~~~~~  222 (372)
                      |  .+.+...    .+..|++|++|+ +|+||++|..                ..++|++++++....+.+. ..+..|+
T Consensus       108 g~~~~~~~~~----~~~~P~~iavdp~~g~ly~~d~~----------------~~~~I~~~~~dG~~~~~~~~~~~~~P~  167 (316)
T 1ijq_A          108 GVKRKTLFRE----NGSKPRAIVVDPVHGFMYWTDWG----------------TPAKIKKGGLNGVDIYSLVTENIQWPN  167 (316)
T ss_dssp             SSSEEEEEEC----TTCCEEEEEEETTTTEEEEEECS----------------SSCEEEEEETTSCCEEEEECSSCSCEE
T ss_pred             CCceEEEEEC----CCCCcceEEeCCCCCEEEEEccC----------------CCCeEEEEcCCCCCeEEEEECCCCCce
Confidence            6  4444321    235789999997 6799999863                2478999998754444443 5688999


Q ss_pred             eEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccC--CCCCCceeEEcCCCCEEEEEec
Q 017371          223 GVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAEN--LPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       223 gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~--~~g~p~~i~~d~~G~lwva~~~  284 (372)
                      |++++++++.|||+++..++|.+++++|..   .+.+...  ....|++|++|. |++|++++.
T Consensus       168 gla~d~~~~~lY~~D~~~~~I~~~d~dg~~---~~~~~~~~~~~~~P~giav~~-~~ly~~d~~  227 (316)
T 1ijq_A          168 GITLDLLSGRLYWVDSKLHSISSIDVNGGN---RKTILEDEKRLAHPFSLAVFE-DKVFWTDII  227 (316)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCS---CEEEEECTTTTSSEEEEEEET-TEEEEEETT
T ss_pred             EEEEeccCCEEEEEECCCCeEEEEecCCCc---eEEEeecCCccCCcEEEEEEC-CEEEEEECC
Confidence            999999999999999999999999998743   2333322  234699999985 889999987

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.79  E-value=2.1e-17  Score=147.61  Aligned_cols=184  Identities=17%  Similarity=0.224  Sum_probs=136.1

Q ss_pred             CCCCCCccEEEcCCCcEEEEecCCeEEEEe-CCc-eEEEEe-cCCCcccCeEEcCCCCEEEEeCC-CcEEEEcCCC-cEE
Q 017371           76 GSVNHPEDASMDKNGVIYTATRDGWIKRLQ-DGT-WVNWKF-IDSQTLVGLTSTKEGHLIICDNA-NGLHKVSEDG-VEN  150 (372)
Q Consensus        76 g~~~~p~~i~~d~~G~l~v~~~~g~i~~~~-~g~-~~~~~~-~~~~p~~gl~~d~dG~l~v~~~~-~gv~~~~~~g-~~~  150 (372)
                      ..+..|++|+++++|+||+++.+++|++++ ++. ...+.. ....|. +++++++|+||+++.. .+|.+++... ...
T Consensus        64 ~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~~~~~~~~~~~p~-~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~  142 (270)
T 1rwi_B           64 NGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPE-GLAVDTQGAVYVADRGNNRVVKLAAGSKTQT  142 (270)
T ss_dssp             CSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCSCSSEE-EEEECTTCCEEEEEGGGTEEEEECTTCCSCE
T ss_pred             CCcCCcceeEECCCCCEEEEcCCCEEEEEeCCCceEeeeecCCcCCCc-ceEECCCCCEEEEECCCCEEEEEECCCceeE
Confidence            335689999999999999999888999999 554 333322 225688 9999999999999865 4688887333 222


Q ss_pred             EeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEE-eCCccCcceEEEecC
Q 017371          151 FLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-ADGFYFANGVALSRD  229 (372)
Q Consensus       151 l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~-~~~~~~~~gi~~~~d  229 (372)
                      ...   ...+..|++|+++++|++|+++.                 ..++|+++|++++..... ...+..|.+++++++
T Consensus       143 ~~~---~~~~~~p~~i~~~~~g~l~v~~~-----------------~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~  202 (270)
T 1rwi_B          143 VLP---FTGLNDPDGVAVDNSGNVYVTDT-----------------DNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEA  202 (270)
T ss_dssp             ECC---CCSCCSCCCEEECTTCCEEEEEG-----------------GGTEEEEECTTTCCEEECCCSSCCSEEEEEECTT
T ss_pred             eec---cccCCCceeEEEeCCCCEEEEEC-----------------CCCEEEEEecCCCceEeecccCCCCceEEEECCC
Confidence            211   11235788999999999999875                 357899999986655433 234577899999999


Q ss_pred             CCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 017371          230 EDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       230 g~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~  284 (372)
                      | .+|+++..+++|.+++.++....   .........|.++++|++|++|+++..
T Consensus       203 g-~l~v~~~~~~~v~~~~~~~~~~~---~~~~~~~~~p~~i~~~~~g~l~v~~~~  253 (270)
T 1rwi_B          203 G-TVYVTEHNTNQVVKLLAGSTTST---VLPFTGLNTPLAVAVDSDRTVYVADRG  253 (270)
T ss_dssp             C-CEEEEETTTSCEEEECTTCSCCE---ECCCCSCSCEEEEEECTTCCEEEEEGG
T ss_pred             C-CEEEEECCCCcEEEEcCCCCcce---eeccCCCCCceeEEECCCCCEEEEECC
Confidence            9 49999998889999998764221   111111235899999999999999987

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.79  E-value=7.1e-17  Score=144.73  Aligned_cols=218  Identities=11%  Similarity=0.136  Sum_probs=158.6

Q ss_pred             cEEEEecCCeEEEEe-CCce-------EEEEecCCCcccCeEEcC-CCCEEEEeCC-CcEEEEcCCC--cEEEeeecCCc
Q 017371           91 VIYTATRDGWIKRLQ-DGTW-------VNWKFIDSQTLVGLTSTK-EGHLIICDNA-NGLHKVSEDG--VENFLSYVNGS  158 (372)
Q Consensus        91 ~l~v~~~~g~i~~~~-~g~~-------~~~~~~~~~p~~gl~~d~-dG~l~v~~~~-~gv~~~~~~g--~~~l~~~~~~~  158 (372)
                      .||+++. +.|++++ ++..       ..+..+..+|. ++++|+ +++||+++.. ..|.+++.+|  ...+..    .
T Consensus         3 ~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~-gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~----~   76 (267)
T 1npe_A            3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVII-GLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIR----Q   76 (267)
T ss_dssp             EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEE-EEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEC----T
T ss_pred             EEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEE-EEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEE----C
Confidence            5788774 4799998 5532       12333345788 999997 4689999976 4588888555  443321    1


Q ss_pred             ccccccceEEccC-CcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEe-CCccCcceEEEecCCCEEEEE
Q 017371          159 KLRFANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDEDYVVVC  236 (372)
Q Consensus       159 ~~~~~~~l~~d~d-G~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~-~~~~~~~gi~~~~dg~~l~v~  236 (372)
                      .+..|++|++|++ |+||++|.                 ..++|.+++.++...+.+. .++..|++++++++++.+||+
T Consensus        77 ~~~~p~~ia~d~~~~~lyv~d~-----------------~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~  139 (267)
T 1npe_A           77 DLGSPEGIALDHLGRTIFWTDS-----------------QLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWT  139 (267)
T ss_dssp             TCCCEEEEEEETTTTEEEEEET-----------------TTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEE
T ss_pred             CCCCccEEEEEecCCeEEEEEC-----------------CCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEE
Confidence            2357889999985 79999986                 4578999998754444443 456789999999988889999


Q ss_pred             eCC--CCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCC-CCEEEEEecCchhHHHHhhcchhHHHHHHhcCcccccc
Q 017371          237 ESW--KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPD-GTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQF  313 (372)
Q Consensus       237 ~~~--~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~-G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~  313 (372)
                      +..  .++|+++++++...   +.+.......|.++++|++ ++||+++..                             
T Consensus       140 ~~~~~~~~I~~~~~dg~~~---~~~~~~~~~~P~gia~d~~~~~lyv~d~~-----------------------------  187 (267)
T 1npe_A          140 DWNRDNPKIETSHMDGTNR---RILAQDNLGLPNGLTFDAFSSQLCWVDAG-----------------------------  187 (267)
T ss_dssp             ECCSSSCEEEEEETTSCCC---EEEECTTCSCEEEEEEETTTTEEEEEETT-----------------------------
T ss_pred             ECCCCCcEEEEEecCCCCc---EEEEECCCCCCcEEEEcCCCCEEEEEECC-----------------------------
Confidence            987  57999999987432   2222222346999999996 579999987                             


Q ss_pred             ccCCCceEEEEECCCCcEEEEEECCCCCeeccceeeEEECCEEEEEeCCCCeEEEEeCC
Q 017371          314 ITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQLS  372 (372)
Q Consensus       314 ~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~igs~~~~~i~~~~~~  372 (372)
                           .+.|.+++.+|.....+..  +  ...+.++..++++||+++..++.|.+++.+
T Consensus       188 -----~~~I~~~~~~g~~~~~~~~--~--~~~P~gi~~d~~~lyva~~~~~~v~~~d~~  237 (267)
T 1npe_A          188 -----THRAECLNPAQPGRRKVLE--G--LQYPFAVTSYGKNLYYTDWKTNSVIAMDLA  237 (267)
T ss_dssp             -----TTEEEEEETTEEEEEEEEE--C--CCSEEEEEEETTEEEEEETTTTEEEEEETT
T ss_pred             -----CCEEEEEecCCCceEEEec--C--CCCceEEEEeCCEEEEEECCCCeEEEEeCC
Confidence                 5689999988765544432  1  234567777889999999999999999863

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.79  E-value=2e-17  Score=152.46  Aligned_cols=201  Identities=15%  Similarity=0.164  Sum_probs=150.3

Q ss_pred             CCCCccEEEcC-CCcEEEEe-cCCeEEEEe-CCc---eEEEEecCCCcccCeEEcC-CCCEEEEeCC-CcEEEEcCCC--
Q 017371           78 VNHPEDASMDK-NGVIYTAT-RDGWIKRLQ-DGT---WVNWKFIDSQTLVGLTSTK-EGHLIICDNA-NGLHKVSEDG--  147 (372)
Q Consensus        78 ~~~p~~i~~d~-~G~l~v~~-~~g~i~~~~-~g~---~~~~~~~~~~p~~gl~~d~-dG~l~v~~~~-~gv~~~~~~g--  147 (372)
                      +..|..+++|+ +|.||+++ .+++|++++ +|.   ...+......|. |+++|. .|+||+++.. ..|.+++.+|  
T Consensus        34 ~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~-glavd~~~g~ly~~d~~~~~I~~~~~dG~~  112 (318)
T 3sov_A           34 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPD-GLACDWLGEKLYWTDSETNRIEVSNLDGSL  112 (318)
T ss_dssp             EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCC-EEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCcc-EEEEEcCCCeEEEEECCCCEEEEEECCCCc
Confidence            45677888885 68999999 678999999 553   223344556889 999995 7799999876 4678888666  


Q ss_pred             cEEEeeecCCcccccccceEEcc-CCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEE-eCCccCcceEE
Q 017371          148 VENFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-ADGFYFANGVA  225 (372)
Q Consensus       148 ~~~l~~~~~~~~~~~~~~l~~d~-dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~-~~~~~~~~gi~  225 (372)
                      .+.+..    ..+..|++|++|+ .|.||++|..                ..++|++++++....+.+ ..++..|||++
T Consensus       113 ~~~l~~----~~~~~P~giavdp~~g~ly~td~~----------------~~~~I~r~~~dG~~~~~~~~~~l~~Pngla  172 (318)
T 3sov_A          113 RKVLFW----QELDQPRAIALDPSSGFMYWTDWG----------------EVPKIERAGMDGSSRFIIINSEIYWPNGLT  172 (318)
T ss_dssp             CEEEEC----SSCSSEEEEEEEGGGTEEEEEECS----------------SSCEEEEEETTSCSCEEEECSSCSCEEEEE
T ss_pred             EEEEEe----CCCCCccEEEEeCCCCEEEEEecC----------------CCCEEEEEEcCCCCeEEEEECCCCCccEEE
Confidence            454432    2245789999997 5899999853                357899999885444444 36788999999


Q ss_pred             EecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHh
Q 017371          226 LSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAA  305 (372)
Q Consensus       226 ~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~  305 (372)
                      ++++++.|||+++..++|++++++|..   .+.+.....+.|+++++|.+ ++|++++.                     
T Consensus       173 vd~~~~~lY~aD~~~~~I~~~d~dG~~---~~~~~~~~~~~P~glav~~~-~lywtd~~---------------------  227 (318)
T 3sov_A          173 LDYEEQKLYWADAKLNFIHKSNLDGTN---RQAVVKGSLPHPFALTLFED-ILYWTDWS---------------------  227 (318)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSCS---CEEEECSCCSCEEEEEEETT-EEEEEETT---------------------
T ss_pred             EeccCCEEEEEECCCCEEEEEcCCCCc---eEEEecCCCCCceEEEEeCC-EEEEEecC---------------------
Confidence            999988999999999999999998742   23344333457999999854 67777876                     


Q ss_pred             cCccccccccCCCceEEEEECC-CCcEEEEEEC
Q 017371          306 YPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVD  337 (372)
Q Consensus       306 ~p~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~  337 (372)
                                   .+.|.++++ +|+....+..
T Consensus       228 -------------~~~V~~~~~~~G~~~~~i~~  247 (318)
T 3sov_A          228 -------------THSILACNKYTGEGLREIHS  247 (318)
T ss_dssp             -------------TTEEEEEETTTCCSCEEEEC
T ss_pred             -------------CCeEEEEECCCCCceEEEeC
Confidence                         568888887 5776555543

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.78  E-value=5.4e-17  Score=154.38  Aligned_cols=225  Identities=9%  Similarity=0.109  Sum_probs=166.8

Q ss_pred             EEcCCCcEEEEecCCeEEEEe-C-CceEEEEecCCCcccCeEEcC-CCCEEEEeCC-CcEEEEcCCC------cEEEeee
Q 017371           85 SMDKNGVIYTATRDGWIKRLQ-D-GTWVNWKFIDSQTLVGLTSTK-EGHLIICDNA-NGLHKVSEDG------VENFLSY  154 (372)
Q Consensus        85 ~~d~~G~l~v~~~~g~i~~~~-~-g~~~~~~~~~~~p~~gl~~d~-dG~l~v~~~~-~gv~~~~~~g------~~~l~~~  154 (372)
                      +.++...|++++ ...|.+++ + .....+......|. +|++|+ ++.||++|.. ..|++++.+|      .+.+.. 
T Consensus        79 ~~~~~~~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~-~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~-  155 (400)
T 3p5b_L           79 AVGSIAYLFFTN-RHEVRKMTLDRSEYTSLIPNLRNVV-ALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS-  155 (400)
T ss_dssp             CSTTSCEEEEEE-TTEEEEECTTSCSCEEEECSCSCEE-EEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEEC-
T ss_pred             eccccceeEEec-cceeEEEccCCcceeEeccccCcce-EEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEe-
Confidence            344455677776 45799999 4 44666666678899 999995 6789999876 4588887433      222221 


Q ss_pred             cCCcccccccceEEcc-CCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEe-CCccCcceEEEecCCCE
Q 017371          155 VNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDEDY  232 (372)
Q Consensus       155 ~~~~~~~~~~~l~~d~-dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~-~~~~~~~gi~~~~dg~~  232 (372)
                         ..+..|.+|++|. .++||++|.                 ..++|.+++++++..+.+. ..+..|++++++|.++.
T Consensus       156 ---~~~~~p~glavD~~~~~lY~~d~-----------------~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~  215 (400)
T 3p5b_L          156 ---RDIQAPDGLAVDWIHSNIYWTDS-----------------VLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGF  215 (400)
T ss_dssp             ---SSCSCEEEEEEETTTTEEEEEET-----------------TTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTE
T ss_pred             ---CCCCCcccEEEEecCCceEEEEC-----------------CCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCe
Confidence               2245788999997 789999987                 4678999999866555544 57888999999998889


Q ss_pred             EEEEeCCC-CeEEEEEccCCCCcceeeeccCCCCCCceeEEcC-CCCEEEEEecCchhHHHHhhcchhHHHHHHhcCccc
Q 017371          233 VVVCESWK-FRCRKYWLKGERKGKLETFAENLPGAPDNINLAP-DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLF  310 (372)
Q Consensus       233 l~v~~~~~-~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~-~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~  310 (372)
                      |||++.+. .+|++++++|...   ..+.......|.+|++|+ +++||+++..                          
T Consensus       216 ly~td~~~~~~I~~~~~dG~~~---~~~~~~~l~~P~glavd~~~~~lY~aD~~--------------------------  266 (400)
T 3p5b_L          216 MYWTDWGTPAKIKKGGLNGVDI---YSLVTENIQWPNGITLDLLSGRLYWVDSK--------------------------  266 (400)
T ss_dssp             EEEEECSSSCCEEEEETTSCSC---EEEECSSCSCEEEEEEETTTTEEEEEETT--------------------------
T ss_pred             EEEEeCCCCCEEEEEeCCCCcc---EEEEECCCCceEEEEEEeCCCEEEEEECC--------------------------
Confidence            99999864 7999999987532   223323334699999995 5689999976                          


Q ss_pred             cccccCCCceEEEEECCCCcEEEEEECCCCCeeccceeeEEECCEEEEEeCCCCeEEEEe
Q 017371          311 SQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQ  370 (372)
Q Consensus       311 ~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~igs~~~~~i~~~~  370 (372)
                              ...|.+++.+|...+.+....+. +..+.++..++++||+.+..++.|.+++
T Consensus       267 --------~~~I~~~d~dG~~~~~~~~~~~~-l~~P~gl~v~~~~lywtd~~~~~V~~~~  317 (400)
T 3p5b_L          267 --------LHSISSIDVNGGNRKTILEDEKR-LAHPFSLAVFEDKVFWTDIINEAIFSAN  317 (400)
T ss_dssp             --------TTEEEEEETTSCCCEEEEECSST-TSSEEEEEEETTEEEEEESSSCSEEEEE
T ss_pred             --------CCEEEEEeCCCCccEEEEeCCCC-CCCCEEEEEeCCEEEEecCCCCeEEEEE
Confidence                    46899999888765555432222 4567788888999999999999999986

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.77  E-value=1.6e-17  Score=153.72  Aligned_cols=192  Identities=11%  Similarity=0.135  Sum_probs=135.5

Q ss_pred             EecCCCCCCCccEEEcCCCcEEEEe-cCCeEEEEe-CCc---eEEEEe---------cCCCcccCeEEcC-CCCEEEEeC
Q 017371           72 KVGEGSVNHPEDASMDKNGVIYTAT-RDGWIKRLQ-DGT---WVNWKF---------IDSQTLVGLTSTK-EGHLIICDN  136 (372)
Q Consensus        72 ~~~~g~~~~p~~i~~d~~G~l~v~~-~~g~i~~~~-~g~---~~~~~~---------~~~~p~~gl~~d~-dG~l~v~~~  136 (372)
                      ....+.+..|.+|++|++|+||+++ .+++|.+++ +|+   +..+..         ....|. ++++++ +|+|||++.
T Consensus        84 ~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~-~ia~~~~~g~lyv~d~  162 (329)
T 3fvz_A           84 SSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPT-DVAVEPSTGAVFVSDG  162 (329)
T ss_dssp             EECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEE-EEEECTTTCCEEEEEC
T ss_pred             ccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCc-EEEEeCCCCeEEEEeC
Confidence            3444667799999999999999999 678999999 665   333321         123688 999998 899999995


Q ss_pred             --CCcEEEEcCCC--cEEEeeecCC-----cccccccceEEccC-CcEEEEeCCCCCCCcccccccccccCCCeEEEEeC
Q 017371          137 --ANGLHKVSEDG--VENFLSYVNG-----SKLRFANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDP  206 (372)
Q Consensus       137 --~~gv~~~~~~g--~~~l~~~~~~-----~~~~~~~~l~~d~d-G~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~  206 (372)
                        ...|.+++.+|  ...+.....+     ..+..|++|+++++ |+||++|.                 .+++|.+||+
T Consensus       163 ~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~-----------------~~~~I~~~~~  225 (329)
T 3fvz_A          163 YCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADR-----------------ENGRIQCFKT  225 (329)
T ss_dssp             SSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEET-----------------TTTEEEEEET
T ss_pred             CCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEEC-----------------CCCEEEEEEC
Confidence              46788899777  4444322111     24567999999998 89999986                 4679999999


Q ss_pred             CCCeEEEEeCC---ccCcceEEEec------CCCEEEEEeCCCCeEEEEEccCCCCcceeeec--cCCCCCCceeEEcCC
Q 017371          207 SSNITTLVADG---FYFANGVALSR------DEDYVVVCESWKFRCRKYWLKGERKGKLETFA--ENLPGAPDNINLAPD  275 (372)
Q Consensus       207 ~t~~~~~~~~~---~~~~~gi~~~~------dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~--~~~~g~p~~i~~d~~  275 (372)
                      ++|+.......   ...+.+++++|      +|+ +|+++....+|..++....+.  ...+.  ......|.++++|++
T Consensus       226 ~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~-~~v~~~~~~~v~~~~~~~g~~--~~~~~~~~~~~~~p~~ia~~~d  302 (329)
T 3fvz_A          226 DTKEFVREIKHASFGRNVFAISYIPGFLFAVNGK-PYFGDQEPVQGFVMNFSSGEI--IDVFKPVRKHFDMPHDIVASED  302 (329)
T ss_dssp             TTCCEEEEECCTTTTTCEEEEEEETTEEEEEECC-CCTTCSCCCCEEEEETTTCCE--EEEECCSSSCCSSEEEEEECTT
T ss_pred             CCCcEEEEEeccccCCCcceeeecCCEEEEeCCC-EEeccCCCcEEEEEEcCCCeE--EEEEcCCCCccCCeeEEEECCC
Confidence            86765544321   12233444554      665 677777777899998754321  12221  122346999999999


Q ss_pred             CCEEEEEec
Q 017371          276 GTFWIAIIK  284 (372)
Q Consensus       276 G~lwva~~~  284 (372)
                      |++||++..
T Consensus       303 G~lyvad~~  311 (329)
T 3fvz_A          303 GTVYIGDAH  311 (329)
T ss_dssp             SEEEEEESS
T ss_pred             CCEEEEECC
Confidence            999999987

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.76  E-value=2.2e-16  Score=161.43  Aligned_cols=228  Identities=9%  Similarity=0.099  Sum_probs=169.3

Q ss_pred             ccEEEcCCCcEEEEecCCeEEEEe--CCceEEEEecCCCcccCeEEcC-CCCEEEEeCCC-cEEEEcCCC------cEEE
Q 017371           82 EDASMDKNGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTK-EGHLIICDNAN-GLHKVSEDG------VENF  151 (372)
Q Consensus        82 ~~i~~d~~G~l~v~~~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~-dG~l~v~~~~~-gv~~~~~~g------~~~l  151 (372)
                      ...+++....|++++. ..|.+++  .+....+......+. +|+++. +++||+++... .|++++.+|      .+.+
T Consensus       388 ~C~~~~~~p~Ll~an~-~~Ir~i~l~~~~~~~l~~~~~~~~-gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~v  465 (791)
T 3m0c_C          388 ACKAVGSIAYLFFTNR-HEVRKMTLDRSEYTSLIPNLRNVV-ALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV  465 (791)
T ss_dssp             CCEETTSCCEEEEECB-SSEEEECTTSCCCEEEECSCSSEE-EEEEETTTTEEEEEETTTTEEEEEEC--------CEEE
T ss_pred             eeeecccccccccccc-cceeEeeccCCcceeeecCCCceE-EEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEE
Confidence            3455565667777764 3588888  445666666777889 999996 67899999874 477777433      2222


Q ss_pred             eeecCCcccccccceEEccCC-cEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEe-CCccCcceEEEecC
Q 017371          152 LSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRD  229 (372)
Q Consensus       152 ~~~~~~~~~~~~~~l~~d~dG-~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~-~~~~~~~gi~~~~d  229 (372)
                      .    ...+..|.+|++|..+ +||++|.                 ..++|.+++.++...+++. ..+..|++|++++.
T Consensus       466 i----~~~l~~P~GLAvD~~~~~LY~tD~-----------------~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~  524 (791)
T 3m0c_C          466 I----SRDIQAPDGLAVDWIHSNIYWTDS-----------------VLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPV  524 (791)
T ss_dssp             E----CSSCSCCCEEEEETTTTEEEEEET-----------------TTTEEEEEETTSSSEEEEEECTTCCEEEEEEETT
T ss_pred             E----ecCCCCcceeeeeecCCcEEEEec-----------------CCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecC
Confidence            2    2234678999999755 8999987                 4678999999866555554 57888999999999


Q ss_pred             CCEEEEEeCCC-CeEEEEEccCCCCcceeeeccCCCCCCceeEEc-CCCCEEEEEecCchhHHHHhhcchhHHHHHHhcC
Q 017371          230 EDYVVVCESWK-FRCRKYWLKGERKGKLETFAENLPGAPDNINLA-PDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYP  307 (372)
Q Consensus       230 g~~l~v~~~~~-~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d-~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p  307 (372)
                      ++.|||++++. .+|++++++|..   ...+.......|.+|++| .+|+||+++..                       
T Consensus       525 ~g~LYwtD~g~~~~I~~~~~dG~~---~~~lv~~~l~~P~GLavD~~~~~LYwaD~~-----------------------  578 (791)
T 3m0c_C          525 HGFMYWTDWGTPAKIKKGGLNGVD---IYSLVTENIQWPNGITLDLLSGRLYWVDSK-----------------------  578 (791)
T ss_dssp             TTEEEEEECSSSCEEEEEETTSCC---EEEEECSSCSCEEEEEEETTTTEEEEEETT-----------------------
T ss_pred             CCCEEEecCCCCCeEEEEecCCCc---eEEEEeCCCCCceEEEEecCCCeEEEEeCC-----------------------
Confidence            88999999876 899999998752   223333333469999999 56789999976                       


Q ss_pred             ccccccccCCCceEEEEECCCCcEEEEEECCCCCeeccceeeEEECCEEEEEeCCCCeEEEEe
Q 017371          308 KLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQ  370 (372)
Q Consensus       308 ~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~igs~~~~~i~~~~  370 (372)
                                 ...|.+++.+|.....+....+. +..+.++...+++||+.+..++.|.+++
T Consensus       579 -----------~~~I~~~d~dG~~~~~v~~~~~~-l~~P~glav~~~~lYwtD~~~~~I~~~d  629 (791)
T 3m0c_C          579 -----------LHSISSIDVNGGNRKTILEDEKR-LAHPFSLAVFEDKVFWTDIINEAIFSAN  629 (791)
T ss_dssp             -----------TTEEEEEETTSCSCEEEEECTTT-TSSEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred             -----------CCcEEEEecCCCceEEEecCCCc-cCCCCEEEEeCCEEEEEECCCCEEEEEe
Confidence                       46899999988766655433232 4566778888899999999999999986

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.75  E-value=1.9e-16  Score=150.55  Aligned_cols=182  Identities=13%  Similarity=0.099  Sum_probs=136.3

Q ss_pred             CCCCccEEEcC-CCcEEEEe-cCCeEEEEe-CC-----ceEEEEe-cCCCcccCeEEcC-CCCEEEEeCC-CcEEEEcCC
Q 017371           78 VNHPEDASMDK-NGVIYTAT-RDGWIKRLQ-DG-----TWVNWKF-IDSQTLVGLTSTK-EGHLIICDNA-NGLHKVSED  146 (372)
Q Consensus        78 ~~~p~~i~~d~-~G~l~v~~-~~g~i~~~~-~g-----~~~~~~~-~~~~p~~gl~~d~-dG~l~v~~~~-~gv~~~~~~  146 (372)
                      +..|.+|++|+ ++.||+++ .+++|++++ +|     ..+.+.. ....|. ||++|. .++||+++.. ..|.+++.+
T Consensus       111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~-glavD~~~~~lY~~d~~~~~I~~~~~~  189 (400)
T 3p5b_L          111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD-GLAVDWIHSNIYWTDSVLGTVSVADTK  189 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE-EEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred             cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc-cEEEEecCCceEEEECCCCeEEEEeCC
Confidence            67899999995 78999999 678999998 54     2333333 556789 999996 7899999976 457788866


Q ss_pred             C--cEEEeeecCCcccccccceEEcc-CCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEE-eCCccCcc
Q 017371          147 G--VENFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-ADGFYFAN  222 (372)
Q Consensus       147 g--~~~l~~~~~~~~~~~~~~l~~d~-dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~-~~~~~~~~  222 (372)
                      |  .+.+...    .+..|++|++|+ +|.||++|..                ..++|++++.++...+.+ ..++..|+
T Consensus       190 g~~~~~l~~~----~~~~P~~iavdp~~g~ly~td~~----------------~~~~I~~~~~dG~~~~~~~~~~l~~P~  249 (400)
T 3p5b_L          190 GVKRKTLFRE----NGSKPRAIVVDPVHGFMYWTDWG----------------TPAKIKKGGLNGVDIYSLVTENIQWPN  249 (400)
T ss_dssp             TCSEEEEEEC----SSCCEEEEEEETTTTEEEEEECS----------------SSCCEEEEETTSCSCEEEECSSCSCEE
T ss_pred             CCceEEEEeC----CCCCcceEEEecccCeEEEEeCC----------------CCCEEEEEeCCCCccEEEEECCCCceE
Confidence            6  4444331    245689999997 6799999863                346899999985554444 45688999


Q ss_pred             eEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccC--CCCCCceeEEcCCCCEEEEEec
Q 017371          223 GVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAEN--LPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       223 gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~--~~g~p~~i~~d~~G~lwva~~~  284 (372)
                      |++++++++.|||+++..++|++++++|...   ..+...  ....|.+++++. +++|++++.
T Consensus       250 glavd~~~~~lY~aD~~~~~I~~~d~dG~~~---~~~~~~~~~l~~P~gl~v~~-~~lywtd~~  309 (400)
T 3p5b_L          250 GITLDLLSGRLYWVDSKLHSISSIDVNGGNR---KTILEDEKRLAHPFSLAVFE-DKVFWTDII  309 (400)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCCC---EEEEECSSTTSSEEEEEEET-TEEEEEESS
T ss_pred             EEEEEeCCCEEEEEECCCCEEEEEeCCCCcc---EEEEeCCCCCCCCEEEEEeC-CEEEEecCC
Confidence            9999999999999999999999999987532   223222  234689999965 468888876

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.75  E-value=4.1e-16  Score=143.62  Aligned_cols=220  Identities=10%  Similarity=0.049  Sum_probs=162.1

Q ss_pred             CCcEEEEecCCeEEEEe-CCc---eEEEEecCCCcccCeEEcC-CCCEEEEeCC-CcEEEEcCCC--c-EEEeeecCCcc
Q 017371           89 NGVIYTATRDGWIKRLQ-DGT---WVNWKFIDSQTLVGLTSTK-EGHLIICDNA-NGLHKVSEDG--V-ENFLSYVNGSK  159 (372)
Q Consensus        89 ~G~l~v~~~~g~i~~~~-~g~---~~~~~~~~~~p~~gl~~d~-dG~l~v~~~~-~gv~~~~~~g--~-~~l~~~~~~~~  159 (372)
                      +..|++++ ...|.+++ ++.   ..........+. ++.+++ +|+||++|.. ..|++++.+|  . +.+...    .
T Consensus         4 ~p~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~~-~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~----~   77 (318)
T 3sov_A            4 APLLLYAN-RRDLRLVDATNGKENATIVVGGLEDAA-AVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVS----G   77 (318)
T ss_dssp             CCEEEEEC-EEEEEEEETTCTTSCCEEEEEEEEEEE-EEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEE----C
T ss_pred             ccEEEEEc-cCeEEEEECCCCceEEEEEecCCCccE-EEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcC----C
Confidence            44677776 35699998 543   333334445677 899985 5899999976 4588888544  2 222221    2


Q ss_pred             cccccceEEcc-CCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEe-CCccCcceEEEecCCCEEEEEe
Q 017371          160 LRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDEDYVVVCE  237 (372)
Q Consensus       160 ~~~~~~l~~d~-dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~-~~~~~~~gi~~~~dg~~l~v~~  237 (372)
                      +..|.++++|. +|+||++|.                 ..++|.++++++...+.+. ..+..|++++++++++.+||++
T Consensus        78 l~~p~glavd~~~g~ly~~d~-----------------~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td  140 (318)
T 3sov_A           78 LLSPDGLACDWLGEKLYWTDS-----------------ETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTD  140 (318)
T ss_dssp             CSCCCEEEEETTTTEEEEEET-----------------TTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEE
T ss_pred             CCCccEEEEEcCCCeEEEEEC-----------------CCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEe
Confidence            35788999995 789999986                 4578999999865555554 6788999999999888899999


Q ss_pred             CC-CCeEEEEEccCCCCcceeeeccCCCCCCceeEEcC-CCCEEEEEecCchhHHHHhhcchhHHHHHHhcCcccccccc
Q 017371          238 SW-KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAP-DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFIT  315 (372)
Q Consensus       238 ~~-~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~-~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~  315 (372)
                      .+ ..+|++++++|..   ...+....-..|++|++|+ +|+||+++..                               
T Consensus       141 ~~~~~~I~r~~~dG~~---~~~~~~~~l~~Pnglavd~~~~~lY~aD~~-------------------------------  186 (318)
T 3sov_A          141 WGEVPKIERAGMDGSS---RFIIINSEIYWPNGLTLDYEEQKLYWADAK-------------------------------  186 (318)
T ss_dssp             CSSSCEEEEEETTSCS---CEEEECSSCSCEEEEEEETTTTEEEEEETT-------------------------------
T ss_pred             cCCCCEEEEEEcCCCC---eEEEEECCCCCccEEEEeccCCEEEEEECC-------------------------------
Confidence            75 6899999998743   2223322234699999997 6789999987                               


Q ss_pred             CCCceEEEEECCCCcEEEEEECCCCCeeccceeeEEECCEEEEEeCCCCeEEEEeC
Q 017371          316 LGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL  371 (372)
Q Consensus       316 ~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~igs~~~~~i~~~~~  371 (372)
                         .+.|.+++.+|+..+.+....   +..+.++..+++.||.....++.|.+++.
T Consensus       187 ---~~~I~~~d~dG~~~~~~~~~~---~~~P~glav~~~~lywtd~~~~~V~~~~~  236 (318)
T 3sov_A          187 ---LNFIHKSNLDGTNRQAVVKGS---LPHPFALTLFEDILYWTDWSTHSILACNK  236 (318)
T ss_dssp             ---TTEEEEEETTSCSCEEEECSC---CSCEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred             ---CCEEEEEcCCCCceEEEecCC---CCCceEEEEeCCEEEEEecCCCeEEEEEC
Confidence               568999998886655554321   44677888888999999999999999875

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.75  E-value=2.8e-16  Score=157.43  Aligned_cols=185  Identities=14%  Similarity=0.086  Sum_probs=145.8

Q ss_pred             cCCCCCCCccEEEcC-CCcEEEEe-cCCeEEEEe-CC-ceEEEEe-cCCCcccCeEEcC-CCCEEEEeCC-CcEEEEcCC
Q 017371           74 GEGSVNHPEDASMDK-NGVIYTAT-RDGWIKRLQ-DG-TWVNWKF-IDSQTLVGLTSTK-EGHLIICDNA-NGLHKVSED  146 (372)
Q Consensus        74 ~~g~~~~p~~i~~d~-~G~l~v~~-~~g~i~~~~-~g-~~~~~~~-~~~~p~~gl~~d~-dG~l~v~~~~-~gv~~~~~~  146 (372)
                      +.+.+..|.+|++|+ +|.||+++ .+++|++++ +| ..+.+.. ....|. ||++|. .|+||+++.. ..|.+++.+
T Consensus        32 ~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~-GlAvD~~~~~LY~tD~~~~~I~v~~~d  110 (628)
T 4a0p_A           32 PLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPE-GMAVDWLGKNLYWADTGTNRIEVSKLD  110 (628)
T ss_dssp             CCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCC-EEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             EcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcc-eEEEEeCCCEEEEEECCCCEEEEEecC
Confidence            333467899999995 78999999 689999999 55 4455444 335799 999995 5789999986 457777766


Q ss_pred             C--cEEEeeecCCcccccccceEEcc-CCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcce
Q 017371          147 G--VENFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANG  223 (372)
Q Consensus       147 g--~~~l~~~~~~~~~~~~~~l~~d~-dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~g  223 (372)
                      |  .+.+..    ..+..|++|++|+ +|.||++|.+                ..++|+++++++...+.+.+++..|+|
T Consensus       111 G~~~~~l~~----~~l~~P~~iavdp~~G~lY~tD~g----------------~~~~I~r~~~dG~~~~~l~~~~~~P~G  170 (628)
T 4a0p_A          111 GQHRQVLVW----KDLDSPRALALDPAEGFMYWTEWG----------------GKPKIDRAAMDGSERTTLVPNVGRANG  170 (628)
T ss_dssp             STTCEEEEC----SSCCCEEEEEEETTTTEEEEEECS----------------SSCEEEEEETTSCSCEEEECSCSSEEE
T ss_pred             CCcEEEEEe----CCCCCcccEEEccCCCeEEEeCCC----------------CCCEEEEEeCCCCceEEEECCCCCcce
Confidence            6  455542    2245789999997 7899999863                367999999987777788889999999


Q ss_pred             EEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 017371          224 VALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       224 i~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~  284 (372)
                      ++++++++.|||++...++|++++++|...   +.+...+ ..|.+++++. +++|++++.
T Consensus       171 lalD~~~~~LY~aD~~~~~I~~~d~dG~~~---~v~~~~l-~~P~glav~~-~~ly~tD~~  226 (628)
T 4a0p_A          171 LTIDYAKRRLYWTDLDTNLIESSNMLGLNR---EVIADDL-PHPFGLTQYQ-DYIYWTDWS  226 (628)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSCSC---EEEEECC-SCEEEEEEET-TEEEEEETT
T ss_pred             EEEccccCEEEEEECCCCEEEEEcCCCCce---EEeeccC-CCceEEEEEC-CEEEEecCC
Confidence            999999999999999999999999988533   3444333 3699999997 789999976

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.75  E-value=6.7e-17  Score=145.94  Aligned_cols=183  Identities=14%  Similarity=0.252  Sum_probs=134.7

Q ss_pred             CCCCCccEEE-cCCCcEEEEec--CCeEEEEe-CCceE-EEEe-cCCCcccCeEEcCCCCEEEEeCC-CcEEEEcCCC--
Q 017371           77 SVNHPEDASM-DKNGVIYTATR--DGWIKRLQ-DGTWV-NWKF-IDSQTLVGLTSTKEGHLIICDNA-NGLHKVSEDG--  147 (372)
Q Consensus        77 ~~~~p~~i~~-d~~G~l~v~~~--~g~i~~~~-~g~~~-~~~~-~~~~p~~gl~~d~dG~l~v~~~~-~gv~~~~~~g--  147 (372)
                      .+..|.++++ +++|+||+++.  +++|.+++ +|+.. .+.. ....|. +++++++|++||++.. ..|.+++.+|  
T Consensus        75 ~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~-~i~~~~~g~l~v~~~~~~~i~~~~~~g~~  153 (286)
T 1q7f_A           75 QLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFGATILQHPR-GVTVDNKGRIIVVECKVMRVIIFDQNGNV  153 (286)
T ss_dssp             CBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTSCEEEEECTTTCSCEE-EEEECTTSCEEEEETTTTEEEEECTTSCE
T ss_pred             cccCceEEEEEcCCCeEEEEcCCCCCEEEEECCCCcEEEEecCccCCCce-EEEEeCCCCEEEEECCCCEEEEEcCCCCE
Confidence            3567999999 58999999983  78999999 66543 3322 234688 9999999999999865 5688998666  


Q ss_pred             cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCC--ccCcceEE
Q 017371          148 VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG--FYFANGVA  225 (372)
Q Consensus       148 ~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~--~~~~~gi~  225 (372)
                      ...+...   ..+..|++|+++++|++|+++.                 ..++|+++|+++.....+...  +..|.+++
T Consensus       154 ~~~~~~~---~~~~~p~~i~~~~~g~l~v~~~-----------------~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~  213 (286)
T 1q7f_A          154 LHKFGCS---KHLEFPNGVVVNDKQEIFISDN-----------------RAHCVKVFNYEGQYLRQIGGEGITNYPIGVG  213 (286)
T ss_dssp             EEEEECT---TTCSSEEEEEECSSSEEEEEEG-----------------GGTEEEEEETTCCEEEEESCTTTSCSEEEEE
T ss_pred             EEEeCCC---CccCCcEEEEECCCCCEEEEEC-----------------CCCEEEEEcCCCCEEEEEccCCccCCCcEEE
Confidence            3333211   2235688999999999999875                 367899999875444444322  46799999


Q ss_pred             EecCCCEEEEEeCCCC-eEEEEEccCCCCcceeeeccC-CCCCCceeEEcCCCCEEEEEec
Q 017371          226 LSRDEDYVVVCESWKF-RCRKYWLKGERKGKLETFAEN-LPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       226 ~~~dg~~l~v~~~~~~-~i~~~~~~g~~~~~~~~~~~~-~~g~p~~i~~d~~G~lwva~~~  284 (372)
                      ++++|+ +|+++..++ +|.+|+.++...   ..+... ....|.+++++++|++||++..
T Consensus       214 ~d~~G~-l~v~~~~~~~~i~~~~~~g~~~---~~~~~~~~~~~~~~i~~~~~g~l~vs~~~  270 (286)
T 1q7f_A          214 INSNGE-ILIADNHNNFNLTIFTQDGQLI---SALESKVKHAQCFDVALMDDGSVVLASKD  270 (286)
T ss_dssp             ECTTCC-EEEEECSSSCEEEEECTTSCEE---EEEEESSCCSCEEEEEEETTTEEEEEETT
T ss_pred             ECCCCC-EEEEeCCCCEEEEEECCCCCEE---EEEcccCCCCcceeEEECCCCcEEEECCC
Confidence            999996 999998876 999999765422   222222 1224789999999999999643

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.74  E-value=2.9e-15  Score=138.51  Aligned_cols=236  Identities=13%  Similarity=0.121  Sum_probs=165.0

Q ss_pred             CCCccEEEcCCC-cEEEEec-------CCeEEEEe--CCceEEEEecCCCcccCeEEcCCCC-EEEEeCC-CcEEEEc-C
Q 017371           79 NHPEDASMDKNG-VIYTATR-------DGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA-NGLHKVS-E  145 (372)
Q Consensus        79 ~~p~~i~~d~~G-~l~v~~~-------~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~-l~v~~~~-~gv~~~~-~  145 (372)
                      .+|.+++++++| .+|+++.       ++.|+.++  +++..........|. +++++++|+ +|+++.. ..+..+| .
T Consensus        41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~v~~~~~~~v~~~d~~  119 (353)
T 3vgz_A           41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPF-GATINNTTQTLWFGNTVNSAVTAIDAK  119 (353)
T ss_dssp             SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCC-SEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcc-eEEECCCCCEEEEEecCCCEEEEEeCC
Confidence            378899999987 6888873       56899999  566544444556788 999999997 8888765 4588888 5


Q ss_pred             CC--cEEEeeecCC----cccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeC-C
Q 017371          146 DG--VENFLSYVNG----SKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-G  217 (372)
Q Consensus       146 ~g--~~~l~~~~~~----~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~-~  217 (372)
                      ++  ...+......    .....+.+++++++|+ +|+++..                ..+.|+.+|.++++...... .
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~----------------~~~~i~~~d~~~~~~~~~~~~~  183 (353)
T 3vgz_A          120 TGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIG----------------KESVIWVVDGGNIKLKTAIQNT  183 (353)
T ss_dssp             TCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEES----------------SSCEEEEEETTTTEEEEEECCC
T ss_pred             CCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecC----------------CCceEEEEcCCCCceEEEecCC
Confidence            66  3333221110    0112367899999986 7887532                35789999999888776655 4


Q ss_pred             ccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeecc-CCCCCCceeEEcCCCC-EEEEEecCchhHHHHhhc
Q 017371          218 FYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAE-NLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNS  295 (372)
Q Consensus       218 ~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~-~~~g~p~~i~~d~~G~-lwva~~~~~~~~~~~~~~  295 (372)
                      ...+.++++++||+.+|+++. ++.|+.+++.+.+......... .....+.+++++++|+ +|+++..           
T Consensus       184 ~~~~~~~~~s~dg~~l~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-----------  251 (353)
T 3vgz_A          184 GKMSTGLALDSEGKRLYTTNA-DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSK-----------  251 (353)
T ss_dssp             CTTCCCCEEETTTTEEEEECT-TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESS-----------
T ss_pred             CCccceEEECCCCCEEEEEcC-CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCC-----------
Confidence            455899999999999999876 6789999986543221111111 1233567799999997 8888765           


Q ss_pred             chhHHHHHHhcCccccccccCCCceEEEEECC-CCcEEEEEECCCCCeeccceeeEEE--CCEEEEEeCCCCeEEEEeCC
Q 017371          296 SKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQV--DNHLYVISLTSNFIGKVQLS  372 (372)
Q Consensus       296 ~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~--~g~L~igs~~~~~i~~~~~~  372 (372)
                                             .+.|..+|. +++.+..+..+.+      ..+...  +++||+++...+.|.+++++
T Consensus       252 -----------------------~~~v~~~d~~~~~~~~~~~~~~~------~~~~~s~dg~~l~v~~~~~~~v~~~d~~  302 (353)
T 3vgz_A          252 -----------------------AAEVLVVDTRNGNILAKVAAPES------LAVLFNPARNEAYVTHRQAGKVSVIDAK  302 (353)
T ss_dssp             -----------------------SSEEEEEETTTCCEEEEEECSSC------CCEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             -----------------------CCEEEEEECCCCcEEEEEEcCCC------ceEEECCCCCEEEEEECCCCeEEEEECC
Confidence                                   467888885 5788777765432      234444  45799999989999998863

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.74  E-value=3.8e-16  Score=161.32  Aligned_cols=226  Identities=14%  Similarity=0.178  Sum_probs=162.5

Q ss_pred             CccEEEcCCCcEEEEecCCeEEEEe--CCceEEEEec---------CCCcccCeEEcCCCC-EEEEeCCCcEEEEc-CCC
Q 017371           81 PEDASMDKNGVIYTATRDGWIKRLQ--DGTWVNWKFI---------DSQTLVGLTSTKEGH-LIICDNANGLHKVS-EDG  147 (372)
Q Consensus        81 p~~i~~d~~G~l~v~~~~g~i~~~~--~g~~~~~~~~---------~~~p~~gl~~d~dG~-l~v~~~~~gv~~~~-~~g  147 (372)
                      ..+|+.|++|.||+|+.++.|.+++  .++++.+...         ..... +++.|++|+ ||++....||++++ .++
T Consensus       359 V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~-~i~~d~~g~~lWigt~~~Gl~~~d~~~~  437 (795)
T 4a2l_A          359 VSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIK-AVYVDEKKSLVYIGTHAGGLSILHRNSG  437 (795)
T ss_dssp             EEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEE-EEEEETTTTEEEEEETTTEEEEEETTTC
T ss_pred             eEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEE-EEEEcCCCCEEEEEeCcCceeEEeCCCC
Confidence            4578899999999999887899999  5666665421         13345 888999999 99998778999999 556


Q ss_pred             -cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCC-----c--c
Q 017371          148 -VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-----F--Y  219 (372)
Q Consensus       148 -~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~-----~--~  219 (372)
                       .+.+....+......+..+..|++|+||++.                   .++|+++|+++++++.+...     +  .
T Consensus       438 ~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-------------------~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~  498 (795)
T 4a2l_A          438 QVENFNQRNSQLVNENVYAILPDGEGNLWLGT-------------------LSALVRFNPEQRSFTTIEKEKDGTPVVSK  498 (795)
T ss_dssp             CEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-------------------SSCEEEEETTTTEEEECCBCTTCCBCCCC
T ss_pred             cEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-------------------cCceeEEeCCCCeEEEccccccccccCCc
Confidence             6555432111223456789999999999973                   24699999998887765422     1  1


Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeecc--CCCC----CCceeEEcCCCCEEEEEecCchhHHHHh
Q 017371          220 FANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAE--NLPG----APDNINLAPDGTFWIAIIKLDARRMKIL  293 (372)
Q Consensus       220 ~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~--~~~g----~p~~i~~d~~G~lwva~~~~~~~~~~~~  293 (372)
                      ....+..+++|+ +|++..  ..|++++.++.+.    .+..  ...+    ....|..|++|+||+++..         
T Consensus       499 ~i~~i~~d~~g~-lWigt~--~Gl~~~~~~~~~~----~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~---------  562 (795)
T 4a2l_A          499 QITTLFRDSHKR-LWIGGE--EGLSVFKQEGLDI----QKASILPVSNVTKLFTNCIYEASNGIIWVGTRE---------  562 (795)
T ss_dssp             CEEEEEECTTCC-EEEEES--SCEEEEEEETTEE----EECCCSCSCGGGGSCEEEEEECTTSCEEEEESS---------
T ss_pred             eEEEEEECCCCC-EEEEeC--CceEEEeCCCCeE----EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC---------
Confidence            234566777786 888875  5699998865432    1211  1112    2345888999999999875         


Q ss_pred             hcchhHHHHHHhcCccccccccCCCceEEEEECCCCcEEEEEECCCCCeeccceeeEEE-CCEEEEEeCCCCeEEEEeC
Q 017371          294 NSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL  371 (372)
Q Consensus       294 ~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~L~igs~~~~~i~~~~~  371 (372)
                                                 ++++++++.+.+..+...+|...+.+.++.++ +|+||+++  .+.|.+++.
T Consensus       563 ---------------------------Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t--~~Gl~~~~~  612 (795)
T 4a2l_A          563 ---------------------------GFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLST--NRGISCFNP  612 (795)
T ss_dssp             ---------------------------CEEEEETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEEE--TTEEEEEET
T ss_pred             ---------------------------CceeECCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEEc--CCceEEEcC
Confidence                                       68999988777777776666655567888887 69999999  467777764

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=99.71  E-value=6.7e-15  Score=135.99  Aligned_cols=257  Identities=15%  Similarity=0.213  Sum_probs=166.8

Q ss_pred             cCceEecCCCCCCCccEEEcCCCcEEEEec-CCeEEEEe--CCceEEEE-------ecCCCcccCeEEcCC----CCEEE
Q 017371           68 QDFIKVGEGSVNHPEDASMDKNGVIYTATR-DGWIKRLQ--DGTWVNWK-------FIDSQTLVGLTSTKE----GHLII  133 (372)
Q Consensus        68 ~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~-~g~i~~~~--~g~~~~~~-------~~~~~p~~gl~~d~d----G~l~v  133 (372)
                      ..++++.+| +..|++|++.++|.||++.. .|+|++++  +|+.+.+.       ...+.++ ||+++|+    |.||+
T Consensus        22 ~~~~~va~g-L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~Gll-Gia~~Pdf~~~g~lYv   99 (347)
T 3das_A           22 KVLRTVATG-LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLL-GIALSPDYASDHMVYA   99 (347)
T ss_dssp             EEEEEEECC-CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEE-EEEECTTHHHHCEEEE
T ss_pred             ceeEEeecC-CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCce-eeEeccccccCCEEEE
Confidence            367778877 89999999999999999996 89999998  45554432       1234677 9999984    88999


Q ss_pred             EeC---CCcEEEEc-CC-----C----cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCe
Q 017371          134 CDN---ANGLHKVS-ED-----G----VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQ  200 (372)
Q Consensus       134 ~~~---~~gv~~~~-~~-----g----~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~  200 (372)
                      +..   ...|.++. ..     .    .+.+....+....+....|++++||+|||+....-.  ..  .........|.
T Consensus       100 ~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~--~~--~~qd~~~~~G~  175 (347)
T 3das_A          100 YFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGD--TG--LSQDRKSLGGK  175 (347)
T ss_dssp             EEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTC--GG--GTTCTTCSTTC
T ss_pred             EEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCC--Cc--cccCCCCCCCE
Confidence            742   34688887 32     1    344544444445577888999999999998532100  00  00001234689


Q ss_pred             EEEEeCCCC--------eEEEEeCCccCcceEEEecCCCEEEEEeCCCC---eEEEEEccCCCCccee------------
Q 017371          201 LLKYDPSSN--------ITTLVADGFYFANGVALSRDEDYVVVCESWKF---RCRKYWLKGERKGKLE------------  257 (372)
Q Consensus       201 v~~~d~~t~--------~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~---~i~~~~~~g~~~~~~~------------  257 (372)
                      |+|+++++.        ..+++..++.+|+|++++++|+ ||+++.+.+   .|.++. .|...+-..            
T Consensus       176 IlRi~~dG~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~-L~~~d~g~~~~deln~i~-~G~nyGwP~~~g~~~~~~~~~  253 (347)
T 3das_A          176 ILRMTPDGEPAPGNPFPGSPVYSYGHRNVQGLAWDDKQR-LFASEFGQDTWDELNAIK-PGDNYGWPEAEGKGGGSGFHD  253 (347)
T ss_dssp             EEEECTTSSBCTTCSSTTCCEEEBCCSBCCEEEECTTCC-EEEEECCSSSCEEEEEEC-TTCBCCTTTCCSSCCCTTCCC
T ss_pred             EEEEeCCCCccCCCCCCCCeEEeeCCCCcceEEECCCCC-EEEEecCCCCCceeeEEc-CCCEecCCcccCCCCCccccC
Confidence            999999854        3567888999999999999876 999998653   455553 232211100            


Q ss_pred             eeccCCC--CCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEEC--CCC---c
Q 017371          258 TFAENLP--GAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVA--EDG---T  330 (372)
Q Consensus       258 ~~~~~~~--g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~--~~g---~  330 (372)
                      ....-.+  .-|.|+++. +|.+|++...                                  ...|.++.  .++   +
T Consensus       254 P~~~~~~~~~ap~G~~~~-~g~~~~~~l~----------------------------------~~~l~~v~~~~~~~~~~  298 (347)
T 3das_A          254 PVAQWSTDEASPSGIAYA-EGSVWMAGLR----------------------------------GERLWRIPLKGTAAAAD  298 (347)
T ss_dssp             CSEEECTTTCCEEEEEEE-TTEEEEEEST----------------------------------TCSEEEEEEETTEESSC
T ss_pred             CcEecCCCCCCCcceEEE-cCceeecccc----------------------------------CCEEEEEEecCCceecc
Confidence            0000011  246788887 5899999876                                  23454443  222   1


Q ss_pred             EEEEEECCCCCeeccceeeEEE-CCEEEEEeCCCC----------eEEEEeC
Q 017371          331 IIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSN----------FIGKVQL  371 (372)
Q Consensus       331 ~~~~~~~~~g~~~~~~t~~~~~-~g~L~igs~~~~----------~i~~~~~  371 (372)
                      ....+.+.    ...+..+... +|.||+++.+.+          +|.|+.+
T Consensus       299 ~e~~l~~~----~gR~~dv~~~pDG~lyv~td~~~g~g~p~~~ddri~r~~~  346 (347)
T 3das_A          299 PQAFLEGE----YGRLRTVAPAGGDKLWLVTSNTDGRGDAKGGDDRILELEV  346 (347)
T ss_dssp             CEEESTTT----SSCEEEEEEEETTEEEEEECTTSSSSCCCTTCSCEEEEEE
T ss_pred             eEEeecCC----CCCccEEEECCCCcEEEEEcCCCCCCCCCCCCCEEEEEeC
Confidence            12222222    2246777776 799999987544          6887765

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.71  E-value=2.3e-15  Score=139.21  Aligned_cols=232  Identities=7%  Similarity=-0.034  Sum_probs=160.4

Q ss_pred             CCccEEEcCCCcEEEEe-cCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCCEEEEe-CCCcEEEEc-CCC-cE-EEe
Q 017371           80 HPEDASMDKNGVIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICD-NANGLHKVS-EDG-VE-NFL  152 (372)
Q Consensus        80 ~p~~i~~d~~G~l~v~~-~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~l~v~~-~~~gv~~~~-~~g-~~-~l~  152 (372)
                      .|++++++ ++.+|+++ .++.|..+|  +++..........|. +++++++|+|||++ ....|.++| .++ +. .+.
T Consensus        45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~-~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~  122 (328)
T 3dsm_A           45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPR-YIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIE  122 (328)
T ss_dssp             CEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEE-EEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEE
T ss_pred             cceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCc-EEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEE
Confidence            57889886 57899998 578899999  566533234567899 99998889999998 456799999 556 33 232


Q ss_pred             eecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCE
Q 017371          153 SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDY  232 (372)
Q Consensus       153 ~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~  232 (372)
                      ..........|.+|++ .++++|+++.+                ..+.|.++|++++++.........|+++++++||+ 
T Consensus       123 ~g~~~~~~~~p~~i~~-~~~~lyv~~~~----------------~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~-  184 (328)
T 3dsm_A          123 CPDMDMESGSTEQMVQ-YGKYVYVNCWS----------------YQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNK-  184 (328)
T ss_dssp             CTTCCTTTCBCCCEEE-ETTEEEEEECT----------------TCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSE-
T ss_pred             cCCccccCCCcceEEE-ECCEEEEEcCC----------------CCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCC-
Confidence            2111112236889999 67899998641                25689999999888766555556799999999997 


Q ss_pred             EEEEeCCC----------CeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCC-CEEEEEecCchhHHHHhhcchhHHH
Q 017371          233 VVVCESWK----------FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDG-TFWIAIIKLDARRMKILNSSKLIKH  301 (372)
Q Consensus       233 l~v~~~~~----------~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G-~lwva~~~~~~~~~~~~~~~~~~r~  301 (372)
                      +|++..+.          +.|++++..+.+...  .+.-.....|.+++++++| .+|+++.                  
T Consensus       185 l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~--~~~~~~g~~p~~la~~~d~~~lyv~~~------------------  244 (328)
T 3dsm_A          185 MWTITDGGYEGSPYGYEAPSLYRIDAETFTVEK--QFKFKLGDWPSEVQLNGTRDTLYWINN------------------  244 (328)
T ss_dssp             EEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEE--EEECCTTCCCEEEEECTTSCEEEEESS------------------
T ss_pred             EEEEECCCccCCccccCCceEEEEECCCCeEEE--EEecCCCCCceeEEEecCCCEEEEEcc------------------
Confidence            88887765          789999986543221  2211112269999999976 5777653                  


Q ss_pred             HHHhcCccccccccCCCceEEEEECCC-CcEEEEEECCCCCeeccceeeEEE--CCEEEEEe----CCCCeEEEEeCC
Q 017371          302 VLAAYPKLFSQFITLGGGAHLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQV--DNHLYVIS----LTSNFIGKVQLS  372 (372)
Q Consensus       302 ~~~~~p~~~~~~~~~~~~~~v~~~~~~-g~~~~~~~~~~g~~~~~~t~~~~~--~g~L~igs----~~~~~i~~~~~~  372 (372)
                                         .|+.+|.+ +++...-..+.+  ...+.++..+  +++||+++    ..++.|.+++.+
T Consensus       245 -------------------~v~~~d~~t~~~~~~~~~~~~--~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~  301 (328)
T 3dsm_A          245 -------------------DIWRMPVEADRVPVRPFLEFR--DTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ  301 (328)
T ss_dssp             -------------------SEEEEETTCSSCCSSCSBCCC--SSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred             -------------------EEEEEECCCCceeeeeeecCC--CCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence                               36778864 444210001111  2356777775  58999999    778899998753

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=99.70  E-value=2.3e-15  Score=136.62  Aligned_cols=187  Identities=13%  Similarity=0.130  Sum_probs=128.8

Q ss_pred             CCCCccEEEcC-CCcEEEEe-cCCeEEEEe-C-CceEEEEecC----C----CcccCeEE---cCCCCEEEE-eC-----
Q 017371           78 VNHPEDASMDK-NGVIYTAT-RDGWIKRLQ-D-GTWVNWKFID----S----QTLVGLTS---TKEGHLIIC-DN-----  136 (372)
Q Consensus        78 ~~~p~~i~~d~-~G~l~v~~-~~g~i~~~~-~-g~~~~~~~~~----~----~p~~gl~~---d~dG~l~v~-~~-----  136 (372)
                      -.-||++..|+ +|.+|+++ .+|+|.+++ + +..+.+....    +    .+. ||.+   |++|+|||+ +.     
T Consensus        12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~s-Gl~~~~~D~~grL~vv~~~~~af~   90 (334)
T 2p9w_A           12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMS-GLSLLTHDNSKRLFAVMKNAKSFN   90 (334)
T ss_dssp             TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEE-EEEESSSSSCCEEEEEEEETTTTC
T ss_pred             ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceee-EEEEeccCCCCcEEEEEccccccc
Confidence            45799999985 78999999 799999999 4 5555542221    1    356 9999   799999995 42     


Q ss_pred             --------CCcEEEEc-C---CC-cEEEee--ecC-------CcccccccceEEccCCcEEEEeCCCCCCCccccccccc
Q 017371          137 --------ANGLHKVS-E---DG-VENFLS--YVN-------GSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILE  194 (372)
Q Consensus       137 --------~~gv~~~~-~---~g-~~~l~~--~~~-------~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~  194 (372)
                              ...|+++| .   +| ......  ...       +.....+++|++|++|++||+++.              
T Consensus        91 ~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~--------------  156 (334)
T 2p9w_A           91 FADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFAL--------------  156 (334)
T ss_dssp             TTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEE--------------
T ss_pred             ccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCC--------------
Confidence                    35699999 5   46 333322  111       113346899999999999999762              


Q ss_pred             ccCCCeEEEEeCCCCeEEEEe------CCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeecc--C---C
Q 017371          195 GKPHGQLLKYDPSSNITTLVA------DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAE--N---L  263 (372)
Q Consensus       195 ~~~~g~v~~~d~~t~~~~~~~------~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~--~---~  263 (372)
                        +-+.|+|++++......+.      .....+|||+++|||+.|++.++ .++|++|++..+...  +.-..  .   .
T Consensus       157 --~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~~pv~~--~v~~~~~G~~~~  231 (334)
T 2p9w_A          157 --GMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVSKPYAW--PEPVKINGDFGT  231 (334)
T ss_dssp             --SSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECSSSSCC--CEECEESSCCCC
T ss_pred             --CCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCCCCcce--eecccccCCccc
Confidence              2178999999855454432      12334789999999999999998 889999998743210  11111  1   1


Q ss_pred             CCCCcee-EEcCCCCE-EEEEec
Q 017371          264 PGAPDNI-NLAPDGTF-WIAIIK  284 (372)
Q Consensus       264 ~g~p~~i-~~d~~G~l-wva~~~  284 (372)
                      ...|++| ....+|++ +|+...
T Consensus       232 ~~~~dgilp~~~~G~vllV~~~~  254 (334)
T 2p9w_A          232 LSGTEKIVTVPVGNESVLVGARA  254 (334)
T ss_dssp             CTTEEEEEEEEETTEEEEEEEET
T ss_pred             ccCcccccccccCCEEEEEEcCC
Confidence            2248895 66778987 777765

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.70  E-value=7.2e-16  Score=154.27  Aligned_cols=182  Identities=16%  Similarity=0.159  Sum_probs=134.6

Q ss_pred             CCCCccEEEcC-CCcEEEEe-cCCeEEEEe-CCc--eEEEE-ecCCCcccCeEEcC-CCCEEEEeCCC-cEEEEcCCC--
Q 017371           78 VNHPEDASMDK-NGVIYTAT-RDGWIKRLQ-DGT--WVNWK-FIDSQTLVGLTSTK-EGHLIICDNAN-GLHKVSEDG--  147 (372)
Q Consensus        78 ~~~p~~i~~d~-~G~l~v~~-~~g~i~~~~-~g~--~~~~~-~~~~~p~~gl~~d~-dG~l~v~~~~~-gv~~~~~~g--  147 (372)
                      +..|..|+++. +|.||+++ .+++|++++ +|.  .+.+. .....|. ||++|. .++||+++... .|.+++.+|  
T Consensus        39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~-GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~  117 (619)
T 3s94_A           39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPD-GLACDWLGEKLYWTDSETNRIEVSNLDGSL  117 (619)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEE-EEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcC-eEEEEecCCEEEEEeCCCCEEEEEECCCCC
Confidence            67899999995 77999999 688999999 654  23333 3346899 999997 56899999774 477777677  


Q ss_pred             cEEEeeecCCcccccccceEEccC-CcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEe-CCccCcceEE
Q 017371          148 VENFLSYVNGSKLRFANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVA  225 (372)
Q Consensus       148 ~~~l~~~~~~~~~~~~~~l~~d~d-G~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~-~~~~~~~gi~  225 (372)
                      .+.+..    ..+..|++|++|+. |.||+||..                ..++|++.+++....+.+. ..+..|+|++
T Consensus       118 ~~~l~~----~~l~~P~~Iavdp~~g~ly~tD~g----------------~~~~I~r~~~dG~~~~~l~~~~~~~P~Gla  177 (619)
T 3s94_A          118 RKVLFW----QELDQPRAIALDPSSGFMYWTDWG----------------EVPKIERAGMDGSSRFIIINSEIYWPNGLT  177 (619)
T ss_dssp             CEEEEC----SSCSCCCCEEEETTTTEEEEEECS----------------SSCEEEEEETTSCSCEEEECSSCSSEEEEE
T ss_pred             EEEEEe----CCCCCCceEEEecCCCeEEEeccC----------------CCCEEEEEECCCCceEEEEeCCCCCCcEEE
Confidence            455542    23467999999985 899999863                3578999998855454444 5788999999


Q ss_pred             EecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 017371          226 LSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       226 ~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~  284 (372)
                      ++++++.|||+++..++|++++++|..   .+.+.......|.+|+++++ ++|++++.
T Consensus       178 ld~~~~~LY~aD~~~~~I~~~~~dG~~---~~~~~~~~~~~P~gi~~~~~-~ly~td~~  232 (619)
T 3s94_A          178 LDYEEQKLYWADAKLNFIHKSNLDGTN---RQAVVKGSLPHPFALTLFED-ILYWTDWS  232 (619)
T ss_dssp             EETTTTEEEEEETTTCCEEEESSSCCE---EC---------CCCEEESSS-EEEEECTT
T ss_pred             EEccCCEEEEEeCCCCeEEEecCCCCc---cEEEEeCCCCCceEEEEeCC-EEEEecCC
Confidence            999988999999999999999998742   22233222346999999987 89999876

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.70  E-value=3.3e-15  Score=142.50  Aligned_cols=183  Identities=15%  Similarity=0.187  Sum_probs=129.4

Q ss_pred             CCCCccEEEcCCC-cEEEEecCC--eEEEEe-CC-c-eEEE----EecCCCcccCeEEcC-CCCEEEEeCCCcEEEEc-C
Q 017371           78 VNHPEDASMDKNG-VIYTATRDG--WIKRLQ-DG-T-WVNW----KFIDSQTLVGLTSTK-EGHLIICDNANGLHKVS-E  145 (372)
Q Consensus        78 ~~~p~~i~~d~~G-~l~v~~~~g--~i~~~~-~g-~-~~~~----~~~~~~p~~gl~~d~-dG~l~v~~~~~gv~~~~-~  145 (372)
                      ...|+ ++++++| .||+++.++  +|++++ .+ . ...+    ......|. ++++++ +|+||+++....+++++ .
T Consensus       171 ~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~-~iav~p~~g~lyv~d~~~~I~~~d~~  248 (409)
T 3hrp_A          171 FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIG-AVALDETEEWLYFVDSNKNFGRFNVK  248 (409)
T ss_dssp             CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCC-BCEECTTSSEEEEECTTCEEEEEETT
T ss_pred             CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcE-EEEEeCCCCeEEEEECCCcEEEEECC
Confidence            35677 9999988 588888544  899999 33 2 2333    11456788 999999 78999987655699999 4


Q ss_pred             CC-cEEEee-ecCCccccccc-ceEEcc-CCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeC-C---
Q 017371          146 DG-VENFLS-YVNGSKLRFAN-DVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-G---  217 (372)
Q Consensus       146 ~g-~~~l~~-~~~~~~~~~~~-~l~~d~-dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~-~---  217 (372)
                      ++ ...+.. ...+.....|. +|++++ +|+||++|.                 ..++|++++++ ++...+.. .   
T Consensus       249 ~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~-----------------~~~~I~~~~~~-g~~~~~~g~~~~~  310 (409)
T 3hrp_A          249 TQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ-----------------NLSSVYKITPD-GECEWFCGSATQK  310 (409)
T ss_dssp             TCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET-----------------TTTEEEEECTT-CCEEEEEECTTCC
T ss_pred             CCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeC-----------------CCCEEEEEecC-CCEEEEEeCCCCC
Confidence            44 444321 11121112234 999999 689999986                 46789999987 44544432 2   


Q ss_pred             -----------ccCcceEEEecCCCEEEEEeC-CCCeEEEEEccCCCCcceeeeccC--------------CCCCCceeE
Q 017371          218 -----------FYFANGVALSRDEDYVVVCES-WKFRCRKYWLKGERKGKLETFAEN--------------LPGAPDNIN  271 (372)
Q Consensus       218 -----------~~~~~gi~~~~dg~~l~v~~~-~~~~i~~~~~~g~~~~~~~~~~~~--------------~~g~p~~i~  271 (372)
                                 +..|+|++++++|+ +|++++ .+++|.++++.+..   ...+...              ....|.+++
T Consensus       311 g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~~~~~~I~~~~~~~G~---v~~~~g~~~~~g~~~g~~~~~~~~~P~gia  386 (409)
T 3hrp_A          311 TVQDGLREEALFAQPNGMTVDEDGN-FYIVDGFKGYCLRKLDILDGY---VSTVAGQVDVASQIDGTPLEATFNYPYDIC  386 (409)
T ss_dssp             SCBCEEGGGCBCSSEEEEEECTTCC-EEEEETTTTCEEEEEETTTTE---EEEEEECTTCBSCCCBSTTTCCBSSEEEEE
T ss_pred             CcCCCcccccEeCCCeEEEEeCCCC-EEEEeCCCCCEEEEEECCCCE---EEEEeCCCCCCCcCCCChhceEeCCceEEE
Confidence                       56799999999998 999999 99999999954322   2222111              013599999


Q ss_pred             EcCCCCEEEEEec
Q 017371          272 LAPDGTFWIAIIK  284 (372)
Q Consensus       272 ~d~~G~lwva~~~  284 (372)
                      +|++|+|||++..
T Consensus       387 vd~~g~lyVad~~  399 (409)
T 3hrp_A          387 YDGEGGYWIAEAW  399 (409)
T ss_dssp             ECSSSEEEEEEST
T ss_pred             EcCCCCEEEEECC
Confidence            9999999999987

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.70  E-value=7e-16  Score=142.15  Aligned_cols=177  Identities=15%  Similarity=0.105  Sum_probs=127.7

Q ss_pred             CCCccEEEcC-CCcEEEEecCCeEEEEe-C-CceEEEEe-----cCCCcccCeEEcC-CCCEEEEeCC------------
Q 017371           79 NHPEDASMDK-NGVIYTATRDGWIKRLQ-D-GTWVNWKF-----IDSQTLVGLTSTK-EGHLIICDNA------------  137 (372)
Q Consensus        79 ~~p~~i~~d~-~G~l~v~~~~g~i~~~~-~-g~~~~~~~-----~~~~p~~gl~~d~-dG~l~v~~~~------------  137 (372)
                      ..|.+|++++ +|+||+++..++|++++ + ++++.+..     ....|. ++++|+ +|+|||++..            
T Consensus        80 ~~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~-~i~~d~~~G~l~v~d~~~~~~~~~~~~~~  158 (322)
T 2fp8_A           80 GRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLY-AVTVDQRTGIVYFTDVSTLYDDRGVQQIM  158 (322)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEE-EEEECTTTCCEEEEESCSSCCTTCHHHHH
T ss_pred             CCCceEEEcCCCCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccc-eEEEecCCCEEEEECCcccccccccceeh
Confidence            3689999996 89999999777799999 4 55555532     224678 999999 9999999854            


Q ss_pred             ------CcEEEEcC-CC-cEEEeeecCCcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCC
Q 017371          138 ------NGLHKVSE-DG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS  208 (372)
Q Consensus       138 ------~gv~~~~~-~g-~~~l~~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t  208 (372)
                            .++++++. ++ .+.+...     +..|++|+++++|+ ||++|.                 ..++|++|+.++
T Consensus       159 ~~~~~~g~v~~~d~~~~~~~~~~~~-----~~~p~gia~~~dg~~lyv~d~-----------------~~~~I~~~~~~~  216 (322)
T 2fp8_A          159 DTSDKTGRLIKYDPSTKETTLLLKE-----LHVPGGAEVSADSSFVLVAEF-----------------LSHQIVKYWLEG  216 (322)
T ss_dssp             HHTCCCEEEEEEETTTTEEEEEEEE-----ESCCCEEEECTTSSEEEEEEG-----------------GGTEEEEEESSS
T ss_pred             cccCCCceEEEEeCCCCEEEEeccC-----CccCcceEECCCCCEEEEEeC-----------------CCCeEEEEECCC
Confidence                  34888984 45 5544332     35789999999986 999876                 357899999864


Q ss_pred             ---CeEEEEeCCccCcceEEEecCCCEEEEEeCC----------CCeEEEEEccCCCCcceeeeccC--C-CCCCceeEE
Q 017371          209 ---NITTLVADGFYFANGVALSRDEDYVVVCESW----------KFRCRKYWLKGERKGKLETFAEN--L-PGAPDNINL  272 (372)
Q Consensus       209 ---~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~----------~~~i~~~~~~g~~~~~~~~~~~~--~-~g~p~~i~~  272 (372)
                         ++.+.+.. +..|+|++++++|+ +|+++..          ..+|.+|+.+|...   ..+...  . ...|.+++.
T Consensus       217 ~~~~~~~~~~~-~~gP~gi~~d~~G~-l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~---~~~~~~~g~~~~~~~~~~~  291 (322)
T 2fp8_A          217 PKKGTAEVLVK-IPNPGNIKRNADGH-FWVSSSEELDGNMHGRVDPKGIKFDEFGNIL---EVIPLPPPFAGEHFEQIQE  291 (322)
T ss_dssp             TTTTCEEEEEE-CSSEEEEEECTTSC-EEEEEEEETTSSTTSCEEEEEEEECTTSCEE---EEEECCTTTTTSCCCEEEE
T ss_pred             CcCCccceEEe-CCCCCCeEECCCCC-EEEEecCcccccccCCCccEEEEECCCCCEE---EEEECCCCCccccceEEEE
Confidence               34454443 22399999999997 9999865          46799998866422   222211  1 234677766


Q ss_pred             cCCCCEEEEEec
Q 017371          273 APDGTFWIAIIK  284 (372)
Q Consensus       273 d~~G~lwva~~~  284 (372)
                       .+|+|||++..
T Consensus       292 -~~g~L~v~~~~  302 (322)
T 2fp8_A          292 -HDGLLYIGTLF  302 (322)
T ss_dssp             -ETTEEEEECSS
T ss_pred             -eCCEEEEeecC
Confidence             47899999876

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.70  E-value=2.5e-15  Score=154.95  Aligned_cols=230  Identities=12%  Similarity=0.118  Sum_probs=157.9

Q ss_pred             CccEEEcCCCcEEEEecCCeEEEEe--CCceEEEEec----------CCCcccCeEEcCCCCEEEEeCCCcEEEEcC-CC
Q 017371           81 PEDASMDKNGVIYTATRDGWIKRLQ--DGTWVNWKFI----------DSQTLVGLTSTKEGHLIICDNANGLHKVSE-DG  147 (372)
Q Consensus        81 p~~i~~d~~G~l~v~~~~g~i~~~~--~g~~~~~~~~----------~~~p~~gl~~d~dG~l~v~~~~~gv~~~~~-~g  147 (372)
                      ..+|+.|++|.||+|+.++.|.+++  .+.++.+...          ..... +++.|++|+||++....||.+++. ++
T Consensus       315 v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~-~i~~d~~g~lWigt~~~Gl~~~~~~~~  393 (781)
T 3v9f_A          315 ARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVS-SVCDDGQGKLWIGTDGGGINVFENGKR  393 (781)
T ss_dssp             EEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEE-EEEECTTSCEEEEEBSSCEEEEETTEE
T ss_pred             EEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceE-EEEEcCCCCEEEEeCCCcEEEEECCCC
Confidence            4568999999999999777899998  4556555321          12345 889999999999987789999994 33


Q ss_pred             -cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCC-c--cCcce
Q 017371          148 -VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-F--YFANG  223 (372)
Q Consensus       148 -~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~-~--~~~~g  223 (372)
                       .+.+... .+.....+..|+.|++|+||++..                  .++|+++|+++++++.+... +  .....
T Consensus       394 ~~~~~~~~-~~~~~~~v~~i~~d~~g~lWigt~------------------~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~  454 (781)
T 3v9f_A          394 VAIYNKEN-RELLSNSVLCSLKDSEGNLWFGTY------------------LGNISYYNTRLKKFQIIELEKNELLDVRV  454 (781)
T ss_dssp             EEECC------CCCSBEEEEEECTTSCEEEEET------------------TEEEEEECSSSCEEEECCSTTTCCCCEEE
T ss_pred             eEEEccCC-CCCCCcceEEEEECCCCCEEEEec------------------cCCEEEEcCCCCcEEEeccCCCCCCeEEE
Confidence             3332111 122234567899999999999642                  36899999988887765432 1  22334


Q ss_pred             EEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeecc-C-CCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHH
Q 017371          224 VALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAE-N-LPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKH  301 (372)
Q Consensus       224 i~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~-~-~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~  301 (372)
                      ++.+++|+ +|++..  ..|++++..+.+......... . .......++.|++|+||+++..                 
T Consensus       455 i~~d~~g~-lwigt~--~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~-----------------  514 (781)
T 3v9f_A          455 FYEDKNKK-IWIGTH--AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFG-----------------  514 (781)
T ss_dssp             EEECTTSE-EEEEET--TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESS-----------------
T ss_pred             EEECCCCC-EEEEEC--CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcC-----------------
Confidence            55666664 888765  579999986543322111100 0 1134567889999999999974                 


Q ss_pred             HHHhcCccccccccCCCceEEEEECCCCcEEEEEECCCCCeeccceeeEEE-CCEEEEEeCCCCeE-EEEe
Q 017371          302 VLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFI-GKVQ  370 (372)
Q Consensus       302 ~~~~~p~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~L~igs~~~~~i-~~~~  370 (372)
                                        +++++++++++.+..+....+...+.+.++.++ +|+||+|+.  +.| .+++
T Consensus       515 ------------------~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~--~Glv~~~d  565 (781)
T 3v9f_A          515 ------------------GGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG--EGLVCFPS  565 (781)
T ss_dssp             ------------------SCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET--TEEEEESC
T ss_pred             ------------------CCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC--CCceEEEC
Confidence                              368999998877777776666555677888887 699999997  445 5554

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.70  E-value=6.9e-16  Score=159.08  Aligned_cols=225  Identities=12%  Similarity=0.088  Sum_probs=157.6

Q ss_pred             CccEEEcCCCcEEEEecCCeEEEEe-C-CceEEEEe----cCCCcccCeEEcCCCCEEEEeCCCcEEEEc-CCC-cEEEe
Q 017371           81 PEDASMDKNGVIYTATRDGWIKRLQ-D-GTWVNWKF----IDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENFL  152 (372)
Q Consensus        81 p~~i~~d~~G~l~v~~~~g~i~~~~-~-g~~~~~~~----~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~-~~g-~~~l~  152 (372)
                      ..+|+.|++|.||+|+.++.|++++ . +.++.+..    ...... +++.|++|+||++....|+++++ .++ ++.+.
T Consensus       365 v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~-~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~  443 (781)
T 3v9f_A          365 VSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVL-CSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIE  443 (781)
T ss_dssp             EEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEE-EEEECTTSCEEEEETTEEEEEECSSSCEEEECC
T ss_pred             eEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceE-EEEECCCCCEEEEeccCCEEEEcCCCCcEEEec
Confidence            5678899999999999777799999 3 33333211    123455 88899999999998767999999 456 55442


Q ss_pred             eecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCc------cCcceEEE
Q 017371          153 SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF------YFANGVAL  226 (372)
Q Consensus       153 ~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~------~~~~gi~~  226 (372)
                      ..  +.....+..|..|++|+||++.                   .++|+++|+++++++.+....      .....++.
T Consensus       444 ~~--~~~~~~v~~i~~d~~g~lwigt-------------------~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~  502 (781)
T 3v9f_A          444 LE--KNELLDVRVFYEDKNKKIWIGT-------------------HAGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQ  502 (781)
T ss_dssp             ST--TTCCCCEEEEEECTTSEEEEEE-------------------TTEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEE
T ss_pred             cC--CCCCCeEEEEEECCCCCEEEEE-------------------CCceEEEeCCCCeEEecccCcccccccceeEEEEE
Confidence            21  2223456789999999999973                   257999999887776654321      23456777


Q ss_pred             ecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCC----ceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHH
Q 017371          227 SRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAP----DNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHV  302 (372)
Q Consensus       227 ~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p----~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~  302 (372)
                      +++|+ +|++.. +..|++++.++.   ....+.. ..+.|    ..|..|++|+||+++..                  
T Consensus       503 d~~g~-lWigt~-~~Gl~~~~~~~~---~~~~~~~-~~~l~~~~i~~i~~d~~g~lWi~T~~------------------  558 (781)
T 3v9f_A          503 DSEGR-FWIGTF-GGGVGIYTPDMQ---LVRKFNQ-YEGFCSNTINQIYRSSKGQMWLATGE------------------  558 (781)
T ss_dssp             CTTCC-EEEEES-SSCEEEECTTCC---EEEEECT-TTTCSCSCEEEEEECTTSCEEEEETT------------------
T ss_pred             cCCCC-EEEEEc-CCCEEEEeCCCC---eEEEccC-CCCCCCCeeEEEEECCCCCEEEEECC------------------
Confidence            88886 888765 346999987543   2333321 22333    45888999999999975                  


Q ss_pred             HHhcCccccccccCCCceEE-EEECCCCcEEEEEECCCCCeeccceeeEEE-CCEEEEEeCCCCeEEEEeC
Q 017371          303 LAAYPKLFSQFITLGGGAHL-IHVAEDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL  371 (372)
Q Consensus       303 ~~~~p~~~~~~~~~~~~~~v-~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~L~igs~~~~~i~~~~~  371 (372)
                                        ++ .+++++...+..|...+|...+.+.++.++ +|+||+++.  +.|.+++.
T Consensus       559 ------------------Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~t~--~Gl~~~~~  609 (781)
T 3v9f_A          559 ------------------GLVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNGNIWASTN--TGISCYIT  609 (781)
T ss_dssp             ------------------EEEEESCTTTCCCEEECGGGTCSCCCCCEEEECSSSCEEEECS--SCEEEEET
T ss_pred             ------------------CceEEECCCCCcEEEccccCCCCCceEEEEEECCCCCEEEEcC--CceEEEEC
Confidence                              45 999987766677776667555567788887 699999994  45777764

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.69  E-value=5.2e-15  Score=151.33  Aligned_cols=182  Identities=13%  Similarity=0.079  Sum_probs=135.3

Q ss_pred             CCCCccEEEcC-CCcEEEEe-cCCeEEEEe-CC-----ceEEEEe-cCCCcccCeEEcCCC-CEEEEeCC-CcEEEEcCC
Q 017371           78 VNHPEDASMDK-NGVIYTAT-RDGWIKRLQ-DG-----TWVNWKF-IDSQTLVGLTSTKEG-HLIICDNA-NGLHKVSED  146 (372)
Q Consensus        78 ~~~p~~i~~d~-~G~l~v~~-~~g~i~~~~-~g-----~~~~~~~-~~~~p~~gl~~d~dG-~l~v~~~~-~gv~~~~~~  146 (372)
                      +..|.+|++|. ++.||+++ .+++|++++ +|     ..+.+.. ....|. ||++|..+ +||+++.. +.|.+++.+
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~-GLAvD~~~~~LY~tD~~~~~I~v~~ld  501 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD-GLAVDWIHSNIYWTDSVLGTVSVADTK  501 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC-EEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcc-eeeeeecCCcEEEEecCCCeEEEEeCC
Confidence            67899999996 78999999 678999998 54     2333333 567899 99999655 89999987 457777766


Q ss_pred             C--cEEEeeecCCcccccccceEEccC-CcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEe-CCccCcc
Q 017371          147 G--VENFLSYVNGSKLRFANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFAN  222 (372)
Q Consensus       147 g--~~~l~~~~~~~~~~~~~~l~~d~d-G~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~-~~~~~~~  222 (372)
                      |  .+++...    .+..|++|++|+. |+||++|.+                ..++|.+++.++...+.+. .++..|+
T Consensus       502 G~~~~~l~~~----~l~~P~gIaVDp~~g~LYwtD~g----------------~~~~I~~~~~dG~~~~~lv~~~l~~P~  561 (791)
T 3m0c_C          502 GVKRKTLFRE----NGSKPRAIVVDPVHGFMYWTDWG----------------TPAKIKKGGLNGVDIYSLVTENIQWPN  561 (791)
T ss_dssp             SSSEEEEEEC----TTCCEEEEEEETTTTEEEEEECS----------------SSCEEEEEETTSCCEEEEECSSCSCEE
T ss_pred             CCeEEEEEeC----CCCCcceEEEecCCCCEEEecCC----------------CCCeEEEEecCCCceEEEEeCCCCCce
Confidence            6  4444331    2356899999985 899999863                2378999999865555544 5678999


Q ss_pred             eEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccC--CCCCCceeEEcCCCCEEEEEec
Q 017371          223 GVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAEN--LPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       223 gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~--~~g~p~~i~~d~~G~lwva~~~  284 (372)
                      ||+++++++.|||++...++|++++++|....   .+...  .-..|.+|+++. ++||++++.
T Consensus       562 GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~---~v~~~~~~l~~P~glav~~-~~lYwtD~~  621 (791)
T 3m0c_C          562 GITLDLLSGRLYWVDSKLHSISSIDVNGGNRK---TILEDEKRLAHPFSLAVFE-DKVFWTDII  621 (791)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCSCE---EEEECTTTTSSEEEEEEET-TEEEEEETT
T ss_pred             EEEEecCCCeEEEEeCCCCcEEEEecCCCceE---EEecCCCccCCCCEEEEeC-CEEEEEECC
Confidence            99999988899999999999999999885322   22222  122477888864 489999987

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.69  E-value=5.9e-15  Score=147.66  Aligned_cols=182  Identities=16%  Similarity=0.135  Sum_probs=139.3

Q ss_pred             CCCCccEEEcC-CCcEEEEe-cCCeEEEEe-CC-ceEEEEe-cCCCcccCeEEcC-CCCEEEEeCCC-cEEEEcCCC--c
Q 017371           78 VNHPEDASMDK-NGVIYTAT-RDGWIKRLQ-DG-TWVNWKF-IDSQTLVGLTSTK-EGHLIICDNAN-GLHKVSEDG--V  148 (372)
Q Consensus        78 ~~~p~~i~~d~-~G~l~v~~-~~g~i~~~~-~g-~~~~~~~-~~~~p~~gl~~d~-dG~l~v~~~~~-gv~~~~~~g--~  148 (372)
                      +..|..|++|+ +|.||+++ ..++|++++ +| ..+.+.. ..+.|. ||++|. .++||+++... .|.+++.+|  .
T Consensus       348 l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~-GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~  426 (619)
T 3s94_A          348 IRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPD-GIAVDWVARNLYWTDTGTDRIEVTRLNGTMR  426 (619)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCC-EEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             cCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcC-ceEEecccCcEEEEeCCCCcEEEEeCCCCeE
Confidence            66788999996 78999999 688999999 65 3444443 346899 999995 67899999874 466666666  4


Q ss_pred             EEEeeecCCcccccccceEEccC-CcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEe-CCccCcceEEE
Q 017371          149 ENFLSYVNGSKLRFANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVAL  226 (372)
Q Consensus       149 ~~l~~~~~~~~~~~~~~l~~d~d-G~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~-~~~~~~~gi~~  226 (372)
                      +.+..    ..+..|++|++|+. |.||++|.+                ..++|++.+.+....+.+. ..+..|+|+++
T Consensus       427 ~~l~~----~~l~~P~~iavdp~~G~ly~tD~g----------------~~~~I~r~~~dG~~~~~l~~~~l~~P~Glal  486 (619)
T 3s94_A          427 KILIS----EDLEEPRAIVLDPMVGYMYWTDWG----------------EIPKIERAALDGSDRVVLVNTSLGWPNGLAL  486 (619)
T ss_dssp             EEEEC----TTCCSEEEEEEETTTTEEEEEECS----------------SSCEEEEEETTSCSCEEEECSSCSCEEEEEE
T ss_pred             EEEEE----CCCCCeeeEEEEcCCCcEEEecCC----------------CCCEEEEEccCCCccEEEEeCCCCCCeeeEE
Confidence            55542    23568999999985 999999864                3478999998754444444 46899999999


Q ss_pred             ecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 017371          227 SRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       227 ~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~  284 (372)
                      +++++.|||+++..++|++++++|...   +.+.......|.+|+++.+ +||++++.
T Consensus       487 D~~~~~LY~aD~~~~~I~~~~~dG~~~---~~~~~~~l~~P~glav~~~-~ly~tD~~  540 (619)
T 3s94_A          487 DYDEGKIYWGDAKTDKIEVMNTDGTGR---RVLVEDKIPHIFGFTLLGD-YVYWTDWQ  540 (619)
T ss_dssp             ETTTTEEEEEETTTTEEEEEESSSCCC---EEEEECCCCSSCCEEEETT-EEEEECTT
T ss_pred             cccCCEEEEEECCCCEEEEEecCCCce---EEEeccCCCCcEEEEEECC-EEEEeecC
Confidence            998889999999999999999988532   2222233346999999866 89999987

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.69  E-value=2e-14  Score=133.21  Aligned_cols=239  Identities=12%  Similarity=0.137  Sum_probs=155.3

Q ss_pred             CCCCccEEEcCCCcEEEEec---CCeEEEEe--CCceEEEE---ecCCCcccCeEEcCCCC-EEEEeCC-CcEEEEc--C
Q 017371           78 VNHPEDASMDKNGVIYTATR---DGWIKRLQ--DGTWVNWK---FIDSQTLVGLTSTKEGH-LIICDNA-NGLHKVS--E  145 (372)
Q Consensus        78 ~~~p~~i~~d~~G~l~v~~~---~g~i~~~~--~g~~~~~~---~~~~~p~~gl~~d~dG~-l~v~~~~-~gv~~~~--~  145 (372)
                      ...|..++++++|+||+++.   ++.|+.|+  +++.+.+.   .....|. ++++++||+ ||+++.. ..+..++  .
T Consensus        39 ~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~-~~a~spdg~~l~~~~~~~~~v~v~~~~~  117 (347)
T 3hfq_A           39 TQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPA-YVAVDEARQLVYSANYHKGTAEVMKIAA  117 (347)
T ss_dssp             CSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCS-EEEEETTTTEEEEEETTTTEEEEEEECT
T ss_pred             cCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCE-EEEECCCCCEEEEEeCCCCEEEEEEeCC
Confidence            36899999999999998874   57899988  66654433   3466788 999999997 7787744 3466666  4


Q ss_pred             CC-cEEEeee-cCCc------ccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCC-CCeEEEEe-
Q 017371          146 DG-VENFLSY-VNGS------KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS-SNITTLVA-  215 (372)
Q Consensus       146 ~g-~~~l~~~-~~~~------~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~-t~~~~~~~-  215 (372)
                      +| .+.+... ..+.      ....+..+++++||++|+++.                 ..+.|+.|+.+ +++..... 
T Consensus       118 ~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~-----------------~~~~v~~~~~~~~g~~~~~~~  180 (347)
T 3hfq_A          118 DGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDL-----------------GSDKVYVYNVSDAGQLSEQSV  180 (347)
T ss_dssp             TSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEET-----------------TTTEEEEEEECTTSCEEEEEE
T ss_pred             CCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeC-----------------CCCEEEEEEECCCCcEEEeee
Confidence            55 4443321 1111      112466799999999998865                 34567777765 46554322 


Q ss_pred             ---CCccCcceEEEecCCCEEEEEeCCCCeEEEEEccC--CCCcceeeeccCCC------CCCceeEEcCCCC-EEEEEe
Q 017371          216 ---DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKG--ERKGKLETFAENLP------GAPDNINLAPDGT-FWIAII  283 (372)
Q Consensus       216 ---~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g--~~~~~~~~~~~~~~------g~p~~i~~d~~G~-lwva~~  283 (372)
                         .....|++++++|||+++|+++...+.|..|+++.  .+......+. ..+      ..|.++++++||+ +|++..
T Consensus       181 ~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~i~~spdG~~l~v~~~  259 (347)
T 3hfq_A          181 LTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVK-TIPADYTAHNGAAAIRLSHDGHFLYVSNR  259 (347)
T ss_dssp             EECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEE-SSCTTCCSCCEEEEEEECTTSCEEEEEEE
T ss_pred             EEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeee-ecCCCCCCCCcceeEEECCCCCEEEEEeC
Confidence               22336778999999999999998888888888764  2211111221 111      2367799999997 778876


Q ss_pred             cCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEECCCCcE--EEEEECCCCCeeccceeeEEE-C-CEEEEE
Q 017371          284 KLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTI--IRNLVDPTGQLMSFVTSGLQV-D-NHLYVI  359 (372)
Q Consensus       284 ~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~g~~--~~~~~~~~g~~~~~~t~~~~~-~-g~L~ig  359 (372)
                      ..                                ..-.++.++.+|+.  +..+... +.   .+..+... + ..||++
T Consensus       260 ~~--------------------------------~~v~v~~~~~~g~~~~~~~~~~~-~~---~~~~~~~spdg~~l~v~  303 (347)
T 3hfq_A          260 GY--------------------------------NTLAVFAVTADGHLTLIQQISTE-GD---FPRDFDLDPTEAFVVVV  303 (347)
T ss_dssp             TT--------------------------------TEEEEEEECGGGCEEEEEEEECS-SS---CCCEEEECTTSSEEEEE
T ss_pred             CC--------------------------------CEEEEEEECCCCcEEEeEEEecC-CC---CcCeEEECCCCCEEEEE
Confidence            41                                01234444445543  3333322 21   35566665 3 579999


Q ss_pred             eCCCCeEEEEeC
Q 017371          360 SLTSNFIGKVQL  371 (372)
Q Consensus       360 s~~~~~i~~~~~  371 (372)
                      +...+.|.++++
T Consensus       304 ~~~~~~v~v~~~  315 (347)
T 3hfq_A          304 NQNTDNATLYAR  315 (347)
T ss_dssp             ETTTTEEEEEEE
T ss_pred             EcCCCcEEEEEE
Confidence            998899988854

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=99.68  E-value=2.6e-15  Score=140.30  Aligned_cols=261  Identities=12%  Similarity=0.111  Sum_probs=164.6

Q ss_pred             CceEecCCCCCCCccEEEcCCCc-EEEEecCCeEEEEe-CCceEE-EE-------ecCCCcccCeEEcC----CCCEEEE
Q 017371           69 DFIKVGEGSVNHPEDASMDKNGV-IYTATRDGWIKRLQ-DGTWVN-WK-------FIDSQTLVGLTSTK----EGHLIIC  134 (372)
Q Consensus        69 ~~~~~~~g~~~~p~~i~~d~~G~-l~v~~~~g~i~~~~-~g~~~~-~~-------~~~~~p~~gl~~d~----dG~l~v~  134 (372)
                      .++++..+ +..|.+|+++++|+ ||+++..|+|++++ +|.... +.       ...+.++ +|+++|    +|.|||+
T Consensus         9 ~~~~va~~-l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~-gia~~pdf~~~g~lYv~   86 (353)
T 2g8s_A            9 NVEVLQDK-LDHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLL-DVVLAPDFAQSRRIWLS   86 (353)
T ss_dssp             EEEEEEEE-ESSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEE-EEEECTTHHHHCEEEEE
T ss_pred             EEEEEECC-CCCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCce-eEEECCCCCCCCEEEEE
Confidence            35556555 78999999999999 99999889999999 665431 11       1234567 999998    5899999


Q ss_pred             eCC--------CcEEEEc-C-C-C----cEEEeeecCC--cccccccceEEccCCcEEEEeCCCCCCCcccccccccccC
Q 017371          135 DNA--------NGLHKVS-E-D-G----VENFLSYVNG--SKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKP  197 (372)
Q Consensus       135 ~~~--------~gv~~~~-~-~-g----~~~l~~~~~~--~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~  197 (372)
                      ...        ..|.+++ . + +    .+.+....+.  ...+.+++|++++||+||++......  .+...  .....
T Consensus        87 ~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~--~~~~q--~~~~~  162 (353)
T 2g8s_A           87 YSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQ--RPTAQ--DLDKL  162 (353)
T ss_dssp             EEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTC--GGGGG--CTTSC
T ss_pred             EeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCC--CCccC--CCCCC
Confidence            643        2577776 2 2 2    2333333332  23467889999999999999643110  00000  11234


Q ss_pred             CCeEEEEeCCCC-------------eEEEEeCCccCcceEEEecCCCEEEEEeCCCC---eEEEEEccCCCCcc------
Q 017371          198 HGQLLKYDPSSN-------------ITTLVADGFYFANGVALSRDEDYVVVCESWKF---RCRKYWLKGERKGK------  255 (372)
Q Consensus       198 ~g~v~~~d~~t~-------------~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~---~i~~~~~~g~~~~~------  255 (372)
                      .|+|+|+|+++.             ..+++..++..|.|++++++...||+++.+.+   +|.++.. |...+-      
T Consensus       163 ~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~-G~nyGwp~~~~~  241 (353)
T 2g8s_A          163 QGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQK-GKNYGWPLATWG  241 (353)
T ss_dssp             TTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCT-TCBCCTTTBCSS
T ss_pred             CeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEecc-CCcCCCCCccCC
Confidence            689999999843             45677788999999999996557999998643   4554432 111100      


Q ss_pred             ---------------eeeecc-----CCCCCCceeEEcC-------CCCEEEEEecCchhHHHHhhcchhHHHHHHhcCc
Q 017371          256 ---------------LETFAE-----NLPGAPDNINLAP-------DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPK  308 (372)
Q Consensus       256 ---------------~~~~~~-----~~~g~p~~i~~d~-------~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~  308 (372)
                                     ...+..     .....|.++++..       +|++||++..                        
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~------------------------  297 (353)
T 2g8s_A          242 INYSGFKIPEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALK------------------------  297 (353)
T ss_dssp             BCTTSSCCTTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETT------------------------
T ss_pred             CCCCCCccCcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEcc------------------------
Confidence                           000000     0011377888754       5889999876                        


Q ss_pred             cccccccCCCceEEEEECCC-CcEEEEEECCCCCeeccceeeEEE-CCEEEEEeC-CCCeEEEEeC
Q 017371          309 LFSQFITLGGGAHLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISL-TSNFIGKVQL  371 (372)
Q Consensus       309 ~~~~~~~~~~~~~v~~~~~~-g~~~~~~~~~~g~~~~~~t~~~~~-~g~L~igs~-~~~~i~~~~~  371 (372)
                                .+.|.+++.+ ++......--.+ ....+..+.+. +|.||+.+. ....|.|+..
T Consensus       298 ----------~~~v~~~~~~~~~~~~~~~~~~~-~~~rp~~v~~~pdG~lyv~td~~~g~I~ri~~  352 (353)
T 2g8s_A          298 ----------DKDVIVMSVNGDKVTEDGRILTD-RGQRIRDVRTGPDGYLYVLTDESSGELLKVSP  352 (353)
T ss_dssp             ----------TTEEEEEEEETTEEEEEEEESGG-GCCCEEEEEECTTSCEEEEECSTTEEEEEEEC
T ss_pred             ----------CCEEEEEEeCCCeEeeeEEcccC-CCCceeEEEECCCCcEEEEEeCCCCEEEEEeC
Confidence                      4567777644 343322111111 12246778876 689999865 5678888753

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.67  E-value=6.3e-16  Score=156.97  Aligned_cols=227  Identities=9%  Similarity=0.095  Sum_probs=161.9

Q ss_pred             EEEcCCCcEEEEecCCeEEEEe-C-CceEEEEecCCCcccCeEEcC-CCCEEEEeCC-CcEEEEcCCC------cEEEee
Q 017371           84 ASMDKNGVIYTATRDGWIKRLQ-D-GTWVNWKFIDSQTLVGLTSTK-EGHLIICDNA-NGLHKVSEDG------VENFLS  153 (372)
Q Consensus        84 i~~d~~G~l~v~~~~g~i~~~~-~-g~~~~~~~~~~~p~~gl~~d~-dG~l~v~~~~-~gv~~~~~~g------~~~l~~  153 (372)
                      .++++...|++++. +.|.+++ + ++...+......|. +|++++ ++.||+++.. ..|++++.++      ...+  
T Consensus       372 ~~~~~~~~ll~~~~-~~I~~id~~~~~~~~~~~~~~~p~-gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~--  447 (699)
T 1n7d_A          372 KAVGSIAYLFFTNR-HEVRKMTLDRSEYTSLIPNLRNVV-ALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV--  447 (699)
T ss_dssp             BCCSSCCCBCCCCT-TC-CEECTTSCCEECCSCCCTTCC-CCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCB--
T ss_pred             cccccceeEEecCc-cceEEEeCCCCcceeeeccCcceE-EEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEE--
Confidence            33445556777754 4688888 3 44555555567889 999996 5689999866 4688888332      1111  


Q ss_pred             ecCCcccccccceEEc-cCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEe-CCccCcceEEEecCCC
Q 017371          154 YVNGSKLRFANDVVEA-SDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDED  231 (372)
Q Consensus       154 ~~~~~~~~~~~~l~~d-~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~-~~~~~~~gi~~~~dg~  231 (372)
                        ....+..|.+|++| ..|+||++|.                 ..++|++++++++..+.+. .++..|++++++++++
T Consensus       448 --i~~~~~~P~glavD~~~g~LY~tD~-----------------~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g  508 (699)
T 1n7d_A          448 --ISRDIQAPDGLAVDWIHSNIYWTDS-----------------VLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHG  508 (699)
T ss_dssp             --CCSCC--CCCEECCCSSSBCEECCT-----------------TTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSS
T ss_pred             --EeCCCCCcceEEEEeeCCcEEEEec-----------------cCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCC
Confidence              11224568899999 5679999876                 4578999999866655554 4578899999999888


Q ss_pred             EEEEEeCCC-CeEEEEEccCCCCcceeeeccCCCCCCceeEEcCC-CCEEEEEecCchhHHHHhhcchhHHHHHHhcCcc
Q 017371          232 YVVVCESWK-FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPD-GTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKL  309 (372)
Q Consensus       232 ~l~v~~~~~-~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~-G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~  309 (372)
                      +|||++.+. .+|++++++|...   ..+.......|.+|++|++ ++||+++..                         
T Consensus       509 ~ly~td~~~~~~I~~~~~dG~~~---~~l~~~~l~~PnGlavd~~~~~LY~aD~~-------------------------  560 (699)
T 1n7d_A          509 FMYWTDWGTPAKIKKGGLNGVDI---YSLVTENIQWPNGITLDLLSGRLYWVDSK-------------------------  560 (699)
T ss_dssp             CCEECCCSSSCCEEBCCSSSCCC---CEESCSSCSSCCCEEECTTTCCEEEEETT-------------------------
T ss_pred             cEEEcccCCCCeEEEEeCCCCCe---eEEEeCCCCCccEEEEeccCCEEEEEecC-------------------------
Confidence            899999875 7899999887432   2232222356999999975 689999976                         


Q ss_pred             ccccccCCCceEEEEECCCCcEEEEEECCCCCeeccceeeEEECCEEEEEeCCCCeEEEEeC
Q 017371          310 FSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL  371 (372)
Q Consensus       310 ~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~igs~~~~~i~~~~~  371 (372)
                               .+.|.+++.+|...+.+....+. +..+.++..++++||+....++.|.+++.
T Consensus       561 ---------~~~I~~~d~dG~~~~~~~~~~~~-~~~P~glavd~~~lywtd~~~~~V~~~d~  612 (699)
T 1n7d_A          561 ---------LHSISSIDVNGGNRKTILEDEKR-LAHPFSLAVFEDKVFWTDIINEAIFSANR  612 (699)
T ss_dssp             ---------TTEEEEECSSSSCCEEECCCSSS-CSSCCCCEEETTEEEEECSTTTCEEEEET
T ss_pred             ---------CCeEEEEccCCCceEEEEecCCc-CCCceEeEEECCEEEEEeCCCCeEEEEEc
Confidence                     46899999888665555432222 45677788888899999999999999874

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.66  E-value=1.1e-14  Score=150.44  Aligned_cols=223  Identities=14%  Similarity=0.175  Sum_probs=155.0

Q ss_pred             CccEEEcCCCc-EEEEecCCeEEEEe--CCceEEEEe-----cCCCcccCeEEcCCCCEEEEeCCCcEEEEc-CCC-cEE
Q 017371           81 PEDASMDKNGV-IYTATRDGWIKRLQ--DGTWVNWKF-----IDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VEN  150 (372)
Q Consensus        81 p~~i~~d~~G~-l~v~~~~g~i~~~~--~g~~~~~~~-----~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~-~~g-~~~  150 (372)
                      ..+++.|++|. ||+|+.++.|++++  +++++.+..     ...... .+..|++|+||++.. .|+++++ .++ .+.
T Consensus       408 v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~-~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~  485 (795)
T 4a2l_A          408 IKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVY-AILPDGEGNLWLGTL-SALVRFNPEQRSFTT  485 (795)
T ss_dssp             EEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEE-EEEECSSSCEEEEES-SCEEEEETTTTEEEE
T ss_pred             EEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeE-EEEECCCCCEEEEec-CceeEEeCCCCeEEE
Confidence            45788899999 99999877899999  566766643     123456 889999999999986 7999999 555 554


Q ss_pred             Eeeec--CCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeC-----Ccc--Cc
Q 017371          151 FLSYV--NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-----GFY--FA  221 (372)
Q Consensus       151 l~~~~--~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~-----~~~--~~  221 (372)
                      +....  .+.....+..+.+|++|+||++.                  . ++|+++|++++++ .+..     ++.  ..
T Consensus       486 ~~~~~~~~~~~~~~i~~i~~d~~g~lWigt------------------~-~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i  545 (795)
T 4a2l_A          486 IEKEKDGTPVVSKQITTLFRDSHKRLWIGG------------------E-EGLSVFKQEGLDI-QKASILPVSNVTKLFT  545 (795)
T ss_dssp             CCBCTTCCBCCCCCEEEEEECTTCCEEEEE------------------S-SCEEEEEEETTEE-EECCCSCSCGGGGSCE
T ss_pred             ccccccccccCCceEEEEEECCCCCEEEEe------------------C-CceEEEeCCCCeE-EEecCCCCCCCCCCee
Confidence            43210  11122456789999999999973                  2 5699999887776 3321     121  22


Q ss_pred             ceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCc----eeEEcCCCCEEEEEecCchhHHHHhhcch
Q 017371          222 NGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPD----NINLAPDGTFWIAIIKLDARRMKILNSSK  297 (372)
Q Consensus       222 ~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~----~i~~d~~G~lwva~~~~~~~~~~~~~~~~  297 (372)
                      ..+..+++|+ +|++...  +|++|+.++.   ....+. ...|+|+    ++..|++|+||+++..             
T Consensus       546 ~~i~~d~~g~-lWigT~~--Gl~~~d~~~~---~~~~~~-~~~gl~~~~i~~i~~d~~g~lWi~t~~-------------  605 (795)
T 4a2l_A          546 NCIYEASNGI-IWVGTRE--GFYCFNEKDK---QIKRYN-TTNGLPNNVVYGILEDSFGRLWLSTNR-------------  605 (795)
T ss_dssp             EEEEECTTSC-EEEEESS--CEEEEETTTT---EEEEEC-GGGTCSCSCEEEEEECTTSCEEEEETT-------------
T ss_pred             EEEEECCCCC-EEEEeCC--CceeECCCCC---cEEEeC-CCCCCchhheEEEEECCCCCEEEEcCC-------------
Confidence            3566677776 8887653  7999997543   233332 2223444    4888999999999965             


Q ss_pred             hHHHHHHhcCccccccccCCCceEEEEECCCCcEEEEEECCCCCeeccc--eeeEEE-CCEEEEEeCCCCeEEEEe
Q 017371          298 LIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFV--TSGLQV-DNHLYVISLTSNFIGKVQ  370 (372)
Q Consensus       298 ~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~--t~~~~~-~g~L~igs~~~~~i~~~~  370 (372)
                                             ++.+++++...+..|...+|...+.+  .++..+ +|+||+|+..  .|.+++
T Consensus       606 -----------------------Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~g~~~--Gl~~~~  656 (795)
T 4a2l_A          606 -----------------------GISCFNPETEKFRNFTESDGLQSNQFNTASYCRTSVGQMYFGGIN--GITTFR  656 (795)
T ss_dssp             -----------------------EEEEEETTTTEEEEECGGGTCSCSCEEEEEEEECTTSCEEEEETT--EEEEEC
T ss_pred             -----------------------ceEEEcCCCCcEEEcCCcCCCccccCccCceeECCCCeEEEecCC--ceEEEc
Confidence                                   79999998888888877777543433  344444 6999999965  455554

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.66  E-value=3.5e-14  Score=142.25  Aligned_cols=218  Identities=11%  Similarity=0.113  Sum_probs=161.2

Q ss_pred             CCcEEEEecCCeEEEEe-CC-ceEEEEe--cCCCcccCeEEcC-CCCEEEEeCC-CcEEEEcCCC--cEEEeeecCCccc
Q 017371           89 NGVIYTATRDGWIKRLQ-DG-TWVNWKF--IDSQTLVGLTSTK-EGHLIICDNA-NGLHKVSEDG--VENFLSYVNGSKL  160 (372)
Q Consensus        89 ~G~l~v~~~~g~i~~~~-~g-~~~~~~~--~~~~p~~gl~~d~-dG~l~v~~~~-~gv~~~~~~g--~~~l~~~~~~~~~  160 (372)
                      +..|.++. .+.|.+++ ++ .......  ....|. +|++|+ +|+||++|.. ..|.+++.+|  .+.+...    .+
T Consensus         6 ~~~Ll~s~-~~~I~~i~l~~~~~~~~~~~~~~~~~~-~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~----g~   79 (628)
T 4a0p_A            6 EAFLLFSR-RADIRRISLETNNNNVAIPLTGVKEAS-ALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEF----GL   79 (628)
T ss_dssp             CCEEEEEE-TTEEEEEESSCTTCEEECCCCSCSCEE-EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS----SC
T ss_pred             CcEEEEEe-CCcEEEEECCCCCcceEEEcCCCCceE-EEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeC----CC
Confidence            44566664 56799998 44 3333222  234788 999996 6789999876 4588888555  5544321    23


Q ss_pred             ccccceEEcc-CCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEe-CCccCcceEEEecCCCEEEEEeC
Q 017371          161 RFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDEDYVVVCES  238 (372)
Q Consensus       161 ~~~~~l~~d~-dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~-~~~~~~~gi~~~~dg~~l~v~~~  238 (372)
                      ..|.+||+|. .|+||++|.                 ..++|.+++++++..+.+. ..+..|++++++|.++.|||++.
T Consensus        80 ~~P~GlAvD~~~~~LY~tD~-----------------~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~  142 (628)
T 4a0p_A           80 DYPEGMAVDWLGKNLYWADT-----------------GTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEW  142 (628)
T ss_dssp             SCCCEEEEETTTTEEEEEET-----------------TTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEEC
T ss_pred             CCcceEEEEeCCCEEEEEEC-----------------CCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCC
Confidence            5789999995 578999987                 4678999998865555554 77889999999998778999997


Q ss_pred             C-CCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCC-CCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccC
Q 017371          239 W-KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPD-GTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITL  316 (372)
Q Consensus       239 ~-~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~-G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~  316 (372)
                      + ..+|++++++|..   .+.+.+. ...|.+|++|.+ ++||+++..                                
T Consensus       143 g~~~~I~r~~~dG~~---~~~l~~~-~~~P~GlalD~~~~~LY~aD~~--------------------------------  186 (628)
T 4a0p_A          143 GGKPKIDRAAMDGSE---RTTLVPN-VGRANGLTIDYAKRRLYWTDLD--------------------------------  186 (628)
T ss_dssp             SSSCEEEEEETTSCS---CEEEECS-CSSEEEEEEETTTTEEEEEETT--------------------------------
T ss_pred             CCCCEEEEEeCCCCc---eEEEECC-CCCcceEEEccccCEEEEEECC--------------------------------
Confidence            6 6899999998853   2233333 246999999985 689999987                                


Q ss_pred             CCceEEEEECCCCcEEEEEECCCCCeeccceeeEEECCEEEEEeCCCCeEEEEeC
Q 017371          317 GGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL  371 (372)
Q Consensus       317 ~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~igs~~~~~i~~~~~  371 (372)
                        .+.|.+++.+|...+.+...    +..+.++..++++||+++..++.|.+++.
T Consensus       187 --~~~I~~~d~dG~~~~v~~~~----l~~P~glav~~~~ly~tD~~~~~I~~~dk  235 (628)
T 4a0p_A          187 --TNLIESSNMLGLNREVIADD----LPHPFGLTQYQDYIYWTDWSRRSIERANK  235 (628)
T ss_dssp             --TTEEEEEETTSCSCEEEEEC----CSCEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred             --CCEEEEEcCCCCceEEeecc----CCCceEEEEECCEEEEecCCCCEEEEEEC
Confidence              56899999887554444331    34567888888999999999999999873

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.66  E-value=6.5e-15  Score=141.35  Aligned_cols=182  Identities=13%  Similarity=0.135  Sum_probs=127.9

Q ss_pred             CCCCCccEEEcCCCcEEEEecC-----CeEEEEe-CCceE--EEEecCCCcccCeEEcC-CCCEEEEeCCC-cEEEEcC-
Q 017371           77 SVNHPEDASMDKNGVIYTATRD-----GWIKRLQ-DGTWV--NWKFIDSQTLVGLTSTK-EGHLIICDNAN-GLHKVSE-  145 (372)
Q Consensus        77 ~~~~p~~i~~d~~G~l~v~~~~-----g~i~~~~-~g~~~--~~~~~~~~p~~gl~~d~-dG~l~v~~~~~-gv~~~~~-  145 (372)
                      .+..|.+|++|++|.||+++..     ..++.++ ++.+.  ........|. ++++++ +|+|||++... .|++++. 
T Consensus       180 ~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~P~-giavd~~~G~lyv~d~~~~~V~~~d~~  258 (433)
T 4hw6_A          180 NIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLCNARGAK-TCAVHPQNGKIYYTRYHHAMISSYDPA  258 (433)
T ss_dssp             CCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEEECSSBC-CCEECTTTCCEEECBTTCSEEEEECTT
T ss_pred             CCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeeccccccccCCCC-EEEEeCCCCeEEEEECCCCEEEEEECC
Confidence            4678999999999999999853     2466666 33321  2223467899 999999 89999998764 5999995 


Q ss_pred             CC-c-EEEeeecCCcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCC--CCeE---EEEeC-
Q 017371          146 DG-V-ENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS--SNIT---TLVAD-  216 (372)
Q Consensus       146 ~g-~-~~l~~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~--t~~~---~~~~~-  216 (372)
                      +| . +.+... ..  ...+.+|+++++|+ ||++|.                 ..++|++++.+  ++.+   ..++. 
T Consensus       259 ~g~~~~~~~~~-~~--~~~~~~ia~dpdG~~LYvad~-----------------~~~~I~~~~~d~~~~~~~~~~~~ag~  318 (433)
T 4hw6_A          259 TGTLTEEEVMM-DT--KGSNFHIVWHPTGDWAYIIYN-----------------GKHCIYRVDYNRETGKLAVPYIVCGQ  318 (433)
T ss_dssp             TCCEEEEEEEC-SC--CSSCEEEEECTTSSEEEEEET-----------------TTTEEEEEEBCTTTCCBCCCEEEEEC
T ss_pred             CCeEEEEEecc-CC--CCCcccEEEeCCCCEEEEEeC-----------------CCCEEEEEeCCCCCcccCcEEEEEec
Confidence            47 5 444322 11  12345799999997 999986                 46789997754  3322   22221 


Q ss_pred             --------------CccCcceEEE---------ecCCCEEEEEeCCCCeEEEEEccCCCCcceeeec-----------cC
Q 017371          217 --------------GFYFANGVAL---------SRDEDYVVVCESWKFRCRKYWLKGERKGKLETFA-----------EN  262 (372)
Q Consensus       217 --------------~~~~~~gi~~---------~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~-----------~~  262 (372)
                                    .+..|.++++         +.+| .|||+++.+++|.+++.+|.    ...+.           +.
T Consensus       319 ~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g-~lyvaD~~n~~I~~~~~~G~----v~t~~G~g~~~~~G~~dG  393 (433)
T 4hw6_A          319 HSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEY-DFYFCDRDSHTVRVLTPEGR----VTTYAGRGNSREWGYVDG  393 (433)
T ss_dssp             TTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCE-EEEEEETTTTEEEEECTTSE----EEEEECCCTTCSSCCBCE
T ss_pred             CCCCccCCCcccceEEcCCccEEEEccccccccCCCC-cEEEEECCCCEEEEECCCCC----EEEEEeCCCCCccccCCC
Confidence                          2567899999         6666 59999999999999987652    11111           10


Q ss_pred             ------CCCCCceeEEc-CCCCEEEEEec
Q 017371          263 ------LPGAPDNINLA-PDGTFWIAIIK  284 (372)
Q Consensus       263 ------~~g~p~~i~~d-~~G~lwva~~~  284 (372)
                            ....|.+|++| ++|+|||++..
T Consensus       394 ~~~~~~~~~~P~giavd~~~g~lyVaD~~  422 (433)
T 4hw6_A          394 ELRSQALFNHPTSIAYDMKRKCFYIGDCD  422 (433)
T ss_dssp             ETTTTCBCSSEEEEEEETTTTEEEEEEGG
T ss_pred             ccccccEeCCCcEEEEECCCCEEEEEeCC
Confidence                  11258999999 89999999987

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.66  E-value=3.1e-14  Score=129.10  Aligned_cols=176  Identities=13%  Similarity=0.178  Sum_probs=127.6

Q ss_pred             CCCCccEEEcCCCcEEEEec-CCeEEEEe--CCceEEEEe-----cCCCcccCeEEcCCCCEEEEeC-------------
Q 017371           78 VNHPEDASMDKNGVIYTATR-DGWIKRLQ--DGTWVNWKF-----IDSQTLVGLTSTKEGHLIICDN-------------  136 (372)
Q Consensus        78 ~~~p~~i~~d~~G~l~v~~~-~g~i~~~~--~g~~~~~~~-----~~~~p~~gl~~d~dG~l~v~~~-------------  136 (372)
                      ...|.+++++++|.+|+++. +++|.+++  +|+.+.+..     ....|. +++++++|++|+++.             
T Consensus        68 ~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~-~i~~d~~G~l~vtd~~~g~~~~~~~~~~  146 (296)
T 3e5z_A           68 SHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPN-DVCLAPDGSLWFSDPTYGIDKPEEGYGG  146 (296)
T ss_dssp             CSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCC-CEEECTTSCEEEEECSHHHHCGGGSSCC
T ss_pred             CCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCC-CEEECCCCCEEEECCccccccccccccc
Confidence            34689999999999999984 58899999  677665532     234577 899999999999853             


Q ss_pred             -----CCcEEEEcCCC-cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCC-CC
Q 017371          137 -----ANGLHKVSEDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS-SN  209 (372)
Q Consensus       137 -----~~gv~~~~~~g-~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~-t~  209 (372)
                           ..+|++++.+| .+.+...     ...+++++++++|++++++.                 ..++|+++|.+ ++
T Consensus       147 ~~~~~~~~l~~~~~~g~~~~~~~~-----~~~~~gi~~s~dg~~lv~~~-----------------~~~~i~~~~~~~~g  204 (296)
T 3e5z_A          147 EMELPGRWVFRLAPDGTLSAPIRD-----RVKPNGLAFLPSGNLLVSDT-----------------GDNATHRYCLNARG  204 (296)
T ss_dssp             CCCSSSCEEEEECTTSCEEEEECC-----CSSEEEEEECTTSCEEEEET-----------------TTTEEEEEEECSSS
T ss_pred             cccCCCcEEEEECCCCCEEEeecC-----CCCCccEEECCCCCEEEEeC-----------------CCCeEEEEEECCCC
Confidence                 23799999557 5544322     34678999999998778765                 45789998875 45


Q ss_pred             eE---E-EEeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEE-cCCC-CEEEEEe
Q 017371          210 IT---T-LVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINL-APDG-TFWIAII  283 (372)
Q Consensus       210 ~~---~-~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~-d~~G-~lwva~~  283 (372)
                      +.   . .+......|.+++++++|+ +|++.  .++|.+|+.+|..   ...+. ...+ |.++++ .++| +||+++.
T Consensus       205 ~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~--~~~v~~~~~~g~~---~~~~~-~~~~-~~~~~f~~~d~~~L~v~t~  276 (296)
T 3e5z_A          205 ETEYQGVHFTVEPGKTDGLRVDAGGL-IWASA--GDGVHVLTPDGDE---LGRVL-TPQT-TSNLCFGGPEGRTLYMTVS  276 (296)
T ss_dssp             CEEEEEEEECCSSSCCCSEEEBTTSC-EEEEE--TTEEEEECTTSCE---EEEEE-CSSC-CCEEEEESTTSCEEEEEET
T ss_pred             cCcCCCeEeeCCCCCCCeEEECCCCC-EEEEc--CCeEEEECCCCCE---EEEEE-CCCC-ceeEEEECCCCCEEEEEcC
Confidence            54   2 2212345688999999997 99988  6789999987532   22222 2223 889998 4676 5999986


Q ss_pred             c
Q 017371          284 K  284 (372)
Q Consensus       284 ~  284 (372)
                      .
T Consensus       277 ~  277 (296)
T 3e5z_A          277 T  277 (296)
T ss_dssp             T
T ss_pred             C
Confidence            5

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.66  E-value=5.1e-16  Score=157.66  Aligned_cols=182  Identities=13%  Similarity=0.103  Sum_probs=132.6

Q ss_pred             CCCCccEEEcC-CCcEEEEe-cCCeEEEEe-CC-----ceEEEE-ecCCCcccCeEEc-CCCCEEEEeCC-CcEEEEcCC
Q 017371           78 VNHPEDASMDK-NGVIYTAT-RDGWIKRLQ-DG-----TWVNWK-FIDSQTLVGLTST-KEGHLIICDNA-NGLHKVSED  146 (372)
Q Consensus        78 ~~~p~~i~~d~-~G~l~v~~-~~g~i~~~~-~g-----~~~~~~-~~~~~p~~gl~~d-~dG~l~v~~~~-~gv~~~~~~  146 (372)
                      +..|++|++++ ++.||+++ .+++|++++ ++     ....+. .....|. ||++| ..|+|||++.. ..|.+++.+
T Consensus       405 ~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~-glavD~~~g~LY~tD~~~~~I~v~d~d  483 (699)
T 1n7d_A          405 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD-GLAVDWIHSNIYWTDSVLGTVSVADTK  483 (699)
T ss_dssp             CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CC-CEECCCSSSBCEECCTTTSCEEEEBSS
T ss_pred             CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcc-eEEEEeeCCcEEEEeccCCeEEEEecC
Confidence            56899999996 67999998 678999998 54     222222 2345788 99999 56799999866 568888866


Q ss_pred             C--cEEEeeecCCcccccccceEEcc-CCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEe-CCccCcc
Q 017371          147 G--VENFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFAN  222 (372)
Q Consensus       147 g--~~~l~~~~~~~~~~~~~~l~~d~-dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~-~~~~~~~  222 (372)
                      |  .+.+..    ..+..|++|++|+ .|+||++|..                ..++|+++++++...+++. ..+..|+
T Consensus       484 g~~~~~l~~----~~~~~P~giavDp~~g~ly~td~~----------------~~~~I~~~~~dG~~~~~l~~~~l~~Pn  543 (699)
T 1n7d_A          484 GVKRKTLFR----EQGSKPRAIVVDPVHGFMYWTDWG----------------TPAKIKKGGLNGVDIYSLVTENIQWPN  543 (699)
T ss_dssp             SCCEEEECC----CSSCCCCCEECCSSSSCCEECCCS----------------SSCCEEBCCSSSCCCCEESCSSCSSCC
T ss_pred             CCceEEEEe----CCCCCcceEEEccCCCcEEEcccC----------------CCCeEEEEeCCCCCeeEEEeCCCCCcc
Confidence            6  444432    1235789999998 5789998753                2378999988744443433 5688999


Q ss_pred             eEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeecc--CCCCCCceeEEcCCCCEEEEEec
Q 017371          223 GVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAE--NLPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       223 gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~--~~~g~p~~i~~d~~G~lwva~~~  284 (372)
                      ||+++++++.|||+++..++|++++++|..   ...+..  ...+.|.+|++|.+ +||++++.
T Consensus       544 Glavd~~~~~LY~aD~~~~~I~~~d~dG~~---~~~~~~~~~~~~~P~glavd~~-~lywtd~~  603 (699)
T 1n7d_A          544 GITLDLLSGRLYWVDSKLHSISSIDVNGGN---RKTILEDEKRLAHPFSLAVFED-KVFWTDII  603 (699)
T ss_dssp             CEEECTTTCCEEEEETTTTEEEEECSSSSC---CEEECCCSSSCSSCCCCEEETT-EEEEECST
T ss_pred             EEEEeccCCEEEEEecCCCeEEEEccCCCc---eEEEEecCCcCCCceEeEEECC-EEEEEeCC
Confidence            999999988899999999999999998742   223332  12346999999986 67777776

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.64  E-value=7e-15  Score=141.09  Aligned_cols=181  Identities=12%  Similarity=0.124  Sum_probs=126.2

Q ss_pred             CCCCccEEEcCCCc-EEEEec-CC----eEEEEe-CCceE--EEEecCCCcccCeEEcC-CCCEEEEeCC-CcEEEEcCC
Q 017371           78 VNHPEDASMDKNGV-IYTATR-DG----WIKRLQ-DGTWV--NWKFIDSQTLVGLTSTK-EGHLIICDNA-NGLHKVSED  146 (372)
Q Consensus        78 ~~~p~~i~~d~~G~-l~v~~~-~g----~i~~~~-~g~~~--~~~~~~~~p~~gl~~d~-dG~l~v~~~~-~gv~~~~~~  146 (372)
                      +..|.+|++|++|. ||+++. ++    .++.++ ++.+.  ........|. ++++++ +|+|||++.. ..|++++.+
T Consensus       178 ~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~~~~~p~-giavdp~~g~lyv~d~~~~~V~~~~~~  256 (430)
T 3tc9_A          178 LSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITELTKGQNCN-GAETHPINGELYFNSWNAGQVFRYDFT  256 (430)
T ss_dssp             CSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEEEECSSCC-CEEECTTTCCEEEEETTTTEEEEEETT
T ss_pred             CCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeeeeeccCCCce-EEEEeCCCCEEEEEECCCCEEEEEECC
Confidence            56899999999997 999984 22    466677 55443  2223467899 999999 8999999876 468999954


Q ss_pred             C--cEEEeeecCCcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCC--CCeE---EEEeC--
Q 017371          147 G--VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS--SNIT---TLVAD--  216 (372)
Q Consensus       147 g--~~~l~~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~--t~~~---~~~~~--  216 (372)
                      +  ...+... ..  ...|++|+++++|+ ||++|.                 ..++|++++.+  ++++   ..+..  
T Consensus       257 ~~~~~~~~~~-~~--~~~P~gia~~pdG~~lyv~d~-----------------~~~~I~~~~~d~~~~~~~~~~~~ag~~  316 (430)
T 3tc9_A          257 TQETTPLFTI-QD--SGWEFHIQFHPSGNYAYIVVV-----------------NQHYILRSDYDWKTKRLTTPYIVCGQQ  316 (430)
T ss_dssp             TTEEEEEEEC-SS--SSCCEEEEECTTSSEEEEEET-----------------TTTEEEEEEEETTTTEECCCEEEEECT
T ss_pred             CCcEEEEEEc-CC--CCcceeEEEcCCCCEEEEEEC-----------------CCCEEEEEeCCcccccccceEEEeccC
Confidence            4  4333221 11  24688999999998 999986                 46788887654  2322   22221  


Q ss_pred             -------------CccCcc-eEEEec--------CCCEEEEEeCCCCeEEEEEccCCCCcceeeeccC------------
Q 017371          217 -------------GFYFAN-GVALSR--------DEDYVVVCESWKFRCRKYWLKGERKGKLETFAEN------------  262 (372)
Q Consensus       217 -------------~~~~~~-gi~~~~--------dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~------------  262 (372)
                                   .+..|. |++++.        +| .|||+++.+++|.+++.+|.    ...+...            
T Consensus       317 g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g-~lyvaD~~n~~I~~i~~~G~----v~~~~g~g~~~~~G~~dG~  391 (430)
T 3tc9_A          317 GAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEY-DFYFCDRENHCIRILTPQGR----VTTFAGRGSNGTSGYNDGD  391 (430)
T ss_dssp             TCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCE-EEEEEEGGGTEEEEECTTSE----EEEEEECCTTSSSSCBCEE
T ss_pred             CCCCCCCCCCcceEeCCCcceEEEccccccccCCCC-eEEEEECCCcEEEEECCCCc----EEEEEeCCCCCCCcccCCC
Confidence                         255687 788853        34 69999999999999986652    1111110            


Q ss_pred             -----CCCCCceeEEcC-CCCEEEEEec
Q 017371          263 -----LPGAPDNINLAP-DGTFWIAIIK  284 (372)
Q Consensus       263 -----~~g~p~~i~~d~-~G~lwva~~~  284 (372)
                           .-..|.+|++|+ +|+|||++..
T Consensus       392 ~~~~~~~~~P~giavd~~~g~lyVaD~~  419 (430)
T 3tc9_A          392 LRQEARFNHPEGIVYDEERECFFIGDRE  419 (430)
T ss_dssp             TTTTCBCSSEEEEEEETTTTEEEEEEGG
T ss_pred             chhhcEeCCCcEEEEECCCCEEEEEECC
Confidence                 012699999999 6999999987

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.63  E-value=3e-14  Score=129.76  Aligned_cols=179  Identities=17%  Similarity=0.217  Sum_probs=129.0

Q ss_pred             CCCccEEEcCC-CcEEEEecCCeEEEEe-CCceEEE-Eec-----CCCcccCeEEcCCCCEEEEeCC-------------
Q 017371           79 NHPEDASMDKN-GVIYTATRDGWIKRLQ-DGTWVNW-KFI-----DSQTLVGLTSTKEGHLIICDNA-------------  137 (372)
Q Consensus        79 ~~p~~i~~d~~-G~l~v~~~~g~i~~~~-~g~~~~~-~~~-----~~~p~~gl~~d~dG~l~v~~~~-------------  137 (372)
                      ..|.+++++++ |+||+++..++|++++ +|+.+.+ ...     ...+. +++++++|++|+++..             
T Consensus        71 ~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~-~i~~d~~g~l~v~~~~~~~~~~~~~~~~~  149 (314)
T 1pjx_A           71 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCN-DCAFDYEGNLWITAPAGEVAPADYTRSMQ  149 (314)
T ss_dssp             CCEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCC-EEEECTTSCEEEEECBCBCTTSCCCBTTS
T ss_pred             CCCceEEEecCCCcEEEEECCCCEEEEeCCCCEEEEEeccCCCccccCCc-CEEECCCCCEEEEecCccccccccccccc
Confidence            46899999999 9999999766899999 7766554 221     23477 9999999999999864             


Q ss_pred             ---CcEEEEcCCC-cEEEeeecCCcccccccceEEc----cCC-cEEEEeCCCCCCCcccccccccccCCCeEEEEeCC-
Q 017371          138 ---NGLHKVSEDG-VENFLSYVNGSKLRFANDVVEA----SDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS-  207 (372)
Q Consensus       138 ---~gv~~~~~~g-~~~l~~~~~~~~~~~~~~l~~d----~dG-~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~-  207 (372)
                         .++++++.++ ...+...     ...+++++++    ++| .+|+++.                 ..++|+++|.+ 
T Consensus       150 ~~~~~l~~~~~~g~~~~~~~~-----~~~~~~i~~~~~~d~dg~~l~v~~~-----------------~~~~i~~~~~~~  207 (314)
T 1pjx_A          150 EKFGSIYCFTTDGQMIQVDTA-----FQFPNGIAVRHMNDGRPYQLIVAET-----------------PTKKLWSYDIKG  207 (314)
T ss_dssp             SSCEEEEEECTTSCEEEEEEE-----ESSEEEEEEEECTTSCEEEEEEEET-----------------TTTEEEEEEEEE
T ss_pred             CCCCeEEEECCCCCEEEeccC-----CCCcceEEEecccCCCCCEEEEEEC-----------------CCCeEEEEECCC
Confidence               3689998557 5444322     2356789999    999 6899865                 35789999864 


Q ss_pred             CCeEE---EEe--CC-c-cCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCC-EE
Q 017371          208 SNITT---LVA--DG-F-YFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FW  279 (372)
Q Consensus       208 t~~~~---~~~--~~-~-~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~-lw  279 (372)
                      +++..   .+.  .. . ..|.+++++++|+ +|+++...++|.+|+.++.+..  ..+. .....|.+++++++|+ ||
T Consensus       208 ~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~~~~~~i~~~d~~~g~~~--~~~~-~~~~~~~~i~~~~dg~~l~  283 (314)
T 1pjx_A          208 PAKIENKKVWGHIPGTHEGGADGMDFDEDNN-LLVANWGSSHIEVFGPDGGQPK--MRIR-CPFEKPSNLHFKPQTKTIF  283 (314)
T ss_dssp             TTEEEEEEEEEECCCCSSCEEEEEEEBTTCC-EEEEEETTTEEEEECTTCBSCS--EEEE-CSSSCEEEEEECTTSSEEE
T ss_pred             CCccccceEEEECCCCCCCCCCceEECCCCC-EEEEEcCCCEEEEEcCCCCcEe--EEEe-CCCCCceeEEECCCCCEEE
Confidence            35432   111  11 1 4688999999996 9999877889999998722221  1221 1224688999999998 99


Q ss_pred             EEEec
Q 017371          280 IAIIK  284 (372)
Q Consensus       280 va~~~  284 (372)
                      +++..
T Consensus       284 v~~~~  288 (314)
T 1pjx_A          284 VTEHE  288 (314)
T ss_dssp             EEETT
T ss_pred             EEeCC
Confidence            99876

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.63  E-value=3.2e-13  Score=123.82  Aligned_cols=208  Identities=16%  Similarity=0.216  Sum_probs=142.7

Q ss_pred             EEEcCCCcEEEEecCCeEEEEe-CCceEEEEecC-CCcccCeEEcCCCCEEEEeCCCcEEEEcCCC-cEEEeeecCCccc
Q 017371           84 ASMDKNGVIYTATRDGWIKRLQ-DGTWVNWKFID-SQTLVGLTSTKEGHLIICDNANGLHKVSEDG-VENFLSYVNGSKL  160 (372)
Q Consensus        84 i~~d~~G~l~v~~~~g~i~~~~-~g~~~~~~~~~-~~p~~gl~~d~dG~l~v~~~~~gv~~~~~~g-~~~l~~~~~~~~~  160 (372)
                      .+++ +|.||+++.+|.|++++ +|+........ .... .+..+++|+||++....+++.++.+| ..... ....   
T Consensus       103 ~~~~-~~~l~v~t~~~~l~~~d~~g~~~~~~~~~~~~~~-~~~~~~~g~l~vgt~~~~l~~~d~~g~~~~~~-~~~~---  176 (330)
T 3hxj_A          103 FTIF-EDILYVTSMDGHLYAINTDGTEKWRFKTKKAIYA-TPIVSEDGTIYVGSNDNYLYAINPDGTEKWRF-KTND---  176 (330)
T ss_dssp             EEEE-TTEEEEECTTSEEEEECTTSCEEEEEECSSCCCS-CCEECTTSCEEEECTTSEEEEECTTSCEEEEE-ECSS---
T ss_pred             ceEE-CCEEEEEecCCEEEEEcCCCCEEEEEcCCCceee-eeEEcCCCEEEEEcCCCEEEEECCCCCEeEEE-ecCC---
Confidence            3444 78999999889999999 75433222222 2234 78889899999998768899999447 32211 1121   


Q ss_pred             ccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEe-CCccCcceEEEecCCCEEEEEeCC
Q 017371          161 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDEDYVVVCESW  239 (372)
Q Consensus       161 ~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~-~~~~~~~gi~~~~dg~~l~v~~~~  239 (372)
                      .....+.+|++|+||++                   . ++|+++|. +++..... ........++++++|+ +|++.. 
T Consensus       177 ~~~~~~~~d~~g~l~v~-------------------t-~~l~~~d~-~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~-  233 (330)
T 3hxj_A          177 AITSAASIGKDGTIYFG-------------------S-DKVYAINP-DGTEKWNFYAGYWTVTRPAISEDGT-IYVTSL-  233 (330)
T ss_dssp             CCCSCCEECTTCCEEEE-------------------S-SSEEEECT-TSCEEEEECCSSCCCSCCEECTTSC-EEEEET-
T ss_pred             CceeeeEEcCCCEEEEE-------------------e-CEEEEECC-CCcEEEEEccCCcceeceEECCCCe-EEEEcC-
Confidence            24567889999999996                   2 67999994 45544332 2234456788888876 888764 


Q ss_pred             CCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCc
Q 017371          240 KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGG  319 (372)
Q Consensus       240 ~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~  319 (372)
                      ++.|++++.++...   ..+. .....+..+.+|++|+||+++..                                   
T Consensus       234 ~~gl~~~~~~g~~~---~~~~-~~~~~~~~~~~~~~g~l~v~t~~-----------------------------------  274 (330)
T 3hxj_A          234 DGHLYAINPDGTEK---WRFK-TGKRIESSPVIGNTDTIYFGSYD-----------------------------------  274 (330)
T ss_dssp             TTEEEEECTTSCEE---EEEE-CSSCCCSCCEECTTSCEEEECTT-----------------------------------
T ss_pred             CCeEEEECCCCCEe---EEee-CCCCccccceEcCCCeEEEecCC-----------------------------------
Confidence            56799997654322   2222 22234567889999999999875                                   


Q ss_pred             eEEEEECCCCcEEEEEECCCCCeeccceeeEE-ECCEEEEEeCCC
Q 017371          320 AHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQ-VDNHLYVISLTS  363 (372)
Q Consensus       320 ~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~-~~g~L~igs~~~  363 (372)
                      +.++++|++|+.+..+..+..    .+.++.. .+|+||+++..+
T Consensus       275 ggl~~~d~~g~~~~~~~~~~~----~~~~~~~d~~g~l~~gt~~G  315 (330)
T 3hxj_A          275 GHLYAINPDGTEKWNFETGSW----IIATPVIDENGTIYFGTRNG  315 (330)
T ss_dssp             CEEEEECTTSCEEEEEECSSC----CCSCCEECTTCCEEEECTTS
T ss_pred             CCEEEECCCCcEEEEEEcCCc----cccceEEcCCCEEEEEcCCC
Confidence            589999999999888776532    3456666 579999999764

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.60  E-value=8.2e-13  Score=121.11  Aligned_cols=233  Identities=10%  Similarity=0.096  Sum_probs=153.6

Q ss_pred             CCCCccEEEcCCCc-EEEEec-CCeEEEEe--CCce-EEEEecCCCcccC-eEEcCCCCEEEEeCCC----cEEEEc-CC
Q 017371           78 VNHPEDASMDKNGV-IYTATR-DGWIKRLQ--DGTW-VNWKFIDSQTLVG-LTSTKEGHLIICDNAN----GLHKVS-ED  146 (372)
Q Consensus        78 ~~~p~~i~~d~~G~-l~v~~~-~g~i~~~~--~g~~-~~~~~~~~~p~~g-l~~d~dG~l~v~~~~~----gv~~~~-~~  146 (372)
                      ...| +++++++|. +|+++. ++.|+.++  +++. .........|. . ++++++|+.+++....    .+..++ .+
T Consensus        40 ~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~  117 (331)
T 3u4y_A           40 YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSM-ADVDITPDDQFAVTVTGLNHPFNMQSYSFLK  117 (331)
T ss_dssp             CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCC-CCEEECTTSSEEEECCCSSSSCEEEEEETTT
T ss_pred             CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCc-cceEECCCCCEEEEecCCCCcccEEEEECCC
Confidence            3456 999999996 888884 88999999  5665 44445556777 6 9999999844454444    588888 55


Q ss_pred             C--cEEEeeecCCcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCe---EEEEeCCCCeE----EEEeC
Q 017371          147 G--VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQ---LLKYDPSSNIT----TLVAD  216 (372)
Q Consensus       147 g--~~~l~~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~---v~~~d~~t~~~----~~~~~  216 (372)
                      +  ...+..   +   ..++++++++||+ +|+++..                 .+.   +|.++.+ +..    .....
T Consensus       118 ~~~~~~~~~---~---~~~~~~~~spdg~~l~~~~~~-----------------~~~~i~~~~~~~~-g~~~~~~~~~~~  173 (331)
T 3u4y_A          118 NKFISTIPI---P---YDAVGIAISPNGNGLILIDRS-----------------SANTVRRFKIDAD-GVLFDTGQEFIS  173 (331)
T ss_dssp             TEEEEEEEC---C---TTEEEEEECTTSSCEEEEEET-----------------TTTEEEEEEECTT-CCEEEEEEEEEC
T ss_pred             CCeEEEEEC---C---CCccceEECCCCCEEEEEecC-----------------CCceEEEEEECCC-CcEeecCCcccc
Confidence            5  232211   1   2467999999995 8887542                 233   4444433 332    12223


Q ss_pred             CccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcc-eeeeccCCCCCCceeEEcCCCC-EEEEEecCchhHHHHhh
Q 017371          217 GFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGK-LETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILN  294 (372)
Q Consensus       217 ~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~-~~~~~~~~~g~p~~i~~d~~G~-lwva~~~~~~~~~~~~~  294 (372)
                      ....|.+++++|||+++|++....+.|..|++.+.+... ...+.  ....|.++++++||+ +|++...          
T Consensus       174 ~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~--~~~~~~~~~~spdg~~l~v~~~~----------  241 (331)
T 3u4y_A          174 GGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG--TNNLPGTIVVSRDGSTVYVLTES----------  241 (331)
T ss_dssp             SSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE--CSSCCCCEEECTTSSEEEEECSS----------
T ss_pred             CCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc--CCCCCceEEECCCCCEEEEEEcC----------
Confidence            445688999999999999999888899999987544311 22222  234689999999998 7887654          


Q ss_pred             cchhHHHHHHhcCccccccccCCCceEEEEECCC-CcE--EEEEECC---CCCeeccceeeEEE--CCEEEEEeCCCCeE
Q 017371          295 SSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED-GTI--IRNLVDP---TGQLMSFVTSGLQV--DNHLYVISLTSNFI  366 (372)
Q Consensus       295 ~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~-g~~--~~~~~~~---~g~~~~~~t~~~~~--~g~L~igs~~~~~i  366 (372)
                                              .+.|..+|.+ |++  +..+...   ++........+...  +..||+++..++.|
T Consensus       242 ------------------------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v  297 (331)
T 3u4y_A          242 ------------------------TVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISREL  297 (331)
T ss_dssp             ------------------------EEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEE
T ss_pred             ------------------------CCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcE
Confidence                                    4568888865 555  3333321   11111111234443  46899999999999


Q ss_pred             EEEeCC
Q 017371          367 GKVQLS  372 (372)
Q Consensus       367 ~~~~~~  372 (372)
                      .+++++
T Consensus       298 ~v~d~~  303 (331)
T 3u4y_A          298 KVFTIS  303 (331)
T ss_dssp             EEEETT
T ss_pred             EEEEec
Confidence            999874

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=99.60  E-value=1e-13  Score=133.59  Aligned_cols=184  Identities=13%  Similarity=0.140  Sum_probs=127.0

Q ss_pred             CCCCCccEEE-------cCCCc-EEEEecCC-------eEEEEe---CCceE------EEEecCCCcccCeEEcC-CCCE
Q 017371           77 SVNHPEDASM-------DKNGV-IYTATRDG-------WIKRLQ---DGTWV------NWKFIDSQTLVGLTSTK-EGHL  131 (372)
Q Consensus        77 ~~~~p~~i~~-------d~~G~-l~v~~~~g-------~i~~~~---~g~~~------~~~~~~~~p~~gl~~d~-dG~l  131 (372)
                      .+..|.+|++       |++|. ||+++..+       .|+.++   +|.+.      .+. ...+|+ ++++++ +|.|
T Consensus       184 ~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~-~~~~p~-giavdp~~g~L  261 (496)
T 3kya_A          184 PTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIA-AYKQCN-GATIHPINGEL  261 (496)
T ss_dssp             SCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEE-EESCCC-CEEECTTTCCE
T ss_pred             ccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeec-cCCCce-EEEEcCCCCeE
Confidence            4667999999       99886 99999543       377886   35553      333 456899 999998 6899


Q ss_pred             EEEeCCCc-EEEEc-C-------CC-c-E-----------EEeeecCCcccccccceEEccCCc-EEEEeCCCCCCCccc
Q 017371          132 IICDNANG-LHKVS-E-------DG-V-E-----------NFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEY  188 (372)
Q Consensus       132 ~v~~~~~g-v~~~~-~-------~g-~-~-----------~l~~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~  188 (372)
                      |+++...+ |++++ .       ++ . +           .+.. .+  ....+.+|+++++|+ |||+|.         
T Consensus       262 Yvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~-~~--~~~~p~~ia~~p~G~~lYvaD~---------  329 (496)
T 3kya_A          262 YFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFT-IA--DPSWEFQIFIHPTGKYAYFGVI---------  329 (496)
T ss_dssp             EEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEE-CS--SSSCCEEEEECTTSSEEEEEET---------
T ss_pred             EEEECCCCEEEEEecccccccccCceeecccccccccccceeEe-cC--CCCCceEEEEcCCCCEEEEEeC---------
Confidence            99998765 99999 5       45 4 1           2211 11  123577999999998 899987         


Q ss_pred             ccccccccCCCeEEEEeC--CCCeE---EEEeC---------------CccCcc-eEEEe-------cCCCEEEEEeCCC
Q 017371          189 CLDILEGKPHGQLLKYDP--SSNIT---TLVAD---------------GFYFAN-GVALS-------RDEDYVVVCESWK  240 (372)
Q Consensus       189 ~~~~~~~~~~g~v~~~d~--~t~~~---~~~~~---------------~~~~~~-gi~~~-------~dg~~l~v~~~~~  240 (372)
                              .+++|++++.  .++.+   ..++.               .+..|. +++++       .++ .|||+++.+
T Consensus       330 --------~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g-~lyVaD~~N  400 (496)
T 3kya_A          330 --------NNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEY-DFYFVDRLN  400 (496)
T ss_dssp             --------TTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCE-EEEEEEGGG
T ss_pred             --------CCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCC-eEEEEECCC
Confidence                    5678999654  33433   23321               245688 77776       344 599999999


Q ss_pred             CeEEEEEccCCCCccee--------------eeccC------CCCCCceeEEcCC-CCEEEEEec
Q 017371          241 FRCRKYWLKGERKGKLE--------------TFAEN------LPGAPDNINLAPD-GTFWIAIIK  284 (372)
Q Consensus       241 ~~i~~~~~~g~~~~~~~--------------~~~~~------~~g~p~~i~~d~~-G~lwva~~~  284 (372)
                      ++|.+++.+|. .....              .+.+.      .-..|.+|++|++ |+|||++..
T Consensus       401 ~rIr~i~~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~  464 (496)
T 3kya_A          401 FCVRKVTPEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQV  464 (496)
T ss_dssp             TEEEEECTTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETT
T ss_pred             CEEEEEeCCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCC
Confidence            99999997652 11110              00011      1125889999997 999999988

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.59  E-value=4e-12  Score=117.24  Aligned_cols=217  Identities=14%  Similarity=0.154  Sum_probs=150.7

Q ss_pred             CCCccEEEcCCCc-EEEEe-cCCeEEEEe--CCceEE-EEecCC---------CcccCeEEcCCCC-EEEEeC--CCcEE
Q 017371           79 NHPEDASMDKNGV-IYTAT-RDGWIKRLQ--DGTWVN-WKFIDS---------QTLVGLTSTKEGH-LIICDN--ANGLH  141 (372)
Q Consensus        79 ~~p~~i~~d~~G~-l~v~~-~~g~i~~~~--~g~~~~-~~~~~~---------~p~~gl~~d~dG~-l~v~~~--~~gv~  141 (372)
                      ..|.+++++++|. +|+++ .++.|..++  +++... +....+         .|. +++++++|+ +|+++.  ...+.
T Consensus        89 ~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~~i~  167 (353)
T 3vgz_A           89 LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPR-ELVADDATNTVYISGIGKESVIW  167 (353)
T ss_dssp             SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEE-EEEEETTTTEEEEEEESSSCEEE
T ss_pred             CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCc-eEEECCCCCEEEEEecCCCceEE
Confidence            3689999999986 89888 578999999  565433 322211         257 899999986 788773  24488


Q ss_pred             EEc-CCC-cEEEeeecCCcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCC-
Q 017371          142 KVS-EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-  217 (372)
Q Consensus       142 ~~~-~~g-~~~l~~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~-  217 (372)
                      .+| .++ ...... ..+   ..+.+++++++|+ +|+++                  ..+.|+.+|..+++....... 
T Consensus       168 ~~d~~~~~~~~~~~-~~~---~~~~~~~~s~dg~~l~~~~------------------~~~~i~~~d~~~~~~~~~~~~~  225 (353)
T 3vgz_A          168 VVDGGNIKLKTAIQ-NTG---KMSTGLALDSEGKRLYTTN------------------ADGELITIDTADNKILSRKKLL  225 (353)
T ss_dssp             EEETTTTEEEEEEC-CCC---TTCCCCEEETTTTEEEEEC------------------TTSEEEEEETTTTEEEEEEECC
T ss_pred             EEcCCCCceEEEec-CCC---CccceEEECCCCCEEEEEc------------------CCCeEEEEECCCCeEEEEEEcC
Confidence            898 555 222111 111   3478899999986 66653                  357899999988876654322 


Q ss_pred             ----ccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCC-EEEEEecCchhHHHH
Q 017371          218 ----FYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKI  292 (372)
Q Consensus       218 ----~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwva~~~~~~~~~~~  292 (372)
                          ...+.++++++|++++|+++...+.|+.+++.+.+..  ..+.  . +.+.+++++++|+ +|++...        
T Consensus       226 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~--~~~~--~-~~~~~~~~s~dg~~l~v~~~~--------  292 (353)
T 3vgz_A          226 DDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNIL--AKVA--A-PESLAVLFNPARNEAYVTHRQ--------  292 (353)
T ss_dssp             CSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEE--EEEE--C-SSCCCEEEETTTTEEEEEETT--------
T ss_pred             CCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEE--EEEE--c-CCCceEEECCCCCEEEEEECC--------
Confidence                3345679999999999999988889999998654321  1121  1 2367899999997 8888865        


Q ss_pred             hhcchhHHHHHHhcCccccccccCCCceEEEEECC-CCcEEEEEECCCCCeeccceeeEEE-C-CEEEEEeCC
Q 017371          293 LNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQV-D-NHLYVISLT  362 (372)
Q Consensus       293 ~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~-~-g~L~igs~~  362 (372)
                                                .+.|..+|. +++.+..+....     .+.++... + +.||+++..
T Consensus       293 --------------------------~~~v~~~d~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          293 --------------------------AGKVSVIDAKSYKVVKTFDTPT-----HPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             --------------------------TTEEEEEETTTTEEEEEEECCS-----EEEEEEECTTSCEEEEEEEC
T ss_pred             --------------------------CCeEEEEECCCCeEEEEEecCC-----CCCeEEEcCCCCEEEEEEcc
Confidence                                      467888885 477777776532     35666665 3 569998876

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.58  E-value=9.2e-14  Score=127.93  Aligned_cols=199  Identities=16%  Similarity=0.146  Sum_probs=134.4

Q ss_pred             ecCCCcccCeEEcCCCCEEEEeCC-CcEEEEc-CCC-cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCccccc
Q 017371          114 FIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCL  190 (372)
Q Consensus       114 ~~~~~p~~gl~~d~dG~l~v~~~~-~gv~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~  190 (372)
                      .....+. +++++++|+||+++.. .+|++++ .++ ...+... .   ...+.+++++++|++|+++...         
T Consensus        42 ~~~~~~~-~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~---~~~~~~i~~~~dg~l~v~~~~~---------  107 (333)
T 2dg1_A           42 KKGLQLE-GLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVS-H---KANPAAIKIHKDGRLFVCYLGD---------  107 (333)
T ss_dssp             SSCCCEE-EEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEEC-S---SSSEEEEEECTTSCEEEEECTT---------
T ss_pred             ccCcccc-CcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeC-C---CCCcceEEECCCCcEEEEeCCC---------
Confidence            3344566 9999999999998654 5699999 555 5444321 1   1357899999999999986520         


Q ss_pred             ccccccCCCeEEEEeCCCCeEEEEeC---CccCcceEEEecCCCEEEEEeCC------CCeEEEEEccCCCCcceeeecc
Q 017371          191 DILEGKPHGQLLKYDPSSNITTLVAD---GFYFANGVALSRDEDYVVVCESW------KFRCRKYWLKGERKGKLETFAE  261 (372)
Q Consensus       191 ~~~~~~~~g~v~~~d~~t~~~~~~~~---~~~~~~gi~~~~dg~~l~v~~~~------~~~i~~~~~~g~~~~~~~~~~~  261 (372)
                          ....++|+++|+++++.+.+..   ....+++++++++|+ +|+++..      ..+|++++.++.+.   ..+..
T Consensus       108 ----~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~  179 (333)
T 2dg1_A          108 ----FKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRTV---TPIIQ  179 (333)
T ss_dssp             ----SSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCCE---EEEEE
T ss_pred             ----CCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCC-EEEEeccccccCCCceEEEEeCCCCEE---EEeec
Confidence                0123689999998887764432   234578899999997 8888764      36799998765322   22221


Q ss_pred             CCCCCCceeEEcCCCC-EEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEECC--CCcEEEEEE--
Q 017371          262 NLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE--DGTIIRNLV--  336 (372)
Q Consensus       262 ~~~g~p~~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~--~g~~~~~~~--  336 (372)
                      . ...|.+++++++|+ +|++...                                  .+.|.+++.  +|+.+..+.  
T Consensus       180 ~-~~~~~~i~~~~dg~~l~v~~~~----------------------------------~~~i~~~d~~~~g~~~~~~~~~  224 (333)
T 2dg1_A          180 N-ISVANGIALSTDEKVLWVTETT----------------------------------ANRLHRIALEDDGVTIQPFGAT  224 (333)
T ss_dssp             E-ESSEEEEEECTTSSEEEEEEGG----------------------------------GTEEEEEEECTTSSSEEEEEEE
T ss_pred             C-CCcccceEECCCCCEEEEEeCC----------------------------------CCeEEEEEecCCCcCcccccce
Confidence            1 12478999999996 9998865                                  346777775  455433221  


Q ss_pred             ---CCCCCeeccceeeEEE-CCEEEEEeCCCCeEEEEeC
Q 017371          337 ---DPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL  371 (372)
Q Consensus       337 ---~~~g~~~~~~t~~~~~-~g~L~igs~~~~~i~~~~~  371 (372)
                         ...+  ...+..+.++ +|+||+++..++.|.+++.
T Consensus       225 ~~~~~~~--~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~  261 (333)
T 2dg1_A          225 IPYYFTG--HEGPDSCCIDSDDNLYVAMYGQGRVLVFNK  261 (333)
T ss_dssp             EEEECCS--SSEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred             EEEecCC--CCCCCceEECCCCCEEEEEcCCCEEEEECC
Confidence               1112  1245667776 6899999988889998874

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.57  E-value=1.8e-12  Score=116.83  Aligned_cols=215  Identities=13%  Similarity=0.172  Sum_probs=147.9

Q ss_pred             CCcEEEEecCCeEEEEe--CCceEEEEecC---CCcccCeEEcCCCCEEEEeCCCcEEEEcCCCcEEEeeecCCcccccc
Q 017371           89 NGVIYTATRDGWIKRLQ--DGTWVNWKFID---SQTLVGLTSTKEGHLIICDNANGLHKVSEDGVENFLSYVNGSKLRFA  163 (372)
Q Consensus        89 ~G~l~v~~~~g~i~~~~--~g~~~~~~~~~---~~p~~gl~~d~dG~l~v~~~~~gv~~~~~~g~~~l~~~~~~~~~~~~  163 (372)
                      +..|+.+..+++|+.++  +|+.. |....   ..+. +++++++|+++++ ...+++.++++|........+.  ...+
T Consensus         5 ~~~lv~~~~~~~v~~~d~~tG~~~-w~~~~~~~~~~~-~~~~~pdG~ilvs-~~~~V~~~d~~G~~~W~~~~~~--~~~~   79 (276)
T 3no2_A            5 QHLLVGGSGWNKIAIINKDTKEIV-WEYPLEKGWECN-SVAATKAGEILFS-YSKGAKMITRDGRELWNIAAPA--GCEM   79 (276)
T ss_dssp             CEEEEECTTCSEEEEEETTTTEEE-EEEECCTTCCCC-EEEECTTSCEEEE-CBSEEEEECTTSCEEEEEECCT--TCEE
T ss_pred             CcEEEeeCCCCEEEEEECCCCeEE-EEeCCCccCCCc-CeEECCCCCEEEe-CCCCEEEECCCCCEEEEEcCCC--Cccc
Confidence            33445555788999999  66654 33322   2567 8999999999995 4578999998772222111111  1234


Q ss_pred             cceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEe--C----CccCcceEEEecCCCEEEEEe
Q 017371          164 NDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA--D----GFYFANGVALSRDEDYVVVCE  237 (372)
Q Consensus       164 ~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~--~----~~~~~~gi~~~~dg~~l~v~~  237 (372)
                      +...+.++|++++++..                ..++|+.+|++.+.+..+.  .    ....+.++++.++|+ ++++.
T Consensus        80 ~~~~~~~dG~~lv~~~~----------------~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~-~lv~~  142 (276)
T 3no2_A           80 QTARILPDGNALVAWCG----------------HPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGN-YLVPL  142 (276)
T ss_dssp             EEEEECTTSCEEEEEES----------------TTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSC-EEEEE
T ss_pred             cccEECCCCCEEEEecC----------------CCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCC-EEEEe
Confidence            56788899999998642                1578999998633332221  1    123466788999998 66778


Q ss_pred             CCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCC
Q 017371          238 SWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLG  317 (372)
Q Consensus       238 ~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~  317 (372)
                      ..+++|..|+.+|....   .+.  .++.|.+....++|+++|+...                                 
T Consensus       143 ~~~~~v~~~d~~G~~~w---~~~--~~~~~~~~~~~~~g~~~v~~~~---------------------------------  184 (276)
T 3no2_A          143 FATSEVREIAPNGQLLN---SVK--LSGTPFSSAFLDNGDCLVACGD---------------------------------  184 (276)
T ss_dssp             TTTTEEEEECTTSCEEE---EEE--CSSCCCEEEECTTSCEEEECBT---------------------------------
T ss_pred             cCCCEEEEECCCCCEEE---EEE--CCCCccceeEcCCCCEEEEeCC---------------------------------
Confidence            88899999998754221   222  2345888999999999999876                                 


Q ss_pred             CceEEEEECCC-CcEEEEEECCC--CCeeccceeeEEE-CCEEEEEeCCCC
Q 017371          318 GGAHLIHVAED-GTIIRNLVDPT--GQLMSFVTSGLQV-DNHLYVISLTSN  364 (372)
Q Consensus       318 ~~~~v~~~~~~-g~~~~~~~~~~--g~~~~~~t~~~~~-~g~L~igs~~~~  364 (372)
                       .+.|+.+|++ |+++..+...+  +..+..++++... +|++|+++++++
T Consensus       185 -~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~  234 (276)
T 3no2_A          185 -AHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGH  234 (276)
T ss_dssp             -TSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTT
T ss_pred             -CCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCc
Confidence             4689999998 99999997532  3335667777775 799999998553

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=99.56  E-value=4.9e-13  Score=124.84  Aligned_cols=217  Identities=12%  Similarity=0.117  Sum_probs=137.2

Q ss_pred             ceEEEEecCCCcccCeEEcCCCCEEEEeCCCcEEEEcCCC-cEEEeee-cCCcccccccceEEccC----CcEEEEeCCC
Q 017371          108 TWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDG-VENFLSY-VNGSKLRFANDVVEASD----GSLYFTVSSS  181 (372)
Q Consensus       108 ~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~~~g-~~~l~~~-~~~~~~~~~~~l~~d~d----G~i~vtd~~~  181 (372)
                      +++.+......|. +|+++++|+|||++....|++++ +| .+.+... ........+.+|+++++    |.||+++...
T Consensus        22 ~~~~va~~l~~P~-~ia~~pdG~l~V~e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~   99 (352)
T 2ism_A           22 RVEEVVGGLEVPW-ALAFLPDGGMLIAERPGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVA   99 (352)
T ss_dssp             CEEEEECCCSCEE-EEEECTTSCEEEEETTTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEC
T ss_pred             EEEEEECCCCCce-EEEEcCCCeEEEEeCCCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecC
Confidence            4455555667899 99999999999999876788888 66 4444321 11122457889999997    8999987520


Q ss_pred             CCCCcccccccccccCCCeEEEEeCCCC---eEEEEeC-------CccCcceEEEecCCCEEEEEeC-------------
Q 017371          182 KYLPHEYCLDILEGKPHGQLLKYDPSSN---ITTLVAD-------GFYFANGVALSRDEDYVVVCES-------------  238 (372)
Q Consensus       182 ~~~~~~~~~~~~~~~~~g~v~~~d~~t~---~~~~~~~-------~~~~~~gi~~~~dg~~l~v~~~-------------  238 (372)
                      .            .....+|++++.+.+   +.+.+.+       ..+.++++++++||. ||++..             
T Consensus       100 ~------------~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~G~~~~~~~~~d~~~  166 (352)
T 2ism_A          100 E------------GGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTTGEVYERELAQDLAS  166 (352)
T ss_dssp             T------------TSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEECCCTTCGGGGGCTTC
T ss_pred             C------------CCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEECCCCCCccccCCCC
Confidence            0            001267999987644   2233322       235678999999995 999863             


Q ss_pred             CCCeEEEEEccCCCC----------cceeeeccCCCCCCceeEEcC-CCCEEEEEecCchhHHHHhhcchhHHHHHHhcC
Q 017371          239 WKFRCRKYWLKGERK----------GKLETFAENLPGAPDNINLAP-DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYP  307 (372)
Q Consensus       239 ~~~~i~~~~~~g~~~----------~~~~~~~~~~~g~p~~i~~d~-~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p  307 (372)
                      ...+|+|++.+|.-.          ...+.+...+ ..|.++++|+ +|+||+++......           +.    .|
T Consensus       167 ~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~-----------~~----~~  230 (352)
T 2ism_A          167 LGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGE-----------QG----YG  230 (352)
T ss_dssp             SSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC---------------------C
T ss_pred             CceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCC-----------CC----CC
Confidence            225899999886210          1223343222 2489999999 89999999873110           00    00


Q ss_pred             ccccccccCCCceEEEEECCCC-----------------cEEEEEECCCCCeeccceeeEEECCEEEEEeCCCCeEEEEe
Q 017371          308 KLFSQFITLGGGAHLIHVAEDG-----------------TIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQ  370 (372)
Q Consensus       308 ~~~~~~~~~~~~~~v~~~~~~g-----------------~~~~~~~~~~g~~~~~~t~~~~~~g~L~igs~~~~~i~~~~  370 (372)
                                 ...+..+.+.+                 ..+..+ .+    ...++.+.+.+|+||+++..+..|.+++
T Consensus       231 -----------~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~-~~----~~ap~G~~~~~G~l~v~~~~~~~v~~v~  294 (352)
T 2ism_A          231 -----------HDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW-PQ----GFPPGNLAFFRGDLYVAGLRGQALLRLV  294 (352)
T ss_dssp             -----------CCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC-TT----CCCEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred             -----------CeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec-CC----CCCCcceEEECCEEEEEECCCCEEEEEE
Confidence                       01233332211                 111111 11    1246677778899999999999999987


Q ss_pred             C
Q 017371          371 L  371 (372)
Q Consensus       371 ~  371 (372)
                      +
T Consensus       295 ~  295 (352)
T 2ism_A          295 L  295 (352)
T ss_dssp             E
T ss_pred             E
Confidence            5

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.56  E-value=1.6e-13  Score=124.88  Aligned_cols=178  Identities=10%  Similarity=0.070  Sum_probs=127.7

Q ss_pred             CCCccEEEcCCCcEEEEecCCeEEEEe--CCceEEEEec-----CCCcccCeEEcCCCCEEEEeCC------------Cc
Q 017371           79 NHPEDASMDKNGVIYTATRDGWIKRLQ--DGTWVNWKFI-----DSQTLVGLTSTKEGHLIICDNA------------NG  139 (372)
Q Consensus        79 ~~p~~i~~d~~G~l~v~~~~g~i~~~~--~g~~~~~~~~-----~~~p~~gl~~d~dG~l~v~~~~------------~g  139 (372)
                      ..|.+++++++|++|+++ +++|++++  +++++.+...     ..+++ ++++|++|++|+++..            .+
T Consensus        54 ~~~~~i~~~~dG~l~v~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~-di~~d~dG~l~~~~~~~~~~~~~~~~~~~~  131 (297)
T 3g4e_A           54 APVSSVALRQSGGYVATI-GTKFCALNWKEQSAVVLATVDNDKKNNRFN-DGKVDPAGRYFAGTMAEETAPAVLERHQGA  131 (297)
T ss_dssp             SCEEEEEEBTTSSEEEEE-TTEEEEEETTTTEEEEEEECCTTCSSEEEE-EEEECTTSCEEEEEEECCSBTTBCCTTCEE
T ss_pred             CceEEEEECCCCCEEEEE-CCeEEEEECCCCcEEEEEecCCCCCCCCCC-CEEECCCCCEEEecCCcccccccccCCCcE
Confidence            368899999999999998 56799999  5777666542     23467 8999999999998732            25


Q ss_pred             EEEEcCCC-cEEEeeecCCcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeC--CCCeEE---
Q 017371          140 LHKVSEDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDP--SSNITT---  212 (372)
Q Consensus       140 v~~~~~~g-~~~l~~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~--~t~~~~---  212 (372)
                      |++++.+| ...+...     ...++++++++||+ +|++++                 ..++|+++|.  .+++..   
T Consensus       132 l~~~d~~g~~~~~~~~-----~~~pngi~~spdg~~lyv~~~-----------------~~~~i~~~~~d~~~G~~~~~~  189 (297)
T 3g4e_A          132 LYSLFPDHHVKKYFDQ-----VDISNGLDWSLDHKIFYYIDS-----------------LSYSVDAFDYDLQTGQISNRR  189 (297)
T ss_dssp             EEEECTTSCEEEEEEE-----ESBEEEEEECTTSCEEEEEEG-----------------GGTEEEEEEECTTTCCEEEEE
T ss_pred             EEEEECCCCEEEEeec-----cccccceEEcCCCCEEEEecC-----------------CCCcEEEEeccCCCCcccCcE
Confidence            88998667 5444332     34688999999995 899875                 3567888864  556542   


Q ss_pred             EEeC---CccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEc-CCC-CEEEEEec
Q 017371          213 LVAD---GFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLA-PDG-TFWIAIIK  284 (372)
Q Consensus       213 ~~~~---~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d-~~G-~lwva~~~  284 (372)
                      .+..   ....|.|++++++|+ +|++...+++|.+|++++.+..  ..+ ......|.++++. +++ .|||++..
T Consensus       190 ~~~~~~~~~~~p~g~~~d~~G~-lwva~~~~~~v~~~d~~tG~~~--~~i-~~p~~~~t~~~f~g~d~~~L~vt~~~  262 (297)
T 3g4e_A          190 SVYKLEKEEQIPDGMCIDAEGK-LWVACYNGGRVIRLDPVTGKRL--QTV-KLPVDKTTSCCFGGKNYSEMYVTCAR  262 (297)
T ss_dssp             EEEECCGGGCEEEEEEEBTTSC-EEEEEETTTEEEEECTTTCCEE--EEE-ECSSSBEEEEEEESGGGCEEEEEEBC
T ss_pred             EEEECCCCCCCCCeeEECCCCC-EEEEEcCCCEEEEEcCCCceEE--EEE-ECCCCCceEEEEeCCCCCEEEEEcCC
Confidence            2221   235689999999996 9999988889999998632211  111 1112357889997 665 69999975

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.56  E-value=4.5e-12  Score=114.19  Aligned_cols=233  Identities=10%  Similarity=0.051  Sum_probs=154.8

Q ss_pred             ceEecCCCCCCCccEEEcCCCcEEEEecCCeEEEEe-CCceEE-EEecC-CCcccCeEEcCCCCEEEEeCC-C-cEEEEc
Q 017371           70 FIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQ-DGTWVN-WKFID-SQTLVGLTSTKEGHLIICDNA-N-GLHKVS  144 (372)
Q Consensus        70 ~~~~~~g~~~~p~~i~~d~~G~l~v~~~~g~i~~~~-~g~~~~-~~~~~-~~p~~gl~~d~dG~l~v~~~~-~-gv~~~~  144 (372)
                      ++.+..+....+++++++++|++++ +.+++|+.++ +|+... +.... .... +..+.++|++++++.. . .++.++
T Consensus        28 ~w~~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~~G~~~W~~~~~~~~~~~-~~~~~~dG~~lv~~~~~~~~v~~vd  105 (276)
T 3no2_A           28 VWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITRDGRELWNIAAPAGCEMQ-TARILPDGNALVAWCGHPSTILEVN  105 (276)
T ss_dssp             EEEEECCTTCCCCEEEECTTSCEEE-ECBSEEEEECTTSCEEEEEECCTTCEEE-EEEECTTSCEEEEEESTTEEEEEEC
T ss_pred             EEEeCCCccCCCcCeEECCCCCEEE-eCCCCEEEECCCCCEEEEEcCCCCcccc-ccEECCCCCEEEEecCCCCEEEEEe
Confidence            3444433224789999999999999 4577899999 776432 22221 2344 7788899999999765 3 577888


Q ss_pred             CCC--cEEEeeecC-CcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCc
Q 017371          145 EDG--VENFLSYVN-GSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA  221 (372)
Q Consensus       145 ~~g--~~~l~~~~~-~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~  221 (372)
                      ++|  +..+..... ...+..+..++++++|++++++.                 .+++|+.+|++ |+..+....-..|
T Consensus       106 ~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~-----------------~~~~v~~~d~~-G~~~w~~~~~~~~  167 (276)
T 3no2_A          106 MKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLF-----------------ATSEVREIAPN-GQLLNSVKLSGTP  167 (276)
T ss_dssp             TTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEET-----------------TTTEEEEECTT-SCEEEEEECSSCC
T ss_pred             CCCCEEEEEeccCCCCcccccccCceECCCCCEEEEec-----------------CCCEEEEECCC-CCEEEEEECCCCc
Confidence            777  333322111 12234567888999999999865                 46899999998 7776655444567


Q ss_pred             ceEEEecCCCEEEEEeCCCCeEEEEEcc-CCCCcceeeeccCCC----CCCceeEEcCCCCEEEEEecCchhHHHHhhcc
Q 017371          222 NGVALSRDEDYVVVCESWKFRCRKYWLK-GERKGKLETFAENLP----GAPDNINLAPDGTFWIAIIKLDARRMKILNSS  296 (372)
Q Consensus       222 ~gi~~~~dg~~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~----g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~  296 (372)
                      .++...++|+ +++++..+++|+.++.+ |....+..  ....+    ..|.++.+.++|++||+++.....-       
T Consensus       168 ~~~~~~~~g~-~~v~~~~~~~v~~~d~~tG~~~w~~~--~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~-------  237 (276)
T 3no2_A          168 FSSAFLDNGD-CLVACGDAHCFVQLNLESNRIVRRVN--ANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDRE-------  237 (276)
T ss_dssp             CEEEECTTSC-EEEECBTTSEEEEECTTTCCEEEEEE--GGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTT-------
T ss_pred             cceeEcCCCC-EEEEeCCCCeEEEEeCcCCcEEEEec--CCCCCCccccccccceEcCCCCEEEEeccCcccc-------
Confidence            7888888887 77777777899999987 43222111  11111    2478999999999999997410000       


Q ss_pred             hhHHHHHHhcCccccccccCCCceEEEEECCCCcEEEEEECCCCCeeccceeeEE
Q 017371          297 KLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQ  351 (372)
Q Consensus       297 ~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~  351 (372)
                                       .+....+.+++++++|+++..|.+...  +..++.++.
T Consensus       238 -----------------~~~~~~~~~~~~~~~g~~~W~~~~~~~--~~~~~~~~~  273 (276)
T 3no2_A          238 -----------------AGKGKHPQLVEIDSEGKVVWQLNDKVK--FGMISTICP  273 (276)
T ss_dssp             -----------------GGGSCCCSEEEECTTSBEEEEECCTTT--SCCCCEEEE
T ss_pred             -----------------ccccCCceEEEECCCCCEEEEecCccc--ccceeeeee
Confidence                             000024579999999999999876443  444555543

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.56  E-value=3e-13  Score=123.46  Aligned_cols=179  Identities=13%  Similarity=0.149  Sum_probs=126.9

Q ss_pred             CCCccEEEcCCCcEEEEec-CCeEEEEe-CCceEEEEec-----CCCcccCeEEcCCCCEEEEeC---------------
Q 017371           79 NHPEDASMDKNGVIYTATR-DGWIKRLQ-DGTWVNWKFI-----DSQTLVGLTSTKEGHLIICDN---------------  136 (372)
Q Consensus        79 ~~p~~i~~d~~G~l~v~~~-~g~i~~~~-~g~~~~~~~~-----~~~p~~gl~~d~dG~l~v~~~---------------  136 (372)
                      ..|.++++|++|+||+++. +++|.+++ +|+++.+...     ...|. +++++++|++|+++.               
T Consensus        86 ~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~-~i~~d~dG~l~~td~~~g~~~~~~~~~~~~  164 (305)
T 3dr2_A           86 AFTNGNAVDAQQRLVHCEHGRRAITRSDADGQAHLLVGRYAGKRLNSPN-DLIVARDGAIWFTDPPFGLRKPSQGCPADP  164 (305)
T ss_dssp             SCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECEETTEECSCCC-CEEECTTSCEEEECCSGGGSCGGGSCCCCC
T ss_pred             CccceeeECCCCCEEEEECCCCEEEEECCCCCEEEEEeccCCCccCCCC-CEEECCCCCEEEeCcCCCcccccccccccc
Confidence            4688999999999999984 57899999 8877665432     24577 899999999999752               


Q ss_pred             ---CCcEEEEc-CCC-cEEEeeecCCcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCe
Q 017371          137 ---ANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI  210 (372)
Q Consensus       137 ---~~gv~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~  210 (372)
                         ..+|++++ .+| .+.+. .     +..++++++++||+ ||+++....            ....++|++++.+++.
T Consensus       165 ~~~~~~v~~~d~~~g~~~~~~-~-----~~~p~gl~~spdg~~lyv~~~~~~------------~~~~~~i~~~~~~~~~  226 (305)
T 3dr2_A          165 ELAHHSVYRLPPDGSPLQRMA-D-----LDHPNGLAFSPDEQTLYVSQTPEQ------------GHGSVEITAFAWRDGA  226 (305)
T ss_dssp             SSSCEEEEEECSSSCCCEEEE-E-----ESSEEEEEECTTSSEEEEEECCC---------------CCCEEEEEEEETTE
T ss_pred             ccCCCeEEEEcCCCCcEEEEe-c-----CCCCcceEEcCCCCEEEEEecCCc------------CCCCCEEEEEEecCCC
Confidence               24699999 467 66553 2     34688999999996 999875310            0113679888876443


Q ss_pred             E---EEEeC-CccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCC-CEEEEEec
Q 017371          211 T---TLVAD-GFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDG-TFWIAIIK  284 (372)
Q Consensus       211 ~---~~~~~-~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G-~lwva~~~  284 (372)
                      .   +.+.. ....|.|++++++|+ +|++.  .++|++|+.+|....   .+.  .+..|.+++++++| .||+++..
T Consensus       227 l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~--~~gv~~~~~~g~~~~---~~~--~~~~~~~~~f~~d~~~L~it~~~  297 (305)
T 3dr2_A          227 LHDRRHFASVPDGLPDGFCVDRGGW-LWSSS--GTGVCVFDSDGQLLG---HIP--TPGTASNCTFDQAQQRLFITGGP  297 (305)
T ss_dssp             EEEEEEEECCSSSCCCSEEECTTSC-EEECC--SSEEEEECTTSCEEE---EEE--CSSCCCEEEECTTSCEEEEEETT
T ss_pred             ccCCeEEEECCCCCCCeEEECCCCC-EEEec--CCcEEEECCCCCEEE---EEE--CCCceeEEEEeCCCCEEEEEcCC
Confidence            2   12221 235688999999998 88886  457999998664222   222  22248899998877 69998865

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=99.55  E-value=5e-13  Score=137.25  Aligned_cols=227  Identities=13%  Similarity=0.157  Sum_probs=144.0

Q ss_pred             CccEEEcCCCcEEEEecCCeEEEEe--CC---ceEEEEec-------CCCcccCeEEcCCCCEEEEeCCCcEEEEc-CCC
Q 017371           81 PEDASMDKNGVIYTATRDGWIKRLQ--DG---TWVNWKFI-------DSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG  147 (372)
Q Consensus        81 p~~i~~d~~G~l~v~~~~g~i~~~~--~g---~~~~~~~~-------~~~p~~gl~~d~dG~l~v~~~~~gv~~~~-~~g  147 (372)
                      ..+++.|++|.||+|+.+ .+++++  .+   .++.+...       ..... .|..|++|+||++.. .||.+++ .++
T Consensus       326 v~~i~~D~~g~lWiGt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~-~i~~d~~g~lWigt~-~GL~~~~~~~~  402 (758)
T 3ott_A          326 FYSLFRDSKGFYWFGGAN-GLIRFTDPAGERHDAIWYRMGDKTYPLSHNRIR-HIYEDKEQQLWIATD-GSINRYDYATR  402 (758)
T ss_dssp             EEEEEECTTCCEEEEETT-EEEEESCTTSSCCCCEEECTTCSSSCCSCSCEE-EEEECTTSCEEEEET-TEEEEEETTTT
T ss_pred             EEEEEEcCCCCEEEeeCC-cceeecccccccceeEEeccCCcCCCCCCCceE-EEEECCCCCEEEEeC-CcHhhcCcCCC
Confidence            356889999999999954 699998  33   23333211       12345 788999999999984 5999999 556


Q ss_pred             -cEEEeeecC-C-cccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCC------CeEE---EE-
Q 017371          148 -VENFLSYVN-G-SKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS------NITT---LV-  214 (372)
Q Consensus       148 -~~~l~~~~~-~-~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t------~~~~---~~-  214 (372)
                       ++.+..... + .....+..+..|++|+||++..                  .++|+++|+++      +.+.   .+ 
T Consensus       403 ~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT~------------------~~Gl~~~~~~~~~~~~~~~~~~~~~~~  464 (758)
T 3ott_A          403 QFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWISTC------------------LGGIFVVDKHKLMQSTSGQYIAEQNYS  464 (758)
T ss_dssp             EEEEEEEECCC--CBSSSEEEEEECTTSEEEEEES------------------SSCEEEEEHHHHHHCCSSEEECSEEEC
T ss_pred             cEEEeecCCCcCCCCCceEEEEEEcCCCCEEEEEC------------------CCceEEEccccccccCCcceecccccc
Confidence             555432111 1 1223466789999999999743                  35799998652      1221   11 


Q ss_pred             -eCCccC--cceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeecc-CCC--CCCceeEEcCCCCEEEEEecCchh
Q 017371          215 -ADGFYF--ANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAE-NLP--GAPDNINLAPDGTFWIAIIKLDAR  288 (372)
Q Consensus       215 -~~~~~~--~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~-~~~--g~p~~i~~d~~G~lwva~~~~~~~  288 (372)
                       ..++..  ...+..+++|+ +|+......+|.+|+....   ....+.. .+.  ..+..+..|++|+||+++..    
T Consensus       465 ~~~~l~~~~i~~i~~d~~g~-lWi~~~t~~Gl~~~d~~~~---~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt~~----  536 (758)
T 3ott_A          465 VHNGLSGMFINQIIPDNEGN-VWVLLYNNKGIDKINPRTR---EVTKLFADELTGEKSPNYLLCDEDGLLWVGFHG----  536 (758)
T ss_dssp             GGGTCSCSCEEEEEECTTSC-EEEEETTCSSEEEEETTTT---EEEEECTTTSCGGGCEEEEEECTTSCEEEEETT----
T ss_pred             cccccccceeeeEEEcCCCC-EEEEccCCCCcEEEeCCCC---ceEEecCCCcCCCcccceEEECCCCCEEEEecC----
Confidence             112221  23566777776 8883333467999997543   2323321 111  23567889999999999854    


Q ss_pred             HHHHhhcchhHHHHHHhcCccccccccCCCceEEEEECCCCcEEEEEECCCCCeeccceeeEEECCEEEEEeCCCCeEEE
Q 017371          289 RMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGK  368 (372)
Q Consensus       289 ~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~igs~~~~~i~~  368 (372)
                                                      ++.+++++.+....+. .+|...+.+.++.+++|+||+++.  +.|.+
T Consensus       537 --------------------------------Gl~~~~~~~~~~~~~~-~~gl~~~~i~~i~~~~g~lWi~t~--~Gl~~  581 (758)
T 3ott_A          537 --------------------------------GVMRINPKDESQQSIS-FGSFSNNEILSMTCVKNSIWVSTT--NGLWI  581 (758)
T ss_dssp             --------------------------------EEEEECC--CCCCBCC-CCC---CCEEEEEEETTEEEEEES--SCEEE
T ss_pred             --------------------------------ceEEEecCCCceEEec-ccCCCccceEEEEECCCCEEEECC--CCeEE
Confidence                                            7999998765554443 235444567888888899999994  55777


Q ss_pred             EeC
Q 017371          369 VQL  371 (372)
Q Consensus       369 ~~~  371 (372)
                      ++.
T Consensus       582 ~~~  584 (758)
T 3ott_A          582 IDR  584 (758)
T ss_dssp             EET
T ss_pred             EcC
Confidence            764

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=99.54  E-value=9.5e-13  Score=135.18  Aligned_cols=224  Identities=15%  Similarity=0.195  Sum_probs=143.8

Q ss_pred             CccEEEcCCCcEEEEecCCeEEEEe--CCceEEEEec-------CCCcccCeEEcCCCCEEEEeCCCcEEEEcCCC----
Q 017371           81 PEDASMDKNGVIYTATRDGWIKRLQ--DGTWVNWKFI-------DSQTLVGLTSTKEGHLIICDNANGLHKVSEDG----  147 (372)
Q Consensus        81 p~~i~~d~~G~l~v~~~~g~i~~~~--~g~~~~~~~~-------~~~p~~gl~~d~dG~l~v~~~~~gv~~~~~~g----  147 (372)
                      ..+|+.|++|.||+|+ ++.|.+++  +++++.+...       ..... .+..|++|+|||+....||++++++.    
T Consensus       375 v~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~  452 (758)
T 3ott_A          375 IRHIYEDKEQQLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTY-YIFEDTAGQLWISTCLGGIFVVDKHKLMQS  452 (758)
T ss_dssp             EEEEEECTTSCEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEE-EEEECTTSEEEEEESSSCEEEEEHHHHHHC
T ss_pred             eEEEEECCCCCEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEE-EEEEcCCCCEEEEECCCceEEEcccccccc
Confidence            4678999999999999 45799999  5666665421       12345 78889999999998777999998321    


Q ss_pred             -cEEEe-----eecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCC-c--
Q 017371          148 -VENFL-----SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-F--  218 (372)
Q Consensus       148 -~~~l~-----~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~-~--  218 (372)
                       ...+.     ....+.....+..|..|++|+||+...                 ..++|+++|+++++++.+... +  
T Consensus       453 ~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~-----------------t~~Gl~~~d~~~~~~~~~~~~~~~~  515 (758)
T 3ott_A          453 TSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLY-----------------NNKGIDKINPRTREVTKLFADELTG  515 (758)
T ss_dssp             CSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEET-----------------TCSSEEEEETTTTEEEEECTTTSCG
T ss_pred             CCcceecccccccccccccceeeeEEEcCCCCEEEEcc-----------------CCCCcEEEeCCCCceEEecCCCcCC
Confidence             01111     111222223567899999999999211                 235699999998888776422 1  


Q ss_pred             -cCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCC-CCCceeEEcCCCCEEEEEecCchhHHHHhhcc
Q 017371          219 -YFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLP-GAPDNINLAPDGTFWIAIIKLDARRMKILNSS  296 (372)
Q Consensus       219 -~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~-g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~  296 (372)
                       ..++.+..+.+|+ +|++..  ..|.+|+.++.+.....  .+.++ ....++..| +|+||+++..            
T Consensus       516 ~~~~~~i~~d~~g~-lWigt~--~Gl~~~~~~~~~~~~~~--~~gl~~~~i~~i~~~-~g~lWi~t~~------------  577 (758)
T 3ott_A          516 EKSPNYLLCDEDGL-LWVGFH--GGVMRINPKDESQQSIS--FGSFSNNEILSMTCV-KNSIWVSTTN------------  577 (758)
T ss_dssp             GGCEEEEEECTTSC-EEEEET--TEEEEECC--CCCCBCC--CCC---CCEEEEEEE-TTEEEEEESS------------
T ss_pred             CcccceEEECCCCC-EEEEec--CceEEEecCCCceEEec--ccCCCccceEEEEEC-CCCEEEECCC------------
Confidence             2345677777776 888753  47999987654322211  01121 123446665 8999999965            


Q ss_pred             hhHHHHHHhcCccccccccCCCceEEEEECCCCcEEEEEECCCCCeeccceeeEEE-CCEEEEEeCCCCeEEEEe
Q 017371          297 KLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQ  370 (372)
Q Consensus       297 ~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~L~igs~~~~~i~~~~  370 (372)
                                              ++.+++++...+..+..++.. +.  ..+... +|+||+|+..  .+.+++
T Consensus       578 ------------------------Gl~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~G~l~fG~~~--Gl~~f~  623 (758)
T 3ott_A          578 ------------------------GLWIIDRKTMDARQQNMTNKR-FT--SLLFDPKEDCVYLGGAD--GFGISH  623 (758)
T ss_dssp             ------------------------CEEEEETTTCCEEEC--CCCC-CS--EEEEETTTTEEEEECBS--EEEEEE
T ss_pred             ------------------------CeEEEcCCCceeEEecCCCCc-ee--eeEEECCCCcEEEecCC--ceEEEC
Confidence                                    689999887666666555432 22  233333 7999999965  455554

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=99.53  E-value=2.4e-12  Score=120.17  Aligned_cols=165  Identities=9%  Similarity=0.014  Sum_probs=109.2

Q ss_pred             ceEEEEecCCCcccCeEEcCCCCEEEEeCCCcEEEEcCCCcEEEee-ecCCcccccccceEEccC----CcEEEEeCCCC
Q 017371          108 TWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDGVENFLS-YVNGSKLRFANDVVEASD----GSLYFTVSSSK  182 (372)
Q Consensus       108 ~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~~~g~~~l~~-~~~~~~~~~~~~l~~d~d----G~i~vtd~~~~  182 (372)
                      +++.+......|. +|+++++|+|||++....|++++.+|.+.+.. .........+.+|+++++    |.||+++... 
T Consensus        20 ~~~~va~~l~~P~-~ia~~pdG~l~V~e~~g~I~~~d~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~-   97 (354)
T 3a9g_A           20 KISEVASDLEVPW-SIAPLGGGRYLVTERPGRLVLISPSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYF-   97 (354)
T ss_dssp             EEEEEECSCSCEE-EEEEEETTEEEEEETTTEEEEECSSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEE-
T ss_pred             EEEEEeCCCCCCe-EEEEcCCCeEEEEeCCCEEEEEeCCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEecc-
Confidence            3445555667899 99999999999999876788888656422221 111112346889999996    8999986410 


Q ss_pred             CCCcccccccccccCCCeEEEEeCCCC-----eEEEEeC-----CccCcceEEEecCCCEEEEEeC-------------C
Q 017371          183 YLPHEYCLDILEGKPHGQLLKYDPSSN-----ITTLVAD-----GFYFANGVALSRDEDYVVVCES-------------W  239 (372)
Q Consensus       183 ~~~~~~~~~~~~~~~~g~v~~~d~~t~-----~~~~~~~-----~~~~~~gi~~~~dg~~l~v~~~-------------~  239 (372)
                       .        .......+|++++.+.+     +.+++.+     ..+.++++++++||. ||++..             .
T Consensus        98 -~--------~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt~G~~~~~~~~~d~~~~  167 (354)
T 3a9g_A           98 -A--------EGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYITTGDAADPRLAQDLSSL  167 (354)
T ss_dssp             -C--------GGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEECCCTTCGGGGTCTTCC
T ss_pred             -C--------CCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEEECCCCCCccccCCCCC
Confidence             0        00011267999987644     2333322     245688999999996 999853             1


Q ss_pred             CCeEEEEEccCCCC-----cceeeeccCCCCCCceeEEcC-CCCEEEEEecC
Q 017371          240 KFRCRKYWLKGERK-----GKLETFAENLPGAPDNINLAP-DGTFWIAIIKL  285 (372)
Q Consensus       240 ~~~i~~~~~~g~~~-----~~~~~~~~~~~g~p~~i~~d~-~G~lwva~~~~  285 (372)
                      ..+|+|++.+|...     ...+.+...+ ..|.+|++|+ +|+||+++...
T Consensus       168 ~G~I~ri~~dG~~p~~npf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~  218 (354)
T 3a9g_A          168 AGKILRVDEEGRPPADNPFPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGP  218 (354)
T ss_dssp             SSEEEEECTTSCCCTTSSSTTCCEEEECC-SCCCEEEECTTTCCEEEEECCS
T ss_pred             CeEEEEEcCCCCCCCCCCCCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCC
Confidence            35899999886410     0234444333 3589999999 89999999873

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.53  E-value=9e-12  Score=114.12  Aligned_cols=224  Identities=13%  Similarity=0.093  Sum_probs=151.6

Q ss_pred             CCCcEEEEe-cCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCC-EEEEeCC-CcEEEEc-CCC-c-EEEeeecCCcc
Q 017371           88 KNGVIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA-NGLHKVS-EDG-V-ENFLSYVNGSK  159 (372)
Q Consensus        88 ~~G~l~v~~-~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~-l~v~~~~-~gv~~~~-~~g-~-~~l~~~~~~~~  159 (372)
                      ..+.+|+++ .++.|..++  +++..........+. +++++++|+ ||++... ..++.++ .++ . ...... .   
T Consensus         8 ~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~---   82 (331)
T 3u4y_A            8 TSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE-G---   82 (331)
T ss_dssp             CCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE-C---
T ss_pred             CCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc-C---
Confidence            355788887 678999999  566654444445666 899999997 8888764 5688898 556 4 322221 1   


Q ss_pred             cccccc-eEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeC
Q 017371          160 LRFAND-VVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES  238 (372)
Q Consensus       160 ~~~~~~-l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~  238 (372)
                       ..+.. ++++++|+.+++...              ....+.|+.+|.++++..........|++++++|||+++|+++.
T Consensus        83 -~~~~~~~~~s~dg~~l~~~~~--------------~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~  147 (331)
T 3u4y_A           83 -QSSMADVDITPDDQFAVTVTG--------------LNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDR  147 (331)
T ss_dssp             -SSCCCCEEECTTSSEEEECCC--------------SSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEE
T ss_pred             -CCCccceEECCCCCEEEEecC--------------CCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEec
Confidence             23456 999999975444221              00122899999988887665555567899999999999999988


Q ss_pred             CCCe-EEEEEccCCC-Ccce-eeeccCCCCCCceeEEcCCCC-EEEEEecCchhHHHHhhcchhHHHHHHhcCccccccc
Q 017371          239 WKFR-CRKYWLKGER-KGKL-ETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFI  314 (372)
Q Consensus       239 ~~~~-i~~~~~~g~~-~~~~-~~~~~~~~g~p~~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~  314 (372)
                      ..+. |..|+++... .... .... .....|.+++++++|+ +|++...                              
T Consensus       148 ~~~~~i~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~------------------------------  196 (331)
T 3u4y_A          148 SSANTVRRFKIDADGVLFDTGQEFI-SGGTRPFNITFTPDGNFAFVANLI------------------------------  196 (331)
T ss_dssp             TTTTEEEEEEECTTCCEEEEEEEEE-CSSSSEEEEEECTTSSEEEEEETT------------------------------
T ss_pred             CCCceEEEEEECCCCcEeecCCccc-cCCCCccceEECCCCCEEEEEeCC------------------------------
Confidence            7677 8888876421 1111 1111 1223588999999997 8888865                              


Q ss_pred             cCCCceEEEEECC-CCcE---EEEEECCCCCeeccceeeEEE-C-CEEEEEeCCCCeEEEEeC
Q 017371          315 TLGGGAHLIHVAE-DGTI---IRNLVDPTGQLMSFVTSGLQV-D-NHLYVISLTSNFIGKVQL  371 (372)
Q Consensus       315 ~~~~~~~v~~~~~-~g~~---~~~~~~~~g~~~~~~t~~~~~-~-g~L~igs~~~~~i~~~~~  371 (372)
                          .+.|..++. +++.   +..+...     ..+..+... + ..||+++...+.|.++++
T Consensus       197 ----~~~v~v~d~~~~~~~~~~~~~~~~-----~~~~~~~~spdg~~l~v~~~~~~~i~~~d~  250 (331)
T 3u4y_A          197 ----GNSIGILETQNPENITLLNAVGTN-----NLPGTIVVSRDGSTVYVLTESTVDVFNFNQ  250 (331)
T ss_dssp             ----TTEEEEEECSSTTSCEEEEEEECS-----SCCCCEEECTTSSEEEEECSSEEEEEEEET
T ss_pred             ----CCeEEEEECCCCcccceeeeccCC-----CCCceEEECCCCCEEEEEEcCCCEEEEEEC
Confidence                356777775 4676   6665532     134556665 3 559999888888888875

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.51  E-value=2.7e-12  Score=117.64  Aligned_cols=216  Identities=16%  Similarity=0.184  Sum_probs=139.7

Q ss_pred             ccEEEcCCCcEEEEecCCeEEEEe-CCceEEEEecCCCcccCeEEcCCCCEEEEeCCCcEEEEcCCCcEEEeeecCCccc
Q 017371           82 EDASMDKNGVIYTATRDGWIKRLQ-DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDGVENFLSYVNGSKL  160 (372)
Q Consensus        82 ~~i~~d~~G~l~v~~~~g~i~~~~-~g~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~~~g~~~l~~~~~~~~~  160 (372)
                      .+++++++|.||+++.+  |++++ +|+................+. +|+||++....++++++.+|..........   
T Consensus        63 ~~~~~~~~g~l~v~t~~--l~~~d~~g~~~~~~~~~~~~~~~~~~~-~~~l~v~t~~~~l~~~d~~g~~~~~~~~~~---  136 (330)
T 3hxj_A           63 CRPSIGKDGTIYFGSDK--VYAINPDGTEKWRFDTKKAIVSDFTIF-EDILYVTSMDGHLYAINTDGTEKWRFKTKK---  136 (330)
T ss_dssp             ECCEETTTTEECCSSCE--EEEECCCGGGGGGSCC-----CCEEEE-TTEEEEECTTSEEEEECTTSCEEEEEECSS---
T ss_pred             cceEEecCCcEEEecCc--EEEECCCCcEEEEEECCCCcccCceEE-CCEEEEEecCCEEEEEcCCCCEEEEEcCCC---
Confidence            46788889999999755  99998 554321111111112144454 889999987778999994472222112121   


Q ss_pred             ccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEe-CCccCcceEEEecCCCEEEEEeCC
Q 017371          161 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDEDYVVVCESW  239 (372)
Q Consensus       161 ~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~-~~~~~~~gi~~~~dg~~l~v~~~~  239 (372)
                      .....++++++|+||++.                  ..++|+++|++ ++..... ........+.+++++. +|++.  
T Consensus       137 ~~~~~~~~~~~g~l~vgt------------------~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~-l~v~t--  194 (330)
T 3hxj_A          137 AIYATPIVSEDGTIYVGS------------------NDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGT-IYFGS--  194 (330)
T ss_dssp             CCCSCCEECTTSCEEEEC------------------TTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCC-EEEES--
T ss_pred             ceeeeeEEcCCCEEEEEc------------------CCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCE-EEEEe--
Confidence            234567888999999963                  34789999998 6554322 2223345677777776 88876  


Q ss_pred             CCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCc
Q 017371          240 KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGG  319 (372)
Q Consensus       240 ~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~  319 (372)
                       ..|++++.++...   ..+. ........+++|++|++|+++..                                   
T Consensus       195 -~~l~~~d~~g~~~---~~~~-~~~~~~~~~~~~~~g~l~v~t~~-----------------------------------  234 (330)
T 3hxj_A          195 -DKVYAINPDGTEK---WNFY-AGYWTVTRPAISEDGTIYVTSLD-----------------------------------  234 (330)
T ss_dssp             -SSEEEECTTSCEE---EEEC-CSSCCCSCCEECTTSCEEEEETT-----------------------------------
T ss_pred             -CEEEEECCCCcEE---EEEc-cCCcceeceEECCCCeEEEEcCC-----------------------------------
Confidence             6799998443211   1111 12234677899999999999874                                   


Q ss_pred             eEEEEECCCCcEEEEEECCCCCeeccceeeEEE-CCEEEEEeCCCCeEEEEe
Q 017371          320 AHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQ  370 (372)
Q Consensus       320 ~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~L~igs~~~~~i~~~~  370 (372)
                      +.+++++++|+.+..+....+.    .+.+..+ +++||+++.. ..|.+++
T Consensus       235 ~gl~~~~~~g~~~~~~~~~~~~----~~~~~~~~~g~l~v~t~~-ggl~~~d  281 (330)
T 3hxj_A          235 GHLYAINPDGTEKWRFKTGKRI----ESSPVIGNTDTIYFGSYD-GHLYAIN  281 (330)
T ss_dssp             TEEEEECTTSCEEEEEECSSCC----CSCCEECTTSCEEEECTT-CEEEEEC
T ss_pred             CeEEEECCCCCEeEEeeCCCCc----cccceEcCCCeEEEecCC-CCEEEEC
Confidence            4899999999998887765432    3345555 7999999964 4666665

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.50  E-value=2.2e-11  Score=113.89  Aligned_cols=245  Identities=14%  Similarity=0.084  Sum_probs=146.1

Q ss_pred             CCCCccEEEcCCCc-EEEEecCCeEEEEe---CCceEEEEe--cCCCcccCeEEcCCCC-EEE--Ee-------------
Q 017371           78 VNHPEDASMDKNGV-IYTATRDGWIKRLQ---DGTWVNWKF--IDSQTLVGLTSTKEGH-LII--CD-------------  135 (372)
Q Consensus        78 ~~~p~~i~~d~~G~-l~v~~~~g~i~~~~---~g~~~~~~~--~~~~p~~gl~~d~dG~-l~v--~~-------------  135 (372)
                      ...|..++++++|. ||+++.+ .|..|+   +|+......  ..+.|. ++++++||+ ||+  ++             
T Consensus        39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~-~~~~spdg~~l~~~~~~~~~~~~~~~~~~~  116 (365)
T 1jof_A           39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPR-ANDADTNTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGG-GGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCc-cEEECCCCCEEEEEEecCCcceeccceeec
Confidence            45799999999996 8888766 788777   566543322  224578 899999998 243  32             


Q ss_pred             CCCcEEEEc--CCC-cEEEeeecCCcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCC-CCe
Q 017371          136 NANGLHKVS--EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS-SNI  210 (372)
Q Consensus       136 ~~~gv~~~~--~~g-~~~l~~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~-t~~  210 (372)
                      ....+..++  .+| ...............++++++++||+ +|+++.                 ..+.|+.||.+ +++
T Consensus       117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~-----------------~~~~v~~~~~~~~g~  179 (365)
T 1jof_A          117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADL-----------------TANKLWTHRKLASGE  179 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET-----------------TTTEEEEEEECTTSC
T ss_pred             CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcC-----------------CCCEEEEEEECCCCC
Confidence            222344444  456 32211111101124678899999996 777654                 34678888876 676


Q ss_pred             EEEEe--C---CccCcceEEEecCCCEEEEEeCCCCeEEEEEccC--CCCcc-eeeeccCCC----C---------CCce
Q 017371          211 TTLVA--D---GFYFANGVALSRDEDYVVVCESWKFRCRKYWLKG--ERKGK-LETFAENLP----G---------APDN  269 (372)
Q Consensus       211 ~~~~~--~---~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g--~~~~~-~~~~~~~~~----g---------~p~~  269 (372)
                      .+.+.  .   ....|.+++|+|||+++|+++...+.|..|+.+.  .+... ...+. ..+    +         .|.+
T Consensus       180 ~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~  258 (365)
T 1jof_A          180 VELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFP-LIPPGIPDRDPETGKGLYRAD  258 (365)
T ss_dssp             EEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEE-SSCTTCCCBCTTTSSBSEEEE
T ss_pred             EEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEE-cCCCCcCCccccccccccccc
Confidence            64332  1   1356888999999999999987777888876652  22110 11111 111    1         3678


Q ss_pred             eE-EcCCCC-EEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEECCCCcEEEE---EECCCCCeec
Q 017371          270 IN-LAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRN---LVDPTGQLMS  344 (372)
Q Consensus       270 i~-~d~~G~-lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~g~~~~~---~~~~~g~~~~  344 (372)
                      ++ +++||+ ||+++......                           ....-.++.++.+|++...   .......  .
T Consensus       259 i~~~spdG~~l~v~~~~~~~~---------------------------~~~~i~v~~~~~~g~~~~~~~~~~~~~~~--~  309 (365)
T 1jof_A          259 VCALTFSGKYMFASSRANKFE---------------------------LQGYIAGFKLRDCGSIEKQLFLSPTPTSG--G  309 (365)
T ss_dssp             EEEECTTSSEEEEEEEESSTT---------------------------SCCEEEEEEECTTSCEEEEEEEEECSSCC--T
T ss_pred             EEEECCCCCEEEEECCCCCCC---------------------------CCCeEEEEEECCCCCEEEeeeeeecCCCC--c
Confidence            99 999995 78777651000                           0001245555556776542   2222111  0


Q ss_pred             cceeeEE---ECCEEEEEeCCCCeEEEEeC
Q 017371          345 FVTSGLQ---VDNHLYVISLTSNFIGKVQL  371 (372)
Q Consensus       345 ~~t~~~~---~~g~L~igs~~~~~i~~~~~  371 (372)
                      ..-.+..   ++++||+++..++.|.++++
T Consensus       310 ~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~  339 (365)
T 1jof_A          310 HSNAVSPCPWSDEWMAITDDQEGWLEIYRW  339 (365)
T ss_dssp             TCCCEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred             ccceecCCCcCCCEEEEEEcCCCeEEEEEE
Confidence            1112334   46789999988888888765

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.50  E-value=9.5e-12  Score=115.02  Aligned_cols=187  Identities=16%  Similarity=0.164  Sum_probs=122.7

Q ss_pred             CCCCccEEEcCCCc-EEEEe-cCCeEEEEe---CCceEEEEe---cC---------CCcccCeEEcCCCCEEEEeCCC-c
Q 017371           78 VNHPEDASMDKNGV-IYTAT-RDGWIKRLQ---DGTWVNWKF---ID---------SQTLVGLTSTKEGHLIICDNAN-G  139 (372)
Q Consensus        78 ~~~p~~i~~d~~G~-l~v~~-~~g~i~~~~---~g~~~~~~~---~~---------~~p~~gl~~d~dG~l~v~~~~~-g  139 (372)
                      ...|.+++++++|. ||+++ .++.|..|+   +|..+.+..   ..         ..+. ++++++||++|+++... .
T Consensus        85 ~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~spdg~l~v~~~~~~~  163 (347)
T 3hfq_A           85 GTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIH-YTDLTPDNRLAVIDLGSDK  163 (347)
T ss_dssp             SCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEE-EEEECTTSCEEEEETTTTE
T ss_pred             CCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCce-EEEECCCCcEEEEeCCCCE
Confidence            35799999999996 88888 678888887   455443322   11         1355 79999999999988654 4


Q ss_pred             EEEEc-C-CC-cEEEeeecCCcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeE--EEEeCCCCeEEE
Q 017371          140 LHKVS-E-DG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQL--LKYDPSSNITTL  213 (372)
Q Consensus       140 v~~~~-~-~g-~~~l~~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v--~~~d~~t~~~~~  213 (372)
                      +..++ . +| ...+... .......++++++++||+ +|+++.                 ..+.+  +.++..+++.+.
T Consensus       164 v~~~~~~~~g~~~~~~~~-~~~~g~~p~~~~~spdg~~l~v~~~-----------------~~~~v~v~~~~~~~g~~~~  225 (347)
T 3hfq_A          164 VYVYNVSDAGQLSEQSVL-TMEAGFGPRHLVFSPDGQYAFLAGE-----------------LSSQIASLKYDTQTGAFTQ  225 (347)
T ss_dssp             EEEEEECTTSCEEEEEEE-ECCTTCCEEEEEECTTSSEEEEEET-----------------TTTEEEEEEEETTTTEEEE
T ss_pred             EEEEEECCCCcEEEeeeE-EcCCCCCCceEEECCCCCEEEEEeC-----------------CCCEEEEEEecCCCCceEE
Confidence            77777 4 56 4433221 111123577899999997 888754                 23444  445554566544


Q ss_pred             EeC--C-------ccCcceEEEecCCCEEEEEeCCCCeEEEEEccCC-CCcceeeeccCCCCCCceeEEcCCCC-EEEEE
Q 017371          214 VAD--G-------FYFANGVALSRDEDYVVVCESWKFRCRKYWLKGE-RKGKLETFAENLPGAPDNINLAPDGT-FWIAI  282 (372)
Q Consensus       214 ~~~--~-------~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~-~~~~~~~~~~~~~g~p~~i~~d~~G~-lwva~  282 (372)
                      +..  .       ...+.+++++|||++||+++...+.|..|+++.. .......+. .....|.++++++||+ ||++.
T Consensus       226 ~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~  304 (347)
T 3hfq_A          226 LGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQIS-TEGDFPRDFDLDPTEAFVVVVN  304 (347)
T ss_dssp             EEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEE-CSSSCCCEEEECTTSSEEEEEE
T ss_pred             eeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEe-cCCCCcCeEEECCCCCEEEEEE
Confidence            321  1       1336679999999999999988888999988632 111122221 2233589999999997 77777


Q ss_pred             ec
Q 017371          283 IK  284 (372)
Q Consensus       283 ~~  284 (372)
                      ..
T Consensus       305 ~~  306 (347)
T 3hfq_A          305 QN  306 (347)
T ss_dssp             TT
T ss_pred             cC
Confidence            54

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.50  E-value=3.9e-11  Score=112.48  Aligned_cols=230  Identities=14%  Similarity=0.165  Sum_probs=162.1

Q ss_pred             CCCccEEEcCCCc-EEEEe-cCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCC-EEEEeCC-CcEEEEc-CCC-cEE
Q 017371           79 NHPEDASMDKNGV-IYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA-NGLHKVS-EDG-VEN  150 (372)
Q Consensus        79 ~~p~~i~~d~~G~-l~v~~-~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~-l~v~~~~-~gv~~~~-~~g-~~~  150 (372)
                      ..+.+++++++|. ||++. .++.|..++  +++..........+. +++++++|+ ||++... ..|..++ .++ ...
T Consensus        32 ~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~-~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~  110 (391)
T 1l0q_A           32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQ-GVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG  110 (391)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEE-EEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCcc-ceEECCCCCEEEEEECCCCEEEEEECCCCeEEE
Confidence            3688999999995 66665 789999999  666555444455777 999999997 6777654 5688888 556 222


Q ss_pred             EeeecCCcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecC
Q 017371          151 FLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRD  229 (372)
Q Consensus       151 l~~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~d  229 (372)
                      .... .    ..+..++++++|+ +|++..                 ..+.|+.+|..+++..........+..+++++|
T Consensus       111 ~~~~-~----~~~~~~~~s~dg~~l~~~~~-----------------~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~d  168 (391)
T 1l0q_A          111 TVKT-G----KSPLGLALSPDGKKLYVTNN-----------------GDKTVSVINTVTKAVINTVSVGRSPKGIAVTPD  168 (391)
T ss_dssp             EEEC-S----SSEEEEEECTTSSEEEEEET-----------------TTTEEEEEETTTTEEEEEEECCSSEEEEEECTT
T ss_pred             EEeC-C----CCcceEEECCCCCEEEEEeC-----------------CCCEEEEEECCCCcEEEEEecCCCcceEEECCC
Confidence            2111 1    2467899999996 667643                 467899999988887666655567789999999


Q ss_pred             CCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCC-EEEEEecCchhHHHHhhcchhHHHHHHhcCc
Q 017371          230 EDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPK  308 (372)
Q Consensus       230 g~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~  308 (372)
                      ++.+|++...++.|..+++.+.+.  ...+.  ....+.+++++++|+ +|++....                       
T Consensus       169 g~~l~~~~~~~~~v~~~d~~~~~~--~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~-----------------------  221 (391)
T 1l0q_A          169 GTKVYVANFDSMSISVIDTVTNSV--IDTVK--VEAAPSGIAVNPEGTKAYVTNVDK-----------------------  221 (391)
T ss_dssp             SSEEEEEETTTTEEEEEETTTTEE--EEEEE--CSSEEEEEEECTTSSEEEEEEECS-----------------------
T ss_pred             CCEEEEEeCCCCEEEEEECCCCeE--EEEEe--cCCCccceEECCCCCEEEEEecCc-----------------------
Confidence            999999988888999999865421  11221  233577899999995 66666410                       


Q ss_pred             cccccccCCCceEEEEECC-CCcEEEEEECCCCCeeccceeeEEE--CCEEEEEeCCCCeEEEEeCC
Q 017371          309 LFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQV--DNHLYVISLTSNFIGKVQLS  372 (372)
Q Consensus       309 ~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~--~g~L~igs~~~~~i~~~~~~  372 (372)
                               ..+.|..+|. +++.+..+....     .+.++...  +..||++....+.|.+++++
T Consensus       222 ---------~~~~v~~~d~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~  274 (391)
T 1l0q_A          222 ---------YFNTVSMIDTGTNKITARIPVGP-----DPAGIAVTPDGKKVYVALSFXNTVSVIDTA  274 (391)
T ss_dssp             ---------SCCEEEEEETTTTEEEEEEECCS-----SEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             ---------CCCcEEEEECCCCeEEEEEecCC-----CccEEEEccCCCEEEEEcCCCCEEEEEECC
Confidence                     1457888885 467777665432     24556655  35788998888889888763

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.48  E-value=1.7e-12  Score=120.68  Aligned_cols=185  Identities=12%  Similarity=0.147  Sum_probs=128.5

Q ss_pred             CCCCCCccEEEcCCCcEEEEec------CCeEEEEe--CCc-eEEEEec------CCCcccCeEEcC-CCCEEEEeC---
Q 017371           76 GSVNHPEDASMDKNGVIYTATR------DGWIKRLQ--DGT-WVNWKFI------DSQTLVGLTSTK-EGHLIICDN---  136 (372)
Q Consensus        76 g~~~~p~~i~~d~~G~l~v~~~------~g~i~~~~--~g~-~~~~~~~------~~~p~~gl~~d~-dG~l~v~~~---  136 (372)
                      +.+..|.+|++|++|+||+.+.      .++|++++  +|+ .+.+..+      ...+. ++++++ +|.+||++.   
T Consensus        64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~-~v~vd~~~g~~yvtd~~~~  142 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVN-DLAVDLIHNFVYISDPAPD  142 (343)
T ss_dssp             CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCC-EEEEETTTTEEEEEECCSG
T ss_pred             cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccc-eEEEecCCCEEEEEcCccC
Confidence            3477899999999999999983      47999999  576 4444322      13467 999996 478999986   


Q ss_pred             C-CcEEEEc-CCC-cEEEeee------------cCCccc-------------ccccceEEccCC-cEEEEeCCCCCCCcc
Q 017371          137 A-NGLHKVS-EDG-VENFLSY------------VNGSKL-------------RFANDVVEASDG-SLYFTVSSSKYLPHE  187 (372)
Q Consensus       137 ~-~gv~~~~-~~g-~~~l~~~------------~~~~~~-------------~~~~~l~~d~dG-~i~vtd~~~~~~~~~  187 (372)
                      . .+|++++ .+| ...+...            ..+..+             ..+++|++++|| .+|+++..       
T Consensus       143 ~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~-------  215 (343)
T 2qe8_A          143 DKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMH-------  215 (343)
T ss_dssp             GGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESS-------
T ss_pred             CCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCC-------
Confidence            3 6789999 556 3322211            011111             246899999999 59998652       


Q ss_pred             cccccccccCCCeEEEEeCC---CCe---------EEEEeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEc-cCCCCc
Q 017371          188 YCLDILEGKPHGQLLKYDPS---SNI---------TTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWL-KGERKG  254 (372)
Q Consensus       188 ~~~~~~~~~~~g~v~~~d~~---t~~---------~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~-~g~~~~  254 (372)
                                ..+|++++.+   .+.         ++.. .....|+|++++++|+ +|+++..+++|.+|+. +|.   
T Consensus       216 ----------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-g~~g~pdgia~d~~G~-l~va~~~~~~V~~~d~~~G~---  280 (343)
T 2qe8_A          216 ----------STSMYRIKSADLSNLQLTDAELGSKIERY-SEKPICDGISIDKDHN-IYVGDLAHSAIGVITSADRA---  280 (343)
T ss_dssp             ----------CSEEEEEEHHHHTCTTCCHHHHHTTCEEE-EECCSCSCEEECTTCC-EEEEEGGGTEEEEEETTTTE---
T ss_pred             ----------CCeEEEEEHHHhcCCCCChhhhhcceEec-ccCCCCceEEECCCCC-EEEEccCCCeEEEEECCCCC---
Confidence                      3488998742   110         1111 1234789999999986 9999999999999998 442   


Q ss_pred             ceeeeccC-CCCCCceeEEcCCCCEEEEEec
Q 017371          255 KLETFAEN-LPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       255 ~~~~~~~~-~~g~p~~i~~d~~G~lwva~~~  284 (372)
                       ...+... ....|++++++++|++||++..
T Consensus       281 -~~~~~~~~~~~~p~~va~~~~g~l~v~~~~  310 (343)
T 2qe8_A          281 -YKLLVTDEKLSWTDSFNFGSDGYLYFDCNQ  310 (343)
T ss_dssp             -EEEEEECGGGSCEEEEEECTTSCEEEEECC
T ss_pred             -EEEEEECCceecCCeeEECCCCcEEEEeCc
Confidence             2233221 1246999999999999999875

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.48  E-value=2.6e-11  Score=111.09  Aligned_cols=234  Identities=11%  Similarity=0.097  Sum_probs=146.7

Q ss_pred             CCCccEEEcCCCc-EEEEecC-CeEEEEe-C---CceEEEE--ecCCCcccCeEEcCCCC-EEEEeCCCc-EEEEc-CCC
Q 017371           79 NHPEDASMDKNGV-IYTATRD-GWIKRLQ-D---GTWVNWK--FIDSQTLVGLTSTKEGH-LIICDNANG-LHKVS-EDG  147 (372)
Q Consensus        79 ~~p~~i~~d~~G~-l~v~~~~-g~i~~~~-~---g~~~~~~--~~~~~p~~gl~~d~dG~-l~v~~~~~g-v~~~~-~~g  147 (372)
                      ..|.+++++++|. ||+++.+ +.|..|+ +   ++.+...  ...+.|. +++++++|+ ||++....+ +..++ .+|
T Consensus        38 ~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~  116 (343)
T 1ri6_A           38 GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLT-HISTDHQGQFVFVGSYNAGNVSVTRLEDG  116 (343)
T ss_dssp             SCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCS-EEEECTTSSEEEEEETTTTEEEEEEEETT
T ss_pred             CCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCc-EEEEcCCCCEEEEEecCCCeEEEEECCCC
Confidence            4799999999996 8888854 8888877 3   4544332  2234778 999999997 777765444 66676 455


Q ss_pred             -cEEEeeecCCcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCC-CeEEEE------eCCc
Q 017371          148 -VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS-NITTLV------ADGF  218 (372)
Q Consensus       148 -~~~l~~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t-~~~~~~------~~~~  218 (372)
                       ...........  ..+..++++++|+ +|+++.                 ..+.|+.+|..+ ++....      ....
T Consensus       117 ~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~-----------------~~~~v~~~d~~~~~~~~~~~~~~~~~~~~  177 (343)
T 1ri6_A          117 LPVGVVDVVEGL--DGCHSANISPDNRTLWVPAL-----------------KQDRICLFTVSDDGHLVAQDPAEVTTVEG  177 (343)
T ss_dssp             EEEEEEEEECCC--TTBCCCEECTTSSEEEEEEG-----------------GGTEEEEEEECTTSCEEEEEEEEEECSTT
T ss_pred             ccccccccccCC--CCceEEEECCCCCEEEEecC-----------------CCCEEEEEEecCCCceeeecccccccCCC
Confidence             22222222221  3578899999995 777643                 356788888765 655422      1223


Q ss_pred             cCcceEEEecCCCEEEEEeCCCCeEEEEEccC--CCCcceeeeccCC-----CCCCceeEEcCCCC-EEEEEecCchhHH
Q 017371          219 YFANGVALSRDEDYVVVCESWKFRCRKYWLKG--ERKGKLETFAENL-----PGAPDNINLAPDGT-FWIAIIKLDARRM  290 (372)
Q Consensus       219 ~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g--~~~~~~~~~~~~~-----~g~p~~i~~d~~G~-lwva~~~~~~~~~  290 (372)
                      ..|.+++++||++++|++....+.|..|+++.  .+...........     ...+..++++++|+ +|++...      
T Consensus       178 ~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~------  251 (343)
T 1ri6_A          178 AGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRT------  251 (343)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETT------
T ss_pred             CCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecC------
Confidence            46778999999999999988888999999853  2221122221111     11345699999995 6666643      


Q ss_pred             HHhhcchhHHHHHHhcCccccccccCCCceEEEEECCC--C-c--EEEEEECCCCCeeccceeeEEE--CCEEEEEeCCC
Q 017371          291 KILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED--G-T--IIRNLVDPTGQLMSFVTSGLQV--DNHLYVISLTS  363 (372)
Q Consensus       291 ~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~--g-~--~~~~~~~~~g~~~~~~t~~~~~--~g~L~igs~~~  363 (372)
                                                  .+.+..++.+  + +  .+..+..  +.   .+..+...  +..||+++...
T Consensus       252 ----------------------------~~~i~v~d~~~~~~~~~~~~~~~~--~~---~~~~~~~s~dg~~l~~~~~~~  298 (343)
T 1ri6_A          252 ----------------------------ASLITVFSVSEDGSVLSKEGFQPT--ET---QPRGFNVDHSGKYLIAAGQKS  298 (343)
T ss_dssp             ----------------------------TTEEEEEEECTTSCCEEEEEEEEC--SS---SCCCEEECTTSSEEEEECTTT
T ss_pred             ----------------------------CCEEEEEEEcCCCCceEEeeeecC--CC---ccceEEECCCCCEEEEecCCC
Confidence                                        2345555432  2 2  2333332  21   24556664  35688888777


Q ss_pred             CeEEEEeC
Q 017371          364 NFIGKVQL  371 (372)
Q Consensus       364 ~~i~~~~~  371 (372)
                      +.|.++++
T Consensus       299 ~~v~v~~~  306 (343)
T 1ri6_A          299 HHISVYEI  306 (343)
T ss_dssp             CEEEEEEE
T ss_pred             CeEEEEEE
Confidence            88888753

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.48  E-value=3.4e-12  Score=116.57  Aligned_cols=191  Identities=13%  Similarity=0.133  Sum_probs=131.2

Q ss_pred             CCcccCeEEcCCCCEEEEeCC-CcEEEEcCCC-cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCccccccccc
Q 017371          117 SQTLVGLTSTKEGHLIICDNA-NGLHKVSEDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILE  194 (372)
Q Consensus       117 ~~p~~gl~~d~dG~l~v~~~~-~gv~~~~~~g-~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~  194 (372)
                      ..|. +++++++|+||+++.. ..|++++.++ ....... .    ..|++|+++++|++|+++..              
T Consensus        32 ~~pe-gia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~~-~----~~p~gia~~~dG~l~vad~~--------------   91 (306)
T 2p4o_A           32 TFLE-NLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATV-E----GKVSGLAFTSNGDLVATGWN--------------   91 (306)
T ss_dssp             CCEE-EEEECTTSCEEEEETTTTEEEEECTTCCEEEEEEC-S----SEEEEEEECTTSCEEEEEEC--------------
T ss_pred             CCcc-eEEECCCCCEEEEeCCCCeEEEECCCCceEEEEeC-C----CCceeEEEcCCCcEEEEecc--------------
Confidence            4677 9999999999999854 5699999666 4333221 2    35889999999999998742              


Q ss_pred             ccCCCeEEEEeCCCCeEEEEeC--CccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceee--------eccCCC
Q 017371          195 GKPHGQLLKYDPSSNITTLVAD--GFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLET--------FAENLP  264 (372)
Q Consensus       195 ~~~~g~v~~~d~~t~~~~~~~~--~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~--------~~~~~~  264 (372)
                       ....+|+++|+.+++++.+..  ...+++|++..+++ .+|+++...++|++++..+.+ .....        ......
T Consensus        92 -~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~-~~~v~d~~~g~i~~~d~~~~~-~~v~~~~~~~~~~~~~~~~  168 (306)
T 2p4o_A           92 -ADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDT-QYLTADSYRGAIWLIDVVQPS-GSIWLEHPMLARSNSESVF  168 (306)
T ss_dssp             -TTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSS-EEEEEETTTTEEEEEETTTTE-EEEEEECGGGSCSSTTCCS
T ss_pred             -CCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCC-cEEEEECCCCeEEEEeCCCCc-EeEEEECCccccccccCCC
Confidence             012369999988888876543  45678899887654 699999888899999976421 01100        000111


Q ss_pred             CCCceeEEcCCC-CEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEECCC--CcE--EEEEECCC
Q 017371          265 GAPDNINLAPDG-TFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED--GTI--IRNLVDPT  339 (372)
Q Consensus       265 g~p~~i~~d~~G-~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~--g~~--~~~~~~~~  339 (372)
                      ..|++|  +++| ++|+++..                                  .+.|.+|+.+  |+.  ...+..  
T Consensus       169 ~~pngi--s~dg~~lyv~d~~----------------------------------~~~I~~~~~~~~g~~~~~~~~~~--  210 (306)
T 2p4o_A          169 PAANGL--KRFGNFLYVSNTE----------------------------------KMLLLRIPVDSTDKPGEPEIFVE--  210 (306)
T ss_dssp             CSEEEE--EEETTEEEEEETT----------------------------------TTEEEEEEBCTTSCBCCCEEEEE--
T ss_pred             CcCCCc--CcCCCEEEEEeCC----------------------------------CCEEEEEEeCCCCCCCccEEEec--
Confidence            257888  5555 79999976                                  4578888754  432  122221  


Q ss_pred             CCeeccceeeEEE-CCEEEEEeCCCCeEEEEeC
Q 017371          340 GQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL  371 (372)
Q Consensus       340 g~~~~~~t~~~~~-~g~L~igs~~~~~i~~~~~  371 (372)
                         ...+..++.+ +|+||+++..++.|.+++.
T Consensus       211 ---~~~P~gi~vd~dG~l~va~~~~~~V~~~~~  240 (306)
T 2p4o_A          211 ---QTNIDDFAFDVEGNLYGATHIYNSVVRIAP  240 (306)
T ss_dssp             ---SCCCSSEEEBTTCCEEEECBTTCCEEEECT
T ss_pred             ---cCCCCCeEECCCCCEEEEeCCCCeEEEECC
Confidence               1235666776 6899999999999999874

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=99.46  E-value=3.3e-11  Score=111.28  Aligned_cols=222  Identities=9%  Similarity=0.041  Sum_probs=136.1

Q ss_pred             eEEEEecCCCcccCeEEcCCCCEEEEeC-CCcEEEEc-CCC-cEEEeee--cCCcccccccceEEcc----CCcEEEEeC
Q 017371          109 WVNWKFIDSQTLVGLTSTKEGHLIICDN-ANGLHKVS-EDG-VENFLSY--VNGSKLRFANDVVEAS----DGSLYFTVS  179 (372)
Q Consensus       109 ~~~~~~~~~~p~~gl~~d~dG~l~v~~~-~~gv~~~~-~~g-~~~l~~~--~~~~~~~~~~~l~~d~----dG~i~vtd~  179 (372)
                      ++.+......|. +|++.+||+|||++. ...|++++ .+| .+.+...  ........+.+|++++    +|.||++.+
T Consensus        24 ~~~va~gL~~P~-~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt  102 (347)
T 3das_A           24 LRTVATGLNSPW-GLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFT  102 (347)
T ss_dssp             EEEEECCCSSEE-EEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEE
T ss_pred             eEEeecCCCCce-EEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEe
Confidence            345566677899 999999999999987 45588888 456 4444321  1122345778999998    489999743


Q ss_pred             CCCCCCcccccccccccCCCeEEEEeCCCC--------eEEEEeC-----CccCcceEEEecCCCEEEEEe---------
Q 017371          180 SSKYLPHEYCLDILEGKPHGQLLKYDPSSN--------ITTLVAD-----GFYFANGVALSRDEDYVVVCE---------  237 (372)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~--------~~~~~~~-----~~~~~~gi~~~~dg~~l~v~~---------  237 (372)
                      .               ...++|+|+..+.+        +.+++..     ..++...++|++||. |||+.         
T Consensus       103 ~---------------~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~-Lyvt~Gd~~~~~~~  166 (347)
T 3das_A          103 S---------------ASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM-LYAGTGESGDTGLS  166 (347)
T ss_dssp             C---------------SSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC-EEEECBCTTCGGGT
T ss_pred             c---------------CCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC-EEEEECCCCCCccc
Confidence            1               13468888865431        2344332     234567799999996 99984         


Q ss_pred             ----CCCCeEEEEEccCCCC-----cceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCc
Q 017371          238 ----SWKFRCRKYWLKGERK-----GKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPK  308 (372)
Q Consensus       238 ----~~~~~i~~~~~~g~~~-----~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~  308 (372)
                          ....+|+|++.+|...     ...+++...+ ..|.++++|++|+||+++.....                   ++
T Consensus       167 qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~-RNp~Gla~dp~G~L~~~d~g~~~-------------------~d  226 (347)
T 3das_A          167 QDRKSLGGKILRMTPDGEPAPGNPFPGSPVYSYGH-RNVQGLAWDDKQRLFASEFGQDT-------------------WD  226 (347)
T ss_dssp             TCTTCSTTCEEEECTTSSBCTTCSSTTCCEEEBCC-SBCCEEEECTTCCEEEEECCSSS-------------------CE
T ss_pred             cCCCCCCCEEEEEeCCCCccCCCCCCCCeEEeeCC-CCcceEEECCCCCEEEEecCCCC-------------------Cc
Confidence                2357899999887410     0224454333 34899999999999999987321                   11


Q ss_pred             cccccccCCCceEEEEEC---CCC--cEEEEEECCCCCeeccceeeEEECCEEEEEeCCCCeEEEEeC
Q 017371          309 LFSQFITLGGGAHLIHVA---EDG--TIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL  371 (372)
Q Consensus       309 ~~~~~~~~~~~~~v~~~~---~~g--~~~~~~~~~~g~~~~~~t~~~~~~g~L~igs~~~~~i~~~~~  371 (372)
                      .+..+.....+|+-++..   ..+  ..+..+. +.   ...++.+.+.+|.+|++.+.+.+|.++.+
T Consensus       227 eln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~-~~---~~ap~G~~~~~g~~~~~~l~~~~l~~v~~  290 (347)
T 3das_A          227 ELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWS-TD---EASPSGIAYAEGSVWMAGLRGERLWRIPL  290 (347)
T ss_dssp             EEEEECTTCBCCTTTCCSSCCCTTCCCCSEEEC-TT---TCCEEEEEEETTEEEEEESTTCSEEEEEE
T ss_pred             eeeEEcCCCEecCCcccCCCCCccccCCcEecC-CC---CCCCcceEEEcCceeeccccCCEEEEEEe
Confidence            111111111111100000   000  0111221 11   12467888889999999999999999876

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.46  E-value=1.1e-11  Score=110.14  Aligned_cols=194  Identities=13%  Similarity=0.119  Sum_probs=135.6

Q ss_pred             CcccCeEEcCCCCEEEEeCC---CcEEEEc-CCC--cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccc
Q 017371          118 QTLVGLTSTKEGHLIICDNA---NGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLD  191 (372)
Q Consensus       118 ~p~~gl~~d~dG~l~v~~~~---~gv~~~~-~~g--~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~  191 (372)
                      .+. ||++++||.||+++..   +.|.++| .+|  ...+.  .+.  ..+..+++++ +++||+++.            
T Consensus        22 f~~-Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~--l~~--~~fgeGi~~~-g~~lyv~t~------------   83 (266)
T 2iwa_A           22 FTQ-GLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHK--MDD--SYFGEGLTLL-NEKLYQVVW------------   83 (266)
T ss_dssp             CEE-EEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEE--CCT--TCCEEEEEEE-TTEEEEEET------------
T ss_pred             Ccc-cEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEe--cCC--CcceEEEEEe-CCEEEEEEe------------
Confidence            467 9999988999998742   5699999 677  33332  121  2345577876 469999865            


Q ss_pred             cccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccC--CCCCCce
Q 017371          192 ILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAEN--LPGAPDN  269 (372)
Q Consensus       192 ~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~--~~g~p~~  269 (372)
                           ..+.++.||+++.+.......- .+.|..+++||+.+|+++ +.++|..++..+.+....-.....  .-..|++
T Consensus        84 -----~~~~v~viD~~t~~v~~~i~~g-~~~g~glt~Dg~~l~vs~-gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~ne  156 (266)
T 2iwa_A           84 -----LKNIGFIYDRRTLSNIKNFTHQ-MKDGWGLATDGKILYGSD-GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNE  156 (266)
T ss_dssp             -----TCSEEEEEETTTTEEEEEEECC-SSSCCEEEECSSSEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEE
T ss_pred             -----cCCEEEEEECCCCcEEEEEECC-CCCeEEEEECCCEEEEEC-CCCeEEEEECCCCcEEEEEEECCCCccccccee
Confidence                 5688999999887654433221 477888899999999998 678999999876432221111111  1124677


Q ss_pred             eEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEECC-CCcEEEEEECCCC--------
Q 017371          270 INLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTG--------  340 (372)
Q Consensus       270 i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g--------  340 (372)
                      +.+. +|.+|++.+.                                  .+.|.++|+ +|+++..+.....        
T Consensus       157 le~~-dg~lyvn~~~----------------------------------~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~  201 (266)
T 2iwa_A          157 LEYI-NGEVWANIWQ----------------------------------TDCIARISAKDGTLLGWILLPNLRKKLIDEG  201 (266)
T ss_dssp             EEEE-TTEEEEEETT----------------------------------SSEEEEEETTTCCEEEEEECHHHHHHHHHTT
T ss_pred             EEEE-CCEEEEecCC----------------------------------CCeEEEEECCCCcEEEEEECCCccccccccc
Confidence            8777 7899999876                                  468999996 5899888865310        


Q ss_pred             -CeeccceeeEEE--CCEEEEEeCCCCeEEEEeC
Q 017371          341 -QLMSFVTSGLQV--DNHLYVISLTSNFIGKVQL  371 (372)
Q Consensus       341 -~~~~~~t~~~~~--~g~L~igs~~~~~i~~~~~  371 (372)
                       .....+.++..+  ++++|++.-..+.|.++++
T Consensus       202 ~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l  235 (266)
T 2iwa_A          202 FRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKL  235 (266)
T ss_dssp             CTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred             ccccCceEEEEEcCCCCEEEEECCCCCeEEEEEE
Confidence             011245777776  3799999999999999885

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.44  E-value=2e-10  Score=106.72  Aligned_cols=238  Identities=16%  Similarity=0.223  Sum_probs=145.8

Q ss_pred             CCCCccEEEcCCCc-EEEEecC----CeEEEEe---C-CceEEEEe---cCCCcccCeEEcCCC-CEEEEeCCC-cEEEE
Q 017371           78 VNHPEDASMDKNGV-IYTATRD----GWIKRLQ---D-GTWVNWKF---IDSQTLVGLTSTKEG-HLIICDNAN-GLHKV  143 (372)
Q Consensus        78 ~~~p~~i~~d~~G~-l~v~~~~----g~i~~~~---~-g~~~~~~~---~~~~p~~gl~~d~dG-~l~v~~~~~-gv~~~  143 (372)
                      ...|..++++++|+ ||+++.+    |.|..|+   + |+.+.+..   ....|. ++++  +| .||+++... .+..+
T Consensus        49 ~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~-~~~~--dg~~l~~~~~~~~~v~~~  125 (361)
T 3scy_A           49 VANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPC-YLTT--NGKNIVTANYSGGSITVF  125 (361)
T ss_dssp             CSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEE-EEEE--CSSEEEEEETTTTEEEEE
T ss_pred             CCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcE-EEEE--CCCEEEEEECCCCEEEEE
Confidence            46899999999996 8888754    6776554   3 66655432   345677 8888  55 588887554 36666


Q ss_pred             c--CCC-cEEEee--ecCCc-------ccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEE--eCCC
Q 017371          144 S--EDG-VENFLS--YVNGS-------KLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKY--DPSS  208 (372)
Q Consensus       144 ~--~~g-~~~l~~--~~~~~-------~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~--d~~t  208 (372)
                      +  .++ +..+..  ...+.       ....++.+++++||+ +|+++.                 ..+.|..|  +..+
T Consensus       126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~-----------------~~~~v~v~~~~~~~  188 (361)
T 3scy_A          126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDL-----------------GTDQIHKFNINPNA  188 (361)
T ss_dssp             EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEET-----------------TTTEEEEEEECTTC
T ss_pred             EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeC-----------------CCCEEEEEEEcCCC
Confidence            6  344 322111  11110       112346799999997 888764                 34455555  5444


Q ss_pred             C----e-E-------EEEeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccC--CCCCCceeEEcC
Q 017371          209 N----I-T-------TLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAEN--LPGAPDNINLAP  274 (372)
Q Consensus       209 ~----~-~-------~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~--~~g~p~~i~~d~  274 (372)
                      +    + +       .........|.+++|+|||+++|+++...+.|..|++++.+..........  ....|.++++++
T Consensus       189 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~sp  268 (361)
T 3scy_A          189 NADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSP  268 (361)
T ss_dssp             CTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECT
T ss_pred             CcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECC
Confidence            3    2 2       222333456789999999999999998788999999874432222222111  112366899999


Q ss_pred             CCC-EEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEEC-CCCcE--EEEEECCCCCeeccceeeE
Q 017371          275 DGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVA-EDGTI--IRNLVDPTGQLMSFVTSGL  350 (372)
Q Consensus       275 ~G~-lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~-~~g~~--~~~~~~~~g~~~~~~t~~~  350 (372)
                      ||+ ||++....                               ...-.++.++ .+|+.  +..+..  |.   .+..+.
T Consensus       269 dg~~l~v~~~~~-------------------------------~~~i~v~~~~~~~g~~~~~~~~~~--g~---~~~~~~  312 (361)
T 3scy_A          269 DGKYLYASNRLK-------------------------------ADGVAIFKVDETNGTLTKVGYQLT--GI---HPRNFI  312 (361)
T ss_dssp             TSSEEEEEECSS-------------------------------SCEEEEEEECTTTCCEEEEEEEEC--SS---CCCEEE
T ss_pred             CCCEEEEECCCC-------------------------------CCEEEEEEEcCCCCcEEEeeEecC--CC---CCceEE
Confidence            997 66666430                               1123566666 34664  333333  32   355666


Q ss_pred             EE-C-CEEEEEeCCCCeEEEEeC
Q 017371          351 QV-D-NHLYVISLTSNFIGKVQL  371 (372)
Q Consensus       351 ~~-~-g~L~igs~~~~~i~~~~~  371 (372)
                      .. + ..||+++...+.|.++++
T Consensus       313 ~spdg~~l~~~~~~~~~v~v~~~  335 (361)
T 3scy_A          313 ITPNGKYLLVACRDTNVIQIFER  335 (361)
T ss_dssp             ECTTSCEEEEEETTTTEEEEEEE
T ss_pred             ECCCCCEEEEEECCCCCEEEEEE
Confidence            65 3 569999988899988654

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=99.43  E-value=7.4e-11  Score=104.26  Aligned_cols=191  Identities=12%  Similarity=0.165  Sum_probs=128.7

Q ss_pred             CCCCCCccEEEcCC-CcEEEE-ecCCeEEEEe-CCceEEEEe--cCCCcccCeEEcCCCCEEEEeCC-CcEEEEc--CCC
Q 017371           76 GSVNHPEDASMDKN-GVIYTA-TRDGWIKRLQ-DGTWVNWKF--IDSQTLVGLTSTKEGHLIICDNA-NGLHKVS--EDG  147 (372)
Q Consensus        76 g~~~~p~~i~~d~~-G~l~v~-~~~g~i~~~~-~g~~~~~~~--~~~~p~~gl~~d~dG~l~v~~~~-~gv~~~~--~~g  147 (372)
                      |....+.+|+.+++ +.||+. +.+++|++++ +|++..-..  ...++- ||+++++|.+||++.. ++++.++  .++
T Consensus        24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~l~g~~D~E-GIa~~~~g~~~vs~E~~~~l~~~~v~~~~  102 (255)
T 3qqz_A           24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPLDFVKDLE-TIEYIGDNQFVISDERDYAIYVISLTPNS  102 (255)
T ss_dssp             TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEECSSCSSEE-EEEECSTTEEEEEETTTTEEEEEEECTTC
T ss_pred             CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEecCCCCChH-HeEEeCCCEEEEEECCCCcEEEEEcCCCC
Confidence            44467999999975 579975 4889999999 776544332  235677 9999999999898655 5677766  344


Q ss_pred             -cEEEeee-cC---CcccccccceEEccCC-cEEEEeCCCCCCCcccccccccccCCCeEEEEeC--CCCeEEEEeC---
Q 017371          148 -VENFLSY-VN---GSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDP--SSNITTLVAD---  216 (372)
Q Consensus       148 -~~~l~~~-~~---~~~~~~~~~l~~d~dG-~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~--~t~~~~~~~~---  216 (372)
                       +..+... .+   ........+|++|+++ ++|++...                ....||.++.  .+...++...   
T Consensus       103 ~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~----------------~p~~i~~~~g~~~~~~l~i~~~~~~  166 (255)
T 3qqz_A          103 EVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEK----------------NPIEVYKVNGLLSSNELHISKDKAL  166 (255)
T ss_dssp             CEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEES----------------SSEEEEEEESTTCSSCCEEEECHHH
T ss_pred             eeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECc----------------CCceEEEEcccccCCceeeecchhh
Confidence             3332221 11   1222345799999887 89997532                2337888872  2233443321   


Q ss_pred             ----CccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCC------CCCCceeEEcCCCCEEEEEec
Q 017371          217 ----GFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENL------PGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       217 ----~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~------~g~p~~i~~d~~G~lwva~~~  284 (372)
                          .+..+.+++++|..+++|+.......|..++.+|..... ..+....      ...|.||++|++|++||++-.
T Consensus       167 ~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~-~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~  243 (255)
T 3qqz_A          167 QRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGE-MSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEP  243 (255)
T ss_dssp             HHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEE-EECSTTGGGCSSCCCSEEEEEECTTCCEEEEETT
T ss_pred             ccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEE-EEcCCccCCcccccCCCCeeEECCCCCEEEEcCC
Confidence                244578999999999999999999999999987752221 1111111      125899999999999999755

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.43  E-value=6.4e-12  Score=115.86  Aligned_cols=175  Identities=12%  Similarity=0.112  Sum_probs=124.3

Q ss_pred             CCccEEEcCCCcEEEEecCCeEEEEe--CCceEEEEec-----CCCcccCeEEcCCCCEEEEeCC-------CcEEEEcC
Q 017371           80 HPEDASMDKNGVIYTATRDGWIKRLQ--DGTWVNWKFI-----DSQTLVGLTSTKEGHLIICDNA-------NGLHKVSE  145 (372)
Q Consensus        80 ~p~~i~~d~~G~l~v~~~~g~i~~~~--~g~~~~~~~~-----~~~p~~gl~~d~dG~l~v~~~~-------~gv~~~~~  145 (372)
                      .+.+++++++|++|+++.+ +|++++  +|+++.+...     ...+. ++++|++|++|+++..       .+|++++ 
T Consensus        91 ~v~~i~~~~dg~l~v~~~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~-~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-  167 (326)
T 2ghs_A           91 MGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHAELESDLPGNRSN-DGRMHPSGALWIGTMGRKAETGAGSIYHVA-  167 (326)
T ss_dssp             CEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEECSSTTCTTEEEE-EEEECTTSCEEEEEEETTCCTTCEEEEEEE-
T ss_pred             cceEEEEeCCCeEEEEECC-CEEEEECCCCcEEEEeeCCCCCCCCCCC-CEEECCCCCEEEEeCCCcCCCCceEEEEEe-
Confidence            6788999999999999854 599999  6777665432     12467 8999999999998742       3689998 


Q ss_pred             CC-cEEEeeecCCcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCC--CC-eE---EEEe--
Q 017371          146 DG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS--SN-IT---TLVA--  215 (372)
Q Consensus       146 ~g-~~~l~~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~--t~-~~---~~~~--  215 (372)
                      +| .+.+...     ...++++++++||+ +|+++.                 ..++|+++|.+  ++ +.   +.+.  
T Consensus       168 ~g~~~~~~~~-----~~~~~~i~~s~dg~~lyv~~~-----------------~~~~I~~~d~~~~~Gl~~~~~~~~~~~  225 (326)
T 2ghs_A          168 KGKVTKLFAD-----ISIPNSICFSPDGTTGYFVDT-----------------KVNRLMRVPLDARTGLPTGKAEVFIDS  225 (326)
T ss_dssp             TTEEEEEEEE-----ESSEEEEEECTTSCEEEEEET-----------------TTCEEEEEEBCTTTCCBSSCCEEEEEC
T ss_pred             CCcEEEeeCC-----CcccCCeEEcCCCCEEEEEEC-----------------CCCEEEEEEcccccCCcccCceEEEEC
Confidence            67 5544322     23578999999995 899865                 35689999864  55 32   2222  


Q ss_pred             -CCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEc-CCC-CEEEEEec
Q 017371          216 -DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLA-PDG-TFWIAIIK  284 (372)
Q Consensus       216 -~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d-~~G-~lwva~~~  284 (372)
                       .....|.+++++++|+ +|++....++|.+|+.++..   ...+. .....|.+++++ +++ .|||++..
T Consensus       226 ~~~~~~p~gi~~d~~G~-lwva~~~~~~v~~~d~~g~~---~~~i~-~~~~~~~~~af~g~d~~~L~vt~~~  292 (326)
T 2ghs_A          226 TGIKGGMDGSVCDAEGH-IWNARWGEGAVDRYDTDGNH---IARYE-VPGKQTTCPAFIGPDASRLLVTSAR  292 (326)
T ss_dssp             TTSSSEEEEEEECTTSC-EEEEEETTTEEEEECTTCCE---EEEEE-CSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             CCCCCCCCeeEECCCCC-EEEEEeCCCEEEEECCCCCE---EEEEE-CCCCCcEEEEEecCCCCEEEEEecC
Confidence             1234688999999997 99998777899999885432   12221 112247789987 675 69999876

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.42  E-value=2.5e-10  Score=104.43  Aligned_cols=228  Identities=12%  Similarity=0.086  Sum_probs=141.7

Q ss_pred             CCcEEEEe-cCCeEEEEe-C--CceEEE--EecCCCcccCeEEcCCCC-EEEEeCC-CcEEEEc-C--CC-cEEEeeecC
Q 017371           89 NGVIYTAT-RDGWIKRLQ-D--GTWVNW--KFIDSQTLVGLTSTKEGH-LIICDNA-NGLHKVS-E--DG-VENFLSYVN  156 (372)
Q Consensus        89 ~G~l~v~~-~~g~i~~~~-~--g~~~~~--~~~~~~p~~gl~~d~dG~-l~v~~~~-~gv~~~~-~--~g-~~~l~~~~~  156 (372)
                      +..+|+++ .++.|..|+ +  ++.+..  ......+. +++++++|+ ||++... ..+..++ .  +| .+.+... .
T Consensus         4 ~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~   81 (343)
T 1ri6_A            4 KQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQ-PMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAES-A   81 (343)
T ss_dssp             EEEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCC-CEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE-E
T ss_pred             eEEEEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCc-eEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccc-c
Confidence            34688885 688899887 3  544332  23445678 999999997 7887765 4566655 3  45 4444322 1


Q ss_pred             CcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCC---eEEEEeCCccCcceEEEecCCCE
Q 017371          157 GSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN---ITTLVADGFYFANGVALSRDEDY  232 (372)
Q Consensus       157 ~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~---~~~~~~~~~~~~~gi~~~~dg~~  232 (372)
                      ..  ..+..++++++|+ +|++..                 ..+.|..+|.+++   +..........+.++++++|+++
T Consensus        82 ~~--~~~~~~~~s~dg~~l~~~~~-----------------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~  142 (343)
T 1ri6_A           82 LP--GSLTHISTDHQGQFVFVGSY-----------------NAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRT  142 (343)
T ss_dssp             CS--SCCSEEEECTTSSEEEEEET-----------------TTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSE
T ss_pred             cC--CCCcEEEEcCCCCEEEEEec-----------------CCCeEEEEECCCCccccccccccCCCCceEEEECCCCCE
Confidence            11  2678999999997 777643                 3566777776323   33333455566889999999999


Q ss_pred             EEEEeCCCCeEEEEEccC-CCCccee--eeccCCCCCCceeEEcCCCC-EEEEEecCchhHHHHhhcchhHHHHHHhcCc
Q 017371          233 VVVCESWKFRCRKYWLKG-ERKGKLE--TFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPK  308 (372)
Q Consensus       233 l~v~~~~~~~i~~~~~~g-~~~~~~~--~~~~~~~g~p~~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~  308 (372)
                      +|+++...+.|..|++.. .+.....  .........|.+++++++|+ +|++...                        
T Consensus       143 l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~------------------------  198 (343)
T 1ri6_A          143 LWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL------------------------  198 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETT------------------------
T ss_pred             EEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCC------------------------
Confidence            999987778899999865 3222211  22212223588899999997 7777644                        


Q ss_pred             cccccccCCCceEEEEECC---CCcE--EEEEEC-CCC-CeeccceeeEEE--CCEEEEEeCCCCeEEEEeC
Q 017371          309 LFSQFITLGGGAHLIHVAE---DGTI--IRNLVD-PTG-QLMSFVTSGLQV--DNHLYVISLTSNFIGKVQL  371 (372)
Q Consensus       309 ~~~~~~~~~~~~~v~~~~~---~g~~--~~~~~~-~~g-~~~~~~t~~~~~--~g~L~igs~~~~~i~~~~~  371 (372)
                                .+.+..++.   .|+.  ...+.. +.+ .....+..+...  +..||++....+.|.++++
T Consensus       199 ----------~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~  260 (343)
T 1ri6_A          199 ----------NSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSV  260 (343)
T ss_dssp             ----------TTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             ----------CCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEE
Confidence                      234555543   2433  223321 222 112234456665  3478888877788887765

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=99.41  E-value=4e-12  Score=122.51  Aligned_cols=170  Identities=14%  Similarity=0.139  Sum_probs=118.8

Q ss_pred             CceEecCCCCCCCccEEEcCCCcEEEEecCC-eEEEEe--CCceEEEEe---------cCCCcccCeEEcC----CCCEE
Q 017371           69 DFIKVGEGSVNHPEDASMDKNGVIYTATRDG-WIKRLQ--DGTWVNWKF---------IDSQTLVGLTSTK----EGHLI  132 (372)
Q Consensus        69 ~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~g-~i~~~~--~g~~~~~~~---------~~~~p~~gl~~d~----dG~l~  132 (372)
                      .++++.++ +..|.+|+++++|+||+++..| +|++++  +|+.+.+..         ..+.++ ||+++|    +|.||
T Consensus        18 ~~~~~a~~-l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gll-gia~~Pdf~~~g~lY   95 (454)
T 1cru_A           18 DKKVILSN-LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLL-GFAFHPDFKNNPYIY   95 (454)
T ss_dssp             CEEEEECC-CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEE-EEEECTTTTTSCEEE
T ss_pred             EEEEEECC-CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCcee-EEEECCCcCcCCEEE
Confidence            56677776 8899999999999999999765 799998  466655432         124566 999998    68899


Q ss_pred             EEeCC-------------CcEEEEc-CC--C----cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCC-Ccccc--
Q 017371          133 ICDNA-------------NGLHKVS-ED--G----VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYL-PHEYC--  189 (372)
Q Consensus       133 v~~~~-------------~gv~~~~-~~--g----~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~-~~~~~--  189 (372)
                      |+...             ..|++++ .+  +    .+++....+....+..++|++++||+|||+....-.. ....+  
T Consensus        96 v~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~~~~~~~~~~~~  175 (454)
T 1cru_A           96 ISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLP  175 (454)
T ss_dssp             EEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTTTTSGGGTTSC
T ss_pred             EEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECCCCCCCccccccc
Confidence            99742             3588877 22  2    2344444444445788999999999999986431100 00000  


Q ss_pred             ------------cccccccCCCeEEEEeCCCC-----------eEEEEeCCccCcceEEEecCCCEEEEEeCCCC
Q 017371          190 ------------LDILEGKPHGQLLKYDPSSN-----------ITTLVADGFYFANGVALSRDEDYVVVCESWKF  241 (372)
Q Consensus       190 ------------~~~~~~~~~g~v~~~d~~t~-----------~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~  241 (372)
                                  .........|+|+|+++++.           ..++++.++.+|.|++|+++|+ ||+++.+.+
T Consensus       176 ~~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~RNp~gla~dp~G~-L~~~d~g~~  249 (454)
T 1cru_A          176 NQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTPNGK-LLQSEQGPN  249 (454)
T ss_dssp             CCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECTTSC-EEEEEECSS
T ss_pred             cccccccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECCCCcceEEECCCCC-EEEEecCCC
Confidence                        00001123689999999855           4677889999999999999876 999997543

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.40  E-value=1.2e-10  Score=106.19  Aligned_cols=220  Identities=14%  Similarity=0.057  Sum_probs=144.3

Q ss_pred             CCccEEEcCCC-cEEEEe-cCCeEEEEe--CCceEEEEecCC------CcccCeEEcCCC-CEEEEe------------C
Q 017371           80 HPEDASMDKNG-VIYTAT-RDGWIKRLQ--DGTWVNWKFIDS------QTLVGLTSTKEG-HLIICD------------N  136 (372)
Q Consensus        80 ~p~~i~~d~~G-~l~v~~-~~g~i~~~~--~g~~~~~~~~~~------~p~~gl~~d~dG-~l~v~~------------~  136 (372)
                      .|.+++++++| .+|++. .++.|..++  +++.........      .+. +++++++| .||+++            .
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~~~~~~~~~  113 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLF-GAALSPDGKTLAIYESPVRLELTHFEVQ  113 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTT-CEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccccccc-ceEECCCCCEEEEEeccccccccccccc
Confidence            49999999999 578877 578999999  565443222222      678 99999999 577775            2


Q ss_pred             CCcEEEEc-CCC-c-EEEeeecCCcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEE
Q 017371          137 ANGLHKVS-EDG-V-ENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT  212 (372)
Q Consensus       137 ~~gv~~~~-~~g-~-~~l~~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~  212 (372)
                      ...+..++ .++ . ..+..   +   ..+.+++++++|+ ||++                    ++.|+.+|.++++..
T Consensus       114 ~~~i~v~d~~~~~~~~~~~~---~---~~~~~~~~s~dg~~l~~~--------------------~~~i~~~d~~~~~~~  167 (337)
T 1pby_B          114 PTRVALYDAETLSRRKAFEA---P---RQITMLAWARDGSKLYGL--------------------GRDLHVMDPEAGTLV  167 (337)
T ss_dssp             CCEEEEEETTTTEEEEEEEC---C---SSCCCEEECTTSSCEEEE--------------------SSSEEEEETTTTEEE
T ss_pred             CceEEEEECCCCcEEEEEeC---C---CCcceeEECCCCCEEEEe--------------------CCeEEEEECCCCcEe
Confidence            35688888 555 2 22211   1   2467899999996 7774                    346999999888776


Q ss_pred             EEeCCccCcceEEEecCCCEEEEEeCCCC-----------------------eEEEEEccCCCCcceeeeccCCCCCCce
Q 017371          213 LVADGFYFANGVALSRDEDYVVVCESWKF-----------------------RCRKYWLKGERKGKLETFAENLPGAPDN  269 (372)
Q Consensus       213 ~~~~~~~~~~gi~~~~dg~~l~v~~~~~~-----------------------~i~~~~~~g~~~~~~~~~~~~~~g~p~~  269 (372)
                      ........+..+++++|++.+|++.....                       .|+.+++.+.+.. ...+. .....|.+
T Consensus       168 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~-~~~~~~~~  245 (337)
T 1pby_B          168 EDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVR-IMDVFYFS  245 (337)
T ss_dssp             EEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEE-ECSSCEEE
T ss_pred             eeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-EeecC-CCCCceee
Confidence            54443333345678999988887765444                       3567777654322 11111 22235778


Q ss_pred             eEEcCCCC-EEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEECCC-CcEEEEEECCCCCeeccce
Q 017371          270 INLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED-GTIIRNLVDPTGQLMSFVT  347 (372)
Q Consensus       270 i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~-g~~~~~~~~~~g~~~~~~t  347 (372)
                      ++++++|+ +|++ ..                                    .|..+|.+ ++.+..+....     .+.
T Consensus       246 ~~~s~dg~~l~~~-~~------------------------------------~v~~~d~~~~~~~~~~~~~~-----~~~  283 (337)
T 1pby_B          246 TAVNPAKTRAFGA-YN------------------------------------VLESFDLEKNASIKRVPLPH-----SYY  283 (337)
T ss_dssp             EEECTTSSEEEEE-ES------------------------------------EEEEEETTTTEEEEEEECSS-----CCC
T ss_pred             EEECCCCCEEEEe-CC------------------------------------eEEEEECCCCcCcceecCCC-----cee
Confidence            99999996 6665 22                                    57778754 66766665432     245


Q ss_pred             eeEEE--CCEEEEEeCCCCeEEEEeC
Q 017371          348 SGLQV--DNHLYVISLTSNFIGKVQL  371 (372)
Q Consensus       348 ~~~~~--~g~L~igs~~~~~i~~~~~  371 (372)
                      ++...  +..||+++ ..+.|.++++
T Consensus       284 ~~~~s~dg~~l~~~~-~~~~i~v~d~  308 (337)
T 1pby_B          284 SVNVSTDGSTVWLGG-ALGDLAAYDA  308 (337)
T ss_dssp             EEEECTTSCEEEEES-BSSEEEEEET
T ss_pred             eEEECCCCCEEEEEc-CCCcEEEEEC
Confidence            55554  35688875 4677888875

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.39  E-value=3.9e-10  Score=111.28  Aligned_cols=231  Identities=8%  Similarity=-0.050  Sum_probs=153.0

Q ss_pred             EEcCCCcEEEEe-cCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCC-EEEEeCCCcEEEEcC--CCcEEEeeecCCc
Q 017371           85 SMDKNGVIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNANGLHKVSE--DGVENFLSYVNGS  158 (372)
Q Consensus        85 ~~d~~G~l~v~~-~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~-l~v~~~~~gv~~~~~--~g~~~l~~~~~~~  158 (372)
                      +++++|.+|++. .++.|..||  .++..........+. ++++++||+ ||+++.+..|..+|.  ...+.+.....+ 
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~~~-~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g-  221 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVH-ISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG-  221 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTTEE-EEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECC-
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcccc-eEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecC-
Confidence            478889999988 688999999  565543333333478 999999995 788877666888884  222222221122 


Q ss_pred             ccccccceEEcc----CCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCc------------cCc
Q 017371          159 KLRFANDVVEAS----DGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF------------YFA  221 (372)
Q Consensus       159 ~~~~~~~l~~d~----dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~------------~~~  221 (372)
                        ..+.++++++    ||+ +|+++.                 ..+.|..+|..+++........            ..+
T Consensus       222 --~~p~~va~sp~~~~dg~~l~v~~~-----------------~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v  282 (543)
T 1nir_A          222 --IEARSVESSKFKGYEDRYTIAGAY-----------------WPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRV  282 (543)
T ss_dssp             --SEEEEEEECCSTTCTTTEEEEEEE-----------------ESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCE
T ss_pred             --CCcceEEeCCCcCCCCCEEEEEEc-----------------cCCeEEEEeccccccceeecccCcccCccccccCCce
Confidence              3578999999    885 677643                 3567888998887765443221            134


Q ss_pred             ceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCC-EEEEEecCchhHHHHhhcchhHH
Q 017371          222 NGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIK  300 (372)
Q Consensus       222 ~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~r  300 (372)
                      .+++++++++.+|++....+.|+.++....+......+.  ...+|.+++++++|+ ++++...                
T Consensus       283 ~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~--~~~~~~~~~~spdg~~l~va~~~----------------  344 (543)
T 1nir_A          283 AAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG--AAPFLHDGGWDSSHRYFMTAANN----------------  344 (543)
T ss_dssp             EEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE--CCSSCCCEEECTTSCEEEEEEGG----------------
T ss_pred             EEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec--cCcCccCceECCCCCEEEEEecC----------------
Confidence            578999999999999998999999998654322211221  234689999999998 5666654                


Q ss_pred             HHHHhcCccccccccCCCceEEEEECC-CCcEEEEEECCCCCeeccceeeEE-ECCEEEEEeC-CCCeEEEEeCC
Q 017371          301 HVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQ-VDNHLYVISL-TSNFIGKVQLS  372 (372)
Q Consensus       301 ~~~~~~p~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~-~~g~L~igs~-~~~~i~~~~~~  372 (372)
                                        .+.|..+|. +|+++..+.............+.. +++.+|+.+. ..+.|.+++++
T Consensus       345 ------------------~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~  401 (543)
T 1nir_A          345 ------------------SNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTD  401 (543)
T ss_dssp             ------------------GTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECC
T ss_pred             ------------------CCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeC
Confidence                              346777884 588887776421111111122222 2488998874 56889998864

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.37  E-value=7e-10  Score=103.85  Aligned_cols=214  Identities=16%  Similarity=0.191  Sum_probs=145.9

Q ss_pred             cEEEEe-cCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCC-EEEEeCC-CcEEEEc-CCC-c-EEEeeecCCccccc
Q 017371           91 VIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA-NGLHKVS-EDG-V-ENFLSYVNGSKLRF  162 (372)
Q Consensus        91 ~l~v~~-~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~-l~v~~~~-~gv~~~~-~~g-~-~~l~~~~~~~~~~~  162 (372)
                      .+|++. .++.|..++  +++..........+. +++++++|+ ||++... ..|..++ .++ . ..+..  .    ..
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~--~----~~   75 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPVGSNPM-GAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA--G----SS   75 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSSSEE-EEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC--S----SS
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeecCCCcc-eEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEEC--C----CC
Confidence            466665 688899999  566544444455677 999999997 5676533 4588888 566 2 22211  1    25


Q ss_pred             ccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCCCC
Q 017371          163 ANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKF  241 (372)
Q Consensus       163 ~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~  241 (372)
                      +..++++++|+ ||++..                 ..+.|+.+|..+++..........+.++++++|++.+|++...++
T Consensus        76 v~~~~~spdg~~l~~~~~-----------------~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~  138 (391)
T 1l0q_A           76 PQGVAVSPDGKQVYVTNM-----------------ASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDK  138 (391)
T ss_dssp             EEEEEECTTSSEEEEEET-----------------TTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTT
T ss_pred             ccceEECCCCCEEEEEEC-----------------CCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCC
Confidence            67899999996 777643                 457899999998887666555566789999999999999988888


Q ss_pred             eEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCC-EEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCce
Q 017371          242 RCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGA  320 (372)
Q Consensus       242 ~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~  320 (372)
                      .|+.+++.+.+.  ...+.  ....|..++++++|+ +|++...                                  .+
T Consensus       139 ~v~~~d~~~~~~--~~~~~--~~~~~~~~~~~~dg~~l~~~~~~----------------------------------~~  180 (391)
T 1l0q_A          139 TVSVINTVTKAV--INTVS--VGRSPKGIAVTPDGTKVYVANFD----------------------------------SM  180 (391)
T ss_dssp             EEEEEETTTTEE--EEEEE--CCSSEEEEEECTTSSEEEEEETT----------------------------------TT
T ss_pred             EEEEEECCCCcE--EEEEe--cCCCcceEEECCCCCEEEEEeCC----------------------------------CC
Confidence            999999865321  11221  223478899999995 6676654                                  45


Q ss_pred             EEEEECCC-CcEEEEEECCCCCeeccceeeEEE--CCEEEEEeC--CCCeEEEEeC
Q 017371          321 HLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQV--DNHLYVISL--TSNFIGKVQL  371 (372)
Q Consensus       321 ~v~~~~~~-g~~~~~~~~~~g~~~~~~t~~~~~--~g~L~igs~--~~~~i~~~~~  371 (372)
                      .|..+|.+ ++.+..+....     .+.++...  +..||+++.  ....|.++++
T Consensus       181 ~v~~~d~~~~~~~~~~~~~~-----~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~  231 (391)
T 1l0q_A          181 SISVIDTVTNSVIDTVKVEA-----APSGIAVNPEGTKAYVTNVDKYFNTVSMIDT  231 (391)
T ss_dssp             EEEEEETTTTEEEEEEECSS-----EEEEEEECTTSSEEEEEEECSSCCEEEEEET
T ss_pred             EEEEEECCCCeEEEEEecCC-----CccceEECCCCCEEEEEecCcCCCcEEEEEC
Confidence            67777754 55555554321     34555554  357888876  5677777765

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=99.33  E-value=8.5e-11  Score=109.62  Aligned_cols=165  Identities=13%  Similarity=0.104  Sum_probs=107.1

Q ss_pred             ceEEEEecCCCcccCeEEcCCCC-EEEEeCCCcEEEEcCCC-cE-EEeee--cCCcccccccceEEcc----CCcEEEEe
Q 017371          108 TWVNWKFIDSQTLVGLTSTKEGH-LIICDNANGLHKVSEDG-VE-NFLSY--VNGSKLRFANDVVEAS----DGSLYFTV  178 (372)
Q Consensus       108 ~~~~~~~~~~~p~~gl~~d~dG~-l~v~~~~~gv~~~~~~g-~~-~l~~~--~~~~~~~~~~~l~~d~----dG~i~vtd  178 (372)
                      +++.+......|. +|+++++|+ |||++....|++++.+| .. .+...  ........+.+|++++    +|.||+++
T Consensus         9 ~~~~va~~l~~P~-~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~   87 (353)
T 2g8s_A            9 NVEVLQDKLDHPW-ALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSY   87 (353)
T ss_dssp             EEEEEEEEESSEE-EEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEE
T ss_pred             EEEEEECCCCCcE-EEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEE
Confidence            4556666677899 999999999 99999766688888666 32 22211  1111123567999998    58999986


Q ss_pred             CCCCCCCcccccccccccCCCeEEEEeCCCC-----eEEEEeCC-------ccCcceEEEecCCCEEEEEeCC-------
Q 017371          179 SSSKYLPHEYCLDILEGKPHGQLLKYDPSSN-----ITTLVADG-------FYFANGVALSRDEDYVVVCESW-------  239 (372)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~-----~~~~~~~~-------~~~~~gi~~~~dg~~l~v~~~~-------  239 (372)
                      ....          ..+....+|++++.+.+     ..+++...       .+.++++++++|| .||++...       
T Consensus        88 ~~~~----------~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~Gd~~~~~~~  156 (353)
T 2g8s_A           88 SEVG----------DDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG-YLFIALGENNQRPTA  156 (353)
T ss_dssp             EEEC----------SSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS-EEEEEECCTTCGGGG
T ss_pred             eCCC----------CCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC-cEEEEECCCCCCCcc
Confidence            4200          00001347888865432     23334322       3457899999999 69999632       


Q ss_pred             ------CCeEEEEEccCCCC----------cceeeeccCCCCCCceeEEcC-CCCEEEEEecC
Q 017371          240 ------KFRCRKYWLKGERK----------GKLETFAENLPGAPDNINLAP-DGTFWIAIIKL  285 (372)
Q Consensus       240 ------~~~i~~~~~~g~~~----------~~~~~~~~~~~g~p~~i~~d~-~G~lwva~~~~  285 (372)
                            ..+|+|++.+|...          ...+.+...+ ..|.++++|+ +|+||+++...
T Consensus       157 q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d~g~  218 (353)
T 2g8s_A          157 QDLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNEHGP  218 (353)
T ss_dssp             GCTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEEECS
T ss_pred             CCCCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEecCC
Confidence                  35899999987410          0223343222 2489999999 89999999873

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=99.32  E-value=1.3e-10  Score=111.77  Aligned_cols=168  Identities=16%  Similarity=0.242  Sum_probs=110.0

Q ss_pred             CceEecCCCCCCCccEEEcCCCc--EEEEecCCeEEEEe-CCce--EEE-------Eec-----CCCcccCeEEcCC---
Q 017371           69 DFIKVGEGSVNHPEDASMDKNGV--IYTATRDGWIKRLQ-DGTW--VNW-------KFI-----DSQTLVGLTSTKE---  128 (372)
Q Consensus        69 ~~~~~~~g~~~~p~~i~~d~~G~--l~v~~~~g~i~~~~-~g~~--~~~-------~~~-----~~~p~~gl~~d~d---  128 (372)
                      .++++.+| |..|..|++.++|.  |||+...|+|+.++ +|..  +.+       ...     .+..+ ||+++|+   
T Consensus         5 ~v~~va~g-L~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gll-gia~~P~f~~   82 (463)
T 2wg3_C            5 CIQEVVSG-LRQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLL-SLAFHPNYKK   82 (463)
T ss_dssp             EEEEEEEE-ESSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEE-EEEECTTHHH
T ss_pred             EEEEeccC-CCCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcce-eeEeCCCCcC
Confidence            35566666 88999999999985  99999999999998 5532  111       111     23456 9999985   


Q ss_pred             -CCEEEEeCC-------------CcEEEEc-CC--------C-cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCC
Q 017371          129 -GHLIICDNA-------------NGLHKVS-ED--------G-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYL  184 (372)
Q Consensus       129 -G~l~v~~~~-------------~gv~~~~-~~--------g-~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~  184 (372)
                       |.|||+...             ..|.++. .+        . .+++.........+....|++++||+|||+....-..
T Consensus        83 n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~  162 (463)
T 2wg3_C           83 NGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMIT  162 (463)
T ss_dssp             HCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCC
T ss_pred             CCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCC
Confidence             889998431             2466665 21        1 2344432222334667789999999999986531100


Q ss_pred             CcccccccccccCCCeEEEEeCCCC--------------------eEEEEeCCccCcceEEEecCC-----C-EEEEEeC
Q 017371          185 PHEYCLDILEGKPHGQLLKYDPSSN--------------------ITTLVADGFYFANGVALSRDE-----D-YVVVCES  238 (372)
Q Consensus       185 ~~~~~~~~~~~~~~g~v~~~d~~t~--------------------~~~~~~~~~~~~~gi~~~~dg-----~-~l~v~~~  238 (372)
                      ..............|.|+|+|+++.                    ..++++.++.+|.|++|+++.     + ++|.+|.
T Consensus       163 ~~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~dp~tg~~~G~l~~~~~D~  242 (463)
T 2wg3_C          163 LDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRHPTDININLTILCSDS  242 (463)
T ss_dssp             HHHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEESSCSSTTCSEEEEEECC
T ss_pred             CCccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEECCCCCCcccceEEEeccc
Confidence            0000000011234689999999853                    346788999999999999972     2 5777775

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.31  E-value=1.3e-09  Score=103.46  Aligned_cols=248  Identities=10%  Similarity=0.067  Sum_probs=161.4

Q ss_pred             CCccEEEcCCCcEEEEe-cCCeEEEEe--CCce-EEEEecCCCcccCeEEcCCCC-EEEEeCC-CcEEEEc-CCC-cEEE
Q 017371           80 HPEDASMDKNGVIYTAT-RDGWIKRLQ--DGTW-VNWKFIDSQTLVGLTSTKEGH-LIICDNA-NGLHKVS-EDG-VENF  151 (372)
Q Consensus        80 ~p~~i~~d~~G~l~v~~-~~g~i~~~~--~g~~-~~~~~~~~~p~~gl~~d~dG~-l~v~~~~-~gv~~~~-~~g-~~~l  151 (372)
                      ...++++.++|.+|++. .++.|..|+  +++. ..+......+. +++++++|+ +|++... ..+..++ .++ ....
T Consensus       171 ~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~  249 (433)
T 3bws_A          171 FVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSK-ILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRK  249 (433)
T ss_dssp             EEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEE-EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCee-EEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEE
Confidence            34568888899888877 689999999  4443 33433445677 999999986 5566643 4588888 566 2211


Q ss_pred             eeecCCcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCC
Q 017371          152 LSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDE  230 (372)
Q Consensus       152 ~~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg  230 (372)
                      .   ..  ...+..++++++|+ +|++......          ....++.|+.+|..+++..........+.++++++++
T Consensus       250 ~---~~--~~~~~~~~~~~~g~~l~~~~~~~~~----------~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g  314 (433)
T 3bws_A          250 T---DK--IGLPRGLLLSKDGKELYIAQFSASN----------QESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTE  314 (433)
T ss_dssp             C---CC--CSEEEEEEECTTSSEEEEEEEESCT----------TCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSST
T ss_pred             e---cC--CCCceEEEEcCCCCEEEEEECCCCc----------cccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCC
Confidence            1   11  12477899999995 5555321000          0013678999999888765554333467789999999


Q ss_pred             CEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCC-EEEEEecCchhHHHHhhcchhHHHHHHhcCcc
Q 017371          231 DYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKL  309 (372)
Q Consensus       231 ~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~  309 (372)
                      +.+|++...++.|..|++++.+..  ..+.  ....+..++++++|+ +|++.......                    .
T Consensus       315 ~~l~~~~~~~~~v~v~d~~~~~~~--~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~~--------------------~  370 (433)
T 3bws_A          315 NKIYVSDMCCSKIEVYDLKEKKVQ--KSIP--VFDKPNTIALSPDGKYLYVSCRGPNHP--------------------T  370 (433)
T ss_dssp             TEEEEEETTTTEEEEEETTTTEEE--EEEE--CSSSEEEEEECTTSSEEEEEECCCCCT--------------------T
T ss_pred             CEEEEEecCCCEEEEEECCCCcEE--EEec--CCCCCCeEEEcCCCCEEEEEecCCCcc--------------------c
Confidence            999999888899999998753211  1221  234578999999996 77776541100                    0


Q ss_pred             ccccccCCCceEEEEECC-CCcEEEEEECCCCCeeccceeeEEE--CCEEEEEeCCCCeEEEEeCC
Q 017371          310 FSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQV--DNHLYVISLTSNFIGKVQLS  372 (372)
Q Consensus       310 ~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~--~g~L~igs~~~~~i~~~~~~  372 (372)
                      -..+......+.|..+|. +++.+..+....     .+.++...  +..|++++...+.|.+++++
T Consensus       371 ~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~  431 (433)
T 3bws_A          371 EGYLKKGLVLGKVYVIDTTTDTVKEFWEAGN-----QPTGLDVSPDNRYLVISDFLDHQIRVYRRD  431 (433)
T ss_dssp             TCTTSCCSSCCEEEEEETTTTEEEEEEECSS-----SEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred             cccccccccceEEEEEECCCCcEEEEecCCC-----CCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence            000111233568888885 577777776521     35667765  35788888778899988764

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.31  E-value=2.9e-09  Score=99.39  Aligned_cols=184  Identities=11%  Similarity=0.068  Sum_probs=107.3

Q ss_pred             cEEEEec--CCeEEEEe----CCceEEEEe----cCCCcccCeEEcCCCC-EEEEeCCCcEEEEc-C-CC-cEEEeee-c
Q 017371           91 VIYTATR--DGWIKRLQ----DGTWVNWKF----IDSQTLVGLTSTKEGH-LIICDNANGLHKVS-E-DG-VENFLSY-V  155 (372)
Q Consensus        91 ~l~v~~~--~g~i~~~~----~g~~~~~~~----~~~~p~~gl~~d~dG~-l~v~~~~~gv~~~~-~-~g-~~~l~~~-~  155 (372)
                      .+|+|+.  .+.|+.++    +|+.+.+..    ....|. ++++++||+ ||+++.. .+..++ . +| ...+... .
T Consensus         4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~-~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~   81 (365)
T 1jof_A            4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPIS-WMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPI   81 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCS-EEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEEC
T ss_pred             EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCc-EEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeec
Confidence            5788884  25677654    566655433    223677 999999997 7787765 777777 4 67 4333221 1


Q ss_pred             CCcccccccceEEccCCc-EEEEeCC-CCCCCcccccccccccCCCeEEEEeCCCCeEEEEe-----CCccCcceEEEec
Q 017371          156 NGSKLRFANDVVEASDGS-LYFTVSS-SKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-----DGFYFANGVALSR  228 (372)
Q Consensus       156 ~~~~~~~~~~l~~d~dG~-i~vtd~~-~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~-----~~~~~~~gi~~~~  228 (372)
                      .+    .+..+++++||+ +|+...+ .++.  .+............+|.++.+ ++.....     .....+.+++++|
T Consensus        82 ~g----~~~~~~~spdg~~l~~~~~~~~~~~--~~~~~~~~~~g~v~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~sp  154 (365)
T 1jof_A           82 GG----HPRANDADTNTRAIFLLAAKQPPYA--VYANPFYKFAGYGNVFSVSET-GKLEKNVQNYEYQENTGIHGMVFDP  154 (365)
T ss_dssp             CS----SGGGGCTTSCCEEEEEEECSSTTCC--EEEEEESSSCCEEEEEEECTT-CCEEEEEEEEECCTTCCEEEEEECT
T ss_pred             CC----CCccEEECCCCCEEEEEEecCCcce--eccceeecCCceEEEEccCCC-CcCcceEeeEEeCCCCcceEEEECC
Confidence            12    366799999998 2432111 0000  000000001122344555433 5443222     2345788999999


Q ss_pred             CCCEEEEEeCCCCeEEEEEcc-CCCCcceeeecc-CCCCCCceeEEcCCCC-EEEEEe
Q 017371          229 DEDYVVVCESWKFRCRKYWLK-GERKGKLETFAE-NLPGAPDNINLAPDGT-FWIAII  283 (372)
Q Consensus       229 dg~~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~-~~~g~p~~i~~d~~G~-lwva~~  283 (372)
                      ||+++|+++.+.++|+.|+++ +.+......+.. .....|.++++++||+ +|++..
T Consensus       155 dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~  212 (365)
T 1jof_A          155 TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALME  212 (365)
T ss_dssp             TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEET
T ss_pred             CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEEC
Confidence            999999999888899999986 333222122210 1123589999999995 777764

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.31  E-value=2.8e-10  Score=101.09  Aligned_cols=152  Identities=11%  Similarity=0.032  Sum_probs=108.5

Q ss_pred             CCCCccEEEcCCCcEEEEe-cCCeEEEEe--CCceEEEEecCCCcccCeEEcCCC-CEEEEeCCCcEEEEc-CCC--cEE
Q 017371           78 VNHPEDASMDKNGVIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEG-HLIICDNANGLHKVS-EDG--VEN  150 (372)
Q Consensus        78 ~~~p~~i~~d~~G~l~v~~-~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG-~l~v~~~~~gv~~~~-~~g--~~~  150 (372)
                      -..+++++.+ +++||+++ .++.+..+|  +.+...-.... .+. |..+.+|| +||+++....|..+| .+.  ...
T Consensus        65 ~~fgeGi~~~-g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g-~~~-g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~  141 (266)
T 2iwa_A           65 SYFGEGLTLL-NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ-MKD-GWGLATDGKILYGSDGTSILYEIDPHTFKLIKK  141 (266)
T ss_dssp             TCCEEEEEEE-TTEEEEEETTCSEEEEEETTTTEEEEEEECC-SSS-CCEEEECSSSEEEECSSSEEEEECTTTCCEEEE
T ss_pred             CcceEEEEEe-CCEEEEEEecCCEEEEEECCCCcEEEEEECC-CCC-eEEEEECCCEEEEECCCCeEEEEECCCCcEEEE
Confidence            3467788887 46999999 688999999  45433322233 333 44444454 799998656799999 443  333


Q ss_pred             EeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeC--Cc----------
Q 017371          151 FLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD--GF----------  218 (372)
Q Consensus       151 l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~--~~----------  218 (372)
                      +.-...+.+...+|.+.+. +|++|++..                 ..+.|.++|++++++.....  ++          
T Consensus       142 I~Vg~~~~p~~~~nele~~-dg~lyvn~~-----------------~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~  203 (266)
T 2iwa_A          142 HNVKYNGHRVIRLNELEYI-NGEVWANIW-----------------QTDCIARISAKDGTLLGWILLPNLRKKLIDEGFR  203 (266)
T ss_dssp             EECEETTEECCCEEEEEEE-TTEEEEEET-----------------TSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCT
T ss_pred             EEECCCCcccccceeEEEE-CCEEEEecC-----------------CCCeEEEEECCCCcEEEEEECCCccccccccccc
Confidence            3333234455578888887 899999764                 35789999999998765442  22          


Q ss_pred             --cCcceEEEecCCCEEEEEeCCCCeEEEEEccC
Q 017371          219 --YFANGVALSRDEDYVVVCESWKFRCRKYWLKG  250 (372)
Q Consensus       219 --~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g  250 (372)
                        ..||||+++++++.+||+.....+|+.+++..
T Consensus       204 ~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~  237 (266)
T 2iwa_A          204 DIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL  237 (266)
T ss_dssp             TCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred             ccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence              35799999999999999999889999998753

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.30  E-value=7.9e-10  Score=102.66  Aligned_cols=185  Identities=16%  Similarity=0.184  Sum_probs=116.5

Q ss_pred             CCCccEEEcCCCcEEEEe-cCCeEEEEe---CCceEE----EEecC----------CCcccCeEEcCCCC-EEEEeCC-C
Q 017371           79 NHPEDASMDKNGVIYTAT-RDGWIKRLQ---DGTWVN----WKFID----------SQTLVGLTSTKEGH-LIICDNA-N  138 (372)
Q Consensus        79 ~~p~~i~~d~~G~l~v~~-~~g~i~~~~---~g~~~~----~~~~~----------~~p~~gl~~d~dG~-l~v~~~~-~  138 (372)
                      ..|..+++ .+..||+++ .++.|..++   ++.+..    .....          ..+. +++++|||+ ||+++.. .
T Consensus       100 ~~p~~~~~-dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~spdg~~l~~~~~~~~  177 (361)
T 3scy_A          100 ADPCYLTT-NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLH-CVRITPDGKYLLADDLGTD  177 (361)
T ss_dssp             SCEEEEEE-CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEE-EEEECTTSSEEEEEETTTT
T ss_pred             CCcEEEEE-CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcce-EEEECCCCCEEEEEeCCCC
Confidence            47888888 344688888 678888887   343221    11111          1235 799999997 8888764 3


Q ss_pred             cEEEEc-C--CC------cEEE--eeecCCcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeC
Q 017371          139 GLHKVS-E--DG------VENF--LSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDP  206 (372)
Q Consensus       139 gv~~~~-~--~g------~~~l--~~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~  206 (372)
                      .+..++ .  .+      +...  ...........+.++++++||+ +|+++.                 ..+.|..+|.
T Consensus       178 ~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~-----------------~~~~v~v~~~  240 (361)
T 3scy_A          178 QIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINE-----------------IGGTVIAFRY  240 (361)
T ss_dssp             EEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET-----------------TTCEEEEEEE
T ss_pred             EEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcC-----------------CCCeEEEEEe
Confidence            455554 2  22      1111  0011111124577899999996 777653                 3567888877


Q ss_pred             CCCeEEEEeC------CccCcceEEEecCCCEEEEEeCC-CCeEEEEEcc--CCCCcceeeeccCCCCCCceeEEcCCCC
Q 017371          207 SSNITTLVAD------GFYFANGVALSRDEDYVVVCESW-KFRCRKYWLK--GERKGKLETFAENLPGAPDNINLAPDGT  277 (372)
Q Consensus       207 ~t~~~~~~~~------~~~~~~gi~~~~dg~~l~v~~~~-~~~i~~~~~~--g~~~~~~~~~~~~~~g~p~~i~~d~~G~  277 (372)
                      ++++.+.+..      ....+.+++++|||++||+++.. .+.|..|+++  +.+......+. . ...|.++++++||+
T Consensus       241 ~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~-~-g~~~~~~~~spdg~  318 (361)
T 3scy_A          241 ADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQL-T-GIHPRNFIITPNGK  318 (361)
T ss_dssp             ETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEE-C-SSCCCEEEECTTSC
T ss_pred             cCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEec-C-CCCCceEEECCCCC
Confidence            6676654321      22346689999999999999987 7788888875  22222222222 2 34689999999997


Q ss_pred             -EEEEEec
Q 017371          278 -FWIAIIK  284 (372)
Q Consensus       278 -lwva~~~  284 (372)
                       ||++...
T Consensus       319 ~l~~~~~~  326 (361)
T 3scy_A          319 YLLVACRD  326 (361)
T ss_dssp             EEEEEETT
T ss_pred             EEEEEECC
Confidence             7777643

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.27  E-value=1.9e-09  Score=102.27  Aligned_cols=219  Identities=12%  Similarity=0.082  Sum_probs=148.5

Q ss_pred             CCccEEEcCCCcEEEEe-cCCeEEEEe--CCceEEEEe------cCCCcccCeEEcCCCCEEEEeCC-CcEEEEc-CCC-
Q 017371           80 HPEDASMDKNGVIYTAT-RDGWIKRLQ--DGTWVNWKF------IDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG-  147 (372)
Q Consensus        80 ~p~~i~~d~~G~l~v~~-~~g~i~~~~--~g~~~~~~~------~~~~p~~gl~~d~dG~l~v~~~~-~gv~~~~-~~g-  147 (372)
                      .|.++++++++.+|++. .++.|..++  +++......      ..+... ++++.++|++|++... ..+..++ .++ 
T Consensus       124 ~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~s~~~d~~v~~~d~~~~~  202 (433)
T 3bws_A          124 QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVE-TISIPEHNELWVSQMQANAVHVFDLKTLA  202 (433)
T ss_dssp             CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEE-EEEEGGGTEEEEEEGGGTEEEEEETTTCC
T ss_pred             CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCcee-EEEEcCCCEEEEEECCCCEEEEEECCCce
Confidence            57789999988888887 567899999  565543221      112345 7899999999988765 4577788 555 


Q ss_pred             -cEEEeeecCCcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEE
Q 017371          148 -VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVA  225 (372)
Q Consensus       148 -~~~l~~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~  225 (372)
                       ...+..  .   ...+..++++++|+ +|++..                 ..+.|+.+|..+++..........+.+++
T Consensus       203 ~~~~~~~--~---~~~~~~~~~~~~~~~l~~~~~-----------------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~  260 (433)
T 3bws_A          203 YKATVDL--T---GKWSKILLYDPIRDLVYCSNW-----------------ISEDISVIDRKTKLEIRKTDKIGLPRGLL  260 (433)
T ss_dssp             EEEEEEC--S---SSSEEEEEEETTTTEEEEEET-----------------TTTEEEEEETTTTEEEEECCCCSEEEEEE
T ss_pred             EEEEEcC--C---CCCeeEEEEcCCCCEEEEEec-----------------CCCcEEEEECCCCcEEEEecCCCCceEEE
Confidence             333321  1   13567899999986 556543                 46789999998887766555555688999


Q ss_pred             EecCCCEEEEEeC-------CCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCC-EEEEEecCchhHHHHhhcch
Q 017371          226 LSRDEDYVVVCES-------WKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSK  297 (372)
Q Consensus       226 ~~~dg~~l~v~~~-------~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwva~~~~~~~~~~~~~~~~  297 (372)
                      ++|+++.++++..       .++.|+.+++.+.+...  ..  ..++.+.+++++++|+ +|++...             
T Consensus       261 ~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~--~~--~~~~~~~~~~~~~~g~~l~~~~~~-------------  323 (433)
T 3bws_A          261 LSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLID--TI--GPPGNKRHIVSGNTENKIYVSDMC-------------  323 (433)
T ss_dssp             ECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEE--EE--EEEECEEEEEECSSTTEEEEEETT-------------
T ss_pred             EcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEe--ec--cCCCCcceEEECCCCCEEEEEecC-------------
Confidence            9999998998874       34578889886542211  11  1123477899999995 7777655             


Q ss_pred             hHHHHHHhcCccccccccCCCceEEEEECCC-CcEEEEEECCCCCeeccceeeEEE--CCEEEEEeCCCC
Q 017371          298 LIKHVLAAYPKLFSQFITLGGGAHLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQV--DNHLYVISLTSN  364 (372)
Q Consensus       298 ~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~-g~~~~~~~~~~g~~~~~~t~~~~~--~g~L~igs~~~~  364 (372)
                                           .+.+..++.+ ++.+..+....     .+.++...  +..||+++...+
T Consensus       324 ---------------------~~~v~v~d~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~~~~~~~~  367 (433)
T 3bws_A          324 ---------------------CSKIEVYDLKEKKVQKSIPVFD-----KPNTIALSPDGKYLYVSCRGPN  367 (433)
T ss_dssp             ---------------------TTEEEEEETTTTEEEEEEECSS-----SEEEEEECTTSSEEEEEECCCC
T ss_pred             ---------------------CCEEEEEECCCCcEEEEecCCC-----CCCeEEEcCCCCEEEEEecCCC
Confidence                                 4577778754 66666665322     35566665  346888887654

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.26  E-value=2.8e-09  Score=105.17  Aligned_cols=234  Identities=15%  Similarity=0.104  Sum_probs=149.1

Q ss_pred             CCccEEEcCCC-cEEEEecCCeEEEEe-C-C--ceEEEEecCCCcccCeEEcC----CCC-EEEEeC-CCcEEEEc-CCC
Q 017371           80 HPEDASMDKNG-VIYTATRDGWIKRLQ-D-G--TWVNWKFIDSQTLVGLTSTK----EGH-LIICDN-ANGLHKVS-EDG  147 (372)
Q Consensus        80 ~p~~i~~d~~G-~l~v~~~~g~i~~~~-~-g--~~~~~~~~~~~p~~gl~~d~----dG~-l~v~~~-~~gv~~~~-~~g  147 (372)
                      .|++++++++| .||+++.++.|..|| . .  +.......+..|. ++++++    ||+ ||+++. ...+..+| .++
T Consensus       180 ~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~-~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~  258 (543)
T 1nir_A          180 AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEAR-SVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL  258 (543)
T ss_dssp             TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEE-EEEECCSTTCTTTEEEEEEEESSEEEEEETTTC
T ss_pred             ccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcc-eEEeCCCcCCCCCEEEEEEccCCeEEEEecccc
Confidence            38899999998 688998889999999 3 3  3222223456788 999999    986 777764 35688888 555


Q ss_pred             --cEEEeee---cCCc---ccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEE--EeC
Q 017371          148 --VENFLSY---VNGS---KLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL--VAD  216 (372)
Q Consensus       148 --~~~l~~~---~~~~---~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~--~~~  216 (372)
                        +..+...   ..+.   +...+..+++++++. +|++..                 ..+.|+.+|..+.+...  ...
T Consensus       259 ~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~-----------------~~g~i~vvd~~~~~~l~~~~i~  321 (543)
T 1nir_A          259 EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK-----------------ETGKVLLVNYKDIDNLTVTSIG  321 (543)
T ss_dssp             CEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET-----------------TTTEEEEEECTTSSSCEEEEEE
T ss_pred             ccceeecccCcccCccccccCCceEEEEECCCCCEEEEEEC-----------------CCCeEEEEEecCCCcceeEEec
Confidence              4433321   0110   112456788888775 555432                 57899999987543211  122


Q ss_pred             CccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCC---ceeE-EcCC-CCEEEEEecCchhHHH
Q 017371          217 GFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAP---DNIN-LAPD-GTFWIAIIKLDARRMK  291 (372)
Q Consensus       217 ~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p---~~i~-~d~~-G~lwva~~~~~~~~~~  291 (372)
                      .-.++.+++|+|||+++|++....+.|..++..+.+...  .+ .. ...|   .+.. .+++ |.+|++....      
T Consensus       322 ~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~--~i-~~-g~~ph~g~g~~~~~p~~g~~~~s~~~~------  391 (543)
T 1nir_A          322 AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSA--LV-DV-GKTPHPGRGANFVHPKYGPVWSTSHLG------  391 (543)
T ss_dssp             CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEE--EE-EC-SSSBCCTTCEEEEETTTEEEEEEEBSS------
T ss_pred             cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEE--ee-cc-CCCCCCCCCcccCCCCCccEEEeccCC------
Confidence            345788999999999999998888899999986543221  11 11 1112   2333 4666 7899887521      


Q ss_pred             HhhcchhHHHHHHhcCccccccccCCCceEEEEEC--CC------CcEEEEEECCCCCeeccceeeEEE--CCEEEEEeC
Q 017371          292 ILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVA--ED------GTIIRNLVDPTGQLMSFVTSGLQV--DNHLYVISL  361 (372)
Q Consensus       292 ~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~--~~------g~~~~~~~~~~g~~~~~~t~~~~~--~g~L~igs~  361 (372)
                                                 .+.|..++  +.      ++.++.+....+.    +..+..+  +.+||+++.
T Consensus       392 ---------------------------d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~----~~~v~~~pdg~~l~v~~~  440 (543)
T 1nir_A          392 ---------------------------DGSISLIGTDPKNHPQYAWKKVAELQGQGGG----SLFIKTHPKSSHLYVDTT  440 (543)
T ss_dssp             ---------------------------SSEEEEEECCTTTCTTTBTSEEEEEECSCSC----CCCEECCTTCCEEEECCT
T ss_pred             ---------------------------CceEEEEEeCCCCCchhcCeEEEEEEcCCCC----ceEEEcCCCCCcEEEecC
Confidence                                       23455554  31      6888888765432    2334443  578999874


Q ss_pred             C------CCeEEEEeCC
Q 017371          362 T------SNFIGKVQLS  372 (372)
Q Consensus       362 ~------~~~i~~~~~~  372 (372)
                      .      .+.|.+++++
T Consensus       441 ~~~~~~~~~~v~v~d~~  457 (543)
T 1nir_A          441 FNPDARISQSVAVFDLK  457 (543)
T ss_dssp             TCSSHHHHTCEEEEETT
T ss_pred             CCCCcccCceEEEEECC
Confidence            2      4489998863

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.26  E-value=9.8e-10  Score=96.68  Aligned_cols=148  Identities=21%  Similarity=0.190  Sum_probs=107.4

Q ss_pred             CccEEEcCCCcEEEEe-cCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCCEEEEeCCCcEEEEc-CCC--cEEEeee
Q 017371           81 PEDASMDKNGVIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG--VENFLSY  154 (372)
Q Consensus        81 p~~i~~d~~G~l~v~~-~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~-~~g--~~~l~~~  154 (372)
                      .++++.+ +++||+.+ .++.++.+|  +.+...-....+... |++.| .+.||+++....|..+| .+.  ...+.-.
T Consensus        89 geGit~~-g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG~-glt~d-g~~L~~SdGs~~i~~iDp~T~~v~~~I~V~  165 (262)
T 3nol_A           89 GEGISDW-KDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEGW-GLTHN-DQYLIMSDGTPVLRFLDPESLTPVRTITVT  165 (262)
T ss_dssp             EEEEEEE-TTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCC-CEEEC-SSCEEECCSSSEEEEECTTTCSEEEEEECE
T ss_pred             eeEEEEe-CCEEEEEEeeCCEEEEEECccCcEEEEEECCCCce-EEecC-CCEEEEECCCCeEEEEcCCCCeEEEEEEec
Confidence            4778887 45999999 688999999  455433223345667 88876 36899998666799999 444  3333333


Q ss_pred             cCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCC--c-----------cCc
Q 017371          155 VNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG--F-----------YFA  221 (372)
Q Consensus       155 ~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~--~-----------~~~  221 (372)
                      ..+.+...+|.+.+. +|+||+...                 ..+.|+++|+++|++....+-  +           ..+
T Consensus       166 ~~g~~~~~lNELe~~-~G~lyan~w-----------------~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vl  227 (262)
T 3nol_A          166 AHGEELPELNELEWV-DGEIFANVW-----------------QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVL  227 (262)
T ss_dssp             ETTEECCCEEEEEEE-TTEEEEEET-----------------TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCE
T ss_pred             cCCccccccceeEEE-CCEEEEEEc-----------------cCCeEEEEECCCCcEEEEEECCcCccccccccCcCCce
Confidence            345555677778776 899999764                 356899999999998664422  2           357


Q ss_pred             ceEEEecCCCEEEEEeCCCCeEEEEEcc
Q 017371          222 NGVALSRDEDYVVVCESWKFRCRKYWLK  249 (372)
Q Consensus       222 ~gi~~~~dg~~l~v~~~~~~~i~~~~~~  249 (372)
                      ||||++|+++.|||+.-.-.+++.+.+.
T Consensus       228 NGIA~dp~~~~lfVTGK~Wp~~~ev~~~  255 (262)
T 3nol_A          228 NGIAWDKEHHRLFVTGKLWPKVFEITLT  255 (262)
T ss_dssp             EEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred             EEEEEcCCCCEEEEECCCCCceEEEEEe
Confidence            9999999999999999877888887753

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.22  E-value=1.1e-09  Score=96.32  Aligned_cols=148  Identities=18%  Similarity=0.203  Sum_probs=107.8

Q ss_pred             CCccEEEcCCCcEEEEe-cCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCCEEEEeCCCcEEEEc-CCC--cEEEee
Q 017371           80 HPEDASMDKNGVIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG--VENFLS  153 (372)
Q Consensus        80 ~p~~i~~d~~G~l~v~~-~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~-~~g--~~~l~~  153 (372)
                      ..|+++.+. ++||+.+ .++.++.+|  +.+...-....+.+. |++.| .++||+++....+..+| .+.  ...+.-
T Consensus        97 FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eGw-GLt~D-g~~L~vSdGs~~l~~iDp~T~~v~~~I~V  173 (268)
T 3nok_A           97 FAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEGW-GLCYW-NGKLVRSDGGTMLTFHEPDGFALVGAVQV  173 (268)
T ss_dssp             CEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEEEECSSCCC-CEEEE-TTEEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred             ceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEEEeCCCcee-EEecC-CCEEEEECCCCEEEEEcCCCCeEEEEEEe
Confidence            347788874 5999999 688999999  555433233345677 88876 35899998666799999 444  333333


Q ss_pred             ecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCC--------------cc
Q 017371          154 YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG--------------FY  219 (372)
Q Consensus       154 ~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~--------------~~  219 (372)
                      ...+.+..++|.+.+. +|+||+...                 ..+.|.++|+++|++....+-              ..
T Consensus       174 ~~~g~~v~~lNeLe~~-dG~lyanvw-----------------~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~  235 (268)
T 3nok_A          174 KLRGQPVELINELECA-NGVIYANIW-----------------HSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEA  235 (268)
T ss_dssp             EETTEECCCEEEEEEE-TTEEEEEET-----------------TCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTC
T ss_pred             CCCCcccccccccEEe-CCEEEEEEC-----------------CCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCC
Confidence            3345556677888876 889999764                 356899999999987664321              13


Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEEc
Q 017371          220 FANGVALSRDEDYVVVCESWKFRCRKYWL  248 (372)
Q Consensus       220 ~~~gi~~~~dg~~l~v~~~~~~~i~~~~~  248 (372)
                      .+||||++++++.|||+.-.-.+++.+.+
T Consensus       236 vlNGIA~dp~~~rlfVTGK~Wp~~~ev~~  264 (268)
T 3nok_A          236 VLNGIAVEPGSGRIFMTGKLWPRLFEVRL  264 (268)
T ss_dssp             CEEEEEECTTTCCEEEEETTCSEEEEEEE
T ss_pred             ceEEEEEcCCCCEEEEeCCCCCceEEEEE
Confidence            57999999999999999887778887765

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.22  E-value=2.3e-09  Score=94.36  Aligned_cols=189  Identities=11%  Similarity=0.107  Sum_probs=127.4

Q ss_pred             CeEEcCCCCEEEEeCCC---cEEEEc-CCC--cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccc
Q 017371          122 GLTSTKEGHLIICDNAN---GLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEG  195 (372)
Q Consensus       122 gl~~d~dG~l~v~~~~~---gv~~~~-~~g--~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~  195 (372)
                      ||.++ +|.||+++...   .|.++| .+|  ...+.  .+.  ..+..+++++ +++||+.+.                
T Consensus        47 GL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~--l~~--~~FgeGit~~-g~~ly~ltw----------------  104 (262)
T 3nol_A           47 GFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIE--LGK--RYFGEGISDW-KDKIVGLTW----------------  104 (262)
T ss_dssp             EEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEE--CCT--TCCEEEEEEE-TTEEEEEES----------------
T ss_pred             eEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEe--cCC--ccceeEEEEe-CCEEEEEEe----------------
Confidence            89998 78999997553   488899 677  33332  121  2344567775 469999864                


Q ss_pred             cCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcce-eeeccCCC-CCCceeEEc
Q 017371          196 KPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKL-ETFAENLP-GAPDNINLA  273 (372)
Q Consensus       196 ~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~-~~~~~~~~-g~p~~i~~d  273 (372)
                       ..+.+++||+++.+...-...  .+.|..+++|++.||+++ +.++|+.+|..+.+.... .+-....+ ..++.+...
T Consensus       105 -~~~~v~v~D~~t~~~~~ti~~--~~eG~glt~dg~~L~~Sd-Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~  180 (262)
T 3nol_A          105 -KNGLGFVWNIRNLRQVRSFNY--DGEGWGLTHNDQYLIMSD-GTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV  180 (262)
T ss_dssp             -SSSEEEEEETTTCCEEEEEEC--SSCCCCEEECSSCEEECC-SSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE
T ss_pred             -eCCEEEEEECccCcEEEEEEC--CCCceEEecCCCEEEEEC-CCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE
Confidence             467899999988775543322  235666677888899998 478999999875432221 11111111 234456665


Q ss_pred             CCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEECC-CCcEEEEEECCCC--------Ceec
Q 017371          274 PDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTG--------QLMS  344 (372)
Q Consensus       274 ~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g--------~~~~  344 (372)
                       +|.+|+..+.                                  .+.|.++|+ +|+++..+....-        ...+
T Consensus       181 -~G~lyan~w~----------------------------------~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~  225 (262)
T 3nol_A          181 -DGEIFANVWQ----------------------------------TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPID  225 (262)
T ss_dssp             -TTEEEEEETT----------------------------------SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCC
T ss_pred             -CCEEEEEEcc----------------------------------CCeEEEEECCCCcEEEEEECCcCccccccccCcCC
Confidence             7899999876                                  468999996 5999998876421        1123


Q ss_pred             cceeeEEE--CCEEEEEeCCCCeEEEEeC
Q 017371          345 FVTSGLQV--DNHLYVISLTSNFIGKVQL  371 (372)
Q Consensus       345 ~~t~~~~~--~g~L~igs~~~~~i~~~~~  371 (372)
                      ...+++.+  .++||+..-.=+.+-.++|
T Consensus       226 vlNGIA~dp~~~~lfVTGK~Wp~~~ev~~  254 (262)
T 3nol_A          226 VLNGIAWDKEHHRLFVTGKLWPKVFEITL  254 (262)
T ss_dssp             CEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred             ceEEEEEcCCCCEEEEECCCCCceEEEEE
Confidence            45677877  4899999998888877764

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.20  E-value=3.4e-09  Score=92.45  Aligned_cols=149  Identities=18%  Similarity=0.102  Sum_probs=108.4

Q ss_pred             CCccEEEcCCCcEEEEe-cCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCCEEEEeCCCcEEEEc-CCC--cEEEee
Q 017371           80 HPEDASMDKNGVIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG--VENFLS  153 (372)
Q Consensus        80 ~p~~i~~d~~G~l~v~~-~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~-~~g--~~~l~~  153 (372)
                      ..++++.+ +++||+.+ .++.++.+|  +.+...-....+.+. |++.| .++||+++....|..+| .+.  ...+.-
T Consensus        66 fgeGi~~~-~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gw-glt~d-g~~L~vSdgs~~l~~iDp~t~~~~~~I~V  142 (243)
T 3mbr_X           66 FGAGIVAW-RDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEGW-ALTSD-DSHLYMSDGTAVIRKLDPDTLQQVGSIKV  142 (243)
T ss_dssp             CEEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEEEECSSCCC-EEEEC-SSCEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred             ceeEEEEe-CCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCce-EEeeC-CCEEEEECCCCeEEEEeCCCCeEEEEEEE
Confidence            45778887 46899999 688999999  454333233345667 77765 46899999767799999 444  333433


Q ss_pred             ecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeC--------------Ccc
Q 017371          154 YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD--------------GFY  219 (372)
Q Consensus       154 ~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~--------------~~~  219 (372)
                      ...+.+...+|.+... +|+||+...                 .+..|.++|+++|++.-..+              ...
T Consensus       143 ~~~g~~~~~lNeLe~~-~G~lyanvw-----------------~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~  204 (243)
T 3mbr_X          143 TAGGRPLDNLNELEWV-NGELLANVW-----------------LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTND  204 (243)
T ss_dssp             EETTEECCCEEEEEEE-TTEEEEEET-----------------TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSS
T ss_pred             ccCCcccccceeeEEe-CCEEEEEEC-----------------CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCC
Confidence            3345556677777765 899998754                 35689999999998766432              123


Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEEcc
Q 017371          220 FANGVALSRDEDYVVVCESWKFRCRKYWLK  249 (372)
Q Consensus       220 ~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~  249 (372)
                      .+||||++++++.|||+.-.-.+++.+.+.
T Consensus       205 vlNGIA~d~~~~~lfVTGK~wp~~~~v~~~  234 (243)
T 3mbr_X          205 VLNGIAFDAEHDRLFVTGKRWPMLYEIRLT  234 (243)
T ss_dssp             CEEEEEEETTTTEEEEEETTCSEEEEEEEC
T ss_pred             ceEEEEEcCCCCEEEEECCCCCcEEEEEEe
Confidence            579999999999999999877888888764

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.19  E-value=1.3e-08  Score=100.55  Aligned_cols=228  Identities=9%  Similarity=-0.055  Sum_probs=148.3

Q ss_pred             EcCCCcEEEEe-cCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCC-EEEEeCCCcEEEEc-C--CCcEEEeeecCCc
Q 017371           86 MDKNGVIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNANGLHKVS-E--DGVENFLSYVNGS  158 (372)
Q Consensus        86 ~d~~G~l~v~~-~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~-l~v~~~~~gv~~~~-~--~g~~~l~~~~~~~  158 (372)
                      .|+++.+|++. .++.|..+|  ++++......+..|. ++++++||+ +|+++....|..+| .  ++ +.+.....+ 
T Consensus       163 ~d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~-~v~~SpDGr~lyv~~~dg~V~viD~~~~t~-~~v~~i~~G-  239 (567)
T 1qks_A          163 WDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVH-ISRLSASGRYLFVIGRDGKVNMIDLWMKEP-TTVAEIKIG-  239 (567)
T ss_dssp             CCGGGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEE-EEEECTTSCEEEEEETTSEEEEEETTSSSC-CEEEEEECC-
T ss_pred             cCCCceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCcc-ceEECCCCCEEEEEcCCCeEEEEECCCCCC-cEeEEEecC-
Confidence            45566788888 688999999  566554445566788 999999996 78887656799999 4  33 222222122 


Q ss_pred             ccccccceEEc----cCC-cEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeC-Cc-----------cCc
Q 017371          159 KLRFANDVVEA----SDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-GF-----------YFA  221 (372)
Q Consensus       159 ~~~~~~~l~~d----~dG-~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~-~~-----------~~~  221 (372)
                        ..|.+++++    +|| .+|+++.                 ..+.|..+|..+.+...... ..           ...
T Consensus       240 --~~P~~ia~s~~~~pDGk~l~v~n~-----------------~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rv  300 (567)
T 1qks_A          240 --SEARSIETSKMEGWEDKYAIAGAY-----------------WPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRV  300 (567)
T ss_dssp             --SEEEEEEECCSTTCTTTEEEEEEE-----------------ETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCE
T ss_pred             --CCCceeEEccccCCCCCEEEEEEc-----------------cCCeEEEEECCCCcEEEEEeccccccccccccCCCce
Confidence              357899999    588 5888754                 35778899988776554322 10           123


Q ss_pred             ceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCC-EEEEEecCchhHHHHhhcchhHH
Q 017371          222 NGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIK  300 (372)
Q Consensus       222 ~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~r  300 (372)
                      .++..++++..++++....+.|+.++....+.-....+  ....+|.++.+|++|+ +|+++..                
T Consensus       301 a~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i--~~~~~~~d~~~~pdgr~~~va~~~----------------  362 (567)
T 1qks_A          301 AAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI--SAERFLHDGGLDGSHRYFITAANA----------------  362 (567)
T ss_dssp             EEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE--ECCSSEEEEEECTTSCEEEEEEGG----------------
T ss_pred             EEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeee--eccccccCceECCCCCEEEEEeCC----------------
Confidence            46778888888888888888999998764321111111  1233688999999997 5666655                


Q ss_pred             HHHHhcCccccccccCCCceEEEEECC-CCcEEEEEECCCCCeeccceeeE-EE--CCEEEEEe-CCCCeEEEEeCC
Q 017371          301 HVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGL-QV--DNHLYVIS-LTSNFIGKVQLS  372 (372)
Q Consensus       301 ~~~~~~p~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~-~~--~g~L~igs-~~~~~i~~~~~~  372 (372)
                                        .+.|..+|. +++++..+..- |..-.....+. .+  .+.+|+.+ ...+.|.+++.+
T Consensus       363 ------------------sn~V~ViD~~t~kl~~~i~vg-g~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~  420 (567)
T 1qks_A          363 ------------------RNKLVVIDTKEGKLVAIEDTG-GQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTD  420 (567)
T ss_dssp             ------------------GTEEEEEETTTTEEEEEEECS-SSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECC
T ss_pred             ------------------CCeEEEEECCCCcEEEEEecc-CcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCC
Confidence                              457788884 57777666430 22111111222 23  47899866 455899999764

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.18  E-value=1.3e-08  Score=93.31  Aligned_cols=216  Identities=17%  Similarity=0.070  Sum_probs=122.9

Q ss_pred             CCCccEEEcCCCc-EEEEe-cCCeEEEEe--CCceEEEEecCC-------CcccCeEEcCCCC-EEEEeCC---------
Q 017371           79 NHPEDASMDKNGV-IYTAT-RDGWIKRLQ--DGTWVNWKFIDS-------QTLVGLTSTKEGH-LIICDNA---------  137 (372)
Q Consensus        79 ~~p~~i~~d~~G~-l~v~~-~~g~i~~~~--~g~~~~~~~~~~-------~p~~gl~~d~dG~-l~v~~~~---------  137 (372)
                      ..|++++++++|. +|++. .++.|+.++  +++.........       .+. ++++++||+ ||++...         
T Consensus        43 ~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~-~~~~spdg~~l~~~~~~~~~~~~~~~  121 (349)
T 1jmx_B           43 FGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMY-SFAISPDGKEVYATVNPTQRLNDHYV  121 (349)
T ss_dssp             CSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSS-CEEECTTSSEEEEEEEEEEECSSCEE
T ss_pred             CCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccccccccccccc-ceEECCCCCEEEEEcccccccccccc
Confidence            3699999999985 78887 678999999  565443222222       267 999999996 6666532         


Q ss_pred             ---CcEEEEc-CCC-cEEEeeecCCcccccccceEEccCCcEEEEeCCC-CCCCccc--cccccccc-------------
Q 017371          138 ---NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSS-KYLPHEY--CLDILEGK-------------  196 (372)
Q Consensus       138 ---~gv~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~-~~~~~~~--~~~~~~~~-------------  196 (372)
                         ..+..++ .++ ...........  ..+..+++++||++|++.... .+.....  ...+....             
T Consensus       122 ~~~~~i~~~d~~~~~~~~~~~~~~~~--~~~~~~~~s~dg~l~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (349)
T 1jmx_B          122 VKPPRLEVFSTADGLEAKPVRTFPMP--RQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLY  199 (349)
T ss_dssp             ECCCEEEEEEGGGGGGBCCSEEEECC--SSCCCEEECTTSCEEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCC
T ss_pred             cCCCeEEEEECCCccccceeeeccCC--CcccceeECCCCcEEEccCcEEEEeCCCCceeccccccccCCccccCcccee
Confidence               4578888 554 21111111111  246788899999988753210 0000000  00000000             


Q ss_pred             -------------------------------CCCeEEEEeCCCCeEEEEe--CCccCcceEEEec-CCCEEEEEeCCCCe
Q 017371          197 -------------------------------PHGQLLKYDPSSNITTLVA--DGFYFANGVALSR-DEDYVVVCESWKFR  242 (372)
Q Consensus       197 -------------------------------~~g~v~~~d~~t~~~~~~~--~~~~~~~gi~~~~-dg~~l~v~~~~~~~  242 (372)
                                                     ....++.+|..+++++.+.  .....+.+++++| |++.+|++   .+.
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~---~~~  276 (349)
T 1jmx_B          200 FWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV---LNR  276 (349)
T ss_dssp             CCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE---ESE
T ss_pred             eecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE---cCe
Confidence                                           0001112333333332221  1112455778889 99999988   568


Q ss_pred             EEEEEccCCCCcceeeeccCCCCCCceeEEcCCC-CEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceE
Q 017371          243 CRKYWLKGERKGKLETFAENLPGAPDNINLAPDG-TFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAH  321 (372)
Q Consensus       243 i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G-~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~  321 (372)
                      |+.|++.+.+..  ..+.  ....|.+++++++| .||++ ..                                  .+.
T Consensus       277 v~~~d~~~~~~~--~~~~--~~~~~~~~~~s~dg~~l~~~-~~----------------------------------~~~  317 (349)
T 1jmx_B          277 LAKYDLKQRKLI--KAAN--LDHTYYCVAFDKKGDKLYLG-GT----------------------------------FND  317 (349)
T ss_dssp             EEEEETTTTEEE--EEEE--CSSCCCEEEECSSSSCEEEE-SB----------------------------------SSE
T ss_pred             EEEEECccCeEE--EEEc--CCCCccceEECCCCCEEEEe-cC----------------------------------CCe
Confidence            999998653211  1221  23357899999998 57774 33                                  357


Q ss_pred             EEEECC-CCcEEEEEECCC
Q 017371          322 LIHVAE-DGTIIRNLVDPT  339 (372)
Q Consensus       322 v~~~~~-~g~~~~~~~~~~  339 (372)
                      |..+|. +++.+..+..+.
T Consensus       318 v~v~d~~~~~~~~~~~~~~  336 (349)
T 1jmx_B          318 LAVFNPDTLEKVKNIKLPG  336 (349)
T ss_dssp             EEEEETTTTEEEEEEECSS
T ss_pred             EEEEeccccceeeeeecCC
Confidence            787885 477888877763

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.18  E-value=7.1e-09  Score=98.56  Aligned_cols=231  Identities=11%  Similarity=0.042  Sum_probs=131.1

Q ss_pred             cEEEEecC-----CeEEEEe--CCceEEEEecCCCcccCeEEcCCC-CEEEEeC----------CCcEEEEc-CCC--cE
Q 017371           91 VIYTATRD-----GWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEG-HLIICDN----------ANGLHKVS-EDG--VE  149 (372)
Q Consensus        91 ~l~v~~~~-----g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG-~l~v~~~----------~~gv~~~~-~~g--~~  149 (372)
                      .+|+++..     +.|..+|  ++++..-...+..|  ++++++|| .|||++.          ...|..+| .++  ..
T Consensus        86 ~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~  163 (426)
T 3c75_H           86 RVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIA  163 (426)
T ss_dssp             EEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEE
T ss_pred             EEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEE
Confidence            69999842     6899999  56655444455556  89999999 5999974          23488899 555  33


Q ss_pred             EEeeecCC-cc---cccccceEEccCC-cEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCC----ccC
Q 017371          150 NFLSYVNG-SK---LRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG----FYF  220 (372)
Q Consensus       150 ~l~~~~~~-~~---~~~~~~l~~d~dG-~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~----~~~  220 (372)
                      .+..  ++ .+   ...|.++++++|| ++|+++..                ..+.|..+|..++++......    ...
T Consensus       164 ~I~v--~g~~r~~~g~~P~~~~~spDGk~lyV~n~~----------------~~~~VsVID~~t~kvv~~I~v~g~~~~~  225 (426)
T 3c75_H          164 DIEL--PDAPRFLVGTYQWMNALTPDNKNLLFYQFS----------------PAPAVGVVDLEGKTFDRMLDVPDCYHIF  225 (426)
T ss_dssp             EEEE--TTCCCCCBSCCGGGSEECTTSSEEEEEECS----------------SSCEEEEEETTTTEEEEEEECCSEEEEE
T ss_pred             EEEC--CCccccccCCCcceEEEcCCCCEEEEEecC----------------CCCeEEEEECCCCeEEEEEEcCCceeec
Confidence            3321  21 11   2468899999999 69998642                133455555544443221110    001


Q ss_pred             c-----------------------------------------ceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeee
Q 017371          221 A-----------------------------------------NGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETF  259 (372)
Q Consensus       221 ~-----------------------------------------~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~  259 (372)
                      |                                         ..+.++++++.+|+... .++|+.++..+....-...+
T Consensus       226 p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~-~g~V~ViD~~~~~~~v~~~~  304 (426)
T 3c75_H          226 PASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTY-TGKIFQADLTAEGATFRAPI  304 (426)
T ss_dssp             EEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBT-TSEEEEEEECSSCEEECCCE
T ss_pred             cCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeC-CCcEEEEeccCCceEEeeee
Confidence            1                                         12334555555555543 34566666643321100011


Q ss_pred             c---cC--CCC-CCce---eEEcCCC-CEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEECC-C
Q 017371          260 A---EN--LPG-APDN---INLAPDG-TFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-D  328 (372)
Q Consensus       260 ~---~~--~~g-~p~~---i~~d~~G-~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~-~  328 (372)
                      .   ..  ..+ .|.+   ++++++| ++||+........    +                     ....+.|..+|. .
T Consensus       305 ~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gt----h---------------------k~~s~~VsVID~~T  359 (426)
T 3c75_H          305 EALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWK----H---------------------KAASRFVVVLNAET  359 (426)
T ss_dssp             ESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTC----T---------------------TSCEEEEEEEETTT
T ss_pred             eeccccccccccccCCceeeEEcCCCCEEEEEeccccccc----c---------------------cCCCCEEEEEECCC
Confidence            0   00  000 1333   7888886 6888875310000    0                     001357888985 5


Q ss_pred             CcEEEEEECCCCCeeccceeeEEE--CC-EEEEEeCCCCeEEEEeCC
Q 017371          329 GTIIRNLVDPTGQLMSFVTSGLQV--DN-HLYVISLTSNFIGKVQLS  372 (372)
Q Consensus       329 g~~~~~~~~~~g~~~~~~t~~~~~--~g-~L~igs~~~~~i~~~~~~  372 (372)
                      ++++..+....     .+.++.+.  +. +||+.+..++.|.++|+.
T Consensus       360 ~kvv~~I~vg~-----~P~gia~spDg~~~lyv~n~~s~~VsVID~~  401 (426)
T 3c75_H          360 GERINKIELGH-----EIDSINVSQDAEPLLYALSAGTQTLHIYDAA  401 (426)
T ss_dssp             CCEEEEEEEEE-----EECEEEECCSSSCEEEEEETTTTEEEEEETT
T ss_pred             CeEEEEEECCC-----CcCeEEEccCCCEEEEEEcCCCCeEEEEECC
Confidence            78888876532     24555554  45 788888889999999863

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.17  E-value=6.1e-09  Score=98.99  Aligned_cols=222  Identities=14%  Similarity=0.110  Sum_probs=133.3

Q ss_pred             ceEecCCCCCCCccEEEcCCC-cEEEEec----------CCeEEEEe--CCceE-EEEec-------CCCcccCeEEcCC
Q 017371           70 FIKVGEGSVNHPEDASMDKNG-VIYTATR----------DGWIKRLQ--DGTWV-NWKFI-------DSQTLVGLTSTKE  128 (372)
Q Consensus        70 ~~~~~~g~~~~p~~i~~d~~G-~l~v~~~----------~g~i~~~~--~g~~~-~~~~~-------~~~p~~gl~~d~d  128 (372)
                      +..+..|.  .| ++++++|| .||+++.          ++.|..+|  ++++. .+...       +..|. ++++++|
T Consensus       112 v~~I~vG~--~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~-~~~~spD  187 (426)
T 3c75_H          112 LGMTDGGF--LP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQW-MNALTPD  187 (426)
T ss_dssp             EEEEEECS--SC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGG-GSEECTT
T ss_pred             EEEEECCC--CC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcc-eEEEcCC
Confidence            44455563  68 99999988 6999973          56799999  55543 33322       35789 9999999


Q ss_pred             C-CEEEEeCC--CcEEEEc-CCC--cEEEeeecCCcccccccc----eEEccCCcEEEEeCCC-C--------CCCccc-
Q 017371          129 G-HLIICDNA--NGLHKVS-EDG--VENFLSYVNGSKLRFAND----VVEASDGSLYFTVSSS-K--------YLPHEY-  188 (372)
Q Consensus       129 G-~l~v~~~~--~gv~~~~-~~g--~~~l~~~~~~~~~~~~~~----l~~d~dG~i~vtd~~~-~--------~~~~~~-  188 (372)
                      | .|||++..  ..|..+| .++  +..+..  ++.....+.+    +++.+||++.+.+... +        +..... 
T Consensus       188 Gk~lyV~n~~~~~~VsVID~~t~kvv~~I~v--~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p  265 (426)
T 3c75_H          188 NKNLLFYQFSPAPAVGVVDLEGKTFDRMLDV--PDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDEL  265 (426)
T ss_dssp             SSEEEEEECSSSCEEEEEETTTTEEEEEEEC--CSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSC
T ss_pred             CCEEEEEecCCCCeEEEEECCCCeEEEEEEc--CCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCc
Confidence            9 58998743  4699999 565  333321  1111112222    6677788655444321 1        111000 


Q ss_pred             -c---------cccccccCCCeEEEEeCCCCeEEEEeC-------C---ccCcce---EEEecCCCEEEEEeCC------
Q 017371          189 -C---------LDILEGKPHGQLLKYDPSSNITTLVAD-------G---FYFANG---VALSRDEDYVVVCESW------  239 (372)
Q Consensus       189 -~---------~~~~~~~~~g~v~~~d~~t~~~~~~~~-------~---~~~~~g---i~~~~dg~~l~v~~~~------  239 (372)
                       .         ..+......+.|+.+|..+++.+.+..       .   ...|.|   +++++|++++|+++..      
T Consensus       266 ~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gth  345 (426)
T 3c75_H          266 LINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKH  345 (426)
T ss_dssp             BCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCT
T ss_pred             eeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccc
Confidence             0         000111124567888876554433211       0   012444   8999999999998742      


Q ss_pred             ---CCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCC-EEEEEe-cCchhHHHHhhcchhHHHHHHhcCccccccc
Q 017371          240 ---KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAII-KLDARRMKILNSSKLIKHVLAAYPKLFSQFI  314 (372)
Q Consensus       240 ---~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwva~~-~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~  314 (372)
                         .+.|..+|....+...  .+.  .++.|.++++++||+ +|+... .                              
T Consensus       346 k~~s~~VsVID~~T~kvv~--~I~--vg~~P~gia~spDg~~~lyv~n~~------------------------------  391 (426)
T 3c75_H          346 KAASRFVVVLNAETGERIN--KIE--LGHEIDSINVSQDAEPLLYALSAG------------------------------  391 (426)
T ss_dssp             TSCEEEEEEEETTTCCEEE--EEE--EEEEECEEEECCSSSCEEEEEETT------------------------------
T ss_pred             cCCCCEEEEEECCCCeEEE--EEE--CCCCcCeEEEccCCCEEEEEEcCC------------------------------
Confidence               3479999986543221  221  223599999999998 555444 4                              


Q ss_pred             cCCCceEEEEECC-CCcEEEEE
Q 017371          315 TLGGGAHLIHVAE-DGTIIRNL  335 (372)
Q Consensus       315 ~~~~~~~v~~~~~-~g~~~~~~  335 (372)
                          .+.|..+|. +++++..+
T Consensus       392 ----s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          392 ----TQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             ----TTEEEEEETTTCCEEEEE
T ss_pred             ----CCeEEEEECCCCCEEEEe
Confidence                468899994 58888776

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.17  E-value=3.7e-09  Score=93.06  Aligned_cols=188  Identities=14%  Similarity=0.102  Sum_probs=126.6

Q ss_pred             CeEEcCCCCEEEEeCCC-cEEEEc-CCC--cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccC
Q 017371          122 GLTSTKEGHLIICDNAN-GLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKP  197 (372)
Q Consensus       122 gl~~d~dG~l~v~~~~~-gv~~~~-~~g--~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~  197 (372)
                      ||.++ ++.||++.... .|.++| ++|  ...+   .+..  .+..+++++ .++||+.+.                 .
T Consensus        59 GL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~---l~~~--~FgeGit~~-g~~Ly~ltw-----------------~  114 (268)
T 3nok_A           59 GLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME---RLGN--IFAEGLASD-GERLYQLTW-----------------T  114 (268)
T ss_dssp             EEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE---ECTT--CCEEEEEEC-SSCEEEEES-----------------S
T ss_pred             eEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE---CCCC--cceeEEEEe-CCEEEEEEc-----------------c
Confidence            88887 58999998764 377788 677  4433   2221  244567775 459999864                 4


Q ss_pred             CCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccC--CCCCCceeEEcCC
Q 017371          198 HGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAEN--LPGAPDNINLAPD  275 (372)
Q Consensus       198 ~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~--~~g~p~~i~~d~~  275 (372)
                      .+.++.||+++.+...-...  .+.|..+++|++.||+++ +.++|+.++..+.+....-.....  .-.+++.+... +
T Consensus       115 ~~~v~V~D~~Tl~~~~ti~~--~~eGwGLt~Dg~~L~vSd-Gs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-d  190 (268)
T 3nok_A          115 EGLLFTWSGMPPQRERTTRY--SGEGWGLCYWNGKLVRSD-GGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-N  190 (268)
T ss_dssp             SCEEEEEETTTTEEEEEEEC--SSCCCCEEEETTEEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-T
T ss_pred             CCEEEEEECCcCcEEEEEeC--CCceeEEecCCCEEEEEC-CCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-C
Confidence            67899999988776544332  245566667889999998 588999999876432221111111  11134556655 8


Q ss_pred             CCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEECC-CCcEEEEEECCC---------CCeecc
Q 017371          276 GTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPT---------GQLMSF  345 (372)
Q Consensus       276 G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~---------g~~~~~  345 (372)
                      |.+|+..+.                                  ...|.++|+ +|+++..+....         ....+.
T Consensus       191 G~lyanvw~----------------------------------s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~v  236 (268)
T 3nok_A          191 GVIYANIWH----------------------------------SSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAV  236 (268)
T ss_dssp             TEEEEEETT----------------------------------CSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCC
T ss_pred             CEEEEEECC----------------------------------CCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCc
Confidence            899998876                                  468999997 589988876421         011234


Q ss_pred             ceeeEEE--CCEEEEEeCCCCeEEEEeC
Q 017371          346 VTSGLQV--DNHLYVISLTSNFIGKVQL  371 (372)
Q Consensus       346 ~t~~~~~--~g~L~igs~~~~~i~~~~~  371 (372)
                      ..+++.+  .++||+....=+.+-.++|
T Consensus       237 lNGIA~dp~~~rlfVTGK~Wp~~~ev~~  264 (268)
T 3nok_A          237 LNGIAVEPGSGRIFMTGKLWPRLFEVRL  264 (268)
T ss_dssp             EEEEEECTTTCCEEEEETTCSEEEEEEE
T ss_pred             eEEEEEcCCCCEEEEeCCCCCceEEEEE
Confidence            5677776  4899999998888888775

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.15  E-value=1.4e-08  Score=92.94  Aligned_cols=158  Identities=10%  Similarity=0.004  Sum_probs=95.8

Q ss_pred             cEEEcCCCcEEEEe-cCCeEEEEe--CCceEEEEecCC--CcccCeEEcCCCC-EEEEeCC-CcEEEEc-CCC-cE-EEe
Q 017371           83 DASMDKNGVIYTAT-RDGWIKRLQ--DGTWVNWKFIDS--QTLVGLTSTKEGH-LIICDNA-NGLHKVS-EDG-VE-NFL  152 (372)
Q Consensus        83 ~i~~d~~G~l~v~~-~~g~i~~~~--~g~~~~~~~~~~--~p~~gl~~d~dG~-l~v~~~~-~gv~~~~-~~g-~~-~l~  152 (372)
                      ++++.+++.+|++. .++.|+.+|  +++.........  .+. +++++++|+ +|++... ..|..++ .++ .. .+.
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~-~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~   82 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPG-TAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN   82 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSC-EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCc-eeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence            44566788888876 789999999  565543333333  578 999999996 7888654 4588888 556 32 222


Q ss_pred             eec-CCcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEE---EEeCCccCcceEEEe
Q 017371          153 SYV-NGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT---LVADGFYFANGVALS  227 (372)
Q Consensus       153 ~~~-~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~---~~~~~~~~~~gi~~~  227 (372)
                      ... ++.....+.++++++||+ +|++..........      .....+.|+.+|.++++..   ........+.+++++
T Consensus        83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~------~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s  156 (349)
T 1jmx_B           83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDH------YVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAA  156 (349)
T ss_dssp             SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSC------EEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEEC
T ss_pred             cccccccccccccceEECCCCCEEEEEcccccccccc------cccCCCeEEEEECCCccccceeeeccCCCcccceeEC
Confidence            110 111124578999999995 66654210000000      0012468999998764321   112222346788899


Q ss_pred             cCCCEEEEEeCCCCeEEEEEccCC
Q 017371          228 RDEDYVVVCESWKFRCRKYWLKGE  251 (372)
Q Consensus       228 ~dg~~l~v~~~~~~~i~~~~~~g~  251 (372)
                      +||+ +|++.   ..|+.+++.+.
T Consensus       157 ~dg~-l~~~~---~~i~~~d~~~~  176 (349)
T 1jmx_B          157 DDGS-LYVAG---PDIYKMDVKTG  176 (349)
T ss_dssp             TTSC-EEEES---SSEEEECTTTC
T ss_pred             CCCc-EEEcc---CcEEEEeCCCC
Confidence            9999 88853   23888887643

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=99.13  E-value=2.1e-08  Score=88.53  Aligned_cols=195  Identities=11%  Similarity=0.101  Sum_probs=128.7

Q ss_pred             CCcccCeEEcCC-CCEEEE-eCCCcEEEEcCCC--cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCccccccc
Q 017371          117 SQTLVGLTSTKE-GHLIIC-DNANGLHKVSEDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDI  192 (372)
Q Consensus       117 ~~p~~gl~~d~d-G~l~v~-~~~~gv~~~~~~g--~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~  192 (372)
                      +.+- ||+++++ ++||++ +....|++++.+|  .+.+..  .+  ..-+.+|+++.+|.+|+++.             
T Consensus        27 ~~lS-Gla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~l--~g--~~D~EGIa~~~~g~~~vs~E-------------   88 (255)
T 3qqz_A           27 NNIS-SLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPL--DF--VKDLETIEYIGDNQFVISDE-------------   88 (255)
T ss_dssp             SCEE-EEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEEC--SS--CSSEEEEEECSTTEEEEEET-------------
T ss_pred             cCcc-eeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEec--CC--CCChHHeEEeCCCEEEEEEC-------------
Confidence            3455 9999986 469975 5445699999557  343321  22  24577999999999999864             


Q ss_pred             ccccCCCeEEEEeCCC-CeEE---EEeCCc-cCc-----ceEEEecCCCEEEEEeCCCC-eEEEEEccCCCC-cceeee-
Q 017371          193 LEGKPHGQLLKYDPSS-NITT---LVADGF-YFA-----NGVALSRDEDYVVVCESWKF-RCRKYWLKGERK-GKLETF-  259 (372)
Q Consensus       193 ~~~~~~g~v~~~d~~t-~~~~---~~~~~~-~~~-----~gi~~~~dg~~l~v~~~~~~-~i~~~~~~g~~~-~~~~~~-  259 (372)
                          ..++++.++... ++..   .....+ ..+     .|++++++++.||++.-... +|+.++  |-.. ...... 
T Consensus        89 ----~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~--g~~~~~~l~i~~  162 (255)
T 3qqz_A           89 ----RDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN--GLLSSNELHISK  162 (255)
T ss_dssp             ----TTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEE--STTCSSCCEEEE
T ss_pred             ----CCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEc--ccccCCceeeec
Confidence                346777765332 2211   111111 123     59999999988999775544 777776  2110 111111 


Q ss_pred             ----ccC-CCCCCceeEEcCC-CCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEECCCCcEEE
Q 017371          260 ----AEN-LPGAPDNINLAPD-GTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIR  333 (372)
Q Consensus       260 ----~~~-~~g~p~~i~~d~~-G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~g~~~~  333 (372)
                          ... .-.-+.++++|+. |++||-...                                  ...++++|.+|+++.
T Consensus       163 ~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~----------------------------------s~~L~~~d~~g~~~~  208 (255)
T 3qqz_A          163 DKALQRQFTLDDVSGAEFNQQKNTLLVLSHE----------------------------------SRALQEVTLVGEVIG  208 (255)
T ss_dssp             CHHHHHTCCSSCCCEEEEETTTTEEEEEETT----------------------------------TTEEEEECTTCCEEE
T ss_pred             chhhccccccCCceeEEEcCCCCeEEEEECC----------------------------------CCeEEEEcCCCCEEE
Confidence                001 1123789999975 578888776                                  468999999999998


Q ss_pred             EEECCCCC-----eeccceeeEEE-CCEEEEEeCCCCeEEEEe
Q 017371          334 NLVDPTGQ-----LMSFVTSGLQV-DNHLYVISLTSNFIGKVQ  370 (372)
Q Consensus       334 ~~~~~~g~-----~~~~~t~~~~~-~g~L~igs~~~~~i~~~~  370 (372)
                      .+....|.     .+..+.+++.+ +|+|||.+ ..|.+.+++
T Consensus       209 ~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvs-E~n~~y~f~  250 (255)
T 3qqz_A          209 EMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVS-EPNRFYRFT  250 (255)
T ss_dssp             EEECSTTGGGCSSCCCSEEEEEECTTCCEEEEE-TTTEEEEEE
T ss_pred             EEEcCCccCCcccccCCCCeeEECCCCCEEEEc-CCceEEEEE
Confidence            88777552     35678899998 59999997 447888875

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.12  E-value=6.6e-08  Score=90.42  Aligned_cols=237  Identities=15%  Similarity=0.125  Sum_probs=133.9

Q ss_pred             ceEecCCCCCCCccEEEcCCC-cEEEEec----------CCeEEEEe--CCce-EEEEec-------CCCcccCeEEcCC
Q 017371           70 FIKVGEGSVNHPEDASMDKNG-VIYTATR----------DGWIKRLQ--DGTW-VNWKFI-------DSQTLVGLTSTKE  128 (372)
Q Consensus        70 ~~~~~~g~~~~p~~i~~d~~G-~l~v~~~----------~g~i~~~~--~g~~-~~~~~~-------~~~p~~gl~~d~d  128 (372)
                      +..+..|.  .|+ ++++++| .+|+++.          ++.|..||  ++++ ..+..+       +..|. ++++++|
T Consensus        72 ~~~I~vG~--~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~-~~a~spD  147 (386)
T 3sjl_D           72 IGMIDGGF--LPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPW-MTSLTPD  147 (386)
T ss_dssp             EEEEEECS--SCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGG-GEEECTT
T ss_pred             EEEEECCC--CCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCc-eEEEcCC
Confidence            34455563  686 9999998 6999872          46689999  5553 334322       23789 9999999


Q ss_pred             CC-EEEEeC--CCcEEEEc-CCC--cEEEeeecCCcccccccc----eEEccCCcEEEEeCCCCCCCcccccccccccCC
Q 017371          129 GH-LIICDN--ANGLHKVS-EDG--VENFLSYVNGSKLRFAND----VVEASDGSLYFTVSSSKYLPHEYCLDILEGKPH  198 (372)
Q Consensus       129 G~-l~v~~~--~~gv~~~~-~~g--~~~l~~~~~~~~~~~~~~----l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~  198 (372)
                      |+ |||++.  ...|..+| .++  +..+.  .++....+|.+    ++..+||+                         
T Consensus       148 Gk~lyVan~~~~~~VsVID~~t~~vv~tI~--v~g~~~~~P~g~~~~~~~~~DG~-------------------------  200 (386)
T 3sjl_D          148 GKTLLFYQFSPAPAVGVVDLEGKAFKRMLD--VPDCYHIFPTAPDTFFMHCRDGS-------------------------  200 (386)
T ss_dssp             SSEEEEEECSSSCEEEEEETTTTEEEEEEE--CCSEEEEEEEETTEEEEEETTSC-------------------------
T ss_pred             CCEEEEEEcCCCCeEEEEECCCCcEEEEEE--CCCcceeecCCCceeEEECCCCC-------------------------
Confidence            95 899975  35688999 666  33332  12211112222    23444554                         


Q ss_pred             CeEEEEeCCC-CeEEEEeCC------ccCcceEEEe-cCCCEEEEEeCCCCeEEEEEccCCCCcce---eeecc--C---
Q 017371          199 GQLLKYDPSS-NITTLVADG------FYFANGVALS-RDEDYVVVCESWKFRCRKYWLKGERKGKL---ETFAE--N---  262 (372)
Q Consensus       199 g~v~~~d~~t-~~~~~~~~~------~~~~~gi~~~-~dg~~l~v~~~~~~~i~~~~~~g~~~~~~---~~~~~--~---  262 (372)
                        +..++.++ +++......      ....+..+++ +||+.+|++.  +.+|+.++..+....-.   ..+..  .   
T Consensus       201 --~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~--~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g  276 (386)
T 3sjl_D          201 --LAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTY--TGKIHQIDLSSGDAKFLPAVEALTEAERADG  276 (386)
T ss_dssp             --EEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBT--TSEEEEEECTTSSCEECCCEESSCHHHHHTT
T ss_pred             --EEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeC--CCEEEEEECCCCcceeecceecccccccccc
Confidence              44444332 222111111      1111223554 6786566555  45799999876532211   11111  0   


Q ss_pred             -CCCCCceeEEcCCC-CEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEECC-CCcEEEEEECCC
Q 017371          263 -LPGAPDNINLAPDG-TFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPT  339 (372)
Q Consensus       263 -~~g~p~~i~~d~~G-~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~  339 (372)
                       .++....+++++++ ++||+......    .-                     -..+.+.|..+|. .++++..+....
T Consensus       277 ~~p~g~q~~a~~~~~~~lyV~~~~~~~----~~---------------------hk~~~~~V~viD~~t~kv~~~i~vg~  331 (386)
T 3sjl_D          277 WRPGGWQQVAYHRALDRIYLLVDQRDE----WR---------------------HKTASRFVVVLDAKTGERLAKFEMGH  331 (386)
T ss_dssp             EEECSSSCEEEETTTTEEEEEEEECCT----TC---------------------TTSCEEEEEEEETTTCCEEEEEEEEE
T ss_pred             ccCCCcceeeECCCCCeEEEEeccccc----cc---------------------cCCCCCEEEEEECCCCeEEEEEECCC
Confidence             11222347888776 79998753100    00                     0112467999995 588888876532


Q ss_pred             CCeeccceeeEEE-CC--EEEEEeCCCCeEEEEeC
Q 017371          340 GQLMSFVTSGLQV-DN--HLYVISLTSNFIGKVQL  371 (372)
Q Consensus       340 g~~~~~~t~~~~~-~g--~L~igs~~~~~i~~~~~  371 (372)
                           .+.++... ++  +||+++..++.|.++|.
T Consensus       332 -----~~~~lavs~D~~~~ly~tn~~~~~VsViD~  361 (386)
T 3sjl_D          332 -----EIDSINVSQDEKPLLYALSTGDKTLYIHDA  361 (386)
T ss_dssp             -----EECEEEECSSSSCEEEEEETTTTEEEEEET
T ss_pred             -----CcceEEECCCCCeEEEEEcCCCCeEEEEEC
Confidence                 24455553 43  68888888999999985

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=99.12  E-value=2.3e-08  Score=92.99  Aligned_cols=228  Identities=11%  Similarity=0.020  Sum_probs=149.2

Q ss_pred             CCccEEEc-CCCcEEEEec---CC---eEEEEe-C---C------ce-EEEEe--cC---CCcccCeEEcCCCCEEEEeC
Q 017371           80 HPEDASMD-KNGVIYTATR---DG---WIKRLQ-D---G------TW-VNWKF--ID---SQTLVGLTSTKEGHLIICDN  136 (372)
Q Consensus        80 ~p~~i~~d-~~G~l~v~~~---~g---~i~~~~-~---g------~~-~~~~~--~~---~~p~~gl~~d~dG~l~v~~~  136 (372)
                      -|.++++| .+|++|++-.   .|   .+..++ +   +      .. +-+..  .+   -.+. ++.+|+.|+|||.|.
T Consensus        27 ~P~gv~vd~~~gRiFvt~PR~~~gvp~TL~~v~~~~~~~~~~~~p~ll~PYP~w~~~~~lvsV~-~v~iD~~~rLWVLDt  105 (381)
T 3q6k_A           27 ISTAFAYDAEGEKLFLAVPRKLPRVPYTLAEVDTKNSLGVKGKHSPLLNKFSGHKTGKELTSIY-QPVIDDCRRLWVVDI  105 (381)
T ss_dssp             CCCEEEEETTTTEEEEECCTTSTTCSCSEEEEEHHHHTTCTTCSSCCBEECTTCSSSCSSSCEE-EEEECTTCEEEEEEC
T ss_pred             ceeeeeeecCCCcEEEEeCCCCCCCCcEEEEEeCCCCcccccCCcccccCCCCCccccceEEee-EEEEcCCCcEEEEeC
Confidence            47889995 8899999872   22   345555 1   1      23 33321  11   1346 889999999999997


Q ss_pred             CC----------------cEEEEc-C-C--C-cEEEeee-cCCcccccccceEEc-c-------CCcEEEEeCCCCCCCc
Q 017371          137 AN----------------GLHKVS-E-D--G-VENFLSY-VNGSKLRFANDVVEA-S-------DGSLYFTVSSSKYLPH  186 (372)
Q Consensus       137 ~~----------------gv~~~~-~-~--g-~~~l~~~-~~~~~~~~~~~l~~d-~-------dG~i~vtd~~~~~~~~  186 (372)
                      +.                .|+.+| . +  . ++.+.-. ....+..+.++|++| .       ++.+|++|+.      
T Consensus       106 G~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~------  179 (381)
T 3q6k_A          106 GSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFL------  179 (381)
T ss_dssp             SSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETT------
T ss_pred             CCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCC------
Confidence            61                277788 4 4  3 3332211 111223578899999 2       5689999973      


Q ss_pred             ccccccccccCCCeEEEEeCCCCeEEEEeCCc-------------------cCcceEEEecC----CCEEEEEeCCCCeE
Q 017371          187 EYCLDILEGKPHGQLLKYDPSSNITTLVADGF-------------------YFANGVALSRD----EDYVVVCESWKFRC  243 (372)
Q Consensus       187 ~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~-------------------~~~~gi~~~~d----g~~l~v~~~~~~~i  243 (372)
                                 .++|+.||..+++...+....                   ....|++++|+    ++.||+.-..+.++
T Consensus       180 -----------~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~l  248 (381)
T 3q6k_A          180 -----------RGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKV  248 (381)
T ss_dssp             -----------TTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEE
T ss_pred             -----------CCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcE
Confidence                       457888887777655554211                   13468999998    89999999988899


Q ss_pred             EEEEc---cCCCC-cceeeeccCCCCCCc--eeEEc-CCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccC
Q 017371          244 RKYWL---KGERK-GKLETFAENLPGAPD--NINLA-PDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITL  316 (372)
Q Consensus       244 ~~~~~---~g~~~-~~~~~~~~~~~g~p~--~i~~d-~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~  316 (372)
                      +++..   ..+.. ...+.+.+..+ ..+  ++++| ++|+||++...                                
T Consensus       249 y~V~T~~L~~~~~~~~v~~~G~kg~-~s~~~~~~~D~~~G~ly~~~~~--------------------------------  295 (381)
T 3q6k_A          249 YSVNTKELKQKGGKLNPELLGNRGK-YNDAIALAYDPKTKVIFFAEAN--------------------------------  295 (381)
T ss_dssp             EEEEHHHHSSTTCCCCCEEEEECCT-TCCEEEEEECTTTCEEEEEESS--------------------------------
T ss_pred             EEEEHHHhhCcchhhceEEeeecCC-CCCcceEEEeCCCCeEEEEecc--------------------------------
Confidence            99973   22222 22333332211 134  46776 89999999987                                


Q ss_pred             CCceEEEEECCCC-c-----EEEEEECCCCCeeccceeeEEE-CCEEEEEeCCC
Q 017371          317 GGGAHLIHVAEDG-T-----IIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTS  363 (372)
Q Consensus       317 ~~~~~v~~~~~~g-~-----~~~~~~~~~g~~~~~~t~~~~~-~g~L~igs~~~  363 (372)
                        ...|.+.++++ .     .....+++  . +.+++.+..+ +|+||+.+.+-
T Consensus       296 --~~aI~~w~~~~~~~~~~n~~~l~~d~--~-l~~pd~~~i~~~g~Lwv~sn~l  344 (381)
T 3q6k_A          296 --TKQVSCWNTQKMPLRMKNTDVVYTSS--R-FVFGTDISVDSKGGLWFMSNGF  344 (381)
T ss_dssp             --SSEEEEEETTSCSBCGGGEEEEEECT--T-CCSEEEEEECTTSCEEEEECSC
T ss_pred             --CCeEEEEeCCCCccccCceEEEEECC--C-ccccCeEEECCCCeEEEEECcc
Confidence              57899999887 2     24445665  2 6789999986 69999998654

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=99.12  E-value=1.4e-09  Score=104.66  Aligned_cols=171  Identities=9%  Similarity=0.034  Sum_probs=108.1

Q ss_pred             ceEEEEecCCCcccCeEEcCCCCEEEEeCCC-cEEEEc-CCC-cEEEeeecCC----cccccccceEEcc----CCcEEE
Q 017371          108 TWVNWKFIDSQTLVGLTSTKEGHLIICDNAN-GLHKVS-EDG-VENFLSYVNG----SKLRFANDVVEAS----DGSLYF  176 (372)
Q Consensus       108 ~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~-gv~~~~-~~g-~~~l~~~~~~----~~~~~~~~l~~d~----dG~i~v  176 (372)
                      +++.+......|. +|+++++|+|||++... .|++++ .+| .+.+......    .....+.+|++++    +|.||+
T Consensus        18 ~~~~~a~~l~~P~-~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv   96 (454)
T 1cru_A           18 DKKVILSNLNKPH-ALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYI   96 (454)
T ss_dssp             CEEEEECCCSSEE-EEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEE
T ss_pred             EEEEEECCCCCce-EEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEE
Confidence            3455555667899 99999999999998765 499998 457 5544321111    1124566999998    789999


Q ss_pred             EeCCCCCCCcccccccccccCCCeEEEEeCCC--C---eEEEEeC-----CccCcceEEEecCCCEEEEEeCC-------
Q 017371          177 TVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS--N---ITTLVAD-----GFYFANGVALSRDEDYVVVCESW-------  239 (372)
Q Consensus       177 td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t--~---~~~~~~~-----~~~~~~gi~~~~dg~~l~v~~~~-------  239 (372)
                      +++...-....     .......+|+|++.+.  +   ..+++.+     ..+.+++++|++||+ ||++...       
T Consensus        97 ~~s~~~~~~~~-----~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~-Lyv~~Gd~~~~~~~  170 (454)
T 1cru_A           97 SGTFKNPKSTD-----KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQK-IYYTIGDQGRNQLA  170 (454)
T ss_dssp             EEEEECTTC-------CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSC-EEEEECCTTTTSGG
T ss_pred             EEeccccCCCc-----cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCe-EEEEECCCCCCCcc
Confidence            86420000000     0000135788886532  1   2233332     345678999999997 9998431       


Q ss_pred             -------------------------CCeEEEEEccCCCC-c-------ceeeeccCCCCCCceeEEcCCCCEEEEEecCc
Q 017371          240 -------------------------KFRCRKYWLKGERK-G-------KLETFAENLPGAPDNINLAPDGTFWIAIIKLD  286 (372)
Q Consensus       240 -------------------------~~~i~~~~~~g~~~-~-------~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~  286 (372)
                                               ..+|+|++.+|.-. .       ..+++...+ ..|.++++|++|+||+++...+
T Consensus       171 ~~~~~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~-RNp~gla~dp~G~L~~~d~g~~  249 (454)
T 1cru_A          171 YLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGH-RNPQGLAFTPNGKLLQSEQGPN  249 (454)
T ss_dssp             GTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCC-SEEEEEEECTTSCEEEEEECSS
T ss_pred             ccccccccccccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECC-CCcceEEECCCCCEEEEecCCC
Confidence                                     35799999887410 0       234454322 3488999999999999997643

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=99.12  E-value=3e-09  Score=96.63  Aligned_cols=159  Identities=14%  Similarity=0.131  Sum_probs=106.3

Q ss_pred             ccccceEEcc-CCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEE-eCCc-------cCcceEEE---ec
Q 017371          161 RFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-ADGF-------YFANGVAL---SR  228 (372)
Q Consensus       161 ~~~~~l~~d~-dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~-~~~~-------~~~~gi~~---~~  228 (372)
                      .+|.++++|+ +|++|+++.                 ..++|+++|++++..+.+ ..++       ..+.|+.+   ++
T Consensus        13 ~yPE~~~wd~~~g~~~vs~l-----------------~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~   75 (334)
T 2p9w_A           13 LTPEDTIYDRTRQVFYQSNL-----------------YKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN   75 (334)
T ss_dssp             CCCSCEEEETTTTEEEEEET-----------------TTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS
T ss_pred             cCCcCccCcCCCCEEEEEec-----------------cCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC
Confidence            5888999976 789999976                 468999999986654444 2222       24679999   78


Q ss_pred             CCCEEEE-EeC------------CCCeEEEEEccCCCCcceeeecc------C-------CCCCCceeEEcCCCCEEEEE
Q 017371          229 DEDYVVV-CES------------WKFRCRKYWLKGERKGKLETFAE------N-------LPGAPDNINLAPDGTFWIAI  282 (372)
Q Consensus       229 dg~~l~v-~~~------------~~~~i~~~~~~g~~~~~~~~~~~------~-------~~g~p~~i~~d~~G~lwva~  282 (372)
                      +++ ||+ ++.            +...|.+|++++...++.....+      .       ..+.++++++|++||+||+.
T Consensus        76 ~gr-L~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~  154 (334)
T 2p9w_A           76 SKR-LFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAF  154 (334)
T ss_dssp             CCE-EEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEE
T ss_pred             CCc-EEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeC
Confidence            854 776 442            35789999998211111111111      1       22347899999999999987


Q ss_pred             ecCchhHHHHhhcchhHHHHHHhcCccccccccCCCc-eEEEEECCCCcEEEEEEC--CCCCeeccceeeEEE-CC-EEE
Q 017371          283 IKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGG-AHLIHVAEDGTIIRNLVD--PTGQLMSFVTSGLQV-DN-HLY  357 (372)
Q Consensus       283 ~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~-~~v~~~~~~g~~~~~~~~--~~g~~~~~~t~~~~~-~g-~L~  357 (372)
                      ..                                  . +.|++++++|+.+..+..  +........++++.. +| .|+
T Consensus       155 s~----------------------------------~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Li  200 (334)
T 2p9w_A          155 AL----------------------------------GMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLI  200 (334)
T ss_dssp             EE----------------------------------SSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEE
T ss_pred             CC----------------------------------CCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEE
Confidence            76                                  3 689999999985554432  222223346777877 55 455


Q ss_pred             EEeCCCCeEEEEeCC
Q 017371          358 VISLTSNFIGKVQLS  372 (372)
Q Consensus       358 igs~~~~~i~~~~~~  372 (372)
                      +... ...|.++++.
T Consensus       201 v~~~-~g~L~~fD~~  214 (334)
T 2p9w_A          201 AFGG-PRALTAFDVS  214 (334)
T ss_dssp             EESS-SSSEEEEECS
T ss_pred             EEcC-CCeEEEEcCC
Confidence            5555 8999998863

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.11  E-value=1.2e-08  Score=92.80  Aligned_cols=148  Identities=12%  Similarity=0.014  Sum_probs=97.1

Q ss_pred             EEEEecCCeEEEEe--CCceEEEEecCC---CcccCeEEcCCCC-EEEEeCC-CcEEEEc-CCC--cEEEeeecCCcccc
Q 017371           92 IYTATRDGWIKRLQ--DGTWVNWKFIDS---QTLVGLTSTKEGH-LIICDNA-NGLHKVS-EDG--VENFLSYVNGSKLR  161 (372)
Q Consensus        92 l~v~~~~g~i~~~~--~g~~~~~~~~~~---~p~~gl~~d~dG~-l~v~~~~-~gv~~~~-~~g--~~~l~~~~~~~~~~  161 (372)
                      ++++..++.|..+|  +++.........   .|. +++++++|+ +|++... ..|..++ .++  ...+.....+....
T Consensus         4 ~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~   82 (337)
T 1pby_B            4 ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPM-VPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVK   82 (337)
T ss_dssp             EEEEETTTEEEEEETTTTEEEEEEECTTCTTCCC-CEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEE
T ss_pred             EEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCcc-ceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccc
Confidence            44555788999999  555544333334   588 999999994 7888755 4588888 566  33332221111122


Q ss_pred             cccceEEccCC-cEEEEeCCCCCCCccccccccccc--CCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeC
Q 017371          162 FANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGK--PHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES  238 (372)
Q Consensus       162 ~~~~l~~d~dG-~i~vtd~~~~~~~~~~~~~~~~~~--~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~  238 (372)
                      .+.+++++++| .+|+++......        ....  ..+.|+.+|.++++..........+.+++++||++++|++  
T Consensus        83 ~~~~~~~s~dg~~l~~~~~~~~~~--------~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--  152 (337)
T 1pby_B           83 SLFGAALSPDGKTLAIYESPVRLE--------LTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--  152 (337)
T ss_dssp             CTTCEEECTTSSEEEEEEEEEEEC--------SSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--
T ss_pred             cccceEECCCCCEEEEEecccccc--------cccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--
Confidence            57789999999 677764210000        0000  2478999999888766555445568899999999999998  


Q ss_pred             CCCeEEEEEccCC
Q 017371          239 WKFRCRKYWLKGE  251 (372)
Q Consensus       239 ~~~~i~~~~~~g~  251 (372)
                       ++.|+.+++.+.
T Consensus       153 -~~~i~~~d~~~~  164 (337)
T 1pby_B          153 -GRDLHVMDPEAG  164 (337)
T ss_dssp             -SSSEEEEETTTT
T ss_pred             -CCeEEEEECCCC
Confidence             356999998654

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.08  E-value=6.7e-08  Score=95.53  Aligned_cols=242  Identities=14%  Similarity=0.095  Sum_probs=149.4

Q ss_pred             EecCCCCCCCccEEEcCCC-cEEEEecCCeEEEEe-C-C--ceEEEEecCCCcccCeEEc----CCCC-EEEEeCC-CcE
Q 017371           72 KVGEGSVNHPEDASMDKNG-VIYTATRDGWIKRLQ-D-G--TWVNWKFIDSQTLVGLTST----KEGH-LIICDNA-NGL  140 (372)
Q Consensus        72 ~~~~g~~~~p~~i~~d~~G-~l~v~~~~g~i~~~~-~-g--~~~~~~~~~~~p~~gl~~d----~dG~-l~v~~~~-~gv  140 (372)
                      .+..|  ..|++++++++| .+|+++.+|.|..|| . .  +...-...+..|. +++++    +||+ +||++.. ..+
T Consensus       192 ~i~~g--~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~-~ia~s~~~~pDGk~l~v~n~~~~~v  268 (567)
T 1qks_A          192 VLDTG--YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEAR-SIETSKMEGWEDKYAIAGAYWPPQY  268 (567)
T ss_dssp             EEECS--SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEE-EEEECCSTTCTTTEEEEEEEETTEE
T ss_pred             EEeCC--CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCc-eeEEccccCCCCCEEEEEEccCCeE
Confidence            44444  378999999998 589999899999999 3 2  2222234466789 99999    5995 8888655 557


Q ss_pred             EEEc-CCC--cEEEeee-c--CCc---ccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeE
Q 017371          141 HKVS-EDG--VENFLSY-V--NGS---KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT  211 (372)
Q Consensus       141 ~~~~-~~g--~~~l~~~-~--~~~---~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~  211 (372)
                      ..+| .+.  +..+... .  .+.   +...+..+...+++..|+..                ....|.|+.+|..+.+.
T Consensus       269 ~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~----------------~~~~g~v~~vd~~~~~~  332 (567)
T 1qks_A          269 VIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVN----------------VKETGKILLVDYTDLNN  332 (567)
T ss_dssp             EEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEE----------------ETTTTEEEEEETTCSSE
T ss_pred             EEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEE----------------ecCCCeEEEEecCCCcc
Confidence            8888 444  3333221 1  110   01123456666666555432                23578999999765432


Q ss_pred             EEE--eCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeec-cCCCCCC-ceeE-EcCC-CCEEEEEecC
Q 017371          212 TLV--ADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFA-ENLPGAP-DNIN-LAPD-GTFWIAIIKL  285 (372)
Q Consensus       212 ~~~--~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~-~~~~g~p-~~i~-~d~~-G~lwva~~~~  285 (372)
                      ..+  ...-.++.++.|++||+++|++....++|..++.+..++... .-. ...+ .| .+.. ++++ |.+|++....
T Consensus       333 ~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~-i~vgg~~P-hpg~g~~~~~p~~g~v~~t~~~g  410 (567)
T 1qks_A          333 LKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAI-EDTGGQTP-HPGRGANFVHPTFGPVWATSHMG  410 (567)
T ss_dssp             EEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEE-EECSSSSB-CCTTCEEEEETTTEEEEEEEBSS
T ss_pred             ceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEE-EeccCcCC-CCccceeeECCCCCcEEEeCCCC
Confidence            111  122356778999999999999998889999999875432221 111 1111 12 3544 5776 6899877531


Q ss_pred             chhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEECCC--------CcEEEEEECCCCCeeccceeeEE--ECCE
Q 017371          286 DARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED--------GTIIRNLVDPTGQLMSFVTSGLQ--VDNH  355 (372)
Q Consensus       286 ~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~--------g~~~~~~~~~~g~~~~~~t~~~~--~~g~  355 (372)
                                                       .+.|..++.+        .++++.+....+.    ...+..  ++.+
T Consensus       411 ---------------------------------~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g----~~~i~~~p~~~~  453 (567)
T 1qks_A          411 ---------------------------------DDSVALIGTDPEGHPDNAWKILDSFPALGGG----SLFIKTHPNSQY  453 (567)
T ss_dssp             ---------------------------------SSEEEEEECCTTTCTTTBTSEEEEEECSCSC----CCCEECCTTCSE
T ss_pred             ---------------------------------CCeEEEecCCCCCCccccCEEEEEEecCCCC----CEEEEeCCCCCe
Confidence                                             2456666643        4677777654221    112223  3468


Q ss_pred             EEEEeCC------CCeEEEEeC
Q 017371          356 LYVISLT------SNFIGKVQL  371 (372)
Q Consensus       356 L~igs~~------~~~i~~~~~  371 (372)
                      ||+.+..      ++.|+++++
T Consensus       454 l~v~~~~~~~~~~~~~v~v~d~  475 (567)
T 1qks_A          454 LYVDATLNPEAEISGSVAVFDI  475 (567)
T ss_dssp             EEEECTTCSSHHHHTCEEEEEG
T ss_pred             EEEecCCCCCcccCceEEEEEC
Confidence            9998853      359999985

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.07  E-value=5.4e-07  Score=81.48  Aligned_cols=183  Identities=14%  Similarity=0.171  Sum_probs=115.8

Q ss_pred             CCCCCCccEEEcCCCc-EEEEecCCeEEEEe--CCceEEEEecC-CCcccCeEEcCCCCEEEEeCCC-cEEEEc-CCC--
Q 017371           76 GSVNHPEDASMDKNGV-IYTATRDGWIKRLQ--DGTWVNWKFID-SQTLVGLTSTKEGHLIICDNAN-GLHKVS-EDG--  147 (372)
Q Consensus        76 g~~~~p~~i~~d~~G~-l~v~~~~g~i~~~~--~g~~~~~~~~~-~~p~~gl~~d~dG~l~v~~~~~-gv~~~~-~~g--  147 (372)
                      |.-....++++.++|. |..+..+|.|..++  +++........ .... .+++.++|+++++.... .+..++ .++  
T Consensus        21 gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~   99 (312)
T 4ery_A           21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-DVAWSSDSNLLVSASDDKTLKIWDVSSGKC   99 (312)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE-EEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred             ccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceE-EEEEcCCCCEEEEECCCCEEEEEECCCCcE
Confidence            4445677899999886 55566899999998  56544433322 3345 89999999877665444 466677 555  


Q ss_pred             cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCc-cCcceEEE
Q 017371          148 VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF-YFANGVAL  226 (372)
Q Consensus       148 ~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~-~~~~gi~~  226 (372)
                      ...+...     ...+..+++.+++++.++-.                 .++.|..+|..+++........ .....+++
T Consensus       100 ~~~~~~~-----~~~v~~~~~~~~~~~l~s~~-----------------~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~  157 (312)
T 4ery_A          100 LKTLKGH-----SNYVFCCNFNPQSNLIVSGS-----------------FDESVRIWDVKTGKCLKTLPAHSDPVSAVHF  157 (312)
T ss_dssp             EEEEECC-----SSCEEEEEECSSSSEEEEEE-----------------TTSCEEEEETTTCCEEEEECCCSSCEEEEEE
T ss_pred             EEEEcCC-----CCCEEEEEEcCCCCEEEEEe-----------------CCCcEEEEECCCCEEEEEecCCCCcEEEEEE
Confidence            3333211     12456788999998777532                 4678999998877654444332 23457889


Q ss_pred             ecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 017371          227 SRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       227 ~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~  284 (372)
                      +++++.++.+. .++.|..+++...+  ....+..........++++++|++.++...
T Consensus       158 ~~~~~~l~~~~-~d~~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  212 (312)
T 4ery_A          158 NRDGSLIVSSS-YDGLCRIWDTASGQ--CLKTLIDDDNPPVSFVKFSPNGKYILAATL  212 (312)
T ss_dssp             CTTSSEEEEEE-TTSCEEEEETTTCC--EEEEECCSSCCCEEEEEECTTSSEEEEEET
T ss_pred             cCCCCEEEEEe-CCCcEEEEECCCCc--eeeEEeccCCCceEEEEECCCCCEEEEEcC
Confidence            99999665554 46678888875432  122222222222455889999987776654

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.06  E-value=5.7e-08  Score=84.66  Aligned_cols=154  Identities=15%  Similarity=0.134  Sum_probs=109.8

Q ss_pred             cccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCC--ccCcceEEEecCCCEEEEEe
Q 017371          160 LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG--FYFANGVALSRDEDYVVVCE  237 (372)
Q Consensus       160 ~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~--~~~~~gi~~~~dg~~l~v~~  237 (372)
                      ..+..+|.++. +++|++...               .+...|.++|++++++......  -.+..|+++  +++.||+..
T Consensus        20 ~~ftqGL~~~~-~~LyestG~---------------~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~--~~~~ly~lt   81 (243)
T 3mbr_X           20 TAFTEGLFYLR-GHLYESTGE---------------TGRSSVRKVDLETGRILQRAEVPPPYFGAGIVA--WRDRLIQLT   81 (243)
T ss_dssp             TCCEEEEEEET-TEEEEEECC---------------TTSCEEEEEETTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEE
T ss_pred             ccccccEEEEC-CEEEEECCC---------------CCCceEEEEECCCCCEEEEEeCCCCcceeEEEE--eCCEEEEEE
Confidence            35777999976 899998642               1345899999999988764432  334445554  577899999


Q ss_pred             CCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCC
Q 017371          238 SWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLG  317 (372)
Q Consensus       238 ~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~  317 (372)
                      ...+.+++|+.++.  .....+.  .++.+-+++.| .+.||+++.+                                 
T Consensus        82 w~~~~v~v~D~~tl--~~~~ti~--~~~~Gwglt~d-g~~L~vSdgs---------------------------------  123 (243)
T 3mbr_X           82 WRNHEGFVYDLATL--TPRARFR--YPGEGWALTSD-DSHLYMSDGT---------------------------------  123 (243)
T ss_dssp             SSSSEEEEEETTTT--EEEEEEE--CSSCCCEEEEC-SSCEEEECSS---------------------------------
T ss_pred             eeCCEEEEEECCcC--cEEEEEe--CCCCceEEeeC-CCEEEEECCC---------------------------------
Confidence            99999999998653  2222332  22334566655 3589999854                                 


Q ss_pred             CceEEEEECCC-CcEEEEEECC-CCCeeccceeeEEECCEEEEEeCCCCeEEEEeC
Q 017371          318 GGAHLIHVAED-GTIIRNLVDP-TGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL  371 (372)
Q Consensus       318 ~~~~v~~~~~~-g~~~~~~~~~-~g~~~~~~t~~~~~~g~L~igs~~~~~i~~~~~  371 (372)
                        +.|..+|++ .+++..+... +|..+.....+...+|+||...+..+.|.+||.
T Consensus       124 --~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw~s~~I~vIDp  177 (243)
T 3mbr_X          124 --AVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANVWLTSRIARIDP  177 (243)
T ss_dssp             --SEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTTTEEEEECT
T ss_pred             --CeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEEECCCCeEEEEEC
Confidence              579999976 6777776552 455555666777779999999999999999985

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.05  E-value=5.5e-07  Score=84.37  Aligned_cols=243  Identities=10%  Similarity=0.034  Sum_probs=139.6

Q ss_pred             eEecCCCCCCCccEEEcCCC-cEEEEec----------CCeEEEEe--CCceE-EEEec-------CCCcccCeEEcCCC
Q 017371           71 IKVGEGSVNHPEDASMDKNG-VIYTATR----------DGWIKRLQ--DGTWV-NWKFI-------DSQTLVGLTSTKEG  129 (372)
Q Consensus        71 ~~~~~g~~~~p~~i~~d~~G-~l~v~~~----------~g~i~~~~--~g~~~-~~~~~-------~~~p~~gl~~d~dG  129 (372)
                      ..+..|  ..| ++++++|| .+|+++.          ++.|..||  +++.. .+...       ...|. +++++|||
T Consensus        61 ~~i~~g--~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~-~~~~spDG  136 (373)
T 2mad_H           61 GHVNGG--FLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSW-MNANTPNN  136 (373)
T ss_pred             EEecCC--CCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCcc-ceEECCCC
Confidence            345555  368 99999998 6999872          46688998  44433 22222       24688 99999999


Q ss_pred             C-EEEEeCC--CcEEEEcCCCcEEEeeecCCcccccccceEEccCC-cEEEEeCCCCCCCcccccccccccCCCeEEEEe
Q 017371          130 H-LIICDNA--NGLHKVSEDGVENFLSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYD  205 (372)
Q Consensus       130 ~-l~v~~~~--~gv~~~~~~g~~~l~~~~~~~~~~~~~~l~~d~dG-~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d  205 (372)
                      + ||+++..  ..|..+| ...+.+....+.     +..+.+.++| +.|++..                 ++|++..+|
T Consensus       137 ~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~-----~~~~~~~~~~~~~~~~~~-----------------~dg~~~~vd  193 (373)
T 2mad_H          137 ADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS-----PTCYHIHPGAPSTFYLLC-----------------AQGGLAKTD  193 (373)
T ss_pred             CEEEEEecCCCCeEEEEE-CCCCEEeEEcCC-----CceEEEEeCCCceEEEEc-----------------CCCCEEEEE
Confidence            5 8888642  4588888 542222110111     1123344444 5666543                 567888888


Q ss_pred             CCCCeEEEEeC-----CccCc--ceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeec--c----CCCCCCce---
Q 017371          206 PSSNITTLVAD-----GFYFA--NGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFA--E----NLPGAPDN---  269 (372)
Q Consensus       206 ~~t~~~~~~~~-----~~~~~--~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~--~----~~~g~p~~---  269 (372)
                      . +++......     .-..|  ....+.++++.+|+.. ....++.++..+........+.  .    ...-.|.+   
T Consensus       194 ~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~  271 (373)
T 2mad_H          194 H-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV-YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQ  271 (373)
T ss_pred             C-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEc-CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEe
Confidence            8 666542211     01111  2234566666666665 3557998888653221111111  0    01113566   


Q ss_pred             eEEcCCC-CEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEECCC-CcEEEEEECCCCCeeccce
Q 017371          270 INLAPDG-TFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED-GTIIRNLVDPTGQLMSFVT  347 (372)
Q Consensus       270 i~~d~~G-~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~-g~~~~~~~~~~g~~~~~~t  347 (372)
                      ++++++| ++||+.... ....                        -....+.|..+|.. ++++..+....     .+.
T Consensus       272 ~~~s~d~~~lyV~~~~~-~~~~------------------------~~~~~~~V~VID~~t~~vv~~i~~g~-----~p~  321 (373)
T 2mad_H          272 VAYLKSSDGIYLLTSEQ-SAWK------------------------LHAAAKEVTSVTGLVGQTSSQISLGH-----DVD  321 (373)
T ss_pred             EEECCCCCEEEEEeccC-Cccc------------------------ccCCCCeEEEEECCCCEEEEEEECCC-----CcC
Confidence            8889987 699987531 0000                        00113578889965 67778775532     244


Q ss_pred             eeEEE--CC-EEEEEeCCCCeEEEEeCC
Q 017371          348 SGLQV--DN-HLYVISLTSNFIGKVQLS  372 (372)
Q Consensus       348 ~~~~~--~g-~L~igs~~~~~i~~~~~~  372 (372)
                      ++...  +. .+|+++...+.|.++|++
T Consensus       322 ~i~~s~Dg~~~l~v~~~~~~~V~ViD~~  349 (373)
T 2mad_H          322 AISVAQDGGPDLYALSAGTEVLHIYDAG  349 (373)
T ss_pred             eEEECCCCCeEEEEEcCCCCeEEEEECC
Confidence            55554  45 578777778999999863

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.03  E-value=1.5e-06  Score=79.41  Aligned_cols=234  Identities=14%  Similarity=0.108  Sum_probs=146.6

Q ss_pred             CCCCCCCccEEEcCCCcEE-EEecCCeEEEEe--CCc-eEEEEecCCCcccCeEEcCCCCEEEEeCCCc-EEEEc-CCCc
Q 017371           75 EGSVNHPEDASMDKNGVIY-TATRDGWIKRLQ--DGT-WVNWKFIDSQTLVGLTSTKEGHLIICDNANG-LHKVS-EDGV  148 (372)
Q Consensus        75 ~g~~~~p~~i~~d~~G~l~-v~~~~g~i~~~~--~g~-~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~g-v~~~~-~~g~  148 (372)
                      .|.-....++++.+++.+. .+..++.|..|+  +++ ...+........ .+++.|+|+.+++....| +..++ .++.
T Consensus        77 ~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~-~~~~spdg~~l~~g~~dg~v~i~~~~~~~  155 (321)
T 3ow8_A           77 EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAW-TLAFSPDSQYLATGTHVGKVNIFGVESGK  155 (321)
T ss_dssp             CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCC-CEEECTTSSEEEEECTTSEEEEEETTTCS
T ss_pred             ccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEE-EEEECCCCCEEEEEcCCCcEEEEEcCCCc
Confidence            3444456678888887554 455899999999  554 333433334556 899999998777655544 66667 5552


Q ss_pred             EEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCcc-CcceEEEe
Q 017371          149 ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFY-FANGVALS  227 (372)
Q Consensus       149 ~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~-~~~gi~~~  227 (372)
                      ........+   ..+..+++.++|+..++-                 ..++.|..+|..+++......+.. ....++++
T Consensus       156 ~~~~~~~~~---~~v~~~~~spdg~~lasg-----------------~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s  215 (321)
T 3ow8_A          156 KEYSLDTRG---KFILSIAYSPDGKYLASG-----------------AIDGIINIFDIATGKLLHTLEGHAMPIRSLTFS  215 (321)
T ss_dssp             EEEEEECSS---SCEEEEEECTTSSEEEEE-----------------ETTSCEEEEETTTTEEEEEECCCSSCCCEEEEC
T ss_pred             eeEEecCCC---ceEEEEEECCCCCEEEEE-----------------cCCCeEEEEECCCCcEEEEEcccCCceeEEEEc
Confidence            211111111   346688999999877752                 256789999998887655554433 34689999


Q ss_pred             cCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcC
Q 017371          228 RDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYP  307 (372)
Q Consensus       228 ~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p  307 (372)
                      ||++.| ++...+..|..+++...+.  ...+. ...+....+++.++|.+.++...                       
T Consensus       216 pd~~~l-~s~s~dg~i~iwd~~~~~~--~~~~~-~h~~~v~~~~~sp~~~~l~s~s~-----------------------  268 (321)
T 3ow8_A          216 PDSQLL-VTASDDGYIKIYDVQHANL--AGTLS-GHASWVLNVAFCPDDTHFVSSSS-----------------------  268 (321)
T ss_dssp             TTSCEE-EEECTTSCEEEEETTTCCE--EEEEC-CCSSCEEEEEECTTSSEEEEEET-----------------------
T ss_pred             CCCCEE-EEEcCCCeEEEEECCCcce--eEEEc-CCCCceEEEEECCCCCEEEEEeC-----------------------
Confidence            999855 4555566788888764321  12222 23334567899999987776655                       


Q ss_pred             ccccccccCCCceEEEEEC-CCCcEEEEEECCCCCeeccceeeEEE-CCEEEEEeCCCCeEEEEeC
Q 017371          308 KLFSQFITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL  371 (372)
Q Consensus       308 ~~~~~~~~~~~~~~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~L~igs~~~~~i~~~~~  371 (372)
                                 .+.|..+| .+++.+..+....+    .+.++... ++...+..-....|.+++.
T Consensus       269 -----------D~~v~iwd~~~~~~~~~~~~h~~----~v~~v~~s~~g~~l~s~~~d~~i~vwd~  319 (321)
T 3ow8_A          269 -----------DKSVKVWDVGTRTCVHTFFDHQD----QVWGVKYNGNGSKIVSVGDDQEIHIYDC  319 (321)
T ss_dssp             -----------TSCEEEEETTTTEEEEEECCCSS----CEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred             -----------CCcEEEEeCCCCEEEEEEcCCCC----cEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence                       34566666 35777777755433    46777775 4443344444566766654

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.02  E-value=6.4e-08  Score=91.51  Aligned_cols=187  Identities=9%  Similarity=0.055  Sum_probs=115.2

Q ss_pred             cEEEEe-cCCeEEEEe-C-C----ceEEEEe--------cCCCcccCeEEcCCCCEEEEeCCC-------cEEEEc-CCC
Q 017371           91 VIYTAT-RDGWIKRLQ-D-G----TWVNWKF--------IDSQTLVGLTSTKEGHLIICDNAN-------GLHKVS-EDG  147 (372)
Q Consensus        91 ~l~v~~-~~g~i~~~~-~-g----~~~~~~~--------~~~~p~~gl~~d~dG~l~v~~~~~-------gv~~~~-~~g  147 (372)
                      +||+.. .+++|+.+| . .    ++.....        ...+|. +++..|+| |||+..+.       ++..+| .++
T Consensus        97 ~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph-~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~  174 (462)
T 2ece_A           97 FLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLH-TVHCGPDA-IYISALGNEEGEGPGGILMLDHYSF  174 (462)
T ss_dssp             EEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEE-EEEECSSC-EEEEEEEETTSCSCCEEEEECTTTC
T ss_pred             EEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCccc-ceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCC
Confidence            788887 788999999 2 2    2222221        123788 89999999 99975443       699999 444


Q ss_pred             --cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcc-----cccccccccCCCeEEEEeCCCCeEEEEeCC---
Q 017371          148 --VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHE-----YCLDILEGKPHGQLLKYDPSSNITTLVADG---  217 (372)
Q Consensus       148 --~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~-----~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~---  217 (372)
                        +..+.  ....+..+..++.+.+++++.++..   |+.-.     +....++.....+|..||.++++.......   
T Consensus       175 ~v~~~~~--~~~~~~~~~Yd~~~~p~~~~mvsS~---wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~  249 (462)
T 2ece_A          175 EPLGKWE--IDRGDQYLAYDFWWNLPNEVLVSSE---WAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEE  249 (462)
T ss_dssp             CEEEECC--SBCTTCCCCCCEEEETTTTEEEECB---CCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTT
T ss_pred             eEEEEEc--cCCCCccccceEEECCCCCEEEEcc---CcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCC
Confidence              33222  1222334566788899998766632   22100     110111114567899999987765443322   


Q ss_pred             ccCcceEEE--ecCCCEEEEEeC-----CCCeEEEEEccCCCCcceeee-------ccCC----------CCCCceeEEc
Q 017371          218 FYFANGVAL--SRDEDYVVVCES-----WKFRCRKYWLKGERKGKLETF-------AENL----------PGAPDNINLA  273 (372)
Q Consensus       218 ~~~~~gi~~--~~dg~~l~v~~~-----~~~~i~~~~~~g~~~~~~~~~-------~~~~----------~g~p~~i~~d  273 (372)
                      -..|..+.+  +|+++++|++..     ..+.|++++.++........+       ...+          ++.|.+|.++
T Consensus       250 g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS  329 (462)
T 2ece_A          250 NRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDIS  329 (462)
T ss_dssp             EEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEEC
T ss_pred             CCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEEC
Confidence            135666766  999999999887     777888776654221111110       0011          3568999999


Q ss_pred             CCC-CEEEEEec
Q 017371          274 PDG-TFWIAIIK  284 (372)
Q Consensus       274 ~~G-~lwva~~~  284 (372)
                      +|| .|||+++.
T Consensus       330 ~DGrfLYVSnrg  341 (462)
T 2ece_A          330 LDDKFLYLSLWG  341 (462)
T ss_dssp             TTSCEEEEEETT
T ss_pred             CCCCEEEEEeCC
Confidence            999 59999987

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.02  E-value=8.4e-07  Score=80.37  Aligned_cols=224  Identities=11%  Similarity=0.017  Sum_probs=142.4

Q ss_pred             CCccEEEcCCCc-EEEEecCCeEEEEe--CCce---EEEEecCCCcccCeEEcCCCCEEEE-eCCCcEEEEc-CCC--cE
Q 017371           80 HPEDASMDKNGV-IYTATRDGWIKRLQ--DGTW---VNWKFIDSQTLVGLTSTKEGHLIIC-DNANGLHKVS-EDG--VE  149 (372)
Q Consensus        80 ~p~~i~~d~~G~-l~v~~~~g~i~~~~--~g~~---~~~~~~~~~p~~gl~~d~dG~l~v~-~~~~gv~~~~-~~g--~~  149 (372)
                      ...++++.++|. |+++..+|.|..++  +++.   ..+........ .+++.++|+++++ .....+..++ .++  ..
T Consensus        99 ~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~  177 (337)
T 1gxr_A           99 YIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACY-ALAISPDSKVCFSCCSDGNIAVWDLHNQTLVR  177 (337)
T ss_dssp             BEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEE-EEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred             cEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceE-EEEECCCCCEEEEEeCCCcEEEEeCCCCceee
Confidence            456788998885 66667899999999  4442   22222233445 8999999976555 4444578888 555  33


Q ss_pred             EEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecC
Q 017371          150 NFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRD  229 (372)
Q Consensus       150 ~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~d  229 (372)
                      .+..  .   ...+..+++.++|+.+++-.                 .++.|..+|..+++.............++++++
T Consensus       178 ~~~~--~---~~~i~~~~~~~~~~~l~~~~-----------------~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~  235 (337)
T 1gxr_A          178 QFQG--H---TDGASCIDISNDGTKLWTGG-----------------LDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPT  235 (337)
T ss_dssp             EECC--C---SSCEEEEEECTTSSEEEEEE-----------------TTSEEEEEETTTTEEEEEEECSSCEEEEEECTT
T ss_pred             eeec--c---cCceEEEEECCCCCEEEEEe-----------------cCCcEEEEECCCCceEeeecCCCceEEEEECCC
Confidence            2211  1   13467889999997666522                 467899999887776554444444567899999


Q ss_pred             CCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCcc
Q 017371          230 EDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKL  309 (372)
Q Consensus       230 g~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~  309 (372)
                      ++.++++. .++.|..+++.+.+.   ..+. ...+....+++.++|++.++...                         
T Consensus       236 ~~~l~~~~-~~~~i~~~~~~~~~~---~~~~-~~~~~v~~~~~~~~~~~l~~~~~-------------------------  285 (337)
T 1gxr_A          236 GEWLAVGM-ESSNVEVLHVNKPDK---YQLH-LHESCVLSLKFAYCGKWFVSTGK-------------------------  285 (337)
T ss_dssp             SSEEEEEE-TTSCEEEEETTSSCE---EEEC-CCSSCEEEEEECTTSSEEEEEET-------------------------
T ss_pred             CCEEEEEc-CCCcEEEEECCCCCe---EEEc-CCccceeEEEECCCCCEEEEecC-------------------------
Confidence            99777665 456798898865431   1222 23344678999999987776655                         


Q ss_pred             ccccccCCCceEEEEEC-CCCcEEEEEECCCCCeeccceeeEEE-CC-EEEEEeCCCCeEEEEeC
Q 017371          310 FSQFITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQV-DN-HLYVISLTSNFIGKVQL  371 (372)
Q Consensus       310 ~~~~~~~~~~~~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~-~g-~L~igs~~~~~i~~~~~  371 (372)
                               .+.+..++ .+++.+......     ..++++... ++ .|+.++ ....|.++++
T Consensus       286 ---------dg~i~~~~~~~~~~~~~~~~~-----~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~  335 (337)
T 1gxr_A          286 ---------DNLLNAWRTPYGASIFQSKES-----SSVLSCDISVDDKYIVTGS-GDKKATVYEV  335 (337)
T ss_dssp             ---------TSEEEEEETTTCCEEEEEECS-----SCEEEEEECTTSCEEEEEE-TTSCEEEEEE
T ss_pred             ---------CCcEEEEECCCCeEEEEecCC-----CcEEEEEECCCCCEEEEec-CCCeEEEEEE
Confidence                     45777777 346666444322     236666665 34 455555 5566776654

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.97  E-value=3.7e-08  Score=91.94  Aligned_cols=223  Identities=10%  Similarity=-0.066  Sum_probs=128.5

Q ss_pred             CceEecCCCCCCCccEEEcCCC-cEEEEec----------CCeEEEEe--CCceE-EEEec-------CCCcccCeEEcC
Q 017371           69 DFIKVGEGSVNHPEDASMDKNG-VIYTATR----------DGWIKRLQ--DGTWV-NWKFI-------DSQTLVGLTSTK  127 (372)
Q Consensus        69 ~~~~~~~g~~~~p~~i~~d~~G-~l~v~~~----------~g~i~~~~--~g~~~-~~~~~-------~~~p~~gl~~d~  127 (372)
                      .+..+..|.  .| +++++++| .+|+++.          ++.|..||  +++.. ++.-+       +..|. +++++|
T Consensus        58 v~~~i~vG~--~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~-~ia~Sp  133 (368)
T 1mda_H           58 TLGHSLGAF--LS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVH-IIGNCA  133 (368)
T ss_dssp             EEEEEEECT--TC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTT-SEEECT
T ss_pred             EEEEEeCCC--CC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcc-eEEEcC
Confidence            344555563  68 89999988 8999972          57799999  55544 33322       24699 999999


Q ss_pred             CC-CEEEEeCC--CcEEE--Ec-CCCcEEEeeecCCcccccccc----eEEccCCcEEEEeCCC------CCC-------
Q 017371          128 EG-HLIICDNA--NGLHK--VS-EDGVENFLSYVNGSKLRFAND----VVEASDGSLYFTVSSS------KYL-------  184 (372)
Q Consensus       128 dG-~l~v~~~~--~gv~~--~~-~~g~~~l~~~~~~~~~~~~~~----l~~d~dG~i~vtd~~~------~~~-------  184 (372)
                      || .|||++..  ..+..  +| .+ ...+..  ++.....+.+    ++..+||++.+.|...      +..       
T Consensus       134 DGk~lyVan~~~~~~v~V~~iD~~t-v~~i~v--~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i  210 (368)
T 1mda_H          134 SSACLLFFLFGSSAAAGLSVPGASD-DQLTKS--ASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQ  210 (368)
T ss_dssp             TSSCEEEEECSSSCEEEEEETTTEE-EEEEEC--SSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTS
T ss_pred             CCCEEEEEccCCCCeEEEEEEchhh-ceEEEC--CCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeee
Confidence            99 59999753  34656  66 33 222211  1100011111    3344555443333321      000       


Q ss_pred             -Cc--cc----ccccccccCCCeEEEEeCCCCeEEEEeC----------CccCcce---EEEecCCCEEEEEeC---C--
Q 017371          185 -PH--EY----CLDILEGKPHGQLLKYDPSSNITTLVAD----------GFYFANG---VALSRDEDYVVVCES---W--  239 (372)
Q Consensus       185 -~~--~~----~~~~~~~~~~g~v~~~d~~t~~~~~~~~----------~~~~~~g---i~~~~dg~~l~v~~~---~--  239 (372)
                       ..  ..    ....+.... +.|+.+|..+++.+.+..          ....|.|   +++++|++++|++..   +  
T Consensus       211 ~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~  289 (368)
T 1mda_H          211 NCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSC  289 (368)
T ss_dssp             CBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCT
T ss_pred             eCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcc
Confidence             00  00    000001111 668888876544333221          1123455   889999999999764   3  


Q ss_pred             ---CCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCC-EEEEEe-cCchhHHHHhhcchhHHHHHHhcCccccccc
Q 017371          240 ---KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAII-KLDARRMKILNSSKLIKHVLAAYPKLFSQFI  314 (372)
Q Consensus       240 ---~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwva~~-~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~  314 (372)
                         .+.+..+|....+...  .+.  ..+.|.+|++++||+ +|+++. .                              
T Consensus       290 ~~~~~~~~ViD~~t~~vv~--~i~--vg~~p~gi~~s~Dg~~l~va~~~~------------------------------  335 (368)
T 1mda_H          290 LAAAENTSSVTASVGQTSG--PIS--NGHDSDAIIAAQDGASDNYANSAG------------------------------  335 (368)
T ss_dssp             TSCEEEEEEEESSSCCEEE--CCE--EEEEECEEEECCSSSCEEEEEETT------------------------------
T ss_pred             cccCCCEEEEECCCCeEEE--EEE--CCCCcceEEECCCCCEEEEEccCC------------------------------
Confidence               3467788886543211  111  122599999999995 999998 4                              


Q ss_pred             cCCCceEEEEECC-CCcEEEEEEC
Q 017371          315 TLGGGAHLIHVAE-DGTIIRNLVD  337 (372)
Q Consensus       315 ~~~~~~~v~~~~~-~g~~~~~~~~  337 (372)
                          .+.|..+|. +++++..+..
T Consensus       336 ----~~~VsVID~~t~kvv~~I~v  355 (368)
T 1mda_H          336 ----TEVLDIYDAASDQDQSSVEL  355 (368)
T ss_dssp             ----TTEEEEEESSSCEEEEECCC
T ss_pred             ----CCeEEEEECCCCcEEEEEEC
Confidence                468888984 5777777654

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.96  E-value=1.1e-07  Score=90.00  Aligned_cols=188  Identities=12%  Similarity=0.135  Sum_probs=114.7

Q ss_pred             CCCCccEEEcCCCcEEEEe-cC------CeEEEEe--CCce-EEEEec---CCCcccCeEEcCCCCEEEEeC--------
Q 017371           78 VNHPEDASMDKNGVIYTAT-RD------GWIKRLQ--DGTW-VNWKFI---DSQTLVGLTSTKEGHLIICDN--------  136 (372)
Q Consensus        78 ~~~p~~i~~d~~G~l~v~~-~~------g~i~~~~--~g~~-~~~~~~---~~~p~~gl~~d~dG~l~v~~~--------  136 (372)
                      ...|+.+...++| +|++. .+      |.|..+|  ++++ .+|...   .+.++ .+.+.++++.+++..        
T Consensus       137 ~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Y-d~~~~p~~~~mvsS~wg~p~~~~  214 (462)
T 2ece_A          137 YSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAY-DFWWNLPNEVLVSSEWAVPNTIE  214 (462)
T ss_dssp             EEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCC-CEEEETTTTEEEECBCCCHHHHT
T ss_pred             CCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccc-eEEECCCCCEEEEccCcCccccc
Confidence            4589999999999 99976 33      6899999  4554 344322   12345 577789998766653        


Q ss_pred             ------------CCcEEEEc-CCC--cEEEeeecCCcccccccceEE--ccCC-cEEEEeC-CCCCCCcccccccccccC
Q 017371          137 ------------ANGLHKVS-EDG--VENFLSYVNGSKLRFANDVVE--ASDG-SLYFTVS-SSKYLPHEYCLDILEGKP  197 (372)
Q Consensus       137 ------------~~gv~~~~-~~g--~~~l~~~~~~~~~~~~~~l~~--d~dG-~i~vtd~-~~~~~~~~~~~~~~~~~~  197 (372)
                                  ...|..++ .++  ...+..   +.....|..|.+  +++| .+|++.. +.             ..-
T Consensus       215 ~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~v---g~~g~~P~~i~f~~~Pdg~~aYV~~e~~~-------------~~L  278 (462)
T 2ece_A          215 DGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTL---GEENRMALELRPLHDPTKLMGFINMVVSL-------------KDL  278 (462)
T ss_dssp             TCCCTTTHHHHSCCEEEEEETTTTEEEEEEES---CTTEEEEEEEEECSSTTCCEEEEEEEEET-------------TTC
T ss_pred             cccchhhhhhccCCEEEEEECCCCcEeeEEec---CCCCCccceeEeeECCCCCEEEEEEeeec-------------cCC
Confidence                        35688888 555  333322   111235566655  8998 4777542 00             001


Q ss_pred             CCeEEEEeCCCCeEEEEe-----C----C------------ccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCC-Ccc
Q 017371          198 HGQLLKYDPSSNITTLVA-----D----G------------FYFANGVALSRDEDYVVVCESWKFRCRKYWLKGER-KGK  255 (372)
Q Consensus       198 ~g~v~~~d~~t~~~~~~~-----~----~------------~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~-~~~  255 (372)
                      ++.|+.+..+.++++...     .    .            ...|.+|.+++||++||+++.+.+.|..|++.... ...
T Consensus       279 ss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~l  358 (462)
T 2ece_A          279 SSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVL  358 (462)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEE
T ss_pred             CceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEE
Confidence            234443322224332211     1    0            14578999999999999999999999999986332 111


Q ss_pred             eee-ecc------------CCCCCCceeEEcCCC-CEEEEEe
Q 017371          256 LET-FAE------------NLPGAPDNINLAPDG-TFWIAII  283 (372)
Q Consensus       256 ~~~-~~~------------~~~g~p~~i~~d~~G-~lwva~~  283 (372)
                      ... ...            .+.+.|.++++++|| .+||++.
T Consensus       359 v~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaNs  400 (462)
T 2ece_A          359 TGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTNS  400 (462)
T ss_dssp             EEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEECC
T ss_pred             EEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEcC
Confidence            111 111            122469999999999 5888763

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=98.95  E-value=1.2e-06  Score=86.23  Aligned_cols=224  Identities=13%  Similarity=0.149  Sum_probs=141.3

Q ss_pred             CCCccEEEcCCCc-EEEEecCCeEEEEe-CCce-EEEEecCCCcccCeEEcCCCCEEEEeCC-CcEEEEcCCC--cEEEe
Q 017371           79 NHPEDASMDKNGV-IYTATRDGWIKRLQ-DGTW-VNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVSEDG--VENFL  152 (372)
Q Consensus        79 ~~p~~i~~d~~G~-l~v~~~~g~i~~~~-~g~~-~~~~~~~~~p~~gl~~d~dG~l~v~~~~-~gv~~~~~~g--~~~l~  152 (372)
                      ....++++.++|. |.++..+|.|..++ +++. ..+........ ++++.++|+.+++... ..+..++.++  ...+.
T Consensus       345 ~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~-~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~  423 (577)
T 2ymu_A          345 SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVR-GVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT  423 (577)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEECCSSCEE-EEEECTTSSCEEEEETTSEEEEECTTCCEEEEEE
T ss_pred             CCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeE-EEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEec
Confidence            3456788999885 45566889888888 6653 33333334455 8999999986655444 4466667555  33332


Q ss_pred             eecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCE
Q 017371          153 SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDY  232 (372)
Q Consensus       153 ~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~  232 (372)
                      .. .    ..+..+++.+|++..++-.                 .++.|..+|........+...-.....++++||++.
T Consensus       424 ~~-~----~~v~~~~~s~d~~~l~~~~-----------------~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~  481 (577)
T 2ymu_A          424 GH-S----SSVWGVAFSPDDQTIASAS-----------------DDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQT  481 (577)
T ss_dssp             CC-S----SCEEEEEECTTSSEEEEEE-----------------TTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCE
T ss_pred             CC-C----CCeEEEEECCCCCEEEEEc-----------------CCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCE
Confidence            11 1    2456789999998776532                 467788888764444444433344567899999996


Q ss_pred             EEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccc
Q 017371          233 VVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQ  312 (372)
Q Consensus       233 l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~  312 (372)
                      |..+. .+..|..++.++..   ...+. ...+....+++.++|++.++...                            
T Consensus       482 las~~-~d~~i~iw~~~~~~---~~~~~-~h~~~v~~l~~s~dg~~l~s~~~----------------------------  528 (577)
T 2ymu_A          482 IASAS-DDKTVKLWNRNGQL---LQTLT-GHSSSVRGVAFSPDGQTIASASD----------------------------  528 (577)
T ss_dssp             EEEEE-TTSEEEEEETTSCE---EEEEE-CCSSCEEEEEECTTSSCEEEEET----------------------------
T ss_pred             EEEEe-CCCEEEEEcCCCCE---EEEEe-CCCCCEEEEEEcCCCCEEEEEEC----------------------------
Confidence            65544 45677777765431   22222 22234567899999987666554                            


Q ss_pred             cccCCCceEEEEECCCCcEEEEEECCCCCeeccceeeEEE-CCE-EEEEeCCCCeEEEE
Q 017371          313 FITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV-DNH-LYVISLTSNFIGKV  369 (372)
Q Consensus       313 ~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~-L~igs~~~~~i~~~  369 (372)
                            .+.|..+|.+|+.+..+....+    .++++.+. +|+ |.-++. ...|.++
T Consensus       529 ------dg~v~lwd~~~~~~~~~~~h~~----~v~~~~fs~dg~~l~s~~~-D~~i~~W  576 (577)
T 2ymu_A          529 ------DKTVKLWNRNGQLLQTLTGHSS----SVWGVAFSPDGQTIASASS-DKTVKLW  576 (577)
T ss_dssp             ------TSEEEEECTTSCEEEEEECCSS----CEEEEEECTTSSCEEEEET-TSCEEEE
T ss_pred             ------cCEEEEEeCCCCEEEEEcCCCC----CEEEEEEcCCCCEEEEEeC-CCEEEEe
Confidence                  4678888888999888875443    47777775 444 544443 3445443

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.93  E-value=5.1e-07  Score=79.95  Aligned_cols=164  Identities=13%  Similarity=0.072  Sum_probs=103.1

Q ss_pred             cCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCCEEEEeCCCcEEEEc-CC-C-cEEEeeecCCcccccccceEEccC
Q 017371           97 RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-ED-G-VENFLSYVNGSKLRFANDVVEASD  171 (372)
Q Consensus        97 ~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~-~~-g-~~~l~~~~~~~~~~~~~~l~~d~d  171 (372)
                      .++.|+.++  +++...+....+... ++++.|+|+.++......++.++ .+ + ...+..   +.....+..+++.++
T Consensus        20 ~~~~i~~~d~~~~~~~~~~~~~~~v~-~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~---~~~~~~~~~~~~spd   95 (297)
T 2ojh_A           20 MRSSIEIFNIRTRKMRVVWQTPELFE-APNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDT---GFATICNNDHGISPD   95 (297)
T ss_dssp             CCEEEEEEETTTTEEEEEEEESSCCE-EEEECTTSSEEEEEETTEEEEEESSSCCSCEECCC---TTCCCBCSCCEECTT
T ss_pred             cceeEEEEeCCCCceeeeccCCcceE-eeEECCCCCEEEEEcCCeEEEEeCCCCCCceEecc---ccccccccceEECCC
Confidence            467788888  566665555455566 99999999866665556788888 66 6 443322   111235678999999


Q ss_pred             CcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCCCC--eEEEEEcc
Q 017371          172 GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKF--RCRKYWLK  249 (372)
Q Consensus       172 G~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~--~i~~~~~~  249 (372)
                      |+.+++...             .......|+.++..+++...+.. ......++++||++.++++.....  +|+.++..
T Consensus        96 g~~l~~~~~-------------~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~  161 (297)
T 2ojh_A           96 GALYAISDK-------------VEFGKSAIYLLPSTGGTPRLMTK-NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDID  161 (297)
T ss_dssp             SSEEEEEEC-------------TTTSSCEEEEEETTCCCCEECCS-SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred             CCEEEEEEe-------------CCCCcceEEEEECCCCceEEeec-CCCccceEECCCCCEEEEEECCCCceEEEEEECC
Confidence            975554221             01145789999987776555433 233567889999998886654444  45555554


Q ss_pred             CCCCcceeeeccCCCCCCceeEEcCCCC-EEEEE
Q 017371          250 GERKGKLETFAENLPGAPDNINLAPDGT-FWIAI  282 (372)
Q Consensus       250 g~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwva~  282 (372)
                      +..   ...+. ...+.+..+.++++|+ ++++.
T Consensus       162 ~~~---~~~~~-~~~~~~~~~~~s~dg~~l~~~~  191 (297)
T 2ojh_A          162 SGV---ETRLT-HGEGRNDGPDYSPDGRWIYFNS  191 (297)
T ss_dssp             TCC---EEECC-CSSSCEEEEEECTTSSEEEEEE
T ss_pred             CCc---ceEcc-cCCCccccceECCCCCEEEEEe
Confidence            432   22222 2333467788999997 44444

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.93  E-value=1.1e-07  Score=92.96  Aligned_cols=190  Identities=12%  Similarity=0.054  Sum_probs=116.0

Q ss_pred             CC-cEEEEe-cCCeEEEEe--CCceEEEEe--cCCCcccCeEE-c-CCCC-EEEEeC-----------------CC-cEE
Q 017371           89 NG-VIYTAT-RDGWIKRLQ--DGTWVNWKF--IDSQTLVGLTS-T-KEGH-LIICDN-----------------AN-GLH  141 (372)
Q Consensus        89 ~G-~l~v~~-~~g~i~~~~--~g~~~~~~~--~~~~p~~gl~~-d-~dG~-l~v~~~-----------------~~-gv~  141 (372)
                      || .+|+.+ .+++|.++|  ..+...+..  .+..|. |+++ . |+++ +|+++.                 +. -+.
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~ph-g~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt  178 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIH-GLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  178 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEE-EEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCc-ceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence            55 799988 678999999  445443222  345688 9998 4 6774 666631                 11 355


Q ss_pred             EEc-CCCcEEEee-ecCCcccccccceEEccCC-cEEEEeCCCCCCC---------ccccc--------ccc-cc--cCC
Q 017371          142 KVS-EDGVENFLS-YVNGSKLRFANDVVEASDG-SLYFTVSSSKYLP---------HEYCL--------DIL-EG--KPH  198 (372)
Q Consensus       142 ~~~-~~g~~~l~~-~~~~~~~~~~~~l~~d~dG-~i~vtd~~~~~~~---------~~~~~--------~~~-~~--~~~  198 (372)
                      .+| .+. ++... ...+    .|.++++++|| .+|++...++-+.         .++..        ... .+  ..-
T Consensus       179 vID~~t~-~v~~qI~Vgg----~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i  253 (595)
T 1fwx_A          179 AVDADKW-EVAWQVLVSG----NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL  253 (595)
T ss_dssp             EEETTTT-EEEEEEEESS----CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE
T ss_pred             EEECCCC-eEEEEEEeCC----CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEE
Confidence            666 333 22111 1122    47899999998 5677665432210         01100        000 00  001


Q ss_pred             CeEEEEeCCC--CeE-EEEeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCC------Ccce-eeeccC-CCCCC
Q 017371          199 GQLLKYDPSS--NIT-TLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGER------KGKL-ETFAEN-LPGAP  267 (372)
Q Consensus       199 g~v~~~d~~t--~~~-~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~------~~~~-~~~~~~-~~g~p  267 (372)
                      +.|..+|..+  ++. ......-..|.|+.++|||+++|+++...+.|..|+.+..+      +... ...... ....|
T Consensus       254 ~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP  333 (595)
T 1fwx_A          254 NGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGP  333 (595)
T ss_dssp             TTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCE
T ss_pred             CcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCc
Confidence            4588999986  433 22333446899999999999999999999999999986321      1111 111111 22359


Q ss_pred             ceeEEcCCCCEEEEEec
Q 017371          268 DNINLAPDGTFWIAIIK  284 (372)
Q Consensus       268 ~~i~~d~~G~lwva~~~  284 (372)
                      ..+++|++|++|++..-
T Consensus       334 ~h~aF~~dG~aY~t~~l  350 (595)
T 1fwx_A          334 LHTAFDGRGNAYTSLFL  350 (595)
T ss_dssp             EEEEECTTSEEEEEETT
T ss_pred             ceEEECCCCeEEEEEec
Confidence            99999999999999864

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=98.93  E-value=2e-06  Score=84.47  Aligned_cols=225  Identities=13%  Similarity=0.164  Sum_probs=136.8

Q ss_pred             CCCccEEEcCCCcE-EEEecCCeEEEEe-CC-ceEEEEecCCCcccCeEEcCCCCEEEEeCCCc-EEEEcCCC--cEEEe
Q 017371           79 NHPEDASMDKNGVI-YTATRDGWIKRLQ-DG-TWVNWKFIDSQTLVGLTSTKEGHLIICDNANG-LHKVSEDG--VENFL  152 (372)
Q Consensus        79 ~~p~~i~~d~~G~l-~v~~~~g~i~~~~-~g-~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~g-v~~~~~~g--~~~l~  152 (372)
                      ....++++.++|.. ..+..+|.|..++ ++ ....+........ ++++.++|+..++....| +..++.++  ...+.
T Consensus       304 ~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~-~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~  382 (577)
T 2ymu_A          304 SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVW-GVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT  382 (577)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEE-EEEECTTSSEEEEEETTSEEEEEETTCCEEEEEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEE-EEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEec
Confidence            34567889988854 4555888898888 44 3444433334456 899999998766654445 55556555  33332


Q ss_pred             eecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCE
Q 017371          153 SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDY  232 (372)
Q Consensus       153 ~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~  232 (372)
                      ..     ...+..+++.+||+..++-.                 .++.|..+|........+...-.....++++||++.
T Consensus       383 ~~-----~~~v~~~~~s~dg~~l~~~~-----------------~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~  440 (577)
T 2ymu_A          383 GH-----SSSVRGVAFSPDGQTIASAS-----------------DDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQT  440 (577)
T ss_dssp             CC-----SSCEEEEEECTTSSCEEEEE-----------------TTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSE
T ss_pred             CC-----CCCeEEEEECCCCCEEEEEe-----------------CCCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCE
Confidence            11     12466899999998666522                 457788888654434433333334467899999996


Q ss_pred             EEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccc
Q 017371          233 VVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQ  312 (372)
Q Consensus       233 l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~  312 (372)
                      +..+. .+..|..++.++..   ...+. ........++++++|.+.++...                            
T Consensus       441 l~~~~-~d~~v~~w~~~~~~---~~~~~-~~~~~v~~~~~spd~~~las~~~----------------------------  487 (577)
T 2ymu_A          441 IASAS-DDKTVKLWNRNGQL---LQTLT-GHSSSVRGVAFSPDGQTIASASD----------------------------  487 (577)
T ss_dssp             EEEEE-TTSEEEEEETTSCE---EEEEE-CCSSCEEEEEECTTSCEEEEEET----------------------------
T ss_pred             EEEEc-CCCEEEEEECCCCE---EEEEc-CCCCCEEEEEEcCCCCEEEEEeC----------------------------
Confidence            66554 45678777765431   22222 22334567899999998777655                            


Q ss_pred             cccCCCceEEEEECCCCcEEEEEECCCCCeeccceeeEEE-CCE-EEEEeCCCCeEEEEe
Q 017371          313 FITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV-DNH-LYVISLTSNFIGKVQ  370 (372)
Q Consensus       313 ~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~-L~igs~~~~~i~~~~  370 (372)
                            .+.|..++.+|+.+..+....+    .++++.+. +++ |..++ ....|..++
T Consensus       488 ------d~~i~iw~~~~~~~~~~~~h~~----~v~~l~~s~dg~~l~s~~-~dg~v~lwd  536 (577)
T 2ymu_A          488 ------DKTVKLWNRNGQLLQTLTGHSS----SVRGVAFSPDGQTIASAS-DDKTVKLWN  536 (577)
T ss_dssp             ------TSEEEEEETTSCEEEEEECCSS----CEEEEEECTTSSCEEEEE-TTSEEEEEC
T ss_pred             ------CCEEEEEcCCCCEEEEEeCCCC----CEEEEEEcCCCCEEEEEE-CcCEEEEEe
Confidence                  4566667777887777765433    35556554 333 33333 334454444

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.91  E-value=2.9e-07  Score=86.08  Aligned_cols=135  Identities=11%  Similarity=0.001  Sum_probs=85.1

Q ss_pred             CcEEEEec-----CCeEEEEe--CCceEEEEecCCCcccCeEEcCCCC-EEEEeC----------CCcEEEEc-CCC--c
Q 017371           90 GVIYTATR-----DGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDN----------ANGLHKVS-EDG--V  148 (372)
Q Consensus        90 G~l~v~~~-----~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~-l~v~~~----------~~gv~~~~-~~g--~  148 (372)
                      ..+|+++.     ++.|+.+|  ++++......+..|  +++++|||+ |||++.          ...|..+| .++  .
T Consensus        45 ~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~  122 (386)
T 3sjl_D           45 RRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPT  122 (386)
T ss_dssp             TEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEE
T ss_pred             CEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEE
Confidence            37999984     67899999  56654444444555  499999995 999873          13488898 555  3


Q ss_pred             EEEeeecCCc---ccccccceEEccCC-cEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCC----ccC
Q 017371          149 ENFLSYVNGS---KLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG----FYF  220 (372)
Q Consensus       149 ~~l~~~~~~~---~~~~~~~l~~d~dG-~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~----~~~  220 (372)
                      ..+... .+.   ....|.++++++|| ++|+++..                ..+.|..+|..++++......    ...
T Consensus       123 ~~I~v~-~g~r~~~g~~P~~~a~spDGk~lyVan~~----------------~~~~VsVID~~t~~vv~tI~v~g~~~~~  185 (386)
T 3sjl_D          123 ADIELP-DAPRFLVGTYPWMTSLTPDGKTLLFYQFS----------------PAPAVGVVDLEGKAFKRMLDVPDCYHIF  185 (386)
T ss_dssp             EEEEET-TCCCCCBSCCGGGEEECTTSSEEEEEECS----------------SSCEEEEEETTTTEEEEEEECCSEEEEE
T ss_pred             EEEECC-CccccccCCCCceEEEcCCCCEEEEEEcC----------------CCCeEEEEECCCCcEEEEEECCCcceee
Confidence            333221 111   12368899999999 58998642                357899999998876543321    122


Q ss_pred             cce----EEEecCCCEEEEEeCCCCeE
Q 017371          221 ANG----VALSRDEDYVVVCESWKFRC  243 (372)
Q Consensus       221 ~~g----i~~~~dg~~l~v~~~~~~~i  243 (372)
                      |.|    +++++||+.+|+.....+++
T Consensus       186 P~g~~~~~~~~~DG~~~~v~~~~~g~v  212 (386)
T 3sjl_D          186 PTAPDTFFMHCRDGSLAKVAFGTEGTP  212 (386)
T ss_dssp             EEETTEEEEEETTSCEEEEECCSSSCC
T ss_pred             cCCCceeEEECCCCCEEEEECCCCCeE
Confidence            333    35667777555554332344

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=98.91  E-value=1.7e-06  Score=79.68  Aligned_cols=232  Identities=9%  Similarity=-0.010  Sum_probs=138.9

Q ss_pred             CCccEEEcCCCcEE-EEecCCeEEEEe--CCc---eEEEEecCCCcccCeEEcCCCCEEEEeCC-CcEEEEc-CCC-cEE
Q 017371           80 HPEDASMDKNGVIY-TATRDGWIKRLQ--DGT---WVNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG-VEN  150 (372)
Q Consensus        80 ~p~~i~~d~~G~l~-v~~~~g~i~~~~--~g~---~~~~~~~~~~p~~gl~~d~dG~l~v~~~~-~gv~~~~-~~g-~~~  150 (372)
                      ...++++.++|.+. ++..+|.|..|+  +++   ...+....+... .+++.++|+++++... ..+..++ .++ ...
T Consensus        10 ~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~   88 (372)
T 1k8k_C           10 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVT-GVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKP   88 (372)
T ss_dssp             CCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEE-EEEEETTTTEEEEEETTSCEEEEEEETTEEEE
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCccc-EEEEeCCCCEEEEEcCCCeEEEEECCCCeeee
Confidence            46688999988654 555899999998  554   333333334455 8999999986665444 4477777 555 222


Q ss_pred             EeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCe----EEEEeCC-ccCcceEE
Q 017371          151 FLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI----TTLVADG-FYFANGVA  225 (372)
Q Consensus       151 l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~----~~~~~~~-~~~~~gi~  225 (372)
                      .... .. ....+..+++.++|+..++-.                 .++.|..+|..+++    ...+... ......++
T Consensus        89 ~~~~-~~-~~~~v~~~~~~~~~~~l~~~~-----------------~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~  149 (372)
T 1k8k_C           89 TLVI-LR-INRAARCVRWAPNEKKFAVGS-----------------GSRVISICYFEQENDWWVCKHIKKPIRSTVLSLD  149 (372)
T ss_dssp             EEEC-CC-CSSCEEEEEECTTSSEEEEEE-----------------TTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEE
T ss_pred             eEEe-ec-CCCceeEEEECCCCCEEEEEe-----------------CCCEEEEEEecCCCcceeeeeeecccCCCeeEEE
Confidence            2111 11 113567889999997666522                 34556665554443    2222222 23456789


Q ss_pred             EecCCCEEEEEeCCCCeEEEEEccCCC---------------CcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHH
Q 017371          226 LSRDEDYVVVCESWKFRCRKYWLKGER---------------KGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRM  290 (372)
Q Consensus       226 ~~~dg~~l~v~~~~~~~i~~~~~~g~~---------------~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~  290 (372)
                      ++++++.++.+. .++.|..|++....               .+..........+....++++++|++.++...      
T Consensus       150 ~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------  222 (372)
T 1k8k_C          150 WHPNSVLLAAGS-CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH------  222 (372)
T ss_dssp             ECTTSSEEEEEE-TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEET------
T ss_pred             EcCCCCEEEEEc-CCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeC------
Confidence            999998666554 45678888854210               11111111122334667889999976666554      


Q ss_pred             HHhhcchhHHHHHHhcCccccccccCCCceEEEEECC-CCcEEEEEECCCCCeeccceeeEEE-CCEEEEEeCCCCeEEE
Q 017371          291 KILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGK  368 (372)
Q Consensus       291 ~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~-~g~L~igs~~~~~i~~  368 (372)
                                                  .+.|..+|. +++.+..+....+    .++++... ++++.+++ ....|.+
T Consensus       223 ----------------------------d~~i~i~d~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~-~d~~i~i  269 (372)
T 1k8k_C          223 ----------------------------DSTVCLADADKKMAVATLASETL----PLLAVTFITESSLVAAG-HDCFPVL  269 (372)
T ss_dssp             ----------------------------TTEEEEEEGGGTTEEEEEECSSC----CEEEEEEEETTEEEEEE-TTSSCEE
T ss_pred             ----------------------------CCEEEEEECCCCceeEEEccCCC----CeEEEEEecCCCEEEEE-eCCeEEE
Confidence                                        456777774 5788887775433    35666665 66666666 6667766


Q ss_pred             EeC
Q 017371          369 VQL  371 (372)
Q Consensus       369 ~~~  371 (372)
                      +++
T Consensus       270 ~~~  272 (372)
T 1k8k_C          270 FTY  272 (372)
T ss_dssp             EEE
T ss_pred             EEc
Confidence            654

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=98.89  E-value=6.3e-07  Score=85.12  Aligned_cols=204  Identities=16%  Similarity=0.115  Sum_probs=129.6

Q ss_pred             CCccEEEcCCCc-EEEEecC---CeEEEEe--CCceEEEEecCCCcccCeEEcCCCC-EEEEeCC---CcEEEEc-CCC-
Q 017371           80 HPEDASMDKNGV-IYTATRD---GWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA---NGLHKVS-EDG-  147 (372)
Q Consensus        80 ~p~~i~~d~~G~-l~v~~~~---g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~-l~v~~~~---~gv~~~~-~~g-  147 (372)
                      ...++++.++|. |+++..+   ..|+.++  +|+.+.+....+... .+++.|||+ |+++...   ..|+.++ .++ 
T Consensus       180 ~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~-~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~  258 (415)
T 2hqs_A          180 PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNG-APAFSPDGSKLAFALSKTGSLNLYVMDLASGQ  258 (415)
T ss_dssp             CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEE-EEEECTTSSEEEEEECTTSSCEEEEEETTTCC
T ss_pred             cceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCccc-CEEEcCCCCEEEEEEecCCCceEEEEECCCCC
Confidence            456788999995 5555544   4899999  666665554444556 899999997 5434332   2488888 556 


Q ss_pred             cEEEeeecCCcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEE
Q 017371          148 VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVAL  226 (372)
Q Consensus       148 ~~~l~~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~  226 (372)
                      ...+... .    .....+++.+||+ |+++..               ......|+.+|.++++.+.+.........++|
T Consensus       259 ~~~l~~~-~----~~~~~~~~spdg~~l~~~s~---------------~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~  318 (415)
T 2hqs_A          259 IRQVTDG-R----SNNTEPTWFPDSQNLAFTSD---------------QAGRPQVYKVNINGGAPQRITWEGSQNQDADV  318 (415)
T ss_dssp             EEECCCC-S----SCEEEEEECTTSSEEEEEEC---------------TTSSCEEEEEETTSSCCEECCCSSSEEEEEEE
T ss_pred             EEeCcCC-C----CcccceEECCCCCEEEEEEC---------------CCCCcEEEEEECCCCCEEEEecCCCcccCeEE
Confidence            4433211 1    2345788999997 555421               11334799999988876654433334457899


Q ss_pred             ecCCCEEEEEeCC--CCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHH
Q 017371          227 SRDEDYVVVCESW--KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLA  304 (372)
Q Consensus       227 ~~dg~~l~v~~~~--~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~  304 (372)
                      +|||++++++...  ...|+.+++++.+.   ..+...  .....+++.++|+..+.....                   
T Consensus       319 spdG~~l~~~~~~~g~~~i~~~d~~~~~~---~~l~~~--~~~~~~~~spdg~~l~~~s~~-------------------  374 (415)
T 2hqs_A          319 SSDGKFMVMVSSNGGQQHIAKQDLATGGV---QVLSST--FLDETPSLAPNGTMVIYSSSQ-------------------  374 (415)
T ss_dssp             CTTSSEEEEEEECSSCEEEEEEETTTCCE---EECCCS--SSCEEEEECTTSSEEEEEEEE-------------------
T ss_pred             CCCCCEEEEEECcCCceEEEEEECCCCCE---EEecCC--CCcCCeEEcCCCCEEEEEEcC-------------------
Confidence            9999988887653  35788898875432   222222  246678999999744433320                   


Q ss_pred             hcCccccccccCCCceEEEEECCCCcEEEEEECCCC
Q 017371          305 AYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTG  340 (372)
Q Consensus       305 ~~p~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g  340 (372)
                                  .....|+.++.+|+....+....+
T Consensus       375 ------------~~~~~l~~~d~~g~~~~~l~~~~~  398 (415)
T 2hqs_A          375 ------------GMGSVLNLVSTDGRFKARLPATDG  398 (415)
T ss_dssp             ------------TTEEEEEEEETTSCCEEECCCSSS
T ss_pred             ------------CCccEEEEEECCCCcEEEeeCCCC
Confidence                        012368888888887776655544

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.88  E-value=1.1e-06  Score=81.92  Aligned_cols=216  Identities=12%  Similarity=0.132  Sum_probs=128.0

Q ss_pred             CCCcEEEEecCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCCEEEEeCCCcEEEEc-CCCcEEEeeecCCcc--ccc
Q 017371           88 KNGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDGVENFLSYVNGSK--LRF  162 (372)
Q Consensus        88 ~~G~l~v~~~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~-~~g~~~l~~~~~~~~--~~~  162 (372)
                      .+|.+|+++.+|.|+.+|  +|+...-....+.......+. +|.+|++....+++.+| .+|............  ...
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~-~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~  180 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS-DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRG  180 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE-TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE-CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecC
Confidence            478999999999999999  576543223222333133343 78999987666799999 678222222211111  011


Q ss_pred             ccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCcc------------CcceEEEecCC
Q 017371          163 ANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFY------------FANGVALSRDE  230 (372)
Q Consensus       163 ~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~------------~~~gi~~~~dg  230 (372)
                      ....+++ +|.+|++.                  ..+.|+.+|+++|+..+......            ......+.  +
T Consensus       181 ~~~~~~~-~~~v~~g~------------------~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~--~  239 (376)
T 3q7m_A          181 ESAPTTA-FGAAVVGG------------------DNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVV--N  239 (376)
T ss_dssp             CCCCEEE-TTEEEECC------------------TTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEE--T
T ss_pred             CCCcEEE-CCEEEEEc------------------CCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEE--C
Confidence            1223333 67888842                  45789999998888766432110            00111222  3


Q ss_pred             CEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCccc
Q 017371          231 DYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLF  310 (372)
Q Consensus       231 ~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~  310 (372)
                      +.+|+... +..++.++..+.+.    .+..... ....+.++ ++++|+++..                          
T Consensus       240 ~~v~~~~~-~g~l~~~d~~tG~~----~w~~~~~-~~~~~~~~-~~~l~~~~~~--------------------------  286 (376)
T 3q7m_A          240 GVVFALAY-NGNLTALDLRSGQI----MWKRELG-SVNDFIVD-GNRIYLVDQN--------------------------  286 (376)
T ss_dssp             TEEEEECT-TSCEEEEETTTCCE----EEEECCC-CEEEEEEE-TTEEEEEETT--------------------------
T ss_pred             CEEEEEec-CcEEEEEECCCCcE----EeeccCC-CCCCceEE-CCEEEEEcCC--------------------------
Confidence            45887753 56799999854321    1111121 13345554 6789999864                          


Q ss_pred             cccccCCCceEEEEECC-CCcEEEEEECCCCCeeccceeeEEECCEEEEEeCCCCeEEEEeC
Q 017371          311 SQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL  371 (372)
Q Consensus       311 ~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~igs~~~~~i~~~~~  371 (372)
                               +.++++|. +|+.+.......+.   ..+.....+++||+++.. ..|..++.
T Consensus       287 ---------g~l~~~d~~tG~~~w~~~~~~~~---~~~~~~~~~~~l~v~~~~-g~l~~~d~  335 (376)
T 3q7m_A          287 ---------DRVMALTIDGGVTLWTQSDLLHR---LLTSPVLYNGNLVVGDSE-GYLHWINV  335 (376)
T ss_dssp             ---------CCEEEEETTTCCEEEEECTTTTS---CCCCCEEETTEEEEECTT-SEEEEEET
T ss_pred             ---------CeEEEEECCCCcEEEeecccCCC---cccCCEEECCEEEEEeCC-CeEEEEEC
Confidence                     57899995 68888776533222   234455678999999864 46766664

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=98.87  E-value=6.7e-06  Score=74.32  Aligned_cols=181  Identities=12%  Similarity=0.096  Sum_probs=113.3

Q ss_pred             CCCccEEEcCCCcEEEEecCCeEEEEe--CCc----eEEEE--ecCCCcccCeEEcCCCCEEEE-eCCCcEEEEc-CCC-
Q 017371           79 NHPEDASMDKNGVIYTATRDGWIKRLQ--DGT----WVNWK--FIDSQTLVGLTSTKEGHLIIC-DNANGLHKVS-EDG-  147 (372)
Q Consensus        79 ~~p~~i~~d~~G~l~v~~~~g~i~~~~--~g~----~~~~~--~~~~~p~~gl~~d~dG~l~v~-~~~~gv~~~~-~~g-  147 (372)
                      ....++++.++|.+.++..+|.|..|+  .++    ...+.  ....... .+++.++|+++++ .....+..++ .++ 
T Consensus        52 ~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~~~d~~~~~  130 (337)
T 1gxr_A           52 EVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIR-SCKLLPDGCTLIVGGEASTLSIWDLAAPT  130 (337)
T ss_dssp             SCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEE-EEEECTTSSEEEEEESSSEEEEEECCCC-
T ss_pred             CceEEEEEecCCcEEEEcCCCeEEEEECCCCCceeeeecccccCCCCcEE-EEEEcCCCCEEEEEcCCCcEEEEECCCCC
Confidence            457789999999766555599999998  332    22222  2223345 8999999985555 4334477777 444 


Q ss_pred             cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCC-ccCcceEEE
Q 017371          148 VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVAL  226 (372)
Q Consensus       148 ~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~-~~~~~gi~~  226 (372)
                      ....... .+. ...+..+++.++|+..++-.                 .++.|..+|..+++....... ......+++
T Consensus       131 ~~~~~~~-~~~-~~~i~~~~~~~~~~~l~~~~-----------------~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~  191 (337)
T 1gxr_A          131 PRIKAEL-TSS-APACYALAISPDSKVCFSCC-----------------SDGNIAVWDLHNQTLVRQFQGHTDGASCIDI  191 (337)
T ss_dssp             -EEEEEE-ECS-SSCEEEEEECTTSSEEEEEE-----------------TTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred             cceeeec-ccC-CCceEEEEECCCCCEEEEEe-----------------CCCcEEEEeCCCCceeeeeecccCceEEEEE
Confidence            2222111 111 12456889999997666522                 467899999887776554443 334567899


Q ss_pred             ecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 017371          227 SRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       227 ~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~  284 (372)
                      +++++.++.+. .++.|..+++...+.  ...+  ...+....+++.++|++.+....
T Consensus       192 ~~~~~~l~~~~-~dg~i~~~d~~~~~~--~~~~--~~~~~v~~~~~s~~~~~l~~~~~  244 (337)
T 1gxr_A          192 SNDGTKLWTGG-LDNTVRSWDLREGRQ--LQQH--DFTSQIFSLGYCPTGEWLAVGME  244 (337)
T ss_dssp             CTTSSEEEEEE-TTSEEEEEETTTTEE--EEEE--ECSSCEEEEEECTTSSEEEEEET
T ss_pred             CCCCCEEEEEe-cCCcEEEEECCCCce--Eeee--cCCCceEEEEECCCCCEEEEEcC
Confidence            99998776665 466888898865321  1122  12334677889999986666544

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=98.87  E-value=2.7e-06  Score=80.69  Aligned_cols=160  Identities=17%  Similarity=0.166  Sum_probs=101.5

Q ss_pred             CeEEEEe-CC-ceEEEEecCCCcccCeEEcCCCC-EEEEeCCC---cEEEEc-CCC-cEEEeeecCCcccccccceEEcc
Q 017371           99 GWIKRLQ-DG-TWVNWKFIDSQTLVGLTSTKEGH-LIICDNAN---GLHKVS-EDG-VENFLSYVNGSKLRFANDVVEAS  170 (372)
Q Consensus        99 g~i~~~~-~g-~~~~~~~~~~~p~~gl~~d~dG~-l~v~~~~~---gv~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~d~  170 (372)
                      +.|+.++ ++ ..+.+....+... .+++.|||+ |+.+....   .|+.++ .+| ...+... .    ..+..+++.|
T Consensus       159 ~~i~i~d~~g~~~~~l~~~~~~v~-~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~-~----~~~~~~~~sp  232 (415)
T 2hqs_A          159 YELRVSDYDGYNQFVVHRSPQPLM-SPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF-P----RHNGAPAFSP  232 (415)
T ss_dssp             EEEEEEETTSCSCEEEEEESSCEE-EEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECC-S----SCEEEEEECT
T ss_pred             ceEEEEcCCCCCCEEEeCCCCcce-eeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecC-C----CcccCEEEcC
Confidence            6888888 44 4555544445566 899999997 44443332   588888 666 4443221 1    2456889999


Q ss_pred             CCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCC--CCeEEEEE
Q 017371          171 DGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW--KFRCRKYW  247 (372)
Q Consensus       171 dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~--~~~i~~~~  247 (372)
                      ||+ |+++...               .....|+.+|..+++...+.........++|+|||+.++++...  ..+|+.++
T Consensus       233 dg~~la~~~~~---------------~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d  297 (415)
T 2hqs_A          233 DGSKLAFALSK---------------TGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVN  297 (415)
T ss_dssp             TSSEEEEEECT---------------TSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             CCCEEEEEEec---------------CCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEE
Confidence            997 5555321               13457999999888876654443445678999999988877643  23798888


Q ss_pred             ccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEe
Q 017371          248 LKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII  283 (372)
Q Consensus       248 ~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~  283 (372)
                      +++.+.   ..+. ........++++++|+..+...
T Consensus       298 ~~~~~~---~~l~-~~~~~~~~~~~spdG~~l~~~~  329 (415)
T 2hqs_A          298 INGGAP---QRIT-WEGSQNQDADVSSDGKFMVMVS  329 (415)
T ss_dssp             TTSSCC---EECC-CSSSEEEEEEECTTSSEEEEEE
T ss_pred             CCCCCE---EEEe-cCCCcccCeEECCCCCEEEEEE
Confidence            876432   2221 1222345688899997544443

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.87  E-value=7.7e-07  Score=82.88  Aligned_cols=242  Identities=11%  Similarity=0.065  Sum_probs=131.6

Q ss_pred             EecCCCCCCCccEEEcCCC-cEEEEec----------CCeEEEEe--CCce-EEEEec------CCCcccCeEEcCCCC-
Q 017371           72 KVGEGSVNHPEDASMDKNG-VIYTATR----------DGWIKRLQ--DGTW-VNWKFI------DSQTLVGLTSTKEGH-  130 (372)
Q Consensus        72 ~~~~g~~~~p~~i~~d~~G-~l~v~~~----------~g~i~~~~--~g~~-~~~~~~------~~~p~~gl~~d~dG~-  130 (372)
                      .+..|  ..| +++++++| .+|+++.          ++.|..||  .++. ..+...      ...|. ++++++||+ 
T Consensus        46 ~i~~g--~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~-~i~~spdg~~  121 (361)
T 2oiz_A           46 MVPTA--FNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDG-LFRQTTDGKF  121 (361)
T ss_dssp             EEECC--EEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGG-GEEECTTSSE
T ss_pred             EecCC--CCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcc-eEEECCCCCE
Confidence            44445  368 99999998 6899872          45699999  4443 333322      35688 999999995 


Q ss_pred             EEEEeCC--CcEEEEc-CCCcEEEeeecCCcccccccceEEccCC-cEEEEeCCCCCCCcccccccccccCCCeEEEEeC
Q 017371          131 LIICDNA--NGLHKVS-EDGVENFLSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDP  206 (372)
Q Consensus       131 l~v~~~~--~gv~~~~-~~g~~~l~~~~~~~~~~~~~~l~~d~dG-~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~  206 (372)
                      ||+++..  ..|..+| .++ +.+....+..   ...++.+.++| ..|++..                 ++|++..++.
T Consensus       122 l~v~n~~~~~~v~v~d~~~~-~~~~~~i~~~---~~~~v~~~p~~~~~~~~~~-----------------~dg~~~~v~~  180 (361)
T 2oiz_A          122 IVLQNASPATSIGIVDVAKG-DYVEDVTAAA---GCWSVIPQPNRPRSFMTIC-----------------GDGGLLTINL  180 (361)
T ss_dssp             EEEEEESSSEEEEEEETTTT-EEEEEEGGGT---TEEEEEECTTSSSEEEEEE-----------------TTSSEEEEEE
T ss_pred             EEEECCCCCCeEEEEECCCC-cEEEEEecCC---CcceeEEcCCCCeeEEEEC-----------------CCCcEEEEEE
Confidence            8888643  4588888 555 1111101111   01113333433 3344321                 2344444433


Q ss_pred             CC-CeEEE------EeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeecc------C---CCCCCcee
Q 017371          207 SS-NITTL------VADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAE------N---LPGAPDNI  270 (372)
Q Consensus       207 ~t-~~~~~------~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~------~---~~g~p~~i  270 (372)
                      +. ++...      +.+.-..|..+..+++++.+++... .+.|+.+++.+........+..      .   .+..+..+
T Consensus       181 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~  259 (361)
T 2oiz_A          181 GEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSY-YGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLV  259 (361)
T ss_dssp             CTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBT-TSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCE
T ss_pred             CCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeC-CCeEEEEEecCCCceecccccccCccccccccccCCeeEE
Confidence            21 33221      1111123444555677777776654 4578888876433221111110      0   11223348


Q ss_pred             EEcCCC-CEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEECC-CCcEEEEEECCCCCeecccee
Q 017371          271 NLAPDG-TFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTS  348 (372)
Q Consensus       271 ~~d~~G-~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~  348 (372)
                      +++++| .+|++....+...                        ....+.+.|..+|. +++.+..+....      +.+
T Consensus       260 a~~~dg~~lyv~~~~~~~~~------------------------~~~~~~~~v~viD~~t~~~v~~i~~~~------p~~  309 (361)
T 2oiz_A          260 GLHRASGRMYVFMHPDGKEG------------------------THKFPAAEIWVMDTKTKQRVARIPGRD------ALS  309 (361)
T ss_dssp             EEETTTTEEEEEEESSCCTT------------------------CTTCCCSEEEEEETTTTEEEEEEECTT------CCE
T ss_pred             EEecCCCeEEEEEccCCCcc------------------------cccCCCceEEEEECCCCcEEEEEecCC------eeE
Confidence            999985 7898875100000                        00011347888885 578887776532      455


Q ss_pred             eEEE--CCEEEEEeCCCCeEEEEeC
Q 017371          349 GLQV--DNHLYVISLTSNFIGKVQL  371 (372)
Q Consensus       349 ~~~~--~g~L~igs~~~~~i~~~~~  371 (372)
                      +...  +.+||.++.  +.|.++|.
T Consensus       310 ia~spdg~~l~v~n~--~~v~v~D~  332 (361)
T 2oiz_A          310 MTIDQQRNLMLTLDG--GNVNVYDI  332 (361)
T ss_dssp             EEEETTTTEEEEECS--SCEEEEEC
T ss_pred             EEECCCCCEEEEeCC--CeEEEEEC
Confidence            6664  468998874  89999985

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.86  E-value=1.5e-06  Score=81.00  Aligned_cols=216  Identities=15%  Similarity=0.169  Sum_probs=127.2

Q ss_pred             CCcEEEEecCCeEEEEe--CCceEEEEecCCCc-----ccCeEEcCCCCEEEEeCCCcEEEEc-CCCcEEEeeecCCcc-
Q 017371           89 NGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQT-----LVGLTSTKEGHLIICDNANGLHKVS-EDGVENFLSYVNGSK-  159 (372)
Q Consensus        89 ~G~l~v~~~~g~i~~~~--~g~~~~~~~~~~~p-----~~gl~~d~dG~l~v~~~~~gv~~~~-~~g~~~l~~~~~~~~-  159 (372)
                      +|.+|+++.+|.|+.++  +|+...........     .....++ +|.+|++....+++.++ .+|...+........ 
T Consensus       143 ~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~  221 (376)
T 3q7m_A          143 DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA-FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATG  221 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE-TTEEEECCTTTEEEEEETTTCCEEEEEECCC---
T ss_pred             CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE-CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCC
Confidence            67999999999999999  67644322221111     1134444 68899986656799999 677222222111100 


Q ss_pred             ------cccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEE
Q 017371          160 ------LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYV  233 (372)
Q Consensus       160 ------~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l  233 (372)
                            +.......+..+|.+|++.                  ..+.|+.+|+++|+..+... .....++.+  +++.+
T Consensus       222 ~~~~~~~~~~~~~p~~~~~~v~~~~------------------~~g~l~~~d~~tG~~~w~~~-~~~~~~~~~--~~~~l  280 (376)
T 3q7m_A          222 STEIDRLSDVDTTPVVVNGVVFALA------------------YNGNLTALDLRSGQIMWKRE-LGSVNDFIV--DGNRI  280 (376)
T ss_dssp             --------CCCCCCEEETTEEEEEC------------------TTSCEEEEETTTCCEEEEEC-CCCEEEEEE--ETTEE
T ss_pred             CcccccccccCCCcEEECCEEEEEe------------------cCcEEEEEECCCCcEEeecc-CCCCCCceE--ECCEE
Confidence                  0001111122468899863                  35789999999898766443 222334444  35568


Q ss_pred             EEEeCCCCeEEEEEccCCCCcceeeeccCCC-CCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccc
Q 017371          234 VVCESWKFRCRKYWLKGERKGKLETFAENLP-GAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQ  312 (372)
Q Consensus       234 ~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~-g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~  312 (372)
                      |+... ++.|+.++..+.+..   ....... .......+ .+|.+|+++..                            
T Consensus       281 ~~~~~-~g~l~~~d~~tG~~~---w~~~~~~~~~~~~~~~-~~~~l~v~~~~----------------------------  327 (376)
T 3q7m_A          281 YLVDQ-NDRVMALTIDGGVTL---WTQSDLLHRLLTSPVL-YNGNLVVGDSE----------------------------  327 (376)
T ss_dssp             EEEET-TCCEEEEETTTCCEE---EEECTTTTSCCCCCEE-ETTEEEEECTT----------------------------
T ss_pred             EEEcC-CCeEEEEECCCCcEE---EeecccCCCcccCCEE-ECCEEEEEeCC----------------------------
Confidence            88875 457999998654211   1111111 11223334 35789998764                            


Q ss_pred             cccCCCceEEEEEC-CCCcEEEEEECCCCCeeccceeeEEECCEEEEEeCCCCeEEEEe
Q 017371          313 FITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQ  370 (372)
Q Consensus       313 ~~~~~~~~~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~igs~~~~~i~~~~  370 (372)
                             +.++.+| .+|+++..+....+.   ..+.....+++||+++..+ .|..++
T Consensus       328 -------g~l~~~d~~tG~~~~~~~~~~~~---~~~~~~~~~~~l~v~~~~G-~l~~~~  375 (376)
T 3q7m_A          328 -------GYLHWINVEDGRFVAQQKVDSSG---FQTEPVAADGKLLIQAKDG-TVYSIT  375 (376)
T ss_dssp             -------SEEEEEETTTCCEEEEEECCTTC---BCSCCEEETTEEEEEBTTS-CEEEEE
T ss_pred             -------CeEEEEECCCCcEEEEEecCCCc---ceeCCEEECCEEEEEeCCC-EEEEEe
Confidence                   5799999 569998887764332   2344556789999999764 455544

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=98.82  E-value=1.2e-06  Score=82.09  Aligned_cols=235  Identities=8%  Similarity=0.030  Sum_probs=142.9

Q ss_pred             CCccEEEcCCC-cEEEEecCCeEEEEe-CC------ceEEEEecCCCcccCeEEcCC-CCEEEEeCC-CcEEEEc-CCCc
Q 017371           80 HPEDASMDKNG-VIYTATRDGWIKRLQ-DG------TWVNWKFIDSQTLVGLTSTKE-GHLIICDNA-NGLHKVS-EDGV  148 (372)
Q Consensus        80 ~p~~i~~d~~G-~l~v~~~~g~i~~~~-~g------~~~~~~~~~~~p~~gl~~d~d-G~l~v~~~~-~gv~~~~-~~g~  148 (372)
                      ...++++.++| .|.++..+|.|..|+ ..      ....+....+... .+++.++ ++++++... ..|..++ .++.
T Consensus        69 ~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~  147 (416)
T 2pm9_A           69 KFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVK-TVKFNAKQDNVLASGGNNGEIFIWDMNKCT  147 (416)
T ss_dssp             CEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCC-EEEECSSSTTBEEEECSSSCEEBCBTTTTS
T ss_pred             ceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceE-EEEEcCCCCCEEEEEcCCCeEEEEECCCCc
Confidence            45678898888 466666899999998 32      1222222233445 8999998 666665444 4466677 3332


Q ss_pred             ------EEEeeecCCcccccccceEEccC-CcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCC----
Q 017371          149 ------ENFLSYVNGSKLRFANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG----  217 (372)
Q Consensus       149 ------~~l~~~~~~~~~~~~~~l~~d~d-G~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~----  217 (372)
                            ..+...........+..+++.++ ++++++-.                 .++.|..+|..+++.......    
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-----------------~dg~v~iwd~~~~~~~~~~~~~~~~  210 (416)
T 2pm9_A          148 ESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAG-----------------SSNFASIWDLKAKKEVIHLSYTSPN  210 (416)
T ss_dssp             SCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEES-----------------SSSCEEEEETTTTEEEEEECCCCCS
T ss_pred             cccccccccccccccCCCCCeeEEEeCCCCCcEEEEEc-----------------CCCCEEEEECCCCCcceEEeccccc
Confidence                  22111000111235678999998 67776532                 467899999887776554433    


Q ss_pred             ---ccCcceEEEecCCCEEEEEeCCCC---eEEEEEccCCCCcceeeeccCCCCCCceeEEcC-CCCEEEEEecCchhHH
Q 017371          218 ---FYFANGVALSRDEDYVVVCESWKF---RCRKYWLKGERKGKLETFAENLPGAPDNINLAP-DGTFWIAIIKLDARRM  290 (372)
Q Consensus       218 ---~~~~~gi~~~~dg~~l~v~~~~~~---~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~-~G~lwva~~~~~~~~~  290 (372)
                         ......++++|++..++++...++   .|..|++...... ...+.....+....+++.+ +|++.++...      
T Consensus       211 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~------  283 (416)
T 2pm9_A          211 SGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTP-LQTLNQGHQKGILSLDWCHQDEHLLLSSGR------  283 (416)
T ss_dssp             SCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSC-SBCCCSCCSSCEEEEEECSSCSSCEEEEES------
T ss_pred             cccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCC-cEEeecCccCceeEEEeCCCCCCeEEEEeC------
Confidence               234567899999854555555555   7888888653111 1111101223456788888 7876666655      


Q ss_pred             HHhhcchhHHHHHHhcCccccccccCCCceEEEEEC-CCCcEEEEEECCCCCeeccceeeEEE-CC-EEEEEeCCCCeEE
Q 017371          291 KILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQV-DN-HLYVISLTSNFIG  367 (372)
Q Consensus       291 ~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~-~g-~L~igs~~~~~i~  367 (372)
                                                  .+.|..+| .+++.+..+....+    .++++... ++ .+++.......|.
T Consensus       284 ----------------------------dg~v~~wd~~~~~~~~~~~~~~~----~v~~~~~s~~~~~~l~s~~~d~~i~  331 (416)
T 2pm9_A          284 ----------------------------DNTVLLWNPESAEQLSQFPARGN----WCFKTKFAPEAPDLFACASFDNKIE  331 (416)
T ss_dssp             ----------------------------SSEEEEECSSSCCEEEEEECSSS----CCCCEEECTTCTTEEEECCSSSEEE
T ss_pred             ----------------------------CCCEEEeeCCCCccceeecCCCC----ceEEEEECCCCCCEEEEEecCCcEE
Confidence                                        46777788 45788877765443    36666765 34 5666555667788


Q ss_pred             EEeC
Q 017371          368 KVQL  371 (372)
Q Consensus       368 ~~~~  371 (372)
                      ++++
T Consensus       332 iw~~  335 (416)
T 2pm9_A          332 VQTL  335 (416)
T ss_dssp             EEES
T ss_pred             EEEc
Confidence            7775

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=98.81  E-value=4.7e-06  Score=76.30  Aligned_cols=246  Identities=13%  Similarity=0.028  Sum_probs=139.6

Q ss_pred             CCCccEEEcCCCc-EEEEecCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCCEEEEeCCC------cEEEEc-CCC-
Q 017371           79 NHPEDASMDKNGV-IYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNAN------GLHKVS-EDG-  147 (372)
Q Consensus        79 ~~p~~i~~d~~G~-l~v~~~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~------gv~~~~-~~g-  147 (372)
                      ....++++.++|. |+++..+|.|..|+  +++............ .+++.++|+.+++....      .+..++ ..+ 
T Consensus        75 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~  153 (369)
T 3zwl_B           75 GTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVK-RVEFSPCGNYFLAILDNVMKNPGSINIYEIERDS  153 (369)
T ss_dssp             SCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEE-EEEECTTSSEEEEEECCBTTBCCEEEEEEEEECT
T ss_pred             CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeE-EEEEccCCCEEEEecCCccCCCCEEEEEEecCCc
Confidence            3456789998885 55566899999999  555433333444556 99999999866664433      455666 222 


Q ss_pred             -cEEEeeecC--------CcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCC-CeEEEEeC-
Q 017371          148 -VENFLSYVN--------GSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS-NITTLVAD-  216 (372)
Q Consensus       148 -~~~l~~~~~--------~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t-~~~~~~~~-  216 (372)
                       ...+.....        ......+..+++.++|+..++-                 ..++.|..+|..+ ++...... 
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------------~~dg~i~i~d~~~~~~~~~~~~~  216 (369)
T 3zwl_B          154 ATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAG-----------------HKDGKISKYDVSNNYEYVDSIDL  216 (369)
T ss_dssp             TTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEE-----------------ETTSEEEEEETTTTTEEEEEEEC
T ss_pred             cceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEE-----------------cCCCEEEEEECCCCcEeEEEEec
Confidence             211111100        0001156678888998766642                 2567899999876 44433333 


Q ss_pred             CccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcc
Q 017371          217 GFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSS  296 (372)
Q Consensus       217 ~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~  296 (372)
                      .......++++++++.++.+. .++.|..+++...+.  ...+.  .......++++++|.+.+..............  
T Consensus       217 ~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~--~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--  289 (369)
T 3zwl_B          217 HEKSISDMQFSPDLTYFITSS-RDTNSFLVDVSTLQV--LKKYE--TDCPLNTAVITPLKEFIILGGGQEAKDVTTTS--  289 (369)
T ss_dssp             CSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTCCE--EEEEE--CSSCEEEEEECSSSSEEEEEECCC----------
T ss_pred             CCCceeEEEECCCCCEEEEec-CCceEEEEECCCCce--eeeec--CCCCceeEEecCCCceEEEeecCCCceEEEEe--
Confidence            233456789999999776664 466788888865321  12222  22335678899999766655442110000000  


Q ss_pred             hhHHHHHHhcCccccccccCCCceEEEEEC-CCCcEEEEEECCCCCeeccceeeEEE-CCEEEEEeCCCCeEEEEeC
Q 017371          297 KLIKHVLAAYPKLFSQFITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL  371 (372)
Q Consensus       297 ~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~L~igs~~~~~i~~~~~  371 (372)
                                        .......+..++ ..++.+..+....+    .++++... ++++.+.......|.++++
T Consensus       290 ------------------~~~~~~~i~~~d~~~~~~~~~~~~~~~----~v~~~~~s~~~~~l~s~~~dg~v~iw~~  344 (369)
T 3zwl_B          290 ------------------ANEGKFEARFYHKIFEEEIGRVQGHFG----PLNTVAISPQGTSYASGGEDGFIRLHHF  344 (369)
T ss_dssp             -----------------------CEEEEEETTTCCEEEEEECCSS----CEEEEEECTTSSEEEEEETTSEEEEEEE
T ss_pred             ------------------cCCCcceeEEEecCCCcchhheecccC----cEEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence                              001111455555 35677777665433    46777775 4544444445567777764

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=98.81  E-value=3.7e-06  Score=77.68  Aligned_cols=227  Identities=11%  Similarity=0.070  Sum_probs=136.9

Q ss_pred             CccEEEcCCCcEEEEecCCeEEEEe--CCce-EEEE---ec-CCCcccCeEEcCCCCEEEEeCC-CcEEEEc-CCC--cE
Q 017371           81 PEDASMDKNGVIYTATRDGWIKRLQ--DGTW-VNWK---FI-DSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG--VE  149 (372)
Q Consensus        81 p~~i~~d~~G~l~v~~~~g~i~~~~--~g~~-~~~~---~~-~~~p~~gl~~d~dG~l~v~~~~-~gv~~~~-~~g--~~  149 (372)
                      ..++++.+++.|.++..+|.|..|+  +++. ....   .. .+... .+++.++|+++++... .-|..+| .++  +.
T Consensus        85 v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~-~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~  163 (344)
T 4gqb_B           85 VADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVS-TVSVLSSGTQAVSGSKDICIKVWDLAQQVVLS  163 (344)
T ss_dssp             EEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEE-EEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred             EEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEE-EEEECCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence            4568888999999999999999998  4432 2211   11 23345 8999999987766544 4477778 666  33


Q ss_pred             EEeeecCCcccccccceEEccCC-cEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeC---CccCcceEE
Q 017371          150 NFLSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD---GFYFANGVA  225 (372)
Q Consensus       150 ~l~~~~~~~~~~~~~~l~~d~dG-~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~---~~~~~~gi~  225 (372)
                      .+.    +. ...+..+++.+++ +++++-+                 .++.|..+|..+++......   .......++
T Consensus       164 ~~~----~h-~~~V~~~~~~~~~~~~l~s~s-----------------~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  221 (344)
T 4gqb_B          164 SYR----AH-AAQVTCVAASPHKDSVFLSCS-----------------EDNRILLWDTRCPKPASQIGCSAPGYLPTSLA  221 (344)
T ss_dssp             EEC----CC-SSCEEEEEECSSCTTEEEEEE-----------------TTSCEEEEETTSSSCEEECC----CCCEEEEE
T ss_pred             EEc----Cc-CCceEEEEecCCCCCceeeec-----------------cccccccccccccceeeeeecceeeccceeee
Confidence            331    11 1346678898887 5666532                 46778889987766443322   122346788


Q ss_pred             EecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCC-EEEEEecCchhHHHHhhcchhHHHHHH
Q 017371          226 LSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLA  304 (372)
Q Consensus       226 ~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~r~~~~  304 (372)
                      +++++..++++...++.|..+++...+.  ...+. ...+....+++.++|. +.++...                    
T Consensus       222 ~~p~~~~~l~sg~~dg~v~~wd~~~~~~--~~~~~-~h~~~v~~v~fsp~g~~~lasgs~--------------------  278 (344)
T 4gqb_B          222 WHPQQSEVFVFGDENGTVSLVDTKSTSC--VLSSA-VHSQCVTGLVFSPHSVPFLASLSE--------------------  278 (344)
T ss_dssp             ECSSCTTEEEEEETTSEEEEEESCC--C--CEEEE-CCSSCEEEEEECSSSSCCEEEEET--------------------
T ss_pred             ecCCCCcceEEeccCCcEEEEECCCCcE--EEEEc-CCCCCEEEEEEccCCCeEEEEEeC--------------------
Confidence            9987666777766677888888764322  12222 2223356788999985 4443333                    


Q ss_pred             hcCccccccccCCCceEEEEECCCCcEEEEEECCCCCeeccceeeEEE--CCEEEEEeCCCCeEEEEeC
Q 017371          305 AYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV--DNHLYVISLTSNFIGKVQL  371 (372)
Q Consensus       305 ~~p~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~--~g~L~igs~~~~~i~~~~~  371 (372)
                                    .+.|..+|.+...+..+...    ...++++.+.  +.+|....-....|.+.++
T Consensus       279 --------------D~~i~vwd~~~~~~~~~~~H----~~~V~~v~~sp~~~~llas~s~D~~v~~w~v  329 (344)
T 4gqb_B          279 --------------DCSLAVLDSSLSELFRSQAH----RDFVRDATWSPLNHSLLTTVGWDHQVVHHVV  329 (344)
T ss_dssp             --------------TSCEEEECTTCCEEEEECCC----SSCEEEEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred             --------------CCeEEEEECCCCcEEEEcCC----CCCEEEEEEeCCCCeEEEEEcCCCeEEEEEC
Confidence                          34566677554433333322    2357777775  3455544334556666654

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=98.81  E-value=2.7e-06  Score=78.58  Aligned_cols=183  Identities=11%  Similarity=0.021  Sum_probs=108.4

Q ss_pred             CccEEEcCCCcEEEEecCC-------eEEEEe---CC----ceEEEEecCCCcccCeEEcCCCCEEEEeCCCcEEEEc-C
Q 017371           81 PEDASMDKNGVIYTATRDG-------WIKRLQ---DG----TWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-E  145 (372)
Q Consensus        81 p~~i~~d~~G~l~v~~~~g-------~i~~~~---~g----~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~-~  145 (372)
                      -+++++.+||.+.++..++       .+..++   .+    ............. .+++.+++.|..+.....|..+| .
T Consensus        33 v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~d~~l~~~s~dg~v~lWd~~  111 (344)
T 4gqb_B           33 LEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVA-DLTWVGERGILVASDSGAVELWELD  111 (344)
T ss_dssp             EEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEE-EEEEETTTEEEEEETTSEEEEEEEC
T ss_pred             EEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEE-EEEEeCCCeEEEEECCCEEEEEecc
Confidence            4578899999887776433       333333   01    0111111112345 88999998888776655566777 5


Q ss_pred             CC--cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCcc-Ccc
Q 017371          146 DG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFY-FAN  222 (372)
Q Consensus       146 ~g--~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~-~~~  222 (372)
                      ++  ...+.....+- ...+..+++.++|+..++-+                 .++.|..+|..+++......+.. ..+
T Consensus       112 ~~~~~~~~~~~~~~H-~~~V~~v~~spdg~~l~sgs-----------------~d~~i~iwd~~~~~~~~~~~~h~~~V~  173 (344)
T 4gqb_B          112 ENETLIVSKFCKYEH-DDIVSTVSVLSSGTQAVSGS-----------------KDICIKVWDLAQQVVLSSYRAHAAQVT  173 (344)
T ss_dssp             TTSSCEEEEEEEECC-SSCEEEEEECTTSSEEEEEE-----------------TTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred             CCCceeEeeccccCC-CCCEEEEEECCCCCEEEEEe-----------------CCCeEEEEECCCCcEEEEEcCcCCceE
Confidence            55  33332221111 13567899999998777632                 56789999998887766555433 345


Q ss_pred             eEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCC-CCCCceeEEcCCC-CEEEEEec
Q 017371          223 GVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENL-PGAPDNINLAPDG-TFWIAIIK  284 (372)
Q Consensus       223 gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~-~g~p~~i~~d~~G-~lwva~~~  284 (372)
                      .+++++++..++++.+.++.|..+++...+..  ..+.... ...+..+++.+++ ++.++...
T Consensus       174 ~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~  235 (344)
T 4gqb_B          174 CVAASPHKDSVFLSCSEDNRILLWDTRCPKPA--SQIGCSAPGYLPTSLAWHPQQSEVFVFGDE  235 (344)
T ss_dssp             EEEECSSCTTEEEEEETTSCEEEEETTSSSCE--EECC----CCCEEEEEECSSCTTEEEEEET
T ss_pred             EEEecCCCCCceeeecccccccccccccccee--eeeecceeeccceeeeecCCCCcceEEecc
Confidence            78899998767777767778888888654221  1121111 1234567777754 56655443

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=98.80  E-value=1.7e-05  Score=72.56  Aligned_cols=185  Identities=12%  Similarity=0.155  Sum_probs=111.0

Q ss_pred             CCCCccEEEcCCCc-EEEEecCCeEEEEe--CCce-EEEEecCCCcccCeEEcCCCCEEEEeCC-CcEEEEc-CCC--cE
Q 017371           78 VNHPEDASMDKNGV-IYTATRDGWIKRLQ--DGTW-VNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG--VE  149 (372)
Q Consensus        78 ~~~p~~i~~d~~G~-l~v~~~~g~i~~~~--~g~~-~~~~~~~~~p~~gl~~d~dG~l~v~~~~-~gv~~~~-~~g--~~  149 (372)
                      -....++++.++|. |++++.+|.|..|+  +++. ..+....+... .+++.++|+++++... ..+..++ .++  ..
T Consensus        32 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  110 (369)
T 3zwl_B           32 ERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIW-SIDVDCFTKYCVTGSADYSIKLWDVSNGQCVA  110 (369)
T ss_dssp             SSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEE-EEEECTTSSEEEEEETTTEEEEEETTTCCEEE
T ss_pred             eceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEE-EEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence            34677899999885 55666899999998  5543 33333334455 8999999986666444 4477777 555  33


Q ss_pred             EEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCe------------EEEEeC-
Q 017371          150 NFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI------------TTLVAD-  216 (372)
Q Consensus       150 ~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~------------~~~~~~-  216 (372)
                      .+.  ..    ..+..+++.++|+.+++-...            .....+.|..+|..++.            ...+.. 
T Consensus       111 ~~~--~~----~~v~~~~~~~~~~~l~~~~~~------------~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~  172 (369)
T 3zwl_B          111 TWK--SP----VPVKRVEFSPCGNYFLAILDN------------VMKNPGSINIYEIERDSATHELTKVSEEPIHKIITH  172 (369)
T ss_dssp             EEE--CS----SCEEEEEECTTSSEEEEEECC------------BTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECC
T ss_pred             Eee--cC----CCeEEEEEccCCCEEEEecCC------------ccCCCCEEEEEEecCCccceeecccccceeeeccCC
Confidence            332  11    246688999999866653210            00122566666643221            111111 


Q ss_pred             -CccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 017371          217 -GFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       217 -~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~  284 (372)
                       +......++++++++.++++. .++.|..|++.... .....+. ...+....++++++|++.++...
T Consensus       173 ~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~-~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~  238 (369)
T 3zwl_B          173 EGLDAATVAGWSTKGKYIIAGH-KDGKISKYDVSNNY-EYVDSID-LHEKSISDMQFSPDLTYFITSSR  238 (369)
T ss_dssp             TTCCCEEEEEECGGGCEEEEEE-TTSEEEEEETTTTT-EEEEEEE-CCSSCEEEEEECTTSSEEEEEET
T ss_pred             cCccceeEEEEcCCCCEEEEEc-CCCEEEEEECCCCc-EeEEEEe-cCCCceeEEEECCCCCEEEEecC
Confidence             111456788999999776655 46689999886421 1122222 23334677899999987666654

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=98.80  E-value=5.7e-07  Score=83.48  Aligned_cols=182  Identities=10%  Similarity=0.049  Sum_probs=106.4

Q ss_pred             CCccEEEcCCCcEEEEe-c------CCeEEEEe--CCce-----EEEEecCCCcccCeEEcCCCCEEEEeCCCcEEEEc-
Q 017371           80 HPEDASMDKNGVIYTAT-R------DGWIKRLQ--DGTW-----VNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-  144 (372)
Q Consensus        80 ~p~~i~~d~~G~l~v~~-~------~g~i~~~~--~g~~-----~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~-  144 (372)
                      ...++++.+||.+.++. .      +|.|..++  ++..     ........... .+++.+++.++++.....|..++ 
T Consensus        44 ~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~-~~~~s~d~~~l~~s~dg~v~lWd~  122 (357)
T 4g56_B           44 QIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVT-DVAWVSEKGILVASDSGAVELWEI  122 (357)
T ss_dssp             EEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEE-EEEEETTTEEEEEETTSCEEEC--
T ss_pred             CEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEE-EEEEcCCCCEEEEECCCEEEEeec
Confidence            35678999999777654 3      56777776  3321     11112223345 89999999988887655566666 


Q ss_pred             CCC--cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCC-ccCc
Q 017371          145 EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFA  221 (372)
Q Consensus       145 ~~g--~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~-~~~~  221 (372)
                      .++  .........+ ....+..+++.++|+..++-+                 .++.|..+|..+++......+ ....
T Consensus       123 ~~~~~~~~~~~~~~~-h~~~V~~v~~spdg~~l~sgs-----------------~dg~v~iwd~~~~~~~~~~~~h~~~v  184 (357)
T 4g56_B          123 LEKESLLVNKFAKYE-HDDIVKTLSVFSDGTQAVSGG-----------------KDFSVKVWDLSQKAVLKSYNAHSSEV  184 (357)
T ss_dssp             ------CCCCEEECC-CSSCEEEEEECSSSSEEEEEE-----------------TTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred             cccceeEEEeeccCC-CCCCEEEEEECCCCCEEEEEe-----------------CCCeEEEEECCCCcEEEEEcCCCCCE
Confidence            444  1111111111 113567899999998777632                 567899999988876655543 2334


Q ss_pred             ceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCC-CEEEE
Q 017371          222 NGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDG-TFWIA  281 (372)
Q Consensus       222 ~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G-~lwva  281 (372)
                      +.++++++++.++++...++.|..+++...+......+. .....+..+++.+++ ++.++
T Consensus       185 ~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~-~~~~~v~~v~~sp~~~~~la~  244 (357)
T 4g56_B          185 NCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFC-ASDTIPTSVTWHPEKDDTFAC  244 (357)
T ss_dssp             EEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCT-TCCSCEEEEEECTTSTTEEEE
T ss_pred             EEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeec-cccccccchhhhhcccceEEE
Confidence            678899998766766666677888877543222111111 122335567787765 44443

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.79  E-value=3.8e-06  Score=78.63  Aligned_cols=137  Identities=5%  Similarity=-0.142  Sum_probs=87.9

Q ss_pred             cEEEEec--CC---eEEEEe--CCceEEEEecCCCcccCeEEcCCCC-EEEEeC----------CCcEEEEc-CCC--cE
Q 017371           91 VIYTATR--DG---WIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDN----------ANGLHKVS-EDG--VE  149 (372)
Q Consensus        91 ~l~v~~~--~g---~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~-l~v~~~----------~~gv~~~~-~~g--~~  149 (372)
                      .+|+.+.  .+   .|+.+|  ++++...... +..- +++++|||+ |||++.          ...+..+| .+.  ..
T Consensus        34 ~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~-g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~  111 (373)
T 2mad_H           34 RSYINLPAHHSAIIQQWVLDAGSGSILGHVNG-GFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIA  111 (373)
T ss_pred             EEEEeCCcccCCccEEEEEECCCCeEEEEecC-CCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEE
Confidence            5777763  22   778888  5554433333 3334 999999995 899863          23477888 444  22


Q ss_pred             EEeeecCCc--ccccccceEEccCC-cEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEE
Q 017371          150 NFLSYVNGS--KLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVAL  226 (372)
Q Consensus       150 ~l~~~~~~~--~~~~~~~l~~d~dG-~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~  226 (372)
                      .+.......  ....|.++++++|| .+|+++..                ..+.|..+| ++++....  .+..+.++.+
T Consensus       112 ~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~----------------~~~~v~viD-~t~~~~~~--~i~~~~~~~~  172 (373)
T 2mad_H          112 DIELPDAPRFDVGPYSWMNANTPNNADLLFFQFA----------------AGPAVGLVV-QGGSSDDQ--LLSSPTCYHI  172 (373)
T ss_pred             EEECCCccccccCCCccceEECCCCCEEEEEecC----------------CCCeEEEEE-CCCCEEeE--EcCCCceEEE
Confidence            222110000  01357899999999 58887531                246799999 88876433  0334455677


Q ss_pred             ecCCCEEEEEeCCCCeEEEEEc
Q 017371          227 SRDEDYVVVCESWKFRCRKYWL  248 (372)
Q Consensus       227 ~~dg~~l~v~~~~~~~i~~~~~  248 (372)
                      .++++..|++.+.++++..++.
T Consensus       173 ~~~~~~~~~~~~~dg~~~~vd~  194 (373)
T 2mad_H          173 HPGAPSTFYLLCAQGGLAKTDH  194 (373)
T ss_pred             EeCCCceEEEEcCCCCEEEEEC
Confidence            7888778888888888888887

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.79  E-value=1.3e-06  Score=81.45  Aligned_cols=101  Identities=13%  Similarity=0.117  Sum_probs=66.8

Q ss_pred             ceEEccCC-cEEEEeC-CCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCCCCe
Q 017371          165 DVVEASDG-SLYFTVS-SSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFR  242 (372)
Q Consensus       165 ~l~~d~dG-~i~vtd~-~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~  242 (372)
                      .+++++|| ++|++.. ....+        ......+.|+.+|.++++.......-. |.+++++|||++||+++.  +.
T Consensus       258 ~~a~~~dg~~lyv~~~~~~~~~--------~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~--~~  326 (361)
T 2oiz_A          258 LVGLHRASGRMYVFMHPDGKEG--------THKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG--GN  326 (361)
T ss_dssp             CEEEETTTTEEEEEEESSCCTT--------CTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS--SC
T ss_pred             EEEEecCCCeEEEEEccCCCcc--------cccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC--Ce
Confidence            37888874 6787643 10000        000124589999999887665444444 999999999999999885  78


Q ss_pred             EEEEEccCCCCcceeeeccCCCCCCceeEEcCCCC
Q 017371          243 CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT  277 (372)
Q Consensus       243 i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~  277 (372)
                      |..|+..+.++.....+. .....|.+++++++|+
T Consensus       327 v~v~D~~t~~l~~~~~i~-~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          327 VNVYDISQPEPKLLRTIE-GAAEASLQVQFHPVGG  360 (361)
T ss_dssp             EEEEECSSSSCEEEEEET-TSCSSEEEEEECCCSC
T ss_pred             EEEEECCCCcceeeEEec-cCCCCcEEEEecCCCC
Confidence            999987654222222322 2334699999999985

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.79  E-value=1.2e-06  Score=77.47  Aligned_cols=178  Identities=12%  Similarity=0.060  Sum_probs=111.3

Q ss_pred             CCCccEEEcCCCcEEEEecCCeEEEEe--C-CceEEEEecC--CCcccCeEEcCCCCEEEEeC-----CCcEEEEc-CCC
Q 017371           79 NHPEDASMDKNGVIYTATRDGWIKRLQ--D-GTWVNWKFID--SQTLVGLTSTKEGHLIICDN-----ANGLHKVS-EDG  147 (372)
Q Consensus        79 ~~p~~i~~d~~G~l~v~~~~g~i~~~~--~-g~~~~~~~~~--~~p~~gl~~d~dG~l~v~~~-----~~gv~~~~-~~g  147 (372)
                      ....++++.++|..++...++.|+.++  + ++...+....  ..+. .+++.++|+.++...     ...|+.++ .++
T Consensus        42 ~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~-~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~  120 (297)
T 2ojh_A           42 ELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNN-DHGISPDGALYAISDKVEFGKSAIYLLPSTGG  120 (297)
T ss_dssp             SCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCS-CCEECTTSSEEEEEECTTTSSCEEEEEETTCC
T ss_pred             cceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEecccccccccc-ceEECCCCCEEEEEEeCCCCcceEEEEECCCC
Confidence            357789999999766555688999999  5 5555443322  3345 899999997555433     23577777 444


Q ss_pred             -cEEEeeecCCcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEE
Q 017371          148 -VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVA  225 (372)
Q Consensus       148 -~~~l~~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~  225 (372)
                       ...+...      .....+++.+||+ |+++...               ...-.||.++..+++...+.........++
T Consensus       121 ~~~~~~~~------~~~~~~~~spdg~~l~~~~~~---------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  179 (297)
T 2ojh_A          121 TPRLMTKN------LPSYWHGWSPDGKSFTYCGIR---------------DQVFDIYSMDIDSGVETRLTHGEGRNDGPD  179 (297)
T ss_dssp             CCEECCSS------SSEEEEEECTTSSEEEEEEEE---------------TTEEEEEEEETTTCCEEECCCSSSCEEEEE
T ss_pred             ceEEeecC------CCccceEECCCCCEEEEEECC---------------CCceEEEEEECCCCcceEcccCCCccccce
Confidence             4433211      1255678999996 4444221               122378888887777766555445567899


Q ss_pred             EecCCCEEEEEeC--CCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEE
Q 017371          226 LSRDEDYVVVCES--WKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAI  282 (372)
Q Consensus       226 ~~~dg~~l~v~~~--~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~  282 (372)
                      ++||++.++++..  +..+|+.++..+..   ...+. ........+.++++|+..+..
T Consensus       180 ~s~dg~~l~~~~~~~~~~~i~~~~~~~~~---~~~~~-~~~~~~~~~~~s~dg~~l~~~  234 (297)
T 2ojh_A          180 YSPDGRWIYFNSSRTGQMQIWRVRVDGSS---VERIT-DSAYGDWFPHPSPSGDKVVFV  234 (297)
T ss_dssp             ECTTSSEEEEEECTTSSCEEEEEETTSSC---EEECC-CCSEEEEEEEECTTSSEEEEE
T ss_pred             ECCCCCEEEEEecCCCCccEEEECCCCCC---cEEEe-cCCcccCCeEECCCCCEEEEE
Confidence            9999998887753  44567777755432   22222 112234457889999754433

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=98.78  E-value=2.4e-05  Score=71.73  Aligned_cols=185  Identities=11%  Similarity=0.106  Sum_probs=113.6

Q ss_pred             CCCCCCCccEEEcCCCc-EEEEecCCeEEEEe--CCc-eEEEEecCCCcccCeEEcCCCCEEEEeCCCc-EEEEc-CCC-
Q 017371           75 EGSVNHPEDASMDKNGV-IYTATRDGWIKRLQ--DGT-WVNWKFIDSQTLVGLTSTKEGHLIICDNANG-LHKVS-EDG-  147 (372)
Q Consensus        75 ~g~~~~p~~i~~d~~G~-l~v~~~~g~i~~~~--~g~-~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~g-v~~~~-~~g-  147 (372)
                      .|......++++.++|. |..++.+|.|..|+  +++ ...+........ .+++.++|++.++....+ +..++ ..+ 
T Consensus        52 ~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~s~~~d~~v~iw~~~~~~  130 (340)
T 1got_B           52 RGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVM-TCAYAPSGNYVACGGLDNICSIYNLKTRE  130 (340)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEE-EEEECTTSSEEEEEETTCEEEEEETTTCS
T ss_pred             cCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEE-EEEECCCCCEEEEEeCCCeEEEEECccCC
Confidence            34445667899999886 45566899999999  444 333333333455 899999998766654444 55565 332 


Q ss_pred             --cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCc-cCcceE
Q 017371          148 --VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF-YFANGV  224 (372)
Q Consensus       148 --~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~-~~~~gi  224 (372)
                        ..... ...+. ...+..+.+.+++.+..+                  ..++.|..+|..+++......+. .....+
T Consensus       131 ~~~~~~~-~~~~h-~~~v~~~~~~~~~~l~s~------------------s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~  190 (340)
T 1got_B          131 GNVRVSR-ELAGH-TGYLSCCRFLDDNQIVTS------------------SGDTTCALWDIETGQQTTTFTGHTGDVMSL  190 (340)
T ss_dssp             BSCEEEE-EEECC-SSCEEEEEEEETTEEEEE------------------ETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred             CcceeEE-EecCC-CccEEEEEECCCCcEEEE------------------ECCCcEEEEECCCCcEEEEEcCCCCceEEE
Confidence              22221 11111 123456677777775543                  24677888998877765544432 234678


Q ss_pred             EEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 017371          225 ALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       225 ~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~  284 (372)
                      +++|+++ ++++...++.|..+++...+  ....+. ........+++.++|++.++...
T Consensus       191 ~~~~~~~-~l~sg~~d~~v~~wd~~~~~--~~~~~~-~h~~~v~~v~~~p~~~~l~s~s~  246 (340)
T 1got_B          191 SLAPDTR-LFVSGACDASAKLWDVREGM--CRQTFT-GHESDINAICFFPNGNAFATGSD  246 (340)
T ss_dssp             EECTTSS-EEEEEETTSCEEEEETTTCS--EEEEEC-CCSSCEEEEEECTTSSEEEEEET
T ss_pred             EECCCCC-EEEEEeCCCcEEEEECCCCe--eEEEEc-CCcCCEEEEEEcCCCCEEEEEcC
Confidence            8999998 44555556778888875432  122232 22334667899999988777654

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.78  E-value=2.7e-06  Score=85.97  Aligned_cols=199  Identities=14%  Similarity=0.083  Sum_probs=113.9

Q ss_pred             CCCccEEEcCCCcEEEEecCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCCEEEEeCCCcEEEEc-CC-----C-cE
Q 017371           79 NHPEDASMDKNGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-ED-----G-VE  149 (372)
Q Consensus        79 ~~p~~i~~d~~G~l~v~~~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~-~~-----g-~~  149 (372)
                      ..+.++++.+++.+.++ .++.|+.++  +++...+....+... .+++.|||+..+......|+.++ .+     | ..
T Consensus        82 ~~v~~~~~spd~~~~~~-~~~~i~~~d~~~~~~~~l~~~~~~~~-~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~  159 (706)
T 2z3z_A           82 FPSFRTLDAGRGLVVLF-TQGGLVGFDMLARKVTYLFDTNEETA-SLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAI  159 (706)
T ss_dssp             CCCEEEEETTTTEEEEE-ETTEEEEEETTTTEEEEEECCTTCCT-TCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCE
T ss_pred             cCceeEEECCCCeEEEE-ECCEEEEEECCCCceEEccCCccccc-CCcCCCCCCEEEEEECCeEEEEecCcccccCCCcE
Confidence            35778999999666655 468999999  566655554445566 89999999754444445688888 66     6 43


Q ss_pred             EEeeecCC----------cccccccceEEccCCc-EEEEeC--CC--CCCCccc----------ccc-cccccCCCeEEE
Q 017371          150 NFLSYVNG----------SKLRFANDVVEASDGS-LYFTVS--SS--KYLPHEY----------CLD-ILEGKPHGQLLK  203 (372)
Q Consensus       150 ~l~~~~~~----------~~~~~~~~l~~d~dG~-i~vtd~--~~--~~~~~~~----------~~~-~~~~~~~g~v~~  203 (372)
                      .+......          ..+..+.++++.+||+ |+++..  +.  .+.....          ... .........|+.
T Consensus       160 ~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~  239 (706)
T 2z3z_A          160 AVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGI  239 (706)
T ss_dssp             ESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEE
T ss_pred             EeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEE
Confidence            32211111          0011247899999996 444321  00  0000000          000 001123467999


Q ss_pred             EeCCCCeEEEEeCCc---cCcceEEEecCCCEEEEEeCCC----CeEEEEEccCCCCcceeeec-cCCCC---CCceeEE
Q 017371          204 YDPSSNITTLVADGF---YFANGVALSRDEDYVVVCESWK----FRCRKYWLKGERKGKLETFA-ENLPG---APDNINL  272 (372)
Q Consensus       204 ~d~~t~~~~~~~~~~---~~~~gi~~~~dg~~l~v~~~~~----~~i~~~~~~g~~~~~~~~~~-~~~~g---~p~~i~~  272 (372)
                      +|.++++...+....   .....++|+|||+.++++....    ..|+.+++.+.+  ...... .....   ....+++
T Consensus       240 ~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~--~~~~~~~~~~~~~~~~~~~~~~  317 (706)
T 2z3z_A          240 YHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGR--FVRTLFVETDKHYVEPLHPLTF  317 (706)
T ss_dssp             EETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCC--EEEEEEEEECSSCCCCCSCCEE
T ss_pred             EECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCc--eeeEEEEccCCCeECccCCcee
Confidence            999988876654321   2345689999999888865433    378888876541  111111 11111   1356788


Q ss_pred             cC--CCCEEEE
Q 017371          273 AP--DGTFWIA  281 (372)
Q Consensus       273 d~--~G~lwva  281 (372)
                      .+  ||.+.++
T Consensus       318 sp~~dg~~l~~  328 (706)
T 2z3z_A          318 LPGSNNQFIWQ  328 (706)
T ss_dssp             CTTCSSEEEEE
T ss_pred             ecCCCCEEEEE
Confidence            88  8874443

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=98.76  E-value=6.7e-06  Score=76.81  Aligned_cols=229  Identities=14%  Similarity=0.097  Sum_probs=139.0

Q ss_pred             CCccEEEcCCCc-EEEEecCCeEEEEe-CCceE-EEEecCCCcccCeEEcCCCCEEEE-eCCCcEEEEc-CCC--cEEEe
Q 017371           80 HPEDASMDKNGV-IYTATRDGWIKRLQ-DGTWV-NWKFIDSQTLVGLTSTKEGHLIIC-DNANGLHKVS-EDG--VENFL  152 (372)
Q Consensus        80 ~p~~i~~d~~G~-l~v~~~~g~i~~~~-~g~~~-~~~~~~~~p~~gl~~d~dG~l~v~-~~~~gv~~~~-~~g--~~~l~  152 (372)
                      ...++++.++|. |+++..+|.|..|+ +++.. .+........ .+++.++|+.+++ .....+..++ .++  ...+.
T Consensus       110 ~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  188 (425)
T 1r5m_A          110 QVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIV-SVKWNKDGTHIISMDVENVTILWNVISGTVMQHFE  188 (425)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCCSCEE-EEEECTTSSEEEEEETTCCEEEEETTTTEEEEEEC
T ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeeccCCCccEE-EEEECCCCCEEEEEecCCeEEEEECCCCcEEEEee
Confidence            456788998885 56666899999999 55533 3332333445 8999999975544 4445577788 566  33222


Q ss_pred             eecCCc----------ccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCC-ccCc
Q 017371          153 SYVNGS----------KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFA  221 (372)
Q Consensus       153 ~~~~~~----------~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~-~~~~  221 (372)
                      ......          ....+..+++.+++.++++.                  .++.|+.+|..+++....... ....
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~g~i~~~d~~~~~~~~~~~~~~~~i  250 (425)
T 1r5m_A          189 LKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPG------------------PKGAIFVYQITEKTPTGKLIGHHGPI  250 (425)
T ss_dssp             CC---------------CCCBSCCEEEETTEEEEEC------------------GGGCEEEEETTCSSCSEEECCCSSCE
T ss_pred             ccccCccceeeccccCCcceeeEEEEcCCCEEEEEc------------------CCCeEEEEEcCCCceeeeeccCCCce
Confidence            111000          00116678888888766642                  457799999876654433332 2234


Q ss_pred             ceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHH
Q 017371          222 NGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKH  301 (372)
Q Consensus       222 ~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~  301 (372)
                      ..++++++++.++.+. .++.|..+++...+.  ...+. ...+....+++.++| ++++...                 
T Consensus       251 ~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~--~~~~~-~~~~~i~~~~~~~~~-~l~~~~~-----------------  308 (425)
T 1r5m_A          251 SVLEFNDTNKLLLSAS-DDGTLRIWHGGNGNS--QNCFY-GHSQSIVSASWVGDD-KVISCSM-----------------  308 (425)
T ss_dssp             EEEEEETTTTEEEEEE-TTSCEEEECSSSBSC--SEEEC-CCSSCEEEEEEETTT-EEEEEET-----------------
T ss_pred             EEEEECCCCCEEEEEc-CCCEEEEEECCCCcc--ceEec-CCCccEEEEEECCCC-EEEEEeC-----------------
Confidence            5789999999666655 456788888764321  12222 223346678899999 4444444                 


Q ss_pred             HHHhcCccccccccCCCceEEEEECC-CCcEEEEEECCCCCeeccceeeEEE-CC-EEEEEeCCCCeEEEEeC
Q 017371          302 VLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQV-DN-HLYVISLTSNFIGKVQL  371 (372)
Q Consensus       302 ~~~~~p~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~-~g-~L~igs~~~~~i~~~~~  371 (372)
                                       .+.|..++. +++.+..+....+    .++.+... ++ .|+.++ ....|.++++
T Consensus       309 -----------------d~~i~i~d~~~~~~~~~~~~~~~----~i~~~~~s~~~~~l~~~~-~dg~i~i~~~  359 (425)
T 1r5m_A          309 -----------------DGSVRLWSLKQNTLLALSIVDGV----PIFAGRISQDGQKYAVAF-MDGQVNVYDL  359 (425)
T ss_dssp             -----------------TSEEEEEETTTTEEEEEEECTTC----CEEEEEECTTSSEEEEEE-TTSCEEEEEC
T ss_pred             -----------------CCcEEEEECCCCcEeEecccCCc----cEEEEEEcCCCCEEEEEE-CCCeEEEEEC
Confidence                             457777774 5777777765433    36666665 34 455555 4567777765

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=98.75  E-value=7.8e-06  Score=78.06  Aligned_cols=178  Identities=11%  Similarity=0.097  Sum_probs=109.0

Q ss_pred             ccEEEcCCCcEEEEecCCeEEEEe--CCc----eEEEEecC---------------------------------------
Q 017371           82 EDASMDKNGVIYTATRDGWIKRLQ--DGT----WVNWKFID---------------------------------------  116 (372)
Q Consensus        82 ~~i~~d~~G~l~v~~~~g~i~~~~--~g~----~~~~~~~~---------------------------------------  116 (372)
                      .+++++++|.+.++..++.|..|+  +|+    +..|....                                       
T Consensus         8 ~~v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (450)
T 2vdu_B            8 QNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSIKRT   87 (450)
T ss_dssp             CEEEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC---------------------------------------
T ss_pred             EEEEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcccccc
Confidence            468889999877777788899998  665    23333111                                       


Q ss_pred             ---------------CCcccCeEEcCCCCEE-EEeCC-CcEEEEc-C--CC--cEEEeeecCCcccccccceEEccCCcE
Q 017371          117 ---------------SQTLVGLTSTKEGHLI-ICDNA-NGLHKVS-E--DG--VENFLSYVNGSKLRFANDVVEASDGSL  174 (372)
Q Consensus       117 ---------------~~p~~gl~~d~dG~l~-v~~~~-~gv~~~~-~--~g--~~~l~~~~~~~~~~~~~~l~~d~dG~i  174 (372)
                                     +... ++++.++|+.+ ++... ..+..++ .  ++  ...+......   ..+..+++.++|+.
T Consensus        88 ~~~~~~~~~~~~~~~~~v~-~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~---~~v~~~~~sp~~~~  163 (450)
T 2vdu_B           88 AAKVPSPGLGAPPIYSYIR-NLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFS---KRPNAISIAEDDTT  163 (450)
T ss_dssp             ------------CCCCCEE-EEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECS---SCEEEEEECTTSSE
T ss_pred             CccccCCCCCCCccCCceE-EEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCC---CCceEEEEcCCCCE
Confidence                           0245 89999999864 54433 4466666 5  55  4443221111   24678999999976


Q ss_pred             EEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEE-----EEeCCccCcceEEEecC---CCEEEEEeCCCCeEEEE
Q 017371          175 YFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT-----LVADGFYFANGVALSRD---EDYVVVCESWKFRCRKY  246 (372)
Q Consensus       175 ~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~-----~~~~~~~~~~gi~~~~d---g~~l~v~~~~~~~i~~~  246 (372)
                      .++-                 ...+.++.++..+++..     .+.........++++|+   ++.++.+. .+..|..+
T Consensus       164 l~~~-----------------~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~-~d~~i~vw  225 (450)
T 2vdu_B          164 VIIA-----------------DKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSD-RDEHIKIS  225 (450)
T ss_dssp             EEEE-----------------ETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEE-TTSCEEEE
T ss_pred             EEEE-----------------eCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEc-CCCcEEEE
Confidence            5542                 24678898987655432     11111233457899999   76555554 56678888


Q ss_pred             EccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 017371          247 WLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       247 ~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~  284 (372)
                      ++...+.  ...+.....+....+++. +|++.++...
T Consensus       226 d~~~~~~--~~~~~~~h~~~v~~~~~s-d~~~l~s~~~  260 (450)
T 2vdu_B          226 HYPQCFI--VDKWLFGHKHFVSSICCG-KDYLLLSAGG  260 (450)
T ss_dssp             EESCTTC--EEEECCCCSSCEEEEEEC-STTEEEEEES
T ss_pred             ECCCCce--eeeeecCCCCceEEEEEC-CCCEEEEEeC
Confidence            8864321  222232333456788899 8987776655

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=98.75  E-value=1.4e-05  Score=74.85  Aligned_cols=227  Identities=13%  Similarity=0.107  Sum_probs=133.3

Q ss_pred             CccEEEcCCCc-EEEEecCCeEEEEe--CCceEEEEec-CCCcccCeEEcCCCCEEEEeCC-CcEEEEc-CCC-c-EEEe
Q 017371           81 PEDASMDKNGV-IYTATRDGWIKRLQ--DGTWVNWKFI-DSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG-V-ENFL  152 (372)
Q Consensus        81 p~~i~~d~~G~-l~v~~~~g~i~~~~--~g~~~~~~~~-~~~p~~gl~~d~dG~l~v~~~~-~gv~~~~-~~g-~-~~l~  152 (372)
                      ..++++.++|. |.++..+|.|..|+  +++....... ..... .+++.++|+.+++... ..+..++ .++ . ..+.
T Consensus       126 v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~-~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~  204 (393)
T 1erj_A          126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIY-SLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS  204 (393)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE-EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             EEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEE-EEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE
Confidence            34788999885 45566899999999  4544333222 23345 8999999986666444 4466777 666 2 2221


Q ss_pred             eecCCcccccccceEEcc-CCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeC-------C-ccCcce
Q 017371          153 SYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-------G-FYFANG  223 (372)
Q Consensus       153 ~~~~~~~~~~~~~l~~d~-dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~-------~-~~~~~g  223 (372)
                      .  .    ..+..+++.+ +|+++++-+                 .++.|..+|..+++......       + ......
T Consensus       205 ~--~----~~v~~~~~~~~~~~~l~~~s-----------------~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~  261 (393)
T 1erj_A          205 I--E----DGVTTVAVSPGDGKYIAAGS-----------------LDRAVRVWDSETGFLVERLDSENESGTGHKDSVYS  261 (393)
T ss_dssp             C--S----SCEEEEEECSTTCCEEEEEE-----------------TTSCEEEEETTTCCEEEEEC------CCCSSCEEE
T ss_pred             c--C----CCcEEEEEECCCCCEEEEEc-----------------CCCcEEEEECCCCcEEEeecccccCCCCCCCCEEE
Confidence            1  1    2345678887 787766532                 46778888887766443321       1 122357


Q ss_pred             EEEecCCCEEEEEeCCCCeEEEEEccCCCC---------ccee-eeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHh
Q 017371          224 VALSRDEDYVVVCESWKFRCRKYWLKGERK---------GKLE-TFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKIL  293 (372)
Q Consensus       224 i~~~~dg~~l~v~~~~~~~i~~~~~~g~~~---------~~~~-~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~  293 (372)
                      ++++++++.++.+ +.++.|..+++.....         +... .+. ........+++.++|.+.++...         
T Consensus       262 v~~~~~g~~l~s~-s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~sgs~---------  330 (393)
T 1erj_A          262 VVFTRDGQSVVSG-SLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI-GHKDFVLSVATTQNDEYILSGSK---------  330 (393)
T ss_dssp             EEECTTSSEEEEE-ETTSEEEEEEC---------------CEEEEEE-CCSSCEEEEEECGGGCEEEEEET---------
T ss_pred             EEECCCCCEEEEE-eCCCEEEEEECCCCCCcccccCCCCCcceEEEe-cccCcEEEEEECCCCCEEEEEeC---------
Confidence            8999999866544 4566788887754211         0011 111 12223456778888876666554         


Q ss_pred             hcchhHHHHHHhcCccccccccCCCceEEEEECC-CCcEEEEEECCCCCeeccceeeEEE-------CCEEEEEeCCCCe
Q 017371          294 NSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQV-------DNHLYVISLTSNF  365 (372)
Q Consensus       294 ~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~-------~g~L~igs~~~~~  365 (372)
                                               .+.|..+|. +|+.+..+....+    .+.++...       ++.+.+..-....
T Consensus       331 -------------------------D~~v~iwd~~~~~~~~~l~~h~~----~v~~v~~~~~~~~~p~~~~l~sgs~Dg~  381 (393)
T 1erj_A          331 -------------------------DRGVLFWDKKSGNPLLMLQGHRN----SVISVAVANGSSLGPEYNVFATGSGDCK  381 (393)
T ss_dssp             -------------------------TSEEEEEETTTCCEEEEEECCSS----CEEEEEECSSCTTCTTCEEEEEEETTSE
T ss_pred             -------------------------CCeEEEEECCCCeEEEEECCCCC----CEEEEEecCCcCcCCCCCEEEEECCCCc
Confidence                                     456777774 5777777765433    35555553       2455555445566


Q ss_pred             EEEEeC
Q 017371          366 IGKVQL  371 (372)
Q Consensus       366 i~~~~~  371 (372)
                      |.++++
T Consensus       382 i~iW~~  387 (393)
T 1erj_A          382 ARIWKY  387 (393)
T ss_dssp             EEEEEE
T ss_pred             EEECcc
Confidence            666553

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=98.75  E-value=5.4e-06  Score=77.88  Aligned_cols=224  Identities=13%  Similarity=0.054  Sum_probs=134.4

Q ss_pred             EEcCCCc-EEEEecCCeEEEEe--CCceEEEEe-cCCCcccCeEEcCCCCEEEEeCC-CcEEEEc-CCC--cEEEeeecC
Q 017371           85 SMDKNGV-IYTATRDGWIKRLQ--DGTWVNWKF-IDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG--VENFLSYVN  156 (372)
Q Consensus        85 ~~d~~G~-l~v~~~~g~i~~~~--~g~~~~~~~-~~~~p~~gl~~d~dG~l~v~~~~-~gv~~~~-~~g--~~~l~~~~~  156 (372)
                      ++.++|. |.+++.+|.|..|+  .++...... ..+... .+++.++|+++++... ..+..++ .++  ...+...  
T Consensus       104 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h--  180 (420)
T 3vl1_A          104 TAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEIT-KLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGH--  180 (420)
T ss_dssp             EECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEE-EEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECC--
T ss_pred             EEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccE-EEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCC--
Confidence            4556774 55666899999998  444443322 223445 8999999986665444 4477777 555  4444211  


Q ss_pred             CcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCc------------------
Q 017371          157 GSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF------------------  218 (372)
Q Consensus       157 ~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~------------------  218 (372)
                         ...+..+++.++|+..++-+                 .++.|..+|..+++........                  
T Consensus       181 ---~~~v~~~~~~~~~~~l~s~~-----------------~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  240 (420)
T 3vl1_A          181 ---RATVTDIAIIDRGRNVLSAS-----------------LDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDR  240 (420)
T ss_dssp             ---SSCEEEEEEETTTTEEEEEE-----------------TTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCS
T ss_pred             ---CCcEEEEEEcCCCCEEEEEc-----------------CCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcc
Confidence               13467889999998766532                 4677888888777655544321                  


Q ss_pred             -------cCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCC-EEEEEecCchhHH
Q 017371          219 -------YFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRM  290 (372)
Q Consensus       219 -------~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwva~~~~~~~~~  290 (372)
                             .....++++++++.++.+. .++.|..|++...+  ....+.....+....++++++|. +.++...      
T Consensus       241 ~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~------  311 (420)
T 3vl1_A          241 QLHEISTSKKNNLEFGTYGKYVIAGH-VSGVITVHNVFSKE--QTIQLPSKFTCSCNSLTVDGNNANYIYAGYE------  311 (420)
T ss_dssp             SCGGGCCCCCCTTCSSCTTEEEEEEE-TTSCEEEEETTTCC--EEEEECCTTSSCEEEEEECSSCTTEEEEEET------
T ss_pred             eeeecccCcccceEEcCCCCEEEEEc-CCCeEEEEECCCCc--eeEEcccccCCCceeEEEeCCCCCEEEEEeC------
Confidence                   1223466788998665554 46678888886432  12222222233466789999997 5555544      


Q ss_pred             HHhhcchhHHHHHHhcCccccccccCCCceEEEEECCC-C-cEEEEEECCCCCeeccceeeEEECCEEEEEeCCCCeEEE
Q 017371          291 KILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED-G-TIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGK  368 (372)
Q Consensus       291 ~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~-g-~~~~~~~~~~g~~~~~~t~~~~~~g~L~igs~~~~~i~~  368 (372)
                                                  .+.|..+|.. + +.+..+....+.   .++.+...++++++.......|..
T Consensus       312 ----------------------------dg~i~vwd~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~l~s~~~d~~v~i  360 (420)
T 3vl1_A          312 ----------------------------NGMLAQWDLRSPECPVGEFLINEGT---PINNVYFAAGALFVSSGFDTSIKL  360 (420)
T ss_dssp             ----------------------------TSEEEEEETTCTTSCSEEEEESTTS---CEEEEEEETTEEEEEETTTEEEEE
T ss_pred             ----------------------------CCeEEEEEcCCCcCchhhhhccCCC---CceEEEeCCCCEEEEecCCccEEE
Confidence                                        3567777743 3 334455432222   356666666666666656666766


Q ss_pred             EeC
Q 017371          369 VQL  371 (372)
Q Consensus       369 ~~~  371 (372)
                      +++
T Consensus       361 w~~  363 (420)
T 3vl1_A          361 DII  363 (420)
T ss_dssp             EEE
T ss_pred             Eec
Confidence            654

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=98.74  E-value=1.5e-06  Score=88.29  Aligned_cols=136  Identities=10%  Similarity=0.017  Sum_probs=87.2

Q ss_pred             CCccEEEcCCCc-EEEEec-CC-----eEEEEe--CCceEEEEecCC-------------------------CcccCeEE
Q 017371           80 HPEDASMDKNGV-IYTATR-DG-----WIKRLQ--DGTWVNWKFIDS-------------------------QTLVGLTS  125 (372)
Q Consensus        80 ~p~~i~~d~~G~-l~v~~~-~g-----~i~~~~--~g~~~~~~~~~~-------------------------~p~~gl~~  125 (372)
                      .+.++++.+||. |+++.. +|     .|+.++  +|+.+.......                         ... .+++
T Consensus        38 ~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~  116 (741)
T 2ecf_A           38 TLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIV-DYQW  116 (741)
T ss_dssp             CCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESC-CCEE
T ss_pred             CCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcc-eeEE
Confidence            577899999995 666665 77     899999  566554433211                         135 8999


Q ss_pred             cCCCCEEEEeCCCcEEEEc-CCCc--EEEeeecCCcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeE
Q 017371          126 TKEGHLIICDNANGLHKVS-EDGV--ENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQL  201 (372)
Q Consensus       126 d~dG~l~v~~~~~gv~~~~-~~g~--~~l~~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v  201 (372)
                      +|||+..+......|+.++ .++.  +..  ..... ...+..+++.|||+ |.++                   ..+.|
T Consensus       117 SpDg~~l~~~~~~~i~~~d~~~~~~~~~~--~l~~~-~~~~~~~~~SPDG~~la~~-------------------~~~~i  174 (741)
T 2ecf_A          117 SPDAQRLLFPLGGELYLYDLKQEGKAAVR--QLTHG-EGFATDAKLSPKGGFVSFI-------------------RGRNL  174 (741)
T ss_dssp             CTTSSEEEEEETTEEEEEESSSCSTTSCC--BCCCS-SSCEEEEEECTTSSEEEEE-------------------ETTEE
T ss_pred             CCCCCEEEEEeCCcEEEEECCCCCcceEE--EcccC-CcccccccCCCCCCEEEEE-------------------eCCcE
Confidence            9999854443345688888 4331  111  00110 12456789999997 4443                   13479


Q ss_pred             EEEeCCCCeEEEEeCCccC-----------------cceEEEecCCCEEEEEeC
Q 017371          202 LKYDPSSNITTLVADGFYF-----------------ANGVALSRDEDYVVVCES  238 (372)
Q Consensus       202 ~~~d~~t~~~~~~~~~~~~-----------------~~gi~~~~dg~~l~v~~~  238 (372)
                      +.+|.++++...+......                 ..+++|+|||++|+++..
T Consensus       175 ~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~  228 (741)
T 2ecf_A          175 WVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARI  228 (741)
T ss_dssp             EEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEE
T ss_pred             EEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEE
Confidence            9999988877665432221                 467999999998888753

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=98.73  E-value=5.8e-05  Score=68.72  Aligned_cols=182  Identities=13%  Similarity=0.103  Sum_probs=111.3

Q ss_pred             CCCCCCccEEEcCC----C-cEEEEecCCeEEEEe--CCceEE-EEe-c-CCCcccCeEEcCCCCEEEEeCC-CcEEEEc
Q 017371           76 GSVNHPEDASMDKN----G-VIYTATRDGWIKRLQ--DGTWVN-WKF-I-DSQTLVGLTSTKEGHLIICDNA-NGLHKVS  144 (372)
Q Consensus        76 g~~~~p~~i~~d~~----G-~l~v~~~~g~i~~~~--~g~~~~-~~~-~-~~~p~~gl~~d~dG~l~v~~~~-~gv~~~~  144 (372)
                      +.-....++++.++    + .|..|..|+.|..|+  +++... +.. . ..... .+++.+++.+.++... ..+..++
T Consensus        30 ~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~-~~~~~~~~~~l~s~s~D~~i~lWd  108 (321)
T 3ow8_A           30 AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVV-SVDISHTLPIAASSSLDAHIRLWD  108 (321)
T ss_dssp             SSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEE-EEEECSSSSEEEEEETTSEEEEEE
T ss_pred             cCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEE-EEEECCCCCEEEEEeCCCcEEEEE
Confidence            33345567777653    3 466677899888888  444332 211 1 12334 7888899987766544 4466777


Q ss_pred             -CCC--cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeC-CccC
Q 017371          145 -EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-GFYF  220 (372)
Q Consensus       145 -~~g--~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~-~~~~  220 (372)
                       .++  ...+...     ...+..+++.++|+..++-.                 ..+.|..+|..+++...... ....
T Consensus       109 ~~~~~~~~~~~~~-----~~~~~~~~~spdg~~l~~g~-----------------~dg~v~i~~~~~~~~~~~~~~~~~~  166 (321)
T 3ow8_A          109 LENGKQIKSIDAG-----PVDAWTLAFSPDSQYLATGT-----------------HVGKVNIFGVESGKKEYSLDTRGKF  166 (321)
T ss_dssp             TTTTEEEEEEECC-----TTCCCCEEECTTSSEEEEEC-----------------TTSEEEEEETTTCSEEEEEECSSSC
T ss_pred             CCCCCEEEEEeCC-----CccEEEEEECCCCCEEEEEc-----------------CCCcEEEEEcCCCceeEEecCCCce
Confidence             666  3333211     12456789999998777632                 46788888887766544332 2334


Q ss_pred             cceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 017371          221 ANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       221 ~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~  284 (372)
                      ...++++||++++..+. .++.|..+++...+  ....+. ........++++++|++.++...
T Consensus       167 v~~~~~spdg~~lasg~-~dg~i~iwd~~~~~--~~~~~~-~h~~~v~~l~~spd~~~l~s~s~  226 (321)
T 3ow8_A          167 ILSIAYSPDGKYLASGA-IDGIINIFDIATGK--LLHTLE-GHAMPIRSLTFSPDSQLLVTASD  226 (321)
T ss_dssp             EEEEEECTTSSEEEEEE-TTSCEEEEETTTTE--EEEEEC-CCSSCCCEEEECTTSCEEEEECT
T ss_pred             EEEEEECCCCCEEEEEc-CCCeEEEEECCCCc--EEEEEc-ccCCceeEEEEcCCCCEEEEEcC
Confidence            56789999999666554 45678888876432  112222 22234578999999987776654

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=98.73  E-value=1.6e-05  Score=72.91  Aligned_cols=224  Identities=12%  Similarity=0.057  Sum_probs=138.3

Q ss_pred             CccEEEcCCCcE-EEEecCCeEEEEe--CC--ceE---EEEecCCCcccCeEEcCCCCEEEEeCCCcEEEEc-CCC--cE
Q 017371           81 PEDASMDKNGVI-YTATRDGWIKRLQ--DG--TWV---NWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG--VE  149 (372)
Q Consensus        81 p~~i~~d~~G~l-~v~~~~g~i~~~~--~g--~~~---~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~-~~g--~~  149 (372)
                      ..++++.++|.+ .++..++.|..|+  .+  ..+   .+....+... .+.+.+++.++.+..+..+..++ .++  ..
T Consensus       100 v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~  178 (340)
T 1got_B          100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLS-CCRFLDDNQIVTSSGDTTCALWDIETGQQTT  178 (340)
T ss_dssp             EEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEE-EEEEEETTEEEEEETTSCEEEEETTTTEEEE
T ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEE-EEEECCCCcEEEEECCCcEEEEECCCCcEEE
Confidence            456788888854 4556888888888  22  122   1222223334 67787888877776666688888 666  33


Q ss_pred             EEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCc-cCcceEEEec
Q 017371          150 NFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF-YFANGVALSR  228 (372)
Q Consensus       150 ~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~-~~~~gi~~~~  228 (372)
                      .+.    +. ...+..+++.++|+++++-+                 .++.|..+|..+++......+. ...+.++++|
T Consensus       179 ~~~----~h-~~~v~~~~~~~~~~~l~sg~-----------------~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p  236 (340)
T 1got_B          179 TFT----GH-TGDVMSLSLAPDTRLFVSGA-----------------CDASAKLWDVREGMCRQTFTGHESDINAICFFP  236 (340)
T ss_dssp             EEC----CC-SSCEEEEEECTTSSEEEEEE-----------------TTSCEEEEETTTCSEEEEECCCSSCEEEEEECT
T ss_pred             EEc----CC-CCceEEEEECCCCCEEEEEe-----------------CCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcC
Confidence            221    11 12467889999999887632                 5678888998777655444432 3356899999


Q ss_pred             CCCEEEEEeCCCCeEEEEEccCCCCcceeeecc-CCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcC
Q 017371          229 DEDYVVVCESWKFRCRKYWLKGERKGKLETFAE-NLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYP  307 (372)
Q Consensus       229 dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~-~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p  307 (372)
                      +++.++.+ +.++.|..+++...+  ....+.. ........+++.++|++.++...                       
T Consensus       237 ~~~~l~s~-s~d~~v~iwd~~~~~--~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-----------------------  290 (340)
T 1got_B          237 NGNAFATG-SDDATCRLFDLRADQ--ELMTYSHDNIICGITSVSFSKSGRLLLAGYD-----------------------  290 (340)
T ss_dssp             TSSEEEEE-ETTSCEEEEETTTTE--EEEEECCTTCCSCEEEEEECTTSSEEEEEET-----------------------
T ss_pred             CCCEEEEE-cCCCcEEEEECCCCc--EEEEEccCCcccceEEEEECCCCCEEEEECC-----------------------
Confidence            99865554 456678888875431  1122211 11112456889999998887766                       


Q ss_pred             ccccccccCCCceEEEEEC-CCCcEEEEEECCCCCeeccceeeEEE-CC-EEEEEeCCCCeEEEE
Q 017371          308 KLFSQFITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQV-DN-HLYVISLTSNFIGKV  369 (372)
Q Consensus       308 ~~~~~~~~~~~~~~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~-~g-~L~igs~~~~~i~~~  369 (372)
                                 .+.|..+| .+++.+..+....+    .++++... ++ .|..|+. ...|.++
T Consensus       291 -----------d~~i~vwd~~~~~~~~~~~~h~~----~v~~~~~s~dg~~l~s~s~-D~~i~iW  339 (340)
T 1got_B          291 -----------DFNCNVWDALKADRAGVLAGHDN----RVSCLGVTDDGMAVATGSW-DSFLKIW  339 (340)
T ss_dssp             -----------TSEEEEEETTTCCEEEEEECCSS----CEEEEEECTTSSCEEEEET-TSCEEEE
T ss_pred             -----------CCeEEEEEcccCcEeeEeecCCC----cEEEEEEcCCCCEEEEEcC-CccEEec
Confidence                       46777777 45777777765443    46777775 34 4555553 3445443

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.71  E-value=4.8e-07  Score=84.38  Aligned_cols=86  Identities=5%  Similarity=-0.147  Sum_probs=58.1

Q ss_pred             CcEEEEec-CC----eEEEEe--CCceEEEEecCCCcccCeEEcCCC-CEEEEeC----------CCcEEEEc-CCC--c
Q 017371           90 GVIYTATR-DG----WIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEG-HLIICDN----------ANGLHKVS-EDG--V  148 (372)
Q Consensus        90 G~l~v~~~-~g----~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG-~l~v~~~----------~~gv~~~~-~~g--~  148 (372)
                      ..+|+.+. ++    .|..+|  ++++..-...+..|  ++++++|| .+||++.          ..-|..+| .++  .
T Consensus        32 ~~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv  109 (368)
T 1mda_H           32 RRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPI  109 (368)
T ss_dssp             TEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEE
T ss_pred             CeEEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEE
Confidence            46888873 33    788999  56654444455556  89999998 6999973          23488899 555  3


Q ss_pred             EEEeeecCC-c---ccccccceEEccCC-cEEEEeC
Q 017371          149 ENFLSYVNG-S---KLRFANDVVEASDG-SLYFTVS  179 (372)
Q Consensus       149 ~~l~~~~~~-~---~~~~~~~l~~d~dG-~i~vtd~  179 (372)
                      ..+..  ++ .   ....|.++++++|| .+|+++.
T Consensus       110 ~~I~v--~~~~~~~~g~~P~~ia~SpDGk~lyVan~  143 (368)
T 1mda_H          110 ADIEL--PDAPRFSVGPRVHIIGNCASSACLLFFLF  143 (368)
T ss_dssp             EEEEE--TTSCSCCBSCCTTSEEECTTSSCEEEEEC
T ss_pred             EEEEC--CCccccccCCCcceEEEcCCCCEEEEEcc
Confidence            33321  21 1   12468899999999 6999874

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.71  E-value=6.6e-07  Score=82.82  Aligned_cols=184  Identities=14%  Similarity=0.114  Sum_probs=108.1

Q ss_pred             ccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCC--CeEEEE-eCC------ccCcceEEEec--C
Q 017371          161 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS--NITTLV-ADG------FYFANGVALSR--D  229 (372)
Q Consensus       161 ~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t--~~~~~~-~~~------~~~~~gi~~~~--d  229 (372)
                      ..+.+|+++++|.+|++... +|.--    ..+.....|+|+++|+++  .+.+.+ ..+      ...|.|+.+.+  |
T Consensus        50 ~G~EDi~~~~~G~~~~s~~~-~~pg~----~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~d  124 (355)
T 3sre_A           50 NGSEDLEILPNGLAFISSGL-KYPGI----MSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDD  124 (355)
T ss_dssp             SCCCEEEECTTSEEEEEECC-C---------------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTT
T ss_pred             CCcceeEEcCCCeEEEEecc-ccCCC----cccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCC
Confidence            46789999999999998521 11100    001113578999999873  344432 222      23688999876  3


Q ss_pred             CC-EEEEEeCC--CCeEE--EEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHH
Q 017371          230 ED-YVVVCESW--KFRCR--KYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLA  304 (372)
Q Consensus       230 g~-~l~v~~~~--~~~i~--~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~  304 (372)
                      ++ +||+++..  +.+|.  +++.++....-...+.......|+.+++|++|++|+++..-        ...|..+. ..
T Consensus       125 g~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~--------ftd~~~~~-~e  195 (355)
T 3sre_A          125 NTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHY--------FIDPYLKS-WE  195 (355)
T ss_dssp             CCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCS--------CSSHHHHH-HH
T ss_pred             CcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcE--------eCCccccc-ch
Confidence            43 79999876  34544  45444332222222222233468999999999999998631        11121111 11


Q ss_pred             hcCccccccccCCCceEEEEECCCCcEEEEEECCCCCeeccceeeEEE-C-CEEEEEeCCCCeEEEEeCC
Q 017371          305 AYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV-D-NHLYVISLTSNFIGKVQLS  372 (372)
Q Consensus       305 ~~p~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~-~-g~L~igs~~~~~i~~~~~~  372 (372)
                      .+        ...+.+.|+++++. +......   +  +..+.+++.. + .+||+++...+.|.+++++
T Consensus       196 ~~--------~~~~~g~vyr~d~~-~~~~~~~---~--l~~pNGia~spDg~~lYvadt~~~~I~~~~~~  251 (355)
T 3sre_A          196 MH--------LGLAWSFVTYYSPN-DVRVVAE---G--FDFANGINISPDGKYVYIAELLAHKIHVYEKH  251 (355)
T ss_dssp             HH--------TTCCCEEEEEECTT-CCEEEEE---E--ESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             hh--------ccCCccEEEEEECC-eEEEeec---C--CcccCcceECCCCCEEEEEeCCCCeEEEEEEC
Confidence            00        12346899999984 4332221   2  4456677775 3 5899999999999998863

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=98.70  E-value=3.2e-06  Score=79.04  Aligned_cols=178  Identities=11%  Similarity=0.066  Sum_probs=111.5

Q ss_pred             CCCccEEEcCCCc-EEEEecCCeEEEEe--CCceEE-EEecCCC---------------cccCeEEcCCCCEEEEeCCCc
Q 017371           79 NHPEDASMDKNGV-IYTATRDGWIKRLQ--DGTWVN-WKFIDSQ---------------TLVGLTSTKEGHLIICDNANG  139 (372)
Q Consensus        79 ~~p~~i~~d~~G~-l~v~~~~g~i~~~~--~g~~~~-~~~~~~~---------------p~~gl~~d~dG~l~v~~~~~g  139 (372)
                      ....++++.++|. |++++.+|.|..|+  +++... +......               .. .+.+.+++.++++.....
T Consensus       150 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~  228 (425)
T 1r5m_A          150 APIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGV-DVEWVDDDKFVIPGPKGA  228 (425)
T ss_dssp             SCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBS-CCEEEETTEEEEECGGGC
T ss_pred             ccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceee-EEEEcCCCEEEEEcCCCe
Confidence            3566789988885 66667899999999  454332 2221111               55 888988888777765556


Q ss_pred             EEEEc-CCC--cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeC
Q 017371          140 LHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD  216 (372)
Q Consensus       140 v~~~~-~~g--~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~  216 (372)
                      +..++ .++  ...+...     ...+..+++.++|+.+++-.                 .++.|..+|..+++......
T Consensus       229 i~~~d~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~-----------------~d~~i~i~d~~~~~~~~~~~  286 (425)
T 1r5m_A          229 IFVYQITEKTPTGKLIGH-----HGPISVLEFNDTNKLLLSAS-----------------DDGTLRIWHGGNGNSQNCFY  286 (425)
T ss_dssp             EEEEETTCSSCSEEECCC-----SSCEEEEEEETTTTEEEEEE-----------------TTSCEEEECSSSBSCSEEEC
T ss_pred             EEEEEcCCCceeeeeccC-----CCceEEEEECCCCCEEEEEc-----------------CCCEEEEEECCCCccceEec
Confidence            88888 555  3333211     12456889999998666532                 46778888877665433333


Q ss_pred             C-ccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 017371          217 G-FYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       217 ~-~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~  284 (372)
                      . -.....+++++++  ++++...++.|..|++...+  ....+. ........+++.++|++.++...
T Consensus       287 ~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~--~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~  350 (425)
T 1r5m_A          287 GHSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQNT--LLALSI-VDGVPIFAGRISQDGQKYAVAFM  350 (425)
T ss_dssp             CCSSCEEEEEEETTT--EEEEEETTSEEEEEETTTTE--EEEEEE-CTTCCEEEEEECTTSSEEEEEET
T ss_pred             CCCccEEEEEECCCC--EEEEEeCCCcEEEEECCCCc--EeEecc-cCCccEEEEEEcCCCCEEEEEEC
Confidence            2 2334678899998  44444556789888876432  112222 22334667889999987666554

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=98.70  E-value=3.6e-05  Score=69.33  Aligned_cols=151  Identities=10%  Similarity=0.088  Sum_probs=95.9

Q ss_pred             CCCCCCccEEEcCCCc-EEEEecCCeEEEEe--CCce-EEEEecCCCcccCeEEcCCCCEEEEeCC-CcEEEEc-CCC--
Q 017371           76 GSVNHPEDASMDKNGV-IYTATRDGWIKRLQ--DGTW-VNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG--  147 (372)
Q Consensus        76 g~~~~p~~i~~d~~G~-l~v~~~~g~i~~~~--~g~~-~~~~~~~~~p~~gl~~d~dG~l~v~~~~-~gv~~~~-~~g--  147 (372)
                      +.-....++++.++|. |..+..+|.|..|+  +++. ..+........ .+++.++|+++++... ..+..++ .++  
T Consensus        11 ~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~   89 (304)
T 2ynn_A           11 NRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVR-AGKFIARKNWIIVGSDDFRIRVFNYNTGEK   89 (304)
T ss_dssp             EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE-EEEEEGGGTEEEEEETTSEEEEEETTTCCE
T ss_pred             CCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEE-EEEEeCCCCEEEEECCCCEEEEEECCCCcE
Confidence            3334677899999996 45556899999999  4443 33332223334 8889999986666444 4477777 566  


Q ss_pred             cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCC-eEEEEeCCc-cCcceEE
Q 017371          148 VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN-ITTLVADGF-YFANGVA  225 (372)
Q Consensus       148 ~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~-~~~~~~~~~-~~~~gi~  225 (372)
                      ...+...     ...+..+++.+++.+.++-+                 .++.|..+|..++ .......+. .....++
T Consensus        90 ~~~~~~h-----~~~v~~~~~~~~~~~l~sgs-----------------~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~  147 (304)
T 2ynn_A           90 VVDFEAH-----PDYIRSIAVHPTKPYVLSGS-----------------DDLTVKLWNWENNWALEQTFEGHEHFVMCVA  147 (304)
T ss_dssp             EEEEECC-----SSCEEEEEECSSSSEEEEEE-----------------TTSCEEEEEGGGTTEEEEEECCCCSCEEEEE
T ss_pred             EEEEeCC-----CCcEEEEEEcCCCCEEEEEC-----------------CCCeEEEEECCCCcchhhhhcccCCcEEEEE
Confidence            3333211     13567899999998777632                 5677888887655 333333332 3346788


Q ss_pred             Eec-CCCEEEEEeCCCCeEEEEEccC
Q 017371          226 LSR-DEDYVVVCESWKFRCRKYWLKG  250 (372)
Q Consensus       226 ~~~-dg~~l~v~~~~~~~i~~~~~~g  250 (372)
                      ++| +++ ++++...++.|..+++..
T Consensus       148 ~~p~~~~-~l~sgs~D~~v~iwd~~~  172 (304)
T 2ynn_A          148 FNPKDPS-TFASGCLDRTVKVWSLGQ  172 (304)
T ss_dssp             ECTTCTT-EEEEEETTSEEEEEETTC
T ss_pred             ECCCCCC-EEEEEeCCCeEEEEECCC
Confidence            998 455 555555677788888754

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=98.68  E-value=2.5e-05  Score=73.67  Aligned_cols=149  Identities=13%  Similarity=0.123  Sum_probs=95.8

Q ss_pred             CCCCccEEEcCCCcEE-EEecCCeEEEEe--CCceEE-EEecCCCcccCeEEcCCCCEEEEeCC-CcEEEEc-CCC--cE
Q 017371           78 VNHPEDASMDKNGVIY-TATRDGWIKRLQ--DGTWVN-WKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG--VE  149 (372)
Q Consensus        78 ~~~p~~i~~d~~G~l~-v~~~~g~i~~~~--~g~~~~-~~~~~~~p~~gl~~d~dG~l~v~~~~-~gv~~~~-~~g--~~  149 (372)
                      -....++++.+++.+. .+..+|.|..|+  +++... +....+... .+++.++|+++++... .-+..++ .++  ..
T Consensus       108 ~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~-~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~  186 (410)
T 1vyh_C          108 RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQ-DISFDHSGKLLASCSADMTIKLWDFQGFECIR  186 (410)
T ss_dssp             SSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEE-EEEECTTSSEEEEEETTSCCCEEETTSSCEEE
T ss_pred             CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEE-EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE
Confidence            3456688999988654 555899999999  555433 332233445 8999999987766544 3466676 443  22


Q ss_pred             EEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCC-ccCcceEEEec
Q 017371          150 NFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSR  228 (372)
Q Consensus       150 ~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~-~~~~~gi~~~~  228 (372)
                      .+    .+. ...+..+++.++|+..++-+                 .++.|..+|..+++......+ ......+++++
T Consensus       187 ~~----~~h-~~~V~~v~~~p~~~~l~s~s-----------------~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~  244 (410)
T 1vyh_C          187 TM----HGH-DHNVSSVSIMPNGDHIVSAS-----------------RDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ  244 (410)
T ss_dssp             CC----CCC-SSCEEEEEECSSSSEEEEEE-----------------TTSEEEEEETTTCCEEEEEECCSSCEEEEEECT
T ss_pred             EE----cCC-CCCEEEEEEeCCCCEEEEEe-----------------CCCeEEEEECCCCcEEEEEeCCCccEEEEEECC
Confidence            22    111 13567899999998777532                 577899999887765443332 23345678999


Q ss_pred             CCCEEEEEeCCCCeEEEEEccC
Q 017371          229 DEDYVVVCESWKFRCRKYWLKG  250 (372)
Q Consensus       229 dg~~l~v~~~~~~~i~~~~~~g  250 (372)
                      +++.++.+ ..++.|..+++..
T Consensus       245 ~g~~l~s~-s~D~~v~vwd~~~  265 (410)
T 1vyh_C          245 DGTLIASC-SNDQTVRVWVVAT  265 (410)
T ss_dssp             TSSEEEEE-ETTSCEEEEETTT
T ss_pred             CCCEEEEE-cCCCeEEEEECCC
Confidence            99855444 4566788787754

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=98.67  E-value=9e-05  Score=66.62  Aligned_cols=230  Identities=15%  Similarity=0.095  Sum_probs=134.4

Q ss_pred             CCCccEEEcCCCc-EEEEecCCeEEEEe--CCce-EEEEecCCCcccCeEEcCCCCEEEEeCC-CcEEEEc-CCC--cEE
Q 017371           79 NHPEDASMDKNGV-IYTATRDGWIKRLQ--DGTW-VNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG--VEN  150 (372)
Q Consensus        79 ~~p~~i~~d~~G~-l~v~~~~g~i~~~~--~g~~-~~~~~~~~~p~~gl~~d~dG~l~v~~~~-~gv~~~~-~~g--~~~  150 (372)
                      ....++++.++|. |..+..+|.|..|+  +++. ..+........ .+++.++++++++... ..+..++ .++  ...
T Consensus        66 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  144 (312)
T 4ery_A           66 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF-CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT  144 (312)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE-EEEECSSSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             CceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEE-EEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEE
Confidence            4567789999885 45566899999999  4543 33333334445 8899999987666444 4577788 555  333


Q ss_pred             EeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEe-CC-ccCcceEEEec
Q 017371          151 FLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DG-FYFANGVALSR  228 (372)
Q Consensus       151 l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~-~~-~~~~~gi~~~~  228 (372)
                      +...     ...+..+++.++|++.++-+                 .++.|..+|..+++..... .. ......++++|
T Consensus       145 ~~~~-----~~~v~~~~~~~~~~~l~~~~-----------------~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  202 (312)
T 4ery_A          145 LPAH-----SDPVSAVHFNRDGSLIVSSS-----------------YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP  202 (312)
T ss_dssp             ECCC-----SSCEEEEEECTTSSEEEEEE-----------------TTSCEEEEETTTCCEEEEECCSSCCCEEEEEECT
T ss_pred             ecCC-----CCcEEEEEEcCCCCEEEEEe-----------------CCCcEEEEECCCCceeeEEeccCCCceEEEEECC
Confidence            3111     12456789999998776532                 4678889998776643322 22 22235688999


Q ss_pred             CCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCC-CCCceeEE-cCCCCEEEEEecCchhHHHHhhcchhHHHHHHhc
Q 017371          229 DEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLP-GAPDNINL-APDGTFWIAIIKLDARRMKILNSSKLIKHVLAAY  306 (372)
Q Consensus       229 dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~-g~p~~i~~-d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~  306 (372)
                      ++++++.+. .++.|..|++...+  ....+..... ...-.... .++|.+.++...                      
T Consensus       203 ~~~~l~~~~-~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~----------------------  257 (312)
T 4ery_A          203 NGKYILAAT-LDNTLKLWDYSKGK--CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE----------------------  257 (312)
T ss_dssp             TSSEEEEEE-TTTEEEEEETTTTE--EEEEECSSCCSSSCCCEEEECSSSCEEEECCT----------------------
T ss_pred             CCCEEEEEc-CCCeEEEEECCCCc--EEEEEEecCCceEEEEEEEEeCCCcEEEEECC----------------------
Confidence            999766654 46678888876432  1122221111 01111222 244555444433                      


Q ss_pred             CccccccccCCCceEEEEECC-CCcEEEEEECCCCCeeccceeeEEE--CCEEEEEeC-CCCeEEEEeCC
Q 017371          307 PKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQV--DNHLYVISL-TSNFIGKVQLS  372 (372)
Q Consensus       307 p~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~--~g~L~igs~-~~~~i~~~~~~  372 (372)
                                  .+.|..+|. +++.+..+....+    .+..+...  +..|..++. ....|..++.|
T Consensus       258 ------------dg~i~vwd~~~~~~~~~~~~h~~----~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          258 ------------DNLVYIWNLQTKEIVQKLQGHTD----VVISTACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             ------------TSCEEEEETTTCCEEEEECCCSS----CEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             ------------CCEEEEEECCCchhhhhhhccCC----cEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence                        456666773 4677777754433    35666665  345666665 34556666543

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=98.66  E-value=2.2e-06  Score=87.08  Aligned_cols=198  Identities=12%  Similarity=0.054  Sum_probs=111.1

Q ss_pred             CccEEEcCCCc-EEEEecCCeEEEEe--CC---ceEEEEecCCCcccCeEEcCCCCEEEEeCCCcEEEEc-CCC-cEEEe
Q 017371           81 PEDASMDKNGV-IYTATRDGWIKRLQ--DG---TWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENFL  152 (372)
Q Consensus        81 p~~i~~d~~G~-l~v~~~~g~i~~~~--~g---~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~-~~g-~~~l~  152 (372)
                      ..++++.+||. |+++. ++.|+.++  ++   +.+.+....+... .+++.|||+..+......|+.++ .+| ...+.
T Consensus       111 v~~~~~SpDg~~l~~~~-~~~i~~~d~~~~~~~~~~~l~~~~~~~~-~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~  188 (741)
T 2ecf_A          111 IVDYQWSPDAQRLLFPL-GGELYLYDLKQEGKAAVRQLTHGEGFAT-DAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLT  188 (741)
T ss_dssp             SCCCEECTTSSEEEEEE-TTEEEEEESSSCSTTSCCBCCCSSSCEE-EEEECTTSSEEEEEETTEEEEEETTTTEEEECC
T ss_pred             cceeEECCCCCEEEEEe-CCcEEEEECCCCCcceEEEcccCCcccc-cccCCCCCCEEEEEeCCcEEEEecCCCCEEEec
Confidence            46789999996 44444 48899999  55   5554444334556 89999999844443345688888 555 43332


Q ss_pred             eecCCc------------ccccccceEEccCCc-EEEEeCC-CCCCC-------------cccccc-cccccCCCeEEEE
Q 017371          153 SYVNGS------------KLRFANDVVEASDGS-LYFTVSS-SKYLP-------------HEYCLD-ILEGKPHGQLLKY  204 (372)
Q Consensus       153 ~~~~~~------------~~~~~~~l~~d~dG~-i~vtd~~-~~~~~-------------~~~~~~-~~~~~~~g~v~~~  204 (372)
                      ......            .+..+.++++.+||+ |+++... .....             ....+. ..+......|+.+
T Consensus       189 ~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~  268 (741)
T 2ecf_A          189 ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVI  268 (741)
T ss_dssp             CCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEE
T ss_pred             cCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEE
Confidence            211100            011246799999996 6655221 00000             000000 0000112378899


Q ss_pred             eCCC-CeEEEEeCC---ccCcceEEEecCCCEEEEEeC----CCCeEEEEEccCCCCcceeeeccCCCC---CCceeEEc
Q 017371          205 DPSS-NITTLVADG---FYFANGVALSRDEDYVVVCES----WKFRCRKYWLKGERKGKLETFAENLPG---APDNINLA  273 (372)
Q Consensus       205 d~~t-~~~~~~~~~---~~~~~gi~~~~dg~~l~v~~~----~~~~i~~~~~~g~~~~~~~~~~~~~~g---~p~~i~~d  273 (372)
                      |.++ ++...+...   ......++| |||+.|+++..    ....|+.+++.+.+...  .+.....+   ....+++.
T Consensus       269 d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~--~~~~~~~~~~~~~~~~~~s  345 (741)
T 2ecf_A          269 SPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRV--LAHETSPTWVPLHNSLRFL  345 (741)
T ss_dssp             CSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEE--EEEEECSSCCCCCSCCEEC
T ss_pred             ECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEE--EEEcCCCCcCCcCCceEEC
Confidence            9888 776655422   223457889 99998887653    23468888876543221  11111111   23578899


Q ss_pred             CCCCEEEEEe
Q 017371          274 PDGTFWIAII  283 (372)
Q Consensus       274 ~~G~lwva~~  283 (372)
                      +||+++++..
T Consensus       346 pdg~~~~~~~  355 (741)
T 2ecf_A          346 DDGSILWSSE  355 (741)
T ss_dssp             TTSCEEEEEC
T ss_pred             CCCeEEEEec
Confidence            9998555443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=98.65  E-value=2.1e-05  Score=80.49  Aligned_cols=229  Identities=9%  Similarity=0.055  Sum_probs=136.7

Q ss_pred             CCCCccEEEcCCCc-EEEEecCCeEEEEe--CCce-EEEEecCCCcccCeEEcCCCCEEEEeCC-CcEEEEc-CCC--cE
Q 017371           78 VNHPEDASMDKNGV-IYTATRDGWIKRLQ--DGTW-VNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG--VE  149 (372)
Q Consensus        78 ~~~p~~i~~d~~G~-l~v~~~~g~i~~~~--~g~~-~~~~~~~~~p~~gl~~d~dG~l~v~~~~-~gv~~~~-~~g--~~  149 (372)
                      -....++++.++|. |.++..+|.|..|+  +++. ..+....+... ++++.++|+++++... ..+..++ .++  ..
T Consensus        13 ~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~   91 (814)
T 3mkq_A           13 SDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVR-AGKFIARKNWIIVGSDDFRIRVFNYNTGEKVV   91 (814)
T ss_dssp             CSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE-EEEEEGGGTEEEEEETTSEEEEEETTTCCEEE
T ss_pred             CCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEE-EEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence            34678899999985 55666899999999  5543 33333334445 9999999986555444 4477777 566  33


Q ss_pred             EEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCC-eEEEEeCC-ccCcceEEEe
Q 017371          150 NFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN-ITTLVADG-FYFANGVALS  227 (372)
Q Consensus       150 ~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~-~~~~~~~~-~~~~~gi~~~  227 (372)
                      .+.. ..    ..+..+++.++|...++-                 ..++.|..+|.+++ .......+ -.....++++
T Consensus        92 ~~~~-~~----~~v~~~~~s~~~~~l~~~-----------------~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~  149 (814)
T 3mkq_A           92 DFEA-HP----DYIRSIAVHPTKPYVLSG-----------------SDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFN  149 (814)
T ss_dssp             EEEC-CS----SCEEEEEECSSSSEEEEE-----------------ETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEE
T ss_pred             EEec-CC----CCEEEEEEeCCCCEEEEE-----------------cCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEE
Confidence            3321 11    246789999999755542                 24677888887655 33333332 2334678899


Q ss_pred             c-CCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcC--CCCEEEEEecCchhHHHHhhcchhHHHHHH
Q 017371          228 R-DEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAP--DGTFWIAIIKLDARRMKILNSSKLIKHVLA  304 (372)
Q Consensus       228 ~-dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~--~G~lwva~~~~~~~~~~~~~~~~~~r~~~~  304 (372)
                      | +++ .+++.+.++.|..+++.+....  ..+..........++..+  +|++.++...                    
T Consensus       150 p~~~~-~l~~~~~dg~v~vwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~--------------------  206 (814)
T 3mkq_A          150 PKDPS-TFASGCLDRTVKVWSLGQSTPN--FTLTTGQERGVNYVDYYPLPDKPYMITASD--------------------  206 (814)
T ss_dssp             TTEEE-EEEEEETTSEEEEEETTCSSCS--EEEECCCTTCCCEEEECCSTTCCEEEEECT--------------------
T ss_pred             cCCCC-EEEEEeCCCeEEEEECCCCcce--eEEecCCCCCEEEEEEEECCCCCEEEEEeC--------------------
Confidence            9 666 4445555678888887653222  122222223456677877  8877666654                    


Q ss_pred             hcCccccccccCCCceEEEEEC-CCCcEEEEEECCCCCeeccceeeEEE-CC-EEEEEeCCCCeEEEEeC
Q 017371          305 AYPKLFSQFITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQV-DN-HLYVISLTSNFIGKVQL  371 (372)
Q Consensus       305 ~~p~~~~~~~~~~~~~~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~-~g-~L~igs~~~~~i~~~~~  371 (372)
                                    .+.|..++ .+++.+..+....+    .++++... ++ .|..++ ....|.++++
T Consensus       207 --------------dg~i~~~d~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~-~dg~v~vwd~  257 (814)
T 3mkq_A          207 --------------DLTIKIWDYQTKSCVATLEGHMS----NVSFAVFHPTLPIIISGS-EDGTLKIWNS  257 (814)
T ss_dssp             --------------TSEEEEEETTTTEEEEEEECCSS----CEEEEEECSSSSEEEEEE-TTSCEEEEET
T ss_pred             --------------CCEEEEEECCCCcEEEEEcCCCC----CEEEEEEcCCCCEEEEEe-CCCeEEEEEC
Confidence                          35666666 34666666654333    35555554 33 344444 3345555553

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=98.65  E-value=4.8e-06  Score=75.51  Aligned_cols=210  Identities=14%  Similarity=0.097  Sum_probs=130.8

Q ss_pred             CccEEEcCCCcEEEEe-c-------------CCeEEEEe-CCc-eEEEEecCCCcccCeEEcCC-CCEEEEe---CC-Cc
Q 017371           81 PEDASMDKNGVIYTAT-R-------------DGWIKRLQ-DGT-WVNWKFIDSQTLVGLTSTKE-GHLIICD---NA-NG  139 (372)
Q Consensus        81 p~~i~~d~~G~l~v~~-~-------------~g~i~~~~-~g~-~~~~~~~~~~p~~gl~~d~d-G~l~v~~---~~-~g  139 (372)
                      +..|.++ ++.||..+ .             .+.|++++ +|. .+.+...    . +..+.++ +.||.++   .. ..
T Consensus        57 ~~~i~~~-g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~----~-~~~~s~~g~~Iy~~~~~~~~~~~  130 (302)
T 3s25_A           57 AMYINAD-KNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPD----P-CIYASLIGNYIYYLHYDTQTATS  130 (302)
T ss_dssp             EEEEEEC-SSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECS----C-EEEEEEETTEEEEEEESSSSCEE
T ss_pred             eeeEEEc-CCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecC----C-ccEEEEeCCEEEEEeecCCCCce
Confidence            3445554 45777775 3             25789999 554 3333321    1 3334434 4688887   22 45


Q ss_pred             EEEEcCCC--cEEEeeecCCcccccccceEEccCC-cEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeC
Q 017371          140 LHKVSEDG--VENFLSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD  216 (372)
Q Consensus       140 v~~~~~~g--~~~l~~~~~~~~~~~~~~l~~d~dG-~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~  216 (372)
                      |++++.+|  .+.+... ..        .+++++| +||+++.                 ....|++++.+++..+.+..
T Consensus       131 Iy~~~~dGs~~~~lt~~-~~--------~~~~~~g~~iy~t~~-----------------g~~~Iy~~~l~g~~~~~l~~  184 (302)
T 3s25_A          131 LYRIRIDGEEKKKIKNH-YL--------FTCNTSDRYFYYNNP-----------------KNGQLYRYDTASQSEALFYD  184 (302)
T ss_dssp             EEEEETTSCCCEEEESS-CC--------CCSEEETTEEEEECT-----------------TTCCEEEEETTTTEEEEEEC
T ss_pred             EEEEECCCCCeEEEeCC-Cc--------eEeeEECCEEEEEeC-----------------CCceEEEEECCCCCEEEEeC
Confidence            88888555  5555432 11        2334444 7998854                 35679999998777777655


Q ss_pred             CccCcceEEEecCCCEEEEEeCCC-CeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCC-CEEEEEecCchhHHHHhh
Q 017371          217 GFYFANGVALSRDEDYVVVCESWK-FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDG-TFWIAIIKLDARRMKILN  294 (372)
Q Consensus       217 ~~~~~~gi~~~~dg~~l~v~~~~~-~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G-~lwva~~~~~~~~~~~~~  294 (372)
                      +   +....++|+++++|+++... .+|++.+++|..   ...+.+..  .|   .+|++| .||.+....         
T Consensus       185 ~---~~~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~---~~~Lt~~~--~~---~~~~~g~~Iy~~~~~~---------  244 (302)
T 3s25_A          185 C---NCYKPVVLDDTNVYYMDVNRDNAIVHVNINNPN---PVVLTEAN--IE---HYNVYGSLIFYQRGGD---------  244 (302)
T ss_dssp             S---CEEEEEEEETTEEEEEEGGGTTEEEEECSSSCC---CEECSCSC--EE---EEEEETTEEEEEECSS---------
T ss_pred             C---CccceeeecCCEEEEEEcCCCcEEEEEECCCCC---eEEEeCCC--cc---eEEECCCEEEEEECCC---------
Confidence            3   22345679999999998754 689999998853   23333221  12   355556 355443321         


Q ss_pred             cchhHHHHHHhcCccccccccCCCceEEEEECCCCcEEEEEECCCCCeeccceeeEEECCEEEEEeCCCCeEEEEeCC
Q 017371          295 SSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQLS  372 (372)
Q Consensus       295 ~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~igs~~~~~i~~~~~~  372 (372)
                                              ...|.+++.+|...+.+...  .    ...+...++.||........|.++++|
T Consensus       245 ------------------------~~~i~~~~~DG~~r~~l~~~--~----~~~i~i~~d~Iy~td~~~~~i~~~~~d  292 (302)
T 3s25_A          245 ------------------------NPALCVVKNDGTGFKELAKG--E----FCNINVTSQYVYFTDFVSNKEYCTSTQ  292 (302)
T ss_dssp             ------------------------SCEEEEEETTSCCCEEEEES--C----EEEEEECSSEEEEEETTTCCEEEEESS
T ss_pred             ------------------------CcEEEEEECCCCccEEeeCC--c----cceEEEeCCEEEEEECCCCeEEEEECC
Confidence                                    35788899898765555432  2    235677899999999998889998875

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=98.64  E-value=1.1e-05  Score=75.06  Aligned_cols=186  Identities=15%  Similarity=0.070  Sum_probs=112.8

Q ss_pred             CccEEEcCCCc-EEEEe--cCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCCEEEEeCCCcEEEEc-CCCcEEEeee
Q 017371           81 PEDASMDKNGV-IYTAT--RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDGVENFLSY  154 (372)
Q Consensus        81 p~~i~~d~~G~-l~v~~--~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~-~~g~~~l~~~  154 (372)
                      ...+++.|||. +.+++  .++.|..|+  +++........+... ++++.|||+++++....++.+++ .++.......
T Consensus       136 ~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~-~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~  214 (365)
T 4h5i_A          136 TKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVK-DLHFSTDGKVVAYITGSSLEVISTVTGSCIARKT  214 (365)
T ss_dssp             EEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCC-EEEECTTSSEEEEECSSCEEEEETTTCCEEEEEC
T ss_pred             EEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceE-EEEEccCCceEEeccceeEEEEEeccCcceeeee
Confidence            45689999996 45555  578888888  554433333345566 99999999988776667788888 5562211111


Q ss_pred             cCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEE-----EeCCccCcceEEEecC
Q 017371          155 VNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-----VADGFYFANGVALSRD  229 (372)
Q Consensus       155 ~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~-----~~~~~~~~~gi~~~~d  229 (372)
                      ..+ ....+..+++.++|+..++-+.             .......++.+|...+....     +.......+.++|+||
T Consensus       215 ~~~-~~~~v~~v~fspdg~~l~~~s~-------------d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spd  280 (365)
T 4h5i_A          215 DFD-KNWSLSKINFIADDTVLIAASL-------------KKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMK  280 (365)
T ss_dssp             CCC-TTEEEEEEEEEETTEEEEEEEE-------------SSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTT
T ss_pred             cCC-CCCCEEEEEEcCCCCEEEEEec-------------CCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCC
Confidence            111 1234678899999987775321             01111245556654443322     2222333457899999


Q ss_pred             CCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 017371          230 EDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       230 g~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~  284 (372)
                      |++|..+ +.++.|..+++...+  ....+.....+....+++.+||++.++...
T Consensus       281 g~~lasg-s~D~~V~iwd~~~~~--~~~~~~~gH~~~V~~v~fSpdg~~laS~S~  332 (365)
T 4h5i_A          281 GELAVLA-SNDNSIALVKLKDLS--MSKIFKQAHSFAITEVTISPDSTYVASVSA  332 (365)
T ss_dssp             SCEEEEE-ETTSCEEEEETTTTE--EEEEETTSSSSCEEEEEECTTSCEEEEEET
T ss_pred             CCceEEE-cCCCEEEEEECCCCc--EEEEecCcccCCEEEEEECCCCCEEEEEeC
Confidence            9955544 456678888875431  122333233344678999999998877655

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=98.64  E-value=0.00015  Score=67.47  Aligned_cols=259  Identities=10%  Similarity=0.025  Sum_probs=138.4

Q ss_pred             CCCCCCCccEEEcCCC-cEEEEecCCeEEEEe--CCce-EEEEecCCCcccCeEEcCCCCEEEEeCC-CcEEEEc-CC--
Q 017371           75 EGSVNHPEDASMDKNG-VIYTATRDGWIKRLQ--DGTW-VNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-ED--  146 (372)
Q Consensus        75 ~g~~~~p~~i~~d~~G-~l~v~~~~g~i~~~~--~g~~-~~~~~~~~~p~~gl~~d~dG~l~v~~~~-~gv~~~~-~~--  146 (372)
                      .|.-....++++.++| .|..++.||.|..|+  +++. ..+........ .+++.++|++.++... ..+..++ ..  
T Consensus        63 ~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~-~~~~s~~g~~las~~~d~~v~iw~~~~~~  141 (380)
T 3iz6_a           63 QGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVM-ECAFAPNGQSVACGGLDSACSIFNLSSQA  141 (380)
T ss_dssp             CCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCC-CCEECTTSSEEEECCSSSCCEEEECCCCS
T ss_pred             cccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEE-EEEECCCCCEEEEeeCCCcEEEEECCCCc
Confidence            3444456788999888 466677899999999  4543 33333333455 8999999987766443 3344444 21  


Q ss_pred             ---C-c---EEEee-e--cCCccccc--ccce-EEccCCcEEEEeCCCCCCC----------c-cc----------cccc
Q 017371          147 ---G-V---ENFLS-Y--VNGSKLRF--ANDV-VEASDGSLYFTVSSSKYLP----------H-EY----------CLDI  192 (372)
Q Consensus       147 ---g-~---~~l~~-~--~~~~~~~~--~~~l-~~d~dG~i~vtd~~~~~~~----------~-~~----------~~~~  192 (372)
                         + .   ..+.. .  .....+..  ...+ .-..||.|.+-|.......          + ..          ...+
T Consensus       142 ~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l  221 (380)
T 3iz6_a          142 DRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMF  221 (380)
T ss_dssp             SCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEE
T ss_pred             cccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEE
Confidence               1 0   00100 0  00000000  1112 2345677666554321000          0 00          0112


Q ss_pred             ccccCCCeEEEEeCCC-Ce-EEEEeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccC------CC
Q 017371          193 LEGKPHGQLLKYDPSS-NI-TTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAEN------LP  264 (372)
Q Consensus       193 ~~~~~~g~v~~~d~~t-~~-~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~------~~  264 (372)
                      ..+..++.|..+|... ++ ...+...-...+.++++|+++. +++.+.+..|..+++...+  ....+...      ..
T Consensus       222 ~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-l~s~s~D~~i~lwd~~~~~--~~~~~~~~~~~~~~~~  298 (380)
T 3iz6_a          222 ISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQR-FGTGSDDGTCRLFDMRTGH--QLQVYNREPDRNDNEL  298 (380)
T ss_dssp             EEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSE-EEEECSSSCEEEEETTTTE--EEEEECCCCSSSCCSS
T ss_pred             EEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCe-EEEEcCCCeEEEEECCCCc--EEEEeccccccccccc
Confidence            2344567777788642 22 2222222334578999999984 4555567778888876432  11122111      11


Q ss_pred             CCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEECC-CCcEEEEEECCCCCee
Q 017371          265 GAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLM  343 (372)
Q Consensus       265 g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~  343 (372)
                      .....+++.++|++.++...                                  .+.|..+|. .++.+..+........
T Consensus       299 ~~v~~~~~s~~g~~l~~g~~----------------------------------dg~i~vwd~~~~~~~~~~~~~~~~h~  344 (380)
T 3iz6_a          299 PIVTSVAFSISGRLLFAGYS----------------------------------NGDCYVWDTLLAEMVLNLGTLQNSHE  344 (380)
T ss_dssp             CSCSEEEECSSSSEEEEECT----------------------------------TSCEEEEETTTCCEEEEECCSCSSCC
T ss_pred             CceEEEEECCCCCEEEEEEC----------------------------------CCCEEEEECCCCceEEEEecccCCCC
Confidence            13467899999998887765                                  456777774 4666666643222223


Q ss_pred             ccceeeEEE-CCEEEEEeCCCCeEEEEeC
Q 017371          344 SFVTSGLQV-DNHLYVISLTSNFIGKVQL  371 (372)
Q Consensus       344 ~~~t~~~~~-~g~L~igs~~~~~i~~~~~  371 (372)
                      ..++++... +|...+.......|.++++
T Consensus       345 ~~v~~l~~s~dg~~l~sgs~D~~i~iW~~  373 (380)
T 3iz6_a          345 GRISCLGLSSDGSALCTGSWDKNLKIWAF  373 (380)
T ss_dssp             CCCCEEEECSSSSEEEEECTTSCEEEEEC
T ss_pred             CceEEEEECCCCCEEEEeeCCCCEEEEec
Confidence            457777775 4544444445566777665

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=98.63  E-value=6.1e-05  Score=70.50  Aligned_cols=180  Identities=12%  Similarity=0.032  Sum_probs=110.4

Q ss_pred             CCCccEEEcCCCcEEEEecCCeEEEEe--CCceEE-EEecC------------------CCcccCeEEcCCCCEEEEeCC
Q 017371           79 NHPEDASMDKNGVIYTATRDGWIKRLQ--DGTWVN-WKFID------------------SQTLVGLTSTKEGHLIICDNA  137 (372)
Q Consensus        79 ~~p~~i~~d~~G~l~v~~~~g~i~~~~--~g~~~~-~~~~~------------------~~p~~gl~~d~dG~l~v~~~~  137 (372)
                      ....++++.++|.+.++..++.+..|+  +|+... +....                  .... .+++.++|+++++...
T Consensus        65 ~~V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~-~v~~s~dg~~l~s~~~  143 (393)
T 1erj_A           65 SVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIR-SVCFSPDGKFLATGAE  143 (393)
T ss_dssp             SCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEE-EEEECTTSSEEEEEET
T ss_pred             CEEEEEEECCCCCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEE-EEEECCCCCEEEEEcC
Confidence            356789999999876665567787787  554322 21100                  0134 7899999987666444


Q ss_pred             -CcEEEEc-CCC--cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEE
Q 017371          138 -NGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL  213 (372)
Q Consensus       138 -~gv~~~~-~~g--~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~  213 (372)
                       ..+..++ .++  ...+    .+. ...+..+++.++|+..++-+                 .++.|..+|..+++...
T Consensus       144 d~~i~iwd~~~~~~~~~~----~~h-~~~v~~~~~~p~~~~l~s~s-----------------~d~~v~iwd~~~~~~~~  201 (393)
T 1erj_A          144 DRLIRIWDIENRKIVMIL----QGH-EQDIYSLDYFPSGDKLVSGS-----------------GDRTVRIWDLRTGQCSL  201 (393)
T ss_dssp             TSCEEEEETTTTEEEEEE----CCC-SSCEEEEEECTTSSEEEEEE-----------------TTSEEEEEETTTTEEEE
T ss_pred             CCeEEEEECCCCcEEEEE----ccC-CCCEEEEEEcCCCCEEEEec-----------------CCCcEEEEECCCCeeEE
Confidence             4477777 555  2222    111 12467899999998777532                 56789999988887655


Q ss_pred             EeCCccCcceEEEec-CCCEEEEEeCCCCeEEEEEccCCCCcceeeec------cCCCCCCceeEEcCCCCEEEEEec
Q 017371          214 VADGFYFANGVALSR-DEDYVVVCESWKFRCRKYWLKGERKGKLETFA------ENLPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       214 ~~~~~~~~~gi~~~~-dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~------~~~~g~p~~i~~d~~G~lwva~~~  284 (372)
                      ..........+++++ +++.+. +...++.|..+++...+..  ..+.      .........++++++|.+.++...
T Consensus       202 ~~~~~~~v~~~~~~~~~~~~l~-~~s~d~~v~iwd~~~~~~~--~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~  276 (393)
T 1erj_A          202 TLSIEDGVTTVAVSPGDGKYIA-AGSLDRAVRVWDSETGFLV--ERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL  276 (393)
T ss_dssp             EEECSSCEEEEEECSTTCCEEE-EEETTSCEEEEETTTCCEE--EEEC------CCCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEcCCCcEEEEEECCCCCEEE-EEcCCCcEEEEECCCCcEE--EeecccccCCCCCCCCEEEEEECCCCCEEEEEeC
Confidence            444334456788998 777554 4445667888887543211  1111      011223456888999987666543

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=98.63  E-value=1.7e-05  Score=73.64  Aligned_cols=237  Identities=8%  Similarity=-0.044  Sum_probs=142.6

Q ss_pred             CCCccEEEcCC----C----cEEEEecCCeEEEEe--CCc------eEEEEec-----CCCcccCeEEc----CCCCE-E
Q 017371           79 NHPEDASMDKN----G----VIYTATRDGWIKRLQ--DGT------WVNWKFI-----DSQTLVGLTST----KEGHL-I  132 (372)
Q Consensus        79 ~~p~~i~~d~~----G----~l~v~~~~g~i~~~~--~g~------~~~~~~~-----~~~p~~gl~~d----~dG~l-~  132 (372)
                      ....++++.++    |    .|+++..+|.|..|+  +++      ...+...     ..... .+++.    ++|+. +
T Consensus        63 ~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~l  141 (397)
T 1sq9_A           63 SGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFW-ALKWGASNDRLLSHRL  141 (397)
T ss_dssp             TCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEE-EEEEECCC----CEEE
T ss_pred             CcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEE-EEEEeeccCCCCceEE
Confidence            34577888887    7    455566899999988  444      4444332     24455 89999    89976 5


Q ss_pred             EEe-CCCcEEEEc-CC------C--cE-----EEeee--cCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccc
Q 017371          133 ICD-NANGLHKVS-ED------G--VE-----NFLSY--VNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEG  195 (372)
Q Consensus       133 v~~-~~~gv~~~~-~~------g--~~-----~l~~~--~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~  195 (372)
                      ++. ....+..++ ..      +  ..     .+...  ........+..+++.++| ++++-                 
T Consensus       142 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~-----------------  203 (397)
T 1sq9_A          142 VATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATG-----------------  203 (397)
T ss_dssp             EEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEE-----------------
T ss_pred             EEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEE-----------------
Confidence            554 334477777 44      3  33     33210  001112356789999999 55542                 


Q ss_pred             cCCCeEEEEeCCCCeEEEEeCC-------ccCcceEEEecCCCEEEEEeCCC---CeEEEEEccCCCCcceeeeccC---
Q 017371          196 KPHGQLLKYDPSSNITTLVADG-------FYFANGVALSRDEDYVVVCESWK---FRCRKYWLKGERKGKLETFAEN---  262 (372)
Q Consensus       196 ~~~g~v~~~d~~t~~~~~~~~~-------~~~~~gi~~~~dg~~l~v~~~~~---~~i~~~~~~g~~~~~~~~~~~~---  262 (372)
                      ..++.|..+|..+++.......       ......++++++++.++.+. .+   +.|..|++...+  ....+...   
T Consensus       204 ~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~-~d~~~g~i~i~d~~~~~--~~~~~~~~~~~  280 (397)
T 1sq9_A          204 FNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAH-DSNSFGCITLYETEFGE--RIGSLSVPTHS  280 (397)
T ss_dssp             CTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEE-EETTEEEEEEEETTTCC--EEEEECBC---
T ss_pred             eCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEe-cCCCCceEEEEECCCCc--ccceeccCccc
Confidence            2568899999887776554444       34456789999999766654 34   578888876432  12222210   


Q ss_pred             ---------CCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEECC-CCcEE
Q 017371          263 ---------LPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTII  332 (372)
Q Consensus       263 ---------~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~-~g~~~  332 (372)
                               ..+....+++.++|++.++...                                  .+.|..++. +++.+
T Consensus       281 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------------------------------dg~i~iwd~~~~~~~  326 (397)
T 1sq9_A          281 SQASLGEFAHSSWVMSLSFNDSGETLCSAGW----------------------------------DGKLRFWDVKTKERI  326 (397)
T ss_dssp             -----CCBSBSSCEEEEEECSSSSEEEEEET----------------------------------TSEEEEEETTTTEEE
T ss_pred             ccccccccccCCcEEEEEECCCCCEEEEEeC----------------------------------CCeEEEEEcCCCcee
Confidence                     2234567889999987776655                                  467777774 57777


Q ss_pred             EEEE------CC-----CCC------eeccceeeEEE-CC----------EEEEEeCCCCeEEEEeC
Q 017371          333 RNLV------DP-----TGQ------LMSFVTSGLQV-DN----------HLYVISLTSNFIGKVQL  371 (372)
Q Consensus       333 ~~~~------~~-----~g~------~~~~~t~~~~~-~g----------~L~igs~~~~~i~~~~~  371 (372)
                      ..+.      ..     .|.      ....++++... ++          ++++.......|.++++
T Consensus       327 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~  393 (397)
T 1sq9_A          327 TTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFRE  393 (397)
T ss_dssp             EEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEE
T ss_pred             EEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEc
Confidence            7776      22     000      02357777776 34          45555556677877765

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.62  E-value=1.9e-05  Score=73.22  Aligned_cols=192  Identities=14%  Similarity=0.137  Sum_probs=109.1

Q ss_pred             EEEcCCCc-EEEEec-CC--eEEEEe--CCceEEEEecCCCcccCeEEcCCCC-EEEEeCCCcEEEEc-CCC-cEEEeee
Q 017371           84 ASMDKNGV-IYTATR-DG--WIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNANGLHKVS-EDG-VENFLSY  154 (372)
Q Consensus        84 i~~d~~G~-l~v~~~-~g--~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~-l~v~~~~~gv~~~~-~~g-~~~l~~~  154 (372)
                      .++.+||. |+++.. +|  .|+.++  +++.+.+....+....+.++.|||+ |+++.....++.++ .+| ...+...
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~  120 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQV  120 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeec
Confidence            45778885 555554 55  588888  5665554433332221678999996 55555555799999 556 4433322


Q ss_pred             cCCcccccccceEEccCCcEEEEeCC--CCCCC-ccc--ccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEec-
Q 017371          155 VNGSKLRFANDVVEASDGSLYFTVSS--SKYLP-HEY--CLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSR-  228 (372)
Q Consensus       155 ~~~~~~~~~~~l~~d~dG~i~vtd~~--~~~~~-~~~--~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~-  228 (372)
                       +... ........+++|+..++...  ..+.. ..+  ............|+.+|.++++.+.+.........++++| 
T Consensus       121 -~~~~-~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~  198 (388)
T 3pe7_A          121 -PAEW-VGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPY  198 (388)
T ss_dssp             -CTTE-EEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETT
T ss_pred             -hhhc-ccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCC
Confidence             2110 11112345788887664210  00000 000  0011223345789999999998887765544557889999 


Q ss_pred             CCCEEEEEeCC-----CCeEEEEEccCCCCcceeeeccCCCC-CCceeEEcCCCC-EEE
Q 017371          229 DEDYVVVCESW-----KFRCRKYWLKGERKGKLETFAENLPG-APDNINLAPDGT-FWI  280 (372)
Q Consensus       229 dg~~l~v~~~~-----~~~i~~~~~~g~~~~~~~~~~~~~~g-~p~~i~~d~~G~-lwv  280 (372)
                      ||+.++++...     ..+|+.++.++....   .+.....+ .....++.+||+ |+.
T Consensus       199 dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~---~l~~~~~~~~~~~~~~spdg~~l~~  254 (388)
T 3pe7_A          199 DDSTVAFCHEGPHDLVDARMWLINEDGTNMR---KVKTHAEGESCTHEFWVPDGSALVY  254 (388)
T ss_dssp             EEEEEEEEECSCTTTSSCSEEEEETTSCCCE---ESCCCCTTEEEEEEEECTTSSCEEE
T ss_pred             CCCEEEEEEecCCCCCcceEEEEeCCCCceE---EeeeCCCCcccccceECCCCCEEEE
Confidence            99888766543     348999988764322   22211111 123467899996 533

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=98.62  E-value=1.2e-05  Score=72.82  Aligned_cols=212  Identities=8%  Similarity=0.085  Sum_probs=127.7

Q ss_pred             EEEcCCCcEEEEe--cCCeEEEEe-CC-ceEEEEecCCCcccCeEEcCCCCEEEEeCC--------------CcEEEEcC
Q 017371           84 ASMDKNGVIYTAT--RDGWIKRLQ-DG-TWVNWKFIDSQTLVGLTSTKEGHLIICDNA--------------NGLHKVSE  145 (372)
Q Consensus        84 i~~d~~G~l~v~~--~~g~i~~~~-~g-~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~--------------~gv~~~~~  145 (372)
                      ++. .++.||+.+  .+++|++++ +| ..+.+...  .+. .|..+ .+.||.+...              ..|++++.
T Consensus        21 ~~~-~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~~--~~~-~i~~~-g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~   95 (302)
T 3s25_A           21 FCE-SDGEVFFSNTNDNGRLYAMNIDGSNIHKLSND--TAM-YINAD-KNYVYYVRNNNQKITSQTFFSYDRNSLCRIKR   95 (302)
T ss_dssp             EEE-ETTEEEEEEGGGTTEEEEEETTSCSCEEEEEE--EEE-EEEEC-SSEEEEEEECC------CCSSCCSEEEEEEET
T ss_pred             EEE-eCCEEEEEeCCCCceEEEEcCCCCCCEEccCC--cee-eEEEc-CCEEEEEECCCCcccccceeccCCCeEEEEeC
Confidence            444 467999997  478899999 66 44444331  223 44443 3457766432              25888886


Q ss_pred             CC--cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcce
Q 017371          146 DG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANG  223 (372)
Q Consensus       146 ~g--~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~g  223 (372)
                      +|  .+.+... .+      +.+++ .++.||+++.+              ......|++++.++.+.+.+.....    
T Consensus        96 dg~~~~~l~~~-~~------~~~s~-~g~~Iy~~~~~--------------~~~~~~Iy~~~~dGs~~~~lt~~~~----  149 (302)
T 3s25_A           96 NGHGSTVLDPD-PC------IYASL-IGNYIYYLHYD--------------TQTATSLYRIRIDGEEKKKIKNHYL----  149 (302)
T ss_dssp             TSCCCEEEECS-CE------EEEEE-ETTEEEEEEES--------------SSSCEEEEEEETTSCCCEEEESSCC----
T ss_pred             CCCcceEeecC-Cc------cEEEE-eCCEEEEEeec--------------CCCCceEEEEECCCCCeEEEeCCCc----
Confidence            55  4444322 11      12333 34589998711              0145689999998766666655432    


Q ss_pred             EEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCC-CEEEEEecCchhHHHHhhcchhHHHH
Q 017371          224 VALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDG-TFWIAIIKLDARRMKILNSSKLIKHV  302 (372)
Q Consensus       224 i~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G-~lwva~~~~~~~~~~~~~~~~~~r~~  302 (372)
                      .+++++++.||+++.+...|++.+++|..   .+.+...    +..+.+.|+| .||.+.+..                 
T Consensus       150 ~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~---~~~l~~~----~~~~~~~P~g~~iy~t~~~~-----------------  205 (302)
T 3s25_A          150 FTCNTSDRYFYYNNPKNGQLYRYDTASQS---EALFYDC----NCYKPVVLDDTNVYYMDVNR-----------------  205 (302)
T ss_dssp             CCSEEETTEEEEECTTTCCEEEEETTTTE---EEEEECS----CEEEEEEEETTEEEEEEGGG-----------------
T ss_pred             eEeeEECCEEEEEeCCCceEEEEECCCCC---EEEEeCC----CccceeeecCCEEEEEEcCC-----------------
Confidence            44688899999999878899999998742   2223221    2234455544 566666541                 


Q ss_pred             HHhcCccccccccCCCceEEEEECCCCcEEEEEECCCCCeeccceeeEEECCEEEEEe-CCCCeEEEEeCC
Q 017371          303 LAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVIS-LTSNFIGKVQLS  372 (372)
Q Consensus       303 ~~~~p~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~igs-~~~~~i~~~~~~  372 (372)
                                      ...|.+.+.+|.-...+.+  .. +   ..+...+++||..+ ...+.|.++++|
T Consensus       206 ----------------~~~I~~~~ldG~~~~~Lt~--~~-~---~~~~~~g~~Iy~~~~~~~~~i~~~~~D  254 (302)
T 3s25_A          206 ----------------DNAIVHVNINNPNPVVLTE--AN-I---EHYNVYGSLIFYQRGGDNPALCVVKND  254 (302)
T ss_dssp             ----------------TTEEEEECSSSCCCEECSC--SC-E---EEEEEETTEEEEEECSSSCEEEEEETT
T ss_pred             ----------------CcEEEEEECCCCCeEEEeC--CC-c---ceEEECCCEEEEEECCCCcEEEEEECC
Confidence                            2368888888766555432  11 1   23555677888763 345777777765

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=98.60  E-value=1.7e-05  Score=78.09  Aligned_cols=239  Identities=12%  Similarity=0.030  Sum_probs=136.3

Q ss_pred             CCCccEEEcCCCcEEEEecCCeEEEEe--CC----c-eEEEEecCCC-cccCeEEcC--CCCEEEEeCCC-cEEEEc-CC
Q 017371           79 NHPEDASMDKNGVIYTATRDGWIKRLQ--DG----T-WVNWKFIDSQ-TLVGLTSTK--EGHLIICDNAN-GLHKVS-ED  146 (372)
Q Consensus        79 ~~p~~i~~d~~G~l~v~~~~g~i~~~~--~g----~-~~~~~~~~~~-p~~gl~~d~--dG~l~v~~~~~-gv~~~~-~~  146 (372)
                      ..+.+++++++|.+.+...++.|..|+  ++    + ...+....+. .. .+++.+  +|+++++.... .+..++ .+
T Consensus        19 ~~v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~-~~~~sp~~~~~~l~s~~~dg~v~vw~~~~   97 (615)
T 1pgu_A           19 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVT-TVKFSPIKGSQYLCSGDESGKVIVWGWTF   97 (615)
T ss_dssp             TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEE-EEEECSSTTCCEEEEEETTSEEEEEEEEE
T ss_pred             CceeEEEECCCCCEEEEecCCeEEEEECCCCCCccccceEEecCCCceEE-EEEECcCCCCCEEEEecCCCEEEEEeCCC
Confidence            467789999999755544578898888  45    3 3333333334 55 899999  99866654443 466666 32


Q ss_pred             C------cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccC
Q 017371          147 G------VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYF  220 (372)
Q Consensus       147 g------~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~  220 (372)
                      +      .........+. ...+..+++.++|+..++-..             .....+.|+.+|.. .....+......
T Consensus        98 ~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~-------------~~~~~~~v~~~d~~-~~~~~~~~~~~~  162 (615)
T 1pgu_A           98 DKESNSVEVNVKSEFQVL-AGPISDISWDFEGRRLCVVGE-------------GRDNFGVFISWDSG-NSLGEVSGHSQR  162 (615)
T ss_dssp             EGGGTEEEEEEEEEEECC-SSCEEEEEECTTSSEEEEEEC-------------CSSCSEEEEETTTC-CEEEECCSCSSC
T ss_pred             Ccccccccccccchhhcc-cccEEEEEEeCCCCEEEEecc-------------CCCCccEEEEEECC-CcceeeecCCcc
Confidence            2      11111111111 135678999999986665321             01123678888732 333333222334


Q ss_pred             cceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCC---CCceeEEcCC-CCEEEEEecCchhHHHHhhcc
Q 017371          221 ANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPG---APDNINLAPD-GTFWIAIIKLDARRMKILNSS  296 (372)
Q Consensus       221 ~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g---~p~~i~~d~~-G~lwva~~~~~~~~~~~~~~~  296 (372)
                      ...++++++++.++++...++.|..+++...+  ....+. ...+   ....+++.++ |++.++...            
T Consensus       163 v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~--~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~------------  227 (615)
T 1pgu_A          163 INACHLKQSRPMRSMTVGDDGSVVFYQGPPFK--FSASDR-THHKQGSFVRDVEFSPDSGEFVITVGS------------  227 (615)
T ss_dssp             EEEEEECSSSSCEEEEEETTTEEEEEETTTBE--EEEEEC-SSSCTTCCEEEEEECSTTCCEEEEEET------------
T ss_pred             EEEEEECCCCCcEEEEEeCCCcEEEEeCCCcc--eeeeec-ccCCCCceEEEEEECCCCCCEEEEEeC------------
Confidence            56789999998566666667788888865421  112222 2222   3567889999 887666554            


Q ss_pred             hhHHHHHHhcCccccccccCCCceEEEEEC-CCCcEEEEEECCCCCeeccceeeEEEC-CEEEEEeCCCCeEEEEeC
Q 017371          297 KLIKHVLAAYPKLFSQFITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQVD-NHLYVISLTSNFIGKVQL  371 (372)
Q Consensus       297 ~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~~-g~L~igs~~~~~i~~~~~  371 (372)
                                            .+.|..+| .+++.+..+..+.......+.++...+ ..|+.++ ....|.++++
T Consensus       228 ----------------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~-~d~~i~~wd~  281 (615)
T 1pgu_A          228 ----------------------DRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVG-ADATIRVWDV  281 (615)
T ss_dssp             ----------------------TCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEE-TTSEEEEEET
T ss_pred             ----------------------CCeEEEEECCCCCEeEEecccccccCCceEEEEEcCCCEEEEEc-CCCcEEEEEC
Confidence                                  35667777 457777776220001112355555534 4455554 4466776664

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=98.60  E-value=7.6e-05  Score=67.71  Aligned_cols=184  Identities=14%  Similarity=0.122  Sum_probs=108.5

Q ss_pred             CCCCCCCccEEEcCCC--cEEEEecCCeEEEEe-CC---c----eEEEEecCCCcccCeEEcCCCCEEEEeCC-CcEEEE
Q 017371           75 EGSVNHPEDASMDKNG--VIYTATRDGWIKRLQ-DG---T----WVNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKV  143 (372)
Q Consensus        75 ~g~~~~p~~i~~d~~G--~l~v~~~~g~i~~~~-~g---~----~~~~~~~~~~p~~gl~~d~dG~l~v~~~~-~gv~~~  143 (372)
                      .|.-....++++.+++  .|..+..|+.|..|+ .+   +    ...+........ .+++.++|++.++... ..+..+
T Consensus        14 ~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~-~~~~s~dg~~l~s~s~D~~v~~w   92 (319)
T 3frx_A           14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQ-DCTLTADGAYALSASWDKTLRLW   92 (319)
T ss_dssp             CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEE-EEEECTTSSEEEEEETTSEEEEE
T ss_pred             ccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEE-EEEECCCCCEEEEEeCCCEEEEE
Confidence            3444456778888754  456667899998887 21   1    122222223344 8899999987666544 447777


Q ss_pred             c-CCC--cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccC
Q 017371          144 S-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYF  220 (372)
Q Consensus       144 ~-~~g--~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~  220 (372)
                      | .++  ...+...     ...+..+++.+++.+.++-+                 .++.|..+|........+......
T Consensus        93 d~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~l~s~s-----------------~D~~i~vwd~~~~~~~~~~~h~~~  150 (319)
T 3frx_A           93 DVATGETYQRFVGH-----KSDVMSVDIDKKASMIISGS-----------------RDKTIKVWTIKGQCLATLLGHNDW  150 (319)
T ss_dssp             ETTTTEEEEEEECC-----SSCEEEEEECTTSCEEEEEE-----------------TTSCEEEEETTSCEEEEECCCSSC
T ss_pred             ECCCCCeeEEEccC-----CCcEEEEEEcCCCCEEEEEe-----------------CCCeEEEEECCCCeEEEEeccCCc
Confidence            7 666  3333211     12467889999998777633                 466788888765544444332233


Q ss_pred             cceEEEecCCC-----EEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 017371          221 ANGVALSRDED-----YVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       221 ~~gi~~~~dg~-----~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~  284 (372)
                      ...+++.|.+.     .++++...+..|..+++...+  ....+. ...+....+++.++|++.++...
T Consensus       151 v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~-~h~~~v~~~~~sp~g~~l~s~~~  216 (319)
T 3frx_A          151 VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ--IEADFI-GHNSNINTLTASPDGTLIASAGK  216 (319)
T ss_dssp             EEEEEECCC------CCEEEEEETTSCEEEEETTTTE--EEEEEC-CCCSCEEEEEECTTSSEEEEEET
T ss_pred             EEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch--hheeec-CCCCcEEEEEEcCCCCEEEEEeC
Confidence            34566766432     245555566778888875421  111222 22334567889999987776655

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=98.60  E-value=4.6e-05  Score=71.87  Aligned_cols=227  Identities=13%  Similarity=0.089  Sum_probs=137.2

Q ss_pred             CCccEEEcCCCcE-EEEecCCeEEEEe--CCce-EEEEecCCCcccCeEEcCCCCEEEEeCC-CcEEEEc-CCC--cEEE
Q 017371           80 HPEDASMDKNGVI-YTATRDGWIKRLQ--DGTW-VNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG--VENF  151 (372)
Q Consensus        80 ~p~~i~~d~~G~l-~v~~~~g~i~~~~--~g~~-~~~~~~~~~p~~gl~~d~dG~l~v~~~~-~gv~~~~-~~g--~~~l  151 (372)
                      ...++++.++|.+ ..++.+|.|..|+  +++. ..+........ .+++.++|+.+++... .-+..++ .++  ...+
T Consensus       152 ~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~-~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~  230 (410)
T 1vyh_C          152 SVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVS-SVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF  230 (410)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEE-EEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEE-EEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence            4567889888864 4556899999998  3332 22222223345 8999999986665444 4477777 666  3333


Q ss_pred             eeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCc-cCcceEEEecC-
Q 017371          152 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF-YFANGVALSRD-  229 (372)
Q Consensus       152 ~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~-~~~~gi~~~~d-  229 (372)
                      ...     ...+..+.+.++|+++++-+                 .++.|..+|..+++......+. ...+.++++|+ 
T Consensus       231 ~~h-----~~~v~~~~~~~~g~~l~s~s-----------------~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~  288 (410)
T 1vyh_C          231 TGH-----REWVRMVRPNQDGTLIASCS-----------------NDQTVRVWVVATKECKAELREHRHVVECISWAPES  288 (410)
T ss_dssp             ECC-----SSCEEEEEECTTSSEEEEEE-----------------TTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSC
T ss_pred             eCC-----CccEEEEEECCCCCEEEEEc-----------------CCCeEEEEECCCCceeeEecCCCceEEEEEEcCcc
Confidence            211     12456788889998877632                 4677888888777655443332 23356777775 


Q ss_pred             -------------------CCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHH
Q 017371          230 -------------------EDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRM  290 (372)
Q Consensus       230 -------------------g~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~  290 (372)
                                         +. ++++.+.++.|..+++....  ....+. ...+....++++++|.+.++...      
T Consensus       289 ~~~~~~~~~~~~~~~~~~~g~-~l~sgs~D~~i~iwd~~~~~--~~~~~~-~h~~~v~~v~~~~~g~~l~s~s~------  358 (410)
T 1vyh_C          289 SYSSISEATGSETKKSGKPGP-FLLSGSRDKTIKMWDVSTGM--CLMTLV-GHDNWVRGVLFHSGGKFILSCAD------  358 (410)
T ss_dssp             GGGGGGGCCSCC-------CC-EEEEEETTSEEEEEETTTTE--EEEEEE-CCSSCEEEEEECSSSSCEEEEET------
T ss_pred             cccchhhhccccccccCCCCC-EEEEEeCCCeEEEEECCCCc--eEEEEE-CCCCcEEEEEEcCCCCEEEEEeC------
Confidence                               44 45555566778888875431  122222 23334567899999987666655      


Q ss_pred             HHhhcchhHHHHHHhcCccccccccCCCceEEEEECC-CCcEEEEEECCCCCeeccceeeEEE-CCEEEEEeCCCCeEEE
Q 017371          291 KILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGK  368 (372)
Q Consensus       291 ~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~-~g~L~igs~~~~~i~~  368 (372)
                                                  .+.|..+|. +++.+..+....+    .++++... ++.+.+.......|.+
T Consensus       359 ----------------------------D~~i~vwd~~~~~~~~~~~~h~~----~v~~l~~~~~~~~l~sgs~D~~i~v  406 (410)
T 1vyh_C          359 ----------------------------DKTLRVWDYKNKRCMKTLNAHEH----FVTSLDFHKTAPYVVTGSVDQTVKV  406 (410)
T ss_dssp             ----------------------------TTEEEEECCTTSCCCEEEECCSS----CEEEEEECSSSSCEEEEETTSEEEE
T ss_pred             ----------------------------CCeEEEEECCCCceEEEEcCCCC----cEEEEEEcCCCCEEEEEeCCCcEEE
Confidence                                        456777774 4666666654333    47777776 3433333334566776


Q ss_pred             EeC
Q 017371          369 VQL  371 (372)
Q Consensus       369 ~~~  371 (372)
                      +++
T Consensus       407 W~~  409 (410)
T 1vyh_C          407 WEC  409 (410)
T ss_dssp             EC-
T ss_pred             EeC
Confidence            654

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=98.59  E-value=2e-05  Score=73.15  Aligned_cols=186  Identities=8%  Similarity=-0.006  Sum_probs=116.3

Q ss_pred             CCCCccEEEcCCC--cEEEEecCCeEEEEe--CCceEEEEe---cCCCcccCeEEcC-CCCEEEE-eCCCcEEEEc-CCC
Q 017371           78 VNHPEDASMDKNG--VIYTATRDGWIKRLQ--DGTWVNWKF---IDSQTLVGLTSTK-EGHLIIC-DNANGLHKVS-EDG  147 (372)
Q Consensus        78 ~~~p~~i~~d~~G--~l~v~~~~g~i~~~~--~g~~~~~~~---~~~~p~~gl~~d~-dG~l~v~-~~~~gv~~~~-~~g  147 (372)
                      -....++++.++|  .|.++..+|.|..|+  +++......   ..+... ++++.+ +++++++ .....+..++ .+.
T Consensus        73 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  151 (383)
T 3ei3_B           73 DRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAIT-GMKFNQFNTNQLFVSSIRGATTLRDFSGS  151 (383)
T ss_dssp             SSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEE-EEEEETTEEEEEEEEETTTEEEEEETTSC
T ss_pred             CCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCcee-EEEeCCCCCCEEEEEeCCCEEEEEECCCC
Confidence            3456789999987  566667899999999  454443332   223445 899998 5565554 4334467777 434


Q ss_pred             -cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEE
Q 017371          148 -VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVAL  226 (372)
Q Consensus       148 -~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~  226 (372)
                       ...+... .+ ....+..+++.++|++.++-                 ..++.|..+|........+.........+++
T Consensus       152 ~~~~~~~~-~~-~~~~v~~~~~~~~~~~l~~~-----------------~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~  212 (383)
T 3ei3_B          152 VIQVFAKT-DS-WDYWYCCVDVSVSRQMLATG-----------------DSTGRLLLLGLDGHEIFKEKLHKAKVTHAEF  212 (383)
T ss_dssp             EEEEEECC-CC-SSCCEEEEEEETTTTEEEEE-----------------ETTSEEEEEETTSCEEEEEECSSSCEEEEEE
T ss_pred             ceEEEecc-CC-CCCCeEEEEECCCCCEEEEE-----------------CCCCCEEEEECCCCEEEEeccCCCcEEEEEE
Confidence             4443321 11 11346788999999876653                 2568899999864444444444445678999


Q ss_pred             ecCCCEEEEEeCCCCeEEEEEccCCCC-cceeeeccCCCCCCceeEEcC-CCCEEEEEec
Q 017371          227 SRDEDYVVVCESWKFRCRKYWLKGERK-GKLETFAENLPGAPDNINLAP-DGTFWIAIIK  284 (372)
Q Consensus       227 ~~dg~~l~v~~~~~~~i~~~~~~g~~~-~~~~~~~~~~~g~p~~i~~d~-~G~lwva~~~  284 (372)
                      +++++.++++...+..|..+++...+. ....... ...+....+++++ +|++.++...
T Consensus       213 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~  271 (383)
T 3ei3_B          213 NPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQ  271 (383)
T ss_dssp             CSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEES
T ss_pred             CCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcC
Confidence            999984555555677888898875321 1111111 2334467789999 9987666554

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=98.59  E-value=7.8e-06  Score=75.76  Aligned_cols=227  Identities=13%  Similarity=0.125  Sum_probs=131.6

Q ss_pred             CCccEEEcCCCcEEEEecCCeEEEEe--CCceE---EEEe-c-CCCcccCeEEcCCCCEEEEeCC-CcEEEEc-CCC--c
Q 017371           80 HPEDASMDKNGVIYTATRDGWIKRLQ--DGTWV---NWKF-I-DSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG--V  148 (372)
Q Consensus        80 ~p~~i~~d~~G~l~v~~~~g~i~~~~--~g~~~---~~~~-~-~~~p~~gl~~d~dG~l~v~~~~-~gv~~~~-~~g--~  148 (372)
                      +..++++.+++.+.++..+|.|..|+  +++..   .+.. . .+... .+++.++|+++++... ..|..++ .++  .
T Consensus        96 ~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~-~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~  174 (357)
T 4g56_B           96 GVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVK-TLSVFSDGTQAVSGGKDFSVKVWDLSQKAVL  174 (357)
T ss_dssp             CEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEE-EEEECSSSSEEEEEETTSCEEEEETTTTEEE
T ss_pred             CEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEE-EEEECCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence            34578899999999998999998887  44311   1111 1 12345 8999999987666444 4477777 556  3


Q ss_pred             EEEeeecCCcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCC---ccCcceE
Q 017371          149 ENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG---FYFANGV  224 (372)
Q Consensus       149 ~~l~~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~---~~~~~gi  224 (372)
                      ..+.    +. ...++.+++.+++. ++++-.                 .++.|..+|..+++.......   ......+
T Consensus       175 ~~~~----~h-~~~v~~v~~s~~~~~~~~s~~-----------------~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v  232 (357)
T 4g56_B          175 KSYN----AH-SSEVNCVAACPGKDTIFLSCG-----------------EDGRILLWDTRKPKPATRIDFCASDTIPTSV  232 (357)
T ss_dssp             EEEC----CC-SSCEEEEEECTTCSSCEEEEE-----------------TTSCEEECCTTSSSCBCBCCCTTCCSCEEEE
T ss_pred             EEEc----CC-CCCEEEEEEccCCCceeeeec-----------------cCCceEEEECCCCceeeeeeeccccccccch
Confidence            3221    11 13466788888763 555422                 467788888876654332221   1234578


Q ss_pred             EEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHH
Q 017371          225 ALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLA  304 (372)
Q Consensus       225 ~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~  304 (372)
                      +++|++..++++...+..|..+++...+.  ...+. ...+....+++.++|.-++++...                   
T Consensus       233 ~~sp~~~~~la~g~~d~~i~~wd~~~~~~--~~~~~-~~~~~v~~l~~sp~~~~~lasgs~-------------------  290 (357)
T 4g56_B          233 TWHPEKDDTFACGDETGNVSLVNIKNPDS--AQTSA-VHSQNITGLAYSYHSSPFLASISE-------------------  290 (357)
T ss_dssp             EECTTSTTEEEEEESSSCEEEEESSCGGG--CEEEC-CCSSCEEEEEECSSSSCCEEEEET-------------------
T ss_pred             hhhhcccceEEEeecccceeEEECCCCcE--eEEEe-ccceeEEEEEEcCCCCCEEEEEeC-------------------
Confidence            89998766776666677788888765322  12222 222334678888888544443321                   


Q ss_pred             hcCccccccccCCCceEEEEECCC-CcEEEEEECCCCCeeccceeeEEE--CCE-EEEEeCCCCeEEEEeC
Q 017371          305 AYPKLFSQFITLGGGAHLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQV--DNH-LYVISLTSNFIGKVQL  371 (372)
Q Consensus       305 ~~p~~~~~~~~~~~~~~v~~~~~~-g~~~~~~~~~~g~~~~~~t~~~~~--~g~-L~igs~~~~~i~~~~~  371 (372)
                                    .+.|..+|.+ ++.+..+. .    ...++++.+.  ++. |.-++ ....|.+.++
T Consensus       291 --------------D~~i~iwd~~~~~~~~~~~-H----~~~V~~vafsP~d~~~l~s~s-~Dg~v~iW~~  341 (357)
T 4g56_B          291 --------------DCTVAVLDADFSEVFRDLS-H----RDFVTGVAWSPLDHSKFTTVG-WDHKVLHHHL  341 (357)
T ss_dssp             --------------TSCEEEECTTSCEEEEECC-C----SSCEEEEEECSSSTTEEEEEE-TTSCEEEEEC
T ss_pred             --------------CCEEEEEECCCCcEeEECC-C----CCCEEEEEEeCCCCCEEEEEc-CCCeEEEEEC
Confidence                          3456667754 55554432 1    2357777774  444 44444 4466666665

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=98.58  E-value=4.7e-05  Score=70.67  Aligned_cols=239  Identities=12%  Similarity=0.027  Sum_probs=137.8

Q ss_pred             CCCCCCCccEEEcCCCcEEEEecCCeEEEEe--CCc-------eEEEEecCCCcccCeEEcCC----C---CEEEEeC-C
Q 017371           75 EGSVNHPEDASMDKNGVIYTATRDGWIKRLQ--DGT-------WVNWKFIDSQTLVGLTSTKE----G---HLIICDN-A  137 (372)
Q Consensus        75 ~g~~~~p~~i~~d~~G~l~v~~~~g~i~~~~--~g~-------~~~~~~~~~~p~~gl~~d~d----G---~l~v~~~-~  137 (372)
                      .+.-....++++++ ..|+++..+|.|..|+  .++       ...+........ .+++.++    |   +++++.. .
T Consensus        13 ~~h~~~i~~~~~~~-~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~g~~~~~l~s~~~d   90 (397)
T 1sq9_A           13 KAHDADIFSVSACN-SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLH-HVDVLQAIERDAFELCLVATTSFS   90 (397)
T ss_dssp             SCSSSCEEEEEECS-SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEE-EEEEEEEEETTTEEEEEEEEEETT
T ss_pred             hhhhcCeEEEEecC-CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEE-EEEEecccccCCccccEEEEEcCC
Confidence            44444567788887 6788888999999999  444       444443333445 8999988    8   7665543 3


Q ss_pred             CcEEEEc-CCC-c--EEEeeecCCcc----cccccceEEc----cCCcE-EEEeCCCCCCCcccccccccccCCCeEEEE
Q 017371          138 NGLHKVS-EDG-V--ENFLSYVNGSK----LRFANDVVEA----SDGSL-YFTVSSSKYLPHEYCLDILEGKPHGQLLKY  204 (372)
Q Consensus       138 ~gv~~~~-~~g-~--~~l~~~~~~~~----~~~~~~l~~d----~dG~i-~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~  204 (372)
                      ..|..++ .++ .  ..+.....+..    ...+..+++.    ++|+. +++-.                 .++.|..+
T Consensus        91 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~-----------------~dg~i~iw  153 (397)
T 1sq9_A           91 GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATD-----------------VKGTTYIW  153 (397)
T ss_dssp             SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEE-----------------TTSCEEEE
T ss_pred             CCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEe-----------------CCCcEEEE
Confidence            4466676 333 2  11111111110    1456788999    88876 55422                 35667777


Q ss_pred             eCCC------Ce-EE-----EEe-------CCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeecc--CC
Q 017371          205 DPSS------NI-TT-----LVA-------DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAE--NL  263 (372)
Q Consensus       205 d~~t------~~-~~-----~~~-------~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~--~~  263 (372)
                      |..+      ++ ..     .+.       ........+++++++  ++++...++.|..|++...+  ....+..  ..
T Consensus       154 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~h  229 (397)
T 1sq9_A          154 KFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLR--PLYNFESQHSM  229 (397)
T ss_dssp             EEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTE--EEEEEECCC--
T ss_pred             eCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCc--eeEEEeccccc
Confidence            6554      21 11     221       123345689999999  44555567789989886432  1222221  02


Q ss_pred             ---CCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCc---eEEEEEC-CCCcEEEEEE
Q 017371          264 ---PGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGG---AHLIHVA-EDGTIIRNLV  336 (372)
Q Consensus       264 ---~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~---~~v~~~~-~~g~~~~~~~  336 (372)
                         .+....++++++|++.++...                                  .   +.|..+| .+++.+..+.
T Consensus       230 ~~~~~~i~~i~~~~~~~~l~~~~~----------------------------------d~~~g~i~i~d~~~~~~~~~~~  275 (397)
T 1sq9_A          230 INNSNSIRSVKFSPQGSLLAIAHD----------------------------------SNSFGCITLYETEFGERIGSLS  275 (397)
T ss_dssp             -CCCCCEEEEEECSSTTEEEEEEE----------------------------------ETTEEEEEEEETTTCCEEEEEC
T ss_pred             cccCCccceEEECCCCCEEEEEec----------------------------------CCCCceEEEEECCCCcccceec
Confidence               334677899999987776655                                  3   5777787 4577777776


Q ss_pred             CCCC---------CeeccceeeEEE-CC-EEEEEeCCCCeEEEEeC
Q 017371          337 DPTG---------QLMSFVTSGLQV-DN-HLYVISLTSNFIGKVQL  371 (372)
Q Consensus       337 ~~~g---------~~~~~~t~~~~~-~g-~L~igs~~~~~i~~~~~  371 (372)
                      .+..         .....++++... ++ .|+.++ ....|.++++
T Consensus       276 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~  320 (397)
T 1sq9_A          276 VPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAG-WDGKLRFWDV  320 (397)
T ss_dssp             BC--------CCBSBSSCEEEEEECSSSSEEEEEE-TTSEEEEEET
T ss_pred             cCcccccccccccccCCcEEEEEECCCCCEEEEEe-CCCeEEEEEc
Confidence            5110         012346777775 34 455554 5567777765

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.56  E-value=9e-07  Score=86.49  Aligned_cols=184  Identities=11%  Similarity=0.105  Sum_probs=117.2

Q ss_pred             ceEecCCCCCCCccEEEcCCC-cEEEEecCC--------------------------------------eEEEEe--C--
Q 017371           70 FIKVGEGSVNHPEDASMDKNG-VIYTATRDG--------------------------------------WIKRLQ--D--  106 (372)
Q Consensus        70 ~~~~~~g~~~~p~~i~~d~~G-~l~v~~~~g--------------------------------------~i~~~~--~--  106 (372)
                      +..+..|.  .|+.++++++| .+|+++.+.                                      .|..+|  .  
T Consensus       188 ~~qI~Vgg--~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~  265 (595)
T 1fwx_A          188 AWQVLVSG--NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEA  265 (595)
T ss_dssp             EEEEEESS--CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGG
T ss_pred             EEEEEeCC--CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccC
Confidence            44555553  79999999988 677776331                                      245555  2  


Q ss_pred             Cce-EEEEecCCCcccCeEEcCCCC-EEEEeCC-CcEEEEc-CCCc-----------EEEeeecCCcccccccceEEccC
Q 017371          107 GTW-VNWKFIDSQTLVGLTSTKEGH-LIICDNA-NGLHKVS-EDGV-----------ENFLSYVNGSKLRFANDVVEASD  171 (372)
Q Consensus       107 g~~-~~~~~~~~~p~~gl~~d~dG~-l~v~~~~-~gv~~~~-~~g~-----------~~l~~~~~~~~~~~~~~l~~d~d  171 (372)
                      ++. ......+..|. |+.++|||+ +||++.. ..+..++ ....           ........|   ..|.+++++++
T Consensus       266 ~~~~~~~Ipvg~~Ph-Gv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG---~gP~h~aF~~d  341 (595)
T 1fwx_A          266 SSLFTRYIPIANNPH-GCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELG---LGPLHTAFDGR  341 (595)
T ss_dssp             CCSSEEEEEEESSCC-CEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCC---SCEEEEEECTT
T ss_pred             CceeEEEEecCCCce-EEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCC---CCcceEEECCC
Confidence            222 23344456889 999999997 6777654 4588887 3210           122222222   46889999999


Q ss_pred             CcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCC----------CeEEEEeCCccC------cceEEEecCCCEEEE
Q 017371          172 GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS----------NITTLVADGFYF------ANGVALSRDEDYVVV  235 (372)
Q Consensus       172 G~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t----------~~~~~~~~~~~~------~~gi~~~~dg~~l~v  235 (372)
                      |++|++..                 -++.|.++|.++          .++....+....      +.|+.+++||++||+
T Consensus       342 G~aY~t~~-----------------ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~  404 (595)
T 1fwx_A          342 GNAYTSLF-----------------LDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVC  404 (595)
T ss_dssp             SEEEEEET-----------------TTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEE
T ss_pred             CeEEEEEe-----------------cCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEE
Confidence            99999854                 345677776543          222221222222      367788999999999


Q ss_pred             EeCCC-CeE-----------EEEEccCCCCcceeeeccCCCCCCceeEEcCCCCE
Q 017371          236 CESWK-FRC-----------RKYWLKGERKGKLETFAENLPGAPDNINLAPDGTF  278 (372)
Q Consensus       236 ~~~~~-~~i-----------~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~l  278 (372)
                      ++... +|+           ..|++.|.+.........  .+.|+.+.+++...|
T Consensus       405 ~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~lv~d~p~--~~ePh~~~i~~~~~~  457 (595)
T 1fwx_A          405 LSKFSKDRFLNVGPLKPENDQLIDISGDKMVLVHDGPT--FAEPHDAIAVHPSIL  457 (595)
T ss_dssp             EESCCTTSSCCCCSSCCEEEEEEECSSSSCEEEEEEEE--SSCCCCEEEECTTTT
T ss_pred             cCCCCccccccCCCCCCCcceEEEcCCCcEEEEEEEcC--CCCCCceEEccHHHc
Confidence            99877 777           788987766554433322  346899998887755

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=98.56  E-value=1.6e-05  Score=79.17  Aligned_cols=185  Identities=10%  Similarity=0.004  Sum_probs=107.7

Q ss_pred             CCccEEEcCCCcEEEEecCCeEEEEe--CCce-EEEEecCCCcccCeEEcCCCCEEEEeCCCc-EEEEc-CCC-cEEEee
Q 017371           80 HPEDASMDKNGVIYTATRDGWIKRLQ--DGTW-VNWKFIDSQTLVGLTSTKEGHLIICDNANG-LHKVS-EDG-VENFLS  153 (372)
Q Consensus        80 ~p~~i~~d~~G~l~v~~~~g~i~~~~--~g~~-~~~~~~~~~p~~gl~~d~dG~l~v~~~~~g-v~~~~-~~g-~~~l~~  153 (372)
                      .|..++++|+|+..+...++.|..++  +++. ..+........ .+++.|+|++.++....| +..+| .++ ..... 
T Consensus        20 ~~~~~~~spdg~~l~~~~~~~v~l~~~~~~~~~~~~~~h~~~v~-~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~-   97 (611)
T 1nr0_A           20 TAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTT-VAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKT-   97 (611)
T ss_dssp             CCCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEE-EEEECTTSSEEEEEETTSEEEEEESSSTTCCEEE-
T ss_pred             ceeEEeeCCCCCEEEeCCCCEEEEecCCCcccCeEecCCCCceE-EEEECCCCcEEEEEeCCCCEEEeECCCCcceeeE-
Confidence            67889999999655544466788888  4443 33332233445 899999998776654444 66677 444 21111 


Q ss_pred             ecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEE
Q 017371          154 YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYV  233 (372)
Q Consensus       154 ~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l  233 (372)
                      ...+. ...+..++++++|+..++-...             ....+.|+.+|.. .....+...-...+.++|+|++...
T Consensus        98 ~~~~~-~~~v~~v~fs~dg~~l~~~~~~-------------~~~~~~v~~wd~~-~~~~~l~gh~~~v~~v~f~p~~~~~  162 (611)
T 1nr0_A           98 TIPVF-SGPVKDISWDSESKRIAAVGEG-------------RERFGHVFLFDTG-TSNGNLTGQARAMNSVDFKPSRPFR  162 (611)
T ss_dssp             EEECS-SSCEEEEEECTTSCEEEEEECC-------------SSCSEEEEETTTC-CBCBCCCCCSSCEEEEEECSSSSCE
T ss_pred             eeccc-CCceEEEEECCCCCEEEEEECC-------------CCceeEEEEeeCC-CCcceecCCCCCceEEEECCCCCeE
Confidence            11111 1356789999999876653210             0123567777642 1111111122234678999998866


Q ss_pred             EEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 017371          234 VVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       234 ~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~  284 (372)
                      +++.+.+..|..++....  .....+. ...+....+++.++|++.++...
T Consensus       163 l~s~s~D~~v~lwd~~~~--~~~~~l~-~H~~~V~~v~fspdg~~las~s~  210 (611)
T 1nr0_A          163 IISGSDDNTVAIFEGPPF--KFKSTFG-EHTKFVHSVRYNPDGSLFASTGG  210 (611)
T ss_dssp             EEEEETTSCEEEEETTTB--EEEEEEC-CCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEEeCCCeEEEEECCCC--eEeeeec-cccCceEEEEECCCCCEEEEEEC
Confidence            666666777777775432  1112222 23334667899999998777655

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=98.56  E-value=1e-05  Score=75.94  Aligned_cols=149  Identities=10%  Similarity=-0.009  Sum_probs=92.0

Q ss_pred             CCccEEEcCCC-cEEEEecCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCCEEEEeCC-CcEEEEc-CCC-cEEEee
Q 017371           80 HPEDASMDKNG-VIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG-VENFLS  153 (372)
Q Consensus        80 ~p~~i~~d~~G-~l~v~~~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~-~gv~~~~-~~g-~~~l~~  153 (372)
                      ...+++++++| .|+++..+|.|..|+  .++....... .......++.++|+++++... ..+..++ ..+ ..... 
T Consensus        58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-  135 (420)
T 3vl1_A           58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKR-ADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREID-  135 (420)
T ss_dssp             CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCS-CCEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEET-
T ss_pred             cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEec-CCceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeec-
Confidence            35578999877 677788899999998  2222111111 122213356788876665444 4477777 555 32221 


Q ss_pred             ecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCC-ccCcceEEEecCCCE
Q 017371          154 YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSRDEDY  232 (372)
Q Consensus       154 ~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~-~~~~~gi~~~~dg~~  232 (372)
                        .+ ....+..+++.++|++.++-                 ..++.|..+|..+++......+ ......++++|+++.
T Consensus       136 --~~-h~~~v~~~~~~~~~~~l~s~-----------------s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~  195 (420)
T 3vl1_A          136 --QA-HVSEITKLKFFPSGEALISS-----------------SQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN  195 (420)
T ss_dssp             --TS-SSSCEEEEEECTTSSEEEEE-----------------ETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTE
T ss_pred             --cc-ccCccEEEEECCCCCEEEEE-----------------eCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCE
Confidence              11 11356789999999866652                 2567899999876654433332 334467899999996


Q ss_pred             EEEEeCCCCeEEEEEccCC
Q 017371          233 VVVCESWKFRCRKYWLKGE  251 (372)
Q Consensus       233 l~v~~~~~~~i~~~~~~g~  251 (372)
                      ++.+. .++.|..+++...
T Consensus       196 l~s~~-~d~~v~iwd~~~~  213 (420)
T 3vl1_A          196 VLSAS-LDGTIRLWECGTG  213 (420)
T ss_dssp             EEEEE-TTSCEEEEETTTT
T ss_pred             EEEEc-CCCcEEEeECCCC
Confidence            66554 4567888887643

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=98.56  E-value=0.00013  Score=71.86  Aligned_cols=229  Identities=11%  Similarity=0.088  Sum_probs=138.9

Q ss_pred             CccEEEcC--CCc-EEEEecCCeEEEEe--CC------ceE---EEEecCCCcccCeEEcCCCCEEEEeCCC----c-EE
Q 017371           81 PEDASMDK--NGV-IYTATRDGWIKRLQ--DG------TWV---NWKFIDSQTLVGLTSTKEGHLIICDNAN----G-LH  141 (372)
Q Consensus        81 p~~i~~d~--~G~-l~v~~~~g~i~~~~--~g------~~~---~~~~~~~~p~~gl~~d~dG~l~v~~~~~----g-v~  141 (372)
                      ..++++.+  +|. |++++.+|.|..|+  ++      +.+   .+....+... .+++.++|+.+++....    + +.
T Consensus        67 v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~~~~~~~~v~  145 (615)
T 1pgu_A           67 VTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPIS-DISWDFEGRRLCVVGEGRDNFGVFI  145 (615)
T ss_dssp             EEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEE-EEEECTTSSEEEEEECCSSCSEEEE
T ss_pred             EEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEE-EEEEeCCCCEEEEeccCCCCccEEE
Confidence            67899999  885 55566899998888  33      212   2222233445 89999999866654332    2 44


Q ss_pred             EEcCCC-cEEEeeecCCcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCcc
Q 017371          142 KVSEDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFY  219 (372)
Q Consensus       142 ~~~~~g-~~~l~~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~  219 (372)
                      .++... ...+    .+. ...+..+++.++|. +.++-                 ..++.|..+|..+++.........
T Consensus       146 ~~d~~~~~~~~----~~~-~~~v~~~~~~~~~~~~l~~~-----------------~~d~~v~vwd~~~~~~~~~~~~~~  203 (615)
T 1pgu_A          146 SWDSGNSLGEV----SGH-SQRINACHLKQSRPMRSMTV-----------------GDDGSVVFYQGPPFKFSASDRTHH  203 (615)
T ss_dssp             ETTTCCEEEEC----CSC-SSCEEEEEECSSSSCEEEEE-----------------ETTTEEEEEETTTBEEEEEECSSS
T ss_pred             EEECCCcceee----ecC-CccEEEEEECCCCCcEEEEE-----------------eCCCcEEEEeCCCcceeeeecccC
Confidence            444222 2222    111 13567899999996 55542                 256789999988777655544433


Q ss_pred             ----CcceEEEecC-CCEEEEEeCCCCeEEEEEccCCCCcceeeecc---CCCCCCceeEEcCCCCEEEEEecCchhHHH
Q 017371          220 ----FANGVALSRD-EDYVVVCESWKFRCRKYWLKGERKGKLETFAE---NLPGAPDNINLAPDGTFWIAIIKLDARRMK  291 (372)
Q Consensus       220 ----~~~gi~~~~d-g~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~---~~~g~p~~i~~d~~G~lwva~~~~~~~~~~  291 (372)
                          ....++++|+ ++.++.+. .++.|..+++...+  ....+..   ...+....+++. +|++.++...       
T Consensus       204 ~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~-------  272 (615)
T 1pgu_A          204 KQGSFVRDVEFSPDSGEFVITVG-SDRKISCFDGKSGE--FLKYIEDDQEPVQGGIFALSWL-DSQKFATVGA-------  272 (615)
T ss_dssp             CTTCCEEEEEECSTTCCEEEEEE-TTCCEEEEETTTCC--EEEECCBTTBCCCSCEEEEEES-SSSEEEEEET-------
T ss_pred             CCCceEEEEEECCCCCCEEEEEe-CCCeEEEEECCCCC--EeEEecccccccCCceEEEEEc-CCCEEEEEcC-------
Confidence                3467899999 88666555 45678888876432  1222211   223345678888 8887776665       


Q ss_pred             HhhcchhHHHHHHhcCccccccccCCCceEEEEECC-CCcEEEEEECCCCCeeccceeeEE-ECCEEEEEeCCCCeEEEE
Q 017371          292 ILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQ-VDNHLYVISLTSNFIGKV  369 (372)
Q Consensus       292 ~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~-~~g~L~igs~~~~~i~~~  369 (372)
                                                 .+.+..++. +++.+..+..........+..+.. .++.+..++. ...|..+
T Consensus       273 ---------------------------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~i~~~  324 (615)
T 1pgu_A          273 ---------------------------DATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSL-DGTLNFY  324 (615)
T ss_dssp             ---------------------------TSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEET-TSCEEEE
T ss_pred             ---------------------------CCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEEC-CCCEEEE
Confidence                                       456777774 477777777653222233444444 4566766665 4566666


Q ss_pred             eC
Q 017371          370 QL  371 (372)
Q Consensus       370 ~~  371 (372)
                      ++
T Consensus       325 d~  326 (615)
T 1pgu_A          325 EL  326 (615)
T ss_dssp             ET
T ss_pred             EC
Confidence            54

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.54  E-value=3.7e-05  Score=77.60  Aligned_cols=181  Identities=12%  Similarity=0.133  Sum_probs=107.9

Q ss_pred             CccEEEcCCCc-EEEEe---------------------------------cCCeEEEEe--CCceEEEEec---CCCccc
Q 017371           81 PEDASMDKNGV-IYTAT---------------------------------RDGWIKRLQ--DGTWVNWKFI---DSQTLV  121 (372)
Q Consensus        81 p~~i~~d~~G~-l~v~~---------------------------------~~g~i~~~~--~g~~~~~~~~---~~~p~~  121 (372)
                      +.++++.+||+ |+++.                                 .+..|+.++  +++...+...   ...+. 
T Consensus       183 ~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~-  261 (706)
T 2z3z_A          183 EKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLT-  261 (706)
T ss_dssp             CCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEE-
T ss_pred             CceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEe-
Confidence            47899999995 55554                                 235688888  4554433221   12244 


Q ss_pred             CeEEcCCCC-EEEEeCCC-----cEEEEc-CCC--cEEEeeecCCcccccccceEEcc--CCcEEEEeCCCCCCCccccc
Q 017371          122 GLTSTKEGH-LIICDNAN-----GLHKVS-EDG--VENFLSYVNGSKLRFANDVVEAS--DGSLYFTVSSSKYLPHEYCL  190 (372)
Q Consensus       122 gl~~d~dG~-l~v~~~~~-----gv~~~~-~~g--~~~l~~~~~~~~~~~~~~l~~d~--dG~i~vtd~~~~~~~~~~~~  190 (372)
                      .+++.+||+ |+++....     .++.++ .+|  ...+..............+++.+  ||+++++..           
T Consensus       262 ~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~-----------  330 (706)
T 2z3z_A          262 NLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSR-----------  330 (706)
T ss_dssp             EEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEEC-----------
T ss_pred             eEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEc-----------
Confidence            789999997 55544332     577888 555  33332221111111235788999  997555422           


Q ss_pred             ccccccCCCeEEEEeCCCCeEEEEeCCccCcce-EEEecCCCEEEEEeCCCC----eEEEEEccCCCCcceeeeccCCCC
Q 017371          191 DILEGKPHGQLLKYDPSSNITTLVADGFYFANG-VALSRDEDYVVVCESWKF----RCRKYWLKGERKGKLETFAENLPG  265 (372)
Q Consensus       191 ~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~g-i~~~~dg~~l~v~~~~~~----~i~~~~~~g~~~~~~~~~~~~~~g  265 (372)
                          .....+||.+|.+++..+.+..+...... +++++|++.+|++.....    .|++++.++.+   ...+. . .+
T Consensus       331 ----~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~---~~~l~-~-~~  401 (706)
T 2z3z_A          331 ----RDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK---TKDLT-P-ES  401 (706)
T ss_dssp             ----TTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC---CEESC-C-SS
T ss_pred             ----cCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC---ceecc-C-CC
Confidence                11346799999765655555433222233 689999999998877654    78888876543   22222 1 12


Q ss_pred             CCceeEEcCCCCEEEEE
Q 017371          266 APDNINLAPDGTFWIAI  282 (372)
Q Consensus       266 ~p~~i~~d~~G~lwva~  282 (372)
                      ....+++++||+.++..
T Consensus       402 ~~~~~~~spdg~~l~~~  418 (706)
T 2z3z_A          402 GMHRTQLSPDGSAIIDI  418 (706)
T ss_dssp             SEEEEEECTTSSEEEEE
T ss_pred             ceEEEEECCCCCEEEEE
Confidence            24567888999766554

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=98.53  E-value=6.2e-06  Score=81.53  Aligned_cols=178  Identities=13%  Similarity=0.037  Sum_probs=103.5

Q ss_pred             CccEEEcCCCcEEEEec---CC--eEEEEe---CCceEEEEecCCCcccCeEEcCCC--CEEEEeCCCcEEEEc-CCC-c
Q 017371           81 PEDASMDKNGVIYTATR---DG--WIKRLQ---DGTWVNWKFIDSQTLVGLTSTKEG--HLIICDNANGLHKVS-EDG-V  148 (372)
Q Consensus        81 p~~i~~d~~G~l~v~~~---~g--~i~~~~---~g~~~~~~~~~~~p~~gl~~d~dG--~l~v~~~~~gv~~~~-~~g-~  148 (372)
                      ..++++.++..+|+++.   +.  +|+.++   +|....+.. ..... ..++.+||  .+|++....++..++ .+| .
T Consensus        67 ~~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l~~-~~~~~-~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~  144 (582)
T 3o4h_A           67 VLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEA-VKPMR-ILSGVDTGEAVVFTGATEDRVALYALDGGGL  144 (582)
T ss_dssp             ECEECTTCSEEEEEEECSTTSCCEEEEEEETTSTTCCEECTT-SCSBE-EEEEEECSSCEEEEEECSSCEEEEEEETTEE
T ss_pred             cccccCCCCeEEEEeccCCCCcceEEEEEeccCCCccccccC-CCCce-eeeeCCCCCeEEEEecCCCCceEEEccCCcE
Confidence            34556666644455543   22  455565   233332211 12222 34555555  456655555666777 566 5


Q ss_pred             EEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEec
Q 017371          149 ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSR  228 (372)
Q Consensus       149 ~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~  228 (372)
                      +.+... +     . ..++++|||+.+++.+.             .......|+.+|.++++.+.+.......+.++|+|
T Consensus       145 ~~l~~~-~-----~-~~~~~spDG~~la~~~~-------------~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~Sp  204 (582)
T 3o4h_A          145 RELARL-P-----G-FGFVSDIRGDLIAGLGF-------------FGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISP  204 (582)
T ss_dssp             EEEEEE-S-----S-CEEEEEEETTEEEEEEE-------------EETTEEEEEEEETTTCCCEEECCSSCEEEEEEECT
T ss_pred             EEeecC-C-----C-ceEEECCCCCEEEEEEE-------------cCCCCeEEEEEcCCCCCceEeecCCCccccceECC
Confidence            444322 1     1 57889999986664221             01122569999998888877655444457899999


Q ss_pred             CCCEEEEEeCCC-CeEEEEEccCCCCcceeeeccCCCCCCceeE--------EcCCCCEEEEEec
Q 017371          229 DEDYVVVCESWK-FRCRKYWLKGERKGKLETFAENLPGAPDNIN--------LAPDGTFWIAIIK  284 (372)
Q Consensus       229 dg~~l~v~~~~~-~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~--------~d~~G~lwva~~~  284 (372)
                      ||+.++.++..+ ..|+.+++++.+   .. ........+.+++        +++||.++++...
T Consensus       205 DG~~l~~~~~~~~~~i~~~d~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~  265 (582)
T 3o4h_A          205 GMKVTAGLETAREARLVTVDPRDGS---VE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARR  265 (582)
T ss_dssp             TSCEEEEEECSSCEEEEEECTTTCC---EE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEE
T ss_pred             CCCEEEEccCCCeeEEEEEcCCCCc---EE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEc
Confidence            999988655433 379999887643   22 2222222234456        9999988887654

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=98.53  E-value=4.2e-05  Score=72.56  Aligned_cols=185  Identities=13%  Similarity=0.099  Sum_probs=113.0

Q ss_pred             CCCccEEEcCC-C-cEEEEecCCeEEEEe--C----------Cc-eEEEEecCCCcccCeEEcCCCC-EEEEeCC-CcEE
Q 017371           79 NHPEDASMDKN-G-VIYTATRDGWIKRLQ--D----------GT-WVNWKFIDSQTLVGLTSTKEGH-LIICDNA-NGLH  141 (372)
Q Consensus        79 ~~p~~i~~d~~-G-~l~v~~~~g~i~~~~--~----------g~-~~~~~~~~~~p~~gl~~d~dG~-l~v~~~~-~gv~  141 (372)
                      ..+.++++.++ + .+++++.+|.|..|+  .          .. ...+........ ++++.+++. ++++... ..|.
T Consensus       129 ~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~l~~~~~~~~~l~s~~~dg~i~  207 (430)
T 2xyi_A          129 GEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGY-GLSWNPNLNGYLLSASDDHTIC  207 (430)
T ss_dssp             SCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCC-CEEECTTSTTEEEEECTTSCEE
T ss_pred             CcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeE-EEEeCCCCCCeEEEEeCCCeEE
Confidence            46788999986 4 445556889999998  3          12 223333334456 999999887 6665444 4477


Q ss_pred             EEc-CCC---cEEEe--eecCCcccccccceEEcc-CCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCC----e
Q 017371          142 KVS-EDG---VENFL--SYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN----I  210 (372)
Q Consensus       142 ~~~-~~g---~~~l~--~~~~~~~~~~~~~l~~d~-dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~----~  210 (372)
                      .++ ..+   ...+.  ....+ ....+.++++.+ ++.++++..                 .++.|..+|..++    .
T Consensus       208 vwd~~~~~~~~~~~~~~~~~~~-h~~~v~~v~~~p~~~~~l~s~~-----------------~dg~i~i~d~~~~~~~~~  269 (430)
T 2xyi_A          208 LWDINATPKEHRVIDAKNIFTG-HTAVVEDVAWHLLHESLFGSVA-----------------DDQKLMIWDTRNNNTSKP  269 (430)
T ss_dssp             EEETTSCCBGGGEEECSEEECC-CSSCEEEEEECSSCTTEEEEEE-----------------TTSEEEEEETTCSCSSSC
T ss_pred             EEeCCCCCCCCceeccceeecC-CCCCEeeeEEeCCCCCEEEEEe-----------------CCCeEEEEECCCCCCCcc
Confidence            777 442   11111  11111 113567899988 567776633                 5688999998755    2


Q ss_pred             EEEEeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCC-EEEEEec
Q 017371          211 TTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIK  284 (372)
Q Consensus       211 ~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwva~~~  284 (372)
                      ...+...-...+.++++|++++++++...++.|..|++.... .....+. ...+....+++.++|. ++++...
T Consensus       270 ~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~-~~~~~~~-~h~~~v~~i~~sp~~~~~l~s~~~  342 (430)
T 2xyi_A          270 SHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK-LKLHSFE-SHKDEIFQVQWSPHNETILASSGT  342 (430)
T ss_dssp             SEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT-SCSEEEE-CCSSCEEEEEECSSCTTEEEEEET
T ss_pred             eeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC-CCeEEee-cCCCCEEEEEECCCCCCEEEEEeC
Confidence            222323334467899999998777777777889999986532 1122222 2233466788999984 5555543

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=98.49  E-value=2.8e-05  Score=70.86  Aligned_cols=184  Identities=9%  Similarity=0.034  Sum_probs=106.4

Q ss_pred             CCccEEEcCC----CcEEEEecCCeEEEEe--CCc--eEEEEecCCCcccCe------EEcCCCCEEEEeCC-CcEEEEc
Q 017371           80 HPEDASMDKN----GVIYTATRDGWIKRLQ--DGT--WVNWKFIDSQTLVGL------TSTKEGHLIICDNA-NGLHKVS  144 (372)
Q Consensus        80 ~p~~i~~d~~----G~l~v~~~~g~i~~~~--~g~--~~~~~~~~~~p~~gl------~~d~dG~l~v~~~~-~gv~~~~  144 (372)
                      ...++++.++    ..|+++..+|.|..|+  .++  ...+....+... .+      ++.++|+++++... ..+..++
T Consensus        67 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd  145 (357)
T 3i2n_A           67 PIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIIN-AIDGIGGLGIGEGAPEIVTGSRDGTVKVWD  145 (357)
T ss_dssp             CEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEE-EEEEESGGGCC-CCCEEEEEETTSCEEEEC
T ss_pred             cEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceE-EEeeccccccCCCccEEEEEeCCCeEEEEe
Confidence            4567888876    4677777899999999  443  334332223333 55      44678876665444 4477777


Q ss_pred             -CCC---cEEEeeecCCcccccccceE----EccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeC
Q 017371          145 -EDG---VENFLSYVNGSKLRFANDVV----EASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD  216 (372)
Q Consensus       145 -~~g---~~~l~~~~~~~~~~~~~~l~----~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~  216 (372)
                       .++   ...+.. ..+.....+..++    +.+++++.++-.                 .++.|..+|..+++......
T Consensus       146 ~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~l~~~~-----------------~d~~i~i~d~~~~~~~~~~~  207 (357)
T 3i2n_A          146 PRQKDDPVANMEP-VQGENKRDCWTVAFGNAYNQEERVVCAGY-----------------DNGDIKLFDLRNMALRWETN  207 (357)
T ss_dssp             TTSCSSCSEEECC-CTTSCCCCEEEEEEECCCC-CCCEEEEEE-----------------TTSEEEEEETTTTEEEEEEE
T ss_pred             CCCCCCcceeccc-cCCCCCCceEEEEEEeccCCCCCEEEEEc-----------------cCCeEEEEECccCceeeecC
Confidence             443   333321 1221112344555    567887666532                 46789999998887655443


Q ss_pred             CccCcceEEEec---CCCEEEEEeCCCCeEEEEEccCCCCcc-eeee-ccCCCCCCceeEEcCCCC-EEEEEe
Q 017371          217 GFYFANGVALSR---DEDYVVVCESWKFRCRKYWLKGERKGK-LETF-AENLPGAPDNINLAPDGT-FWIAII  283 (372)
Q Consensus       217 ~~~~~~gi~~~~---dg~~l~v~~~~~~~i~~~~~~g~~~~~-~~~~-~~~~~g~p~~i~~d~~G~-lwva~~  283 (372)
                      .......++++|   +++.++++. .++.|..|++...+... .... .....+....+++.++|. +.++..
T Consensus       208 ~~~~v~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  279 (357)
T 3i2n_A          208 IKNGVCSLEFDRKDISMNKLVATS-LEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAG  279 (357)
T ss_dssp             CSSCEEEEEESCSSSSCCEEEEEE-STTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEE
T ss_pred             CCCceEEEEcCCCCCCCCEEEEEC-CCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEe
Confidence            344556889999   888666664 56678888876432211 1100 012233456788899887 444433

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.48  E-value=1.3e-05  Score=74.54  Aligned_cols=153  Identities=8%  Similarity=-0.043  Sum_probs=90.9

Q ss_pred             cEEEcCCC-cEEEEecCCeEEEEe--CCceEEEEecCCC-cc-cCeEEcCCCCEEEEe----------------------
Q 017371           83 DASMDKNG-VIYTATRDGWIKRLQ--DGTWVNWKFIDSQ-TL-VGLTSTKEGHLIICD----------------------  135 (372)
Q Consensus        83 ~i~~d~~G-~l~v~~~~g~i~~~~--~g~~~~~~~~~~~-p~-~gl~~d~dG~l~v~~----------------------  135 (372)
                      ++++.++| .|+++..++.|+.++  +++.+.+...... .. ....++++|+++++.                      
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~  164 (388)
T 3pe7_A           85 GGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFT  164 (388)
T ss_dssp             SCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGG
T ss_pred             ceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhcc
Confidence            56888988 577777778899999  5555443332221 11 023347888876632                      


Q ss_pred             -CCCcEEEEc-CCC-cEEEeeecCCcccccccceEEcc-CCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCe
Q 017371          136 -NANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEAS-DGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI  210 (372)
Q Consensus       136 -~~~gv~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~d~-dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~  210 (372)
                       ....|+.++ .+| .+.+... .    ....++++.| ||+ |.++....            ......+|+.+|.++++
T Consensus       165 ~~~~~l~~~d~~~g~~~~l~~~-~----~~~~~~~~sp~dg~~l~~~~~~~------------~~~~~~~l~~~d~~~~~  227 (388)
T 3pe7_A          165 KPCCRLMRVDLKTGESTVILQE-N----QWLGHPIYRPYDDSTVAFCHEGP------------HDLVDARMWLINEDGTN  227 (388)
T ss_dssp             CCCEEEEEEETTTCCEEEEEEE-S----SCEEEEEEETTEEEEEEEEECSC------------TTTSSCSEEEEETTSCC
T ss_pred             CCcceEEEEECCCCceEEeecC-C----ccccccEECCCCCCEEEEEEecC------------CCCCcceEEEEeCCCCc
Confidence             113588888 666 5555332 1    2346788999 885 44432210            00124579999988776


Q ss_pred             EEEEeCCcc--CcceEEEecCCCEEEE-EeCCCC---eEEEEEccCCC
Q 017371          211 TTLVADGFY--FANGVALSRDEDYVVV-CESWKF---RCRKYWLKGER  252 (372)
Q Consensus       211 ~~~~~~~~~--~~~gi~~~~dg~~l~v-~~~~~~---~i~~~~~~g~~  252 (372)
                      .+.+.....  .....+|+|||+.|++ +...+.   .|+.+++++.+
T Consensus       228 ~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~  275 (388)
T 3pe7_A          228 MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLE  275 (388)
T ss_dssp             CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCC
T ss_pred             eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCc
Confidence            666544321  2335789999997754 443222   39999987643

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=98.48  E-value=8.2e-05  Score=69.59  Aligned_cols=182  Identities=10%  Similarity=-0.037  Sum_probs=112.4

Q ss_pred             CCCccEEEcC-CCc-EEEEecCCeEEEEe--CCc--------eEEEEecCCCcccCeEEcCCC-CEEEE-eCCCcEEEEc
Q 017371           79 NHPEDASMDK-NGV-IYTATRDGWIKRLQ--DGT--------WVNWKFIDSQTLVGLTSTKEG-HLIIC-DNANGLHKVS  144 (372)
Q Consensus        79 ~~p~~i~~d~-~G~-l~v~~~~g~i~~~~--~g~--------~~~~~~~~~~p~~gl~~d~dG-~l~v~-~~~~gv~~~~  144 (372)
                      ....++++.+ ++. |+++..+|.|..|+  ++.        ...+........ .+++.++| +++++ ..+..+..++
T Consensus        82 ~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~p~~~~~l~s~~~dg~i~iwd  160 (402)
T 2aq5_A           82 APVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVG-IVAWHPTAQNVLLSAGCDNVILVWD  160 (402)
T ss_dssp             SCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEE-EEEECSSBTTEEEEEETTSCEEEEE
T ss_pred             CCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEE-EEEECcCCCCEEEEEcCCCEEEEEE
Confidence            3456789988 775 55566899999998  432        233333334455 89999998 56555 4344577888


Q ss_pred             -CCC--cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEe-CCccC
Q 017371          145 -EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYF  220 (372)
Q Consensus       145 -~~g--~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~-~~~~~  220 (372)
                       .++  ...+..  .+ ....+..+++.++|+.+++-.                 .++.|..+|..+++..... .....
T Consensus       161 ~~~~~~~~~~~~--~~-~~~~v~~~~~~~~~~~l~~~~-----------------~d~~i~iwd~~~~~~~~~~~~~~~~  220 (402)
T 2aq5_A          161 VGTGAAVLTLGP--DV-HPDTIYSVDWSRDGALICTSC-----------------RDKRVRVIEPRKGTVVAEKDRPHEG  220 (402)
T ss_dssp             TTTTEEEEEECT--TT-CCSCEEEEEECTTSSCEEEEE-----------------TTSEEEEEETTTTEEEEEEECSSCS
T ss_pred             CCCCCccEEEec--CC-CCCceEEEEECCCCCEEEEEe-----------------cCCcEEEEeCCCCceeeeeccCCCC
Confidence             666  332310  11 113567899999997666522                 5678999999887765544 33322


Q ss_pred             --cceEEEecCCCEEEEEe--CCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEE
Q 017371          221 --ANGVALSRDEDYVVVCE--SWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAI  282 (372)
Q Consensus       221 --~~gi~~~~dg~~l~v~~--~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~  282 (372)
                        ...++++++++.++.+.  ..+..|..+++...+... .............++++++|++.+..
T Consensus       221 ~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~  285 (402)
T 2aq5_A          221 TRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPL-SLQELDTSSGVLLPFFDPDTNIVYLC  285 (402)
T ss_dssp             SSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCS-EEEECCCCSSCEEEEEETTTTEEEEE
T ss_pred             CcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCc-eEEeccCCCceeEEEEcCCCCEEEEE
Confidence              57789999987555442  456678888886543211 11111122336678899999866543

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=98.47  E-value=0.00016  Score=67.64  Aligned_cols=175  Identities=9%  Similarity=0.049  Sum_probs=110.4

Q ss_pred             CCccEEEcCCC-cEEEEecCCeEEEEe--CCc-eEEEEecCCCcccCeEEcCCCCEE-EEeCCCcEEEEc-CCC---cEE
Q 017371           80 HPEDASMDKNG-VIYTATRDGWIKRLQ--DGT-WVNWKFIDSQTLVGLTSTKEGHLI-ICDNANGLHKVS-EDG---VEN  150 (372)
Q Consensus        80 ~p~~i~~d~~G-~l~v~~~~g~i~~~~--~g~-~~~~~~~~~~p~~gl~~d~dG~l~-v~~~~~gv~~~~-~~g---~~~  150 (372)
                      ...++++.++| .|+++..+|.|..|+  +++ ...+....+... .+.++  ++++ .+.....+..++ ..+   ...
T Consensus       136 ~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~-~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~  212 (401)
T 4aez_A          136 YVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVG-CLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGT  212 (401)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE-EEEEE--TTEEEEEETTSEEEEEETTSSSCEEEE
T ss_pred             CEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceE-EEEEC--CCEEEEEcCCCCEEEEecccCcceeeE
Confidence            45678888888 455666899999998  444 333333333444 77774  4444 444444577777 423   222


Q ss_pred             EeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeC-CccCcceEEEecC
Q 017371          151 FLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-GFYFANGVALSRD  229 (372)
Q Consensus       151 l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~-~~~~~~gi~~~~d  229 (372)
                      +.. .    ...+..+++.++|+++++-.                 .++.|..+|..+++...... .......++++|+
T Consensus       213 ~~~-~----~~~v~~~~~~~~~~~l~s~~-----------------~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~  270 (401)
T 4aez_A          213 LQG-H----SSEVCGLAWRSDGLQLASGG-----------------NDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPW  270 (401)
T ss_dssp             EEC-C----SSCEEEEEECTTSSEEEEEE-----------------TTSCEEEEETTCSSEEEEECCCSSCCCEEEECTT
T ss_pred             EcC-C----CCCeeEEEEcCCCCEEEEEe-----------------CCCeEEEccCCCCCccEEecCCcceEEEEEECCC
Confidence            211 1    13567889999998777522                 46789999988766554443 3344578999999


Q ss_pred             CCEEEEEeC--CCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEe
Q 017371          230 EDYVVVCES--WKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII  283 (372)
Q Consensus       230 g~~l~v~~~--~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~  283 (372)
                      +..++++..  .+..|..+++...+.  ...+.  ..+....+++.++|.+.++..
T Consensus       271 ~~~ll~~~~gs~d~~i~i~d~~~~~~--~~~~~--~~~~v~~~~~s~~~~~l~~~~  322 (401)
T 4aez_A          271 QSNLLATGGGTMDKQIHFWNAATGAR--VNTVD--AGSQVTSLIWSPHSKEIMSTH  322 (401)
T ss_dssp             STTEEEEECCTTTCEEEEEETTTCCE--EEEEE--CSSCEEEEEECSSSSEEEEEE
T ss_pred             CCCEEEEecCCCCCEEEEEECCCCCE--EEEEe--CCCcEEEEEECCCCCeEEEEe
Confidence            887888754  567888888764321  12221  223467788999998777754

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=98.47  E-value=9.3e-06  Score=82.17  Aligned_cols=136  Identities=9%  Similarity=-0.043  Sum_probs=86.1

Q ss_pred             CCccEEEcCCCcEEEEecCCeEEEEe--CCceEEEEecCC----CcccCeEEcCCCCEEEEe-CC---------CcEEEE
Q 017371           80 HPEDASMDKNGVIYTATRDGWIKRLQ--DGTWVNWKFIDS----QTLVGLTSTKEGHLIICD-NA---------NGLHKV  143 (372)
Q Consensus        80 ~p~~i~~d~~G~l~v~~~~g~i~~~~--~g~~~~~~~~~~----~p~~gl~~d~dG~l~v~~-~~---------~gv~~~  143 (372)
                      .+.++++.++|.++.++.+|.|+.++  +|+.........    ... .+++.|||+..+.. ..         ..++.+
T Consensus        18 ~~~~~~~spdg~~~~~~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~-~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~   96 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAI-RYEISPDREYALFSYNVEPIYQHSYTGYYVLS   96 (723)
T ss_dssp             CCCCCCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCS-EEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred             cccccEEcCCCcEEEEeCCCCEEEEECCCCcEEEEeccccccccccc-eEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence            46778888899865556788899998  566555443322    255 89999999844432 21         346677


Q ss_pred             c-CCC-cEEEeeecCCcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCcc-
Q 017371          144 S-EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFY-  219 (372)
Q Consensus       144 ~-~~g-~~~l~~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~-  219 (372)
                      + .+| .+.+... .+ ....+..+++.|||+ |.++                   ..+.|+.+|.++++...+..... 
T Consensus        97 d~~~~~~~~l~~~-~~-~~~~~~~~~~SPdG~~la~~-------------------~~~~i~~~~~~~g~~~~~~~~~~~  155 (723)
T 1xfd_A           97 KIPHGDPQSLDPP-EV-SNAKLQYAGWGPKGQQLIFI-------------------FENNIYYCAHVGKQAIRVVSTGKE  155 (723)
T ss_dssp             ESSSCCCEECCCT-TC-CSCCCSBCCBCSSTTCEEEE-------------------ETTEEEEESSSSSCCEEEECCCBT
T ss_pred             ECCCCceEeccCC-cc-ccccccccEECCCCCEEEEE-------------------ECCeEEEEECCCCceEEEecCCCC
Confidence            7 555 5333221 11 111256788999995 4443                   12579999988777665543311 


Q ss_pred             ------------------CcceEEEecCCCEEEEEe
Q 017371          220 ------------------FANGVALSRDEDYVVVCE  237 (372)
Q Consensus       220 ------------------~~~gi~~~~dg~~l~v~~  237 (372)
                                        ...+++|+|||+.|+++.
T Consensus       156 ~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~  191 (723)
T 1xfd_A          156 GVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAA  191 (723)
T ss_dssp             TTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEE
T ss_pred             CceECcccceeEEEEeccCcceEEECCCCCEEEEEE
Confidence                              125799999999888765

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=98.46  E-value=3.4e-05  Score=69.97  Aligned_cols=180  Identities=10%  Similarity=0.001  Sum_probs=105.2

Q ss_pred             CCCccEEEcCCCc-EEEEecCCeEEEEe--CCc----eEEEEecCCCcccCeEEcCCCC-EEE-EeCCCcEEEEcC-CC-
Q 017371           79 NHPEDASMDKNGV-IYTATRDGWIKRLQ--DGT----WVNWKFIDSQTLVGLTSTKEGH-LII-CDNANGLHKVSE-DG-  147 (372)
Q Consensus        79 ~~p~~i~~d~~G~-l~v~~~~g~i~~~~--~g~----~~~~~~~~~~p~~gl~~d~dG~-l~v-~~~~~gv~~~~~-~g-  147 (372)
                      ....++++.++|. |+++..+|.|..|+  .++    ............ .+++.++|+ +++ +.....+..++. +. 
T Consensus        12 ~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~   90 (342)
T 1yfq_A           12 DYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLL-CCNFIDNTDLQIYVGTVQGEILKVDLIGSP   90 (342)
T ss_dssp             SCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEE-EEEEEESSSEEEEEEETTSCEEEECSSSSS
T ss_pred             CcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceE-EEEECCCCCcEEEEEcCCCeEEEEEeccCC
Confidence            3566788888875 66667899999888  444    333333334455 899999998 444 444445777774 44 


Q ss_pred             -cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCC---------CeEEEEeCC
Q 017371          148 -VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS---------NITTLVADG  217 (372)
Q Consensus       148 -~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t---------~~~~~~~~~  217 (372)
                       ...+...   .....+..+++.+ ++.+++-.                 .++.|..+|..+         ++.......
T Consensus        91 ~~~~~~~~---~~~~~v~~l~~~~-~~~l~s~~-----------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  149 (342)
T 1yfq_A           91 SFQALTNN---EANLGICRICKYG-DDKLIAAS-----------------WDGLIEVIDPRNYGDGVIAVKNLNSNNTKV  149 (342)
T ss_dssp             SEEECBSC---CCCSCEEEEEEET-TTEEEEEE-----------------TTSEEEEECHHHHTTBCEEEEESCSSSSSS
T ss_pred             ceEecccc---CCCCceEEEEeCC-CCEEEEEc-----------------CCCeEEEEcccccccccccccCCeeeEEee
Confidence             3222110   0113466788888 76666522                 467788887653         221111112


Q ss_pred             ccCcceEEEecCCCEEEEEeCCCCeEEEEEccC-CCCcceeeeccCCCCCCceeEEcC-CCCEEEEEec
Q 017371          218 FYFANGVALSRDEDYVVVCESWKFRCRKYWLKG-ERKGKLETFAENLPGAPDNINLAP-DGTFWIAIIK  284 (372)
Q Consensus       218 ~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g-~~~~~~~~~~~~~~g~p~~i~~d~-~G~lwva~~~  284 (372)
                      -.....+++++++  ++++ +.+..|..|++.. ...... ............+++.+ +|++.++...
T Consensus       150 ~~~v~~~~~~~~~--l~~~-~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~i~~i~~~~~~~~~l~~~~~  214 (342)
T 1yfq_A          150 KNKIFTMDTNSSR--LIVG-MNNSQVQWFRLPLCEDDNGT-IEESGLKYQIRDVALLPKEQEGYACSSI  214 (342)
T ss_dssp             CCCEEEEEECSSE--EEEE-ESTTEEEEEESSCCTTCCCE-EEECSCSSCEEEEEECSGGGCEEEEEET
T ss_pred             CCceEEEEecCCc--EEEE-eCCCeEEEEECCccccccce-eeecCCCCceeEEEECCCCCCEEEEEec
Confidence            2234567888776  5544 4566899998865 322111 11112333467788999 8887666554

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=98.45  E-value=2.1e-05  Score=74.66  Aligned_cols=185  Identities=10%  Similarity=0.009  Sum_probs=110.5

Q ss_pred             CCccEEEcC-CC-cEEEEecCCeEEEEe--CCceEEEEec---CCCcccCeEEcC-CCCEEEEeCCC-cEEEEc-CCC-c
Q 017371           80 HPEDASMDK-NG-VIYTATRDGWIKRLQ--DGTWVNWKFI---DSQTLVGLTSTK-EGHLIICDNAN-GLHKVS-EDG-V  148 (372)
Q Consensus        80 ~p~~i~~d~-~G-~l~v~~~~g~i~~~~--~g~~~~~~~~---~~~p~~gl~~d~-dG~l~v~~~~~-gv~~~~-~~g-~  148 (372)
                      ...+|++.| ++ .|.+|+.+|.|..|+  .++.......   .+... +|++.| +++++++.... -|..+| ..+ .
T Consensus       121 ~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~-~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~  199 (435)
T 4e54_B          121 RATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSIT-GLKFNPLNTNQFYASSMEGTTRLQDFKGNIL  199 (435)
T ss_dssp             CEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCC-EEEECSSCTTEEEEECSSSCEEEEETTSCEE
T ss_pred             CEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEE-EEEEeCCCCCEEEEEeCCCEEEEeeccCCce
Confidence            456799986 44 466788999999998  4443332221   23345 899996 67766665443 477777 545 4


Q ss_pred             EEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEec
Q 017371          149 ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSR  228 (372)
Q Consensus       149 ~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~  228 (372)
                      ..+.....  .......++++++|++.++-                 ..+|.|..+|..++....+...-..-+.++++|
T Consensus       200 ~~~~~~~~--~~~~~~~~~~~~~~~~l~~g-----------------~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p  260 (435)
T 4e54_B          200 RVFASSDT--INIWFCSLDVSASSRMVVTG-----------------DNVGNVILLNMDGKELWNLRMHKKKVTHVALNP  260 (435)
T ss_dssp             EEEECCSS--CSCCCCCEEEETTTTEEEEE-----------------CSSSBEEEEESSSCBCCCSBCCSSCEEEEEECT
T ss_pred             eEEeccCC--CCccEEEEEECCCCCEEEEE-----------------eCCCcEeeeccCcceeEEEecccceEEeeeecC
Confidence            44432211  11234578899999877753                 256788889887544332222222346789999


Q ss_pred             CCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 017371          229 DEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       229 dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~  284 (372)
                      +++.++++...+..|..+++...+.................++++++|++.++...
T Consensus       261 ~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~  316 (435)
T 4e54_B          261 CCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQ  316 (435)
T ss_dssp             TCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEES
T ss_pred             CCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcC
Confidence            98877777666677878887643211110111111222456778889987666544

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=98.44  E-value=9.8e-05  Score=67.77  Aligned_cols=182  Identities=10%  Similarity=0.069  Sum_probs=105.8

Q ss_pred             CccEEEcCCCc-EEEEecCCeEEEEe--CCceE-E--EEecC-CCcccCeEEcCCCCEEEEeCC-CcEEEEc-CCC-cEE
Q 017371           81 PEDASMDKNGV-IYTATRDGWIKRLQ--DGTWV-N--WKFID-SQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG-VEN  150 (372)
Q Consensus        81 p~~i~~d~~G~-l~v~~~~g~i~~~~--~g~~~-~--~~~~~-~~p~~gl~~d~dG~l~v~~~~-~gv~~~~-~~g-~~~  150 (372)
                      ...+++.++|. |..+..+|.|..|+  +++.. .  ..... .... .+++.|+|+++++... ..+..++ ..+ .+.
T Consensus        19 v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~-~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~   97 (345)
T 3fm0_A           19 CWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVR-KVAWSPCGNYLASASFDATTCIWKKNQDDFEC   97 (345)
T ss_dssp             EEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEE-EEEECTTSSEEEEEETTSCEEEEEECCC-EEE
T ss_pred             EEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEE-EEEECCCCCEEEEEECCCcEEEEEccCCCeEE
Confidence            45789999986 45566899999888  44432 1  11112 2345 8999999986666444 4466666 444 332


Q ss_pred             EeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCe-EEE--EeCC-ccCcceEEE
Q 017371          151 FLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI-TTL--VADG-FYFANGVAL  226 (372)
Q Consensus       151 l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~-~~~--~~~~-~~~~~gi~~  226 (372)
                      +.. ..+. ...+..+++.++|++.++-+                 .++.|..+|..+++ .+.  .... ......+++
T Consensus        98 ~~~-~~~h-~~~v~~v~~sp~~~~l~s~s-----------------~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~  158 (345)
T 3fm0_A           98 VTT-LEGH-ENEVKSVAWAPSGNLLATCS-----------------RDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVW  158 (345)
T ss_dssp             EEE-ECCC-SSCEEEEEECTTSSEEEEEE-----------------TTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEE
T ss_pred             EEE-ccCC-CCCceEEEEeCCCCEEEEEE-----------------CCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEE
Confidence            221 1221 13567899999998777632                 45667777765442 111  2222 233457889


Q ss_pred             ecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 017371          227 SRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       227 ~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~  284 (372)
                      +|+++.+..+. .+..|..++...........+. ...+....++++++|++.++...
T Consensus       159 ~p~~~~l~s~s-~d~~i~~w~~~~~~~~~~~~~~-~h~~~v~~l~~sp~g~~l~s~s~  214 (345)
T 3fm0_A          159 HPSQELLASAS-YDDTVKLYREEEDDWVCCATLE-GHESTVWSLAFDPSGQRLASCSD  214 (345)
T ss_dssp             CSSSSCEEEEE-TTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECTTSSEEEEEET
T ss_pred             CCCCCEEEEEe-CCCcEEEEEecCCCEEEEEEec-CCCCceEEEEECCCCCEEEEEeC
Confidence            99998555544 4566777776542111111221 22334567889999987766544

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=98.44  E-value=1.6e-06  Score=83.90  Aligned_cols=75  Identities=17%  Similarity=0.165  Sum_probs=57.8

Q ss_pred             cccccccceEEccCCcEEE-EeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCC--ccCcceEEEecCCCEEE
Q 017371          158 SKLRFANDVVEASDGSLYF-TVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG--FYFANGVALSRDEDYVV  234 (372)
Q Consensus       158 ~~~~~~~~l~~d~dG~i~v-td~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~--~~~~~gi~~~~dg~~l~  234 (372)
                      ..+..|++|++|++|+||| +|.+  |+...    ..+......||++++++|+++.++..  ...++|++|+||++.||
T Consensus       473 ~~fnsPDnL~fd~~G~LWf~TD~~--~~~~g----~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLf  546 (592)
T 4a9v_A          473 NMFNSPDGLGFDKAGRLWILTDGD--SSNAG----DFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLF  546 (592)
T ss_dssp             TCCCCEEEEEECTTCCEEEEECCC--CCCSG----GGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEE
T ss_pred             CccCCCCceEECCCCCEEEEeCCC--cCccc----cccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEE
Confidence            4578999999999999999 7764  22111    12233566899999999999988754  35689999999999999


Q ss_pred             EEeC
Q 017371          235 VCES  238 (372)
Q Consensus       235 v~~~  238 (372)
                      |+..
T Consensus       547 V~vQ  550 (592)
T 4a9v_A          547 VGIQ  550 (592)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9753

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=98.42  E-value=0.00053  Score=64.08  Aligned_cols=170  Identities=8%  Similarity=-0.055  Sum_probs=101.3

Q ss_pred             cEEEcCCCcEEEEecCCeEEEEe--CCceEEEEec--CCCcccCeEEcCCCCEEEEeCC-CcEEEEc-CCC--cEEEeee
Q 017371           83 DASMDKNGVIYTATRDGWIKRLQ--DGTWVNWKFI--DSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG--VENFLSY  154 (372)
Q Consensus        83 ~i~~d~~G~l~v~~~~g~i~~~~--~g~~~~~~~~--~~~p~~gl~~d~dG~l~v~~~~-~gv~~~~-~~g--~~~l~~~  154 (372)
                      .+..++ +.+.++..+|.|+.|+  +++.......  .+... .+++.++|+++++... ..+..++ .++  ...+...
T Consensus        98 ~~~~s~-~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~-~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  175 (401)
T 4aez_A           98 LLDWSN-LNVVAVALERNVYVWNADSGSVSALAETDESTYVA-SVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGH  175 (401)
T ss_dssp             CEEECT-TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEE-EEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred             EEeecC-CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEE-EEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCC
Confidence            355554 5677888899999999  5655443332  23345 8999999976655443 4477777 555  3333211


Q ss_pred             cCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCC-Ce-EEEEeCCccCcceEEEecCCCE
Q 017371          155 VNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS-NI-TTLVADGFYFANGVALSRDEDY  232 (372)
Q Consensus       155 ~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t-~~-~~~~~~~~~~~~gi~~~~dg~~  232 (372)
                           ...+..+++  ++++.++-                 ..++.|..+|..+ +. ...+.........++++++++.
T Consensus       176 -----~~~v~~~~~--~~~~l~~~-----------------~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  231 (401)
T 4aez_A          176 -----QARVGCLSW--NRHVLSSG-----------------SRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQ  231 (401)
T ss_dssp             -----SSCEEEEEE--ETTEEEEE-----------------ETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSE
T ss_pred             -----CCceEEEEE--CCCEEEEE-----------------cCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCE
Confidence                 123455666  34454442                 2567888888763 22 3333333344567899999986


Q ss_pred             EEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCC-EEEEE
Q 017371          233 VVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAI  282 (372)
Q Consensus       233 l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwva~  282 (372)
                      ++.+. .++.|..+++...+  ....+. ...+....+++.++|. +.++.
T Consensus       232 l~s~~-~d~~v~iwd~~~~~--~~~~~~-~~~~~v~~~~~~p~~~~ll~~~  278 (401)
T 4aez_A          232 LASGG-NDNVVQIWDARSSI--PKFTKT-NHNAAVKAVAWCPWQSNLLATG  278 (401)
T ss_dssp             EEEEE-TTSCEEEEETTCSS--EEEEEC-CCSSCCCEEEECTTSTTEEEEE
T ss_pred             EEEEe-CCCeEEEccCCCCC--ccEEec-CCcceEEEEEECCCCCCEEEEe
Confidence            66655 45678888886432  111222 2334467899999874 55544

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=98.42  E-value=0.00011  Score=68.08  Aligned_cols=266  Identities=13%  Similarity=0.054  Sum_probs=138.2

Q ss_pred             CCCCCCCccEEEcC-CCc-EEEEecCCeEEEEe--CCce-EEEE-------------ecCCCcccCeEEcC-CCCEEEEe
Q 017371           75 EGSVNHPEDASMDK-NGV-IYTATRDGWIKRLQ--DGTW-VNWK-------------FIDSQTLVGLTSTK-EGHLIICD  135 (372)
Q Consensus        75 ~g~~~~p~~i~~d~-~G~-l~v~~~~g~i~~~~--~g~~-~~~~-------------~~~~~p~~gl~~d~-dG~l~v~~  135 (372)
                      .+.-....++++.+ +|. |++++.+|.|..|+  +++. ..+.             ...+... .+++.+ +++++++.
T Consensus        40 ~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~s~  118 (408)
T 4a11_B           40 RIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVE-TVQWYPHDTGMFTSS  118 (408)
T ss_dssp             CCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEE-EEEECTTCTTCEEEE
T ss_pred             eccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEE-EEEEccCCCcEEEEE
Confidence            33334567899998 775 55566899999998  3321 1111             0223345 889998 66555554


Q ss_pred             C-CCcEEEEc-CCC--cEEEeeecCCcccccccceEEcc---CCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCC
Q 017371          136 N-ANGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEAS---DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS  208 (372)
Q Consensus       136 ~-~~gv~~~~-~~g--~~~l~~~~~~~~~~~~~~l~~d~---dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t  208 (372)
                      . ...+..++ .++  ...+.  ..    .....+.+.+   ++.+.++-                 ..++.|..+|..+
T Consensus       119 ~~d~~i~iwd~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~v~~~d~~~  175 (408)
T 4a11_B          119 SFDKTLKVWDTNTLQTADVFN--FE----ETVYSHHMSPVSTKHCLVAVG-----------------TRGPKVQLCDLKS  175 (408)
T ss_dssp             ETTSEEEEEETTTTEEEEEEE--CS----SCEEEEEECSSCSSCCEEEEE-----------------ESSSSEEEEESSS
T ss_pred             eCCCeEEEeeCCCCccceecc--CC----CceeeeEeecCCCCCcEEEEE-----------------cCCCeEEEEeCCC
Confidence            3 44477777 555  22221  11    1233455554   34455542                 2467788888876


Q ss_pred             CeEEEEeCC-ccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeee-----------c---cCCCCCCceeEEc
Q 017371          209 NITTLVADG-FYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETF-----------A---ENLPGAPDNINLA  273 (372)
Q Consensus       209 ~~~~~~~~~-~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~-----------~---~~~~g~p~~i~~d  273 (372)
                      ++....... ......++++|++++++++...++.|..+++...... ...+           .   ....+....+++.
T Consensus       176 ~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  254 (408)
T 4a11_B          176 GSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGC-LITLDQHNGKKSQAVESANTAHNGKVNGLCFT  254 (408)
T ss_dssp             SCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCC-SEECCTTTTCSCCCTTTSSCSCSSCEEEEEEC
T ss_pred             cceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcc-cccccccccccceeeccccccccCceeEEEEc
Confidence            654443333 2334678999999876666666777888888643211 0111           0   1122235568889


Q ss_pred             CCCCEEEEEec-CchhHHHHhhcchhHHHHHHh----cCccc---------cccccCCCceEEEEEC-CCCcEEEEEECC
Q 017371          274 PDGTFWIAIIK-LDARRMKILNSSKLIKHVLAA----YPKLF---------SQFITLGGGAHLIHVA-EDGTIIRNLVDP  338 (372)
Q Consensus       274 ~~G~lwva~~~-~~~~~~~~~~~~~~~r~~~~~----~p~~~---------~~~~~~~~~~~v~~~~-~~g~~~~~~~~~  338 (372)
                      ++|++.++... ....++++-..... ......    .....         ..+......+.+..++ .+++.+..+...
T Consensus       255 ~~~~~l~~~~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~  333 (408)
T 4a11_B          255 SDGLHLLTVGTDNRMRLWNSSNGENT-LVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGH  333 (408)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTCCBC-CCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCC
T ss_pred             CCCCEEEEecCCCeEEEEECCCCccc-eeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccC
Confidence            99976555443 23333333211110 000000    00000         0011122344555565 456666666543


Q ss_pred             CCCeeccceeeEEE-CC-EEEEEeCCCCeEEEEeC
Q 017371          339 TGQLMSFVTSGLQV-DN-HLYVISLTSNFIGKVQL  371 (372)
Q Consensus       339 ~g~~~~~~t~~~~~-~g-~L~igs~~~~~i~~~~~  371 (372)
                      .+    .++++... ++ .|+.++ ....|.++++
T Consensus       334 ~~----~v~~~~~s~~~~~l~s~~-~dg~i~iw~~  363 (408)
T 4a11_B          334 YK----TVDCCVFQSNFQELYSGS-RDCNILAWVP  363 (408)
T ss_dssp             SS----CEEEEEEETTTTEEEEEE-TTSCEEEEEE
T ss_pred             CC----eEEEEEEcCCCCEEEEEC-CCCeEEEEeC
Confidence            32    46777776 34 455555 4456777664

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=98.42  E-value=6.7e-05  Score=69.71  Aligned_cols=190  Identities=9%  Similarity=0.061  Sum_probs=121.7

Q ss_pred             CCCCCccEEEcCCCcEEEEecC----------------CeEEEEe--CC--c-eEEEEec------CCCcccCeEEc-C-
Q 017371           77 SVNHPEDASMDKNGVIYTATRD----------------GWIKRLQ--DG--T-WVNWKFI------DSQTLVGLTST-K-  127 (372)
Q Consensus        77 ~~~~p~~i~~d~~G~l~v~~~~----------------g~i~~~~--~g--~-~~~~~~~------~~~p~~gl~~d-~-  127 (372)
                      .+..+..+.+|+.|+||+-|..                -+|+.||  ++  + ++++..+      ..... .+++| . 
T Consensus        85 ~lvsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~-di~VD~~~  163 (381)
T 3q6k_A           85 ELTSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFG-GFAVDVAN  163 (381)
T ss_dssp             SSSCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEE-EEEEEESC
T ss_pred             ceEEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccc-eEEEeccc
Confidence            3778889999999999998821                1588898  44  3 4444332      12334 78888 2 


Q ss_pred             ------CCCEEEEeCC-CcEEEEc-CCC--cEEEeee----------cCCccc---ccccceEEccC----C-cEEEEeC
Q 017371          128 ------EGHLIICDNA-NGLHKVS-EDG--VENFLSY----------VNGSKL---RFANDVVEASD----G-SLYFTVS  179 (372)
Q Consensus       128 ------dG~l~v~~~~-~gv~~~~-~~g--~~~l~~~----------~~~~~~---~~~~~l~~d~d----G-~i~vtd~  179 (372)
                            ++.+||+|.. .||+++| .+|  .+.+...          ..|..+   ..+.+|+.+++    + .+|+.-.
T Consensus       164 ~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~pl  243 (381)
T 3q6k_A          164 PKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAG  243 (381)
T ss_dssp             TTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEES
T ss_pred             CCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEEC
Confidence                  4569999975 6899999 777  5554211          112222   35678888876    3 6888754


Q ss_pred             CCCCCCcccccccccccCCCeEEEEeC------C-CCeEEEEeCCccCcc--eEEEecCCCEEEEEeCCCCeEEEEEccC
Q 017371          180 SSKYLPHEYCLDILEGKPHGQLLKYDP------S-SNITTLVADGFYFAN--GVALSRDEDYVVVCESWKFRCRKYWLKG  250 (372)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~g~v~~~d~------~-t~~~~~~~~~~~~~~--gi~~~~dg~~l~v~~~~~~~i~~~~~~g  250 (372)
                      +                 ..++|++..      . ..+++.+.+......  +.++++..+.||+++...+.|.+++.++
T Consensus       244 s-----------------s~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~  306 (381)
T 3q6k_A          244 S-----------------AIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQK  306 (381)
T ss_dssp             S-----------------CSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred             C-----------------CCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence            2                 335777641      1 134444433322234  4566633446999999999999999876


Q ss_pred             -CC-CcceeeeccC-CCCCCceeEEcCCCCEEEEEec
Q 017371          251 -ER-KGKLETFAEN-LPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       251 -~~-~~~~~~~~~~-~~g~p~~i~~d~~G~lwva~~~  284 (372)
                       +- ....+.+... .--+|+++.+|.+|+||+....
T Consensus       307 ~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn~  343 (381)
T 3q6k_A          307 MPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSNG  343 (381)
T ss_dssp             CSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEECS
T ss_pred             CccccCceEEEEECCCccccCeEEECCCCeEEEEECc
Confidence             31 1333444332 2247999999999999999865

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=98.40  E-value=0.0004  Score=70.03  Aligned_cols=182  Identities=11%  Similarity=0.092  Sum_probs=110.7

Q ss_pred             CCCccEEEcCCCcE-EEEecCCeEEEEe--CCce-EEEEecCCCcccCeEEcCCCCEEEEeCC-CcEEEEcCCC--cEEE
Q 017371           79 NHPEDASMDKNGVI-YTATRDGWIKRLQ--DGTW-VNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVSEDG--VENF  151 (372)
Q Consensus        79 ~~p~~i~~d~~G~l-~v~~~~g~i~~~~--~g~~-~~~~~~~~~p~~gl~~d~dG~l~v~~~~-~gv~~~~~~g--~~~l  151 (372)
                      ....++++.++|.+ ..++.+|.|..|+  +++. ..+....+... ++++.++|+.+++... ..+..++..+  ...+
T Consensus       431 ~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~-~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~  509 (694)
T 3dm0_A          431 HFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVL-SVAFSLDNRQIVSASRDRTIKLWNTLGECKYTI  509 (694)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE-EEEECTTSSCEEEEETTSCEEEECTTSCEEEEE
T ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEE-EEEEeCCCCEEEEEeCCCEEEEEECCCCcceee
Confidence            34567889998864 4556899999999  4543 33333334455 8999999976555443 4577777333  2222


Q ss_pred             eeecCCcccccccceEEccCC--cEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCc-cCcceEEEec
Q 017371          152 LSYVNGSKLRFANDVVEASDG--SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF-YFANGVALSR  228 (372)
Q Consensus       152 ~~~~~~~~~~~~~~l~~d~dG--~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~-~~~~gi~~~~  228 (372)
                      .....+ ....+..+++.+++  ...++-                 ..++.|..+|..+++......+. .....++++|
T Consensus       510 ~~~~~~-h~~~v~~~~~~~~~~~~~l~s~-----------------s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp  571 (694)
T 3dm0_A          510 SEGGEG-HRDWVSCVRFSPNTLQPTIVSA-----------------SWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSP  571 (694)
T ss_dssp             CSSTTS-CSSCEEEEEECSCSSSCEEEEE-----------------ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT
T ss_pred             ccCCCC-CCCcEEEEEEeCCCCcceEEEE-----------------eCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeC
Confidence            221111 11245678888876  344442                 25677888898877765544443 3346789999


Q ss_pred             CCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 017371          229 DEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       229 dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~  284 (372)
                      |++.+. +.+.++.|..+++...+   . ...-........+++.++|.+.++...
T Consensus       572 dg~~l~-sg~~Dg~i~iwd~~~~~---~-~~~~~~~~~v~~~~~sp~~~~l~~~~~  622 (694)
T 3dm0_A          572 DGSLCA-SGGKDGVVLLWDLAEGK---K-LYSLEANSVIHALCFSPNRYWLCAATE  622 (694)
T ss_dssp             TSSEEE-EEETTSBCEEEETTTTE---E-EECCBCSSCEEEEEECSSSSEEEEEET
T ss_pred             CCCEEE-EEeCCCeEEEEECCCCc---e-EEEecCCCcEEEEEEcCCCcEEEEEcC
Confidence            998554 44456678888875431   1 111112234567889999887776654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=98.40  E-value=8.6e-05  Score=75.96  Aligned_cols=179  Identities=11%  Similarity=0.068  Sum_probs=109.5

Q ss_pred             CCccEEEcCCCc-EEEEecCCeEEEEe--CCce-EEEEecCCCcccCeEEcCCCCEEEE-eCCCcEEEEc-CCC--cEEE
Q 017371           80 HPEDASMDKNGV-IYTATRDGWIKRLQ--DGTW-VNWKFIDSQTLVGLTSTKEGHLIIC-DNANGLHKVS-EDG--VENF  151 (372)
Q Consensus        80 ~p~~i~~d~~G~-l~v~~~~g~i~~~~--~g~~-~~~~~~~~~p~~gl~~d~dG~l~v~-~~~~gv~~~~-~~g--~~~l  151 (372)
                      ...++++.++|. |.+++.+|.|..|+  +++. ..+....+... .+++.++|..+++ .....+..++ .++  ....
T Consensus        57 ~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~  135 (814)
T 3mkq_A           57 PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIR-SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT  135 (814)
T ss_dssp             CEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE-EEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEE
T ss_pred             cEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEE-EEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEE
Confidence            466788998885 66677899999999  5543 33333334456 8999999975554 4334466677 444  2111


Q ss_pred             eeecCCcccccccceEEcc-CCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEE-eCCc-cCcceEEEec
Q 017371          152 LSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-ADGF-YFANGVALSR  228 (372)
Q Consensus       152 ~~~~~~~~~~~~~~l~~d~-dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~-~~~~-~~~~gi~~~~  228 (372)
                      .....    ..+..+++.+ +|+.+++-.                 .++.|..+|..+++.... .... ...+.+++++
T Consensus       136 ~~~~~----~~v~~~~~~p~~~~~l~~~~-----------------~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~  194 (814)
T 3mkq_A          136 FEGHE----HFVMCVAFNPKDPSTFASGC-----------------LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYP  194 (814)
T ss_dssp             EECCS----SCEEEEEEETTEEEEEEEEE-----------------TTSEEEEEETTCSSCSEEEECCCTTCCCEEEECC
T ss_pred             EcCCC----CcEEEEEEEcCCCCEEEEEe-----------------CCCeEEEEECCCCcceeEEecCCCCCEEEEEEEE
Confidence            11111    2456788988 776666522                 467888898765543332 2222 4456788998


Q ss_pred             --CCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 017371          229 --DEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       229 --dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~  284 (372)
                        +++.++.+ ..++.|..+++...+  ....+. ...+....+++.++|++.++...
T Consensus       195 ~~~~~~l~~~-~~dg~i~~~d~~~~~--~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~  248 (814)
T 3mkq_A          195 LPDKPYMITA-SDDLTIKIWDYQTKS--CVATLE-GHMSNVSFAVFHPTLPIIISGSE  248 (814)
T ss_dssp             STTCCEEEEE-CTTSEEEEEETTTTE--EEEEEE-CCSSCEEEEEECSSSSEEEEEET
T ss_pred             CCCCCEEEEE-eCCCEEEEEECCCCc--EEEEEc-CCCCCEEEEEEcCCCCEEEEEeC
Confidence              88855554 456688888875432  122222 22233567888999986666554

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=98.40  E-value=9.1e-05  Score=67.89  Aligned_cols=182  Identities=9%  Similarity=-0.066  Sum_probs=109.1

Q ss_pred             CCCccEEEcCCCc-EEEEecCCeEEEEe--CCceEEEE---ecCCCcccCeEEcCCCCEEEEeCC-CcEEEEc-CCC--c
Q 017371           79 NHPEDASMDKNGV-IYTATRDGWIKRLQ--DGTWVNWK---FIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG--V  148 (372)
Q Consensus        79 ~~p~~i~~d~~G~-l~v~~~~g~i~~~~--~g~~~~~~---~~~~~p~~gl~~d~dG~l~v~~~~-~gv~~~~-~~g--~  148 (372)
                      ....++++.++|. |+++..+|.|..|+  +++.....   ....... .+++.++|+++++... ..+..++ ..+  .
T Consensus        53 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~  131 (372)
T 1k8k_C           53 GQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAAR-CVRWAPNEKKFAVGSGSRVISICYFEQENDW  131 (372)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEE-EEEECTTSSEEEEEETTSSEEEEEEETTTTE
T ss_pred             CcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCcee-EEEECCCCCEEEEEeCCCEEEEEEecCCCcc
Confidence            3567899998885 55566889999998  55533222   1223445 8999999976655433 4466666 333  2


Q ss_pred             EEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCC------------------CCe
Q 017371          149 ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS------------------SNI  210 (372)
Q Consensus       149 ~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~------------------t~~  210 (372)
                      ...... .......+..+++.++|+.+++-.                 .++.|..+|..                  +++
T Consensus       132 ~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~-----------------~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~  193 (372)
T 1k8k_C          132 WVCKHI-KKPIRSTVLSLDWHPNSVLLAAGS-----------------CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGE  193 (372)
T ss_dssp             EEEEEE-CTTCCSCEEEEEECTTSSEEEEEE-----------------TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTC
T ss_pred             eeeeee-ecccCCCeeEEEEcCCCCEEEEEc-----------------CCCCEEEEEcccccccccccccccccccchhh
Confidence            222211 111123567899999998766532                 45677778732                  344


Q ss_pred             EEEEeC-CccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEe
Q 017371          211 TTLVAD-GFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII  283 (372)
Q Consensus       211 ~~~~~~-~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~  283 (372)
                      ...... .......++++++++.++.+. .++.|..|++...+  ....+. ........++++++|.+.++..
T Consensus       194 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~--~~~~~~-~~~~~v~~~~~~~~~~~l~~~~  263 (372)
T 1k8k_C          194 LMFESSSSCGWVHGVCFSANGSRVAWVS-HDSTVCLADADKKM--AVATLA-SETLPLLAVTFITESSLVAAGH  263 (372)
T ss_dssp             EEEECCCCSSCEEEEEECSSSSEEEEEE-TTTEEEEEEGGGTT--EEEEEE-CSSCCEEEEEEEETTEEEEEET
T ss_pred             heEecCCCCCeEEEEEECCCCCEEEEEe-CCCEEEEEECCCCc--eeEEEc-cCCCCeEEEEEecCCCEEEEEe
Confidence            333332 223356789999998666655 56689889886432  122222 2222356788888887666653

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.40  E-value=4.7e-05  Score=76.25  Aligned_cols=177  Identities=10%  Similarity=-0.020  Sum_probs=100.9

Q ss_pred             CCC-c-EEEEe-cCCeEEEEe-C----CceEEEEec-----CCCcccCeEEcCCCC-EEEEeCC----------CcEEEE
Q 017371           88 KNG-V-IYTAT-RDGWIKRLQ-D----GTWVNWKFI-----DSQTLVGLTSTKEGH-LIICDNA----------NGLHKV  143 (372)
Q Consensus        88 ~~G-~-l~v~~-~~g~i~~~~-~----g~~~~~~~~-----~~~p~~gl~~d~dG~-l~v~~~~----------~gv~~~  143 (372)
                      ||| . |+++. .+.+|+.++ +    ++.+.+...     ..... +++++|||+ |+++...          ..|+.+
T Consensus        88 PDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~-~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~  166 (662)
T 3azo_A           88 PAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWA-DPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAV  166 (662)
T ss_dssp             SSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEE-EEEEETTTTEEEEEEEEECSSSTTCEEEEEEEE
T ss_pred             cCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCcccc-CcEECCCCCEEEEEEecccCCCCCCceeEEEEE
Confidence            777 4 56665 467899998 7    555554331     23445 889999997 4444322          247788


Q ss_pred             c-CC------C-cEEEeeecCCcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCC-CC---e
Q 017371          144 S-ED------G-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS-SN---I  210 (372)
Q Consensus       144 ~-~~------g-~~~l~~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~-t~---~  210 (372)
                      + .+      + .+.+..  .+  ......+++.+||+ |+++....  .        ...-....|+.+|.+ ++   +
T Consensus       167 ~~~~~~~~~~~~~~~l~~--~~--~~~~~~~~~SpDG~~la~~~~~~--~--------~~~~~~~~i~~~d~~~~g~~~~  232 (662)
T 3azo_A          167 PLDGSAAADRSAVRELSD--DA--HRFVTGPRLSPDGRQAVWLAWDH--P--------RMPWEGTELKTARVTEDGRFAD  232 (662)
T ss_dssp             ETTSTTTTCGGGSEESSC--SC--SSEECCCEECTTSSEEEEEEECT--T--------CCTTTCEEEEEEEECTTSCEEE
T ss_pred             ECCCCccccCCceeEEEe--cC--CCcccCceECCCCCEEEEEECCC--C--------CCCCCCcEEEEEEECCCCcccc
Confidence            8 55      6 444320  11  12456788999996 54442210  0        000012479999987 56   5


Q ss_pred             EEEEeCC-ccCcceEEEecCCCEEEEEeCCCC--eEEEEEccCCCCcceeeeccCCCC------C--CceeEEcCCCCEE
Q 017371          211 TTLVADG-FYFANGVALSRDEDYVVVCESWKF--RCRKYWLKGERKGKLETFAENLPG------A--PDNINLAPDGTFW  279 (372)
Q Consensus       211 ~~~~~~~-~~~~~gi~~~~dg~~l~v~~~~~~--~i~~~~~~g~~~~~~~~~~~~~~g------~--p~~i~~d~~G~lw  279 (372)
                      .+.+..+ ......++|+|||+ +|++...++  +|+++++++.+   ...+......      .  ...+++.++|.++
T Consensus       233 ~~~l~~~~~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~~~---~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~  308 (662)
T 3azo_A          233 TRTLLGGPEEAIAQAEWAPDGS-LIVATDRTGWWNLHRVDPATGA---ATQLCRREEEFAGPLWTPGMRWFAPLANGLIA  308 (662)
T ss_dssp             EEEEEEETTBCEEEEEECTTSC-EEEEECTTSSCEEEEECTTTCC---EEESSCCSSBSSCCCCSTTCCSEEECTTSCEE
T ss_pred             cEEeCCCCCceEcceEECCCCe-EEEEECCCCCeEEEEEECCCCc---eeecccccccccCccccccCceEeEeCCCEEE
Confidence            5555443 24456788999999 665554444  78888875432   1122111000      0  2356777788877


Q ss_pred             EEEe
Q 017371          280 IAII  283 (372)
Q Consensus       280 va~~  283 (372)
                      +...
T Consensus       309 ~~~~  312 (662)
T 3azo_A          309 VVHG  312 (662)
T ss_dssp             EEEB
T ss_pred             EEEE
Confidence            6654

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=98.40  E-value=0.00029  Score=63.32  Aligned_cols=229  Identities=11%  Similarity=0.014  Sum_probs=132.1

Q ss_pred             CccEEEcCCCc-EEEEecCCeEEEEe--CCc-eEEEEecCCCcccCeEEcCCCCEEEEeCC-CcEEEEc-CCCcEEEeee
Q 017371           81 PEDASMDKNGV-IYTATRDGWIKRLQ--DGT-WVNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDGVENFLSY  154 (372)
Q Consensus        81 p~~i~~d~~G~-l~v~~~~g~i~~~~--~g~-~~~~~~~~~~p~~gl~~d~dG~l~v~~~~-~gv~~~~-~~g~~~l~~~  154 (372)
                      ..++++.++|. |..+..++.|..|+  +++ ...+....+... .+++.|++.++++... ..+..++ .++..... .
T Consensus        58 v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~-~  135 (304)
T 2ynn_A           58 VRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIR-SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQ-T  135 (304)
T ss_dssp             EEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE-EEEECSSSSEEEEEETTSCEEEEEGGGTTEEEE-E
T ss_pred             EEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEE-EEEEcCCCCEEEEECCCCeEEEEECCCCcchhh-h
Confidence            45677777775 55666899999999  454 333433334456 8999999987666444 4477777 54411111 1


Q ss_pred             cCCcccccccceEEcc-CCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEE-EeCCc-cCcceEEEec--C
Q 017371          155 VNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VADGF-YFANGVALSR--D  229 (372)
Q Consensus       155 ~~~~~~~~~~~l~~d~-dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~-~~~~~-~~~~gi~~~~--d  229 (372)
                      ..+. ...+..+++.+ ++.++++-                 ..++.|..+|..+++... +..+. ...+.+.+.+  +
T Consensus       136 ~~~h-~~~v~~v~~~p~~~~~l~sg-----------------s~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  197 (304)
T 2ynn_A          136 FEGH-EHFVMCVAFNPKDPSTFASG-----------------CLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPD  197 (304)
T ss_dssp             ECCC-CSCEEEEEECTTCTTEEEEE-----------------ETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTT
T ss_pred             hccc-CCcEEEEEECCCCCCEEEEE-----------------eCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCC
Confidence            1111 13467889988 56766652                 256778888875443222 22221 2234456665  6


Q ss_pred             CCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCcc
Q 017371          230 EDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKL  309 (372)
Q Consensus       230 g~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~  309 (372)
                      +++ +++.+.++.|..+++...+  ....+. ........+++.+++.+.++...                         
T Consensus       198 ~~~-l~s~s~D~~i~iWd~~~~~--~~~~~~-~h~~~v~~~~~~p~~~~l~s~s~-------------------------  248 (304)
T 2ynn_A          198 KPY-MITASDDLTIKIWDYQTKS--CVATLE-GHMSNVSFAVFHPTLPIIISGSE-------------------------  248 (304)
T ss_dssp             CCE-EEEEETTSEEEEEETTTTE--EEEEEE-CCSSCEEEEEECSSSSEEEEEET-------------------------
T ss_pred             CCE-EEEEcCCCeEEEEeCCCCc--cceeeC-CCCCCEEEEEECCCCCEEEEEcC-------------------------
Confidence            664 4455556778888875431  112222 22233456788999987776655                         


Q ss_pred             ccccccCCCceEEEEECC-CCcEEEEEECCCCCeeccceeeEEE--CCEEEEEeCCCCeEEEEeC
Q 017371          310 FSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQV--DNHLYVISLTSNFIGKVQL  371 (372)
Q Consensus       310 ~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~--~g~L~igs~~~~~i~~~~~  371 (372)
                               .+.|...|. +++.+..+....+    .+.++...  ++..|+++-..+.+.++++
T Consensus       249 ---------Dg~i~iWd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~asg~~~g~~~~~~  300 (304)
T 2ynn_A          249 ---------DGTLKIWNSSTYKVEKTLNVGLE----RSWCIATHPTGRKNYIASGFDNGFTVLSL  300 (304)
T ss_dssp             ---------TSCEEEEETTTCCEEEEECCSSS----SEEEEEECTTCGGGCEEEEETTEEEEEEC
T ss_pred             ---------CCeEEEEECCCCceeeeccCCCc----cEEEEEECCCCCceEEEEecCCceEEEEe
Confidence                     456666664 4777777654332    35556544  3345555555666766654

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=98.40  E-value=0.00014  Score=66.61  Aligned_cols=185  Identities=14%  Similarity=0.104  Sum_probs=106.7

Q ss_pred             CCCccEEEcCCCc-EEEEecCCeEEEEe--CCceEEE---EecCCCcccCeEEcCC--CCEEEEeCC-CcEEEEc-CCC-
Q 017371           79 NHPEDASMDKNGV-IYTATRDGWIKRLQ--DGTWVNW---KFIDSQTLVGLTSTKE--GHLIICDNA-NGLHKVS-EDG-  147 (372)
Q Consensus        79 ~~p~~i~~d~~G~-l~v~~~~g~i~~~~--~g~~~~~---~~~~~~p~~gl~~d~d--G~l~v~~~~-~gv~~~~-~~g-  147 (372)
                      ....++++.++|. |.++..+|.|..|+  .+..+..   ....+... .+++.++  ++++++... ..|..++ .++ 
T Consensus        12 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~   90 (379)
T 3jrp_A           12 ELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVW-RVDWAHPKFGTILASCSYDGKVLIWKEENGR   90 (379)
T ss_dssp             CCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEE-EEEECCGGGCSEEEEEETTSCEEEEEEETTE
T ss_pred             ccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEE-EEEeCCCCCCCEEEEeccCCEEEEEEcCCCc
Confidence            3566789999885 55555899999988  3333322   22223345 8888766  776655444 4477777 555 


Q ss_pred             cEEEeeecCCcccccccceEEccC--CcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCe---EEEEeCCccCcc
Q 017371          148 VENFLSYVNGSKLRFANDVVEASD--GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI---TTLVADGFYFAN  222 (372)
Q Consensus       148 ~~~l~~~~~~~~~~~~~~l~~d~d--G~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~---~~~~~~~~~~~~  222 (372)
                      ...+... .+. ...+..+++.++  |++.++-.                 .++.|..+|..+++   ...+........
T Consensus        91 ~~~~~~~-~~~-~~~v~~~~~~~~~~~~~l~~~~-----------------~d~~i~v~d~~~~~~~~~~~~~~~~~~v~  151 (379)
T 3jrp_A           91 WSQIAVH-AVH-SASVNSVQWAPHEYGPLLLVAS-----------------SDGKVSVVEFKENGTTSPIIIDAHAIGVN  151 (379)
T ss_dssp             EEEEEEE-CCC-SSCEEEEEECCGGGCSEEEEEE-----------------TTSEEEEEECCTTSCCCEEEEECCTTCEE
T ss_pred             eeEeeee-cCC-CcceEEEEeCCCCCCCEEEEec-----------------CCCcEEEEecCCCCceeeEEecCCCCceE
Confidence            3333221 111 135678899888  77666522                 46788888876552   222222233346


Q ss_pred             eEEEec-------------CCCEEEEEeCCCCeEEEEEccCCCCcc-eeeeccCCCCCCceeEEcCC---CCEEEEEec
Q 017371          223 GVALSR-------------DEDYVVVCESWKFRCRKYWLKGERKGK-LETFAENLPGAPDNINLAPD---GTFWIAIIK  284 (372)
Q Consensus       223 gi~~~~-------------dg~~l~v~~~~~~~i~~~~~~g~~~~~-~~~~~~~~~g~p~~i~~d~~---G~lwva~~~  284 (372)
                      .++++|             +++.++.+. .++.|..|++....... .........+....+++.++   |++.++...
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~  229 (379)
T 3jrp_A          152 SASWAPATIEEDGEHNGTKESRKFVTGG-ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ  229 (379)
T ss_dssp             EEEECCCC----------CTTCEEEEEE-TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEET
T ss_pred             EEEEcCccccccccccCCCCCCEEEEEe-CCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeC
Confidence            788888             677555554 46678888876432211 11111122334567889998   666665544

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=98.39  E-value=6e-06  Score=76.43  Aligned_cols=184  Identities=7%  Similarity=-0.049  Sum_probs=100.9

Q ss_pred             CCccEEEcCCCcEEE-EecCCeEEEEe--CCceEE---EEecCCCcccCeEEcCCCCEEEEeC-CCcEEEEc-CCCc--E
Q 017371           80 HPEDASMDKNGVIYT-ATRDGWIKRLQ--DGTWVN---WKFIDSQTLVGLTSTKEGHLIICDN-ANGLHKVS-EDGV--E  149 (372)
Q Consensus        80 ~p~~i~~d~~G~l~v-~~~~g~i~~~~--~g~~~~---~~~~~~~p~~gl~~d~dG~l~v~~~-~~gv~~~~-~~g~--~  149 (372)
                      ...++++.++|.+.+ +..+|.|..|+  ++.++.   +....+... .+++.++|+++++.. +..+..++ .++.  .
T Consensus        13 ~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~-~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~   91 (377)
T 3dwl_C           13 PSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVT-CVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWK   91 (377)
T ss_dssp             CCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEE-EEEECTTTCCEEEEETTSSEEEC------CCC
T ss_pred             cEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEE-EEEEeCCCCEEEEEeCCCeEEEEEcCCCCcee
Confidence            456889999887554 44788888888  453222   222223345 899999997555543 34466666 3332  1


Q ss_pred             EEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCe----EEEEeC-CccCcceE
Q 017371          150 NFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI----TTLVAD-GFYFANGV  224 (372)
Q Consensus       150 ~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~----~~~~~~-~~~~~~gi  224 (372)
                      ..... .+ ....+..+++.++|+..++-.                 .++.|..+|..+++    ...+.. .-.....+
T Consensus        92 ~~~~~-~~-~~~~v~~~~~~~~~~~l~~~~-----------------~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~  152 (377)
T 3dwl_C           92 QTLVL-LR-LNRAATFVRWSPNEDKFAVGS-----------------GARVISVCYFEQENDWWVSKHLKRPLRSTILSL  152 (377)
T ss_dssp             CEEEC-CC-CSSCEEEEECCTTSSCCEEEE-----------------SSSCEEECCC-----CCCCEEECSSCCSCEEEE
T ss_pred             eeeEe-cc-cCCceEEEEECCCCCEEEEEe-----------------cCCeEEEEEECCcccceeeeEeecccCCCeEEE
Confidence            11111 11 113566888999987655422                 45678888876654    233332 23345678


Q ss_pred             EEecCCCEEEEEeCCCCeEEEEEccCCCCcc------------eeeecc--CCCCCCceeEEcCCCCEEEEEec
Q 017371          225 ALSRDEDYVVVCESWKFRCRKYWLKGERKGK------------LETFAE--NLPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       225 ~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~------------~~~~~~--~~~g~p~~i~~d~~G~lwva~~~  284 (372)
                      +++|+++.++.+. .++.|..+++.......            ......  ...+....++++++|++.++...
T Consensus       153 ~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~  225 (377)
T 3dwl_C          153 DWHPNNVLLAAGC-ADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGH  225 (377)
T ss_dssp             EECTTSSEEEEEE-SSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEET
T ss_pred             EEcCCCCEEEEEe-CCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeC
Confidence            9999998666554 45668888874221100            011111  12233567889999986665544

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=98.39  E-value=0.0005  Score=63.30  Aligned_cols=183  Identities=10%  Similarity=0.070  Sum_probs=110.9

Q ss_pred             CCCCCCCccEEEcCCCc-EEEEecCCeEEEEe--CCce-EEEEecCCCcccCeEEcCCCCEEEEeCCCc-EEEEc-CC--
Q 017371           75 EGSVNHPEDASMDKNGV-IYTATRDGWIKRLQ--DGTW-VNWKFIDSQTLVGLTSTKEGHLIICDNANG-LHKVS-ED--  146 (372)
Q Consensus        75 ~g~~~~p~~i~~d~~G~-l~v~~~~g~i~~~~--~g~~-~~~~~~~~~p~~gl~~d~dG~l~v~~~~~g-v~~~~-~~--  146 (372)
                      .|.-....++++.++|. |..++.||.|..|+  .++. ..+........ .+++.|+|.++++....+ +..++ ..  
T Consensus        61 ~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~-~~~~sp~g~~lasg~~d~~i~v~~~~~~~  139 (354)
T 2pbi_B           61 KGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVM-ACAYAPSGCAIACGGLDNKCSVYPLTFDK  139 (354)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCC-EEEECTTSSEEEEESTTSEEEEEECCCCT
T ss_pred             cCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEE-EEEECCCCCEEEEeeCCCCEEEEEEeccc
Confidence            34445567899999885 55566899999999  4443 33333444556 899999999877765544 44443 21  


Q ss_pred             --C----cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCcc-
Q 017371          147 --G----VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFY-  219 (372)
Q Consensus       147 --g----~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~-  219 (372)
                        +    ...+..     ....+..+++.+++...++-                 ..++.|..+|..+++......+.. 
T Consensus       140 ~~~~~~~~~~~~~-----h~~~v~~~~~~~~~~~l~t~-----------------s~D~~v~lwd~~~~~~~~~~~~h~~  197 (354)
T 2pbi_B          140 NENMAAKKKSVAM-----HTNYLSACSFTNSDMQILTA-----------------SGDGTCALWDVESGQLLQSFHGHGA  197 (354)
T ss_dssp             TCCSGGGCEEEEE-----CSSCEEEEEECSSSSEEEEE-----------------ETTSEEEEEETTTCCEEEEEECCSS
T ss_pred             cccccccceeeec-----cCCcEEEEEEeCCCCEEEEE-----------------eCCCcEEEEeCCCCeEEEEEcCCCC
Confidence              1    111110     01245678888888766552                 256789999988777654443322 


Q ss_pred             CcceEEEec--CCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 017371          220 FANGVALSR--DEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       220 ~~~gi~~~~--dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~  284 (372)
                      ....+++++  +++.++ +...+..|..+++...+  ....+. ........+++.++|++.++...
T Consensus       198 ~v~~~~~~~~~~g~~l~-sgs~Dg~v~~wd~~~~~--~~~~~~-~h~~~v~~v~~~p~~~~l~s~s~  260 (354)
T 2pbi_B          198 DVLCLDLAPSETGNTFV-SGGCDKKAMVWDMRSGQ--CVQAFE-THESDVNSVRYYPSGDAFASGSD  260 (354)
T ss_dssp             CEEEEEECCCSSCCEEE-EEETTSCEEEEETTTCC--EEEEEC-CCSSCEEEEEECTTSSEEEEEET
T ss_pred             CeEEEEEEeCCCCCEEE-EEeCCCeEEEEECCCCc--EEEEec-CCCCCeEEEEEeCCCCEEEEEeC
Confidence            234566766  456444 44456778888876432  122222 22334567889999987776654

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=98.39  E-value=0.00068  Score=61.32  Aligned_cols=178  Identities=12%  Similarity=0.130  Sum_probs=107.1

Q ss_pred             CCCccEEEcCCCc-EEEEecCCeEEEEe--CCce-EEEEecCCCcccCeEEcCCCCEEEEeCC-CcEEEEcCCC--cEEE
Q 017371           79 NHPEDASMDKNGV-IYTATRDGWIKRLQ--DGTW-VNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVSEDG--VENF  151 (372)
Q Consensus        79 ~~p~~i~~d~~G~-l~v~~~~g~i~~~~--~g~~-~~~~~~~~~p~~gl~~d~dG~l~v~~~~-~gv~~~~~~g--~~~l  151 (372)
                      ....++++.++|. |..+..+|.|..|+  +++. ..+....+... .+++.+++.++++... ..+..++..+  ...+
T Consensus        66 ~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~  144 (319)
T 3frx_A           66 HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVM-SVDIDKKASMIISGSRDKTIKVWTIKGQCLATL  144 (319)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE-EEEECTTSCEEEEEETTSCEEEEETTSCEEEEE
T ss_pred             ccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEE-EEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEE
Confidence            3456788888885 45566899999999  5553 33333334455 8999999987766544 4466777333  3333


Q ss_pred             eeecCCcccccccceEEcc------CCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCc-cCcceE
Q 017371          152 LSYVNGSKLRFANDVVEAS------DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF-YFANGV  224 (372)
Q Consensus       152 ~~~~~~~~~~~~~~l~~d~------dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~-~~~~gi  224 (372)
                      ...     ...+..+.+.+      ++...++                 +..++.|..+|..+++......+. ...+.+
T Consensus       145 ~~h-----~~~v~~~~~~~~~~~~~~~~~l~s-----------------~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~  202 (319)
T 3frx_A          145 LGH-----NDWVSQVRVVPNEKADDDSVTIIS-----------------AGNDKMVKAWNLNQFQIEADFIGHNSNINTL  202 (319)
T ss_dssp             CCC-----SSCEEEEEECCC------CCEEEE-----------------EETTSCEEEEETTTTEEEEEECCCCSCEEEE
T ss_pred             ecc-----CCcEEEEEEccCCCCCCCccEEEE-----------------EeCCCEEEEEECCcchhheeecCCCCcEEEE
Confidence            211     11234455554      3334443                 225677888888777665544332 334678


Q ss_pred             EEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 017371          225 ALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       225 ~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~  284 (372)
                      +++|+++.+..+ ..++.|..+++...+.  ...+.  .......+++.++|.+.++...
T Consensus       203 ~~sp~g~~l~s~-~~dg~i~iwd~~~~~~--~~~~~--~~~~v~~~~~sp~~~~la~~~~  257 (319)
T 3frx_A          203 TASPDGTLIASA-GKDGEIMLWNLAAKKA--MYTLS--AQDEVFSLAFSPNRYWLAAATA  257 (319)
T ss_dssp             EECTTSSEEEEE-ETTCEEEEEETTTTEE--EEEEE--CCSCEEEEEECSSSSEEEEEET
T ss_pred             EEcCCCCEEEEE-eCCCeEEEEECCCCcE--EEEec--CCCcEEEEEEcCCCCEEEEEcC
Confidence            999999855544 4566788888764321  11221  1223567889999987666544

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=98.39  E-value=0.0003  Score=62.59  Aligned_cols=226  Identities=9%  Similarity=0.042  Sum_probs=127.5

Q ss_pred             CCCCCCccEEEcCCC-cEEEEecCCeEEEEe--CCceEE-EEecCCCcccCeEEcCCCCEEEEeCCCc-EEEEc-CCC--
Q 017371           76 GSVNHPEDASMDKNG-VIYTATRDGWIKRLQ--DGTWVN-WKFIDSQTLVGLTSTKEGHLIICDNANG-LHKVS-EDG--  147 (372)
Q Consensus        76 g~~~~p~~i~~d~~G-~l~v~~~~g~i~~~~--~g~~~~-~~~~~~~p~~gl~~d~dG~l~v~~~~~g-v~~~~-~~g--  147 (372)
                      +.-....++++ ++| .|++++.+|.|..|+  +++... +....+... .+++.++|+++++....| +..++ .+.  
T Consensus        16 ~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~   93 (313)
T 3odt_A           16 GHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLN-SVCYDSEKELLLFGGKDTMINGVPLFATSG   93 (313)
T ss_dssp             CCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEE-EEEEETTTTEEEEEETTSCEEEEETTCCTT
T ss_pred             CCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEE-EEEECCCCCEEEEecCCCeEEEEEeeecCC
Confidence            33345667888 555 667777899999999  444333 333334455 899999998666654444 55555 222  


Q ss_pred             cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEE-EeCCccCcceEEE
Q 017371          148 VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VADGFYFANGVAL  226 (372)
Q Consensus       148 ~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~-~~~~~~~~~gi~~  226 (372)
                      .+.+... .+. ...+..+.+  +++..++-                 ..++.|..+|.  ++... +.........+++
T Consensus        94 ~~~~~~~-~~~-~~~i~~~~~--~~~~l~~~-----------------~~d~~i~~~d~--~~~~~~~~~~~~~v~~~~~  150 (313)
T 3odt_A           94 EDPLYTL-IGH-QGNVCSLSF--QDGVVISG-----------------SWDKTAKVWKE--GSLVYNLQAHNASVWDAKV  150 (313)
T ss_dssp             SCC-CEE-CCC-SSCEEEEEE--ETTEEEEE-----------------ETTSEEEEEET--TEEEEEEECCSSCEEEEEE
T ss_pred             CCcccch-hhc-ccCEEEEEe--cCCEEEEE-----------------eCCCCEEEEcC--CcEEEecccCCCceeEEEE
Confidence            1111111 111 123456666  34444432                 24678888883  44333 3333333456777


Q ss_pred             ec-CCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHh
Q 017371          227 SR-DEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAA  305 (372)
Q Consensus       227 ~~-dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~  305 (372)
                      .+ +++.++.+. .++.|..++..    .....+..........+++.++|.+.++...                     
T Consensus       151 ~~~~~~~l~~~~-~d~~i~i~d~~----~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d---------------------  204 (313)
T 3odt_A          151 VSFSENKFLTAS-ADKTIKLWQND----KVIKTFSGIHNDVVRHLAVVDDGHFISCSND---------------------  204 (313)
T ss_dssp             EETTTTEEEEEE-TTSCEEEEETT----EEEEEECSSCSSCEEEEEEEETTEEEEEETT---------------------
T ss_pred             ccCCCCEEEEEE-CCCCEEEEecC----ceEEEEeccCcccEEEEEEcCCCeEEEccCC---------------------
Confidence            77 787666554 45668777732    1222332223344667888888885554443                     


Q ss_pred             cCccccccccCCCceEEEEECC-CCcEEEEEECCCCCeeccceeeEEE-CCEEEEEeCCCCeEEEEeC
Q 017371          306 YPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL  371 (372)
Q Consensus       306 ~p~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~-~g~L~igs~~~~~i~~~~~  371 (372)
                                    +.|..+|. +++.+..+....+    .++++... +++|+.++ ....|..+++
T Consensus       205 --------------g~i~i~d~~~~~~~~~~~~~~~----~i~~~~~~~~~~l~~~~-~dg~v~iwd~  253 (313)
T 3odt_A          205 --------------GLIKLVDMHTGDVLRTYEGHES----FVYCIKLLPNGDIVSCG-EDRTVRIWSK  253 (313)
T ss_dssp             --------------SEEEEEETTTCCEEEEEECCSS----CEEEEEECTTSCEEEEE-TTSEEEEECT
T ss_pred             --------------CeEEEEECCchhhhhhhhcCCc----eEEEEEEecCCCEEEEe-cCCEEEEEEC
Confidence                          56777774 4777777765433    36666665 45666555 3456666654

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=98.38  E-value=0.00056  Score=62.96  Aligned_cols=225  Identities=12%  Similarity=0.055  Sum_probs=132.0

Q ss_pred             CCccEEEcCCCcEEE-EecCCeEEEEe-C-C-------ceEEEEecCCCcccCeEEcCCCCEEEE-eCCCcEEEEc-CCC
Q 017371           80 HPEDASMDKNGVIYT-ATRDGWIKRLQ-D-G-------TWVNWKFIDSQTLVGLTSTKEGHLIIC-DNANGLHKVS-EDG  147 (372)
Q Consensus        80 ~p~~i~~d~~G~l~v-~~~~g~i~~~~-~-g-------~~~~~~~~~~~p~~gl~~d~dG~l~v~-~~~~gv~~~~-~~g  147 (372)
                      ...++++.++|...+ +..++.+..++ . +       ....+....+... .+++.+++..+++ ..+..+..+| .++
T Consensus       108 ~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~t~s~D~~v~lwd~~~~  186 (354)
T 2pbi_B          108 WVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLS-ACSFTNSDMQILTASGDGTCALWDVESG  186 (354)
T ss_dssp             CCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEE-EEEECSSSSEEEEEETTSEEEEEETTTC
T ss_pred             CEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEE-EEEEeCCCCEEEEEeCCCcEEEEeCCCC
Confidence            456788888886554 44788888876 2 1       1222322233345 8889998865555 4444577777 666


Q ss_pred             --cEEEeeecCCcccccccceEEcc--CCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCc-cCcc
Q 017371          148 --VENFLSYVNGSKLRFANDVVEAS--DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF-YFAN  222 (372)
Q Consensus       148 --~~~l~~~~~~~~~~~~~~l~~d~--dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~-~~~~  222 (372)
                        ...+... .    ..+..+++.+  +|+..++-                 ..++.|..+|..+++........ ...+
T Consensus       187 ~~~~~~~~h-~----~~v~~~~~~~~~~g~~l~sg-----------------s~Dg~v~~wd~~~~~~~~~~~~h~~~v~  244 (354)
T 2pbi_B          187 QLLQSFHGH-G----ADVLCLDLAPSETGNTFVSG-----------------GCDKKAMVWDMRSGQCVQAFETHESDVN  244 (354)
T ss_dssp             CEEEEEECC-S----SCEEEEEECCCSSCCEEEEE-----------------ETTSCEEEEETTTCCEEEEECCCSSCEE
T ss_pred             eEEEEEcCC-C----CCeEEEEEEeCCCCCEEEEE-----------------eCCCeEEEEECCCCcEEEEecCCCCCeE
Confidence              3333211 1    1234555554  56666652                 25678999998877765544432 3356


Q ss_pred             eEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccC-CCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHH
Q 017371          223 GVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAEN-LPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKH  301 (372)
Q Consensus       223 gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~-~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~  301 (372)
                      .++++|+++.++.+ +.+..|..+++...+  ....+... .......+.+.++|++.++...                 
T Consensus       245 ~v~~~p~~~~l~s~-s~D~~v~lwd~~~~~--~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~-----------------  304 (354)
T 2pbi_B          245 SVRYYPSGDAFASG-SDDATCRLYDLRADR--EVAIYSKESIIFGASSVDFSLSGRLLFAGYN-----------------  304 (354)
T ss_dssp             EEEECTTSSEEEEE-ETTSCEEEEETTTTE--EEEEECCTTCCSCEEEEEECTTSSEEEEEET-----------------
T ss_pred             EEEEeCCCCEEEEE-eCCCeEEEEECCCCc--EEEEEcCCCcccceeEEEEeCCCCEEEEEEC-----------------
Confidence            78999999855544 456678888875431  12222211 1112356888999988777665                 


Q ss_pred             HHHhcCccccccccCCCceEEEEEC-CCCcEEEEEECCCCCeeccceeeEEE-CCE-EEEEeCCCCeEEEE
Q 017371          302 VLAAYPKLFSQFITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQV-DNH-LYVISLTSNFIGKV  369 (372)
Q Consensus       302 ~~~~~p~~~~~~~~~~~~~~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~-L~igs~~~~~i~~~  369 (372)
                                       .+.|..+| .+|+.+..+....+    .++++... +++ |..|+ ....|.++
T Consensus       305 -----------------d~~i~vwd~~~~~~~~~l~~h~~----~v~~l~~spdg~~l~sgs-~D~~v~vW  353 (354)
T 2pbi_B          305 -----------------DYTINVWDVLKGSRVSILFGHEN----RVSTLRVSPDGTAFCSGS-WDHTLRVW  353 (354)
T ss_dssp             -----------------TSCEEEEETTTCSEEEEECCCSS----CEEEEEECTTSSCEEEEE-TTSEEEEE
T ss_pred             -----------------CCcEEEEECCCCceEEEEECCCC----cEEEEEECCCCCEEEEEc-CCCCEEec
Confidence                             35666677 36777776654332    47777775 444 44444 34455443

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=98.35  E-value=6.9e-05  Score=70.10  Aligned_cols=182  Identities=15%  Similarity=0.077  Sum_probs=113.5

Q ss_pred             CCCccEEEcCCC-c-EEEEecCCeEEEEe--CCceEEEE--e-cCCCcccCeEEcCCCCEEEEe-CCCcEEEEc-CCC--
Q 017371           79 NHPEDASMDKNG-V-IYTATRDGWIKRLQ--DGTWVNWK--F-IDSQTLVGLTSTKEGHLIICD-NANGLHKVS-EDG--  147 (372)
Q Consensus        79 ~~p~~i~~d~~G-~-l~v~~~~g~i~~~~--~g~~~~~~--~-~~~~p~~gl~~d~dG~l~v~~-~~~gv~~~~-~~g--  147 (372)
                      ....++++.++| . |+.++.+|.|..|+  +++.....  . ..+... .+++.++|+++++. .+..+..+| .++  
T Consensus       132 ~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  210 (402)
T 2aq5_A          132 KRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIY-SVDWSRDGALICTSCRDKRVRVIEPRKGTV  210 (402)
T ss_dssp             SCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEE-EEEECTTSSCEEEEETTSEEEEEETTTTEE
T ss_pred             CeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceE-EEEECCCCCEEEEEecCCcEEEEeCCCCce
Confidence            356678899887 3 55666899999999  55433322  2 223345 89999999755554 444577788 566  


Q ss_pred             cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeE---EEEeCCccCcceE
Q 017371          148 VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT---TLVADGFYFANGV  224 (372)
Q Consensus       148 ~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~---~~~~~~~~~~~gi  224 (372)
                      ...+.....+   ..+..+++.++|+++++-.+              ...++.|..+|..+++.   ............+
T Consensus       211 ~~~~~~~~~~---~~~~~~~~~~~~~~l~~g~~--------------~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~  273 (402)
T 2aq5_A          211 VAEKDRPHEG---TRPVHAVFVSEGKILTTGFS--------------RMSERQVALWDTKHLEEPLSLQELDTSSGVLLP  273 (402)
T ss_dssp             EEEEECSSCS---SSCCEEEECSTTEEEEEEEC--------------TTCCEEEEEEETTBCSSCSEEEECCCCSSCEEE
T ss_pred             eeeeccCCCC---CcceEEEEcCCCcEEEEecc--------------CCCCceEEEEcCccccCCceEEeccCCCceeEE
Confidence            3322111111   23567889999987775310              02467889999876442   1122233445678


Q ss_pred             EEecCCCEEEEEeCCCCeEEEEEccCCC--CcceeeeccCCCCCCceeEEcCCCCEEE
Q 017371          225 ALSRDEDYVVVCESWKFRCRKYWLKGER--KGKLETFAENLPGAPDNINLAPDGTFWI  280 (372)
Q Consensus       225 ~~~~dg~~l~v~~~~~~~i~~~~~~g~~--~~~~~~~~~~~~g~p~~i~~d~~G~lwv  280 (372)
                      ++++|++.++++...++.|..|++...+  ......+.  ..+...++++.++|.+.+
T Consensus       274 ~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~--~~~~v~~~~~sp~~~~~~  329 (402)
T 2aq5_A          274 FFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS--SKESQRGMGYMPKRGLEV  329 (402)
T ss_dssp             EEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC--CSSCCSEEEECCGGGSCG
T ss_pred             EEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccc--cCCcccceEEecccccce
Confidence            9999999998888777889999887643  11222221  223467888888876544

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=98.35  E-value=0.00032  Score=66.74  Aligned_cols=151  Identities=10%  Similarity=0.038  Sum_probs=92.7

Q ss_pred             CCccEEEcCCCcE--EEEecCCeEEEEe-C---Cc-eEEEE--ecCCCcccCeEEcCCCCEEEE-eCCCcEEEEc-CCC-
Q 017371           80 HPEDASMDKNGVI--YTATRDGWIKRLQ-D---GT-WVNWK--FIDSQTLVGLTSTKEGHLIIC-DNANGLHKVS-EDG-  147 (372)
Q Consensus        80 ~p~~i~~d~~G~l--~v~~~~g~i~~~~-~---g~-~~~~~--~~~~~p~~gl~~d~dG~l~v~-~~~~gv~~~~-~~g-  147 (372)
                      ...++++.++|..  +++..+|.|..|+ .   ++ ...+.  .....+. ++++.++|+.+++ +....++.++ .++ 
T Consensus       104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~-~~~~sp~~~~l~~~~~~g~v~~~~~~~~~  182 (450)
T 2vdu_B          104 YIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPN-AISIAEDDTTVIIADKFGDVYSIDINSIP  182 (450)
T ss_dssp             CEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEE-EEEECTTSSEEEEEETTSEEEEEETTSCC
T ss_pred             ceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCce-EEEEcCCCCEEEEEeCCCcEEEEecCCcc
Confidence            4678999999965  3444789898888 4   33 33332  2234566 9999999975544 4434477777 444 


Q ss_pred             cEE-EeeecCCcccccccceEEccC---CcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEE-eCC-ccCc
Q 017371          148 VEN-FLSYVNGSKLRFANDVVEASD---GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-ADG-FYFA  221 (372)
Q Consensus       148 ~~~-l~~~~~~~~~~~~~~l~~d~d---G~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~-~~~-~~~~  221 (372)
                      ... ......+ ....+..+++.++   |++.++-+                 .++.|..+|..+++.... ..+ ....
T Consensus       183 ~~~~~~~~~~~-h~~~v~~~~~sp~~~~~~~l~s~~-----------------~d~~i~vwd~~~~~~~~~~~~~h~~~v  244 (450)
T 2vdu_B          183 EEKFTQEPILG-HVSMLTDVHLIKDSDGHQFIITSD-----------------RDEHIKISHYPQCFIVDKWLFGHKHFV  244 (450)
T ss_dssp             CSSCCCCCSEE-CSSCEEEEEEEECTTSCEEEEEEE-----------------TTSCEEEEEESCTTCEEEECCCCSSCE
T ss_pred             cccccceeeec-ccCceEEEEEcCCCCCCcEEEEEc-----------------CCCcEEEEECCCCceeeeeecCCCCce
Confidence            211 0001111 1134668899998   87666532                 456788888766654332 322 2345


Q ss_pred             ceEEEecCCCEEEEEeCCCCeEEEEEccCC
Q 017371          222 NGVALSRDEDYVVVCESWKFRCRKYWLKGE  251 (372)
Q Consensus       222 ~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~  251 (372)
                      ..++|+ |++.++.+. .++.|..+++...
T Consensus       245 ~~~~~s-d~~~l~s~~-~d~~v~vwd~~~~  272 (450)
T 2vdu_B          245 SSICCG-KDYLLLSAG-GDDKIFAWDWKTG  272 (450)
T ss_dssp             EEEEEC-STTEEEEEE-SSSEEEEEETTTC
T ss_pred             EEEEEC-CCCEEEEEe-CCCeEEEEECCCC
Confidence            678999 998666554 5678888888654

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=98.35  E-value=0.00017  Score=65.67  Aligned_cols=232  Identities=10%  Similarity=-0.012  Sum_probs=130.9

Q ss_pred             CCccEEEcCC----C-cEEEEecCCeEEEEe--CCceE-EEEecCCCcccCeEEcC-CCCEEEEeCC-CcEEEEc-CCC-
Q 017371           80 HPEDASMDKN----G-VIYTATRDGWIKRLQ--DGTWV-NWKFIDSQTLVGLTSTK-EGHLIICDNA-NGLHKVS-EDG-  147 (372)
Q Consensus        80 ~p~~i~~d~~----G-~l~v~~~~g~i~~~~--~g~~~-~~~~~~~~p~~gl~~d~-dG~l~v~~~~-~gv~~~~-~~g-  147 (372)
                      ...++++.++    | .|+++..+|.|..|+  +++.. .+....+... .+++.+ +++++++... ..|..++ .++ 
T Consensus        71 ~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  149 (366)
T 3k26_A           71 NFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAIN-ELKFHPRDPNLLLSVSKDHALRLWNIQTDT  149 (366)
T ss_dssp             CEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEE-EEEECSSCTTEEEEEETTSCEEEEETTTTE
T ss_pred             cEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEE-EEEECCCCCCEEEEEeCCCeEEEEEeecCe
Confidence            3566778776    4 366677899999999  45433 3332334455 999998 8886666444 4577788 566 


Q ss_pred             -cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEe-----------
Q 017371          148 -VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-----------  215 (372)
Q Consensus       148 -~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~-----------  215 (372)
                       ...+.. ..+ ....+..+++.++|+..++-.                 .++.|..+|..+++.....           
T Consensus       150 ~~~~~~~-~~~-~~~~v~~~~~~~~~~~l~~~~-----------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  210 (366)
T 3k26_A          150 LVAIFGG-VEG-HRDEVLSADYDLLGEKIMSCG-----------------MDHSLKLWRINSKRMMNAIKESYDYNPNKT  210 (366)
T ss_dssp             EEEEECS-TTS-CSSCEEEEEECTTSSEEEEEE-----------------TTSCEEEEESCSHHHHHHHHHHHTCCGGGC
T ss_pred             EEEEecc-ccc-ccCceeEEEECCCCCEEEEec-----------------CCCCEEEEECCCCccccccceeEEecCCCC
Confidence             332211 011 123567899999998766532                 4567888887654321100           


Q ss_pred             ------------------CCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCc------------ceeeeccCCCC
Q 017371          216 ------------------DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKG------------KLETFAENLPG  265 (372)
Q Consensus       216 ------------------~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~------------~~~~~~~~~~g  265 (372)
                                        ........++++  ++ ++++...++.|..+++......            ....+. ...+
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  286 (366)
T 3k26_A          211 NRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GD-LILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFD-YSQC  286 (366)
T ss_dssp             SSCCCCEEECCCSEEECSSCSSCCCEEEEE--TT-EEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEE-CSSC
T ss_pred             cccccceeeccCccccccCCcceEEEEEEc--CC-EEEEEecCCEEEEEeCCCccccccccccCCcchheecccc-ccCC
Confidence                              011223467777  55 5555556778888887643210            011111 1222


Q ss_pred             CCceeEEcCC--CCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEECCC-Cc----EEEEEECC
Q 017371          266 APDNINLAPD--GTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED-GT----IIRNLVDP  338 (372)
Q Consensus       266 ~p~~i~~d~~--G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~-g~----~~~~~~~~  338 (372)
                      ....+++.++  |++.++...                                  .+.|..++.+ ++    ....+...
T Consensus       287 ~v~~~~~s~~~~~~~l~~~~~----------------------------------dg~i~vwd~~~~~~~~~~~~~~~~~  332 (366)
T 3k26_A          287 DIWYMRFSMDFWQKMLALGNQ----------------------------------VGKLYVWDLEVEDPHKAKCTTLTHH  332 (366)
T ss_dssp             CSSCCCCEECTTSSEEEEECT----------------------------------TSCEEEEECCSSSGGGCEEEEECCT
T ss_pred             cEEEEEEcCCCCCcEEEEEec----------------------------------CCcEEEEECCCCCCccccceEEccc
Confidence            3456677777  877776654                                  3556666643 32    33344433


Q ss_pred             CCCeeccceeeEEE-CCEEEEEeCCCCeEEEEeC
Q 017371          339 TGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL  371 (372)
Q Consensus       339 ~g~~~~~~t~~~~~-~g~L~igs~~~~~i~~~~~  371 (372)
                      .  ....++++... ++++.+.......|.++++
T Consensus       333 ~--~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~  364 (366)
T 3k26_A          333 K--CGAAIRQTSFSRDSSILIAVCDDASIWRWDR  364 (366)
T ss_dssp             T--CCSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred             c--cCCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence            1  12357777776 4544444445567888775

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=98.35  E-value=0.00037  Score=74.95  Aligned_cols=183  Identities=15%  Similarity=0.103  Sum_probs=111.6

Q ss_pred             CCCCccEEEcCCCcE-EEEecCCeEEEEe--CCc-eEEEEecCCCcccCeEEcCCCCEEEEeCC-CcEEEEc-CCC--cE
Q 017371           78 VNHPEDASMDKNGVI-YTATRDGWIKRLQ--DGT-WVNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG--VE  149 (372)
Q Consensus        78 ~~~p~~i~~d~~G~l-~v~~~~g~i~~~~--~g~-~~~~~~~~~~p~~gl~~d~dG~l~v~~~~-~gv~~~~-~~g--~~  149 (372)
                      .....++++.++|.+ .++..+|.|..|+  +++ ...+....+... .+++.++|++.++... ..+..++ .+|  ..
T Consensus       615 ~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~-~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~  693 (1249)
T 3sfz_A          615 TDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVL-CCAFSSDDSYIATCSADKKVKIWDSATGKLVH  693 (1249)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE-EEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             cccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEE-EEEEecCCCEEEEEeCCCeEEEEECCCCceEE
Confidence            345667899999854 4556899999999  454 333333334455 8999999987666444 4477788 666  33


Q ss_pred             EEeeecCCcccccccceEEccC--CcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCc-cCcceEEE
Q 017371          150 NFLSYVNGSKLRFANDVVEASD--GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF-YFANGVAL  226 (372)
Q Consensus       150 ~l~~~~~~~~~~~~~~l~~d~d--G~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~-~~~~gi~~  226 (372)
                      .+...     ...+..+++.++  +.+.++-                 ..++.|..+|..+++......+. .....+++
T Consensus       694 ~~~~~-----~~~v~~~~~~~~~~~~~l~sg-----------------~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~  751 (1249)
T 3sfz_A          694 TYDEH-----SEQVNCCHFTNKSNHLLLATG-----------------SNDFFLKLWDLNQKECRNTMFGHTNSVNHCRF  751 (1249)
T ss_dssp             EEECC-----SSCEEEEEECSSSSCCEEEEE-----------------ETTSCEEEEETTSSSEEEEECCCSSCEEEEEE
T ss_pred             EEcCC-----CCcEEEEEEecCCCceEEEEE-----------------eCCCeEEEEECCCcchhheecCCCCCEEEEEE
Confidence            33211     124567788774  3454442                 25678889998877755544332 33467899


Q ss_pred             ecCCCEEEEEeCCCCeEEEEEccCCCCcceeeec----------cCCCCCCceeEEcCCCCEEEEEec
Q 017371          227 SRDEDYVVVCESWKFRCRKYWLKGERKGKLETFA----------ENLPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       227 ~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~----------~~~~g~p~~i~~d~~G~lwva~~~  284 (372)
                      +|+++.++.+ +.++.|..+++............          .........+++.++|...++...
T Consensus       752 sp~~~~l~s~-s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~  818 (1249)
T 3sfz_A          752 SPDDELLASC-SADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAK  818 (1249)
T ss_dssp             CSSTTEEEEE-ESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEET
T ss_pred             ecCCCEEEEE-ECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcC
Confidence            9999965554 45667888887643211110000          001113456788999987777654

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=98.35  E-value=0.00012  Score=67.67  Aligned_cols=240  Identities=12%  Similarity=-0.001  Sum_probs=136.2

Q ss_pred             CCccEEEcC-CC-cEEEEecCCeEEEEe-CC-ceEEEEecC---CCcccCeEEcCCCCEEEEeCC-CcEEEEcCCC--cE
Q 017371           80 HPEDASMDK-NG-VIYTATRDGWIKRLQ-DG-TWVNWKFID---SQTLVGLTSTKEGHLIICDNA-NGLHKVSEDG--VE  149 (372)
Q Consensus        80 ~p~~i~~d~-~G-~l~v~~~~g~i~~~~-~g-~~~~~~~~~---~~p~~gl~~d~dG~l~v~~~~-~gv~~~~~~g--~~  149 (372)
                      ...++++.+ ++ .|++++.+|.|..++ .+ ....+....   .... .+++.++|+++++... ..+..++.++  ..
T Consensus       120 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  198 (383)
T 3ei3_B          120 AITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYC-CVDVSVSRQMLATGDSTGRLLLLGLDGHEIF  198 (383)
T ss_dssp             BEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEE-EEEEETTTTEEEEEETTSEEEEEETTSCEEE
T ss_pred             ceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeE-EEEECCCCCEEEEECCCCCEEEEECCCCEEE
Confidence            456788887 54 566666899999999 43 444443322   2345 8999999986665444 4466677434  33


Q ss_pred             EEeeecCCcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCC----CeEEEEeCCccCcceE
Q 017371          150 NFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS----NITTLVADGFYFANGV  224 (372)
Q Consensus       150 ~l~~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t----~~~~~~~~~~~~~~gi  224 (372)
                      .+...     ...+..+++.++|. ++++-.                 .++.|..+|..+    ++.............+
T Consensus       199 ~~~~h-----~~~v~~~~~~~~~~~~l~s~~-----------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~  256 (383)
T 3ei3_B          199 KEKLH-----KAKVTHAEFNPRCDWLMATSS-----------------VDATVKLWDLRNIKDKNSYIAEMPHEKPVNAA  256 (383)
T ss_dssp             EEECS-----SSCEEEEEECSSCTTEEEEEE-----------------TTSEEEEEEGGGCCSTTCEEEEEECSSCEEEE
T ss_pred             EeccC-----CCcEEEEEECCCCCCEEEEEe-----------------CCCEEEEEeCCCCCcccceEEEecCCCceEEE
Confidence            33211     13567899999997 666532                 467788888765    4443333333445678


Q ss_pred             EEec-CCCEEEEEeCCCCeEEEEEccCCCCcce-eeeccCCC--CCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHH
Q 017371          225 ALSR-DEDYVVVCESWKFRCRKYWLKGERKGKL-ETFAENLP--GAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIK  300 (372)
Q Consensus       225 ~~~~-dg~~l~v~~~~~~~i~~~~~~g~~~~~~-~~~~~~~~--g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r  300 (372)
                      +++| +++.++.+. .++.|..|++...+.... ........  ..+-.....+++.+......+....           
T Consensus       257 ~~s~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-----------  324 (383)
T 3ei3_B          257 YFNPTDSTKLLTTD-QRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL-----------  324 (383)
T ss_dssp             EECTTTSCEEEEEE-SSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-----------
T ss_pred             EEcCCCCCEEEEEc-CCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc-----------
Confidence            9999 998666554 567899998865432211 11000000  0122234455555444333210000           


Q ss_pred             HHHHhcCccccccccCCCceEEEEEC-CCCcEEEEEECCCCCeeccceeeEEE-CC-EEEEEeCCCCeEEEEeCC
Q 017371          301 HVLAAYPKLFSQFITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQV-DN-HLYVISLTSNFIGKVQLS  372 (372)
Q Consensus       301 ~~~~~~p~~~~~~~~~~~~~~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~-~g-~L~igs~~~~~i~~~~~~  372 (372)
                                    .....+.|..+| .+++.+..+.....  ...++.+... ++ .|..++  ...|.+++++
T Consensus       325 --------------s~s~d~~i~iwd~~~~~~~~~l~~~~~--~~~~~~~~~s~~g~~l~s~s--d~~i~iw~~~  381 (383)
T 3ei3_B          325 --------------LLNDKRTIDIYDANSGGLVHQLRDPNA--AGIISLNKFSPTGDVLASGM--GFNILIWNRE  381 (383)
T ss_dssp             --------------CTTCCCCEEEEETTTCCEEEEECBTTB--CSCCCEEEECTTSSEEEEEE--TTEEEEEECC
T ss_pred             --------------ccCCCCeEEEEecCCCceeeeecCCCC--CceEEEEEEecCccEEEEec--CCcEEEEecC
Confidence                          122356777777 46888887765321  1234554554 44 454553  5788888764

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=98.33  E-value=0.0013  Score=60.04  Aligned_cols=171  Identities=15%  Similarity=0.017  Sum_probs=97.0

Q ss_pred             CCCcEEEEecCCeEEEEe--CCc-eEEEEecC-CCcccCeEEcC--CCCEEEEeCC-CcEEEEc-CCC-cEEEeeecCCc
Q 017371           88 KNGVIYTATRDGWIKRLQ--DGT-WVNWKFID-SQTLVGLTSTK--EGHLIICDNA-NGLHKVS-EDG-VENFLSYVNGS  158 (372)
Q Consensus        88 ~~G~l~v~~~~g~i~~~~--~g~-~~~~~~~~-~~p~~gl~~d~--dG~l~v~~~~-~gv~~~~-~~g-~~~l~~~~~~~  158 (372)
                      .||.+.+-+.++.+..++  .++ ...+.... +... .+++.+  +|+++++... ..+..++ .++ .......   .
T Consensus        93 ~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~---~  168 (343)
T 3lrv_A           93 PCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEII-YMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSA---K  168 (343)
T ss_dssp             STTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEE-EEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECC---C
T ss_pred             CCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEE-EEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEec---C
Confidence            344444444444444444  333 22332222 2345 899999  9987775444 4577788 556 3222111   1


Q ss_pred             ccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEE-EEeCC--ccCcceEEEecCCCEEEE
Q 017371          159 KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT-LVADG--FYFANGVALSRDEDYVVV  235 (372)
Q Consensus       159 ~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~-~~~~~--~~~~~gi~~~~dg~~l~v  235 (372)
                      ....+..+++.++|.+.++-                 ..++.|..+|..+++.. .....  ......++|+|++.+|..
T Consensus       169 ~~~~i~~~~~~pdg~~lasg-----------------~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s  231 (343)
T 3lrv_A          169 SDVEYSSGVLHKDSLLLALY-----------------SPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVV  231 (343)
T ss_dssp             SSCCCCEEEECTTSCEEEEE-----------------CTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEE
T ss_pred             CCCceEEEEECCCCCEEEEE-----------------cCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEE
Confidence            11246789999999987752                 25678999998877643 22222  334467899999997777


Q ss_pred             EeCCCCeEEEEEccCCCCc-ceeeeccCCCCCCc---eeEEcCCCCEEEEEe
Q 017371          236 CESWKFRCRKYWLKGERKG-KLETFAENLPGAPD---NINLAPDGTFWIAII  283 (372)
Q Consensus       236 ~~~~~~~i~~~~~~g~~~~-~~~~~~~~~~g~p~---~i~~d~~G~lwva~~  283 (372)
                      +. . +.|..+++...+.. ....+..  ...+-   .++++++|.+.++..
T Consensus       232 ~~-~-~~v~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~l~~~s  279 (343)
T 3lrv_A          232 EC-D-QTVVCFDLRKDVGTLAYPTYTI--PEFKTGTVTYDIDDSGKNMIAYS  279 (343)
T ss_dssp             EE-S-SBEEEEETTSSTTCBSSCCCBC-------CCEEEEECTTSSEEEEEE
T ss_pred             Ee-C-CeEEEEEcCCCCcceeeccccc--ccccccceEEEECCCCCEEEEec
Confidence            66 3 37888888654221 1111110  11122   489999998777644

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=98.33  E-value=0.00062  Score=64.68  Aligned_cols=174  Identities=12%  Similarity=0.045  Sum_probs=98.0

Q ss_pred             ccEEEcCCCcEEEEecCCeEEEEe--CCceEE-EEecCCCcccCeEEcCCCCEEEEeCCCcEEEEc-CCC--cEEEeeec
Q 017371           82 EDASMDKNGVIYTATRDGWIKRLQ--DGTWVN-WKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG--VENFLSYV  155 (372)
Q Consensus        82 ~~i~~d~~G~l~v~~~~g~i~~~~--~g~~~~-~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~-~~g--~~~l~~~~  155 (372)
                      .++.++ ++.|..++.+|.|..|+  +++... +....+... .+++.+++.|..+..+..+..++ .++  ...+. ..
T Consensus       126 ~~~~~~-~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~-~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-~h  202 (464)
T 3v7d_B          126 TCLQFE-DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVW-ALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFE-GH  202 (464)
T ss_dssp             EEEEEE-TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE-EEEECSTTEEEEEETTSCEEEEETTTTEEEEEEC-CC
T ss_pred             EEEEEC-CCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEE-EEEEcCCCEEEEEeCCCCEEEEECCCCcEEEEEC-CC
Confidence            345565 34777788999999999  555333 322233445 88998888666666555688888 666  33321 11


Q ss_pred             CCcccccccceEEc--cCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEE--------------------
Q 017371          156 NGSKLRFANDVVEA--SDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL--------------------  213 (372)
Q Consensus       156 ~~~~~~~~~~l~~d--~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~--------------------  213 (372)
                      .    ..+..+++.  ++++..++-+                 .++.|..+|..+++...                    
T Consensus       203 ~----~~v~~l~~~~~~~~~~l~s~s-----------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (464)
T 3v7d_B          203 N----STVRCLDIVEYKNIKYIVTGS-----------------RDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPY  261 (464)
T ss_dssp             S----SCEEEEEEEESSSCEEEEEEE-----------------TTSCEEEEECCCCCCC------CCSSEEESCGGGCTT
T ss_pred             C----CccEEEEEecCCCCCEEEEEc-----------------CCCcEEEeeCCCCcccccccccCCcceEeeccCCCeE
Confidence            1    234455655  4555555422                 45566666665443111                    


Q ss_pred             ---EeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 017371          214 ---VADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       214 ---~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~  284 (372)
                         ...+ ....-.+++++++.++.+. .++.|..+++...+  ....+. ...+....++++++|++.++...
T Consensus       262 ~~~~~~~-~~~~v~~~~~~~~~l~~~~-~d~~i~vwd~~~~~--~~~~~~-~~~~~v~~~~~~~~~~~l~sg~~  330 (464)
T 3v7d_B          262 FVGVLRG-HMASVRTVSGHGNIVVSGS-YDNTLIVWDVAQMK--CLYILS-GHTDRIYSTIYDHERKRCISASM  330 (464)
T ss_dssp             EEEEECC-CSSCEEEEEEETTEEEEEE-TTSCEEEEETTTTE--EEEEEC-CCSSCEEEEEEETTTTEEEEEET
T ss_pred             EEEEccC-ccceEEEEcCCCCEEEEEe-CCCeEEEEECCCCc--EEEEec-CCCCCEEEEEEcCCCCEEEEEeC
Confidence               1111 1112345678888666655 46678888875431  122222 22334567888999987666654

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=98.32  E-value=0.00051  Score=61.06  Aligned_cols=221  Identities=14%  Similarity=0.066  Sum_probs=130.1

Q ss_pred             CCCccEEEcCCCc-EEEEecCCeEEEEe--CC---c-eEEEEecCCCcccCeEEcCCCCEEEEeCCCcEEEEcCCC--cE
Q 017371           79 NHPEDASMDKNGV-IYTATRDGWIKRLQ--DG---T-WVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDG--VE  149 (372)
Q Consensus        79 ~~p~~i~~d~~G~-l~v~~~~g~i~~~~--~g---~-~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~~~g--~~  149 (372)
                      ....++++.++|. |+++..+|.|..++  +.   + ...+........ .+.++ .+.++.+.....+..++ .+  ..
T Consensus        60 ~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~-~~~l~~~~~d~~i~~~d-~~~~~~  136 (313)
T 3odt_A           60 GFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVC-SLSFQ-DGVVISGSWDKTAKVWK-EGSLVY  136 (313)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEE-EEEEE-TTEEEEEETTSEEEEEE-TTEEEE
T ss_pred             ccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEE-EEEec-CCEEEEEeCCCCEEEEc-CCcEEE
Confidence            3566788998885 55666899888887  22   1 223322223344 77773 23344444444466666 33  33


Q ss_pred             EEeeecCCcccccccceEEcc-CCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeC--CccCcceEEE
Q 017371          150 NFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD--GFYFANGVAL  226 (372)
Q Consensus       150 ~l~~~~~~~~~~~~~~l~~d~-dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~--~~~~~~gi~~  226 (372)
                      .+... .    ..+..+.+.+ +++..++-.                 .++.|..+|.  ++......  .......+++
T Consensus       137 ~~~~~-~----~~v~~~~~~~~~~~~l~~~~-----------------~d~~i~i~d~--~~~~~~~~~~~~~~i~~~~~  192 (313)
T 3odt_A          137 NLQAH-N----ASVWDAKVVSFSENKFLTAS-----------------ADKTIKLWQN--DKVIKTFSGIHNDVVRHLAV  192 (313)
T ss_dssp             EEECC-S----SCEEEEEEEETTTTEEEEEE-----------------TTSCEEEEET--TEEEEEECSSCSSCEEEEEE
T ss_pred             ecccC-C----CceeEEEEccCCCCEEEEEE-----------------CCCCEEEEec--CceEEEEeccCcccEEEEEE
Confidence            22211 1    2345666666 666555422                 4677888884  33333332  2334467889


Q ss_pred             ecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhc
Q 017371          227 SRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAY  306 (372)
Q Consensus       227 ~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~  306 (372)
                      ++++. ++ +...++.|..+++...+  ....+. ...+....+++.++|.+..+...                      
T Consensus       193 ~~~~~-~~-~~~~dg~i~i~d~~~~~--~~~~~~-~~~~~i~~~~~~~~~~l~~~~~d----------------------  245 (313)
T 3odt_A          193 VDDGH-FI-SCSNDGLIKLVDMHTGD--VLRTYE-GHESFVYCIKLLPNGDIVSCGED----------------------  245 (313)
T ss_dssp             EETTE-EE-EEETTSEEEEEETTTCC--EEEEEE-CCSSCEEEEEECTTSCEEEEETT----------------------
T ss_pred             cCCCe-EE-EccCCCeEEEEECCchh--hhhhhh-cCCceEEEEEEecCCCEEEEecC----------------------
Confidence            99987 44 44456789889886432  122222 23344677899999976655543                      


Q ss_pred             CccccccccCCCceEEEEEC-CCCcEEEEEECCCCCeeccceeeEEE-CCEEEEEeCCCCeEEEEeC
Q 017371          307 PKLFSQFITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL  371 (372)
Q Consensus       307 p~~~~~~~~~~~~~~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~L~igs~~~~~i~~~~~  371 (372)
                                   +.|..+| .+++.+..+..+.+    .++++... ++++..++ ....|..+++
T Consensus       246 -------------g~v~iwd~~~~~~~~~~~~~~~----~i~~~~~~~~~~~~~~~-~dg~i~iw~~  294 (313)
T 3odt_A          246 -------------RTVRIWSKENGSLKQVITLPAI----SIWSVDCMSNGDIIVGS-SDNLVRIFSQ  294 (313)
T ss_dssp             -------------SEEEEECTTTCCEEEEEECSSS----CEEEEEECTTSCEEEEE-TTSCEEEEES
T ss_pred             -------------CEEEEEECCCCceeEEEeccCc----eEEEEEEccCCCEEEEe-CCCcEEEEeC
Confidence                         6788888 46888888776543    36677775 56665554 4567877775

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=98.32  E-value=2.1e-05  Score=73.97  Aligned_cols=175  Identities=13%  Similarity=0.108  Sum_probs=99.8

Q ss_pred             EcCCCcEEEEecCCeEEEEe-C---CceEEEE--ecCCCcccCeEEcC--CCCEEEEeCCC----cEEEEcCCC--cEEE
Q 017371           86 MDKNGVIYTATRDGWIKRLQ-D---GTWVNWK--FIDSQTLVGLTSTK--EGHLIICDNAN----GLHKVSEDG--VENF  151 (372)
Q Consensus        86 ~d~~G~l~v~~~~g~i~~~~-~---g~~~~~~--~~~~~p~~gl~~d~--dG~l~v~~~~~----gv~~~~~~g--~~~l  151 (372)
                      .|.+|.||+++..| ++++. +   ..++...  ....... .|++|+  +++||++....    +|++.+..|  .+.+
T Consensus        19 ~d~~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~-~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~   96 (394)
T 3b7f_A           19 ESGPVMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIH-HIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEA   96 (394)
T ss_dssp             CCSCCEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEE-EEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEEC
T ss_pred             CCCCCEEEEEecCc-eEEEECCCCCCCceECCccCCCCceE-EEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceEC
Confidence            56688999999766 77776 3   2455542  2223445 899998  78999997544    688876555  5544


Q ss_pred             eee--cCCc-------ccccccceEEcc---CCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCc-
Q 017371          152 LSY--VNGS-------KLRFANDVVEAS---DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF-  218 (372)
Q Consensus       152 ~~~--~~~~-------~~~~~~~l~~d~---dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~-  218 (372)
                      ...  .+..       ....+..|++++   .++||+..                  ..+.|++.+......+.+.... 
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~------------------~~ggl~~S~DgG~tW~~~~~~~~  158 (394)
T 3b7f_A           97 TRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGT------------------SPQGLFRSTDHGASWEPVAGFND  158 (394)
T ss_dssp             SBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEE------------------ETTEEEEESSTTSBCEECHHHHT
T ss_pred             CccccCCCcccccccccccceeEEEeCCCCCCCEEEEEe------------------cCCcEEEEcCCCCCeEECcCccC
Confidence            321  1111       112344688885   68999953                  2467998876545555542110 


Q ss_pred             ----------------c--CcceEEEec-CCCEEEEEeCCCCeEEEEEccCCCCcceeeeccC-----CC------C-CC
Q 017371          219 ----------------Y--FANGVALSR-DEDYVVVCESWKFRCRKYWLKGERKGKLETFAEN-----LP------G-AP  267 (372)
Q Consensus       219 ----------------~--~~~gi~~~~-dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~-----~~------g-~p  267 (372)
                                      .  .-..|++++ +.+.+|+... ...|++..-.|. .-  +.+...     ++      + ..
T Consensus       159 ~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~-~ggl~~s~DgG~-tW--~~~~~~~~~~~~p~~~~~~g~~~  234 (394)
T 3b7f_A          159 HPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMS-SGGVFESTDAGT-DW--KPLNRGCAANFLPDPNVEFGHDP  234 (394)
T ss_dssp             CTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEE-TBEEEEESSTTS-SC--EECCTTCCCTTSSSSSSSSCBCE
T ss_pred             CccccccccccccCCCCCCceeEEEECCCCCCEEEEEEC-CCCEEEECCCCC-Cc--eECCCCccccccCCCccccCcce
Confidence                            0  012567776 3455888753 235776643332 11  111111     11      0 13


Q ss_pred             ceeEEcCC--CCEEEEEec
Q 017371          268 DNINLAPD--GTFWIAIIK  284 (372)
Q Consensus       268 ~~i~~d~~--G~lwva~~~  284 (372)
                      ..|+++++  +.+|++...
T Consensus       235 ~~i~~~~~~~~~l~vg~~~  253 (394)
T 3b7f_A          235 HCVVQHPAAPDILYQQNHC  253 (394)
T ss_dssp             EEEEECSSSTTEEEEEETT
T ss_pred             eEEEECCCCCCEEEEEcCC
Confidence            45788876  789998754

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=98.32  E-value=0.00035  Score=75.15  Aligned_cols=179  Identities=14%  Similarity=0.100  Sum_probs=111.8

Q ss_pred             CCCccEEEcCCCc-EEEEecCCeEEEEe--CCce-EEEEecCCCcccCeEEcCC--CCEEEEeCC-CcEEEEc-CCC--c
Q 017371           79 NHPEDASMDKNGV-IYTATRDGWIKRLQ--DGTW-VNWKFIDSQTLVGLTSTKE--GHLIICDNA-NGLHKVS-EDG--V  148 (372)
Q Consensus        79 ~~p~~i~~d~~G~-l~v~~~~g~i~~~~--~g~~-~~~~~~~~~p~~gl~~d~d--G~l~v~~~~-~gv~~~~-~~g--~  148 (372)
                      ....++++.++|. |.+++.+|.|..|+  +++. ..+....+... .+++.++  +.++++... ..+..++ .++  .
T Consensus       658 ~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~  736 (1249)
T 3sfz_A          658 DEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVN-CCHFTNKSNHLLLATGSNDFFLKLWDLNQKECR  736 (1249)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE-EEEECSSSSCCEEEEEETTSCEEEEETTSSSEE
T ss_pred             CCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEE-EEEEecCCCceEEEEEeCCCeEEEEECCCcchh
Confidence            3456789999885 45556899999999  5553 33433334445 8889874  345554433 4477788 555  3


Q ss_pred             EEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCC-----------
Q 017371          149 ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-----------  217 (372)
Q Consensus       149 ~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~-----------  217 (372)
                      ..+.    +. ...+..+++.++|+..++-+                 .+|.|..+|..+++.......           
T Consensus       737 ~~~~----~h-~~~v~~~~~sp~~~~l~s~s-----------------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~  794 (1249)
T 3sfz_A          737 NTMF----GH-TNSVNHCRFSPDDELLASCS-----------------ADGTLRLWDVRSANERKSINVKRFFLSSEDPP  794 (1249)
T ss_dssp             EEEC----CC-SSCEEEEEECSSTTEEEEEE-----------------SSSEEEEEEGGGTEEEEEEECCCCC-------
T ss_pred             heec----CC-CCCEEEEEEecCCCEEEEEE-----------------CCCeEEEEeCCCCcccceecccccccccCCcc
Confidence            3321    11 13567889999998777632                 467788888766654332211           


Q ss_pred             ---ccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 017371          218 ---FYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       218 ---~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~  284 (372)
                         ......+++++||+.++++.  .+.+..+++....  ....+.....+....+++.++|++.++...
T Consensus       795 ~~~~~~v~~~~~s~dg~~l~~~~--~~~v~~~d~~~~~--~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~  860 (1249)
T 3sfz_A          795 EDVEVIVKCCSWSADGDKIIVAA--KNKVLLFDIHTSG--LLAEIHTGHHSTIQYCDFSPYDHLAVIALS  860 (1249)
T ss_dssp             -CCCCCBCCCCBCTTSSEEEEEE--TTEEEEEETTTCC--EEEEEECSSSSCCCEEEECSSTTEEEEECS
T ss_pred             ccccceEEEEEECCCCCEEEEEc--CCcEEEEEecCCC--ceeEEcCCCCCceEEEEEcCCCCEEEEEeC
Confidence               11345678999999887775  4578888876532  222222223344677899999988777655

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=98.31  E-value=0.00058  Score=67.85  Aligned_cols=182  Identities=13%  Similarity=0.098  Sum_probs=108.1

Q ss_pred             CCCCCCccEEEcCCCcE-EEEecCCeEEEEe--CCce--E-EEEecCCCcccCeEEcCCCCEEEEeCC-C---c-EEEEc
Q 017371           76 GSVNHPEDASMDKNGVI-YTATRDGWIKRLQ--DGTW--V-NWKFIDSQTLVGLTSTKEGHLIICDNA-N---G-LHKVS  144 (372)
Q Consensus        76 g~~~~p~~i~~d~~G~l-~v~~~~g~i~~~~--~g~~--~-~~~~~~~~p~~gl~~d~dG~l~v~~~~-~---g-v~~~~  144 (372)
                      |.-....++++.|+|.+ ..++.+|.|..|+  .++.  . .+....+... .+++++||+..++... .   + +..++
T Consensus        57 ~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~-~v~fs~dg~~l~~~~~~~~~~~~v~~wd  135 (611)
T 1nr0_A           57 EHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVK-DISWDSESKRIAAVGEGRERFGHVFLFD  135 (611)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEE-EEEECTTSCEEEEEECCSSCSEEEEETT
T ss_pred             CCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceE-EEEECCCCCEEEEEECCCCceeEEEEee
Confidence            33345667999999964 4556899999998  3332  2 2222233445 9999999986655332 1   2 33444


Q ss_pred             CCC--cEEEeeecCCcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCc-cC
Q 017371          145 EDG--VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF-YF  220 (372)
Q Consensus       145 ~~g--~~~l~~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~-~~  220 (372)
                       .|  ...+    .+. ...++.+++.+++. ..++-                 ..++.|..+|..+++......+. ..
T Consensus       136 -~~~~~~~l----~gh-~~~v~~v~f~p~~~~~l~s~-----------------s~D~~v~lwd~~~~~~~~~l~~H~~~  192 (611)
T 1nr0_A          136 -TGTSNGNL----TGQ-ARAMNSVDFKPSRPFRIISG-----------------SDDNTVAIFEGPPFKFKSTFGEHTKF  192 (611)
T ss_dssp             -TCCBCBCC----CCC-SSCEEEEEECSSSSCEEEEE-----------------ETTSCEEEEETTTBEEEEEECCCSSC
T ss_pred             -CCCCccee----cCC-CCCceEEEECCCCCeEEEEE-----------------eCCCeEEEEECCCCeEeeeeccccCc
Confidence             33  2211    121 13567899999986 34442                 24677888887766654444432 33


Q ss_pred             cceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeecc------CCCCCCceeEEcCCCCEEEEEec
Q 017371          221 ANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAE------NLPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       221 ~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~------~~~g~p~~i~~d~~G~lwva~~~  284 (372)
                      .+.++|+|||+. +++...++.|..++....+.  ...+..      ...+....+++.++|.+.++...
T Consensus       193 V~~v~fspdg~~-las~s~D~~i~lwd~~~g~~--~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~  259 (611)
T 1nr0_A          193 VHSVRYNPDGSL-FASTGGDGTIVLYNGVDGTK--TGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASA  259 (611)
T ss_dssp             EEEEEECTTSSE-EEEEETTSCEEEEETTTCCE--EEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEET
T ss_pred             eEEEEECCCCCE-EEEEECCCcEEEEECCCCcE--eeeeccccccccccCCCEEEEEECCCCCEEEEEeC
Confidence            467999999984 44555566788787653321  112211      12234567889999987776554

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=98.31  E-value=0.00022  Score=64.14  Aligned_cols=180  Identities=16%  Similarity=0.112  Sum_probs=97.6

Q ss_pred             CCCCCCCccEEEcCCCc-EEEEecCCeEEEEe--CCc----e-EEEEecCCCcccCeEEcC--CCCEEEEeCC-CcEEEE
Q 017371           75 EGSVNHPEDASMDKNGV-IYTATRDGWIKRLQ--DGT----W-VNWKFIDSQTLVGLTSTK--EGHLIICDNA-NGLHKV  143 (372)
Q Consensus        75 ~g~~~~p~~i~~d~~G~-l~v~~~~g~i~~~~--~g~----~-~~~~~~~~~p~~gl~~d~--dG~l~v~~~~-~gv~~~  143 (372)
                      .|.-....++++.++|. |.++..+|.|..|+  .+.    . ..+....+... .+++.+  +++++++... ..+..+
T Consensus         8 ~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~d~~~l~s~~~dg~v~vw   86 (351)
T 3f3f_A            8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIV-AIDWASPEYGRIIASASYDKTVKLW   86 (351)
T ss_dssp             CCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEE-EEEECCGGGCSEEEEEETTSCEEEE
T ss_pred             cccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEE-EEEEcCCCCCCEEEEEcCCCeEEEE
Confidence            34445677899999885 55666899999998  332    1 22222233445 899987  5776665444 346667


Q ss_pred             c-CCC-c-------EEEeeecCCcccccccceEEccC--CcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEE
Q 017371          144 S-EDG-V-------ENFLSYVNGSKLRFANDVVEASD--GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT  212 (372)
Q Consensus       144 ~-~~g-~-------~~l~~~~~~~~~~~~~~l~~d~d--G~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~  212 (372)
                      + ..+ .       +.+... .+. ...+..+++.++  +++.++-.                 .++.|..+|..+++..
T Consensus        87 d~~~~~~~~~~~~~~~~~~~-~~~-~~~v~~~~~~~~~~~~~l~~~~-----------------~dg~v~iwd~~~~~~~  147 (351)
T 3f3f_A           87 EEDPDQEECSGRRWNKLCTL-NDS-KGSLYSVKFAPAHLGLKLACLG-----------------NDGILRLYDALEPSDL  147 (351)
T ss_dssp             EECTTSCTTSSCSEEEEEEE-CCC-SSCEEEEEECCGGGCSEEEEEE-----------------TTCEEEEEECSSTTCT
T ss_pred             ecCCCcccccccCcceeeee-ccc-CCceeEEEEcCCCCCcEEEEec-----------------CCCcEEEecCCChHHh
Confidence            6 433 1       222221 111 134668889888  87666522                 4678888887654311


Q ss_pred             E-------Ee-------CCccCcceEEEecC---CCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCC
Q 017371          213 L-------VA-------DGFYFANGVALSRD---EDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPD  275 (372)
Q Consensus       213 ~-------~~-------~~~~~~~gi~~~~d---g~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~  275 (372)
                      .       ..       ........++++|+   ++.++++.. +..+..++....+......+. ...+....+++.++
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~-~h~~~i~~~~~~p~  225 (351)
T 3f3f_A          148 RSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSAL-EQAIIYQRGKDGKLHVAAKLP-GHKSLIRSISWAPS  225 (351)
T ss_dssp             TCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEET-TEEEEEEECTTSCEEEEEECC-CCCSCEEEEEECCC
T ss_pred             ccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecC-CCcEEEEccCCCceeeeeecC-CCCcceeEEEECCC
Confidence            0       00       11223456888887   775665554 444433333222111111221 22233556778888


Q ss_pred             C
Q 017371          276 G  276 (372)
Q Consensus       276 G  276 (372)
                      |
T Consensus       226 ~  226 (351)
T 3f3f_A          226 I  226 (351)
T ss_dssp             S
T ss_pred             C
Confidence            7

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=98.31  E-value=7.6e-06  Score=69.61  Aligned_cols=160  Identities=14%  Similarity=0.012  Sum_probs=97.3

Q ss_pred             ccccCceEecCCCCCCCccEEEcCCCcEEEEecCCeEEEEe--CCc-------eEEEEecCCCcccCeEEcCCCCEEEEe
Q 017371           65 TQLQDFIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQ--DGT-------WVNWKFIDSQTLVGLTSTKEGHLIICD  135 (372)
Q Consensus        65 ~~l~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~g~i~~~~--~g~-------~~~~~~~~~~p~~gl~~d~dG~l~v~~  135 (372)
                      ..+..+.++..+.+..-..++++|+|.||.. .+|.+++++  ++.       -+.+-..+-.-...+.+|++|.||++.
T Consensus        27 ~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav~  105 (236)
T 1tl2_A           27 NWLARATLIGKGGWSNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAVS  105 (236)
T ss_dssp             CHHHHSEEEESSSCTTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEEE
T ss_pred             chhhhccccCccccccceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEeC
Confidence            3456788888866788999999999999999 889999998  322       122211111112278999999999994


Q ss_pred             CCCcEEEEc-C-CC-cEEEee--ecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCC-
Q 017371          136 NANGLHKVS-E-DG-VENFLS--YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN-  209 (372)
Q Consensus       136 ~~~gv~~~~-~-~g-~~~l~~--~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~-  209 (372)
                       ...|++++ + ++ ...+..  .+....-.....|.++++|.||..+                   .+.+++-.+-++ 
T Consensus       106 -dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-------------------dg~lyr~~~P~~~  165 (236)
T 1tl2_A          106 -KDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-------------------GQQFYKALPPVSN  165 (236)
T ss_dssp             -TTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-------------------TTEEEEECCCSST
T ss_pred             -CCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-------------------CCcEEecCCCCCC
Confidence             34588999 3 33 222111  1111111234689999999999863                   345665433211 


Q ss_pred             ------eEEEEe-CCccCcceEEEecCCCEEEEEeCCCCeEEEEEc
Q 017371          210 ------ITTLVA-DGFYFANGVALSRDEDYVVVCESWKFRCRKYWL  248 (372)
Q Consensus       210 ------~~~~~~-~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~  248 (372)
                            ..+.+. .+...-.-+.+++++. ||.++  +.++++...
T Consensus       166 ~~~wl~~~~~~g~~g~~~yr~l~f~~~G~-l~~v~--~g~~Y~~~~  208 (236)
T 1tl2_A          166 QDNWLARATKIGQGGWDTFKFLFFSSVGT-LFGVQ--GGKFYEDYP  208 (236)
T ss_dssp             TCCHHHHCEEEESSSGGGEEEEEECTTSC-EEEEE--TTEEEEESC
T ss_pred             CcccccccceeccCCcceEEEEEECCCCc-EEEEe--CCeEEecCC
Confidence                  111222 2222222355788886 77666  567887644

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.31  E-value=0.00069  Score=66.90  Aligned_cols=62  Identities=10%  Similarity=0.086  Sum_probs=39.9

Q ss_pred             EEEcCCCcEEEEecCCeEEEEe--CCceEEEEecCCC-----cccCeEEcCCCCEEEEeC------CCcEEEEc-CCC
Q 017371           84 ASMDKNGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQ-----TLVGLTSTKEGHLIICDN------ANGLHKVS-EDG  147 (372)
Q Consensus        84 i~~d~~G~l~v~~~~g~i~~~~--~g~~~~~~~~~~~-----p~~gl~~d~dG~l~v~~~------~~gv~~~~-~~g  147 (372)
                      ++++ +|.+|+++.+|.|+.+|  +|+...-......     ......+. +|.+|++..      ...|+.+| .+|
T Consensus       111 ~~~~-~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g~v~vg~~~~~~~~~g~v~a~D~~tG  186 (571)
T 2ad6_A          111 LAYG-AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KDTVLMGCSGAELGVRGAVNAFDLKTG  186 (571)
T ss_dssp             CEEE-TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TTEEEEECBCGGGTCCCEEEEEETTTC
T ss_pred             cEEE-CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-CCEEEEEecCCccCCCCEEEEEECCCC
Confidence            4554 67999999999999999  6765432222221     11122233 688988865      24588999 678

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=98.28  E-value=0.00045  Score=62.84  Aligned_cols=155  Identities=8%  Similarity=0.068  Sum_probs=97.9

Q ss_pred             EecCCCCCCCccEEEcCC---C--cEEEEecCCeEEEEe--CCc-eEEEEe-----cCCCcccCeEEcCC----CCEEEE
Q 017371           72 KVGEGSVNHPEDASMDKN---G--VIYTATRDGWIKRLQ--DGT-WVNWKF-----IDSQTLVGLTSTKE----GHLIIC  134 (372)
Q Consensus        72 ~~~~g~~~~p~~i~~d~~---G--~l~v~~~~g~i~~~~--~g~-~~~~~~-----~~~~p~~gl~~d~d----G~l~v~  134 (372)
                      .+..+.-....++++.++   +  .++++..++.|..|+  .++ ...+..     ..+... .+++.++    |+++++
T Consensus        12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~l~~   90 (366)
T 3k26_A           12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFY-TCAWTYDSNTSHPLLAV   90 (366)
T ss_dssp             EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEE-EEEEEECTTTCCEEEEE
T ss_pred             EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEE-EEEeccCCCCCCCEEEE
Confidence            444454456678888863   3  477777788888888  343 333321     113345 8888887    555554


Q ss_pred             -eCCCcEEEEc-CCC--cEEEeeecCCcccccccceEEcc-CCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCC
Q 017371          135 -DNANGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN  209 (372)
Q Consensus       135 -~~~~gv~~~~-~~g--~~~l~~~~~~~~~~~~~~l~~d~-dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~  209 (372)
                       .....+..++ .++  ...+...     ...+..+++.+ ++++.++-.                 .++.|..+|..++
T Consensus        91 ~~~dg~i~v~d~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~~l~s~~-----------------~dg~i~iwd~~~~  148 (366)
T 3k26_A           91 AGSRGIIRIINPITMQCIKHYVGH-----GNAINELKFHPRDPNLLLSVS-----------------KDHALRLWNIQTD  148 (366)
T ss_dssp             EETTCEEEEECTTTCCEEEEEESC-----CSCEEEEEECSSCTTEEEEEE-----------------TTSCEEEEETTTT
T ss_pred             ecCCCEEEEEEchhceEeeeecCC-----CCcEEEEEECCCCCCEEEEEe-----------------CCCeEEEEEeecC
Confidence             4334477777 555  3333211     13567899998 888776532                 4678999998877


Q ss_pred             eEEEEeC----CccCcceEEEecCCCEEEEEeCCCCeEEEEEccC
Q 017371          210 ITTLVAD----GFYFANGVALSRDEDYVVVCESWKFRCRKYWLKG  250 (372)
Q Consensus       210 ~~~~~~~----~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g  250 (372)
                      +......    .-.....++++++++.++.+. .++.|..+++..
T Consensus       149 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~  192 (366)
T 3k26_A          149 TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCG-MDHSLKLWRINS  192 (366)
T ss_dssp             EEEEEECSTTSCSSCEEEEEECTTSSEEEEEE-TTSCEEEEESCS
T ss_pred             eEEEEecccccccCceeEEEECCCCCEEEEec-CCCCEEEEECCC
Confidence            7665542    223446788999999766665 456788888764

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=98.28  E-value=0.0015  Score=59.58  Aligned_cols=181  Identities=9%  Similarity=0.040  Sum_probs=103.1

Q ss_pred             CCCccEEEcCCCcE-EEEecCCeEEEEe--CCce-EEEEecCCCcccCeEEcCCCCEEEEeC-CCcEEEEcCCC-cEEEe
Q 017371           79 NHPEDASMDKNGVI-YTATRDGWIKRLQ--DGTW-VNWKFIDSQTLVGLTSTKEGHLIICDN-ANGLHKVSEDG-VENFL  152 (372)
Q Consensus        79 ~~p~~i~~d~~G~l-~v~~~~g~i~~~~--~g~~-~~~~~~~~~p~~gl~~d~dG~l~v~~~-~~gv~~~~~~g-~~~l~  152 (372)
                      ....++++.++|.+ ..+..+|.|..|+  +++. ..+....+... .+++.++|+.+++.. +..+..++-.+ .....
T Consensus        77 ~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~-~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~  155 (343)
T 2xzm_R           77 HFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVY-SVAFSPDNRQILSAGAEREIKLWNILGECKFSS  155 (343)
T ss_dssp             SCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEE-EEEECSSTTEEEEEETTSCEEEEESSSCEEEEC
T ss_pred             CceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEE-EEEECCCCCEEEEEcCCCEEEEEeccCCceeee
Confidence            34567889988865 4556899999999  5543 33433334455 899999998665543 34477777323 11111


Q ss_pred             eecCCcccccccceEEccCC----------cEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEE-EeCCccCc
Q 017371          153 SYVNGSKLRFANDVVEASDG----------SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VADGFYFA  221 (372)
Q Consensus       153 ~~~~~~~~~~~~~l~~d~dG----------~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~-~~~~~~~~  221 (372)
                      ....+ ....+..+++.+++          .++++                 +..++.|..+|.. ++... +...-...
T Consensus       156 ~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~l~s-----------------~~~d~~i~iwd~~-~~~~~~~~~h~~~v  216 (343)
T 2xzm_R          156 AEKEN-HSDWVSCVRYSPIMKSANKVQPFAPYFAS-----------------VGWDGRLKVWNTN-FQIRYTFKAHESNV  216 (343)
T ss_dssp             CTTTS-CSSCEEEEEECCCCCSCSCCCSSCCEEEE-----------------EETTSEEEEEETT-TEEEEEEECCSSCE
T ss_pred             ecccC-CCceeeeeeeccccccccccCCCCCEEEE-----------------EcCCCEEEEEcCC-CceeEEEcCccccc
Confidence            11011 11234566666665          33333                 2356788888854 44332 22223345


Q ss_pred             ceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEe
Q 017371          222 NGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII  283 (372)
Q Consensus       222 ~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~  283 (372)
                      +.++++|||++|..+ ..++.|..+++...... ...+.  .......+++.++|.+..+..
T Consensus       217 ~~~~~s~~g~~l~sg-s~dg~v~iwd~~~~~~~-~~~~~--~~~~v~~v~~sp~~~~la~~~  274 (343)
T 2xzm_R          217 NHLSISPNGKYIATG-GKDKKLLIWDILNLTYP-QREFD--AGSTINQIAFNPKLQWVAVGT  274 (343)
T ss_dssp             EEEEECTTSSEEEEE-ETTCEEEEEESSCCSSC-SEEEE--CSSCEEEEEECSSSCEEEEEE
T ss_pred             eEEEECCCCCEEEEE-cCCCeEEEEECCCCccc-ceeec--CCCcEEEEEECCCCCEEEEEC
Confidence            678999999965544 45667888887432111 11221  112356788999987655443

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=98.28  E-value=7.2e-05  Score=75.59  Aligned_cols=199  Identities=11%  Similarity=0.002  Sum_probs=104.5

Q ss_pred             CCccEEEcCCCc-EEEEec---------CCeEEEEe--CCceEEEEecCC---CcccCeEEcCCCCEEEEeCCCcEEEEc
Q 017371           80 HPEDASMDKNGV-IYTATR---------DGWIKRLQ--DGTWVNWKFIDS---QTLVGLTSTKEGHLIICDNANGLHKVS  144 (372)
Q Consensus        80 ~p~~i~~d~~G~-l~v~~~---------~g~i~~~~--~g~~~~~~~~~~---~p~~gl~~d~dG~l~v~~~~~gv~~~~  144 (372)
                      ...++++.+||+ |.++..         ++.|+.++  +++.+.+....+   ... .+++.|||+..+......|+.++
T Consensus        62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~-~~~~SPdG~~la~~~~~~i~~~~  140 (723)
T 1xfd_A           62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQ-YAGWGPKGQQLIFIFENNIYYCA  140 (723)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCS-BCCBCSSTTCEEEEETTEEEEES
T ss_pred             ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCcccccccc-ccEECCCCCEEEEEECCeEEEEE
Confidence            378899999996 555543         27788888  565544433222   245 78899999643333345688898


Q ss_pred             -CCC-cEEEeee-cCCc-------------ccccccceEEccCCc-EEEEeCC-CC---CCCc-------cccccc-c--
Q 017371          145 -EDG-VENFLSY-VNGS-------------KLRFANDVVEASDGS-LYFTVSS-SK---YLPH-------EYCLDI-L--  193 (372)
Q Consensus       145 -~~g-~~~l~~~-~~~~-------------~~~~~~~l~~d~dG~-i~vtd~~-~~---~~~~-------~~~~~~-~--  193 (372)
                       .+| ...+... ..+.             -+.....+++.|||+ |+++... ..   +...       .....+ .  
T Consensus       141 ~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (723)
T 1xfd_A          141 HVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPK  220 (723)
T ss_dssp             SSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCB
T ss_pred             CCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCC
Confidence             556 4444322 1110             001225789999996 4444211 00   0000       000000 0  


Q ss_pred             --cccCCCeEEEEeCCCCeE-EEEeCC------ccCcceEEEecCCCEEEEE-eCC--CCeEEEEEccCCCCcceeeecc
Q 017371          194 --EGKPHGQLLKYDPSSNIT-TLVADG------FYFANGVALSRDEDYVVVC-ESW--KFRCRKYWLKGERKGKLETFAE  261 (372)
Q Consensus       194 --~~~~~g~v~~~d~~t~~~-~~~~~~------~~~~~gi~~~~dg~~l~v~-~~~--~~~i~~~~~~g~~~~~~~~~~~  261 (372)
                        .......|+.+|.++++. ..+...      ......++|+|||+.++.. +..  ...|+.+++.+.+...  ....
T Consensus       221 ~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~--~~~~  298 (723)
T 1xfd_A          221 AGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTK--KHED  298 (723)
T ss_dssp             TTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEE--EEEE
T ss_pred             CCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceE--EEEe
Confidence              001123789999887764 333221      1122458899999866444 322  2457777876543221  1111


Q ss_pred             CCCCC----CceeEEcCCCC-EEEE
Q 017371          262 NLPGA----PDNINLAPDGT-FWIA  281 (372)
Q Consensus       262 ~~~g~----p~~i~~d~~G~-lwva  281 (372)
                      ...+.    +..+++.+||+ |+++
T Consensus       299 ~~~~~~~~~~~~~~~spdg~~l~~~  323 (723)
T 1xfd_A          299 ESEAWLHRQNEEPVFSKDGRKFFFI  323 (723)
T ss_dssp             ECSSCCCCCCCCCEECTTSCSEEEE
T ss_pred             ccCCEEeccCCCceEcCCCCeEEEE
Confidence            11122    24788999996 4443

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=98.25  E-value=0.00042  Score=69.85  Aligned_cols=183  Identities=14%  Similarity=0.140  Sum_probs=110.3

Q ss_pred             CCCCCCccEEEcCCC-c-EEEEecCCeEEEEe-C-C-c----e-EEEEecCCCcccCeEEcCCCCEEEEeCC-CcEEEEc
Q 017371           76 GSVNHPEDASMDKNG-V-IYTATRDGWIKRLQ-D-G-T----W-VNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS  144 (372)
Q Consensus        76 g~~~~p~~i~~d~~G-~-l~v~~~~g~i~~~~-~-g-~----~-~~~~~~~~~p~~gl~~d~dG~l~v~~~~-~gv~~~~  144 (372)
                      +.-....+|++.+++ . |..++.||.|..|+ . + .    . ..+........ .+++.++|++.++... ..|..++
T Consensus       380 ~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~-~v~~s~~g~~l~sgs~Dg~v~vwd  458 (694)
T 3dm0_A          380 AHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVE-DVVLSSDGQFALSGSWDGELRLWD  458 (694)
T ss_dssp             CCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEE-EEEECTTSSEEEEEETTSEEEEEE
T ss_pred             cCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEE-EEEECCCCCEEEEEeCCCcEEEEE
Confidence            333456678887654 4 55666899999998 2 1 1    1 12222223345 8999999987766544 4467777


Q ss_pred             -CCC--cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCc---
Q 017371          145 -EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF---  218 (372)
Q Consensus       145 -~~g--~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~---  218 (372)
                       .++  ...+...     ...+..+++.++|+..++-+                 .++.|..+|..+.....+....   
T Consensus       459 ~~~~~~~~~~~~h-----~~~v~~~~~s~~~~~l~s~s-----------------~D~~i~iwd~~~~~~~~~~~~~~~h  516 (694)
T 3dm0_A          459 LAAGVSTRRFVGH-----TKDVLSVAFSLDNRQIVSAS-----------------RDRTIKLWNTLGECKYTISEGGEGH  516 (694)
T ss_dssp             TTTTEEEEEEECC-----SSCEEEEEECTTSSCEEEEE-----------------TTSCEEEECTTSCEEEEECSSTTSC
T ss_pred             CCCCcceeEEeCC-----CCCEEEEEEeCCCCEEEEEe-----------------CCCEEEEEECCCCcceeeccCCCCC
Confidence             666  3333211     12466889999998766532                 4677888887544333332221   


Q ss_pred             -cCcceEEEecCCC-EEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 017371          219 -YFANGVALSRDED-YVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       219 -~~~~gi~~~~dg~-~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~  284 (372)
                       .....+++++++. .++++.+.++.|..+++...+.  ...+ ....+....++++++|++.++...
T Consensus       517 ~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~--~~~~-~~h~~~v~~v~~spdg~~l~sg~~  581 (694)
T 3dm0_A          517 RDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKL--RSTL-AGHTGYVSTVAVSPDGSLCASGGK  581 (694)
T ss_dssp             SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCE--EEEE-CCCSSCEEEEEECTTSSEEEEEET
T ss_pred             CCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcE--EEEE-cCCCCCEEEEEEeCCCCEEEEEeC
Confidence             1235688998863 3555656677788888765321  1222 223344677899999998777655

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=98.23  E-value=0.0001  Score=66.78  Aligned_cols=223  Identities=13%  Similarity=0.042  Sum_probs=127.4

Q ss_pred             CCCccEEEcCCCc--EEEEecCCeEEEEe---CCceEEEEe--cCCCcccCeEEcCCCCEEEEeCC-CcEEEEc-CC--C
Q 017371           79 NHPEDASMDKNGV--IYTATRDGWIKRLQ---DGTWVNWKF--IDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-ED--G  147 (372)
Q Consensus        79 ~~p~~i~~d~~G~--l~v~~~~g~i~~~~---~g~~~~~~~--~~~~p~~gl~~d~dG~l~v~~~~-~gv~~~~-~~--g  147 (372)
                      ....++++.++|.  |++++.+|.|..|+   .++...+..  ...... .+++.+ ++++++... ..+..++ .+  +
T Consensus        57 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~-~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~  134 (342)
T 1yfq_A           57 HPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGIC-RICKYG-DDKLIAASWDGLIEVIDPRNYGD  134 (342)
T ss_dssp             SCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEE-EEEEET-TTEEEEEETTSEEEEECHHHHTT
T ss_pred             CceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEeccccCCCCceE-EEEeCC-CCEEEEEcCCCeEEEEccccccc
Confidence            3567788988887  77777899999987   334444333  333445 889988 765555434 4466677 33  1


Q ss_pred             -c----EEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCC-Ce--EEEEeC-Cc
Q 017371          148 -V----ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS-NI--TTLVAD-GF  218 (372)
Q Consensus       148 -~----~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t-~~--~~~~~~-~~  218 (372)
                       .    ........  ....+..+++.+++ ++++.                  ..+.|..+|..+ ++  ...... .-
T Consensus       135 ~~~~~~~~~~~~~~--~~~~v~~~~~~~~~-l~~~~------------------~d~~i~i~d~~~~~~~~~~~~~~~~~  193 (342)
T 1yfq_A          135 GVIAVKNLNSNNTK--VKNKIFTMDTNSSR-LIVGM------------------NNSQVQWFRLPLCEDDNGTIEESGLK  193 (342)
T ss_dssp             BCEEEEESCSSSSS--SCCCEEEEEECSSE-EEEEE------------------STTEEEEEESSCCTTCCCEEEECSCS
T ss_pred             ccccccCCeeeEEe--eCCceEEEEecCCc-EEEEe------------------CCCeEEEEECCccccccceeeecCCC
Confidence             1    00000111  11345678888777 55542                  457888898875 32  222222 22


Q ss_pred             cCcceEEEec-CCCEEEEEeCCCCeEEEEEccCC--C--CcceeeeccCC--------CCCCceeEEcCCCCEEEEEecC
Q 017371          219 YFANGVALSR-DEDYVVVCESWKFRCRKYWLKGE--R--KGKLETFAENL--------PGAPDNINLAPDGTFWIAIIKL  285 (372)
Q Consensus       219 ~~~~gi~~~~-dg~~l~v~~~~~~~i~~~~~~g~--~--~~~~~~~~~~~--------~g~p~~i~~d~~G~lwva~~~~  285 (372)
                      .....+++++ +++.++++. .++.|..++.+..  .  ......+....        .+....+++.++|++.++... 
T Consensus       194 ~~i~~i~~~~~~~~~l~~~~-~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-  271 (342)
T 1yfq_A          194 YQIRDVALLPKEQEGYACSS-IDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGS-  271 (342)
T ss_dssp             SCEEEEEECSGGGCEEEEEE-TTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEET-
T ss_pred             CceeEEEECCCCCCEEEEEe-cCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecC-
Confidence            3456789999 998666655 4667777666543  1  11122222111        123567889999976555544 


Q ss_pred             chhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEECC-CCcEEEEEECC-CCCeeccceeeEEECCEEEEEeCCC
Q 017371          286 DARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDP-TGQLMSFVTSGLQVDNHLYVISLTS  363 (372)
Q Consensus       286 ~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~-~g~~~~~~t~~~~~~g~L~igs~~~  363 (372)
                                                       .+.|..+|. +++.+..+... .+    .++++..++..|..++..+
T Consensus       272 ---------------------------------dg~i~vwd~~~~~~~~~~~~~h~~----~v~~~~~~~~~l~s~s~Dg  314 (342)
T 1yfq_A          272 ---------------------------------DGIISCWNLQTRKKIKNFAKFNED----SVVKIACSDNILCLATSDD  314 (342)
T ss_dssp             ---------------------------------TSCEEEEETTTTEEEEECCCCSSS----EEEEEEECSSEEEEEEECT
T ss_pred             ---------------------------------CceEEEEcCccHhHhhhhhcccCC----CceEecCCCCeEEEEecCC
Confidence                                             356777774 47776665543 32    3555553445666666543

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=98.23  E-value=0.0006  Score=64.19  Aligned_cols=185  Identities=9%  Similarity=0.071  Sum_probs=104.2

Q ss_pred             CCccEEEcCCCc-EEEEecCCeEEEEe--CCc------------eEEEEecC------------CCcccCeEEcCCC--C
Q 017371           80 HPEDASMDKNGV-IYTATRDGWIKRLQ--DGT------------WVNWKFID------------SQTLVGLTSTKEG--H  130 (372)
Q Consensus        80 ~p~~i~~d~~G~-l~v~~~~g~i~~~~--~g~------------~~~~~~~~------------~~p~~gl~~d~dG--~  130 (372)
                      ...+++++++|. |.+|+.+|.|..|+  +++            ...+....            +... .+++.+++  .
T Consensus        30 ~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~-~l~~~~~~~~~  108 (447)
T 3dw8_B           30 IISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKIN-KIRWLPQKNAA  108 (447)
T ss_dssp             SEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCC-EEEECCCCSSS
T ss_pred             cEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceE-EEEEcCCCCcc
Confidence            456788999885 55566899999998  333            22232221            3345 89999987  4


Q ss_pred             EEEE-eCCCcEEEEc-CCC-cEEE------------------------------------eeecCCcccccccceEEccC
Q 017371          131 LIIC-DNANGLHKVS-EDG-VENF------------------------------------LSYVNGSKLRFANDVVEASD  171 (372)
Q Consensus       131 l~v~-~~~~gv~~~~-~~g-~~~l------------------------------------~~~~~~~~~~~~~~l~~d~d  171 (372)
                      ++++ ..+..+..++ .++ ....                                    ...........+..+++.++
T Consensus       109 ~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  188 (447)
T 3dw8_B          109 QFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSD  188 (447)
T ss_dssp             EEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTT
T ss_pred             eEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCC
Confidence            5544 4334466666 332 1100                                    00000111234668899999


Q ss_pred             CcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCe-EEEEe--------CCccCcceEEEecCC-CEEEEEeCCCC
Q 017371          172 GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI-TTLVA--------DGFYFANGVALSRDE-DYVVVCESWKF  241 (372)
Q Consensus       172 G~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~-~~~~~--------~~~~~~~gi~~~~dg-~~l~v~~~~~~  241 (372)
                      |+++++                 + .++.|..+|..++. ...+.        ..-.....++++|++ + ++++.+.++
T Consensus       189 ~~~l~s-----------------~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~s~~~dg  249 (447)
T 3dw8_B          189 YETYLS-----------------A-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCN-TFVYSSSKG  249 (447)
T ss_dssp             SSEEEE-----------------E-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTT-EEEEEETTS
T ss_pred             CCEEEE-----------------e-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCc-EEEEEeCCC
Confidence            987775                 2 36788888886322 22111        111224578999998 6 445555567


Q ss_pred             eEEEEEccCCCCcc--eeeeccCCC-----------CCCceeEEcCCCCEEEEEec
Q 017371          242 RCRKYWLKGERKGK--LETFAENLP-----------GAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       242 ~i~~~~~~g~~~~~--~~~~~~~~~-----------g~p~~i~~d~~G~lwva~~~  284 (372)
                      .|..+++...+...  ...+.....           +....++++++|++.++...
T Consensus       250 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  305 (447)
T 3dw8_B          250 TIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY  305 (447)
T ss_dssp             CEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES
T ss_pred             eEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC
Confidence            78888886543211  223321111           13567889999987776543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.23  E-value=0.00084  Score=66.27  Aligned_cols=43  Identities=19%  Similarity=0.264  Sum_probs=29.7

Q ss_pred             ceEEEEEC-CCCcEEEEEECCCCCeeccceeeEEECCEEEEEeCCC
Q 017371          319 GAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTS  363 (372)
Q Consensus       319 ~~~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~igs~~~  363 (372)
                      .+.++.+| .+|+++..+..+.+. ...+ .+...+|++|+++..+
T Consensus       484 dg~l~a~D~~tG~~lw~~~~~~~~-~~~p-~~~~~~G~~yv~~~~G  527 (571)
T 2ad6_A          484 DGYLKALDNKDGKELWNFKMPSGG-IGSP-MTYSFKGKQYIGSMYG  527 (571)
T ss_dssp             TSEEEEEETTTCCEEEEEECSSCC-CSCC-EEEEETTEEEEEEEEC
T ss_pred             CCeEEEEECCCCCEEEEEeCCCCc-Eeee-EEEEECCEEEEEEECC
Confidence            46899999 569999999876543 1111 1223689999998654

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.22  E-value=7.5e-05  Score=74.75  Aligned_cols=196  Identities=15%  Similarity=0.063  Sum_probs=106.5

Q ss_pred             CCccEEEcCCCcEEEEe--c-CC--eEEEEe-CCceEEEEecCCCccc---------CeEEc--CCCC--EEEEeC-CCc
Q 017371           80 HPEDASMDKNGVIYTAT--R-DG--WIKRLQ-DGTWVNWKFIDSQTLV---------GLTST--KEGH--LIICDN-ANG  139 (372)
Q Consensus        80 ~p~~i~~d~~G~l~v~~--~-~g--~i~~~~-~g~~~~~~~~~~~p~~---------gl~~d--~dG~--l~v~~~-~~g  139 (372)
                      ...++++++++..|+..  . ++  .|+... +++.+.+.... ....         ..++.  |||+  |+++.. ...
T Consensus        25 ~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~  103 (662)
T 3azo_A           25 RPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAP-WNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQR  103 (662)
T ss_dssp             CCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTT-CCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCC
T ss_pred             ccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCC-ccccccccccCCccceeeeecCCCeEEEEEECCCCe
Confidence            45566677665555554  1 33  344434 55544432211 1110         23333  8885  444433 246


Q ss_pred             EEEEcCC----C-cEEEeeecCCcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCC-----
Q 017371          140 LHKVSED----G-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS-----  208 (372)
Q Consensus       140 v~~~~~~----g-~~~l~~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t-----  208 (372)
                      |+.++.+    + ...+.............++++.+||+ |+++.....        ..........|+++|.++     
T Consensus       104 l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~--------~~~~~~~~~~i~~~~~~~~~~~~  175 (662)
T 3azo_A          104 LYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFT--------GEGPSDVRRFLAAVPLDGSAAAD  175 (662)
T ss_dssp             EEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEEC--------SSSTTCEEEEEEEEETTSTTTTC
T ss_pred             EEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEeccc--------CCCCCCceeEEEEEECCCCcccc
Confidence            8888843    6 55443211000112456789999996 544321100        000012235799999987     


Q ss_pred             -CeEEEEe-CCccCcceEEEecCCCEEEEEeCCC-------CeEEEEEccC-CCCcceeeeccCCCCCCceeEEcCCCCE
Q 017371          209 -NITTLVA-DGFYFANGVALSRDEDYVVVCESWK-------FRCRKYWLKG-ERKGKLETFAENLPGAPDNINLAPDGTF  278 (372)
Q Consensus       209 -~~~~~~~-~~~~~~~gi~~~~dg~~l~v~~~~~-------~~i~~~~~~g-~~~~~~~~~~~~~~g~p~~i~~d~~G~l  278 (372)
                       ++.+.+. .+......++++|||++|+++....       ..|+.+++++ .+......+.....+....+...+||++
T Consensus       176 ~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l  255 (662)
T 3azo_A          176 RSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSL  255 (662)
T ss_dssp             GGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCE
T ss_pred             CCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeE
Confidence             6776665 4445566789999999998776432       4799999873 3222333333222334567888999997


Q ss_pred             EEEEec
Q 017371          279 WIAIIK  284 (372)
Q Consensus       279 wva~~~  284 (372)
                      ++....
T Consensus       256 ~~~~~~  261 (662)
T 3azo_A          256 IVATDR  261 (662)
T ss_dssp             EEEECT
T ss_pred             EEEECC
Confidence            766543

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=98.22  E-value=3.4e-05  Score=76.14  Aligned_cols=170  Identities=15%  Similarity=0.080  Sum_probs=102.1

Q ss_pred             CccEEEcCCC--cEEEEecCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCCEEEEe-CC----CcEEEEc-CCC-cE
Q 017371           81 PEDASMDKNG--VIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICD-NA----NGLHKVS-EDG-VE  149 (372)
Q Consensus        81 p~~i~~d~~G--~l~v~~~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~l~v~~-~~----~gv~~~~-~~g-~~  149 (372)
                      ....++.++|  .+|++...+.+..++  +|+.+.+.....  . .++++|||+.++.. ..    ..|+.++ .+| .+
T Consensus       112 ~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~-~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~  188 (582)
T 3o4h_A          112 MRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--F-GFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR  188 (582)
T ss_dssp             BEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--C-EEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE
T ss_pred             ceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--c-eEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce
Confidence            3344555555  466665556666777  676666544333  5 88999999866632 22    2488888 666 66


Q ss_pred             EEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCc-cCcceEE---
Q 017371          150 NFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF-YFANGVA---  225 (372)
Q Consensus       150 ~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~-~~~~gi~---  225 (372)
                      .+... .    .....+++.|||+..++..               ......|+++|.++++.+ +..+. .....++   
T Consensus       189 ~l~~~-~----~~~~~~~~SpDG~~l~~~~---------------~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~  247 (582)
T 3o4h_A          189 VFDSG-E----GSFSSASISPGMKVTAGLE---------------TAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTA  247 (582)
T ss_dssp             EECCS-S----CEEEEEEECTTSCEEEEEE---------------CSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSE
T ss_pred             EeecC-C----CccccceECCCCCEEEEcc---------------CCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhcc
Confidence            55321 1    2346789999997554321               112238999999988877 44432 2233455   


Q ss_pred             -----EecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 017371          226 -----LSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       226 -----~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~  284 (372)
                           |+||| .++++...++.+..+.+ |.    ...   ...+....++++ +|.+++....
T Consensus       248 ~~~~~~spdg-~~~~~~~~~g~~~l~~~-g~----~~~---~~~~~v~~~~~s-dg~~l~~~s~  301 (582)
T 3o4h_A          248 ITWLGYLPDG-RLAVVARREGRSAVFID-GE----RVE---APQGNHGRVVLW-RGKLVTSHTS  301 (582)
T ss_dssp             EEEEEECTTS-CEEEEEEETTEEEEEET-TE----EEC---CCSSEEEEEEEE-TTEEEEEEEE
T ss_pred             ccceeEcCCC-cEEEEEEcCCcEEEEEE-CC----eec---cCCCceEEEEec-CCEEEEEEcC
Confidence                 99999 57776666667777776 32    111   122334567788 8877665443

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=98.21  E-value=0.001  Score=62.69  Aligned_cols=244  Identities=9%  Similarity=0.071  Sum_probs=136.0

Q ss_pred             EecCCCCCCCccEEEcC-CCc-EEEEecCCeEEEEe--C---Cc----eEEEEecCCCcccCeEEcCCCCEEEEeCCCc-
Q 017371           72 KVGEGSVNHPEDASMDK-NGV-IYTATRDGWIKRLQ--D---GT----WVNWKFIDSQTLVGLTSTKEGHLIICDNANG-  139 (372)
Q Consensus        72 ~~~~g~~~~p~~i~~d~-~G~-l~v~~~~g~i~~~~--~---g~----~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~g-  139 (372)
                      .+..+.-....++++.+ +|. |..+..+|.|..|+  .   +.    ...+ ...+... .+++.++++++++....| 
T Consensus        57 ~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~-~~~~~~~~~~l~s~s~dg~  134 (437)
T 3gre_A           57 TLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVT-QITMIPNFDAFAVSSKDGQ  134 (437)
T ss_dssp             EECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEE-EEEECTTSSEEEEEETTSE
T ss_pred             eeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEE-EEEEeCCCCEEEEEeCCCE
Confidence            44344345677899999 885 55566899999998  3   32    1122 2233455 999999998666544433 


Q ss_pred             EEEEc-C---CC--cEEEeee----cCCc---ccccccceE--EccCCcEEEEeCCCCCCCcccccccccccCCCeEEEE
Q 017371          140 LHKVS-E---DG--VENFLSY----VNGS---KLRFANDVV--EASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKY  204 (372)
Q Consensus       140 v~~~~-~---~g--~~~l~~~----~~~~---~~~~~~~l~--~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~  204 (372)
                      +..++ .   ++  ...+...    ....   ....+..+.  ..+++.+.++                 +..++.|..+
T Consensus       135 i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----------------~~~d~~i~iw  197 (437)
T 3gre_A          135 IIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVA-----------------LTNLSRVIIF  197 (437)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEE-----------------EETTSEEEEE
T ss_pred             EEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEE-----------------EeCCCeEEEE
Confidence            55555 2   34  2211100    0000   001122222  3356665554                 2356889999


Q ss_pred             eCCCCeEEEEeCC---ccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeE----EcCCCC
Q 017371          205 DPSSNITTLVADG---FYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNIN----LAPDGT  277 (372)
Q Consensus       205 d~~t~~~~~~~~~---~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~----~d~~G~  277 (372)
                      |..+++.......   ......++++|+++.++.+. .++.|..+++...+  ....+..........++    +.++|.
T Consensus       198 d~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~-~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~s~~~~  274 (437)
T 3gre_A          198 DIRTLERLQIIENSPRHGAVSSICIDEECCVLILGT-TRGIIDIWDIRFNV--LIRSWSFGDHAPITHVEVCQFYGKNSV  274 (437)
T ss_dssp             ETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEE-TTSCEEEEETTTTE--EEEEEBCTTCEEEEEEEECTTTCTTEE
T ss_pred             eCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEc-CCCeEEEEEcCCcc--EEEEEecCCCCceEEEEeccccCCCcc
Confidence            9887776554433   23456789999998666554 45678888876421  11122101111123453    335565


Q ss_pred             EEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEECC-CCcEEEEEECCCCC---------------
Q 017371          278 FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQ---------------  341 (372)
Q Consensus       278 lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~---------------  341 (372)
                      +.++...                                  .+.|..+|. +++.+..+....+.               
T Consensus       275 ~l~s~~~----------------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  320 (437)
T 3gre_A          275 IVVGGSS----------------------------------KTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEE  320 (437)
T ss_dssp             EEEEEST----------------------------------TEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGG
T ss_pred             EEEEEcC----------------------------------CCcEEEEEcCCCcEEEEEEcCCCCCccceeccccccccc
Confidence            5555544                                  456777774 47777776543211               


Q ss_pred             -------eeccceeeEEECCEEEEEeCCCCeEEEEeC
Q 017371          342 -------LMSFVTSGLQVDNHLYVISLTSNFIGKVQL  371 (372)
Q Consensus       342 -------~~~~~t~~~~~~g~L~igs~~~~~i~~~~~  371 (372)
                             ....++++...++++.+..-....|.++++
T Consensus       321 ~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~  357 (437)
T 3gre_A          321 LNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSL  357 (437)
T ss_dssp             CCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEET
T ss_pred             ceecccccCCceEEEEECCceEEEecCCCCeEEEEEC
Confidence                   123467777777766666666678888775

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=98.20  E-value=0.00017  Score=76.35  Aligned_cols=142  Identities=11%  Similarity=0.064  Sum_probs=86.5

Q ss_pred             cEEEcCCC-cEEEEecCCeEE-EEe--CCceEEEEecCCCcccCeEEcCCCCEE-EEeCCCcEEEEc-CCC-cEEEeeec
Q 017371           83 DASMDKNG-VIYTATRDGWIK-RLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLI-ICDNANGLHKVS-EDG-VENFLSYV  155 (372)
Q Consensus        83 ~i~~d~~G-~l~v~~~~g~i~-~~~--~g~~~~~~~~~~~p~~gl~~d~dG~l~-v~~~~~gv~~~~-~~g-~~~l~~~~  155 (372)
                      ++++. +| .|+++..++.|+ .++  .++.+.+......+. .+++.|||+.+ ++.....++.++ .+| ...+....
T Consensus       342 ~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~-~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~  419 (1045)
T 1k32_A          342 RRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVF-AMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSR  419 (1045)
T ss_dssp             EECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEE-EEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS
T ss_pred             eeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCcccee-eeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCC
Confidence            45555 55 455555566788 777  445444432224456 89999999754 444445688888 667 54443221


Q ss_pred             CCcccccccceEEccCCcEEEEeCC-CCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEE
Q 017371          156 NGSKLRFANDVVEASDGSLYFTVSS-SKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVV  234 (372)
Q Consensus       156 ~~~~~~~~~~l~~d~dG~i~vtd~~-~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~  234 (372)
                      .    ..+..+++.+||+..++... ..+.        ......+.|+.+|.++++...+.........++|++||++++
T Consensus       420 ~----~~v~~~~~SpDG~~la~~~~~~~~~--------~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~  487 (1045)
T 1k32_A          420 E----AMITDFTISDNSRFIAYGFPLKHGE--------TDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLY  487 (1045)
T ss_dssp             S----SCCCCEEECTTSCEEEEEEEECSST--------TCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEE
T ss_pred             C----CCccceEECCCCCeEEEEecCcccc--------ccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEE
Confidence            1    23468899999974443211 0000        001123579999998888665554445556789999999998


Q ss_pred             EEeC
Q 017371          235 VCES  238 (372)
Q Consensus       235 v~~~  238 (372)
                      +...
T Consensus       488 ~~s~  491 (1045)
T 1k32_A          488 YLSY  491 (1045)
T ss_dssp             EEES
T ss_pred             EEec
Confidence            8764

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.19  E-value=0.00016  Score=66.25  Aligned_cols=132  Identities=14%  Similarity=0.164  Sum_probs=84.3

Q ss_pred             eEEEEeCCCCeEEEEe-------CCccCcceEEE--ecCCC--EEEEEeCCCCeEEEEEccCCC---Ccc--eeeeccCC
Q 017371          200 QLLKYDPSSNITTLVA-------DGFYFANGVAL--SRDED--YVVVCESWKFRCRKYWLKGER---KGK--LETFAENL  263 (372)
Q Consensus       200 ~v~~~d~~t~~~~~~~-------~~~~~~~gi~~--~~dg~--~l~v~~~~~~~i~~~~~~g~~---~~~--~~~~~~~~  263 (372)
                      ++|.+|+++++++.+.       ..+..|.|+|+  +++++  ++|+++.. .++..|.+....   ...  ...|  .+
T Consensus       102 ~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~-G~~~q~~l~~~~~g~~~~~lVR~f--~l  178 (355)
T 3amr_A          102 EIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKE-GEFEQYELKADKNGYISGKKVRAF--KM  178 (355)
T ss_dssp             EEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSS-SEEEEEEEEECTTSCEEEEEEEEE--EC
T ss_pred             EEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCC-CeEEEEEEEeCCCCcccceEEEEe--cC
Confidence            3455688888777662       44578999999  66443  56766654 688888774221   111  1222  25


Q ss_pred             CCCCceeEEcC-CCCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEECCC------CcEEEEEE
Q 017371          264 PGAPDNINLAP-DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED------GTIIRNLV  336 (372)
Q Consensus       264 ~g~p~~i~~d~-~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~------g~~~~~~~  336 (372)
                      ++.|.++.+|+ .|.||++...                                   .+|.+|+.+      ++++..+.
T Consensus       179 gsq~EgcvvDd~~g~Lyv~eEd-----------------------------------~GIw~~da~p~~~~~~~~v~~~~  223 (355)
T 3amr_A          179 NSQTEGMAADDEYGRLYIAEED-----------------------------------EAIWKFSAEPDGGSNGTVIDRAD  223 (355)
T ss_dssp             SSCEEEEEEETTTTEEEEEETT-----------------------------------TEEEEEECSTTSCSCCEEEEEBS
T ss_pred             CCCcceEEEcCCCCeEEEeccc-----------------------------------ceEEEEeCCcCCCCCceEEEEec
Confidence            56789999985 5799999976                                   258999844      33444332


Q ss_pred             CCCCCeeccceeeEEE-C----CEEEEEeCCCCeEEEEeC
Q 017371          337 DPTGQLMSFVTSGLQV-D----NHLYVISLTSNFIGKVQL  371 (372)
Q Consensus       337 ~~~g~~~~~~t~~~~~-~----g~L~igs~~~~~i~~~~~  371 (372)
                        .+.....+..+... .    ++|++.+-.++.+.+++.
T Consensus       224 --~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr  261 (355)
T 3amr_A          224 --GRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDR  261 (355)
T ss_dssp             --SSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEES
T ss_pred             --CCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEEC
Confidence              23323356666553 2    478888888888888875

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=98.16  E-value=0.00028  Score=64.12  Aligned_cols=186  Identities=13%  Similarity=-0.011  Sum_probs=100.4

Q ss_pred             CCCCCCCccEEEcCCCc-EEEEe-c---CCeEEEEe--CCceEEEE--ecCCCcccCeEEcCC---CC-EEEEeCCCcEE
Q 017371           75 EGSVNHPEDASMDKNGV-IYTAT-R---DGWIKRLQ--DGTWVNWK--FIDSQTLVGLTSTKE---GH-LIICDNANGLH  141 (372)
Q Consensus        75 ~g~~~~p~~i~~d~~G~-l~v~~-~---~g~i~~~~--~g~~~~~~--~~~~~p~~gl~~d~d---G~-l~v~~~~~gv~  141 (372)
                      .+.-....++++.++|. +.++. .   +|.|..|+  +++.....  ....... .+++.++   |+ |+.+.....+.
T Consensus        15 ~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~l~~~~~dg~i~   93 (357)
T 3i2n_A           15 KGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIK-CGTFGATSLQQRYLATGDFGGNLH   93 (357)
T ss_dssp             EECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEE-EEECTTCCTTTCCEEEEETTSCEE
T ss_pred             cCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEE-EEEEcCCCCCCceEEEecCCCeEE
Confidence            33334677899999884 44333 3   88899998  55543221  2223345 8899987   55 44444444577


Q ss_pred             EEc-CCC---cEEEeeecCC--cccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCe-EEEE
Q 017371          142 KVS-EDG---VENFLSYVNG--SKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI-TTLV  214 (372)
Q Consensus       142 ~~~-~~g---~~~l~~~~~~--~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~-~~~~  214 (372)
                      .++ .++   ...+... .+  ....+..++++.++|+..++-.                 .++.|..+|..+++ ....
T Consensus        94 iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~s~~~~~l~~~~-----------------~d~~i~vwd~~~~~~~~~~  155 (357)
T 3i2n_A           94 IWNLEAPEMPVYSVKGH-KEIINAIDGIGGLGIGEGAPEIVTGS-----------------RDGTVKVWDPRQKDDPVAN  155 (357)
T ss_dssp             EECTTSCSSCSEEECCC-SSCEEEEEEESGGGCC-CCCEEEEEE-----------------TTSCEEEECTTSCSSCSEE
T ss_pred             EEeCCCCCccEEEEEec-ccceEEEeeccccccCCCccEEEEEe-----------------CCCeEEEEeCCCCCCccee
Confidence            777 433   2322211 11  0111122235567887666532                 46778888877654 2222


Q ss_pred             eCCcc-----CcceEE----EecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcC---CCCEEEEE
Q 017371          215 ADGFY-----FANGVA----LSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAP---DGTFWIAI  282 (372)
Q Consensus       215 ~~~~~-----~~~gi~----~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~---~G~lwva~  282 (372)
                      .....     ....++    ++++++.++.+. .++.|..+++...+.   ... .........+++++   +|++.++.
T Consensus       156 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~---~~~-~~~~~~v~~~~~~~~~~~~~~l~~~  230 (357)
T 3i2n_A          156 MEPVQGENKRDCWTVAFGNAYNQEERVVCAGY-DNGDIKLFDLRNMAL---RWE-TNIKNGVCSLEFDRKDISMNKLVAT  230 (357)
T ss_dssp             ECCCTTSCCCCEEEEEEECCCC-CCCEEEEEE-TTSEEEEEETTTTEE---EEE-EECSSCEEEEEESCSSSSCCEEEEE
T ss_pred             ccccCCCCCCceEEEEEEeccCCCCCEEEEEc-cCCeEEEEECccCce---eee-cCCCCceEEEEcCCCCCCCCEEEEE
Confidence            21111     222344    678998666554 456898898865432   111 12333467788888   78766655


Q ss_pred             ec
Q 017371          283 IK  284 (372)
Q Consensus       283 ~~  284 (372)
                      ..
T Consensus       231 ~~  232 (357)
T 3i2n_A          231 SL  232 (357)
T ss_dssp             ES
T ss_pred             CC
Confidence            44

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.15  E-value=0.0015  Score=65.89  Aligned_cols=40  Identities=20%  Similarity=0.258  Sum_probs=28.1

Q ss_pred             ceEEEEEC-CCCcEEEEEECCCCCeeccceeeE-EECCEEEEEeC
Q 017371          319 GAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGL-QVDNHLYVISL  361 (372)
Q Consensus       319 ~~~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~-~~~g~L~igs~  361 (372)
                      .+.+..+| .+|+++..+..+.+..   .+-+. +.+|+.|++..
T Consensus       497 dg~l~a~D~~tG~~lw~~~~~~~~~---~~p~~y~~~G~~~v~~~  538 (677)
T 1kb0_A          497 DGRLVAYHAATGEKLWEAPTGTGVV---AAPSTYMVDGRQYVSVA  538 (677)
T ss_dssp             TSEEEEEETTTCCEEEEEECSSCCC---SCCEEEEETTEEEEEEE
T ss_pred             CCcEEEEECCCCceeeeeeCCCCcc---cCCEEEEeCCEEEEEEe
Confidence            47899999 4699999998876542   12223 36888888763

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=98.15  E-value=5.9e-05  Score=70.40  Aligned_cols=183  Identities=10%  Similarity=0.087  Sum_probs=104.5

Q ss_pred             CCccEEEcCCCc--EEEE----------ecCCeEEEEe--CCce---EEEEecCCCcccCeEEcCCCCEEEEe-CCCcEE
Q 017371           80 HPEDASMDKNGV--IYTA----------TRDGWIKRLQ--DGTW---VNWKFIDSQTLVGLTSTKEGHLIICD-NANGLH  141 (372)
Q Consensus        80 ~p~~i~~d~~G~--l~v~----------~~~g~i~~~~--~g~~---~~~~~~~~~p~~gl~~d~dG~l~v~~-~~~gv~  141 (372)
                      ...++++.++|.  ++++          ..+|.|..|+  .++.   ........... .+++.++|+++++. ....+.
T Consensus        14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg~v~   92 (416)
T 2pm9_A           14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFN-DLDWSHNNKIIAGALDNGSLE   92 (416)
T ss_dssp             ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEE-EEEECSSSSCEEEEESSSCEE
T ss_pred             hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceE-EEEECCCCCeEEEEccCCeEE
Confidence            455677778774  4455          4567788888  3321   11111223445 89999999755554 334577


Q ss_pred             EEc-CC---CcEEEeeecCCcccccccceEEccC-CcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCe------
Q 017371          142 KVS-ED---GVENFLSYVNGSKLRFANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI------  210 (372)
Q Consensus       142 ~~~-~~---g~~~l~~~~~~~~~~~~~~l~~d~d-G~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~------  210 (372)
                      .++ ..   +...+.. ..+. ...+..+++.++ ++++++-.                 .++.|..+|..+++      
T Consensus        93 vw~~~~~~~~~~~~~~-~~~h-~~~v~~~~~~~~~~~~l~s~~-----------------~dg~v~iwd~~~~~~~~~~~  153 (416)
T 2pm9_A           93 LYSTNEANNAINSMAR-FSNH-SSSVKTVKFNAKQDNVLASGG-----------------NNGEIFIWDMNKCTESPSNY  153 (416)
T ss_dssp             EECCSSTTSCCCEEEE-CCCS-SSCCCEEEECSSSTTBEEEEC-----------------SSSCEEBCBTTTTSSCTTTC
T ss_pred             Eeecccccccccchhh-ccCC-ccceEEEEEcCCCCCEEEEEc-----------------CCCeEEEEECCCCccccccc
Confidence            777 44   2212211 1111 135678999998 77666532                 46778888887654      


Q ss_pred             EEEEe----CCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCC-----CCCCceeEEcCCC-CEEE
Q 017371          211 TTLVA----DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENL-----PGAPDNINLAPDG-TFWI  280 (372)
Q Consensus       211 ~~~~~----~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~-----~g~p~~i~~d~~G-~lwv  280 (372)
                      .....    ........+++++++..++++...+..|..+++...+  ....+....     ......+++.++| ++.+
T Consensus       154 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  231 (416)
T 2pm9_A          154 TPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKK--EVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVA  231 (416)
T ss_dssp             CCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTE--EEEEECCCCCSSCCCCCEEEEEECSSCTTEEE
T ss_pred             cccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCC--cceEEeccccccccCCceEEEEECCCCCCEEE
Confidence            21111    1123346799999944466666667789989886532  111221111     3346678899998 4555


Q ss_pred             EEec
Q 017371          281 AIIK  284 (372)
Q Consensus       281 a~~~  284 (372)
                      +...
T Consensus       232 ~~~~  235 (416)
T 2pm9_A          232 TATG  235 (416)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            5443

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=98.14  E-value=0.00015  Score=74.13  Aligned_cols=185  Identities=14%  Similarity=0.103  Sum_probs=106.8

Q ss_pred             CCCccEEEcCCC-cEEEEecCCeEEEEe--CCceEEEE---ecCCCcccCeEEcCC--CCEEEEeCC-CcEEEEc-CCC-
Q 017371           79 NHPEDASMDKNG-VIYTATRDGWIKRLQ--DGTWVNWK---FIDSQTLVGLTSTKE--GHLIICDNA-NGLHKVS-EDG-  147 (372)
Q Consensus        79 ~~p~~i~~d~~G-~l~v~~~~g~i~~~~--~g~~~~~~---~~~~~p~~gl~~d~d--G~l~v~~~~-~gv~~~~-~~g-  147 (372)
                      ....++++.++| .|.+++.+|.|..|+  ++......   ...+... ++++.++  |+++++... ..|..++ .++ 
T Consensus        10 ~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~-~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~   88 (753)
T 3jro_A           10 ELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVW-RVDWAHPKFGTILASCSYDGKVLIWKEENGR   88 (753)
T ss_dssp             CCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEE-EEEECCTTSCSEEEEEETTSCEEEEEEETTE
T ss_pred             ceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceE-EEEecCCCCCCEEEEEeCCCeEEEEECCCCc
Confidence            355677888877 466677899999998  33333222   1223345 8899876  776655444 3477777 555 


Q ss_pred             cEEEeeecCCcccccccceEEccC--CcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCe---EEEEeCCccCcc
Q 017371          148 VENFLSYVNGSKLRFANDVVEASD--GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI---TTLVADGFYFAN  222 (372)
Q Consensus       148 ~~~l~~~~~~~~~~~~~~l~~d~d--G~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~---~~~~~~~~~~~~  222 (372)
                      ....... .+. ...+..+++.++  |+++++-                 ..+|.|..+|..++.   ...+........
T Consensus        89 ~~~~~~~-~~h-~~~V~~v~~sp~~~~~~l~sg-----------------s~dg~I~vwdl~~~~~~~~~~~~~~~~~v~  149 (753)
T 3jro_A           89 WSQIAVH-AVH-SASVNSVQWAPHEYGPLLLVA-----------------SSDGKVSVVEFKENGTTSPIIIDAHAIGVN  149 (753)
T ss_dssp             EEEEEEE-CCC-SSCEEEEEECCGGGCSEEEEE-----------------ETTSEEEEEECCSSSCCCCEEEECCSSCEE
T ss_pred             ccccccc-cCC-CCCeEEEEECCCCCCCEEEEE-----------------eCCCcEEEEEeecCCCcceeEeecCCCceE
Confidence            3332221 111 135678889888  8776653                 256788888876552   222222223345


Q ss_pred             eEEEec-------------CCCEEEEEeCCCCeEEEEEccCCCCc-ceeeeccCCCCCCceeEEcCC---CCEEEEEec
Q 017371          223 GVALSR-------------DEDYVVVCESWKFRCRKYWLKGERKG-KLETFAENLPGAPDNINLAPD---GTFWIAIIK  284 (372)
Q Consensus       223 gi~~~~-------------dg~~l~v~~~~~~~i~~~~~~g~~~~-~~~~~~~~~~g~p~~i~~d~~---G~lwva~~~  284 (372)
                      .++++|             +++.++.+ ..++.|..+++...... ..........+....+++.++   |++.++...
T Consensus       150 ~l~~~p~~~~~~~~~~~~~d~~~l~sg-s~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~  227 (753)
T 3jro_A          150 SASWAPATIEEDGEHNGTKESRKFVTG-GADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ  227 (753)
T ss_dssp             EEEECCCC---------CGGGCCEEEE-ETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEES
T ss_pred             EEEecCcccccccccccCCCCCEEEEE-ECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEec
Confidence            678888             47655554 45667888887653211 111111123334567888888   766665544

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=98.13  E-value=0.0043  Score=55.70  Aligned_cols=181  Identities=11%  Similarity=0.107  Sum_probs=102.3

Q ss_pred             CCCccEEEcCCCc-EEEEecCCeEEEEe--CCceEE-EEecCCCcccCeEEcCCCCEEEEeCC-CcEEEEcCCC-cEEEe
Q 017371           79 NHPEDASMDKNGV-IYTATRDGWIKRLQ--DGTWVN-WKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVSEDG-VENFL  152 (372)
Q Consensus        79 ~~p~~i~~d~~G~-l~v~~~~g~i~~~~--~g~~~~-~~~~~~~p~~gl~~d~dG~l~v~~~~-~gv~~~~~~g-~~~l~  152 (372)
                      ....++++.++|. |+.+..+|.|..++  .+.... ......... ...+.++++.+++... ..+..++..+ .....
T Consensus        87 ~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~  165 (340)
T 4aow_A           87 HFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVL-SVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTV  165 (340)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE-EEEECTTSSCEEEEETTSCEEEECTTSCEEEEE
T ss_pred             CCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCcee-EEEEeecCccceeecCCCeEEEEEeCCCceEEE
Confidence            4567889999886 55566899998888  333222 222223334 6667777765555433 4466666333 22111


Q ss_pred             eecCCcccccccceEEccCC--cEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCcc-CcceEEEecC
Q 017371          153 SYVNGSKLRFANDVVEASDG--SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFY-FANGVALSRD  229 (372)
Q Consensus       153 ~~~~~~~~~~~~~l~~d~dG--~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~-~~~gi~~~~d  229 (372)
                      . ..+. ...+..+++.+++  .+.++-                 ..++.|..+|..+++......+.. ..+.++++||
T Consensus       166 ~-~~~~-~~~v~~~~~~~~~~~~~~~s~-----------------~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~  226 (340)
T 4aow_A          166 Q-DESH-SEWVSCVRFSPNSSNPIIVSC-----------------GWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPD  226 (340)
T ss_dssp             C-SSSC-SSCEEEEEECSCSSSCEEEEE-----------------ETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred             E-eccc-cCcccceEEccCCCCcEEEEE-----------------cCCCEEEEEECCCCceeeEecCCCCcEEEEEECCC
Confidence            1 1111 1233455555543  444442                 245678888888777665554433 2357899999


Q ss_pred             CCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 017371          230 EDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       230 g~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~  284 (372)
                      ++.++.+ ..++.|..+++...+  ....+.  .......+.+.+++.+.++...
T Consensus       227 ~~~l~s~-s~Dg~i~iwd~~~~~--~~~~~~--~~~~v~~~~~~~~~~~~~~~~d  276 (340)
T 4aow_A          227 GSLCASG-GKDGQAMLWDLNEGK--HLYTLD--GGDIINALCFSPNRYWLCAATG  276 (340)
T ss_dssp             SSEEEEE-ETTCEEEEEETTTTE--EEEEEE--CSSCEEEEEECSSSSEEEEEET
T ss_pred             CCEEEEE-eCCCeEEEEEeccCc--eeeeec--CCceEEeeecCCCCceeeccCC
Confidence            9965554 456678888876432  112221  1223456778888877766654

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=98.13  E-value=0.00062  Score=69.29  Aligned_cols=251  Identities=14%  Similarity=0.061  Sum_probs=126.0

Q ss_pred             cEEEcCCCc-EEEEecC---------CeEEEEe--CCceEEEEecCCCcccCeEEcCCCCEEEEeCCCcEEEEc-CCC-c
Q 017371           83 DASMDKNGV-IYTATRD---------GWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-V  148 (372)
Q Consensus        83 ~i~~d~~G~-l~v~~~~---------g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~-~~g-~  148 (372)
                      ++++.+||. |.++..+         +.++.++  +|+.+.+....+... ..++.|||+..+......|+.++ .+| .
T Consensus        66 ~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~-~~~~SPdG~~la~~~~~~i~~~~~~~~~~  144 (740)
T 4a5s_A           66 DYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQ-WVTWSPVGHKLAYVWNNDIYVKIEPNLPS  144 (740)
T ss_dssp             EEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEE-EEEECSSTTCEEEEETTEEEEESSTTSCC
T ss_pred             ceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcccCCCcce-eeEECCCCCEEEEEECCeEEEEECCCCce
Confidence            377899995 5555432         5667788  555544332233345 77899999633322345688888 555 4


Q ss_pred             EEEeee-cCCcc-------------cccccceEEccCCc-EEEEeC-CCCCCCccccc--------------cc---ccc
Q 017371          149 ENFLSY-VNGSK-------------LRFANDVVEASDGS-LYFTVS-SSKYLPHEYCL--------------DI---LEG  195 (372)
Q Consensus       149 ~~l~~~-~~~~~-------------~~~~~~l~~d~dG~-i~vtd~-~~~~~~~~~~~--------------~~---~~~  195 (372)
                      ..+... .....             +.....+++.|||+ |.++.. .+  ....+..              .+   ..+
T Consensus       145 ~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~--~v~~~~~~~~~~~~~~~~~~~~~~yp~~G  222 (740)
T 4a5s_A          145 YRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDT--EVPLIEYSFYSDESLQYPKTVRVPYPKAG  222 (740)
T ss_dssp             EECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECT--TCCEEEEEECCSTTCSSCEEEEEECCBTT
T ss_pred             EEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEccc--CCceEEEEeecCCCCCCCcceeecCCCCc
Confidence            433221 00000             12224588999996 444311 11  0000000              00   011


Q ss_pred             --cCCCeEEEEeCCC---C---eEEEEeC------CccCcceEEEecCCCEEEE-EeCCC--CeEEEEEccCCC----Cc
Q 017371          196 --KPHGQLLKYDPSS---N---ITTLVAD------GFYFANGVALSRDEDYVVV-CESWK--FRCRKYWLKGER----KG  254 (372)
Q Consensus       196 --~~~g~v~~~d~~t---~---~~~~~~~------~~~~~~gi~~~~dg~~l~v-~~~~~--~~i~~~~~~g~~----~~  254 (372)
                        .+...|+.+|.++   +   +...+..      .......++|+|||+.+++ .....  ..|+.+++++.+    ..
T Consensus       223 ~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~  302 (740)
T 4a5s_A          223 AVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCL  302 (740)
T ss_dssp             SCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEEC
T ss_pred             CcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCcccccee
Confidence              1223688999987   6   4444432      1222346789999984443 33222  258888877643    11


Q ss_pred             cee-eeccCCCCC-----CceeEEcCCCCEEE-EEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEECC
Q 017371          255 KLE-TFAENLPGA-----PDNINLAPDGTFWI-AIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE  327 (372)
Q Consensus       255 ~~~-~~~~~~~g~-----p~~i~~d~~G~lwv-a~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~  327 (372)
                      ... ...+...+.     +....+.+||..++ ....                               ......|+.++.
T Consensus       303 ~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~-------------------------------~~G~~~l~~~~~  351 (740)
T 4a5s_A          303 VARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISN-------------------------------EEGYRHICYFQI  351 (740)
T ss_dssp             GGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEEC-------------------------------TTSCEEEEEEET
T ss_pred             EEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEc-------------------------------CCCceEEEEEEC
Confidence            111 111112222     34678899997332 2211                               111457888887


Q ss_pred             CCcEEEEEECCCCCeeccceee-EEECCEEEEEeCC------CCeEEEEeC
Q 017371          328 DGTIIRNLVDPTGQLMSFVTSG-LQVDNHLYVISLT------SNFIGKVQL  371 (372)
Q Consensus       328 ~g~~~~~~~~~~g~~~~~~t~~-~~~~g~L~igs~~------~~~i~~~~~  371 (372)
                      +|.....+..  |. .. +..+ ..+++.||+.+..      ...|.++++
T Consensus       352 ~~~~~~~lT~--g~-~~-v~~~~~~d~~~i~f~~~~~~~~~~~~~ly~v~~  398 (740)
T 4a5s_A          352 DKKDCTFITK--GT-WE-VIGIEALTSDYLYYISNEYKGMPGGRNLYKIQL  398 (740)
T ss_dssp             TCSSCEESCC--SS-SC-EEEEEEECSSEEEEEESCGGGCTTCBEEEEEET
T ss_pred             CCCceEeccc--CC-EE-EEEEEEEeCCEEEEEEecCCCCCceeEEEEEEC
Confidence            7655443332  21 11 2222 2446778877754      235555554

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=98.13  E-value=0.0012  Score=66.84  Aligned_cols=186  Identities=9%  Similarity=0.080  Sum_probs=102.0

Q ss_pred             cEEEcCCCc-EEEEe-cCC----eEEEEe--CCceEEEEecCCCcccCeEEcCCCC-EEEEeCCCc--------------
Q 017371           83 DASMDKNGV-IYTAT-RDG----WIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNANG--------------  139 (372)
Q Consensus        83 ~i~~d~~G~-l~v~~-~~g----~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~-l~v~~~~~g--------------  139 (372)
                      ++++.+||+ |.++. ..|    .|+.++  +|+............ ++++.+||+ |+++.....              
T Consensus       129 ~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~-~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~  207 (710)
T 2xdw_A          129 GYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFS-CMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLH  207 (710)
T ss_dssp             EEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSC-CEEECTTSSEEEEEECCCCSSCCSSSCCCCCCC
T ss_pred             EEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccc-eEEEEeCCCEEEEEEECCccccccccccccCCC
Confidence            577888985 43443 333    688888  566544322222234 799999996 666543332              


Q ss_pred             --EEEEc-CCC-cE-EEeeecCCcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCC-----
Q 017371          140 --LHKVS-EDG-VE-NFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS-----  208 (372)
Q Consensus       140 --v~~~~-~~g-~~-~l~~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t-----  208 (372)
                        |++++ .++ .+ .+....... .....++.+.+||+ |+++...             .......|+.+|.++     
T Consensus       208 ~~v~~~~l~t~~~~~~~v~~~~~~-~~~~~~~~~SpDg~~l~~~~~~-------------~~~~~~~l~~~d~~~~~~~~  273 (710)
T 2xdw_A          208 QKLYYHVLGTDQSEDILCAEFPDE-PKWMGGAELSDDGRYVLLSIRE-------------GCDPVNRLWYCDLQQESNGI  273 (710)
T ss_dssp             CEEEEEETTSCGGGCEEEECCTTC-TTCEEEEEECTTSCEEEEEEEC-------------SSSSCCEEEEEEGGGSSSSS
T ss_pred             CEEEEEECCCCcccceEEeccCCC-CeEEEEEEEcCCCCEEEEEEEc-------------cCCCccEEEEEECccccccc
Confidence              77777 444 21 222111111 12344778999996 4443210             001246789998765     


Q ss_pred             -C--eEEEEeCCccCcceEEEecCCCEEEEEeCC---CCeEEEEEccCCCCcceeeeccCCC-CCCceeEEcCCCCEEEE
Q 017371          209 -N--ITTLVADGFYFANGVALSRDEDYVVVCESW---KFRCRKYWLKGERKGKLETFAENLP-GAPDNINLAPDGTFWIA  281 (372)
Q Consensus       209 -~--~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~---~~~i~~~~~~g~~~~~~~~~~~~~~-g~p~~i~~d~~G~lwva  281 (372)
                       +  +.+.+..... .....+++||+.+|+....   +.+|+.+++++........+..... ....++...+++.++++
T Consensus       274 ~~~~~~~~l~~~~~-~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~  352 (710)
T 2xdw_A          274 TGILKWVKLIDNFE-GEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLC  352 (710)
T ss_dssp             CSSCCCEEEECSSS-SCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEE
T ss_pred             CCccceEEeeCCCC-cEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEE
Confidence             4  4555544322 2233588999989887643   3479999987643222233332222 12345666656666666


Q ss_pred             Eec
Q 017371          282 IIK  284 (372)
Q Consensus       282 ~~~  284 (372)
                      ...
T Consensus       353 ~~~  355 (710)
T 2xdw_A          353 YLH  355 (710)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=98.12  E-value=0.0051  Score=58.26  Aligned_cols=182  Identities=12%  Similarity=0.119  Sum_probs=97.7

Q ss_pred             CCCccEEEcCCCcEEEEecCCeEEEEe--CCceE-EEEecCCCcccCeEEc--CCCCEEEE-eCCCcEEEEc-CCC--cE
Q 017371           79 NHPEDASMDKNGVIYTATRDGWIKRLQ--DGTWV-NWKFIDSQTLVGLTST--KEGHLIIC-DNANGLHKVS-EDG--VE  149 (372)
Q Consensus        79 ~~p~~i~~d~~G~l~v~~~~g~i~~~~--~g~~~-~~~~~~~~p~~gl~~d--~dG~l~v~-~~~~gv~~~~-~~g--~~  149 (372)
                      ....++++.+++.+..++.+|.|..|+  +++.. .+....+... .+++.  +++.++++ ..+..+..++ .++  ..
T Consensus       163 ~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~-~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~  241 (464)
T 3v7d_B          163 GGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVR-CLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVP  241 (464)
T ss_dssp             SCEEEEEECSTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE-EEEEEESSSCEEEEEEETTSCEEEEECCCCCCC-
T ss_pred             cCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcEEEEECCCCCccE-EEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccc
Confidence            456678888888888888999999999  55433 2322223334 67776  56665554 4334466677 443  21


Q ss_pred             EEeeecCC----------------cccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEE
Q 017371          150 NFLSYVNG----------------SKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL  213 (372)
Q Consensus       150 ~l~~~~~~----------------~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~  213 (372)
                      ........                ...+...-..+.++|++.++                 +..++.|..+|..+++...
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~-----------------~~~d~~i~vwd~~~~~~~~  304 (464)
T 3v7d_B          242 DHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVS-----------------GSYDNTLIVWDVAQMKCLY  304 (464)
T ss_dssp             -----CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEE-----------------EETTSCEEEEETTTTEEEE
T ss_pred             cccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEE-----------------EeCCCeEEEEECCCCcEEE
Confidence            11000000                00000011223444554443                 2356789999988777655


Q ss_pred             EeCCc-cCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 017371          214 VADGF-YFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       214 ~~~~~-~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~  284 (372)
                      ...+. .....++++++++.++.+. .++.|..+++...+  ....+. ...+....+..+  +++.++...
T Consensus       305 ~~~~~~~~v~~~~~~~~~~~l~sg~-~dg~i~vwd~~~~~--~~~~~~-~h~~~v~~~~~~--~~~l~s~s~  370 (464)
T 3v7d_B          305 ILSGHTDRIYSTIYDHERKRCISAS-MDTTIRIWDLENGE--LMYTLQ-GHTALVGLLRLS--DKFLVSAAA  370 (464)
T ss_dssp             EECCCSSCEEEEEEETTTTEEEEEE-TTSCEEEEETTTTE--EEEEEC-CCSSCEEEEEEC--SSEEEEEET
T ss_pred             EecCCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCc--EEEEEe-CCCCcEEEEEEc--CCEEEEEeC
Confidence            44432 3345788999999666554 46678888875432  112222 222334456665  445444443

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=98.08  E-value=0.00025  Score=65.77  Aligned_cols=151  Identities=13%  Similarity=0.115  Sum_probs=94.9

Q ss_pred             CCccEEEcCCCcEEEEecCCeEEEEe--CCceEEEEec--CC-CcccCeEEcCCCCEEEEeCC-C--c--EEEEc-CCC-
Q 017371           80 HPEDASMDKNGVIYTATRDGWIKRLQ--DGTWVNWKFI--DS-QTLVGLTSTKEGHLIICDNA-N--G--LHKVS-EDG-  147 (372)
Q Consensus        80 ~p~~i~~d~~G~l~v~~~~g~i~~~~--~g~~~~~~~~--~~-~p~~gl~~d~dG~l~v~~~~-~--g--v~~~~-~~g-  147 (372)
                      ...++++.++|.+.++..++.+.+++  +++.......  .. ... .+++.++|..+++... .  +  +..++ ..+ 
T Consensus       178 ~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~  256 (365)
T 4h5i_A          178 EVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLS-KINFIADDTVLIAASLKKGKGIVLTKISIKSGN  256 (365)
T ss_dssp             CCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEE-EEEEEETTEEEEEEEESSSCCEEEEEEEEETTE
T ss_pred             ceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCEE-EEEEcCCCCEEEEEecCCcceeEEeecccccce
Confidence            46789999999887776677788888  5543322211  12 234 7899999986665322 2  2  34455 333 


Q ss_pred             cEEEee-ecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEE-EeCCcc-CcceE
Q 017371          148 VENFLS-YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VADGFY-FANGV  224 (372)
Q Consensus       148 ~~~l~~-~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~-~~~~~~-~~~gi  224 (372)
                      ...... ...+ ....+..+++.|||++.++-                 ..++.|..+|..+++... +..+.. ....+
T Consensus       257 ~~~~~~~~~~~-~~~~V~~~~~Spdg~~lasg-----------------s~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v  318 (365)
T 4h5i_A          257 TSVLRSKQVTN-RFKGITSMDVDMKGELAVLA-----------------SNDNSIALVKLKDLSMSKIFKQAHSFAITEV  318 (365)
T ss_dssp             EEEEEEEEEES-SCSCEEEEEECTTSCEEEEE-----------------ETTSCEEEEETTTTEEEEEETTSSSSCEEEE
T ss_pred             ecceeeeeecC-CCCCeEeEEECCCCCceEEE-----------------cCCCEEEEEECCCCcEEEEecCcccCCEEEE
Confidence            222111 1111 12346789999999977752                 256789999998887544 334333 34689


Q ss_pred             EEecCCCEEEEEeCCCCeEEEEEccC
Q 017371          225 ALSRDEDYVVVCESWKFRCRKYWLKG  250 (372)
Q Consensus       225 ~~~~dg~~l~v~~~~~~~i~~~~~~g  250 (372)
                      +|+|||+ ++++.+.++.|..+++..
T Consensus       319 ~fSpdg~-~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          319 TISPDST-YVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             EECTTSC-EEEEEETTSEEEEEECCT
T ss_pred             EECCCCC-EEEEEeCCCeEEEEEcCC
Confidence            9999998 555666677888888754

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=98.08  E-value=0.00015  Score=66.92  Aligned_cols=185  Identities=6%  Similarity=-0.113  Sum_probs=101.0

Q ss_pred             CCccEEEcCCC-cEEEEecCCeEEEEe--CCc----eEEEEecCCCcccCeEEcCCCCEEEE-eCCCcEEEEc-CCC-cE
Q 017371           80 HPEDASMDKNG-VIYTATRDGWIKRLQ--DGT----WVNWKFIDSQTLVGLTSTKEGHLIIC-DNANGLHKVS-EDG-VE  149 (372)
Q Consensus        80 ~p~~i~~d~~G-~l~v~~~~g~i~~~~--~g~----~~~~~~~~~~p~~gl~~d~dG~l~v~-~~~~gv~~~~-~~g-~~  149 (372)
                      ...++++.++| .|..+..+|.|..|+  +++    ...+........ .+++.++|+++++ .....+..++ ..+ ..
T Consensus        57 ~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  135 (377)
T 3dwl_C           57 IVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAAT-FVRWSPNEDKFAVGSGARVISVCYFEQENDW  135 (377)
T ss_dssp             CEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEE-EEECCTTSSCCEEEESSSCEEECCC-----C
T ss_pred             eEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceE-EEEECCCCCEEEEEecCCeEEEEEECCcccc
Confidence            45678899887 466667899999998  444    222222233445 8999999875554 4334466666 333 10


Q ss_pred             EEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCC------------------eE
Q 017371          150 NFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN------------------IT  211 (372)
Q Consensus       150 ~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~------------------~~  211 (372)
                      .+.....+.....+..+++.++|++.++-.                 .++.|..+|..++                  +.
T Consensus       136 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-----------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  198 (377)
T 3dwl_C          136 WVSKHLKRPLRSTILSLDWHPNNVLLAAGC-----------------ADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTV  198 (377)
T ss_dssp             CCCEEECSSCCSCEEEEEECTTSSEEEEEE-----------------SSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEE
T ss_pred             eeeeEeecccCCCeEEEEEcCCCCEEEEEe-----------------CCCEEEEEEEEecccCCCccccccccccchhhh
Confidence            011111221123567899999998766532                 3566777765321                  11


Q ss_pred             EEEeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcc--eeeeccCCCCCCceeEEcCCCCEEEEEec
Q 017371          212 TLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGK--LETFAENLPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       212 ~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~--~~~~~~~~~g~p~~i~~d~~G~lwva~~~  284 (372)
                      ............++++|+++.++.+. .++.|..+++...+...  ...+. ...+....+++.++|.+.++...
T Consensus       199 ~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~  271 (377)
T 3dwl_C          199 CAEYPSGGWVHAVGFSPSGNALAYAG-HDSSVTIAYPSAPEQPPRALITVK-LSQLPLRSLLWANESAIVAAGYN  271 (377)
T ss_dssp             EECCCCSSSEEEEEECTTSSCEEEEE-TTTEEC-CEECSTTSCEEECCCEE-CSSSCEEEEEEEETTEEEEEESS
T ss_pred             hhcccCCceEEEEEECCCCCEEEEEe-CCCcEEEEECCCCCCcceeeEeec-CCCCceEEEEEcCCCCEEEEEcC
Confidence            11111122245788999999665554 56678888886543211  11121 12233567888889887766644

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.07  E-value=0.00044  Score=63.90  Aligned_cols=195  Identities=13%  Similarity=0.067  Sum_probs=99.0

Q ss_pred             CccEEEcCCCc-EEEEe-c--CCeEEEEe--CCceEEEEecCCCcccCeEEcCCCC-EEEEeCCCcEEEEc-CCC-cEEE
Q 017371           81 PEDASMDKNGV-IYTAT-R--DGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNANGLHKVS-EDG-VENF  151 (372)
Q Consensus        81 p~~i~~d~~G~-l~v~~-~--~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~-l~v~~~~~gv~~~~-~~g-~~~l  151 (372)
                      +.++++.++|. |++.. .  +..|+.++  +++...+.........++.+.|||+ |+++.....++.++ .++ .+.+
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~  117 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVI  117 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEE
Confidence            55667888885 34443 3  34688888  5555554333333331478899997 44444445688898 555 4443


Q ss_pred             eeecCCccccccc--ceEEccCC---cEEEEeCCCCCCCcccccccc---cccCCCeEEEEeCCCCeEEEEeCCccCcce
Q 017371          152 LSYVNGSKLRFAN--DVVEASDG---SLYFTVSSSKYLPHEYCLDIL---EGKPHGQLLKYDPSSNITTLVADGFYFANG  223 (372)
Q Consensus       152 ~~~~~~~~~~~~~--~l~~d~dG---~i~vtd~~~~~~~~~~~~~~~---~~~~~g~v~~~d~~t~~~~~~~~~~~~~~g  223 (372)
                      .....+   -.+.  .|++....   .+|....  .+..+.....+.   .......|+.+|.++++.+.+.........
T Consensus       118 ~~~~~~---~~~~g~~l~~~~~~~~~~~~~~~~--~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~  192 (396)
T 3c5m_A          118 YTVDEE---WKGYGTWVANSDCTKLVGIEILKR--DWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGH  192 (396)
T ss_dssp             EECCTT---EEEEEEEEECTTSSEEEEEEEEGG--GCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEE
T ss_pred             Eecccc---cCCCCCEEEeccCCcccccccccc--ccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCccccc
Confidence            321111   0000  11111000   0000000  000000000000   113456899999988887776644444567


Q ss_pred             EEEec-CCCEEEEEeCCC-----CeEEEEEccCCCCcceeeeccCCCC-CCceeEEcCCCC-EEEEEe
Q 017371          224 VALSR-DEDYVVVCESWK-----FRCRKYWLKGERKGKLETFAENLPG-APDNINLAPDGT-FWIAII  283 (372)
Q Consensus       224 i~~~~-dg~~l~v~~~~~-----~~i~~~~~~g~~~~~~~~~~~~~~g-~p~~i~~d~~G~-lwva~~  283 (372)
                      +.++| |++.++++....     .+|+.+++++.+.   ..+....++ .+..+++.+||+ |+++..
T Consensus       193 ~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~---~~l~~~~~~~~~~~~~~spdg~~l~~~~~  257 (396)
T 3c5m_A          193 PIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV---RKIKEHAEGESCTHEFWIPDGSAMAYVSY  257 (396)
T ss_dssp             EEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC---EESSCCCTTEEEEEEEECTTSSCEEEEEE
T ss_pred             ceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce---eEeeccCCCccccceEECCCCCEEEEEec
Confidence            88999 787666654332     4799998876432   122211111 244578899996 555443

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=98.06  E-value=0.0031  Score=61.56  Aligned_cols=180  Identities=8%  Similarity=-0.027  Sum_probs=101.0

Q ss_pred             CCCccEEEcCCCcEEEEe-cCCeEE------------------EEe-CCceEE---EE---------ecCCCcccCeEEc
Q 017371           79 NHPEDASMDKNGVIYTAT-RDGWIK------------------RLQ-DGTWVN---WK---------FIDSQTLVGLTST  126 (372)
Q Consensus        79 ~~p~~i~~d~~G~l~v~~-~~g~i~------------------~~~-~g~~~~---~~---------~~~~~p~~gl~~d  126 (372)
                      .+..++++.+||.++++. .|+.|.                  .+. +|....   +.         ....... ++++.
T Consensus        16 ~~v~sv~~SpDG~~iASas~D~TV~d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~-~vawS   94 (588)
T 2j04_A           16 DWKNNLTWARDGTLYLTTFPDISIGQPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPR-VCKPS   94 (588)
T ss_dssp             SSSCCEEECTTSCEEEECSSSEEEEEECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEE-EEEEC
T ss_pred             ccEEEEEECCCCCEEEEEcCCceeecccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEE-EEEEC
Confidence            467899999999888876 566662                  111 221111   10         0112245 89999


Q ss_pred             CCCCEEEE-eCCCcEEEEcCCC-cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEE
Q 017371          127 KEGHLIIC-DNANGLHKVSEDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKY  204 (372)
Q Consensus       127 ~dG~l~v~-~~~~gv~~~~~~g-~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~  204 (372)
                      |||....+ .....+..++.++ ...+. ............+++.|||++.++                 +..+|.|..+
T Consensus        95 PdG~~LAs~s~dg~V~iwd~~~~l~~l~-~~~~~~~~sv~svafSPDG~~LAs-----------------gs~DGtVkIW  156 (588)
T 2j04_A           95 PIDDWMAVLSNNGNVSVFKDNKMLTNLD-SKGNLSSRTYHCFEWNPIESSIVV-----------------GNEDGELQFF  156 (588)
T ss_dssp             SSSSCEEEEETTSCEEEEETTEEEEECC-CSSCSTTTCEEEEEECSSSSCEEE-----------------EETTSEEEEE
T ss_pred             CCCCEEEEEeCCCcEEEEeCCceeeecc-CCCccccccEEEEEEcCCCCEEEE-----------------EcCCCEEEEE
Confidence            99975444 4444466676544 33322 111111235678999999976654                 2257888889


Q ss_pred             eCCCCe--------EEEEeCCc----cCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcc-eeeeccCCCCCCceeE
Q 017371          205 DPSSNI--------TTLVADGF----YFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGK-LETFAENLPGAPDNIN  271 (372)
Q Consensus       205 d~~t~~--------~~~~~~~~----~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~-~~~~~~~~~g~p~~i~  271 (372)
                      |..++.        ...+....    ..-..++|+|||  + ++...++.|..+++++.+... ...+..........++
T Consensus       157 d~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--L-aass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~sva  233 (588)
T 2j04_A          157 SIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--L-VAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLK  233 (588)
T ss_dssp             ECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--E-EEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEE
T ss_pred             ECCCCccccccceeeeeeecccccccccEEEEEEcCCc--E-EEEeCCCeEEEEECCCCccccceeeecccccCcEEEEE
Confidence            988764        23332111    234578999998  4 444456778888887754321 1122111122356677


Q ss_pred             EcCCCCEEEEE
Q 017371          272 LAPDGTFWIAI  282 (372)
Q Consensus       272 ~d~~G~lwva~  282 (372)
                      +.  |+..++.
T Consensus       234 Fs--g~~LASa  242 (588)
T 2j04_A          234 IV--DYKVVLT  242 (588)
T ss_dssp             EE--TTEEEEE
T ss_pred             EE--CCEEEEE
Confidence            76  4544444

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=98.04  E-value=0.0012  Score=62.14  Aligned_cols=157  Identities=11%  Similarity=0.054  Sum_probs=94.2

Q ss_pred             CCCCCCCccEEEcCCCcEEEEecCCeEEEEe-C-C-ceEEEE--------ecCCCcccCeEEcCCC-CEEEEeCC-CcEE
Q 017371           75 EGSVNHPEDASMDKNGVIYTATRDGWIKRLQ-D-G-TWVNWK--------FIDSQTLVGLTSTKEG-HLIICDNA-NGLH  141 (372)
Q Consensus        75 ~g~~~~p~~i~~d~~G~l~v~~~~g~i~~~~-~-g-~~~~~~--------~~~~~p~~gl~~d~dG-~l~v~~~~-~gv~  141 (372)
                      .+.-....++++.++|.++++..+|.|..|+ . + +.....        ....... .+++.++| +++++... ..|.
T Consensus       174 ~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~p~~~~~l~s~~~dg~i~  252 (447)
T 3dw8_B          174 NAHTYHINSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVIT-AAEFHPNSCNTFVYSSSKGTIR  252 (447)
T ss_dssp             SCCSSCCCEEEECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEE-EEEECSSCTTEEEEEETTSCEE
T ss_pred             cCCCcceEEEEEcCCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceE-EEEECCCCCcEEEEEeCCCeEE
Confidence            3444567789999999766655899999998 4 2 211111        1122345 89999998 76665444 4477


Q ss_pred             EEc-CCC-c-----EEEeeecCCc-------ccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCC
Q 017371          142 KVS-EDG-V-----ENFLSYVNGS-------KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS  207 (372)
Q Consensus       142 ~~~-~~g-~-----~~l~~~~~~~-------~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~  207 (372)
                      .++ .++ .     ..+.......       ....+..+++.++|++.++-.                 . +.|..+|..
T Consensus       253 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-----------------~-~~v~iwd~~  314 (447)
T 3dw8_B          253 LCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD-----------------Y-LSVKVWDLN  314 (447)
T ss_dssp             EEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE-----------------S-SEEEEEETT
T ss_pred             EEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee-----------------C-CeEEEEeCC
Confidence            777 554 3     2221110000       001567899999998777522                 3 788888876


Q ss_pred             C-CeEEEEeCCccC----------------cceEEEecCCCEEEEEeCCCCeEEEEEccCC
Q 017371          208 S-NITTLVADGFYF----------------ANGVALSRDEDYVVVCESWKFRCRKYWLKGE  251 (372)
Q Consensus       208 t-~~~~~~~~~~~~----------------~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~  251 (372)
                      + ++..........                ...++|++++++| ++.+.++.|..|++.+.
T Consensus       315 ~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l-~s~s~dg~v~iwd~~~~  374 (447)
T 3dw8_B          315 MENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVV-MTGSYNNFFRMFDRNTK  374 (447)
T ss_dssp             CCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEE-EEECSTTEEEEEETTTC
T ss_pred             CCccccceeeccccccccccccccccccccceEEEECCCCCEE-EEeccCCEEEEEEcCCC
Confidence            4 432221111111                1128999999966 55566778888888654

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=98.03  E-value=0.0016  Score=59.12  Aligned_cols=97  Identities=8%  Similarity=0.049  Sum_probs=57.6

Q ss_pred             CCCCCCCccEEEcCC---C-cEEEEecCCeEEEEe-C--Cce--EEEEecCCCcccCeEEcCCCCEEEEeCC-CcEEEEc
Q 017371           75 EGSVNHPEDASMDKN---G-VIYTATRDGWIKRLQ-D--GTW--VNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS  144 (372)
Q Consensus        75 ~g~~~~p~~i~~d~~---G-~l~v~~~~g~i~~~~-~--g~~--~~~~~~~~~p~~gl~~d~dG~l~v~~~~-~gv~~~~  144 (372)
                      .+.-....++++.++   | .|+++..+|.|..|+ .  +..  ..+....+... .+++.++|+++++... ..+..++
T Consensus        36 ~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~~~dg~v~iwd  114 (368)
T 3mmy_A           36 SSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVL-DVCWSDDGSKVFTASCDKTAKMWD  114 (368)
T ss_dssp             SCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEE-EEEECTTSSEEEEEETTSEEEEEE
T ss_pred             cCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEE-EEEECcCCCEEEEEcCCCcEEEEE
Confidence            343446678999987   4 566677899999998 3  433  23333334455 9999999986655444 4477777


Q ss_pred             -CCC-cEEEeeecCCcccccccceEE--ccCCcEEEE
Q 017371          145 -EDG-VENFLSYVNGSKLRFANDVVE--ASDGSLYFT  177 (372)
Q Consensus       145 -~~g-~~~l~~~~~~~~~~~~~~l~~--d~dG~i~vt  177 (372)
                       .++ ...+.. ..    ..+..+++  .++|+++++
T Consensus       115 ~~~~~~~~~~~-~~----~~v~~~~~~~~~~~~~l~~  146 (368)
T 3mmy_A          115 LSSNQAIQIAQ-HD----APVKTIHWIKAPNYSCVMT  146 (368)
T ss_dssp             TTTTEEEEEEE-CS----SCEEEEEEEECSSCEEEEE
T ss_pred             cCCCCceeecc-cc----CceEEEEEEeCCCCCEEEE
Confidence             555 322211 11    23445666  566654443

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=98.03  E-value=0.0014  Score=59.48  Aligned_cols=174  Identities=9%  Similarity=0.027  Sum_probs=98.1

Q ss_pred             CCccEEEcCCCc-EEEEe-cC--C--eEEEEe--CCceEEEEecCCCcccCeEEcCCCC-EEEEeC--------------
Q 017371           80 HPEDASMDKNGV-IYTAT-RD--G--WIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDN--------------  136 (372)
Q Consensus        80 ~p~~i~~d~~G~-l~v~~-~~--g--~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~-l~v~~~--------------  136 (372)
                      ...++++.|+|. |++.. ..  +  .|+.++  +|+.+.+..... .. ++++.|||+ |+++..              
T Consensus        60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~-~~~wspdg~~l~~~~~~~~~~~~~~~~~~~  137 (347)
T 2gop_A           60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IR-SLEWNEDSRKLLIVGFKRREDEDFIFEDDV  137 (347)
T ss_dssp             SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EE-EEEECTTSSEEEEEEECCCC---------C
T ss_pred             cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-cc-ceeECCCCCEEEEEEccCCCcCCcEEEccc
Confidence            455688999994 55554 22  3  488888  556555544333 55 889999996 555431              


Q ss_pred             -------------CCcEEEEc-CCC-c-EEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCe
Q 017371          137 -------------ANGLHKVS-EDG-V-ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQ  200 (372)
Q Consensus       137 -------------~~gv~~~~-~~g-~-~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~  200 (372)
                                   ...|+.++ .+| . +.+..  +     ....+++.+|| ++++.....   .     .....+...
T Consensus       138 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~--~-----~~~~~~~spdg-~~~~~~~~~---~-----~~~~~~~~~  201 (347)
T 2gop_A          138 PAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK--P-----RFSSGIWHRDK-IVVNVPHRE---I-----IPQYFKFWD  201 (347)
T ss_dssp             CCC---------CEEEEEEEETTTTEEEEEEEE--E-----TTCEEEEETTE-EEEEEECCC---S-----SCCSSCCEE
T ss_pred             ceeecCcccccCccceEEEEECCCCeEEeeecC--C-----CcccccCCCCe-EEEEEeccc---c-----ccccccccc
Confidence                         13477777 555 4 44432  1     35578889999 766532100   0     000001457


Q ss_pred             EEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCC-------CCeEEEEEccCCCCcceeeeccCCCCCCce-eEE
Q 017371          201 LLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW-------KFRCRKYWLKGERKGKLETFAENLPGAPDN-INL  272 (372)
Q Consensus       201 v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~-------~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~-i~~  272 (372)
                      |+.+|  +++.+.+...  .. -..++|||+.+++....       ..+|+.++ .+    +.............+ +..
T Consensus       202 l~~~d--~~~~~~l~~~--~~-~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d-~~----~~~~l~~~~~~~~~~~~~~  271 (347)
T 2gop_A          202 IYIWE--DGKEEKMFEK--VS-FYAVDSDGERILLYGKPEKKYMSEHNKLYIYD-GK----EVMGILDEVDRGVGQAKIK  271 (347)
T ss_dssp             EEEEE--TTEEEEEEEE--ES-EEEEEECSSCEEEEECCSSSCCCSSCEEEEEC-SS----CEEESSTTCCSEEEEEEEE
T ss_pred             EEEeC--CCceEEeccC--cc-eeeECCCCCEEEEEEccccCCccccceEEEEC-CC----ceEeccccCCcccCCccEE
Confidence            99999  5777666544  21 22349999988776533       34788877 32    222222222222333 667


Q ss_pred             cCCCCEEEEEe
Q 017371          273 APDGTFWIAII  283 (372)
Q Consensus       273 d~~G~lwva~~  283 (372)
                      + +| +++...
T Consensus       272 s-dg-~~~~~~  280 (347)
T 2gop_A          272 D-GK-VYFTLF  280 (347)
T ss_dssp             T-TE-EEEEEE
T ss_pred             c-Cc-EEEEEe
Confidence            7 88 666544

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=98.03  E-value=0.0006  Score=62.44  Aligned_cols=147  Identities=10%  Similarity=0.042  Sum_probs=82.6

Q ss_pred             CcccCeEEcCCCCEEEEeCC-CcEEEEc-CCC-cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCccccccccc
Q 017371          118 QTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILE  194 (372)
Q Consensus       118 ~p~~gl~~d~dG~l~v~~~~-~gv~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~  194 (372)
                      ... .+++.|+|+++++... ..|..++ .++ .........+ ....+..+++.++|+..++-+               
T Consensus        18 ~v~-~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~-h~~~v~~~~~sp~g~~l~s~s---------------   80 (345)
T 3fm0_A           18 RCW-FLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEG-HQRTVRKVAWSPCGNYLASAS---------------   80 (345)
T ss_dssp             CEE-EEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSS-CSSCEEEEEECTTSSEEEEEE---------------
T ss_pred             cEE-EEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccc-cCCcEEEEEECCCCCEEEEEE---------------
Confidence            445 8999999987666444 4466666 444 2111111111 123567899999998777532               


Q ss_pred             ccCCCeEEEEeCCCCeEEE--EeCC-ccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeE
Q 017371          195 GKPHGQLLKYDPSSNITTL--VADG-FYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNIN  271 (372)
Q Consensus       195 ~~~~g~v~~~d~~t~~~~~--~~~~-~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~  271 (372)
                        .++.+..+|..+++.+.  ...+ -.....++|+|+++.|+.+. .+..|..+++.....................++
T Consensus        81 --~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s-~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~  157 (345)
T 3fm0_A           81 --FDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCS-RDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVV  157 (345)
T ss_dssp             --TTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEEECTTSCEEEEEEECCCCSCEEEEE
T ss_pred             --CCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEE-CCCeEEEEECCCCCCeEEEEEecCcCCCeEEEE
Confidence              34556666655444332  2232 23346789999999655544 566788888764322221111112223345678


Q ss_pred             EcCCCCEEEEEec
Q 017371          272 LAPDGTFWIAIIK  284 (372)
Q Consensus       272 ~d~~G~lwva~~~  284 (372)
                      +.++|++.++...
T Consensus       158 ~~p~~~~l~s~s~  170 (345)
T 3fm0_A          158 WHPSQELLASASY  170 (345)
T ss_dssp             ECSSSSCEEEEET
T ss_pred             ECCCCCEEEEEeC
Confidence            8888876655543

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.02  E-value=0.00069  Score=61.95  Aligned_cols=176  Identities=10%  Similarity=0.124  Sum_probs=96.9

Q ss_pred             CCCcEEEEe-cCCeEEEEe-CCceEEEEecCCCcccCeEEcCC----C----CEEEEeCC---CcE--EEEc-CCC-cEE
Q 017371           88 KNGVIYTAT-RDGWIKRLQ-DGTWVNWKFIDSQTLVGLTSTKE----G----HLIICDNA---NGL--HKVS-EDG-VEN  150 (372)
Q Consensus        88 ~~G~l~v~~-~~g~i~~~~-~g~~~~~~~~~~~p~~gl~~d~d----G----~l~v~~~~---~gv--~~~~-~~g-~~~  150 (372)
                      +...+++++ ..+.|+.|+ +|+...... .++++ ++.+.++    |    .+++++..   +.|  +.++ .++ +..
T Consensus        38 p~~s~ii~t~k~~gL~Vydl~G~~l~~~~-~g~~n-nVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~  115 (355)
T 3amr_A           38 PQNSKLITTNKKSGLVVYSLDGKMLHSYN-TGKLN-NVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS  115 (355)
T ss_dssp             GGGCEEEEEETTTEEEEEETTSCEEEEEC-CSCEE-EEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred             CCccEEEEEcCCCCEEEEcCCCcEEEEcc-CCCcc-cEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence            344667766 667899999 777655443 25666 6555441    2    24555543   334  4456 344 444


Q ss_pred             Eeee-cC-CcccccccceEE--ccC-Cc--EEEEeCCCCCCCcccccccccccCCCeEEEEeC---CCCeEE----EEeC
Q 017371          151 FLSY-VN-GSKLRFANDVVE--ASD-GS--LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDP---SSNITT----LVAD  216 (372)
Q Consensus       151 l~~~-~~-~~~~~~~~~l~~--d~d-G~--i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~---~t~~~~----~~~~  216 (372)
                      +... .+ +..+..|.+++.  ++. |+  +|+++                  .+|++..|+.   ..++++    .-+.
T Consensus       116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~------------------k~G~~~q~~l~~~~~g~~~~~lVR~f~  177 (355)
T 3amr_A          116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTG------------------KEGEFEQYELKADKNGYISGKKVRAFK  177 (355)
T ss_dssp             CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEEC------------------SSSEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred             ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEEC------------------CCCeEEEEEEEeCCCCcccceEEEEec
Confidence            4221 01 122367889998  764 55  55543                  3355555432   223221    1122


Q ss_pred             CccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCC--Ccce-eeec-cCCCCCCceeEEc--CCC--CEEEEEec
Q 017371          217 GFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGER--KGKL-ETFA-ENLPGAPDNINLA--PDG--TFWIAIIK  284 (372)
Q Consensus       217 ~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~--~~~~-~~~~-~~~~g~p~~i~~d--~~G--~lwva~~~  284 (372)
                      .-..+.|++++++..+||+++.. ..||+|+.+...  .... ..+. ..+..-+.||++.  ++|  .|++++.+
T Consensus       178 lgsq~EgcvvDd~~g~Lyv~eEd-~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG  252 (355)
T 3amr_A          178 MNSQTEGMAADDEYGRLYIAEED-EAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQG  252 (355)
T ss_dssp             CSSCEEEEEEETTTTEEEEEETT-TEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGG
T ss_pred             CCCCcceEEEcCCCCeEEEeccc-ceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCC
Confidence            23467899999988899999976 569999965322  1111 1111 1222347889884  444  46666655

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=98.02  E-value=0.0071  Score=54.23  Aligned_cols=185  Identities=14%  Similarity=0.125  Sum_probs=101.1

Q ss_pred             CCCCCCCccEEEcCC-Cc-EEEEecCCeEEEEe--CCce------EEEEecCCCcccCeEEcCCCCEEEEeCCCc-EEEE
Q 017371           75 EGSVNHPEDASMDKN-GV-IYTATRDGWIKRLQ--DGTW------VNWKFIDSQTLVGLTSTKEGHLIICDNANG-LHKV  143 (372)
Q Consensus        75 ~g~~~~p~~i~~d~~-G~-l~v~~~~g~i~~~~--~g~~------~~~~~~~~~p~~gl~~d~dG~l~v~~~~~g-v~~~  143 (372)
                      .|--....+|++.|+ +. |..+..||.|..|+  .++.      ..+..-..... .+++.++|++.++....+ +..+
T Consensus        35 ~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~-~~~~s~dg~~l~s~~~d~~i~~~  113 (340)
T 4aow_A           35 KGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVS-DVVISSDGQFALSGSWDGTLRLW  113 (340)
T ss_dssp             CCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEE-EEEECTTSSEEEEEETTSEEEEE
T ss_pred             CCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEE-EEEECCCCCEEEEEcccccceEE
Confidence            354456778999976 55 45566899999888  3221      11111123345 899999998766654444 5555


Q ss_pred             c-CCC-cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCC--cc
Q 017371          144 S-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG--FY  219 (372)
Q Consensus       144 ~-~~g-~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~--~~  219 (372)
                      + ..+ .........    .......+.+++...++-                 ..++.+..+|............  ..
T Consensus       114 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~s~-----------------s~d~~~~~~d~~~~~~~~~~~~~~~~  172 (340)
T 4aow_A          114 DLTTGTTTRRFVGHT----KDVLSVAFSSDNRQIVSG-----------------SRDKTIKLWNTLGVCKYTVQDESHSE  172 (340)
T ss_dssp             ETTTTEEEEEEECCS----SCEEEEEECTTSSCEEEE-----------------ETTSCEEEECTTSCEEEEECSSSCSS
T ss_pred             eecccceeeeecCCC----CceeEEEEeecCccceee-----------------cCCCeEEEEEeCCCceEEEEeccccC
Confidence            5 333 221111111    123345566677655542                 2456677777654433322211  12


Q ss_pred             CcceEEEecCCC-EEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 017371          220 FANGVALSRDED-YVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       220 ~~~gi~~~~dg~-~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~  284 (372)
                      ....+++++++. .++++...+..|..+++...+  ....+. ...+....++++++|++.++...
T Consensus       173 ~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~--~~~~~~-~h~~~v~~~~~s~~~~~l~s~s~  235 (340)
T 4aow_A          173 WVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK--LKTNHI-GHTGYLNTVTVSPDGSLCASGGK  235 (340)
T ss_dssp             CEEEEEECSCSSSCEEEEEETTSCEEEEETTTTE--EEEEEC-CCSSCEEEEEECTTSSEEEEEET
T ss_pred             cccceEEccCCCCcEEEEEcCCCEEEEEECCCCc--eeeEec-CCCCcEEEEEECCCCCEEEEEeC
Confidence            234566776653 244555556667777775432  112222 22334567889999988776654

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=98.02  E-value=0.00061  Score=64.43  Aligned_cols=183  Identities=9%  Similarity=-0.043  Sum_probs=112.6

Q ss_pred             CCCccEEEcCCCc--EEEEecCCeEEEEe-CC--c-------eEEEEecCCCcccCeEEcC-CCCEEEEeCC-CcEEEEc
Q 017371           79 NHPEDASMDKNGV--IYTATRDGWIKRLQ-DG--T-------WVNWKFIDSQTLVGLTSTK-EGHLIICDNA-NGLHKVS  144 (372)
Q Consensus        79 ~~p~~i~~d~~G~--l~v~~~~g~i~~~~-~g--~-------~~~~~~~~~~p~~gl~~d~-dG~l~v~~~~-~gv~~~~  144 (372)
                      ....++++.+++.  |.++..+|.|..|+ ..  .       ...+........ .+++.+ ++.++++... ..|..++
T Consensus       182 ~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~-~v~~~p~~~~~l~s~~~dg~i~i~d  260 (430)
T 2xyi_A          182 KEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVE-DVAWHLLHESLFGSVADDQKLMIWD  260 (430)
T ss_dssp             SCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEE-EEEECSSCTTEEEEEETTSEEEEEE
T ss_pred             CCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEe-eeEEeCCCCCEEEEEeCCCeEEEEE
Confidence            3567899998775  56666899999999 32  1       122222233455 899998 5677766544 4477777


Q ss_pred             -CCC-----cEEEeeecCCcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCC-Ce-EEEEe
Q 017371          145 -EDG-----VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS-NI-TTLVA  215 (372)
Q Consensus       145 -~~g-----~~~l~~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t-~~-~~~~~  215 (372)
                       .++     ...+. . .   ...++.+++.++|. ++++-                 ..++.|..+|..+ ++ +..+.
T Consensus       261 ~~~~~~~~~~~~~~-~-~---~~~v~~i~~~p~~~~~l~tg-----------------~~dg~v~vwd~~~~~~~~~~~~  318 (430)
T 2xyi_A          261 TRNNNTSKPSHTVD-A-H---TAEVNCLSFNPYSEFILATG-----------------SADKTVALWDLRNLKLKLHSFE  318 (430)
T ss_dssp             TTCSCSSSCSEEEE-C-C---SSCEEEEEECSSCTTEEEEE-----------------ETTSEEEEEETTCTTSCSEEEE
T ss_pred             CCCCCCCcceeEee-c-C---CCCeEEEEeCCCCCCEEEEE-----------------eCCCeEEEEeCCCCCCCeEEee
Confidence             432     22221 1 1   13567899999885 66652                 2467888888765 22 33333


Q ss_pred             CCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcc----------eeeec-cCCCCCCceeEEcCCCC-EEEEEe
Q 017371          216 DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGK----------LETFA-ENLPGAPDNINLAPDGT-FWIAII  283 (372)
Q Consensus       216 ~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~----------~~~~~-~~~~g~p~~i~~d~~G~-lwva~~  283 (372)
                      ........++++|+++.++++...++.|..|++.......          ...+. ......+..+++.++|. +.++..
T Consensus       319 ~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s  398 (430)
T 2xyi_A          319 SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVS  398 (430)
T ss_dssp             CCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEE
T ss_pred             cCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEE
Confidence            3334456789999998788887778889999886421100          11111 11233477899999998 666665


Q ss_pred             c
Q 017371          284 K  284 (372)
Q Consensus       284 ~  284 (372)
                      .
T Consensus       399 ~  399 (430)
T 2xyi_A          399 E  399 (430)
T ss_dssp             T
T ss_pred             C
Confidence            4

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=98.01  E-value=0.0065  Score=55.26  Aligned_cols=181  Identities=12%  Similarity=0.087  Sum_probs=102.8

Q ss_pred             CCCCCCccEEE-----cC-CCc-EEEEecCCeEEEEe-C-Cc-------e-EEEEecCCCcccCeEEcCCCCEEEEeCC-
Q 017371           76 GSVNHPEDASM-----DK-NGV-IYTATRDGWIKRLQ-D-GT-------W-VNWKFIDSQTLVGLTSTKEGHLIICDNA-  137 (372)
Q Consensus        76 g~~~~p~~i~~-----d~-~G~-l~v~~~~g~i~~~~-~-g~-------~-~~~~~~~~~p~~gl~~d~dG~l~v~~~~-  137 (372)
                      |.-....++++     .+ +|. |..+..|+.|..|+ . ++       . ..+........ .+++.++|.+.++... 
T Consensus        19 gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~-~~~~~~~~~~l~s~s~D   97 (343)
T 2xzm_R           19 GHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVS-DLALSQENCFAISSSWD   97 (343)
T ss_dssp             CCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEE-EEEECSSTTEEEEEETT
T ss_pred             cchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceE-EEEECCCCCEEEEEcCC
Confidence            33334566777     44 664 55666899999888 2 21       1 11111122344 8999999987766544 


Q ss_pred             CcEEEEc-CCC--cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEE
Q 017371          138 NGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV  214 (372)
Q Consensus       138 ~gv~~~~-~~g--~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~  214 (372)
                      ..+..++ .++  ...+...     ...+..+++.++|+..++-+                 .++.|..+|.........
T Consensus        98 ~~v~lwd~~~~~~~~~~~~h-----~~~v~~v~~sp~~~~l~s~~-----------------~d~~i~~wd~~~~~~~~~  155 (343)
T 2xzm_R           98 KTLRLWDLRTGTTYKRFVGH-----QSEVYSVAFSPDNRQILSAG-----------------AEREIKLWNILGECKFSS  155 (343)
T ss_dssp             SEEEEEETTSSCEEEEEECC-----CSCEEEEEECSSTTEEEEEE-----------------TTSCEEEEESSSCEEEEC
T ss_pred             CcEEEEECCCCcEEEEEcCC-----CCcEEEEEECCCCCEEEEEc-----------------CCCEEEEEeccCCceeee
Confidence            4466777 566  3333211     12467899999998766532                 456788888763332222


Q ss_pred             eC---CccCcceEEEecCC----------CEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEE
Q 017371          215 AD---GFYFANGVALSRDE----------DYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIA  281 (372)
Q Consensus       215 ~~---~~~~~~gi~~~~dg----------~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva  281 (372)
                      ..   .......++++|++          . ++++...++.|..++..+   .....+. ...+....+++.++|++.++
T Consensus       156 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~---~~~~~~~-~h~~~v~~~~~s~~g~~l~s  230 (343)
T 2xzm_R          156 AEKENHSDWVSCVRYSPIMKSANKVQPFAP-YFASVGWDGRLKVWNTNF---QIRYTFK-AHESNVNHLSISPNGKYIAT  230 (343)
T ss_dssp             CTTTSCSSCEEEEEECCCCCSCSCCCSSCC-EEEEEETTSEEEEEETTT---EEEEEEE-CCSSCEEEEEECTTSSEEEE
T ss_pred             ecccCCCceeeeeeeccccccccccCCCCC-EEEEEcCCCEEEEEcCCC---ceeEEEc-CccccceEEEECCCCCEEEE
Confidence            21   11123457788776          4 444555566777777432   1112222 22334567889999987766


Q ss_pred             Eec
Q 017371          282 IIK  284 (372)
Q Consensus       282 ~~~  284 (372)
                      ...
T Consensus       231 gs~  233 (343)
T 2xzm_R          231 GGK  233 (343)
T ss_dssp             EET
T ss_pred             EcC
Confidence            554

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=98.01  E-value=0.00085  Score=69.98  Aligned_cols=180  Identities=14%  Similarity=0.104  Sum_probs=110.2

Q ss_pred             CCCCccEEEcCCCc-EEEEecCCeEEEEe-CCceEEEEecCCCcccCeEEcCCCC-EEEEeCCCcEEEEc-CCC--cEEE
Q 017371           78 VNHPEDASMDKNGV-IYTATRDGWIKRLQ-DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNANGLHKVS-EDG--VENF  151 (372)
Q Consensus        78 ~~~p~~i~~d~~G~-l~v~~~~g~i~~~~-~g~~~~~~~~~~~p~~gl~~d~dG~-l~v~~~~~gv~~~~-~~g--~~~l  151 (372)
                      -....+++++++|. |.+|+.+|.|..|+ .+...........+...+++.+ |+ |..+..+..+..++ .++  ...+
T Consensus        17 ~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~   95 (902)
T 2oaj_A           17 SSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTV   95 (902)
T ss_dssp             SSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEE
T ss_pred             CCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEE
Confidence            34678899999996 45566899999998 3322222222223333899998 87 55555556677888 556  3333


Q ss_pred             eeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEe-----------C-Ccc
Q 017371          152 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-----------D-GFY  219 (372)
Q Consensus       152 ~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~-----------~-~~~  219 (372)
                      .  ..    ..+..++++++|+..++                 +..+|.|..+|.++++...+.           . ...
T Consensus        96 ~--~~----~~V~~v~~sp~g~~l~s-----------------gs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~  152 (902)
T 2oaj_A           96 F--VP----GKITSIDTDASLDWMLI-----------------GLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLS  152 (902)
T ss_dssp             E--CS----SCEEEEECCTTCSEEEE-----------------EETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCC
T ss_pred             c--CC----CCEEEEEECCCCCEEEE-----------------EcCCCcEEEEECCCCccccceeccccccccccccCCC
Confidence            2  11    24678899999976654                 225678999998877653211           0 112


Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccC-----------------CCCCCceeEEcCCCCEEEEE
Q 017371          220 FANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAEN-----------------LPGAPDNINLAPDGTFWIAI  282 (372)
Q Consensus       220 ~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~-----------------~~g~p~~i~~d~~G~lwva~  282 (372)
                      ....++|+|++..++++...++.| .+++...+.  ...+...                 ..+....+++.++|++.++.
T Consensus       153 ~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasg  229 (902)
T 2oaj_A          153 PIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEI--KQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITI  229 (902)
T ss_dssp             CCCEEEEETTEEEEEEEECSSCEE-EEETTTTEE--EEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEE
T ss_pred             CeEEEEEccCCCCEEEEEeCCCcE-EEECCCCce--EEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEE
Confidence            346799999754455566667777 888764321  1122111                 01234568889999877776


Q ss_pred             ec
Q 017371          283 IK  284 (372)
Q Consensus       283 ~~  284 (372)
                      ..
T Consensus       230 s~  231 (902)
T 2oaj_A          230 HE  231 (902)
T ss_dssp             ET
T ss_pred             EC
Confidence            65

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=98.00  E-value=0.00012  Score=70.25  Aligned_cols=165  Identities=14%  Similarity=0.112  Sum_probs=93.8

Q ss_pred             ceEEEEecCCCcccCeEEcCCCC--EEEEeCCCcEEEEcCCC-c--EEEee---ec-CC---cccccccceEEccC----
Q 017371          108 TWVNWKFIDSQTLVGLTSTKEGH--LIICDNANGLHKVSEDG-V--ENFLS---YV-NG---SKLRFANDVVEASD----  171 (372)
Q Consensus       108 ~~~~~~~~~~~p~~gl~~d~dG~--l~v~~~~~gv~~~~~~g-~--~~l~~---~~-~~---~~~~~~~~l~~d~d----  171 (372)
                      +++.++.....|. +|++.+||+  |||++....|+.++.+| .  +.+..   .. .+   .....+-+|+++++    
T Consensus         5 ~v~~va~gL~~P~-~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n   83 (463)
T 2wg3_C            5 CIQEVVSGLRQPV-GALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKN   83 (463)
T ss_dssp             EEEEEEEEESSEE-EEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHH
T ss_pred             EEEEeccCCCCce-EEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCC
Confidence            3556667778999 999999985  99998765577777544 2  11111   01 11   01234568999985    


Q ss_pred             CcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCC--------CeEEEEeC-----CccCcceEEEecCCCEEEEEeC
Q 017371          172 GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS--------NITTLVAD-----GFYFANGVALSRDEDYVVVCES  238 (372)
Q Consensus       172 G~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t--------~~~~~~~~-----~~~~~~gi~~~~dg~~l~v~~~  238 (372)
                      |.||++.+...-+...     -......+|.|+....        .+.+++.+     ..++...++|+|||. |||+.-
T Consensus        84 ~~lYv~yt~~~~~~~~-----~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~-LYv~~G  157 (463)
T 2wg3_C           84 GKLYVSYTTNQERWAI-----GPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGF-LYIILG  157 (463)
T ss_dssp             CEEEEEEEECCCSSCS-----SSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSC-EEEEEC
T ss_pred             CEEEEEEeCCCCCccc-----CCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCc-EEEEeC
Confidence            8999975320000000     0000013676665421        12233322     234445799999996 999742


Q ss_pred             C-----------------CCeEEEEEccCCC------Cc-----------ceeeeccCCCCCCceeEEcCC-----CCEE
Q 017371          239 W-----------------KFRCRKYWLKGER------KG-----------KLETFAENLPGAPDNINLAPD-----GTFW  279 (372)
Q Consensus       239 ~-----------------~~~i~~~~~~g~~------~~-----------~~~~~~~~~~g~p~~i~~d~~-----G~lw  279 (372)
                      .                 ...|+|+++++..      ..           ..+++...+ ..|-++++|++     |+||
T Consensus       158 d~~~~~~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~-RNp~gla~dp~tg~~~G~l~  236 (463)
T 2wg3_C          158 DGMITLDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGL-HDPGRCAVDRHPTDININLT  236 (463)
T ss_dssp             CTTCCHHHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECC-SSCCBEEEESSCSSTTCSEE
T ss_pred             CCCCCCCccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECC-CCcceEEECCCCCCcccceE
Confidence            1                 3469999998731      10           124444322 24889999997     6555


Q ss_pred             E
Q 017371          280 I  280 (372)
Q Consensus       280 v  280 (372)
                      +
T Consensus       237 ~  237 (463)
T 2wg3_C          237 I  237 (463)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=98.00  E-value=0.0036  Score=56.71  Aligned_cols=173  Identities=10%  Similarity=0.050  Sum_probs=93.6

Q ss_pred             CCccEEEcCCCcEEEEecCCeEEEEe--CCceEEE--E-ec-CC-CcccCeEEcCCCCEEEEeCC-CcEEEEc-CCC---
Q 017371           80 HPEDASMDKNGVIYTATRDGWIKRLQ--DGTWVNW--K-FI-DS-QTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG---  147 (372)
Q Consensus        80 ~p~~i~~d~~G~l~v~~~~g~i~~~~--~g~~~~~--~-~~-~~-~p~~gl~~d~dG~l~v~~~~-~gv~~~~-~~g---  147 (372)
                      ...+++++++ .|..+..+|.|..++  .+..+..  . .. .. ... .+++.|+|+++++... ..+..++ ..+   
T Consensus        16 ~v~~~~~s~~-~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~-~v~~sp~~~~las~s~D~~v~iw~~~~~~~~   93 (330)
T 2hes_X           16 KIWSFDFSQG-ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIR-SVAWRPHTSLLAAGSFDSTVSIWAKEESADR   93 (330)
T ss_dssp             CEEEEEEETT-EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEE-EEEECTTSSEEEEEETTSCEEEEEC------
T ss_pred             ceeeeccCCC-EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEE-EEEECCCCCEEEEEeCCCcEEEEEcccCcCc
Confidence            4456777776 677777899999998  3332222  1 11 22 345 8999999987666544 4466666 211   


Q ss_pred             ---cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCC-C---eEEEEeCC-cc
Q 017371          148 ---VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS-N---ITTLVADG-FY  219 (372)
Q Consensus       148 ---~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t-~---~~~~~~~~-~~  219 (372)
                         .+.+ ....+. ...+..+++.++|+..++-+                 .++.|..+|... +   +......+ -.
T Consensus        94 ~~~~~~~-~~~~~h-~~~V~~v~~sp~g~~las~s-----------------~D~~v~iwd~~~~~~~~~~~~~~~~h~~  154 (330)
T 2hes_X           94 TFEMDLL-AIIEGH-ENEVKGVAWSNDGYYLATCS-----------------RDKSVWIWETDESGEEYECISVLQEHSQ  154 (330)
T ss_dssp             -CCCEEE-EEEC-----CEEEEEECTTSCEEEEEE-----------------TTSCEEEEECCTTCCCCEEEEEECCCSS
T ss_pred             cccceeE-EEEcCC-CCcEEEEEECCCCCEEEEEe-----------------CCCEEEEEeccCCCCCeEEEEEeccCCC
Confidence               1111 111221 13567899999998777532                 466788887632 2   22222222 23


Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCC
Q 017371          220 FANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPD  275 (372)
Q Consensus       220 ~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~  275 (372)
                      ..+.++++|+++.|.. .+.+..|..++...........+. ...+....+.++++
T Consensus       155 ~v~~v~~~p~~~~l~s-~s~D~~i~iW~~~~~~~~~~~~~~-~h~~~v~~~~~~~~  208 (330)
T 2hes_X          155 DVKHVIWHPSEALLAS-SSYDDTVRIWKDYDDDWECVAVLN-GHEGTVWSSDFDKT  208 (330)
T ss_dssp             CEEEEEECSSSSEEEE-EETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCS
T ss_pred             ceEEEEECCCCCEEEE-EcCCCeEEEEECCCCCeeEEEEcc-CCCCcEEEEEecCC
Confidence            3467899999985544 444556766665432111111221 22233445667776

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=97.99  E-value=0.0026  Score=59.00  Aligned_cols=178  Identities=15%  Similarity=0.083  Sum_probs=107.7

Q ss_pred             cEEEcCC--CcEEEEecCCeEEEEe--CCce-EEEEe-----cCCCcccCeEEcC-CCCEEEEeCC-CcEEEEc-C-CC-
Q 017371           83 DASMDKN--GVIYTATRDGWIKRLQ--DGTW-VNWKF-----IDSQTLVGLTSTK-EGHLIICDNA-NGLHKVS-E-DG-  147 (372)
Q Consensus        83 ~i~~d~~--G~l~v~~~~g~i~~~~--~g~~-~~~~~-----~~~~p~~gl~~d~-dG~l~v~~~~-~gv~~~~-~-~g-  147 (372)
                      ++.+.++  ..|+.++.++.|..||  .++. ..+..     ...... .+.+.+ +++++++... ..+..+| . .+ 
T Consensus       162 ~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~  240 (380)
T 3iz6_a          162 SCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVL-SLSINSLNANMFISGSCDTTVRLWDLRITSR  240 (380)
T ss_dssp             CCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEE-EEEECSSSCCEEEEEETTSCEEEEETTTTCC
T ss_pred             EEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeE-EEEeecCCCCEEEEEECCCeEEEEECCCCCc
Confidence            3444443  3588888999999999  4543 23311     112234 677765 6777766544 4467777 4 33 


Q ss_pred             -cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCc--------
Q 017371          148 -VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF--------  218 (372)
Q Consensus       148 -~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~--------  218 (372)
                       ...+.    +. ...++.+++.++|+.+++-+                 .++.|..+|..+++........        
T Consensus       241 ~~~~~~----~h-~~~v~~v~~~p~~~~l~s~s-----------------~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~  298 (380)
T 3iz6_a          241 AVRTYH----GH-EGDINSVKFFPDGQRFGTGS-----------------DDGTCRLFDMRTGHQLQVYNREPDRNDNEL  298 (380)
T ss_dssp             CCEEEC----CC-SSCCCEEEECTTSSEEEEEC-----------------SSSCEEEEETTTTEEEEEECCCCSSSCCSS
T ss_pred             ceEEEC----Cc-CCCeEEEEEecCCCeEEEEc-----------------CCCeEEEEECCCCcEEEEeccccccccccc
Confidence             33331    11 13577899999998877633                 5678899998877655443221        


Q ss_pred             cCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcc-eeeeccCCCCCCceeEEcCCCCEEEEEec
Q 017371          219 YFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGK-LETFAENLPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       219 ~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~-~~~~~~~~~g~p~~i~~d~~G~lwva~~~  284 (372)
                      .....++|+++|+.++. ...++.|..++....+... .........+....+++.++|.+.++...
T Consensus       299 ~~v~~~~~s~~g~~l~~-g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~  364 (380)
T 3iz6_a          299 PIVTSVAFSISGRLLFA-GYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSW  364 (380)
T ss_dssp             CSCSEEEECSSSSEEEE-ECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECT
T ss_pred             CceEEEEECCCCCEEEE-EECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeC
Confidence            12467899999995555 4556778888875432111 11111123345677899999987766554

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=97.98  E-value=0.0014  Score=59.90  Aligned_cols=181  Identities=13%  Similarity=0.163  Sum_probs=100.9

Q ss_pred             CCccEEEcCC--C-cEEEEecCCeEEEEe--CCceEEE---EecCCCcccCeEEcCC--CCEEEEeCC-CcEEEEc-CCC
Q 017371           80 HPEDASMDKN--G-VIYTATRDGWIKRLQ--DGTWVNW---KFIDSQTLVGLTSTKE--GHLIICDNA-NGLHKVS-EDG  147 (372)
Q Consensus        80 ~p~~i~~d~~--G-~l~v~~~~g~i~~~~--~g~~~~~---~~~~~~p~~gl~~d~d--G~l~v~~~~-~gv~~~~-~~g  147 (372)
                      ...++++.++  | .|+.++.+|.|..|+  +++....   ........ .+++.++  |+++++... ..+..++ .++
T Consensus        57 ~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~  135 (379)
T 3jrp_A           57 PVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVN-SVQWAPHEYGPLLLVASSDGKVSVVEFKEN  135 (379)
T ss_dssp             CEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEE-EEEECCGGGCSEEEEEETTSEEEEEECCTT
T ss_pred             cEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceE-EEEeCCCCCCCEEEEecCCCcEEEEecCCC
Confidence            4567888654  5 566667899999998  5653222   22223445 8999988  776555444 4466777 433


Q ss_pred             --cEEEeeecCCcccccccceEEcc-------------CCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCe--
Q 017371          148 --VENFLSYVNGSKLRFANDVVEAS-------------DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI--  210 (372)
Q Consensus       148 --~~~l~~~~~~~~~~~~~~l~~d~-------------dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~--  210 (372)
                        .........   ...+..+++.+             ++.+.++-.                 .++.|..+|..+++  
T Consensus       136 ~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------------~dg~i~i~d~~~~~~~  195 (379)
T 3jrp_A          136 GTTSPIIIDAH---AIGVNSASWAPATIEEDGEHNGTKESRKFVTGG-----------------ADNLVKIWKYNSDAQT  195 (379)
T ss_dssp             SCCCEEEEECC---TTCEEEEEECCCC----------CTTCEEEEEE-----------------TTSCEEEEEEETTTTE
T ss_pred             CceeeEEecCC---CCceEEEEEcCccccccccccCCCCCCEEEEEe-----------------CCCeEEEEEecCCCcc
Confidence              222211111   12456778887             576665422                 45667777764432  


Q ss_pred             EEE--EeCC-ccCcceEEEecC---CCEEEEEeCCCCeEEEEEccCCCCcceeeeccC--CCCCCceeEEcCCCCEEEEE
Q 017371          211 TTL--VADG-FYFANGVALSRD---EDYVVVCESWKFRCRKYWLKGERKGKLETFAEN--LPGAPDNINLAPDGTFWIAI  282 (372)
Q Consensus       211 ~~~--~~~~-~~~~~gi~~~~d---g~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~--~~g~p~~i~~d~~G~lwva~  282 (372)
                      ...  ...+ ......++++|+   ++.+ ++...++.|..|++..............  ..+....++++++|++.++.
T Consensus       196 ~~~~~~~~~h~~~v~~~~~sp~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~  274 (379)
T 3jrp_A          196 YVLESTLEGHSDWVRDVAWSPTVLLRSYL-ASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALS  274 (379)
T ss_dssp             EEEEEEECCCSSCEEEEEECCCCSSSEEE-EEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEE
T ss_pred             eeeEEEEecccCcEeEEEECCCCCCCCeE-EEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEe
Confidence            111  1222 233457899999   6644 4444566788888765321111122111  22335567888998755544

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.97  E-value=0.0045  Score=62.34  Aligned_cols=63  Identities=19%  Similarity=0.223  Sum_probs=39.6

Q ss_pred             cEEEcCCCcEEEEecCCeEEEEe--CCceEEEEecC-C-----CcccCeEEcCCCCEEEEeCC------CcEEEEc-CCC
Q 017371           83 DASMDKNGVIYTATRDGWIKRLQ--DGTWVNWKFID-S-----QTLVGLTSTKEGHLIICDNA------NGLHKVS-EDG  147 (372)
Q Consensus        83 ~i~~d~~G~l~v~~~~g~i~~~~--~g~~~~~~~~~-~-----~p~~gl~~d~dG~l~v~~~~------~gv~~~~-~~g  147 (372)
                      +++++ ++.||+++.+|+|+.+|  +|+...-.... .     .......+. +|.+|++...      ..|+.+| .+|
T Consensus       123 ~~a~~-~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~-~~~v~v~~~~~~~~~~g~v~a~D~~tG  200 (677)
T 1kb0_A          123 GVALW-KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVF-KGKVIIGNGGAEYGVRGYITAYDAETG  200 (677)
T ss_dssp             CCEEE-TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEETTTC
T ss_pred             CceEE-CCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEE-CCEEEEEecccccCCCCEEEEEECCCC
Confidence            45554 67999999999999999  67654322222 1     111122333 6788887642      3488899 778

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=97.97  E-value=0.00046  Score=64.62  Aligned_cols=180  Identities=14%  Similarity=0.154  Sum_probs=105.8

Q ss_pred             CCccEEEcC--CCcEEEEecCC----eEEEEe-CC-ceEEEEecC--------------CCcccCeEEcC---CCCEEEE
Q 017371           80 HPEDASMDK--NGVIYTATRDG----WIKRLQ-DG-TWVNWKFID--------------SQTLVGLTSTK---EGHLIIC  134 (372)
Q Consensus        80 ~p~~i~~d~--~G~l~v~~~~g----~i~~~~-~g-~~~~~~~~~--------------~~p~~gl~~d~---dG~l~v~  134 (372)
                      ..++|++|+  ++.||++...|    .|++.+ .| .++.+....              .... +|++++   .+.||++
T Consensus        56 ~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~-~l~~~~~~~~~~l~~g  134 (394)
T 3b7f_A           56 TIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVF-WLTPGHASEPGTWYAG  134 (394)
T ss_dssp             EEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEE-EEEECCTTSTTCEEEE
T ss_pred             ceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceECCccccCCCccccccccccccee-EEEeCCCCCCCEEEEE
Confidence            467899998  78999998776    799987 44 455543211              1223 578885   6789998


Q ss_pred             eCCCcEEEEcCCC--cEEEeeec--C------------CcccccccceEEcc--CCcEEEEeCCCCCCCccccccccccc
Q 017371          135 DNANGLHKVSEDG--VENFLSYV--N------------GSKLRFANDVVEAS--DGSLYFTVSSSKYLPHEYCLDILEGK  196 (372)
Q Consensus       135 ~~~~gv~~~~~~g--~~~l~~~~--~------------~~~~~~~~~l~~d~--dG~i~vtd~~~~~~~~~~~~~~~~~~  196 (372)
                      ....||++.+..|  .+.+....  +            +........|++|+  .++||++..                 
T Consensus       135 ~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~-----------------  197 (394)
T 3b7f_A          135 TSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMS-----------------  197 (394)
T ss_dssp             EETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEE-----------------
T ss_pred             ecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEEC-----------------
Confidence            7667899887555  45432110  1            01112345788886  468999632                 


Q ss_pred             CCCeEEEEeCCCCeEEEEeCCcc-------------CcceEEEecC-CCEEEEEeCCCCeEEEEEccCCCCcceeeeccC
Q 017371          197 PHGQLLKYDPSSNITTLVADGFY-------------FANGVALSRD-EDYVVVCESWKFRCRKYWLKGERKGKLETFAEN  262 (372)
Q Consensus       197 ~~g~v~~~d~~t~~~~~~~~~~~-------------~~~gi~~~~d-g~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~  262 (372)
                       .+.|++.+.....++.+..+..             ....++++++ .+.+|+...  ..|++..-.|..   .+.+...
T Consensus       198 -~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~--~gl~~s~D~G~t---W~~~~~~  271 (394)
T 3b7f_A          198 -SGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNH--CGIYRMDRREGV---WKRIGDA  271 (394)
T ss_dssp             -TBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEET--TEEEEEETTTTE---EECGGGG
T ss_pred             -CCCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcC--CeEEEeCCCCCc---ceECCCC
Confidence             3568888765455555433221             1235677775 466888753  468877643321   1122111


Q ss_pred             CCC----CCceeEEc--CCCCEEEEEe
Q 017371          263 LPG----APDNINLA--PDGTFWIAII  283 (372)
Q Consensus       263 ~~g----~p~~i~~d--~~G~lwva~~  283 (372)
                      ++.    +...+++|  ..+.+|++..
T Consensus       272 l~~~~~~~~~~i~~~p~~~~~l~~~t~  298 (394)
T 3b7f_A          272 MPREVGDIGFPIVVHQRDPRTVWVFPM  298 (394)
T ss_dssp             SCTTTCSCEEEEEECSSCTTCEEEEEC
T ss_pred             CCCCCccceEEEEECCCCCCEEEEEec
Confidence            221    12246777  4578999874

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=97.96  E-value=0.00093  Score=70.79  Aligned_cols=171  Identities=10%  Similarity=0.076  Sum_probs=102.6

Q ss_pred             ccEEEcCCCc-EEEEecCCeEEEEe-C-CceEEEEe-----------cCCCcccCeEEc-CCCC-EEEEeCCCcEEEEc-
Q 017371           82 EDASMDKNGV-IYTATRDGWIKRLQ-D-GTWVNWKF-----------IDSQTLVGLTST-KEGH-LIICDNANGLHKVS-  144 (372)
Q Consensus        82 ~~i~~d~~G~-l~v~~~~g~i~~~~-~-g~~~~~~~-----------~~~~p~~gl~~d-~dG~-l~v~~~~~gv~~~~-  144 (372)
                      ...++.++|. |.++ .++.|+.++ . +.+..+..           ..+... .++++ |||+ |.++. ...++.++ 
T Consensus       248 ~~~~~SpDG~~la~~-~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~-~~~~S~pdG~~la~~~-~~~i~~~~~  324 (1045)
T 1k32_A          248 YPRHLNTDGRRILFS-KGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKF-AEDFSPLDGDLIAFVS-RGQAFIQDV  324 (1045)
T ss_dssp             CEEEEEESSSCEEEE-ETTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGG-EEEEEECGGGCEEEEE-TTEEEEECT
T ss_pred             ceeeEcCCCCEEEEE-eCCEEEEecCCceEeeeeccCcccccccccccccccc-eeeecCCCCCEEEEEE-cCEEEEEcC
Confidence            3457777775 4444 577888887 3 33332211           011345 89999 9996 44444 44578888 


Q ss_pred             CCC-cEEEeeecCCcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEE-EEeCCCCeEEEEeCCccCc
Q 017371          145 EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLL-KYDPSSNITTLVADGFYFA  221 (372)
Q Consensus       145 ~~g-~~~l~~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~-~~d~~t~~~~~~~~~~~~~  221 (372)
                      .++ ...+. ...+   ..+..+++. ||+ |+++.                  ...+++ .+|.++++.+.+.......
T Consensus       325 ~~~~~~~~~-~~~~---~~~~~~~~s-dg~~l~~~s------------------~~~~l~~~~d~~~~~~~~l~~~~~~~  381 (1045)
T 1k32_A          325 SGTYVLKVP-EPLR---IRYVRRGGD-TKVAFIHGT------------------REGDFLGIYDYRTGKAEKFEENLGNV  381 (1045)
T ss_dssp             TSSBEEECS-CCSC---EEEEEECSS-SEEEEEEEE------------------TTEEEEEEEETTTCCEEECCCCCCSE
T ss_pred             CCCceEEcc-CCCc---ceEEeeeEc-CCCeEEEEE------------------CCCceEEEEECCCCCceEecCCccce
Confidence            445 33321 1111   134566777 775 43321                  145788 8998877766655333455


Q ss_pred             ceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEE
Q 017371          222 NGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAI  282 (372)
Q Consensus       222 ~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~  282 (372)
                      ..++++|||+.++++.. ...|+.+++.+.+   .........+....+++++||+..+..
T Consensus       382 ~~~~~SpDG~~la~~~~-~~~v~~~d~~tg~---~~~~~~~~~~~v~~~~~SpDG~~la~~  438 (1045)
T 1k32_A          382 FAMGVDRNGKFAVVAND-RFEIMTVDLETGK---PTVIERSREAMITDFTISDNSRFIAYG  438 (1045)
T ss_dssp             EEEEECTTSSEEEEEET-TSEEEEEETTTCC---EEEEEECSSSCCCCEEECTTSCEEEEE
T ss_pred             eeeEECCCCCEEEEECC-CCeEEEEECCCCc---eEEeccCCCCCccceEECCCCCeEEEE
Confidence            68999999998887764 5689999986543   222222333445789999999855443

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=97.92  E-value=0.0033  Score=57.19  Aligned_cols=168  Identities=10%  Similarity=0.030  Sum_probs=95.6

Q ss_pred             cEEEEecCCeEEEEe--CCce-EEEEecCCCcccCeEEcC-------CCCEEEEeCCCcEEEEc-CCC--cEEEeeecCC
Q 017371           91 VIYTATRDGWIKRLQ--DGTW-VNWKFIDSQTLVGLTSTK-------EGHLIICDNANGLHKVS-EDG--VENFLSYVNG  157 (372)
Q Consensus        91 ~l~v~~~~g~i~~~~--~g~~-~~~~~~~~~p~~gl~~d~-------dG~l~v~~~~~gv~~~~-~~g--~~~l~~~~~~  157 (372)
                      .+..|..+|.|..|+  +++. ..+..  .... .+.+.+       |+.+.+-+....+..++ ..+  ...+...  .
T Consensus        50 ~l~sg~~Dg~v~iwd~~~~~~~~~~~~--~~v~-~~~~~~~~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~--~  124 (343)
T 3lrv_A           50 VCMCRCEDGALHFTQLKDSKTITTITT--PNPR-TGGEHPAIISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVD--S  124 (343)
T ss_dssp             EEEEEEETTEEEEEEESSSSCEEEEEE--ECCC-TTCCCCSEEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECC--C
T ss_pred             EEEEECCCCcEEEEECCCCcEEEEEec--CCce-eeeeCCceEEecCCCeEEEEEccCceEEeecCCcceeEEeecC--C
Confidence            566677899999998  5543 33321  2223 433433       44444333333333344 222  1111111  0


Q ss_pred             cccccccceEEcc--CCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCC--ccCcceEEEecCCCEE
Q 017371          158 SKLRFANDVVEAS--DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG--FYFANGVALSRDEDYV  233 (372)
Q Consensus       158 ~~~~~~~~l~~d~--dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~--~~~~~gi~~~~dg~~l  233 (372)
                        ...+..+++.+  +|+++++-+                 .++.|..+|..+++.......  ......++++||++ +
T Consensus       125 --~~~v~~~~~~~~~~~~~l~s~s-----------------~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~-~  184 (343)
T 3lrv_A          125 --ANEIIYMYGHNEVNTEYFIWAD-----------------NRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSL-L  184 (343)
T ss_dssp             --SSCEEEEECCC---CCEEEEEE-----------------TTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSC-E
T ss_pred             --CCCEEEEEcCCCCCCCEEEEEe-----------------CCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCC-E
Confidence              12466788889  888777532                 567899999887776544322  22356889999998 4


Q ss_pred             EEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 017371          234 VVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       234 ~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~  284 (372)
                      +++...++.|..+++...+... ..+.....+....+++.++|++.++...
T Consensus       185 lasg~~dg~i~iwd~~~~~~~~-~~~~~~h~~~v~~l~fs~~g~~l~s~~~  234 (343)
T 3lrv_A          185 LALYSPDGILDVYNLSSPDQAS-SRFPVDEEAKIKEVKFADNGYWMVVECD  234 (343)
T ss_dssp             EEEECTTSCEEEEESSCTTSCC-EECCCCTTSCEEEEEECTTSSEEEEEES
T ss_pred             EEEEcCCCEEEEEECCCCCCCc-cEEeccCCCCEEEEEEeCCCCEEEEEeC
Confidence            4554566789889886543220 1232212344677899999987776655

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=97.90  E-value=4.4e-05  Score=71.14  Aligned_cols=136  Identities=15%  Similarity=0.156  Sum_probs=59.9

Q ss_pred             CCcEEEEecCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCCEEEEe-CCCcEEEEc-CCC-c-EEEeeecCCccccc
Q 017371           89 NGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICD-NANGLHKVS-EDG-V-ENFLSYVNGSKLRF  162 (372)
Q Consensus        89 ~G~l~v~~~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~l~v~~-~~~gv~~~~-~~g-~-~~l~~~~~~~~~~~  162 (372)
                      ++.+|+++.+|.|+.+|  +|+...-... +... +..+..+|.+|++. ....++.+| .+| . ..+....+.  . .
T Consensus         9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~-s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~--~-~   83 (369)
T 2hz6_A            9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVL-QVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPE--L-V   83 (369)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSC-CCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHH--H-H
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEEecC-CCce-ecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcc--c-c
Confidence            67999999999999999  6765432222 4444 44344567777764 335588898 567 2 222111110  0 0


Q ss_pred             ccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCCCCe
Q 017371          163 ANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFR  242 (372)
Q Consensus       163 ~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~  242 (372)
                      ....++..++.||++.                  .++.|+.+|+++|+..+....   ......+|+++.+|+... ++.
T Consensus        84 ~~sp~~~~~~~v~~g~------------------~dg~v~a~D~~tG~~~w~~~~---~~~~~~~p~~~~v~~~~~-dg~  141 (369)
T 2hz6_A           84 QASPCRSSDGILYMGK------------------KQDIWYVIDLLTGEKQQTLSS---AFADSLSPSTSLLYLGRT-EYT  141 (369)
T ss_dssp             TTCSCC-----CCCCE------------------EEEEEEEECCC-------------------------EEEEEE-EEE
T ss_pred             ccCceEecCCEEEEEe------------------CCCEEEEEECCCCcEEEEecC---CCcccccccCCEEEEEec-CCE
Confidence            0111222456676632                  357899999998887654322   122445567777877653 457


Q ss_pred             EEEEEccCC
Q 017371          243 CRKYWLKGE  251 (372)
Q Consensus       243 i~~~~~~g~  251 (372)
                      |+.++..+.
T Consensus       142 v~a~d~~tG  150 (369)
T 2hz6_A          142 ITMYDTKTR  150 (369)
T ss_dssp             EECCCSSSS
T ss_pred             EEEEECCCC
Confidence            888887643

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=97.87  E-value=0.013  Score=52.12  Aligned_cols=176  Identities=15%  Similarity=0.107  Sum_probs=95.7

Q ss_pred             CCCccEEEcCCCc-EEEEecCCeEEEEe-CC---c-eEEEEecCCCcccCeEEcC--CCCEEEEeCC-CcEEEEc-CCC-
Q 017371           79 NHPEDASMDKNGV-IYTATRDGWIKRLQ-DG---T-WVNWKFIDSQTLVGLTSTK--EGHLIICDNA-NGLHKVS-EDG-  147 (372)
Q Consensus        79 ~~p~~i~~d~~G~-l~v~~~~g~i~~~~-~g---~-~~~~~~~~~~p~~gl~~d~--dG~l~v~~~~-~gv~~~~-~~g-  147 (372)
                      ....+++++++|. |..+..+|.|..|+ .+   + ...+..-.+... .+++.+  +|+++++... ..+..++ .++ 
T Consensus        10 ~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~-~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~   88 (297)
T 2pm7_B           10 EMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVW-RVDWAHPKFGTILASCSYDGKVMIWKEENGR   88 (297)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEE-EEEECCGGGCSEEEEEETTTEEEEEEBSSSC
T ss_pred             CceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeE-EEEecCCCcCCEEEEEcCCCEEEEEEcCCCc
Confidence            3456789999885 45556899999998 42   2 223322223345 888864  3776665444 4466677 544 


Q ss_pred             cEEEeeecCCcccccccceEEccC--CcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCe---EEEEeCCccCcc
Q 017371          148 VENFLSYVNGSKLRFANDVVEASD--GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI---TTLVADGFYFAN  222 (372)
Q Consensus       148 ~~~l~~~~~~~~~~~~~~l~~d~d--G~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~---~~~~~~~~~~~~  222 (372)
                      ...+... .+. ...++.+++.++  |.+.++-+                 .++.|..+|..++.   ...+.......+
T Consensus        89 ~~~~~~~-~~h-~~~v~~v~~~p~~~g~~l~s~s-----------------~d~~v~~wd~~~~~~~~~~~~~~h~~~v~  149 (297)
T 2pm7_B           89 WSQIAVH-AVH-SASVNSVQWAPHEYGPMLLVAS-----------------SDGKVSVVEFKENGTTSPIIIDAHAIGVN  149 (297)
T ss_dssp             BCCCEEE-CCC-SSCEEEEEECCGGGCSEEEEEE-----------------TTSEEEEEEBCSSSCBCCEEEECCSSCEE
T ss_pred             eEEEEEe-ecC-CCceeEEEeCcCCCCcEEEEEE-----------------CCCcEEEEEecCCCceeeeeeecccCccc
Confidence            2221111 111 124667888876  66665422                 46677777765432   122222222345


Q ss_pred             eEEEecC-------------CCEEEEEeCCCCeEEEEEccCCCCcc-e-eeeccCCCCCCceeEEcCCC
Q 017371          223 GVALSRD-------------EDYVVVCESWKFRCRKYWLKGERKGK-L-ETFAENLPGAPDNINLAPDG  276 (372)
Q Consensus       223 gi~~~~d-------------g~~l~v~~~~~~~i~~~~~~g~~~~~-~-~~~~~~~~g~p~~i~~d~~G  276 (372)
                      .++++|+             ++ ++++...+..|..+++...+... . ..+ ....+....+++.+++
T Consensus       150 ~~~~~p~~~~~~~~~~~~~~~~-~l~sgs~D~~v~lwd~~~~~~~~~~~~~l-~~H~~~V~~v~~sp~~  216 (297)
T 2pm7_B          150 SASWAPATIEEDGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQTYVLESTL-EGHSDWVRDVAWSPTV  216 (297)
T ss_dssp             EEEECCCC------------CC-EEEEEETTSCEEEEEEETTTTEEEEEEEE-CCCSSCEEEEEECCCC
T ss_pred             eEeecCCcccccccCCCCCCcc-eEEEEcCCCcEEEEEEcCCCceEEEEEEe-cCCCCceEEEEECCCC
Confidence            6778876             34 45555556677777775432111 1 122 1223345678888885

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=97.85  E-value=0.0064  Score=57.03  Aligned_cols=226  Identities=11%  Similarity=-0.009  Sum_probs=119.9

Q ss_pred             CccEEEcCCCc-EEEEecCCeEEEEe--CCceE-EEEecCCCcccCeEEcCCCCEEEEeCC-CcEEEEc-CCC---cEEE
Q 017371           81 PEDASMDKNGV-IYTATRDGWIKRLQ--DGTWV-NWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG---VENF  151 (372)
Q Consensus        81 p~~i~~d~~G~-l~v~~~~g~i~~~~--~g~~~-~~~~~~~~p~~gl~~d~dG~l~v~~~~-~gv~~~~-~~g---~~~l  151 (372)
                      ..++++.++|. |.+|+.+|.|..|+  +++.. .+........ .+..  ++.+.++... ..+..++ ...   ...+
T Consensus       150 V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~-~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~~~  226 (420)
T 4gga_A          150 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVG-SLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATL  226 (420)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE-EEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEE
T ss_pred             EEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceE-EEee--CCCEEEEEeCCCceeEeeecccceeeEEe
Confidence            45788888884 55566888888888  44432 2222222223 4444  4555554433 3355555 322   2222


Q ss_pred             eeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeE-----EEEeCCccCcceEEE
Q 017371          152 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT-----TLVADGFYFANGVAL  226 (372)
Q Consensus       152 ~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~-----~~~~~~~~~~~gi~~  226 (372)
                      ...     ......+.+.++|+..++-.                 .++.+..++..+++.     ............+++
T Consensus       227 ~~h-----~~~~~~~~~~~~g~~l~s~~-----------------~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~  284 (420)
T 4gga_A          227 SGH-----SQEVCGLRWAPDGRHLASGG-----------------NDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAW  284 (420)
T ss_dssp             ECC-----SSCEEEEEECTTSSEEEEEE-----------------TTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEE
T ss_pred             ccc-----ccceeeeeecCCCCeeeeee-----------------ccccceEEeeccccccceeeeeecccCCceeeeee
Confidence            111     12345677778887666532                 456677777654432     111111222346788


Q ss_pred             ecCCCEEEEEe--CCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHH
Q 017371          227 SRDEDYVVVCE--SWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLA  304 (372)
Q Consensus       227 ~~dg~~l~v~~--~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~  304 (372)
                      +|++..++.+.  +.+..|..+++...+.  ...+.  .......+...++++..++..+.                   
T Consensus       285 ~p~~~~~la~~~gs~D~~I~iwd~~t~~~--~~~~~--~~~~v~~~~~~~~~~~lv~~sg~-------------------  341 (420)
T 4gga_A          285 CPWQSNVLATGGGTSDRHIRIWNVCSGAC--LSAVD--AHSQVCSILWSPHYKELISGHGF-------------------  341 (420)
T ss_dssp             CTTCTTEEEEEECTTTCEEEEEETTTTEE--EEEEE--CSSCEEEEEEETTTTEEEEEECT-------------------
T ss_pred             CCCcccEEEEEeecCCCEEEEEeCCcccc--ceeec--cccceeeeeecCCCCeEEEEEec-------------------
Confidence            88776566543  3445677777654321  11221  22235567778888766665431                   


Q ss_pred             hcCccccccccCCCceEEEEEC-CCCcEEEEEECCCCCeeccceeeEEE-CCEEEEEeCCCCeEEEEeC
Q 017371          305 AYPKLFSQFITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL  371 (372)
Q Consensus       305 ~~p~~~~~~~~~~~~~~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~L~igs~~~~~i~~~~~  371 (372)
                                   ..+.|..+| ++++.+..+....+    .++++... +|+..+..-....|.++++
T Consensus       342 -------------~d~~I~iwd~~~~~~v~~l~gH~~----~V~~l~~spdg~~l~S~s~D~tvriWdv  393 (420)
T 4gga_A          342 -------------AQNQLVIWKYPTMAKVAELKGHTS----RVLSLTMSPDGATVASAAADETLRLWRC  393 (420)
T ss_dssp             -------------TTCCEEEEETTTCCEEEEECCCSS----CEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred             -------------CCCEEEEEECCCCcEEEEEcCCCC----CEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence                         134566666 46888887764333    47777775 4443333334456766664

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=97.84  E-value=0.00014  Score=73.58  Aligned_cols=129  Identities=8%  Similarity=0.002  Sum_probs=82.4

Q ss_pred             CccEEEcCCCcEEEEecCCeEEEEe--CCceEEEEecCC----CcccCeEEcCCCCEE-EEeC---------CCcEEEEc
Q 017371           81 PEDASMDKNGVIYTATRDGWIKRLQ--DGTWVNWKFIDS----QTLVGLTSTKEGHLI-ICDN---------ANGLHKVS  144 (372)
Q Consensus        81 p~~i~~d~~G~l~v~~~~g~i~~~~--~g~~~~~~~~~~----~p~~gl~~d~dG~l~-v~~~---------~~gv~~~~  144 (372)
                      +.++.+.++|.++..+.+|.|+.++  +|+.+.+.....    ... .+++.|||+.. ++..         ...++.++
T Consensus        18 ~~~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d   96 (719)
T 1z68_A           18 TFFPNWISGQEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNAS-NYGLSPDRQFVYLESDYSKLWRYSYTATYYIYD   96 (719)
T ss_dssp             CCCCEESSSSEEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCS-EEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred             CCccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEcccccccccee-eEEECCCCCeEEEEecCceeEEeecceEEEEEE
Confidence            3467788888766666788999999  566555443221    145 88999999844 3322         13477777


Q ss_pred             -CCC-c---EEEeeecCCcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCc
Q 017371          145 -EDG-V---ENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF  218 (372)
Q Consensus       145 -~~g-~---~~l~~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~  218 (372)
                       .+| .   ..+    .    .....+++.|||+ |.++                   ..+.|+.+|..+++...+....
T Consensus        97 ~~~g~~~~~~~l----~----~~~~~~~~SPDG~~la~~-------------------~~~~i~~~~~~~g~~~~l~~~~  149 (719)
T 1z68_A           97 LSNGEFVRGNEL----P----RPIQYLCWSPVGSKLAYV-------------------YQNNIYLKQRPGDPPFQITFNG  149 (719)
T ss_dssp             TTTTEECCSSCC----C----SSBCCEEECSSTTCEEEE-------------------ETTEEEEESSTTSCCEECCCCC
T ss_pred             CCCCccccceec----C----cccccceECCCCCEEEEE-------------------ECCeEEEEeCCCCCcEEEecCC
Confidence             455 3   222    1    2356789999996 4443                   2357898988777665443211


Q ss_pred             -------------------cCcceEEEecCCCEEEEEe
Q 017371          219 -------------------YFANGVALSRDEDYVVVCE  237 (372)
Q Consensus       219 -------------------~~~~gi~~~~dg~~l~v~~  237 (372)
                                         ....+++|+|||+.|+++.
T Consensus       150 ~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~  187 (719)
T 1z68_A          150 RENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAE  187 (719)
T ss_dssp             BTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEE
T ss_pred             CcCCeEcccccceeeeecccCcccEEECCCCCEEEEEE
Confidence                               1124799999999888764

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=97.84  E-value=0.0004  Score=70.23  Aligned_cols=195  Identities=11%  Similarity=0.051  Sum_probs=98.4

Q ss_pred             CccEEEcCCCc-EEEEec---------CCeEEEEe--CCce---EEEEecCCCcccCeEEcCCCCEEEEeCCCcEEEEc-
Q 017371           81 PEDASMDKNGV-IYTATR---------DGWIKRLQ--DGTW---VNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-  144 (372)
Q Consensus        81 p~~i~~d~~G~-l~v~~~---------~g~i~~~~--~g~~---~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~-  144 (372)
                      ..++++.+||+ |.++..         ++.|+.++  +|+.   ..+   .+... .+++.|||+..+......|+.++ 
T Consensus        62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~-~~~~SPDG~~la~~~~~~i~~~~~  137 (719)
T 1z68_A           62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQ-YLCWSPVGSKLAYVYQNNIYLKQR  137 (719)
T ss_dssp             CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBC-CEEECSSTTCEEEEETTEEEEESS
T ss_pred             eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---Ccccc-cceECCCCCEEEEEECCeEEEEeC
Confidence            56789999996 555543         57888898  5554   332   23455 89999999643333355688888 


Q ss_pred             CCC-cEEEeeec-CC-----cc--------cccccceEEccCCc-EEEEeCC-CCCC---C-----ccc--cccc-----
Q 017371          145 EDG-VENFLSYV-NG-----SK--------LRFANDVVEASDGS-LYFTVSS-SKYL---P-----HEY--CLDI-----  192 (372)
Q Consensus       145 ~~g-~~~l~~~~-~~-----~~--------~~~~~~l~~d~dG~-i~vtd~~-~~~~---~-----~~~--~~~~-----  192 (372)
                      .+| ...+.... ..     .+        +.....+++.|||+ |.++... ....   .     ..+  ...+     
T Consensus       138 ~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~  217 (719)
T 1z68_A          138 PGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKA  217 (719)
T ss_dssp             TTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBT
T ss_pred             CCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCC
Confidence            555 43332110 00     00        01224789999996 4433211 0000   0     000  0000     


Q ss_pred             ccccCCCeEEEEeCCCCeEE---EEeC------CccCcceEEEecCCCEEEEE--eCCC--CeEEEEE----ccCCCCcc
Q 017371          193 LEGKPHGQLLKYDPSSNITT---LVAD------GFYFANGVALSRDEDYVVVC--ESWK--FRCRKYW----LKGERKGK  255 (372)
Q Consensus       193 ~~~~~~g~v~~~d~~t~~~~---~~~~------~~~~~~gi~~~~dg~~l~v~--~~~~--~~i~~~~----~~g~~~~~  255 (372)
                      -.......|+.+|.++++..   .+..      .......++|+||++ ++++  +...  .+|+.++    ..+.+...
T Consensus       218 g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~-~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~  296 (719)
T 1z68_A          218 GAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDER-VCLQWLKRVQNVSVLSICDFREDWQTWDCPK  296 (719)
T ss_dssp             TSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSE-EEEEEEESSTTEEEEEEEEECSSSSSEECCG
T ss_pred             CCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCe-EEEEEeccccCeEEEEEEcccCCCCCCceEE
Confidence            00112337888888776531   2111      111235688999976 5444  2222  3577888    54432221


Q ss_pred             eee-eccCCCCCCc-----eeEEcCCCC-EEE
Q 017371          256 LET-FAENLPGAPD-----NINLAPDGT-FWI  280 (372)
Q Consensus       256 ~~~-~~~~~~g~p~-----~i~~d~~G~-lwv  280 (372)
                      ... ......+..+     .+++.+||+ +++
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~  328 (719)
T 1z68_A          297 TQEHIEESRTGWAGGFFVSTPVFSYDAISYYK  328 (719)
T ss_dssp             GGEEEEECSSSCSSSSSCCCCEECTTSSCEEE
T ss_pred             EEecccccCCceEccccCCccEECCCCCeEEE
Confidence            110 0012223233     678899996 444

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.82  E-value=0.013  Score=57.99  Aligned_cols=45  Identities=13%  Similarity=0.121  Sum_probs=31.0

Q ss_pred             CCceEEEEEC-CCCcEEEEEECCCCCeeccceeeEEECCEEEEEeCCC
Q 017371          317 GGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTS  363 (372)
Q Consensus       317 ~~~~~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~igs~~~  363 (372)
                      ...+.+..+| .+|+++..+..+.+.....+  ..+.+|++|++...+
T Consensus       491 t~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~--~y~~~G~qyv~~~~G  536 (599)
T 1w6s_A          491 TLDGYLKARDSDTGDLLWKFKIPSGAIGYPM--TYTHKGTQYVAIYYG  536 (599)
T ss_dssp             CTTSEEEEEETTTCCEEEEEECSSCCCSCCE--EEEETTEEEEEEEEC
T ss_pred             CCCCeEEEEECCCCCEEEEeeCCCCcEeccE--EEEeCCEEEEEEEcc
Confidence            3357899999 56999999988766422221  224689999987644

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.82  E-value=0.032  Score=55.16  Aligned_cols=64  Identities=17%  Similarity=0.121  Sum_probs=39.5

Q ss_pred             cEEEc-CCCc----EEEEecCCeEEEEe--CCceEEEEecCC-----CcccCeEEcCCCCEEEEeC------CCcEEEEc
Q 017371           83 DASMD-KNGV----IYTATRDGWIKRLQ--DGTWVNWKFIDS-----QTLVGLTSTKEGHLIICDN------ANGLHKVS  144 (372)
Q Consensus        83 ~i~~d-~~G~----l~v~~~~g~i~~~~--~g~~~~~~~~~~-----~p~~gl~~d~dG~l~v~~~------~~gv~~~~  144 (372)
                      ++++. .+|.    ||+++.+++|+.+|  +|+...-.....     .......+. +|.+|++..      ...|+.+|
T Consensus       110 g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g~V~vg~~g~e~g~~g~v~A~D  188 (599)
T 1w6s_A          110 GLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KDKVIIGSSGAELGVRGYLTAYD  188 (599)
T ss_dssp             CCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TTEEEECCBCGGGTCCCEEEEEE
T ss_pred             ceEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-CCEEEEEecccccCCCCeEEEEE
Confidence            45663 2567    99999999999999  776543222211     111122232 678888753      24588899


Q ss_pred             -CCC
Q 017371          145 -EDG  147 (372)
Q Consensus       145 -~~g  147 (372)
                       .+|
T Consensus       189 ~~TG  192 (599)
T 1w6s_A          189 VKTG  192 (599)
T ss_dssp             TTTC
T ss_pred             CCCC
Confidence             778

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=97.78  E-value=0.0099  Score=54.65  Aligned_cols=149  Identities=9%  Similarity=-0.014  Sum_probs=88.7

Q ss_pred             CCCccEEEcC-CC-cEEEEecCCeEEEEe--CCceEEEEecCCCcccCeEEcCC---CCEEEE-eCCCcEEEEc-CCC--
Q 017371           79 NHPEDASMDK-NG-VIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKE---GHLIIC-DNANGLHKVS-EDG--  147 (372)
Q Consensus        79 ~~p~~i~~d~-~G-~l~v~~~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~d---G~l~v~-~~~~gv~~~~-~~g--  147 (372)
                      ....++++.+ ++ .++.++.+|.|..|+  .++............ .+.+.+.   +.++++ .....+..++ .++  
T Consensus       100 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~  178 (408)
T 4a11_B          100 YSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVY-SHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC  178 (408)
T ss_dssp             SCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEE-EEEECSSCSSCCEEEEEESSSSEEEEESSSSCC
T ss_pred             CcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCcee-eeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce
Confidence            3456788887 55 466666899999999  454433333333445 7777764   335444 4444577788 555  


Q ss_pred             cEEEeeecCCcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCe--EEEE----------
Q 017371          148 VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI--TTLV----------  214 (372)
Q Consensus       148 ~~~l~~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~--~~~~----------  214 (372)
                      ...+...     ...+..+++.+++. ++++-                 ..++.|..+|..+++  ...+          
T Consensus       179 ~~~~~~~-----~~~v~~~~~~~~~~~ll~~~-----------------~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  236 (408)
T 4a11_B          179 SHILQGH-----RQEILAVSWSPRYDYILATA-----------------SADSRVKLWDVRRASGCLITLDQHNGKKSQA  236 (408)
T ss_dssp             CEEECCC-----CSCEEEEEECSSCTTEEEEE-----------------ETTSCEEEEETTCSSCCSEECCTTTTCSCCC
T ss_pred             eeeecCC-----CCcEEEEEECCCCCcEEEEE-----------------cCCCcEEEEECCCCCccccccccccccccee
Confidence            4333211     12456889999886 55542                 245678888875443  1111          


Q ss_pred             -----eCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCC
Q 017371          215 -----ADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGE  251 (372)
Q Consensus       215 -----~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~  251 (372)
                           .........++++++++.++.+. .++.|..+++...
T Consensus       237 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~  277 (408)
T 4a11_B          237 VESANTAHNGKVNGLCFTSDGLHLLTVG-TDNRMRLWNSSNG  277 (408)
T ss_dssp             TTTSSCSCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTC
T ss_pred             eccccccccCceeEEEEcCCCCEEEEec-CCCeEEEEECCCC
Confidence                 00112235688999999777665 4567888888653

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=97.77  E-value=0.0035  Score=59.17  Aligned_cols=240  Identities=12%  Similarity=0.023  Sum_probs=126.1

Q ss_pred             CCccEEEcC-CC-cEEEEecCCeEEEEe-CC-ceEEEEecCC---CcccCeEEcCCCCEEEEeCCCc-EEEEcCCC--cE
Q 017371           80 HPEDASMDK-NG-VIYTATRDGWIKRLQ-DG-TWVNWKFIDS---QTLVGLTSTKEGHLIICDNANG-LHKVSEDG--VE  149 (372)
Q Consensus        80 ~p~~i~~d~-~G-~l~v~~~~g~i~~~~-~g-~~~~~~~~~~---~p~~gl~~d~dG~l~v~~~~~g-v~~~~~~g--~~  149 (372)
                      ...+|++.| +| .|+.+..||.|..|| .+ ..+.+.....   ... .++++++|.++++....| |..++.++  ..
T Consensus       166 ~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~  244 (435)
T 4e54_B          166 SITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFC-SLDVSASSRMVVTGDNVGNVILLNMDGKELW  244 (435)
T ss_dssp             CCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCC-CEEEETTTTEEEEECSSSBEEEEESSSCBCC
T ss_pred             CEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEE-EEEECCCCCEEEEEeCCCcEeeeccCcceeE
Confidence            456789986 56 455666899999999 44 4444433211   234 788999998777654444 66677433  22


Q ss_pred             EEeeecCCcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEE-Ee--CC-ccCcceE
Q 017371          150 NFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VA--DG-FYFANGV  224 (372)
Q Consensus       150 ~l~~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~-~~--~~-~~~~~gi  224 (372)
                      .+    .+. ...+..+++.+++. ++++-                 ..++.|..+|..+.+... +.  .+ -...+.+
T Consensus       245 ~~----~~h-~~~v~~v~~~p~~~~~~~s~-----------------s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~  302 (435)
T 4e54_B          245 NL----RMH-KKKVTHVALNPCCDWFLATA-----------------SVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAA  302 (435)
T ss_dssp             CS----BCC-SSCEEEEEECTTCSSEEEEE-----------------ETTSBCCEEETTTCCSSSCCSBCCBCSSCEEEC
T ss_pred             EE----ecc-cceEEeeeecCCCceEEEEe-----------------cCcceeeEEecccccccceEEEeeeccccccce
Confidence            21    111 12466889988875 44432                 135566677765433211 11  11 1123467


Q ss_pred             EEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCC-----CCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhH
Q 017371          225 ALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENL-----PGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLI  299 (372)
Q Consensus       225 ~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~-----~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~  299 (372)
                      +|+|||++|+.+. .++.|..|++.......  .+....     ...+-.....+++++.+........           
T Consensus       303 ~~spdg~~l~s~~-~D~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-----------  368 (435)
T 4e54_B          303 CFSPDGARLLTTD-QKSEIRVYSASQWDCPL--GLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPN-----------  368 (435)
T ss_dssp             CBCTTSSEEEEEE-SSSCEEEEESSSSSSEE--EECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTT-----------
T ss_pred             eECCCCCeeEEEc-CCCEEEEEECCCCccce--EEecccccccccceeEEEEEcCCCCEEEEEEcCCCC-----------
Confidence            8999999666554 56678888876432111  111110     0112334556667655544321000           


Q ss_pred             HHHHHhcCccccccccCCCceEEEEEC-CCCcEEEEEECCCCCeeccceeeE-EE-CCEEEEEeCCCCeEEEEeC
Q 017371          300 KHVLAAYPKLFSQFITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGL-QV-DNHLYVISLTSNFIGKVQL  371 (372)
Q Consensus       300 r~~~~~~p~~~~~~~~~~~~~~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~-~~-~g~L~igs~~~~~i~~~~~  371 (372)
                                 ..+......+.|..++ .+|+.+..+..+...   .+.++. +. +|++.+++. .+.|.++++
T Consensus       369 -----------~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~---~v~s~~~fspdg~~lasg~-d~~i~iW~~  428 (435)
T 4e54_B          369 -----------FKSCTPYELRTIDVFDGNSGKMMCQLYDPESS---GISSLNEFNPMGDTLASAM-GYHILIWSQ  428 (435)
T ss_dssp             -----------SCCSSTTCCCCEEEECSSSCCEEEEECCSSCC---CCCCEEEECTTSSCEEEEC-SSEEEECCC
T ss_pred             -----------eEEEEecCCCEEEEEECCCCcEEEEEeCCCCC---cEEEEEEECCCCCEEEEEc-CCcEEEEEC
Confidence                       0000122233466666 457877776544322   344443 44 455555443 567777665

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.76  E-value=0.028  Score=52.86  Aligned_cols=249  Identities=14%  Similarity=0.090  Sum_probs=119.0

Q ss_pred             CccEEEcCCCcEEEEecCCeEEEEe--CCceEE-EEecCCCcccCeEEcCCCCEEEEeCCCcEEEEc-CCC--cEEEeee
Q 017371           81 PEDASMDKNGVIYTATRDGWIKRLQ--DGTWVN-WKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG--VENFLSY  154 (372)
Q Consensus        81 p~~i~~d~~G~l~v~~~~g~i~~~~--~g~~~~-~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~-~~g--~~~l~~~  154 (372)
                      ..+++++ +..++++..+|.|..++  +++... +........ .+.+++ ..++++..+..+..++ .++  ...+...
T Consensus       162 v~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~-~~~~~~-~~l~s~s~dg~i~~wd~~~~~~~~~~~~~  238 (445)
T 2ovr_B          162 VWSSQMR-DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVR-CMHLHE-KRVVSGSRDATLRVWDIETGQCLHVLMGH  238 (445)
T ss_dssp             EEEEEEE-TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE-EEEEET-TEEEEEETTSEEEEEESSSCCEEEEEECC
T ss_pred             EEEEEec-CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEE-EEEecC-CEEEEEeCCCEEEEEECCCCcEEEEEcCC
Confidence            3445565 45777777777777777  654333 322223333 666653 3455554444455555 444  2222111


Q ss_pred             cCC---cccccccceEEccCCcEEEEeCCCC-----CCCcc-c-------ccccccccCCCeEEEEeCCCCeEEEEeCCc
Q 017371          155 VNG---SKLRFANDVVEASDGSLYFTVSSSK-----YLPHE-Y-------CLDILEGKPHGQLLKYDPSSNITTLVADGF  218 (372)
Q Consensus       155 ~~~---~~~~~~~~l~~d~dG~i~vtd~~~~-----~~~~~-~-------~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~  218 (372)
                      ...   ..+..-.-++...||.|.+-|....     +..+. .       ...+..+..++.|..+|..+++......+.
T Consensus       239 ~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  318 (445)
T 2ovr_B          239 VAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGH  318 (445)
T ss_dssp             SSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred             cccEEEEEECCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEECCCEEEEEeCCCeEEEEECCCCCEEEEEcCC
Confidence            000   0000000111223444444432110     00000 0       001122345677888888777655444332


Q ss_pred             cCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeecc--CCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcc
Q 017371          219 YFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAE--NLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSS  296 (372)
Q Consensus       219 ~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~--~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~  296 (372)
                      .. .-.++..+++.++.+ ..++.|..+++...+  ....+..  ...+....+..+  +++.++...            
T Consensus       319 ~~-~v~~~~~~~~~l~~~-~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~------------  380 (445)
T 2ovr_B          319 QS-LTSGMELKDNILVSG-NADSTVKIWDIKTGQ--CLQTLQGPNKHQSAVTCLQFN--KNFVITSSD------------  380 (445)
T ss_dssp             CS-CEEEEEEETTEEEEE-ETTSCEEEEETTTCC--EEEEECSTTSCSSCEEEEEEC--SSEEEEEET------------
T ss_pred             cc-cEEEEEEeCCEEEEE-eCCCeEEEEECCCCc--EEEEEccCCCCCCCEEEEEEC--CCEEEEEeC------------
Confidence            22 223455567755544 456678888875432  1222221  122223445554  566655554            


Q ss_pred             hhHHHHHHhcCccccccccCCCceEEEEEC-CCCcEEEEEECCC-CCeeccceeeEEECCE--EEEEeCCCC---eEEEE
Q 017371          297 KLIKHVLAAYPKLFSQFITLGGGAHLIHVA-EDGTIIRNLVDPT-GQLMSFVTSGLQVDNH--LYVISLTSN---FIGKV  369 (372)
Q Consensus       297 ~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~-~~g~~~~~~~~~~-g~~~~~~t~~~~~~g~--L~igs~~~~---~i~~~  369 (372)
                                            .+.|..++ .+|+.+..+.... +.....+.++....+.  |..|+..+.   +|.++
T Consensus       381 ----------------------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~  438 (445)
T 2ovr_B          381 ----------------------DGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVL  438 (445)
T ss_dssp             ----------------------TSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEE
T ss_pred             ----------------------CCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEE
Confidence                                  46777777 4588887773221 2223357777776433  344554443   58888


Q ss_pred             eCC
Q 017371          370 QLS  372 (372)
Q Consensus       370 ~~~  372 (372)
                      +++
T Consensus       439 df~  441 (445)
T 2ovr_B          439 DFD  441 (445)
T ss_dssp             ECC
T ss_pred             ECC
Confidence            764

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.76  E-value=0.014  Score=53.02  Aligned_cols=180  Identities=12%  Similarity=0.126  Sum_probs=99.7

Q ss_pred             CCccEEEcCCCcEEEEecCCeEEEEe-CC-ceEEEEecC---CCcccCeEEcCCCCEEEEeCCCcEEEEcCCC--cEEEe
Q 017371           80 HPEDASMDKNGVIYTATRDGWIKRLQ-DG-TWVNWKFID---SQTLVGLTSTKEGHLIICDNANGLHKVSEDG--VENFL  152 (372)
Q Consensus        80 ~p~~i~~d~~G~l~v~~~~g~i~~~~-~g-~~~~~~~~~---~~p~~gl~~d~dG~l~v~~~~~gv~~~~~~g--~~~l~  152 (372)
                      ...+|++.+++.+|+....|.|++-. .| .++......   ..++.++++++ +++|++....++++-...|  .+.+.
T Consensus        37 ~~~~v~~~~~~~~~~~G~~g~i~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~~g~~g~i~~S~DgG~tW~~~~  115 (327)
T 2xbg_A           37 TILDMSFIDRHHGWLVGVNATLMETRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWIVGEPPIMLHTTDGGQSWSQIP  115 (327)
T ss_dssp             CEEEEEESSSSCEEEEETTTEEEEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEEEEETTEEEEESSTTSSCEECC
T ss_pred             cEEEEEECCCCcEEEEcCCCeEEEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEEEECCCeEEEECCCCCCceECc
Confidence            45567777777888877788888776 34 455543221   22333888875 7888876444455544444  44432


Q ss_pred             eecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCcc-CcceEEEecCCC
Q 017371          153 SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFY-FANGVALSRDED  231 (372)
Q Consensus       153 ~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~-~~~gi~~~~dg~  231 (372)
                      .... .+ ..+..|++.+++++|+..                  ..+.|++-+-.....+.+..... ...+++++++++
T Consensus       116 ~~~~-~~-~~~~~i~~~~~~~~~~~~------------------~~g~v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~  175 (327)
T 2xbg_A          116 LDPK-LP-GSPRLIKALGNGSAEMIT------------------NVGAIYRTKDSGKNWQALVQEAIGVMRNLNRSPSGE  175 (327)
T ss_dssp             CCTT-CS-SCEEEEEEEETTEEEEEE------------------TTCCEEEESSTTSSEEEEECSCCCCEEEEEECTTSC
T ss_pred             cccC-CC-CCeEEEEEECCCCEEEEe------------------CCccEEEEcCCCCCCEEeecCCCcceEEEEEcCCCc
Confidence            2110 00 124567777788888753                  24567776433345555543321 224677888876


Q ss_pred             EEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 017371          232 YVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       232 ~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~  284 (372)
                       +|+... ...+++-+-.+...-+  ......+.....++++++|++|++...
T Consensus       176 -~~~~g~-~G~~~~S~d~gG~tW~--~~~~~~~~~~~~~~~~~~g~~~~~~~~  224 (327)
T 2xbg_A          176 -YVAVSS-RGSFYSTWEPGQTAWE--PHNRTTSRRLHNMGFTPDGRLWMIVNG  224 (327)
T ss_dssp             -EEEEET-TSSEEEEECTTCSSCE--EEECCSSSCEEEEEECTTSCEEEEETT
T ss_pred             -EEEEEC-CCcEEEEeCCCCCcee--ECCCCCCCccceeEECCCCCEEEEeCC
Confidence             444443 3457765533222111  111112223456778899999987754

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=97.73  E-value=0.0029  Score=57.34  Aligned_cols=201  Identities=11%  Similarity=0.064  Sum_probs=108.8

Q ss_pred             CCCccEEEcCCCc-EEEEecCCeEEEEe--CCceEEEEecCCCcccCeEE--cCCCCEEEEeC-CCcEEEEc-CCC--cE
Q 017371           79 NHPEDASMDKNGV-IYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTS--TKEGHLIICDN-ANGLHKVS-EDG--VE  149 (372)
Q Consensus        79 ~~p~~i~~d~~G~-l~v~~~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~--d~dG~l~v~~~-~~gv~~~~-~~g--~~  149 (372)
                      ....++++.++|. |++++.+|.|..|+  +++............ .+++  .++|+++++.. ...+..++ .++  ..
T Consensus        87 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~  165 (368)
T 3mmy_A           87 GPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVK-TIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMM  165 (368)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEE-EEEEEECSSCEEEEEEETTSEEEEECSSCSSCSE
T ss_pred             CCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceE-EEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEE
Confidence            3566789998885 66667899999999  555544444344455 8888  88887555544 34577777 555  44


Q ss_pred             EEeeecCC--cccccccceEEccCCcEEEEeCCCCCC----------Ccccc-----------cccccccCCCeEEEEeC
Q 017371          150 NFLSYVNG--SKLRFANDVVEASDGSLYFTVSSSKYL----------PHEYC-----------LDILEGKPHGQLLKYDP  206 (372)
Q Consensus       150 ~l~~~~~~--~~~~~~~~l~~d~dG~i~vtd~~~~~~----------~~~~~-----------~~~~~~~~~g~v~~~d~  206 (372)
                      .+......  .......-+....++.+.+-+....-.          .....           ..+..+..++.|..+|.
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~  245 (368)
T 3mmy_A          166 VLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYI  245 (368)
T ss_dssp             EEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEES
T ss_pred             EEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEec
Confidence            33221100  001111223333455555544321100          00000           00334445677777776


Q ss_pred             CCCeE---EEEeCCcc-------------CcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCcee
Q 017371          207 SSNIT---TLVADGFY-------------FANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNI  270 (372)
Q Consensus       207 ~t~~~---~~~~~~~~-------------~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i  270 (372)
                      .+...   ........             ....++++|+++.++.+. .++.|..+++...+  ....+. ...+....+
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~-~dg~i~iwd~~~~~--~~~~~~-~~~~~v~~~  321 (368)
T 3mmy_A          246 NPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVG-SDGRFSFWDKDART--KLKTSE-QLDQPISAC  321 (368)
T ss_dssp             SCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEE-TTSCEEEEETTTTE--EEEECC-CCSSCEEEE
T ss_pred             CCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEc-cCCeEEEEECCCCc--EEEEec-CCCCCceEE
Confidence            54311   11111111             356789999998666554 46678888876431  112222 223446779


Q ss_pred             EEcCCCCEEEEEec
Q 017371          271 NLAPDGTFWIAIIK  284 (372)
Q Consensus       271 ~~d~~G~lwva~~~  284 (372)
                      ++.++|.+.++...
T Consensus       322 ~~s~~g~~l~~~s~  335 (368)
T 3mmy_A          322 CFNHNGNIFAYASS  335 (368)
T ss_dssp             EECTTSSCEEEEEC
T ss_pred             EECCCCCeEEEEec
Confidence            99999976666543

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.72  E-value=0.0023  Score=54.45  Aligned_cols=141  Identities=12%  Similarity=0.046  Sum_probs=79.8

Q ss_pred             CcccCeEEcCCCCEEEEeCCCcEEEEc-CCC-cEEEe---eecCCcccccccceEEccCCcEEEEeCCCCCCCccccccc
Q 017371          118 QTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENFL---SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDI  192 (372)
Q Consensus       118 ~p~~gl~~d~dG~l~v~~~~~gv~~~~-~~g-~~~l~---~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~  192 (372)
                      ... .++++|+|.||.+. ...|++++ .++ ...+.   ..+....-+.-..+.+|++|.||.+               
T Consensus        42 ~~~-~laf~P~G~LYaV~-~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav---------------  104 (236)
T 1tl2_A           42 NFK-FLFLSPGGELYGVL-NDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV---------------  104 (236)
T ss_dssp             TCS-EEEECTTSCEEEEE-TTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE---------------
T ss_pred             cce-eEEECCCccEEEEe-CCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe---------------
Confidence            334 89999999999983 44599999 452 11111   1111001122457899999999996               


Q ss_pred             ccccCCCeEEEEeCCC-CeE------EEEe-CCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCC-Cc---ceeeec
Q 017371          193 LEGKPHGQLLKYDPSS-NIT------TLVA-DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGER-KG---KLETFA  260 (372)
Q Consensus       193 ~~~~~~g~v~~~d~~t-~~~------~~~~-~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~-~~---~~~~~~  260 (372)
                          .+|.|||+++-+ +.-      ..+- .+...-.-+.++|+|. ||...  +.++++-...... ..   ....+.
T Consensus       105 ----~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~-Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g  177 (236)
T 1tl2_A          105 ----SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGY-LYAVH--GQQFYKALPPVSNQDNWLARATKIG  177 (236)
T ss_dssp             ----ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSC-EEEEE--TTEEEEECCCSSTTCCHHHHCEEEE
T ss_pred             ----CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCce-EEEEe--CCcEEecCCCCCCCcccccccceec
Confidence                348999999733 111      1122 2333346788999997 88887  5567664332110 00   011111


Q ss_pred             cCCCCCCceeEEcCCCCEEEEE
Q 017371          261 ENLPGAPDNINLAPDGTFWIAI  282 (372)
Q Consensus       261 ~~~~g~p~~i~~d~~G~lwva~  282 (372)
                      ...-..-.-+..+++|+||..+
T Consensus       178 ~~g~~~yr~l~f~~~G~l~~v~  199 (236)
T 1tl2_A          178 QGGWDTFKFLFFSSVGTLFGVQ  199 (236)
T ss_dssp             SSSGGGEEEEEECTTSCEEEEE
T ss_pred             cCCcceEEEEEECCCCcEEEEe
Confidence            0000011125589999999888

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=97.72  E-value=0.0018  Score=63.22  Aligned_cols=149  Identities=11%  Similarity=-0.014  Sum_probs=92.1

Q ss_pred             CCccEEEcCCCcEEEEecCCeEEEEe--CCc-e-EEEEecCCCcccCe--EEcCCC-CEEEEeCC-CcEEEEc-CCC--c
Q 017371           80 HPEDASMDKNGVIYTATRDGWIKRLQ--DGT-W-VNWKFIDSQTLVGL--TSTKEG-HLIICDNA-NGLHKVS-EDG--V  148 (372)
Q Consensus        80 ~p~~i~~d~~G~l~v~~~~g~i~~~~--~g~-~-~~~~~~~~~p~~gl--~~d~dG-~l~v~~~~-~gv~~~~-~~g--~  148 (372)
                      ...++++.+++.|.+|+.||.|..||  ++. . ..+..-.+... ++  ++.++| +++++... .-+..+| .++  .
T Consensus       268 ~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~-sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~  346 (524)
T 2j04_B          268 LITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYIL-SVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATT  346 (524)
T ss_dssp             CEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEE-EEEEECCTTSCCEEEEEETTSEEEEECGGGHHHH
T ss_pred             CEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEE-EEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcc
Confidence            34567887777888888999999999  343 2 22322223344 77  456777 77666544 4466777 555  3


Q ss_pred             EEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeE-EEEeCCccCcceEEEe
Q 017371          149 ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT-TLVADGFYFANGVALS  227 (372)
Q Consensus       149 ~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~-~~~~~~~~~~~gi~~~  227 (372)
                      ..+.....+   ..+..+++.|+|..+++-+                 ..+.|..+|..++.. ..+.......+.++++
T Consensus       347 ~~~~~~~~~---~~v~~v~fsp~~~~l~s~~-----------------~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~S  406 (524)
T 2j04_B          347 KTTVSRFRG---SNLVPVVYCPQIYSYIYSD-----------------GASSLRAVPSRAAFAVHPLVSRETTITAIGVS  406 (524)
T ss_dssp             CEEEEECSC---CSCCCEEEETTTTEEEEEC-----------------SSSEEEEEETTCTTCCEEEEECSSCEEEEECC
T ss_pred             ccccccccc---CcccceEeCCCcCeEEEeC-----------------CCCcEEEEECcccccceeeecCCCceEEEEeC
Confidence            333221111   1246789999998877633                 355677788766553 2233233345689999


Q ss_pred             cCCCEEEEEeCCCCeEEEEEccC
Q 017371          228 RDEDYVVVCESWKFRCRKYWLKG  250 (372)
Q Consensus       228 ~dg~~l~v~~~~~~~i~~~~~~g  250 (372)
                      |+|+.| ++.+.++.|..+++.+
T Consensus       407 p~g~~l-~Sgs~Dgtv~lwd~~~  428 (524)
T 2j04_B          407 RLHPMV-LAGSADGSLIITNAAR  428 (524)
T ss_dssp             SSCCBC-EEEETTTEEECCBSCS
T ss_pred             CCCCeE-EEEECCCEEEEEechH
Confidence            999854 5555667777776643

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=97.68  E-value=0.011  Score=53.04  Aligned_cols=183  Identities=13%  Similarity=0.067  Sum_probs=95.2

Q ss_pred             CCccEEEcCCCc-EEEEecCCeEEEEe--CCce---EEEEecCCCcccCeEEcC--CCCEEEE-eCCCcEEEEc-CCC-c
Q 017371           80 HPEDASMDKNGV-IYTATRDGWIKRLQ--DGTW---VNWKFIDSQTLVGLTSTK--EGHLIIC-DNANGLHKVS-EDG-V  148 (372)
Q Consensus        80 ~p~~i~~d~~G~-l~v~~~~g~i~~~~--~g~~---~~~~~~~~~p~~gl~~d~--dG~l~v~-~~~~gv~~~~-~~g-~  148 (372)
                      ...+++++++|. |..+..|+.|..|+  +++.   ..+....+... .+++.+  +|+++++ ..+..+..++ .++ .
T Consensus        15 ~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~-~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~   93 (316)
T 3bg1_A           15 MIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVW-QVAWAHPMYGNILASCSYDRKVIIWREENGTW   93 (316)
T ss_dssp             CEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEE-EEEECCGGGSSCEEEEETTSCEEEECCSSSCC
T ss_pred             eEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEE-EEEeCCCCCCCEEEEEECCCEEEEEECCCCcc
Confidence            456789998886 45556899999888  5542   22222223445 888864  3665554 4445577788 555 3


Q ss_pred             EEEeeecCCcccccccceEEccC--CcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCe-EEEEe--CC-ccCcc
Q 017371          149 ENFLSYVNGSKLRFANDVVEASD--GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI-TTLVA--DG-FYFAN  222 (372)
Q Consensus       149 ~~l~~~~~~~~~~~~~~l~~d~d--G~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~-~~~~~--~~-~~~~~  222 (372)
                      ..... ..+. ...++.+++.++  |.+.++-+                 .++.|..+|..++. .+...  .+ ...-+
T Consensus        94 ~~~~~-~~~h-~~~V~~v~~~p~~~g~~lasgs-----------------~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~  154 (316)
T 3bg1_A           94 EKSHE-HAGH-DSSVNSVCWAPHDYGLILACGS-----------------SDGAISLLTYTGEGQWEVKKINNAHTIGCN  154 (316)
T ss_dssp             CEEEE-ECCC-SSCCCEEEECCTTTCSCEEEEC-----------------SSSCEEEEEECSSSCEEECCBTTSSSSCBC
T ss_pred             eEEEE-ccCC-CCceEEEEECCCCCCcEEEEEc-----------------CCCCEEEEecCCCCCcceeeeeccccCCcc
Confidence            22221 1111 135678899887  66665532                 45666666655432 22111  11 11234


Q ss_pred             eEEEecCC----------------CEEEEEeCCCCeEEEEEccCCCC-cceeeeccCCCCCCceeEEcCCC----CEEEE
Q 017371          223 GVALSRDE----------------DYVVVCESWKFRCRKYWLKGERK-GKLETFAENLPGAPDNINLAPDG----TFWIA  281 (372)
Q Consensus       223 gi~~~~dg----------------~~l~v~~~~~~~i~~~~~~g~~~-~~~~~~~~~~~g~p~~i~~d~~G----~lwva  281 (372)
                      .++++|+.                ..++++...+..|..+++..... .....+. ...+....+++.+++    ++.++
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~-~h~~~V~~v~~sp~~~~~~~~las  233 (316)
T 3bg1_A          155 AVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLE-AHSDWVRDVAWAPSIGLPTSTIAS  233 (316)
T ss_dssp             CCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCB-CCSSCEEEEECCCCSSCSCCEEEE
T ss_pred             eEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecc-cCCCceEEEEecCCCCCCCceEEE
Confidence            56777762                12455555556666666643211 1111111 122334567777765    44444


Q ss_pred             Ee
Q 017371          282 II  283 (372)
Q Consensus       282 ~~  283 (372)
                      ..
T Consensus       234 ~s  235 (316)
T 3bg1_A          234 CS  235 (316)
T ss_dssp             EE
T ss_pred             Ec
Confidence            43

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=97.67  E-value=0.027  Score=50.08  Aligned_cols=111  Identities=8%  Similarity=-0.078  Sum_probs=65.5

Q ss_pred             CeEEcCCCCEEEEeCCCc-EEEEc-CCC--cEEEeeecCCcccccccceEEcc--CCcEEEEeCCCCCCCcccccccccc
Q 017371          122 GLTSTKEGHLIICDNANG-LHKVS-EDG--VENFLSYVNGSKLRFANDVVEAS--DGSLYFTVSSSKYLPHEYCLDILEG  195 (372)
Q Consensus       122 gl~~d~dG~l~v~~~~~g-v~~~~-~~g--~~~l~~~~~~~~~~~~~~l~~d~--dG~i~vtd~~~~~~~~~~~~~~~~~  195 (372)
                      .+++.++|+++++....| +..++ .++  ...+.....+. ...+..+++.+  +|++.++-.                
T Consensus        16 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~d~~~l~s~~----------------   78 (351)
T 3f3f_A           16 DVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAH-DSSIVAIDWASPEYGRIIASAS----------------   78 (351)
T ss_dssp             EEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECC-SSCEEEEEECCGGGCSEEEEEE----------------
T ss_pred             EEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccC-CCcEEEEEEcCCCCCCEEEEEc----------------
Confidence            899999998666544444 66666 433  22222221211 13466788887  577666522                


Q ss_pred             cCCCeEEEEeCCCCe----------EEEEeCCccCcceEEEecC--CCEEEEEeCCCCeEEEEEccCC
Q 017371          196 KPHGQLLKYDPSSNI----------TTLVADGFYFANGVALSRD--EDYVVVCESWKFRCRKYWLKGE  251 (372)
Q Consensus       196 ~~~g~v~~~d~~t~~----------~~~~~~~~~~~~gi~~~~d--g~~l~v~~~~~~~i~~~~~~g~  251 (372)
                       .++.|..+|..+++          ...+.........++++++  ++.++.+. .++.|..+++...
T Consensus        79 -~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~v~iwd~~~~  144 (351)
T 3f3f_A           79 -YDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLG-NDGILRLYDALEP  144 (351)
T ss_dssp             -TTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE-TTCEEEEEECSST
T ss_pred             -CCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEec-CCCcEEEecCCCh
Confidence             45667777766542          2222222334467899999  88665554 5667888887654

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.67  E-value=0.028  Score=55.43  Aligned_cols=42  Identities=12%  Similarity=0.120  Sum_probs=29.9

Q ss_pred             ceEEEEECC-CCcEEEEEECCCCCeeccceeeE-EECCEEEEEeCCC
Q 017371          319 GAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGL-QVDNHLYVISLTS  363 (372)
Q Consensus       319 ~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~-~~~g~L~igs~~~  363 (372)
                      .+.+..+|. +|+++..+..+.+.. .  +-+. +.+|++|++...+
T Consensus       506 dg~l~A~D~~tG~~lW~~~~~~g~~-a--~P~~y~~~G~qYv~~~~G  549 (582)
T 1flg_A          506 DGYFKAFDAKSGKELWKFQTGSGIV-S--PPITWEQDGEQYLGVTVG  549 (582)
T ss_dssp             TSEEEEEETTTCCEEEEEECSSCCC-S--CCEEEEETTEEEEEEEEC
T ss_pred             CCcEEEEECCCCCEEEEecCCCCcc-c--CceEEEECCEEEEEEEcc
Confidence            478999994 699999999876642 1  2223 3689999986543

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.67  E-value=0.018  Score=52.32  Aligned_cols=175  Identities=7%  Similarity=0.040  Sum_probs=96.8

Q ss_pred             ccEEEcCCCcEEEEecCCeEEEEeC-C-ceEEEEec---CCCcccCeEEcCCCCEEEEeCCCcEEEEcCCC--cEEEeee
Q 017371           82 EDASMDKNGVIYTATRDGWIKRLQD-G-TWVNWKFI---DSQTLVGLTSTKEGHLIICDNANGLHKVSEDG--VENFLSY  154 (372)
Q Consensus        82 ~~i~~d~~G~l~v~~~~g~i~~~~~-g-~~~~~~~~---~~~p~~gl~~d~dG~l~v~~~~~gv~~~~~~g--~~~l~~~  154 (372)
                      .+|++++ +.+|++...|.|++-.+ | .++.....   .+.+. ++++.+++++|++....++++-...|  .+.+...
T Consensus        83 ~~i~~~~-~~~~~~g~~g~i~~S~DgG~tW~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~g~v~~S~DgG~tW~~~~~~  160 (327)
T 2xbg_A           83 NSVSFQG-NEGWIVGEPPIMLHTTDGGQSWSQIPLDPKLPGSPR-LIKALGNGSAEMITNVGAIYRTKDSGKNWQALVQE  160 (327)
T ss_dssp             EEEEEET-TEEEEEEETTEEEEESSTTSSCEECCCCTTCSSCEE-EEEEEETTEEEEEETTCCEEEESSTTSSEEEEECS
T ss_pred             EEEEecC-CeEEEEECCCeEEEECCCCCCceECccccCCCCCeE-EEEEECCCCEEEEeCCccEEEEcCCCCCCEEeecC
Confidence            3577775 68888777788888663 4 35544322   13456 77777788888887544566655445  4444322


Q ss_pred             cCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCC-CCeEEEEeCC-ccCcceEEEecCCCE
Q 017371          155 VNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS-SNITTLVADG-FYFANGVALSRDEDY  232 (372)
Q Consensus       155 ~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~-t~~~~~~~~~-~~~~~gi~~~~dg~~  232 (372)
                      ..    .....++++++|++|+..                  ..|.+++-+-. ....+.+... -.....++++++++ 
T Consensus       161 ~~----~~~~~~~~~~~~~~~~~g------------------~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~-  217 (327)
T 2xbg_A          161 AI----GVMRNLNRSPSGEYVAVS------------------SRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGR-  217 (327)
T ss_dssp             CC----CCEEEEEECTTSCEEEEE------------------TTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSC-
T ss_pred             CC----cceEEEEEcCCCcEEEEE------------------CCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCC-
Confidence            11    234578888889888753                  24567776432 2334443221 12234577788886 


Q ss_pred             EEEEeCCCCeEEEEEccCCCCcceeeeccC-CCC--CCceeEEcCCCCEEEEEec
Q 017371          233 VVVCESWKFRCRKYWLKGERKGKLETFAEN-LPG--APDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       233 l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~-~~g--~p~~i~~d~~G~lwva~~~  284 (372)
                      +|++.. ...+++...++.+.  .+..... ++.  ....+..++++.+|++...
T Consensus       218 ~~~~~~-~G~~~~s~~D~G~t--W~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~  269 (327)
T 2xbg_A          218 LWMIVN-GGKIAFSDPDNSEN--WGELLSPLRRNSVGFLDLAYRTPNEVWLAGGA  269 (327)
T ss_dssp             EEEEET-TTEEEEEETTEEEE--ECCCBCTTSSCCSCEEEEEESSSSCEEEEEST
T ss_pred             EEEEeC-CceEEEecCCCCCe--eEeccCCcccCCcceEEEEecCCCEEEEEeCC
Confidence            666554 34455543332211  1111100 111  1234667788899998654

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.65  E-value=0.017  Score=58.32  Aligned_cols=42  Identities=19%  Similarity=0.303  Sum_probs=29.9

Q ss_pred             ceEEEEEC-CCCcEEEEEECCCCCeeccceeeE-EECCEEEEEeCCC
Q 017371          319 GAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGL-QVDNHLYVISLTS  363 (372)
Q Consensus       319 ~~~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~-~~~g~L~igs~~~  363 (372)
                      .+.+..+| .+|+++..+..+.+..-.   -+. ..+|+.|++...+
T Consensus       495 dg~l~a~D~~tG~~lw~~~~~~~~~~~---p~ty~~~G~qyv~~~~G  538 (689)
T 1yiq_A          495 DGRVIAYAADTGEKLWEQPAASGVMAA---PVTYSVDGEQYVTFMAG  538 (689)
T ss_dssp             TSEEEEEETTTCCEEEEEECSSCCCSC---CEEEEETTEEEEEEEEC
T ss_pred             CCcEEEEECCCCccceeeeCCCCcccC---ceEEEECCEEEEEEEec
Confidence            57899999 469999999887664222   233 4689999986633

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=97.63  E-value=0.037  Score=50.60  Aligned_cols=199  Identities=11%  Similarity=0.023  Sum_probs=101.5

Q ss_pred             CCCccEEEcCCCcEEEEecCCeEEEEe-C-CceEEEEecCCCcccCeEEcCCCCEE-EEeCC-CcEEEEc-CCC--cEEE
Q 017371           79 NHPEDASMDKNGVIYTATRDGWIKRLQ-D-GTWVNWKFIDSQTLVGLTSTKEGHLI-ICDNA-NGLHKVS-EDG--VENF  151 (372)
Q Consensus        79 ~~p~~i~~d~~G~l~v~~~~g~i~~~~-~-g~~~~~~~~~~~p~~gl~~d~dG~l~-v~~~~-~gv~~~~-~~g--~~~l  151 (372)
                      ....++++.++|.+.++..+..+..|+ + ++... ........ .+.+.+++++. ++... ..+..+| .++  ...+
T Consensus        20 ~~V~~v~fs~dg~~la~g~~~~~~iw~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~   97 (355)
T 3vu4_A           20 NPVTDYEFNQDQSCLILSTLKSFEIYNVHPVAHIM-SQEMRHLS-KVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRI   97 (355)
T ss_dssp             CCCCEEEECTTSSEEEEECSSEEEEEEETTEEEEE-EEECSCCC-EEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEE
T ss_pred             CceEEEEECCCCCEEEEEcCCEEEEEecCCcceee-eeecCCeE-EEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEE
Confidence            356789999999866655444576777 3 32222 12112233 55666666544 33333 3577777 566  3333


Q ss_pred             eeecCCc--cc-ccccceEEccCCcEEEEeCCCC-CCCccc-----------cccccc-ccCCCeEEEEeCCCCe-----
Q 017371          152 LSYVNGS--KL-RFANDVVEASDGSLYFTVSSSK-YLPHEY-----------CLDILE-GKPHGQLLKYDPSSNI-----  210 (372)
Q Consensus       152 ~~~~~~~--~~-~~~~~l~~d~dG~i~vtd~~~~-~~~~~~-----------~~~~~~-~~~~g~v~~~d~~t~~-----  210 (372)
                      ..  ...  .. -.++.+.+..++.|++-|.... -.....           ...... +...|.|..+|..+++     
T Consensus        98 ~~--~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~  175 (355)
T 3vu4_A           98 KV--DAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQ  175 (355)
T ss_dssp             EC--SSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEEEECCC-------
T ss_pred             EC--CCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEEEECCCCCccccc
Confidence            21  110  00 0122333334556666543321 000000           000111 4567788888887654     


Q ss_pred             ------------EEEEeCCccCcceEEEecCCCEEEEEeCCCCe-EEEEEccCCCCcceeeeccC-CCCCCceeEEcCCC
Q 017371          211 ------------TTLVADGFYFANGVALSRDEDYVVVCESWKFR-CRKYWLKGERKGKLETFAEN-LPGAPDNINLAPDG  276 (372)
Q Consensus       211 ------------~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~-i~~~~~~g~~~~~~~~~~~~-~~g~p~~i~~d~~G  276 (372)
                                  ...+...-.....++++|||+.|..+ +.+.. |..+++...+  ....+... ..+....++++++|
T Consensus       176 ~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~-s~d~~~v~iwd~~~~~--~~~~~~~g~h~~~v~~~~~s~~~  252 (355)
T 3vu4_A          176 DQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATC-SQDGTIIRVFKTEDGV--LVREFRRGLDRADVVDMKWSTDG  252 (355)
T ss_dssp             -----------CCEEECCCSSCEEEEEECTTSSEEEEE-ETTCSEEEEEETTTCC--EEEEEECTTCCSCEEEEEECTTS
T ss_pred             cccccccccCcccEEEEccCCceEEEEECCCCCEEEEE-eCCCCEEEEEECCCCc--EEEEEEcCCCCCcEEEEEECCCC
Confidence                        23332223334678999999855544 45565 7777775432  12233211 33446678899999


Q ss_pred             CEEEEEec
Q 017371          277 TFWIAIIK  284 (372)
Q Consensus       277 ~lwva~~~  284 (372)
                      ++.++...
T Consensus       253 ~~l~s~s~  260 (355)
T 3vu4_A          253 SKLAVVSD  260 (355)
T ss_dssp             CEEEEEET
T ss_pred             CEEEEEEC
Confidence            87776654

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.63  E-value=0.018  Score=57.86  Aligned_cols=43  Identities=9%  Similarity=0.248  Sum_probs=28.9

Q ss_pred             ceEEEEECC-CCcEEEEEECCCCCeeccceeeEEECCEEEEEeCCC
Q 017371          319 GAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTS  363 (372)
Q Consensus       319 ~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~igs~~~  363 (372)
                      .+.+..+|. +|+++..+..+.+.....+  ....+|++|++...+
T Consensus       478 dg~l~a~d~~tG~~l~~~~~~~~~~~~p~--~~~~~G~~yva~~~G  521 (668)
T 1kv9_A          478 AGQMHAYSADKGEALWQFEAQSGIVAAPM--TFELAGRQYVAIMAG  521 (668)
T ss_dssp             TSEEEEEETTTCCEEEEEECSSCCCSCCE--EEEETTEEEEEEEEC
T ss_pred             cccchhhhhhcChhheEecCCCCcccCce--EEEECCEEEEEEEec
Confidence            468999985 5999999988755321221  224689999876543

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.61  E-value=0.048  Score=51.22  Aligned_cols=242  Identities=14%  Similarity=0.095  Sum_probs=128.9

Q ss_pred             ccEEEcCCCcEEEEecCCeEEEEe--CCceEE-EEecCCCcccCeEEcCCCCEEEEeCCCcEEEEc-CCC--cEEEeeec
Q 017371           82 EDASMDKNGVIYTATRDGWIKRLQ--DGTWVN-WKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG--VENFLSYV  155 (372)
Q Consensus        82 ~~i~~d~~G~l~v~~~~g~i~~~~--~g~~~~-~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~-~~g--~~~l~~~~  155 (372)
                      .++..+ +..|++++.+|.|..|+  +++... +....+... .++++ ++.++.+..+..+..++ .++  ...+....
T Consensus       123 ~~~~~~-g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~-~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~  199 (445)
T 2ovr_B          123 TCLQFC-GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVW-SSQMR-DNIIISGSTDRTLKVWNAETGECIHTLYGHT  199 (445)
T ss_dssp             EEEEEE-TTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEE-EEEEE-TTEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred             EEEEEc-CCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEE-EEEec-CCEEEEEeCCCeEEEEECCcCcEEEEECCCC
Confidence            367778 46899999999999999  776443 333333445 78877 34455555545566677 666  33332111


Q ss_pred             CC---cccccccceE-EccCCcEEEEeCCCCCCC-----c-cc-------ccccccccCCCeEEEEeCCCCeEEEEeCCc
Q 017371          156 NG---SKLRFANDVV-EASDGSLYFTVSSSKYLP-----H-EY-------CLDILEGKPHGQLLKYDPSSNITTLVADGF  218 (372)
Q Consensus       156 ~~---~~~~~~~~l~-~d~dG~i~vtd~~~~~~~-----~-~~-------~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~  218 (372)
                      ..   ..+. .+.++ ...||.|.+-|....-..     + ..       ...+..+..++.|..+|..+++......+.
T Consensus       200 ~~v~~~~~~-~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  278 (445)
T 2ovr_B          200 STVRCMHLH-EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGH  278 (445)
T ss_dssp             SCEEEEEEE-TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCC
T ss_pred             CcEEEEEec-CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEECCCEEEEEcCCCEEEEEECCCCcEeEEecCC
Confidence            10   0011 11222 335677776654321000     0 00       011233445677888887766654444332


Q ss_pred             cC-cceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcch
Q 017371          219 YF-ANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSK  297 (372)
Q Consensus       219 ~~-~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~  297 (372)
                      .. ...+++  +++.++.+. .++.|..+++...+  ....+. ........+..  ++++.++...             
T Consensus       279 ~~~v~~~~~--~~~~l~~~~-~d~~i~i~d~~~~~--~~~~~~-~~~~~v~~~~~--~~~~l~~~~~-------------  337 (445)
T 2ovr_B          279 TNRVYSLQF--DGIHVVSGS-LDTSIRVWDVETGN--CIHTLT-GHQSLTSGMEL--KDNILVSGNA-------------  337 (445)
T ss_dssp             SSCEEEEEE--CSSEEEEEE-TTSCEEEEETTTCC--EEEEEC-CCCSCEEEEEE--ETTEEEEEET-------------
T ss_pred             CCceEEEEE--CCCEEEEEe-CCCeEEEEECCCCC--EEEEEc-CCcccEEEEEE--eCCEEEEEeC-------------
Confidence            21 223444  777666555 46678888876432  112221 12222333444  4555555544             


Q ss_pred             hHHHHHHhcCccccccccCCCceEEEEECC-CCcEEEEEECCCCCeeccceeeEEECCEEEEEeCCCCeEEEEeC
Q 017371          298 LIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL  371 (372)
Q Consensus       298 ~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~igs~~~~~i~~~~~  371 (372)
                                           .+.|..+|. +++.+..+..+.+. ...++++..+++.|..|+ ....|.++++
T Consensus       338 ---------------------dg~i~vwd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~l~s~~-~dg~v~iwd~  389 (445)
T 2ovr_B          338 ---------------------DSTVKIWDIKTGQCLQTLQGPNKH-QSAVTCLQFNKNFVITSS-DDGTVKLWDL  389 (445)
T ss_dssp             ---------------------TSCEEEEETTTCCEEEEECSTTSC-SSCEEEEEECSSEEEEEE-TTSEEEEEET
T ss_pred             ---------------------CCeEEEEECCCCcEEEEEccCCCC-CCCEEEEEECCCEEEEEe-CCCeEEEEEC
Confidence                                 356777773 67888877654322 345677777666666666 4466776664

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.59  E-value=0.0076  Score=60.60  Aligned_cols=111  Identities=13%  Similarity=0.182  Sum_probs=67.3

Q ss_pred             CCcEEEEecCCeEEEEe--CCceEEEEecCCC-------------cccCeEEcCCCCEEEEeCCCcEEEEc-CCCcEEEe
Q 017371           89 NGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQ-------------TLVGLTSTKEGHLIICDNANGLHKVS-EDGVENFL  152 (372)
Q Consensus        89 ~G~l~v~~~~g~i~~~~--~g~~~~~~~~~~~-------------p~~gl~~d~dG~l~v~~~~~gv~~~~-~~g~~~l~  152 (372)
                      +|.||+++.++.|+.+|  +|+.. |......             .. +++++ ++++|++.....|+.+| .+|.....
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~-W~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~v~v~~~dg~l~alD~~tG~~~W~  142 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKEL-WRYDPEVAKVKARTSCCDAVNR-GVALW-GDKVYVGTLDGRLIALDAKTGKAIWS  142 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEE-EEECCCCCGGGGGGCTTCSCCC-CCEEE-BTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCChhc-eEECCCCCccccccccccCCcc-ceEEE-CCEEEEEcCCCEEEEEECCCCCEeee
Confidence            68999999999999999  67654 3321111             12 55665 68899987666799999 78833322


Q ss_pred             eecCCc--ccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEe
Q 017371          153 SYVNGS--KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA  215 (372)
Q Consensus       153 ~~~~~~--~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~  215 (372)
                      ......  .......-.+ .+|.+|++.....            ....|.|+.+|.+||+..+..
T Consensus       143 ~~~~~~~~~~~~~~~P~v-~~~~v~vg~~~~~------------~~~~g~v~a~D~~tG~~~W~~  194 (668)
T 1kv9_A          143 QQTTDPAKPYSITGAPRV-VKGKVIIGNGGAE------------YGVRGFVSAYDADTGKLAWRF  194 (668)
T ss_dssp             EECSCTTSSCBCCSCCEE-ETTEEEECCBCTT------------TCCBCEEEEEETTTCCEEEEE
T ss_pred             eccCCCCCcceecCCCEE-ECCEEEEeCCCCC------------cCCCCEEEEEECCCCcEEEEe
Confidence            221110  0011111122 3678888643211            113578999999999877644

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=97.58  E-value=0.021  Score=57.60  Aligned_cols=178  Identities=8%  Similarity=0.034  Sum_probs=90.9

Q ss_pred             ccEEEcCCCc--EEEEecCC----eEEEEe--CCceEEEEecCCCcccCeEEcCCCC-EEEEeCCC-------------c
Q 017371           82 EDASMDKNGV--IYTATRDG----WIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNAN-------------G  139 (372)
Q Consensus        82 ~~i~~d~~G~--l~v~~~~g----~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~-l~v~~~~~-------------g  139 (372)
                      .++.+.+||+  +|..+..|    .|+.++  +|+............ ++++. ||+ |+++....             .
T Consensus       132 ~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~-~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~  209 (693)
T 3iuj_A          132 DQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFS-GISWL-GNEGFFYSSYDKPDGSELSARTDQHK  209 (693)
T ss_dssp             EEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESC-CCEEE-TTTEEEEEESSCCC-------CCCCE
T ss_pred             EEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceec-cEEEe-CCCEEEEEEecCcccccccccCCCcE
Confidence            3457778885  33333333    466677  565433211111123 67787 775 66654331             2


Q ss_pred             EEEEc-CCC--cEEEeeecCC-cccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCC--eEE
Q 017371          140 LHKVS-EDG--VENFLSYVNG-SKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN--ITT  212 (372)
Q Consensus       140 v~~~~-~~g--~~~l~~~~~~-~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~--~~~  212 (372)
                      |++.+ .++  ...+...... .. ....++.+++||+ |+++..+              ......|+.+|.+++  +.+
T Consensus       210 v~~~~lgt~~~~~~~v~~~~~~~~-~~~~~~~~SpDg~~l~~~~~~--------------~~~~~~i~~~d~~~~~~~~~  274 (693)
T 3iuj_A          210 VYFHRLGTAQEDDRLVFGAIPAQH-HRYVGATVTEDDRFLLISAAN--------------STSGNRLYVKDLSQENAPLL  274 (693)
T ss_dssp             EEEEETTSCGGGCEEEESCSGGGC-CSEEEEEECTTSCEEEEEEES--------------SSSCCEEEEEETTSTTCCCE
T ss_pred             EEEEECCCCcccceEEEecCCCCC-eEEEEEEEcCCCCEEEEEEcc--------------CCCCcEEEEEECCCCCCceE
Confidence            66665 333  1122211111 11 1234677889996 4454321              112357999987655  555


Q ss_pred             EEeCCccCcceEEEecCCCEEEEEeCC---CCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEE
Q 017371          213 LVADGFYFANGVALSRDEDYVVVCESW---KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWI  280 (372)
Q Consensus       213 ~~~~~~~~~~gi~~~~dg~~l~v~~~~---~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv  280 (372)
                      .+......- --.++++|+.+|+....   +.+|+++++++......+.+......   .+.++.+|+..+
T Consensus       275 ~l~~~~~~~-~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~---~~~~s~~g~~lv  341 (693)
T 3iuj_A          275 TVQGDLDAD-VSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQ---VLTVHSGSGYLF  341 (693)
T ss_dssp             EEECSSSSC-EEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSS---CEEEEEETTEEE
T ss_pred             EEeCCCCce-EEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCC---EEEEEEECCEEE
Confidence            554433221 12267888888877543   36899999986543333444433222   225555565333

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.58  E-value=0.03  Score=52.53  Aligned_cols=173  Identities=13%  Similarity=0.069  Sum_probs=82.6

Q ss_pred             CccEEEcCCCcEEEEecCCeEEEEe--CCceE-EEEecCCCcccCeEEcCCCCEEEEeCCCcEEEEc-CCC-cEEEeeec
Q 017371           81 PEDASMDKNGVIYTATRDGWIKRLQ--DGTWV-NWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENFLSYV  155 (372)
Q Consensus        81 p~~i~~d~~G~l~v~~~~g~i~~~~--~g~~~-~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~-~~g-~~~l~~~~  155 (372)
                      ..++.++ +..|++++.+|.|..++  +++.. .+....+... .++++ ++.++.+..+..+..++ .++ ........
T Consensus       176 v~~l~~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~-~l~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~  252 (435)
T 1p22_A          176 VLCLQYD-ERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVL-HLRFN-NGMMVTCSKDRSIAVWDMASPTDITLRRVL  252 (435)
T ss_dssp             EEEEECC-SSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEE-EEECC-TTEEEEEETTSCEEEEECSSSSCCEEEEEE
T ss_pred             EEEEEEC-CCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEE-EEEEc-CCEEEEeeCCCcEEEEeCCCCCCceeeeEe
Confidence            3445552 23556666778787777  44432 2222222333 66664 23444444444466666 444 21111111


Q ss_pred             CCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCcc-CcceEEEecCCCEEE
Q 017371          156 NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFY-FANGVALSRDEDYVV  234 (372)
Q Consensus       156 ~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~-~~~gi~~~~dg~~l~  234 (372)
                      .+. ...+..+++  +|+..++                 +..++.|..+|..+++......+.. ....+++  +++.++
T Consensus       253 ~~~-~~~v~~~~~--~~~~l~s-----------------~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~  310 (435)
T 1p22_A          253 VGH-RAAVNVVDF--DDKYIVS-----------------ASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVV  310 (435)
T ss_dssp             CCC-SSCEEEEEE--ETTEEEE-----------------EETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEE
T ss_pred             cCC-CCcEEEEEe--CCCEEEE-----------------EeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEE
Confidence            111 113344555  4444443                 2256789999988776554433322 2223444  566555


Q ss_pred             EEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 017371          235 VCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       235 v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~  284 (372)
                      .+ ..++.|..+++...+  ....+. ...+....+.+  +|++.++...
T Consensus       311 ~g-~~dg~i~iwd~~~~~--~~~~~~-~h~~~v~~~~~--~~~~l~sg~~  354 (435)
T 1p22_A          311 SG-SSDNTIRLWDIECGA--CLRVLE-GHEELVRCIRF--DNKRIVSGAY  354 (435)
T ss_dssp             EE-ETTSCEEEEETTTCC--EEEEEC-CCSSCEEEEEC--CSSEEEEEET
T ss_pred             EE-eCCCeEEEEECCCCC--EEEEEe-CCcCcEEEEEe--cCCEEEEEeC
Confidence            44 456678888886432  112222 22222344555  5655555443

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=97.57  E-value=0.007  Score=54.76  Aligned_cols=136  Identities=10%  Similarity=0.029  Sum_probs=75.2

Q ss_pred             CCeEEEEe--CCceEEEEecCCCcccCeEEcCCCC-EEEEeCC-----CcEEEEc-CCC-cEEEeeecCCcccccccceE
Q 017371           98 DGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA-----NGLHKVS-EDG-VENFLSYVNGSKLRFANDVV  167 (372)
Q Consensus        98 ~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~-l~v~~~~-----~gv~~~~-~~g-~~~l~~~~~~~~~~~~~~l~  167 (372)
                      .+.|+.++  +++.+.+    .... .+++.|||+ |+++...     ..|+.++ .+| ...+... +    . +..++
T Consensus        42 ~~~l~~~d~~~~~~~~l----~~~~-~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-~----~-~~~~~  110 (347)
T 2gop_A           42 ENTIVIENLKNNARRFI----ENAT-MPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA-K----N-IRSLE  110 (347)
T ss_dssp             EEEEEEEETTTCCEEEE----ESCE-EEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-S----E-EEEEE
T ss_pred             cceEEEEeCCCCceEEc----ccCC-CeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC-C----C-cccee
Confidence            45678888  4555544    3445 788999996 4433321     1378888 555 4443222 1    1 56788


Q ss_pred             EccCCc-EEEEeCCCC----CC-Ccc--cccc--cccccCCCeEEEEeCCCCeE-EEEeCCccCcceEEEecCCCEEEEE
Q 017371          168 EASDGS-LYFTVSSSK----YL-PHE--YCLD--ILEGKPHGQLLKYDPSSNIT-TLVADGFYFANGVALSRDEDYVVVC  236 (372)
Q Consensus       168 ~d~dG~-i~vtd~~~~----~~-~~~--~~~~--~~~~~~~g~v~~~d~~t~~~-~~~~~~~~~~~gi~~~~dg~~l~v~  236 (372)
                      +.+||+ |+++.....    +. ...  +..+  -........|+.+|.++++. +.+.. - ....++++||| .++.+
T Consensus       111 wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~  187 (347)
T 2gop_A          111 WNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNV  187 (347)
T ss_dssp             ECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEE
T ss_pred             ECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEE
Confidence            999995 666531100    00 000  0000  00001245799999988887 55443 2 56678999999 66666


Q ss_pred             eCC--------CCeEEEEE
Q 017371          237 ESW--------KFRCRKYW  247 (372)
Q Consensus       237 ~~~--------~~~i~~~~  247 (372)
                      ...        ...|+.++
T Consensus       188 ~~~~~~~~~~~~~~l~~~d  206 (347)
T 2gop_A          188 PHREIIPQYFKFWDIYIWE  206 (347)
T ss_dssp             ECCCSSCCSSCCEEEEEEE
T ss_pred             ecccccccccccccEEEeC
Confidence            432        33677777

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.57  E-value=0.0084  Score=55.08  Aligned_cols=160  Identities=10%  Similarity=0.021  Sum_probs=90.1

Q ss_pred             cCCeEEEEe--CCceEEEEecCCCcccCeEEcC-CCC-EEEEeCC------CcEEEEc-CCC-cEEEeeecCCccccccc
Q 017371           97 RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTK-EGH-LIICDNA------NGLHKVS-EDG-VENFLSYVNGSKLRFAN  164 (372)
Q Consensus        97 ~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~-dG~-l~v~~~~------~gv~~~~-~~g-~~~l~~~~~~~~~~~~~  164 (372)
                      ....|+.++  +++.+.+........ .+.+.+ +|+ |+++...      ..|+.++ ..+ .+.+...   .....+.
T Consensus       166 ~~~~l~~~d~~~g~~~~~~~~~~~~~-~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~---~~~~~~~  241 (396)
T 3c5m_A          166 PTCRLIKVDIETGELEVIHQDTAWLG-HPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEH---AEGESCT  241 (396)
T ss_dssp             CCEEEEEEETTTCCEEEEEEESSCEE-EEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCC---CTTEEEE
T ss_pred             CcceEEEEECCCCcEEeeccCCcccc-cceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeecc---CCCcccc
Confidence            345688888  566655544334445 778888 675 5544322      2478888 334 4443221   1112455


Q ss_pred             ceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEec-CCCEEEEEeC----
Q 017371          165 DVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSR-DEDYVVVCES----  238 (372)
Q Consensus       165 ~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~-dg~~l~v~~~----  238 (372)
                      .+++.+||+ |+++...             .+...+.|+.+|.++++.+.+... ...+ +++++ ||+.++++..    
T Consensus       242 ~~~~spdg~~l~~~~~~-------------~~~~~~~l~~~d~~~g~~~~l~~~-~~~~-~~~s~~dg~~l~~~~~~~p~  306 (396)
T 3c5m_A          242 HEFWIPDGSAMAYVSYF-------------KGQTDRVIYKANPETLENEEVMVM-PPCS-HLMSNFDGSLMVGDGCDAPV  306 (396)
T ss_dssp             EEEECTTSSCEEEEEEE-------------TTTCCEEEEEECTTTCCEEEEEEC-CSEE-EEEECSSSSEEEEEECCC--
T ss_pred             ceEECCCCCEEEEEecC-------------CCCccceEEEEECCCCCeEEeeeC-CCCC-CCccCCCCceEEEecCCcce
Confidence            678999996 5554210             011224599999988876665421 1122 78999 9996655431    


Q ss_pred             -----------CCCeEEEEEccCCCCcceeeeccCCCC----------CCceeEEcCCCCE
Q 017371          239 -----------WKFRCRKYWLKGERKGKLETFAENLPG----------APDNINLAPDGTF  278 (372)
Q Consensus       239 -----------~~~~i~~~~~~g~~~~~~~~~~~~~~g----------~p~~i~~d~~G~l  278 (372)
                                 +...|+.+++++.+..   .+......          ....+.+++||+.
T Consensus       307 ~~~~~~~~~~~~~~~i~~~d~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~  364 (396)
T 3c5m_A          307 DVADADSYNIENDPFLYVLNTKAKSAQ---KLCKHSTSWDVLDGDRQITHPHPSFTPNDDG  364 (396)
T ss_dssp             --------CCCCCCEEEEEETTTTBCC---EEEECCCCCCCBTTBSSTTCCCCEECTTSSE
T ss_pred             eeccccccccCCCCcEEEEecccCceE---EccCCCCccccccccccCCCCCceEccCCCe
Confidence                       3467999998765432   22211110          1345678888863

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=97.54  E-value=0.018  Score=53.89  Aligned_cols=149  Identities=11%  Similarity=0.067  Sum_probs=85.9

Q ss_pred             CCccEEEcCCCc-EEEEecCCeEEEEe-----CCceEEE---------Ee----cCCCcccCeE--EcCCCCEEEEeCC-
Q 017371           80 HPEDASMDKNGV-IYTATRDGWIKRLQ-----DGTWVNW---------KF----IDSQTLVGLT--STKEGHLIICDNA-  137 (372)
Q Consensus        80 ~p~~i~~d~~G~-l~v~~~~g~i~~~~-----~g~~~~~---------~~----~~~~p~~gl~--~d~dG~l~v~~~~-  137 (372)
                      ...++++.+++. |+++..+|.|..|+     .++....         ..    ...... .+.  +.+++.++++... 
T Consensus       113 ~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d  191 (437)
T 3gre_A          113 TVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAV-RMRAFVNEEKSLLVALTNL  191 (437)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEE-EEEEEECSSCEEEEEEETT
T ss_pred             CEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCce-EEEEEEcCCCCEEEEEeCC
Confidence            466788988775 55666899888886     2222111         10    111222 333  4467766555444 


Q ss_pred             CcEEEEc-CCC--cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEE
Q 017371          138 NGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV  214 (372)
Q Consensus       138 ~gv~~~~-~~g--~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~  214 (372)
                      ..+..+| .++  ...+...   .....+..++++++|+..++-.                 .++.|..+|..+++....
T Consensus       192 ~~i~iwd~~~~~~~~~~~~~---~h~~~v~~~~~s~~~~~l~s~~-----------------~dg~i~iwd~~~~~~~~~  251 (437)
T 3gre_A          192 SRVIIFDIRTLERLQIIENS---PRHGAVSSICIDEECCVLILGT-----------------TRGIIDIWDIRFNVLIRS  251 (437)
T ss_dssp             SEEEEEETTTCCEEEEEECC---GGGCCEEEEEECTTSCEEEEEE-----------------TTSCEEEEETTTTEEEEE
T ss_pred             CeEEEEeCCCCeeeEEEccC---CCCCceEEEEECCCCCEEEEEc-----------------CCCeEEEEEcCCccEEEE
Confidence            4577777 555  3333221   0123567899999998777532                 467899999887765443


Q ss_pred             eC--CccCcceEEEe----cCCCEEEEEeCCCCeEEEEEccC
Q 017371          215 AD--GFYFANGVALS----RDEDYVVVCESWKFRCRKYWLKG  250 (372)
Q Consensus       215 ~~--~~~~~~gi~~~----~dg~~l~v~~~~~~~i~~~~~~g  250 (372)
                      ..  .......++++    +++. ++++.+.++.|..+++..
T Consensus       252 ~~~~~~~~v~~~~~~~~~s~~~~-~l~s~~~dg~i~iwd~~~  292 (437)
T 3gre_A          252 WSFGDHAPITHVEVCQFYGKNSV-IVVGGSSKTFLTIWNFVK  292 (437)
T ss_dssp             EBCTTCEEEEEEEECTTTCTTEE-EEEEESTTEEEEEEETTT
T ss_pred             EecCCCCceEEEEeccccCCCcc-EEEEEcCCCcEEEEEcCC
Confidence            32  22223456444    4554 555555566788888764

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=97.54  E-value=0.034  Score=50.17  Aligned_cols=143  Identities=12%  Similarity=0.053  Sum_probs=76.1

Q ss_pred             CeEEcCCCCEEEEeCCCcEEEEc-CCC-cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCC
Q 017371          122 GLTSTKEGHLIICDNANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHG  199 (372)
Q Consensus       122 gl~~d~dG~l~v~~~~~gv~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g  199 (372)
                      .++++++ .|..+..+..+..++ ..+ .+.+.....+.....+..+++.++|++.++-+                 .++
T Consensus        19 ~~~~s~~-~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s-----------------~D~   80 (330)
T 2hes_X           19 SFDFSQG-ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGS-----------------FDS   80 (330)
T ss_dssp             EEEEETT-EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEE-----------------TTS
T ss_pred             eeccCCC-EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEe-----------------CCC
Confidence            6777765 333334444466666 443 33222111111123567899999998777532                 456


Q ss_pred             eEEEEeCCC-------CeEEEEeCC-ccCcceEEEecCCCEEEEEeCCCCeEEEEEccCC-CCcc-eeeeccCCCCCCce
Q 017371          200 QLLKYDPSS-------NITTLVADG-FYFANGVALSRDEDYVVVCESWKFRCRKYWLKGE-RKGK-LETFAENLPGAPDN  269 (372)
Q Consensus       200 ~v~~~d~~t-------~~~~~~~~~-~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~-~~~~-~~~~~~~~~g~p~~  269 (372)
                      .|..+|..+       .+......+ -.....++|+|++++|..+ +.+..|..+++... ...+ ...+. ........
T Consensus        81 ~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~-s~D~~v~iwd~~~~~~~~~~~~~~~-~h~~~v~~  158 (330)
T 2hes_X           81 TVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATC-SRDKSVWIWETDESGEEYECISVLQ-EHSQDVKH  158 (330)
T ss_dssp             CEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEE-ETTSCEEEEECCTTCCCCEEEEEEC-CCSSCEEE
T ss_pred             cEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEE-eCCCEEEEEeccCCCCCeEEEEEec-cCCCceEE
Confidence            677676532       122222222 2234578999999865554 45667888887421 1111 12222 22233567


Q ss_pred             eEEcCCCCEEEEEec
Q 017371          270 INLAPDGTFWIAIIK  284 (372)
Q Consensus       270 i~~d~~G~lwva~~~  284 (372)
                      +++.++|++.++...
T Consensus       159 v~~~p~~~~l~s~s~  173 (330)
T 2hes_X          159 VIWHPSEALLASSSY  173 (330)
T ss_dssp             EEECSSSSEEEEEET
T ss_pred             EEECCCCCEEEEEcC
Confidence            888999987776654

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=97.51  E-value=0.044  Score=48.38  Aligned_cols=230  Identities=10%  Similarity=-0.037  Sum_probs=118.3

Q ss_pred             CccEEEcCCCc-EEEEecCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCCEEEEeCCCcEEE-Ec-CCCcEEEeeec
Q 017371           81 PEDASMDKNGV-IYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHK-VS-EDGVENFLSYV  155 (372)
Q Consensus        81 p~~i~~d~~G~-l~v~~~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~-~~-~~g~~~l~~~~  155 (372)
                      ..++++.++|. |..|..+|.|..++  +++.......... . -..+..++.+.++....+..+ ++ ..+...+... 
T Consensus        70 V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~-~-~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~-  146 (318)
T 4ggc_A           70 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSA-R-VGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATL-  146 (318)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSS-C-EEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEE-
T ss_pred             EEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccc-e-EEEeecCCCEEEEEecCCceEeeecCCCceeEEEE-
Confidence            46789999885 45566899999998  5543322221111 1 223344566555544445444 33 3331111111 


Q ss_pred             CCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEE-----EEeCCccCcceEEEecCC
Q 017371          156 NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT-----LVADGFYFANGVALSRDE  230 (372)
Q Consensus       156 ~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~-----~~~~~~~~~~gi~~~~dg  230 (372)
                      .+. ......+.+.++|+..++-.                 .++.|..+|..+++..     ...........+++.+++
T Consensus       147 ~~~-~~~~~~~~~~~~~~~l~s~~-----------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  208 (318)
T 4ggc_A          147 SGH-SQEVCGLRWAPDGRHLASGG-----------------NDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ  208 (318)
T ss_dssp             ECC-SSCEEEEEECTTSSEEEEEE-----------------TTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTS
T ss_pred             cCc-cCceEEEEEcCCCCEEEEEe-----------------cCcceeEEECCCCcccccceeeecccCCceEEEEecCCC
Confidence            110 12345677788888766532                 4567887887654321     111111122456677766


Q ss_pred             CEEEE-Ee-CCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCc
Q 017371          231 DYVVV-CE-SWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPK  308 (372)
Q Consensus       231 ~~l~v-~~-~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~  308 (372)
                      ..++. +. .....|..++.....  ......  .......+...++++..++..+.                       
T Consensus       209 ~~~~~~~~~~~~~~i~lwd~~~~~--~~~~~~--~~~~v~~~~~~~~~~~~~~~sg~-----------------------  261 (318)
T 4ggc_A          209 SNVLATGGGTSDRHIRIWNVCSGA--CLSAVD--AHSQVCSILWSPHYKELISGHGF-----------------------  261 (318)
T ss_dssp             TTEEEEEECTTTCEEEEEETTTCC--EEEEEE--CSSCEEEEEEETTTTEEEEEECT-----------------------
T ss_pred             CcEEEEEecCCCCEEEEEeccccc--cccccc--ceeeeeeeeecccccceEEEEEc-----------------------
Confidence            54443 32 333445555543321  111111  12224556677777655544321                       


Q ss_pred             cccccccCCCceEEEEEC-CCCcEEEEEECCCCCeeccceeeEEE-CCEEEEEeCCCCeEEEEeC
Q 017371          309 LFSQFITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL  371 (372)
Q Consensus       309 ~~~~~~~~~~~~~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~L~igs~~~~~i~~~~~  371 (372)
                               ..+.|..+| .+++.+..+....+    .++++... ++++.+..-....|.+.++
T Consensus       262 ---------~d~~i~iwd~~~~~~~~~l~gH~~----~V~~l~~spdg~~l~S~s~D~~v~iWd~  313 (318)
T 4ggc_A          262 ---------AQNQLVIWKYPTMAKVAELKGHTS----RVLSLTMSPDGATVASAAADETLRLWRC  313 (318)
T ss_dssp             ---------TTCCEEEEETTTCCEEEEECCCSS----CEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred             ---------CCCEEEEEECCCCcEEEEEcCCCC----CEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence                     134566666 46888888764333    57888876 4544444445567777765

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=97.50  E-value=0.028  Score=56.99  Aligned_cols=183  Identities=12%  Similarity=0.066  Sum_probs=95.2

Q ss_pred             cEEEcCCCc-EEEE-ecCC----eEEEEe--CCceEEEEecCCCcccCeEEcCCCCEEEEeCCC--------------cE
Q 017371           83 DASMDKNGV-IYTA-TRDG----WIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNAN--------------GL  140 (372)
Q Consensus        83 ~i~~d~~G~-l~v~-~~~g----~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~--------------gv  140 (372)
                      ++++.+||+ |.++ +.+|    .|+.++  +|+............ ++++.+|..|+++....              .|
T Consensus       167 ~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~-~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v  245 (741)
T 1yr2_A          167 AWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFS-GLAWLGNDALLYSRFAEPKEGQAFQALNYNQTV  245 (741)
T ss_dssp             EEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESC-CCEESTTSEEEEEECCCC--------CCCCCEE
T ss_pred             eEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceec-cEEEECCCEEEEEEecCcccccccccCCCCCEE
Confidence            467778885 3333 3333    478888  555433211111124 78898884466664322              26


Q ss_pred             EEEc-CCC-c-EEEeeecCCcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCC--e-EEE
Q 017371          141 HKVS-EDG-V-ENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN--I-TTL  213 (372)
Q Consensus       141 ~~~~-~~g-~-~~l~~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~--~-~~~  213 (372)
                      ++++ .++ . ..+.......+ .+..++.+++||+ |.++...             .......|+.+|.+++  + .+.
T Consensus       246 ~~~~lgt~~~~~~lv~~~~~~~-~~~~~~~~SpDG~~l~~~~~~-------------~~~~~~~l~~~d~~~~~~~~~~~  311 (741)
T 1yr2_A          246 WLHRLGTPQSADQPVFATPELP-KRGHGASVSSDGRWVVITSSE-------------GTDPVNTVHVARVTNGKIGPVTA  311 (741)
T ss_dssp             EEEETTSCGGGCEEEECCTTCT-TCEEEEEECTTSCEEEEEEEC-------------TTCSCCEEEEEEEETTEECCCEE
T ss_pred             EEEECCCCchhCEEEeccCCCC-eEEEEEEECCCCCEEEEEEEc-------------cCCCcceEEEEECCCCCCcccEE
Confidence            6666 334 2 22222211111 1345778899996 4443211             0012457999988766  5 555


Q ss_pred             EeCCccCcceEEEecCCCEEEEEeCC---CCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEe
Q 017371          214 VADGFYFANGVALSRDEDYVVVCESW---KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII  283 (372)
Q Consensus       214 ~~~~~~~~~gi~~~~dg~~l~v~~~~---~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~  283 (372)
                      +.......... +++||+.+|+....   +.+|+++++++.. .....+.........++..+ ++.++++..
T Consensus       312 l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~-~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~  381 (741)
T 1yr2_A          312 LIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGST-PRFDTVVPESKDNLESVGIA-GNRLFASYI  381 (741)
T ss_dssp             EECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSS-CEEEEEECCCSSEEEEEEEE-BTEEEEEEE
T ss_pred             ecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCc-cccEEEecCCCCeEEEEEEE-CCEEEEEEE
Confidence            55433222222 46899988887542   4679999987632 23333332222223345555 455555544

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=97.50  E-value=0.0069  Score=61.70  Aligned_cols=183  Identities=12%  Similarity=0.130  Sum_probs=101.5

Q ss_pred             CCCccEEEcCC--C-cEEEEecCCeEEEEe--CCceEEEE---ecCCCcccCeEEcCC--CCEEEEeCC-CcEEEEc-CC
Q 017371           79 NHPEDASMDKN--G-VIYTATRDGWIKRLQ--DGTWVNWK---FIDSQTLVGLTSTKE--GHLIICDNA-NGLHKVS-ED  146 (372)
Q Consensus        79 ~~p~~i~~d~~--G-~l~v~~~~g~i~~~~--~g~~~~~~---~~~~~p~~gl~~d~d--G~l~v~~~~-~gv~~~~-~~  146 (372)
                      ....++++.++  | .|.++..+|.|..|+  +++.....   ....... .+++.++  |+++++... ..+..++ .+
T Consensus        54 ~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~-~v~~sp~~~~~~l~sgs~dg~I~vwdl~~  132 (753)
T 3jro_A           54 GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVN-SVQWAPHEYGPLLLVASSDGKVSVVEFKE  132 (753)
T ss_dssp             SCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEE-EEEECCGGGCSEEEEEETTSEEEEEECCS
T ss_pred             CceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeE-EEEECCCCCCCEEEEEeCCCcEEEEEeec
Confidence            34567888765  6 466667899999998  55432222   2223445 8999998  876665444 4466666 43


Q ss_pred             C--cEEEeeecCCcccccccceEEcc-------------CCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCC--
Q 017371          147 G--VENFLSYVNGSKLRFANDVVEAS-------------DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN--  209 (372)
Q Consensus       147 g--~~~l~~~~~~~~~~~~~~l~~d~-------------dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~--  209 (372)
                      +  .......  +. ...+..+++.+             +|.+.++-                 ..+|.|..+|..++  
T Consensus       133 ~~~~~~~~~~--~~-~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sg-----------------s~dg~I~iwd~~~~~~  192 (753)
T 3jro_A          133 NGTTSPIIID--AH-AIGVNSASWAPATIEEDGEHNGTKESRKFVTG-----------------GADNLVKIWKYNSDAQ  192 (753)
T ss_dssp             SSCCCCEEEE--CC-SSCEEEEEECCCC---------CGGGCCEEEE-----------------ETTSCEEEEEEETTTT
T ss_pred             CCCcceeEee--cC-CCceEEEEecCcccccccccccCCCCCEEEEE-----------------ECCCeEEEEeccCCcc
Confidence            3  2111111  10 12455677777             46555542                 24566777775544  


Q ss_pred             --eEEEEeCC-ccCcceEEEecC---CCEEEEEeCCCCeEEEEEccCCCCcceeeecc--CCCCCCceeEEcCCCCEEEE
Q 017371          210 --ITTLVADG-FYFANGVALSRD---EDYVVVCESWKFRCRKYWLKGERKGKLETFAE--NLPGAPDNINLAPDGTFWIA  281 (372)
Q Consensus       210 --~~~~~~~~-~~~~~gi~~~~d---g~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~--~~~g~p~~i~~d~~G~lwva  281 (372)
                        .......+ -.....++++|+   ++ ++++...++.|..+++.............  ...+....++++++|++.++
T Consensus       193 ~~~~~~~~~~h~~~V~~l~~sp~~~~~~-~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s  271 (753)
T 3jro_A          193 TYVLESTLEGHSDWVRDVAWSPTVLLRS-YLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLAL  271 (753)
T ss_dssp             EEEEEEEECCCSSCEEEEEECCCCSSSE-EEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEE
T ss_pred             cceeeeeecCCCCcEEEEEeccCCCCCC-EEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEE
Confidence              22222222 233467899999   66 44555556678888886532111111111  12334567889999976555


Q ss_pred             Ee
Q 017371          282 II  283 (372)
Q Consensus       282 ~~  283 (372)
                      ..
T Consensus       272 ~s  273 (753)
T 3jro_A          272 SG  273 (753)
T ss_dssp             EC
T ss_pred             Ec
Confidence            43

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=97.45  E-value=0.023  Score=57.25  Aligned_cols=104  Identities=11%  Similarity=-0.017  Sum_probs=61.8

Q ss_pred             ccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCCC-
Q 017371          163 ANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK-  240 (372)
Q Consensus       163 ~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~-  240 (372)
                      ..++++.|||+ |.++...             .+.....|+.+|.++++............+++|+|||+.|+++.... 
T Consensus       127 ~~~~~~SPDg~~la~~~~~-------------~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~  193 (710)
T 2xdw_A          127 LRGYAFSEDGEYFAYGLSA-------------SGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQ  193 (710)
T ss_dssp             EEEEEECTTSSEEEEEEEE-------------TTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCC
T ss_pred             EEEEEECCCCCEEEEEEcC-------------CCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCc
Confidence            45678889996 3333210             01122379999999888765322112245799999999898876432 


Q ss_pred             --------------CeEEEEEccCCCCcceeeeccC-CCCCCceeEEcCCCCEE
Q 017371          241 --------------FRCRKYWLKGERKGKLETFAEN-LPGAPDNINLAPDGTFW  279 (372)
Q Consensus       241 --------------~~i~~~~~~g~~~~~~~~~~~~-~~g~p~~i~~d~~G~lw  279 (372)
                                    ..|+++++.+........+... .+.+..++.+++||+..
T Consensus       194 ~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l  247 (710)
T 2xdw_A          194 DGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYV  247 (710)
T ss_dssp             SSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEE
T ss_pred             cccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEE
Confidence                          3488888865432222233221 12334578899999733

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.44  E-value=0.023  Score=57.30  Aligned_cols=112  Identities=15%  Similarity=0.249  Sum_probs=66.7

Q ss_pred             CCcEEEEecCCeEEEEe--CCceEEEEecCCC------------cccCeEEcCCCCEEEEeCCCcEEEEc-CCCcEEEee
Q 017371           89 NGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQ------------TLVGLTSTKEGHLIICDNANGLHKVS-EDGVENFLS  153 (372)
Q Consensus        89 ~G~l~v~~~~g~i~~~~--~g~~~~~~~~~~~------------p~~gl~~d~dG~l~v~~~~~gv~~~~-~~g~~~l~~  153 (372)
                      +|.||+++.++.|+.+|  +|+.. |......            ...+++++ +|.||++.....|+.+| .+|......
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~-W~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~v~v~~~dg~l~AlDa~TG~~~W~~  147 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLI-WKYDPQSDRHRAGEACCDAVNRGVAVW-KGKVYVGVLDGRLEAIDAKTGQRAWSV  147 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEE-EEECCCCCGGGGGGCTTCSCCCCCEEE-TTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCcee-EEEcCCCCccccccccccCCCCccEEE-CCEEEEEccCCEEEEEECCCCCEeeee
Confidence            68999999889999999  67644 3321111            11145664 68899987666799999 788322222


Q ss_pred             ecC-Cc-c-cccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEe
Q 017371          154 YVN-GS-K-LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA  215 (372)
Q Consensus       154 ~~~-~~-~-~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~  215 (372)
                      ... .. . ......-.+ .+|.+|++.....            ....+.|+.+|.+||+..+..
T Consensus       148 ~~~~~~~~~~~~~~sP~v-~~g~v~vg~~~~~------------~~~~g~v~a~D~~tG~~~W~~  199 (689)
T 1yiq_A          148 DTRADHKRSYTITGAPRV-VNGKVVIGNGGAE------------FGVRGYVTAYDAETGKEAWRF  199 (689)
T ss_dssp             ECCSCTTSCCBCCSCCEE-ETTEEEECCBCTT------------TCCBCEEEEEETTTCCEEEEE
T ss_pred             cCcCCCCCCccccCCcEE-ECCEEEEEeCCCc------------cCCCCEEEEEECCCCcEEEEe
Confidence            211 10 0 000111122 3688888643211            114678999999999876643

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=97.44  E-value=0.0031  Score=61.64  Aligned_cols=134  Identities=11%  Similarity=0.058  Sum_probs=86.9

Q ss_pred             CccEEEcCCC-cEEEEecCCeEEEEe--CCc--------eEEEEecC----CCcccCeEEcCCCCEEEEeCCCcEEEEc-
Q 017371           81 PEDASMDKNG-VIYTATRDGWIKRLQ--DGT--------WVNWKFID----SQTLVGLTSTKEGHLIICDNANGLHKVS-  144 (372)
Q Consensus        81 p~~i~~d~~G-~l~v~~~~g~i~~~~--~g~--------~~~~~~~~----~~p~~gl~~d~dG~l~v~~~~~gv~~~~-  144 (372)
                      -+++++.++| .|++|+.+|.|..|+  ++.        +..+....    +... .+++.||| +..+..++.+..++ 
T Consensus       132 v~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~-sVawSPdg-Laass~D~tVrlWd~  209 (588)
T 2j04_A          132 YHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVT-HIVWYEDV-LVAALSNNSVFSMTV  209 (588)
T ss_dssp             EEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEE-EEEEETTE-EEEEETTCCEEEECC
T ss_pred             EEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEE-EEEEcCCc-EEEEeCCCeEEEEEC
Confidence            5679999999 677888999999999  443        23332111    2456 89999999 77777677899998 


Q ss_pred             CCC-cE-EEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCC-ccCc
Q 017371          145 EDG-VE-NFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFA  221 (372)
Q Consensus       145 ~~g-~~-~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~-~~~~  221 (372)
                      .++ .. ....-..+. ...+.++++.  |+..++.                  ..+.|..+|..+++...+..+ ...-
T Consensus       210 ~~~~~~~~~~tL~~~h-~~~V~svaFs--g~~LASa------------------~~~tIkLWd~~~~~~~~~~~gh~~~V  268 (588)
T 2j04_A          210 SASSHQPVSRMIQNAS-RRKITDLKIV--DYKVVLT------------------CPGYVHKIDLKNYSISSLKTGSLENF  268 (588)
T ss_dssp             CSSSSCCCEEEEECCC-SSCCCCEEEE--TTEEEEE------------------CSSEEEEEETTTTEEEEEECSCCSCC
T ss_pred             CCCccccceeeecccc-cCcEEEEEEE--CCEEEEE------------------eCCeEEEEECCCCeEEEEEcCCCceE
Confidence            333 21 111100111 1357788887  4544432                  247899999987877555533 3345


Q ss_pred             ceEEE--ecCCCEEEEEe
Q 017371          222 NGVAL--SRDEDYVVVCE  237 (372)
Q Consensus       222 ~gi~~--~~dg~~l~v~~  237 (372)
                      .++++  ++|+..+.++.
T Consensus       269 ~~va~~~s~d~~~La~a~  286 (588)
T 2j04_A          269 HIIPLNHEKESTILLMSN  286 (588)
T ss_dssp             CEEEETTCSSCEEEEECS
T ss_pred             EEEEeeeCCCCCEEEEEc
Confidence            67899  99997665554

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=97.43  E-value=0.014  Score=58.79  Aligned_cols=183  Identities=9%  Similarity=0.077  Sum_probs=96.3

Q ss_pred             ccEEEcCCCcEE--EEecC----CeEEEEe--CCceEEEEecCCC-cccCeEEcCCCC-EEEEeCCCc------------
Q 017371           82 EDASMDKNGVIY--TATRD----GWIKRLQ--DGTWVNWKFIDSQ-TLVGLTSTKEGH-LIICDNANG------------  139 (372)
Q Consensus        82 ~~i~~d~~G~l~--v~~~~----g~i~~~~--~g~~~~~~~~~~~-p~~gl~~d~dG~-l~v~~~~~g------------  139 (372)
                      .++++.+||+..  ..+..    ..|+.++  +|+........+. .. ++++.+||+ |+.+.....            
T Consensus       124 ~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~-~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~  202 (695)
T 2bkl_A          124 GTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYA-TPKWTPDSKGFYYEWLPTDPSIKVDERPGYT  202 (695)
T ss_dssp             EEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTC-CCEECTTSSEEEEEECCCCTTSCGGGGGGGC
T ss_pred             EEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCccccc-ceEEecCCCEEEEEEecCCCCCccccCCCCC
Confidence            356778888533  33323    4688888  5554300011111 14 889999997 444443222            


Q ss_pred             -EEEEc-CCC-c-EEEeeecCCcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEE
Q 017371          140 -LHKVS-EDG-V-ENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV  214 (372)
Q Consensus       140 -v~~~~-~~g-~-~~l~~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~  214 (372)
                       |++++ .++ . ..+........ ....++.+++||+ |.++...              ......|+.+|..+++.+.+
T Consensus       203 ~v~~~~l~t~~~~~~lv~~~~~~~-~~~~~~~~SpDG~~l~~~~~~--------------~~~~~~l~~~~~~~~~~~~l  267 (695)
T 2bkl_A          203 TIRYHTLGTEPSKDTVVHERTGDP-TTFLQSDLSRDGKYLFVYILR--------------GWSENDVYWKRPGEKDFRLL  267 (695)
T ss_dssp             EEEEEETTSCGGGCEEEECCCCCT-TCEEEEEECTTSCCEEEEEEE--------------TTTEEEEEEECTTCSSCEEE
T ss_pred             EEEEEECCCCchhceEEEecCCCC-EEEEEEEECCCCCEEEEEEeC--------------CCCceEEEEEcCCCCceEEe
Confidence             88887 444 2 22222211111 2344778999996 4443211              00234788888766776666


Q ss_pred             eCCccCcceEEEecCCCEEEEEeC---CCCeEEEEEccCCCCcceeeeccCC-CCCCceeEEcCCCCEEEEEe
Q 017371          215 ADGFYFANGVALSRDEDYVVVCES---WKFRCRKYWLKGERKGKLETFAENL-PGAPDNINLAPDGTFWIAII  283 (372)
Q Consensus       215 ~~~~~~~~gi~~~~dg~~l~v~~~---~~~~i~~~~~~g~~~~~~~~~~~~~-~g~p~~i~~d~~G~lwva~~  283 (372)
                      ...........+ ++|+ +|+...   .+.+|+++++++........+.... .....++.++ ++.++++..
T Consensus       268 ~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~  337 (695)
T 2bkl_A          268 VKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYL  337 (695)
T ss_dssp             EECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEE
T ss_pred             ecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEE
Confidence            544333333333 7887 777654   3578999998764322223333221 1123456666 566666554

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=97.40  E-value=0.075  Score=48.48  Aligned_cols=30  Identities=3%  Similarity=0.018  Sum_probs=22.3

Q ss_pred             CCcccCeEEcCCCCEEEEeCCCcEEEEc-CCC
Q 017371          117 SQTLVGLTSTKEGHLIICDNANGLHKVS-EDG  147 (372)
Q Consensus       117 ~~p~~gl~~d~dG~l~v~~~~~gv~~~~-~~g  147 (372)
                      +... .+++.+||+++++....|+..++ ..+
T Consensus        20 ~~V~-~v~fs~dg~~la~g~~~~~~iw~~~~~   50 (355)
T 3vu4_A           20 NPVT-DYEFNQDQSCLILSTLKSFEIYNVHPV   50 (355)
T ss_dssp             CCCC-EEEECTTSSEEEEECSSEEEEEEETTE
T ss_pred             CceE-EEEECCCCCEEEEEcCCEEEEEecCCc
Confidence            3445 89999999988777667877777 444

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.38  E-value=0.092  Score=49.16  Aligned_cols=214  Identities=13%  Similarity=0.055  Sum_probs=113.9

Q ss_pred             cEEEcCCCcEEEEecCCeEEEEe--CCceEEEEec-CCCcccCeEEcCCCCEEEE-eCCCcEEEEc-CCC--cEEEeeec
Q 017371           83 DASMDKNGVIYTATRDGWIKRLQ--DGTWVNWKFI-DSQTLVGLTSTKEGHLIIC-DNANGLHKVS-EDG--VENFLSYV  155 (372)
Q Consensus        83 ~i~~d~~G~l~v~~~~g~i~~~~--~g~~~~~~~~-~~~p~~gl~~d~dG~l~v~-~~~~gv~~~~-~~g--~~~l~~~~  155 (372)
                      ++.+| +..+.++..+|.|..++  +++....... .+... .+++  +++++++ ..+..+..++ .++  ...+... 
T Consensus       138 ~~~~d-~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~-~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h-  212 (435)
T 1p22_A          138 CLQYD-DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVL-CLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHH-  212 (435)
T ss_dssp             EEECC-SSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEE-EEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCC-
T ss_pred             EEEEC-CCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEE-EEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCC-
Confidence            44443 23566777899999999  5554333222 22334 6666  5655554 4444577788 566  3333211 


Q ss_pred             CCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEE---EEeCCc-cCcceEEEecCCC
Q 017371          156 NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT---LVADGF-YFANGVALSRDED  231 (372)
Q Consensus       156 ~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~---~~~~~~-~~~~gi~~~~dg~  231 (372)
                          ...+..++++  +...++                 +..++.|..+|..+++..   ....+. .....+++  +++
T Consensus       213 ----~~~v~~l~~~--~~~l~s-----------------~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~  267 (435)
T 1p22_A          213 ----CEAVLHLRFN--NGMMVT-----------------CSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDK  267 (435)
T ss_dssp             ----CSCEEEEECC--TTEEEE-----------------EETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETT
T ss_pred             ----CCcEEEEEEc--CCEEEE-----------------eeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCC
Confidence                1234455554  233333                 224677888887655432   222222 12234444  677


Q ss_pred             EEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCcccc
Q 017371          232 YVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFS  311 (372)
Q Consensus       232 ~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~  311 (372)
                      .++.+. .++.|..+++...+  ....+. ...+....+..  +|++.++...                           
T Consensus       268 ~l~s~~-~dg~i~vwd~~~~~--~~~~~~-~~~~~v~~~~~--~~~~l~~g~~---------------------------  314 (435)
T 1p22_A          268 YIVSAS-GDRTIKVWNTSTCE--FVRTLN-GHKRGIACLQY--RDRLVVSGSS---------------------------  314 (435)
T ss_dssp             EEEEEE-TTSEEEEEETTTCC--EEEEEE-CCSSCEEEEEE--ETTEEEEEET---------------------------
T ss_pred             EEEEEe-CCCeEEEEECCcCc--EEEEEc-CCCCcEEEEEe--CCCEEEEEeC---------------------------
Confidence            565554 56678888876532  112222 12222334444  4555555544                           


Q ss_pred             ccccCCCceEEEEECC-CCcEEEEEECCCCCeeccceeeEEECCEEEEEeCCCCeEEEEeC
Q 017371          312 QFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL  371 (372)
Q Consensus       312 ~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~igs~~~~~i~~~~~  371 (372)
                             .+.|..+|. +|+.+..+....+    .++++..++..|..|+.. ..|.++++
T Consensus       315 -------dg~i~iwd~~~~~~~~~~~~h~~----~v~~~~~~~~~l~sg~~d-g~i~vwd~  363 (435)
T 1p22_A          315 -------DNTIRLWDIECGACLRVLEGHEE----LVRCIRFDNKRIVSGAYD-GKIKVWDL  363 (435)
T ss_dssp             -------TSCEEEEETTTCCEEEEECCCSS----CEEEEECCSSEEEEEETT-SCEEEEEH
T ss_pred             -------CCeEEEEECCCCCEEEEEeCCcC----cEEEEEecCCEEEEEeCC-CcEEEEEC
Confidence                   356777774 4788777764332    466777666777777754 56666653

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=97.37  E-value=0.067  Score=47.31  Aligned_cols=184  Identities=13%  Similarity=0.128  Sum_probs=96.3

Q ss_pred             CCccEEEcC--CCc-EEEEecCCeEEEEe--CCce---EEEEecCCCcccCeEEcCC--CCEEEEeCC-CcEEEEc-CCC
Q 017371           80 HPEDASMDK--NGV-IYTATRDGWIKRLQ--DGTW---VNWKFIDSQTLVGLTSTKE--GHLIICDNA-NGLHKVS-EDG  147 (372)
Q Consensus        80 ~p~~i~~d~--~G~-l~v~~~~g~i~~~~--~g~~---~~~~~~~~~p~~gl~~d~d--G~l~v~~~~-~gv~~~~-~~g  147 (372)
                      ...++++.+  +|. |..+..||.|..|+  +++.   ..+........ .+++.|+  |.++++... ..+..++ .++
T Consensus        55 ~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~-~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~  133 (297)
T 2pm7_B           55 PVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVN-SVQWAPHEYGPMLLVASSDGKVSVVEFKEN  133 (297)
T ss_dssp             CEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEE-EEEECCGGGCSEEEEEETTSEEEEEEBCSS
T ss_pred             CeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCcee-EEEeCcCCCCcEEEEEECCCcEEEEEecCC
Confidence            345677754  364 55666899999998  4432   22222223345 8899886  765555433 4466666 333


Q ss_pred             --cEEEeeecCCcccccccceEEccC-------------CcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCe--
Q 017371          148 --VENFLSYVNGSKLRFANDVVEASD-------------GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI--  210 (372)
Q Consensus       148 --~~~l~~~~~~~~~~~~~~l~~d~d-------------G~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~--  210 (372)
                        ......  .+. ...++.+++.++             ++++++                 +..++.|..+|..+++  
T Consensus       134 ~~~~~~~~--~~h-~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~s-----------------gs~D~~v~lwd~~~~~~~  193 (297)
T 2pm7_B          134 GTTSPIII--DAH-AIGVNSASWAPATIEEDGEHNGTKESRKFVT-----------------GGADNLVKIWKYNSDAQT  193 (297)
T ss_dssp             SCBCCEEE--ECC-SSCEEEEEECCCC------------CCEEEE-----------------EETTSCEEEEEEETTTTE
T ss_pred             Cceeeeee--ecc-cCccceEeecCCcccccccCCCCCCcceEEE-----------------EcCCCcEEEEEEcCCCce
Confidence              211111  110 123456666665             344443                 2245566666654333  


Q ss_pred             --EEEEeCC-ccCcceEEEecCC--CEEEEEeCCCCeEEEEEccCCCCc-ceeeec-cCCCCCCceeEEcCCCCEEEEEe
Q 017371          211 --TTLVADG-FYFANGVALSRDE--DYVVVCESWKFRCRKYWLKGERKG-KLETFA-ENLPGAPDNINLAPDGTFWIAII  283 (372)
Q Consensus       211 --~~~~~~~-~~~~~gi~~~~dg--~~l~v~~~~~~~i~~~~~~g~~~~-~~~~~~-~~~~g~p~~i~~d~~G~lwva~~  283 (372)
                        ......+ -...+.++|+|++  ..++++.+.+..|..++++..... ....+. ....+....+++.++|++.++..
T Consensus       194 ~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~  273 (297)
T 2pm7_B          194 YVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSG  273 (297)
T ss_dssp             EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEE
T ss_pred             EEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEc
Confidence              2222222 2234678999986  346666666777887777643211 111111 11223345678889998766554


Q ss_pred             c
Q 017371          284 K  284 (372)
Q Consensus       284 ~  284 (372)
                      .
T Consensus       274 ~  274 (297)
T 2pm7_B          274 G  274 (297)
T ss_dssp             T
T ss_pred             C
Confidence            4

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=97.36  E-value=0.096  Score=48.83  Aligned_cols=168  Identities=11%  Similarity=0.063  Sum_probs=92.4

Q ss_pred             ccEEEcCCCcEEEEecCCeEEEEe--CCceEEEEec--CC-CcccCeEEcCCCCEEEEeCC-CcEEEEc-CCC--cEEEe
Q 017371           82 EDASMDKNGVIYTATRDGWIKRLQ--DGTWVNWKFI--DS-QTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG--VENFL  152 (372)
Q Consensus        82 ~~i~~d~~G~l~v~~~~g~i~~~~--~g~~~~~~~~--~~-~p~~gl~~d~dG~l~v~~~~-~gv~~~~-~~g--~~~l~  152 (372)
                      ..|+..+++.|-+|. ++.|+.|+  +|+.......  .+ ... ++++.++|+++++... ..|..++ .++  +..+ 
T Consensus       109 ~~l~wS~~n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~-sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~-  185 (420)
T 4gga_A          109 NLVDWSSGNVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYIS-SVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM-  185 (420)
T ss_dssp             BCEEECTTSEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEE-EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE-
T ss_pred             eeEEECCCCEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEE-EEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEE-
Confidence            346777766666664 88999999  6765544332  22 345 9999999986665444 4477777 566  3322 


Q ss_pred             eecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCe--EEEEeCCccCcceEEEecCC
Q 017371          153 SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI--TTLVADGFYFANGVALSRDE  230 (372)
Q Consensus       153 ~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~--~~~~~~~~~~~~gi~~~~dg  230 (372)
                         .+.. ...  .++..++++.++-                 ..++.+..+|.....  +..+........++.+++++
T Consensus       186 ---~~h~-~~v--~~~s~~~~~l~sg-----------------s~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g  242 (420)
T 4gga_A          186 ---TSHS-ARV--GSLSWNSYILSSG-----------------SRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG  242 (420)
T ss_dssp             ---CCCS-SCE--EEEEEETTEEEEE-----------------ETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS
T ss_pred             ---eCCC-Cce--EEEeeCCCEEEEE-----------------eCCCceeEeeecccceeeEEecccccceeeeeecCCC
Confidence               1110 112  2333456655542                 245667777754332  22233333445678899999


Q ss_pred             CEEEEEeCCCCeEEEEEccCCCCcc--eeeeccCCCCCCceeEEcCCCC
Q 017371          231 DYVVVCESWKFRCRKYWLKGERKGK--LETFAENLPGAPDNINLAPDGT  277 (372)
Q Consensus       231 ~~l~v~~~~~~~i~~~~~~g~~~~~--~~~~~~~~~g~p~~i~~d~~G~  277 (372)
                      +.+.... .++.+..++....+...  ..... ...+....++..+++.
T Consensus       243 ~~l~s~~-~D~~v~i~~~~~~~~~~~~~~~~~-~~~~~V~~~~~~p~~~  289 (420)
T 4gga_A          243 RHLASGG-NDNLVNVWPSAPGEGGWVPLQTFT-QHQGAVKAVAWCPWQS  289 (420)
T ss_dssp             SEEEEEE-TTSCEEEEESSCCSSCSCCSEEEC-CCSSCEEEEEECTTCT
T ss_pred             Ceeeeee-ccccceEEeeccccccceeeeeec-ccCCceeeeeeCCCcc
Confidence            8665554 45667777765432211  11111 1222344566666553

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.36  E-value=0.063  Score=52.93  Aligned_cols=111  Identities=15%  Similarity=0.215  Sum_probs=63.7

Q ss_pred             CCcEEEEecCCeEEEEe--CCceEEEEecCCC-----------cccCeEEcCCCCEEEEeCCCcEEEEc-CCCcEEEeee
Q 017371           89 NGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQ-----------TLVGLTSTKEGHLIICDNANGLHKVS-EDGVENFLSY  154 (372)
Q Consensus        89 ~G~l~v~~~~g~i~~~~--~g~~~~~~~~~~~-----------p~~gl~~d~dG~l~v~~~~~gv~~~~-~~g~~~l~~~  154 (372)
                      +|.+|+++..++|+.+|  +|+.. |......           .. ++++. ++++|++.....|+.+| .+|...+...
T Consensus        68 ~g~vyv~~~~~~v~AlD~~tG~~~-W~~~~~~~~~~~~~~~~~~~-g~a~~-~~~v~~~t~dg~l~AlD~~TG~~~W~~~  144 (582)
T 1flg_A           68 DGVIYVTASYSRLFALDAKTGKRL-WTYNHRLPDDIRPCCDVVNR-GAAIY-GDKVFFGTLDASVVALNKNTGKVVWKKK  144 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEE-EEEECCCCTTCCCSSCSCCC-CCEEE-TTEEEEEETTTEEEEEESSSCCEEEEEE
T ss_pred             CCEEEEEcCCCCEEEEECCCCcEE-EEEcCCCCcccccccccCCC-ccEEE-CCEEEEEeCCCEEEEEECCCCCEEeeec
Confidence            68999999756699999  67643 3221111           13 55664 68899987767799999 7883333222


Q ss_pred             cCCccc--ccccceEEcc---CC--cEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEE
Q 017371          155 VNGSKL--RFANDVVEAS---DG--SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV  214 (372)
Q Consensus       155 ~~~~~~--~~~~~l~~d~---dG--~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~  214 (372)
                      ......  .....-.+..   +|  .||+...+.            +....+.|+.+|..||+..+.
T Consensus       145 ~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~------------e~~~~g~v~alD~~tG~~~W~  199 (582)
T 1flg_A          145 FADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGD------------EFGVVGRLFARDPDTGEEIWM  199 (582)
T ss_dssp             CSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCG------------GGCCBCEEEEECTTTCCEEEE
T ss_pred             CCCCCcCcccccCCEEeCCCcCCcEEEEEecccc------------ccCCCCEEEEEECCCCCEEee
Confidence            221100  0011112221   23  677743210            112367899999999987664

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=97.24  E-value=0.01  Score=60.31  Aligned_cols=131  Identities=7%  Similarity=-0.033  Sum_probs=75.9

Q ss_pred             ccEEEcCCCcEEEEecCCeEEEEe--CCceEEEEecCC-Ccc----cCeEEcCCCCE-EEEeCC---------CcEEEEc
Q 017371           82 EDASMDKNGVIYTATRDGWIKRLQ--DGTWVNWKFIDS-QTL----VGLTSTKEGHL-IICDNA---------NGLHKVS  144 (372)
Q Consensus        82 ~~i~~d~~G~l~v~~~~g~i~~~~--~g~~~~~~~~~~-~p~----~gl~~d~dG~l-~v~~~~---------~gv~~~~  144 (372)
                      .++...++|.+++.+ +|.|+.++  +|+.+.+..... ...    .++.+.|||+. .++...         ..++.+|
T Consensus        20 ~~~~w~~dg~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d   98 (740)
T 4a5s_A           20 YSLRWISDHEYLYKQ-ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD   98 (740)
T ss_dssp             CCEEECSSSEEEEEE-TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred             cccEECCCCcEEEEc-CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEE
Confidence            357788888766665 89999999  565544432211 111    03678999974 333221         1245677


Q ss_pred             -CCC-cEEEeeecCCcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCC----
Q 017371          145 -EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG----  217 (372)
Q Consensus       145 -~~g-~~~l~~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~----  217 (372)
                       .+| ...+... .    ......++.|||+ |.++                   .++.||.+|..+++...+...    
T Consensus        99 ~~~~~~~~l~~~-~----~~~~~~~~SPdG~~la~~-------------------~~~~i~~~~~~~~~~~~lt~~g~~~  154 (740)
T 4a5s_A           99 LNKRQLITEERI-P----NNTQWVTWSPVGHKLAYV-------------------WNNDIYVKIEPNLPSYRITWTGKED  154 (740)
T ss_dssp             TTTTEECCSSCC-C----TTEEEEEECSSTTCEEEE-------------------ETTEEEEESSTTSCCEECCSCCBTT
T ss_pred             CCCCcEEEcccC-C----CcceeeEECCCCCEEEEE-------------------ECCeEEEEECCCCceEEEcCCCCcc
Confidence             555 3322111 1    1345678889995 5443                   234688888776665543221    


Q ss_pred             ---------------ccCcceEEEecCCCEEEEEe
Q 017371          218 ---------------FYFANGVALSRDEDYVVVCE  237 (372)
Q Consensus       218 ---------------~~~~~gi~~~~dg~~l~v~~  237 (372)
                                     +....+++|+|||+.|.+..
T Consensus       155 ~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~  189 (740)
T 4a5s_A          155 IIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQ  189 (740)
T ss_dssp             TEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEE
T ss_pred             ceecCcccccccchhcCCCcceEECCCCCEEEEEE
Confidence                           11223588999999887753

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=97.23  E-value=0.0027  Score=62.39  Aligned_cols=73  Identities=16%  Similarity=0.191  Sum_probs=52.8

Q ss_pred             ccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCc--cCcceEEEecCCCEEEEE
Q 017371          159 KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF--YFANGVALSRDEDYVVVC  236 (372)
Q Consensus       159 ~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~--~~~~gi~~~~dg~~l~v~  236 (372)
                      .+..|..|++|++|+|||+..+..-..     .......+..++.+++.++++..++.+-  ....|++|+||+++||+.
T Consensus       474 ~f~~PDNL~fd~~G~LwI~eDg~~~~~-----~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn  548 (592)
T 3zwu_A          474 MFNSPDGLGFDKAGRLWILTDGDSSNA-----GDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             CCCCEEEEEECTTCCEEEEECCCCCCS-----GGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred             CccCCcceEECCCCCEEEEecCCCccc-----ccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence            467889999999999999865421111     1112235668999999999998877542  234589999999998876

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=97.22  E-value=0.075  Score=47.50  Aligned_cols=199  Identities=11%  Similarity=0.043  Sum_probs=95.8

Q ss_pred             CCccEEEcC--CC-cEEEEecCCeEEEEe--CCceEE---EEecCCCcccCeEEcCC--CCEEEEeCC-CcEEEEc-CCC
Q 017371           80 HPEDASMDK--NG-VIYTATRDGWIKRLQ--DGTWVN---WKFIDSQTLVGLTSTKE--GHLIICDNA-NGLHKVS-EDG  147 (372)
Q Consensus        80 ~p~~i~~d~--~G-~l~v~~~~g~i~~~~--~g~~~~---~~~~~~~p~~gl~~d~d--G~l~v~~~~-~gv~~~~-~~g  147 (372)
                      ...++++.+  +| .|..+..|+.|..|+  +++.+.   +....+... .+++.|+  |.++++... ..+..++ ..+
T Consensus        59 ~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~-~v~~~p~~~g~~lasgs~D~~i~lwd~~~~  137 (316)
T 3bg1_A           59 PVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVN-SVCWAPHDYGLILACGSSDGAISLLTYTGE  137 (316)
T ss_dssp             CEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCC-EEEECCTTTCSCEEEECSSSCEEEEEECSS
T ss_pred             cEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceE-EEEECCCCCCcEEEEEcCCCCEEEEecCCC
Confidence            455677764  35 566777899999998  443222   222223445 8999887  665555443 3466666 333


Q ss_pred             -cEEEeeecCCcccccccceEEccCCc---EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCC-eEEEE--eCC-cc
Q 017371          148 -VENFLSYVNGSKLRFANDVVEASDGS---LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN-ITTLV--ADG-FY  219 (372)
Q Consensus       148 -~~~l~~~~~~~~~~~~~~l~~d~dG~---i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~-~~~~~--~~~-~~  219 (372)
                       .........+. ....+.+++.+++.   +... .....  ......+..+..++.|..+|..++ +.+.+  ..+ -.
T Consensus       138 ~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~  213 (316)
T 3bg1_A          138 GQWEVKKINNAH-TIGCNAVSWAPAVVPGSLIDH-PSGQK--PNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSD  213 (316)
T ss_dssp             SCEEECCBTTSS-SSCBCCCEECCCCCC-------CCSCC--CCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSS
T ss_pred             CCcceeeeeccc-cCCcceEEEccccCCcccccc-ccccC--ccccceEEEecCCCeEEEEEeCCCCccceeeecccCCC
Confidence             21111111111 12345666666521   1000 00000  000001112334555655655432 22222  122 12


Q ss_pred             CcceEEEecCC---CEEEEEeCCCCeEEEEEccCCCCcc--eeeeccCCCCCCceeEEcCCCCEEEEEec
Q 017371          220 FANGVALSRDE---DYVVVCESWKFRCRKYWLKGERKGK--LETFAENLPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       220 ~~~gi~~~~dg---~~l~v~~~~~~~i~~~~~~g~~~~~--~~~~~~~~~g~p~~i~~d~~G~lwva~~~  284 (372)
                      ..+.++|+|++   ..++++.+.+..|..++++......  ...+. ...+....+++.++|++.++...
T Consensus       214 ~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~-~~~~~v~~v~~sp~g~~las~~~  282 (316)
T 3bg1_A          214 WVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLH-KFNDVVWHVSWSITANILAVSGG  282 (316)
T ss_dssp             CEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEE-ECSSCEEEEEECTTTCCEEEEES
T ss_pred             ceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhh-cCCCcEEEEEEcCCCCEEEEEcC
Confidence            34678899986   1355566567778878775421111  11111 12233567888999976665543

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=97.14  E-value=0.025  Score=58.88  Aligned_cols=149  Identities=5%  Similarity=-0.053  Sum_probs=92.1

Q ss_pred             CCccEEEcCCCc-EEEEecCCeEEEEe--CCce-EEEEecCCCcccCeEEcCCCCEEEE-eCCCcEEEEc-CCC-cEEEe
Q 017371           80 HPEDASMDKNGV-IYTATRDGWIKRLQ--DGTW-VNWKFIDSQTLVGLTSTKEGHLIIC-DNANGLHKVS-EDG-VENFL  152 (372)
Q Consensus        80 ~p~~i~~d~~G~-l~v~~~~g~i~~~~--~g~~-~~~~~~~~~p~~gl~~d~dG~l~v~-~~~~gv~~~~-~~g-~~~l~  152 (372)
                      ...++++.+ |. |..++.++.|..|+  +++. ..+. ..+... .++++++|+..++ .....|..++ .++ ...+.
T Consensus        60 ~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~-~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~  136 (902)
T 2oaj_A           60 AIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKIT-SIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFK  136 (902)
T ss_dssp             CEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEE-EEECCTTCSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             CEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEE-EEEECCCCCEEEEEcCCCcEEEEECCCCccccce
Confidence            356788888 66 77777899999999  4543 3333 234456 8999999975554 4444577787 555 32221


Q ss_pred             e-------ecCCcccccccceEEccCC-cEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCc------
Q 017371          153 S-------YVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF------  218 (372)
Q Consensus       153 ~-------~~~~~~~~~~~~l~~d~dG-~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~------  218 (372)
                      .       .........+..+++.+++ .+.++                 +..++.| .+|..+++........      
T Consensus       137 i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~-----------------g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~  198 (902)
T 2oaj_A          137 LDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLI-----------------SYEYVTL-TYSLVENEIKQSFIYELPPFAP  198 (902)
T ss_dssp             ECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEE-----------------ECSSCEE-EEETTTTEEEEEECCCBCTTCC
T ss_pred             eccccccccccccCCCCeEEEEEccCCCCEEEE-----------------EeCCCcE-EEECCCCceEEEEecccCCcCC
Confidence            1       0001112356789999864 44443                 1246778 8898877655443322      


Q ss_pred             -------------cCcceEEEecCCCEEEEEeCCCCeEEEEEccC
Q 017371          219 -------------YFANGVALSRDEDYVVVCESWKFRCRKYWLKG  250 (372)
Q Consensus       219 -------------~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g  250 (372)
                                   ...+.++|+|||+++..+ ..++.|..+++..
T Consensus       199 ~~~~~~~~~~~h~~~V~~v~fspdg~~lasg-s~Dg~i~lWd~~~  242 (902)
T 2oaj_A          199 GGDFSEKTNEKRTPKVIQSLYHPNSLHIITI-HEDNSLVFWDANS  242 (902)
T ss_dssp             CSTTCCCTTSCBCCCEEEEEECTTSSEEEEE-ETTCCEEEEETTT
T ss_pred             CcccccccccccCCCeEEEEEcCCCCEEEEE-ECCCeEEEEECCC
Confidence                         234678999999855544 4566788888754

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=97.10  E-value=0.056  Score=54.33  Aligned_cols=107  Identities=15%  Similarity=-0.025  Sum_probs=62.3

Q ss_pred             cccceEEccCCcE-EEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCc--ceEEEecCCCEEEEEeC
Q 017371          162 FANDVVEASDGSL-YFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA--NGVALSRDEDYVVVCES  238 (372)
Q Consensus       162 ~~~~l~~d~dG~i-~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~--~gi~~~~dg~~l~v~~~  238 (372)
                      ...++++.|||+. .++..             ..+.....|+.+|.++++... ...+...  .+++|+|||+.++++..
T Consensus       122 ~~~~~~~SPDG~~la~~~~-------------~~G~~~~~i~v~dl~tg~~~~-~~~~~~~~~~~~~wspDg~~l~~~~~  187 (695)
T 2bkl_A          122 SLGTWAVSWDGKKVAFAQK-------------PNAADEAVLHVIDVDSGEWSK-VDVIEGGKYATPKWTPDSKGFYYEWL  187 (695)
T ss_dssp             EEEEEEECTTSSEEEEEEE-------------ETTCSCCEEEEEETTTCCBCS-SCCBSCCTTCCCEECTTSSEEEEEEC
T ss_pred             EEEEEEECCCCCEEEEEEC-------------CCCCceEEEEEEECCCCCCcC-CcccCcccccceEEecCCCEEEEEEe
Confidence            3457788999973 33311             012234679999998887530 1122222  67999999998888764


Q ss_pred             C------------CCeEEEEEccCCCCcceeeeccC-CCCCCceeEEcCCCC-EEEEE
Q 017371          239 W------------KFRCRKYWLKGERKGKLETFAEN-LPGAPDNINLAPDGT-FWIAI  282 (372)
Q Consensus       239 ~------------~~~i~~~~~~g~~~~~~~~~~~~-~~g~p~~i~~d~~G~-lwva~  282 (372)
                      .            ..+|+++++.+........+... .+....++.+++||+ |.++.
T Consensus       188 d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~  245 (695)
T 2bkl_A          188 PTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYI  245 (695)
T ss_dssp             CCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEE
T ss_pred             cCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEE
Confidence            2            23488888866432222233211 112334688899996 44443

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=97.05  E-value=0.013  Score=57.04  Aligned_cols=177  Identities=11%  Similarity=-0.011  Sum_probs=100.5

Q ss_pred             CCccEEEcCC------C-cEEEEecCCeEEEEe--CCceE------------EEEecCCCcccCeEEcCCCCEEEEeCCC
Q 017371           80 HPEDASMDKN------G-VIYTATRDGWIKRLQ--DGTWV------------NWKFIDSQTLVGLTSTKEGHLIICDNAN  138 (372)
Q Consensus        80 ~p~~i~~d~~------G-~l~v~~~~g~i~~~~--~g~~~------------~~~~~~~~p~~gl~~d~dG~l~v~~~~~  138 (372)
                      ...++++.++      | .|..++.+|.|..|+  .++..            .+....+... ++++.+++.|..+..+.
T Consensus       209 ~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~-sv~~s~~~~lasgs~Dg  287 (524)
T 2j04_B          209 EVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLIT-TFDFLSPTTVVCGFKNG  287 (524)
T ss_dssp             SEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEE-EEEESSSSEEEEEETTS
T ss_pred             cEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEE-EEEecCCCeEEEEeCCC
Confidence            3556777765      3 455566899998888  33211            1211123344 88888777666665555


Q ss_pred             cEEEEc-CCC---cEEEeeecCCcccccccce--EEccCC-cEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeE
Q 017371          139 GLHKVS-EDG---VENFLSYVNGSKLRFANDV--VEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT  211 (372)
Q Consensus       139 gv~~~~-~~g---~~~l~~~~~~~~~~~~~~l--~~d~dG-~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~  211 (372)
                      .|..+| .++   ...+..  .   ...+..|  ++.++| ++.+|-+                 .++.|..+|..+++.
T Consensus       288 tV~lWD~~~~~~~~~~~~~--H---~~~V~sv~~~~s~~g~~~laS~S-----------------~D~tvklWD~~~~~~  345 (524)
T 2j04_B          288 FVAEFDLTDPEVPSFYDQV--H---DSYILSVSTAYSDFEDTVVSTVA-----------------VDGYFYIFNPKDIAT  345 (524)
T ss_dssp             EEEEEETTBCSSCSEEEEC--S---SSCEEEEEEECCTTSCCEEEEEE-----------------TTSEEEEECGGGHHH
T ss_pred             EEEEEECCCCCCceEEeec--c---cccEEEEEEEcCCCCCeEEEEec-----------------cCCeEEEEECCCCCc
Confidence            577777 444   222211  1   1245566  456777 7777633                 567888888765432


Q ss_pred             EEEeCC-c--cCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEe
Q 017371          212 TLVADG-F--YFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII  283 (372)
Q Consensus       212 ~~~~~~-~--~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~  283 (372)
                      .....+ .  .....++++|+++. +++....+.|..+++.....  ...+.. ..+....+++.++|.+.++..
T Consensus       346 ~~~~~~~~~~~~v~~v~fsp~~~~-l~s~~~d~tv~lwd~~~~~~--~~~l~g-H~~~V~sva~Sp~g~~l~Sgs  416 (524)
T 2j04_B          346 TKTTVSRFRGSNLVPVVYCPQIYS-YIYSDGASSLRAVPSRAAFA--VHPLVS-RETTITAIGVSRLHPMVLAGS  416 (524)
T ss_dssp             HCEEEEECSCCSCCCEEEETTTTE-EEEECSSSEEEEEETTCTTC--CEEEEE-CSSCEEEEECCSSCCBCEEEE
T ss_pred             ccccccccccCcccceEeCCCcCe-EEEeCCCCcEEEEECccccc--ceeeec-CCCceEEEEeCCCCCeEEEEE
Confidence            111111 1  12357999999985 55555566777777654321  122222 233456788889887666544

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=96.97  E-value=0.14  Score=51.35  Aligned_cols=103  Identities=11%  Similarity=0.022  Sum_probs=59.8

Q ss_pred             cccceEEccCCc-EEEE-eCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCC
Q 017371          162 FANDVVEASDGS-LYFT-VSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW  239 (372)
Q Consensus       162 ~~~~l~~d~dG~-i~vt-d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~  239 (372)
                      ...++++.+||+ |.++ +.+              +.....|+.+|.++|+.......-....+++|+ |++.|+++...
T Consensus       130 ~l~~~~~SpDg~~lAy~~~~~--------------G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~  194 (693)
T 3iuj_A          130 ALDQLSFSRDGRILAYSLSLA--------------GSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYD  194 (693)
T ss_dssp             EEEEEEECTTSSEEEEEEECS--------------SCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESS
T ss_pred             EEEEEEECCCCCEEEEEEecC--------------CCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEec
Confidence            455678899997 3333 221              222357899999988854431111112478899 99988887643


Q ss_pred             ------------CCeEEEEEccCCCCcceeeeccCC--CCCCceeEEcCCCCEE
Q 017371          240 ------------KFRCRKYWLKGERKGKLETFAENL--PGAPDNINLAPDGTFW  279 (372)
Q Consensus       240 ------------~~~i~~~~~~g~~~~~~~~~~~~~--~g~p~~i~~d~~G~lw  279 (372)
                                  ...|+++++.+.......++....  +.+-.++..++||...
T Consensus       195 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l  248 (693)
T 3iuj_A          195 KPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFL  248 (693)
T ss_dssp             CCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEE
T ss_pred             CcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEE
Confidence                        245888887654322233333211  1223357789999743

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=96.94  E-value=0.082  Score=49.94  Aligned_cols=149  Identities=9%  Similarity=0.039  Sum_probs=86.6

Q ss_pred             CCccEEEcCCCcEEE----E-ecCCeEEEEe--CC-----c----eEEEEe---cCCCcccCeEEcCC-CCEEEE-eCCC
Q 017371           80 HPEDASMDKNGVIYT----A-TRDGWIKRLQ--DG-----T----WVNWKF---IDSQTLVGLTSTKE-GHLIIC-DNAN  138 (372)
Q Consensus        80 ~p~~i~~d~~G~l~v----~-~~~g~i~~~~--~g-----~----~~~~~~---~~~~p~~gl~~d~d-G~l~v~-~~~~  138 (372)
                      ...++++.++|...+    + ..++.|..|+  ++     +    +..+..   ...... ++++.|+ ++++++ ..+.
T Consensus        94 ~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-~v~~~p~~~~~las~s~Dg  172 (434)
T 2oit_A           94 PIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVI-DMKWNPTVPSMVAVCLADG  172 (434)
T ss_dssp             CEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEE-EEEECSSCTTEEEEEETTS
T ss_pred             cccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceE-EEEECCCCCCEEEEEECCC
Confidence            477899999986554    2 3678888888  22     1    111221   123455 8999987 676665 4444


Q ss_pred             cEEEEc-CCCcEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeC-
Q 017371          139 GLHKVS-EDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-  216 (372)
Q Consensus       139 gv~~~~-~~g~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~-  216 (372)
                      .+..+| .++.......  + ....+..+++.++|+..++-                 ..++.|..+|.. ++...... 
T Consensus       173 ~v~iwD~~~~~~~~~~~--~-~~~~v~~v~wspdg~~lasg-----------------s~dg~v~iwd~~-~~~~~~~~~  231 (434)
T 2oit_A          173 SIAVLQVTETVKVCATL--P-STVAVTSVCWSPKGKQLAVG-----------------KQNGTVVQYLPT-LQEKKVIPC  231 (434)
T ss_dssp             CEEEEEESSSEEEEEEE--C-GGGCEEEEEECTTSSCEEEE-----------------ETTSCEEEECTT-CCEEEEECC
T ss_pred             eEEEEEcCCCcceeecc--C-CCCceeEEEEcCCCCEEEEE-----------------cCCCcEEEEccC-CcccccccC
Confidence            577788 6552211111  1 11356789999999765542                 256789999987 44333221 


Q ss_pred             Ccc-------CcceEEEecCCCEEEEEeCCCC------eEEEEEccC
Q 017371          217 GFY-------FANGVALSRDEDYVVVCESWKF------RCRKYWLKG  250 (372)
Q Consensus       217 ~~~-------~~~gi~~~~dg~~l~v~~~~~~------~i~~~~~~g  250 (372)
                      ...       ....+++++++.++.....+.+      .+..+++..
T Consensus       232 ~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~  278 (434)
T 2oit_A          232 PPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPK  278 (434)
T ss_dssp             CTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCC
T ss_pred             CcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEecc
Confidence            111       2346788888765555444432      366666653

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=96.80  E-value=0.21  Score=50.49  Aligned_cols=103  Identities=15%  Similarity=0.138  Sum_probs=58.8

Q ss_pred             cccceEEccCCcE-EEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCCC
Q 017371          162 FANDVVEASDGSL-YFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK  240 (372)
Q Consensus       162 ~~~~l~~d~dG~i-~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~  240 (372)
                      ...++++.|||+. .++...             .+.....|+.+|.++++.......-....+++|+|| +.++++....
T Consensus       164 ~~~~~~~SPDG~~la~~~~~-------------~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~  229 (741)
T 1yr2_A          164 ALDAWAASDDGRLLAYSVQD-------------GGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAE  229 (741)
T ss_dssp             EEEEEEECTTSSEEEEEEEE-------------TTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCC
T ss_pred             EEEeEEECCCCCEEEEEEcC-------------CCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecC
Confidence            4557889999973 333110             011224699999998876443111111257899999 8888876432


Q ss_pred             -------------CeEEEEEccCCCCcceeeeccC-CCCCCceeEEcCCCCE
Q 017371          241 -------------FRCRKYWLKGERKGKLETFAEN-LPGAPDNINLAPDGTF  278 (372)
Q Consensus       241 -------------~~i~~~~~~g~~~~~~~~~~~~-~~g~p~~i~~d~~G~l  278 (372)
                                   .+|+++++.+........+... .+.+..++.+++||+.
T Consensus       230 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~  281 (741)
T 1yr2_A          230 PKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRW  281 (741)
T ss_dssp             C--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE
T ss_pred             cccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCE
Confidence                         3588888755432222233211 1112346788999963

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=96.74  E-value=0.018  Score=54.62  Aligned_cols=146  Identities=7%  Similarity=-0.087  Sum_probs=80.0

Q ss_pred             cccceEEccCCcEEEE-eCCCCCCCcccccccccccCCCeEEEEeCCCC-----eE------EEEeCC-ccCcceEEEec
Q 017371          162 FANDVVEASDGSLYFT-VSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN-----IT------TLVADG-FYFANGVALSR  228 (372)
Q Consensus       162 ~~~~l~~d~dG~i~vt-d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~-----~~------~~~~~~-~~~~~gi~~~~  228 (372)
                      .+..+++.++|+..+. ..              .+..++.|..+|..++     +.      .....+ -.....++|+|
T Consensus        94 ~v~~l~~spdg~~lav~~~--------------sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p  159 (434)
T 2oit_A           94 PIHHLALSCDNLTLSACMM--------------SSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNP  159 (434)
T ss_dssp             CEEEEEECTTSCEEEEEEE--------------ETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECS
T ss_pred             cccEEEEcCCCCEEEEEEe--------------ccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECC
Confidence            4678999999975551 00              0124566777775432     10      111111 23456789999


Q ss_pred             CCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCc
Q 017371          229 DEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPK  308 (372)
Q Consensus       229 dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~  308 (372)
                      ++..++++.+.++.|..+++....  ...... ........++..++|++.++...                        
T Consensus       160 ~~~~~las~s~Dg~v~iwD~~~~~--~~~~~~-~~~~~v~~v~wspdg~~lasgs~------------------------  212 (434)
T 2oit_A          160 TVPSMVAVCLADGSIAVLQVTETV--KVCATL-PSTVAVTSVCWSPKGKQLAVGKQ------------------------  212 (434)
T ss_dssp             SCTTEEEEEETTSCEEEEEESSSE--EEEEEE-CGGGCEEEEEECTTSSCEEEEET------------------------
T ss_pred             CCCCEEEEEECCCeEEEEEcCCCc--ceeecc-CCCCceeEEEEcCCCCEEEEEcC------------------------
Confidence            843366655567778888886531  111111 11224677899999965555444                        


Q ss_pred             cccccccCCCceEEEEECCCCcEEEEEECCCCC---eeccceeeEEECCEEEE
Q 017371          309 LFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQ---LMSFVTSGLQVDNHLYV  358 (372)
Q Consensus       309 ~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~---~~~~~t~~~~~~g~L~i  358 (372)
                                .+.|..+|.+++....+..+...   ....+.++....+..|+
T Consensus       213 ----------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l  255 (434)
T 2oit_A          213 ----------NGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFA  255 (434)
T ss_dssp             ----------TSCEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEE
T ss_pred             ----------CCcEEEEccCCcccccccCCcccCCCCceeEEEEEEecCceEE
Confidence                      35677778777766655443221   01135566655444444

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=96.67  E-value=0.019  Score=55.80  Aligned_cols=116  Identities=17%  Similarity=0.187  Sum_probs=72.5

Q ss_pred             CcceEEEecCCCEEEEEeCCC---------------------CeEEEEEccCCC----Ccceeeecc-------------
Q 017371          220 FANGVALSRDEDYVVVCESWK---------------------FRCRKYWLKGER----KGKLETFAE-------------  261 (372)
Q Consensus       220 ~~~gi~~~~dg~~l~v~~~~~---------------------~~i~~~~~~g~~----~~~~~~~~~-------------  261 (372)
                      .|.+++++|..+.+|++-+++                     +.|+++..++..    ....+.+..             
T Consensus       385 RpEdi~v~p~~g~vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~~~~~~~~~  464 (592)
T 4a9v_A          385 RPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGTPKG  464 (592)
T ss_dssp             CEEEEEECTTTCCEEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTSGGG
T ss_pred             CccceeEcCCCCEEEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCccccccccc
Confidence            367899998666799987643                     568898875421    111233321             


Q ss_pred             --------CCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEECC-CCcEE
Q 017371          262 --------NLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTII  332 (372)
Q Consensus       262 --------~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~-~g~~~  332 (372)
                              .....||+|.+|++|+||+++-.....                  ..    ......+..++++++ +|++.
T Consensus       465 g~~~~~~~~~fnsPDnL~fd~~G~LWf~TD~~~~~------------------~g----~~~~~gnn~v~~~dp~tGel~  522 (592)
T 4a9v_A          465 GSSNITPQNMFNSPDGLGFDKAGRLWILTDGDSSN------------------AG----DFAGMGNNQMLCADPATGEIR  522 (592)
T ss_dssp             CCTTCCTTTCCCCEEEEEECTTCCEEEEECCCCCC------------------SG----GGTTCCSCEEEEECTTTCCEE
T ss_pred             CccCccccCccCCCCceEECCCCCEEEEeCCCcCc------------------cc----cccccCCceEEEEeCCCCeEE
Confidence                    012359999999999999965431000                  00    000122458999998 58887


Q ss_pred             EEEECCCCCeeccceeeEEE--CCEEEEEe
Q 017371          333 RNLVDPTGQLMSFVTSGLQV--DNHLYVIS  360 (372)
Q Consensus       333 ~~~~~~~g~~~~~~t~~~~~--~g~L~igs  360 (372)
                      ..+..|.+.   .++.+++.  +..||+.-
T Consensus       523 ~fl~~P~~a---EpnGiafSPD~ktLfV~v  549 (592)
T 4a9v_A          523 RFMVGPIGC---EVTGISFSPDQKTLFVGI  549 (592)
T ss_dssp             EEEECCTTC---EEEEEEECTTSSEEEEEE
T ss_pred             EEEeCCCCc---cccCCEECCCCCEEEEEE
Confidence            777666543   57778876  36888875

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=96.58  E-value=0.019  Score=56.42  Aligned_cols=116  Identities=17%  Similarity=0.206  Sum_probs=72.5

Q ss_pred             cCcceEEEecCCCEEEEEeCCC---------------------CeEEEEEccCCCCc----ceeeecc------------
Q 017371          219 YFANGVALSRDEDYVVVCESWK---------------------FRCRKYWLKGERKG----KLETFAE------------  261 (372)
Q Consensus       219 ~~~~gi~~~~dg~~l~v~~~~~---------------------~~i~~~~~~g~~~~----~~~~~~~------------  261 (372)
                      ..|.++.++|....+|++-+++                     +.|+++..++....    ..+.+..            
T Consensus       384 ~RpEgi~~~p~~g~vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a~~f~w~~~v~~g~p~~~~~~~~  463 (592)
T 3zwu_A          384 DRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGTPK  463 (592)
T ss_dssp             ECEEEEEECTTTCCEEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTSGG
T ss_pred             eccceeEEcCCCCEEEEEecCCcccccCcccccccccccCCcceeEEEEecCCCccccceeEEEEEEeccCccccccccc
Confidence            3467899998655699987743                     46999987643211    1122210            


Q ss_pred             ---------CCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEECCC-CcE
Q 017371          262 ---------NLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED-GTI  331 (372)
Q Consensus       262 ---------~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~-g~~  331 (372)
                               +....||||++|++|+|||++-.......++                      ....++.+..++++ |++
T Consensus       464 ~~~~~~~~~~~f~~PDNL~fd~~G~LwI~eDg~~~~~~~~----------------------~~~gnn~~~~~~~~~g~~  521 (592)
T 3zwu_A          464 GGSSNITPQNMFNSPDGLGFDKAGRLWILTDGDSSNAGDF----------------------AGMGNNQMLCADPATGEI  521 (592)
T ss_dssp             GCCTTCCTTTCCCCEEEEEECTTCCEEEEECCCCCCSGGG----------------------TTTCSCEEEEECTTTCCE
T ss_pred             ccccccCCCCCccCCcceEECCCCCEEEEecCCCcccccc----------------------cccccceEEEEeCCCCeE
Confidence                     0123599999999999999986531111000                      01224567777764 888


Q ss_pred             EEEEECCCCCeeccceeeEEE--CCEEEEE
Q 017371          332 IRNLVDPTGQLMSFVTSGLQV--DNHLYVI  359 (372)
Q Consensus       332 ~~~~~~~~g~~~~~~t~~~~~--~g~L~ig  359 (372)
                      .+.+..|.|.   .++++++.  +.+||+.
T Consensus       522 ~rf~~~P~ga---E~TG~~fspDg~tlfvn  548 (592)
T 3zwu_A          522 RRFMVGPIGC---EVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             EEEEECCTTC---EEEEEEECTTSSEEEEE
T ss_pred             EEEEeCCCCc---cCcCeeECCCCCEEEEE
Confidence            8777777764   67788886  3578775

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=96.39  E-value=0.33  Score=48.39  Aligned_cols=189  Identities=13%  Similarity=0.040  Sum_probs=93.2

Q ss_pred             EEEcCCCcEEEEe--cCCeEEEEe--CCceEEEEe-cCCCcccCeEEcCCCCEEEEeCC-------CcEEEEc-CCC-cE
Q 017371           84 ASMDKNGVIYTAT--RDGWIKRLQ--DGTWVNWKF-IDSQTLVGLTSTKEGHLIICDNA-------NGLHKVS-EDG-VE  149 (372)
Q Consensus        84 i~~d~~G~l~v~~--~~g~i~~~~--~g~~~~~~~-~~~~p~~gl~~d~dG~l~v~~~~-------~gv~~~~-~~g-~~  149 (372)
                      +++..+|.||+.-  .+..+.+||  .++++.... ...+-..+.++.++|+|||....       ..+.++| .++ .+
T Consensus       248 ~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~  327 (656)
T 1k3i_A          248 ISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT  327 (656)
T ss_dssp             EEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred             ccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcce
Confidence            5666789999875  345789999  566665432 11222214556678999998641       2377788 455 55


Q ss_pred             EEeeecCCcccccc-cceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccC--------
Q 017371          150 NFLSYVNGSKLRFA-NDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYF--------  220 (372)
Q Consensus       150 ~l~~~~~~~~~~~~-~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~--------  220 (372)
                      .+... ...++... ...++..++++|+.-..      +  ..++.......+.+||+.+++..........        
T Consensus       328 ~~~~~-~~~p~~~~~~~~~~~~~~~iyv~Gg~------~--g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~  398 (656)
T 1k3i_A          328 SLPNA-KVNPMLTADKQGLYRSDNHAWLFGWK------K--GSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDA  398 (656)
T ss_dssp             EETTS-CSGGGCCCCTTGGGTTTCSCCEEECG------G--GCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCC
T ss_pred             eCCCc-cccccccccccceeecCCceEEEECC------C--CcEEEecCccceeeeecCCcceeecCCccccccccCCCC
Confidence            54211 00111111 01122345667664211      0  0011112345789999987764433221111        


Q ss_pred             cceE--EEecCCCEEEEEeCCC--------C---eEEEEEccCCCCcceeeec-cCCC-C-CCceeEEcCCCCEEEEEec
Q 017371          221 ANGV--ALSRDEDYVVVCESWK--------F---RCRKYWLKGERKGKLETFA-ENLP-G-APDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       221 ~~gi--~~~~dg~~l~v~~~~~--------~---~i~~~~~~g~~~~~~~~~~-~~~~-g-~p~~i~~d~~G~lwva~~~  284 (372)
                      ..+.  .++.-++.+|+..-..        .   .|..|++...   ...... ...+ + .-...++-++|.|||....
T Consensus       399 ~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~---~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~  475 (656)
T 1k3i_A          399 MCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTS---PNTVFASNGLYFARTFHTSVVLPDGSTFITGGQ  475 (656)
T ss_dssp             BTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSC---CEEEECTTCCSSCCBSCEEEECTTSCEEEECCB
T ss_pred             CCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCC---CeeEEccCCCCCCcccCCeEECCCCCEEEECCc
Confidence            1233  3334344588875321        1   4556655432   222221 1222 1 1233456678999997653

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=96.17  E-value=0.44  Score=43.51  Aligned_cols=51  Identities=12%  Similarity=-0.043  Sum_probs=34.3

Q ss_pred             CCCeEEEEeCCCCeEEEEeCCcc-Ccc-eEEEecCCCEEEEEeCCCCeEEEEEc
Q 017371          197 PHGQLLKYDPSSNITTLVADGFY-FAN-GVALSRDEDYVVVCESWKFRCRKYWL  248 (372)
Q Consensus       197 ~~g~v~~~d~~t~~~~~~~~~~~-~~~-gi~~~~dg~~l~v~~~~~~~i~~~~~  248 (372)
                      .++.|..+|..+++......+.. ... .++|+|||++|+ +.+.++.|..++.
T Consensus       303 ~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~La-SGS~D~TIklWd~  355 (356)
T 2w18_A          303 TSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLL-AGQKDGNIFVYHY  355 (356)
T ss_dssp             TTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEE-EECTTSCEEEEEE
T ss_pred             CCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEE-EEECCCcEEEecC
Confidence            56788889999888666554432 234 478999999554 5555666766653

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=96.12  E-value=0.62  Score=40.67  Aligned_cols=142  Identities=10%  Similarity=0.004  Sum_probs=80.0

Q ss_pred             ccEEEcCCCcEEEEecCCeEEEEe--CCceEEEEe--cCC-CcccCeEEcCCCCEEEEeCCCc-EEEEc-CCC--cEEEe
Q 017371           82 EDASMDKNGVIYTATRDGWIKRLQ--DGTWVNWKF--IDS-QTLVGLTSTKEGHLIICDNANG-LHKVS-EDG--VENFL  152 (372)
Q Consensus        82 ~~i~~d~~G~l~v~~~~g~i~~~~--~g~~~~~~~--~~~-~p~~gl~~d~dG~l~v~~~~~g-v~~~~-~~g--~~~l~  152 (372)
                      ..|+..+++.|-+| .++.|..||  +|+......  ..+ ... .+++.++|+++++....| +..++ .++  ...+.
T Consensus        29 ~~l~WS~~~~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~-~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~  106 (318)
T 4ggc_A           29 NLVDWSSGNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYIS-SVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMT  106 (318)
T ss_dssp             BCEEECTTSEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEE-EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             eEEEECCCCEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEE-EEEECCCCCEEEEEECCCcEEEeecCCceeEEEec
Confidence            45778877755555 588999999  666544332  122 245 899999998776654444 66667 566  33221


Q ss_pred             eecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCe--EEEEeCCccCcceEEEecCC
Q 017371          153 SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI--TTLVADGFYFANGVALSRDE  230 (372)
Q Consensus       153 ~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~--~~~~~~~~~~~~gi~~~~dg  230 (372)
                          +   +...-..+..++.+.++-.                 ..+.+..++..++.  ...+.........+++.+++
T Consensus       107 ----~---h~~~~~~~~~~~~~l~s~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (318)
T 4ggc_A          107 ----S---HSARVGSLSWNSYILSSGS-----------------RSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG  162 (318)
T ss_dssp             ----C---CSSCEEEEEEETTEEEEEE-----------------TTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS
T ss_pred             ----C---ccceEEEeecCCCEEEEEe-----------------cCCceEeeecCCCceeEEEEcCccCceEEEEEcCCC
Confidence                1   1111223444555555422                 34555555544332  22222333344567788999


Q ss_pred             CEEEEEeCCCCeEEEEEccC
Q 017371          231 DYVVVCESWKFRCRKYWLKG  250 (372)
Q Consensus       231 ~~l~v~~~~~~~i~~~~~~g  250 (372)
                      +.++.+. .++.|..+++..
T Consensus       163 ~~l~s~~-~d~~i~iwd~~~  181 (318)
T 4ggc_A          163 RHLASGG-NDNLVNVWPSAP  181 (318)
T ss_dssp             SEEEEEE-TTSCEEEEESSC
T ss_pred             CEEEEEe-cCcceeEEECCC
Confidence            8665544 456788888754

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=95.41  E-value=0.54  Score=47.70  Aligned_cols=105  Identities=14%  Similarity=0.083  Sum_probs=59.9

Q ss_pred             ccceEEc-cCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCC-eEEEEeCCcc-CcceEEEecCCCEEEEEeC
Q 017371          163 ANDVVEA-SDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN-ITTLVADGFY-FANGVALSRDEDYVVVCES  238 (372)
Q Consensus       163 ~~~l~~d-~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~-~~~~~~~~~~-~~~gi~~~~dg~~l~v~~~  238 (372)
                      .....+. +||+ |.++...             .+.....|+.+|.+++ +.  +...+. ...+++|++||+.|+++..
T Consensus       176 ~~~~~~S~PDG~~lAy~~~~-------------~G~~~~~l~v~dl~~g~~~--l~~~~~~~~~~~~WspDg~~l~y~~~  240 (751)
T 2xe4_A          176 VMEVKPAPPEHDLVAFSVDM-------------SGNEVYTIEFKRISDPSQT--IADKVSGTNGEIVWGPDHTSLFYVTK  240 (751)
T ss_dssp             EEEEEECTTTTCEEEEEEES-------------SSSSCEEEEEEETTCTTCC--CCCCEEEECSCCEECSSTTEEEEEEE
T ss_pred             EeeeEecCCCCCEEEEEEeC-------------CCCceEEEEEEECCCCCEe--CCccccCceeeEEEecCCCEEEEEEE
Confidence            4467889 9996 4444221             1122346999999887 52  111111 1347899999988887753


Q ss_pred             CC----CeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCC-EEEEE
Q 017371          239 WK----FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAI  282 (372)
Q Consensus       239 ~~----~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwva~  282 (372)
                      ..    .+|+++++.+........+......+-.++.+.+||+ |.+..
T Consensus       241 d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~  289 (751)
T 2xe4_A          241 DETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGS  289 (751)
T ss_dssp             CTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEE
T ss_pred             CCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEe
Confidence            21    3688888866432222333222222334567889996 44433

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=95.38  E-value=1.2  Score=44.39  Aligned_cols=120  Identities=15%  Similarity=0.146  Sum_probs=69.6

Q ss_pred             CCccEEEcC-CCcEEEEe-cC----C-------eEEEEe--CCceEEEEec-C---CCcccCeEEcCCCCEEEEeCC--C
Q 017371           80 HPEDASMDK-NGVIYTAT-RD----G-------WIKRLQ--DGTWVNWKFI-D---SQTLVGLTSTKEGHLIICDNA--N  138 (372)
Q Consensus        80 ~p~~i~~d~-~G~l~v~~-~~----g-------~i~~~~--~g~~~~~~~~-~---~~p~~gl~~d~dG~l~v~~~~--~  138 (372)
                      .+.+.++-+ +|.||+.. .+    +       .+.+||  .++++..... .   .... +.++..+|.||+....  .
T Consensus       187 ~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~-~~~~~~~g~lyv~GG~~~~  265 (656)
T 1k3i_A          187 VPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCP-GISMDGNGQIVVTGGNDAK  265 (656)
T ss_dssp             CCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSC-EEEECTTSCEEEECSSSTT
T ss_pred             CceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccc-cccCCCCCCEEEeCCCCCC
Confidence            355677776 88888853 11    1       467788  5666543321 1   1122 4677789999998643  3


Q ss_pred             cEEEEc-CCC-cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEE
Q 017371          139 GLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV  214 (372)
Q Consensus       139 gv~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~  214 (372)
                      .+.++| .++ .+.+... +..  +.-...++-++|+||+.-..  +         ........+.+||+.+++.+.+
T Consensus       266 ~v~~yd~~t~~W~~~~~~-~~~--R~~~s~~~~~dg~iyv~GG~--~---------~~~~~~~~~e~yd~~t~~W~~~  329 (656)
T 1k3i_A          266 KTSLYDSSSDSWIPGPDM-QVA--RGYQSSATMSDGRVFTIGGS--W---------SGGVFEKNGEVYSPSSKTWTSL  329 (656)
T ss_dssp             CEEEEEGGGTEEEECCCC-SSC--CSSCEEEECTTSCEEEECCC--C---------CSSSCCCCEEEEETTTTEEEEE
T ss_pred             ceEEecCcCCceeECCCC-Ccc--ccccceEEecCCeEEEEeCc--c---------cCCcccccceEeCCCCCcceeC
Confidence            488888 455 4444321 211  22234556579999995210  0         0011234689999998888776

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=95.08  E-value=0.023  Score=52.56  Aligned_cols=52  Identities=10%  Similarity=-0.089  Sum_probs=29.3

Q ss_pred             CCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccC
Q 017371          197 PHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKG  250 (372)
Q Consensus       197 ~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g  250 (372)
                      .++.|+.+|.++|+..+.... .......+..+++ +|++.+.++.|+.++..+
T Consensus        17 ~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~-~~v~~s~dg~l~a~d~~t   68 (369)
T 2hz6_A           17 LDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEP-AFLPDPNDGSLYTLGSKN   68 (369)
T ss_dssp             TTSEEEEEETTTCCEEEEEEC-CCSCCCC-----C-CEEECTTTCCEEEC----
T ss_pred             CCCEEEEEECCCCCEEEEecC-CCceecceEcCCC-EEEEeCCCCEEEEEECCC
Confidence            457899999999988765443 2222233344554 677766677899998853

>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*

Probab=95.07  E-value=3.5  Score=42.03  Aligned_cols=152  Identities=9%  Similarity=0.017  Sum_probs=82.2

Q ss_pred             CCccEEEcCC--CcEEEEecCCeEEEEe-CC-ceEEEEecC-------CCcccCeEEcCC--CCEEEEeCC------CcE
Q 017371           80 HPEDASMDKN--GVIYTATRDGWIKRLQ-DG-TWVNWKFID-------SQTLVGLTSTKE--GHLIICDNA------NGL  140 (372)
Q Consensus        80 ~p~~i~~d~~--G~l~v~~~~g~i~~~~-~g-~~~~~~~~~-------~~p~~gl~~d~d--G~l~v~~~~------~gv  140 (372)
                      ...+|++++.  +.+|++...|.|++-+ .| .++.+....       .... .|++++.  +.+|++...      .+|
T Consensus        16 ~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG~tW~~~~~~~~~~~~~~~~i~-~ia~dp~~~~~i~~~~g~~~~~~~~~v   94 (789)
T 1sqj_A           16 YITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTE-SIALDPNNPDRLYLAQGRYVGDEWAAF   94 (789)
T ss_dssp             CEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEE-EEEEETTEEEEEEEEECSCTTSSCCEE
T ss_pred             cEEEEEECCCCCCEEEEEecCCCEEEecCCCCCeeECccCCCcccccCCcee-EEEECCCCCCEEEEEeCccCCCcccEE
Confidence            5667888863  6899999888899988 44 355433211       1234 7888874  578887533      355


Q ss_pred             EEEcCCC--cEEEeeecC--C-ccc-ccccceEEccC--CcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEE
Q 017371          141 HKVSEDG--VENFLSYVN--G-SKL-RFANDVVEASD--GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT  212 (372)
Q Consensus       141 ~~~~~~g--~~~l~~~~~--~-~~~-~~~~~l~~d~d--G~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~  212 (372)
                      ++-+..|  .+.+.....  + .+. .....|++++.  +.+|+..                  ..+.||+=+-.....+
T Consensus        95 ~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~------------------~~~gl~~S~DgG~TW~  156 (789)
T 1sqj_A           95 YVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGT------------------RTEGIWKSSDRAKTWT  156 (789)
T ss_dssp             EEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEEC------------------SSSCEEEESSTTSSCE
T ss_pred             EEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEe------------------ccCCEEEECCCCcccC
Confidence            5555555  444432111  1 000 12346888863  4777752                  1345776543323444


Q ss_pred             EEeCCc------cCcceEEEec-CCCEEEEEeCCCCeEEEEEccCC
Q 017371          213 LVADGF------YFANGVALSR-DEDYVVVCESWKFRCRKYWLKGE  251 (372)
Q Consensus       213 ~~~~~~------~~~~gi~~~~-dg~~l~v~~~~~~~i~~~~~~g~  251 (372)
                      .+....      .....++++| +.+.+|++......|++ ..++.
T Consensus       157 ~~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~v~~-S~DgG  201 (789)
T 1sqj_A          157 NVTSIPDAFTNGIGYTSVIFDPERNGTIYASATAPQGMYV-THDGG  201 (789)
T ss_dssp             EETTSCCCCSTTTCEEEEEECTTSTTCEEEEESSTTCEEE-ESSTT
T ss_pred             CCccCccccCCCCCeEEEEECCCCCCEEEEEEcCCCeEEE-EcCCC
Confidence            443210      1112456666 44568887643245654 44544

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=94.59  E-value=2.7  Score=38.48  Aligned_cols=184  Identities=12%  Similarity=0.010  Sum_probs=89.7

Q ss_pred             CCccEEEcC--------CCcEEE-EecCCeEEEEe--CCc-eEEEEecCCCcccCeEEcCCC-CEEEE-eCCCcEEEEc-
Q 017371           80 HPEDASMDK--------NGVIYT-ATRDGWIKRLQ--DGT-WVNWKFIDSQTLVGLTSTKEG-HLIIC-DNANGLHKVS-  144 (372)
Q Consensus        80 ~p~~i~~d~--------~G~l~v-~~~~g~i~~~~--~g~-~~~~~~~~~~p~~gl~~d~dG-~l~v~-~~~~gv~~~~-  144 (372)
                      ...++++.+        +|++.+ +..|+.|..||  ++. ............ .+++.|++ +++++ ..+.-+..+| 
T Consensus       138 ~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~-~v~~~p~~~~~l~~~~~d~~v~~wd~  216 (393)
T 4gq1_A          138 FVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGI-SVQFRPSNPNQLIVGERNGNIRIFDW  216 (393)
T ss_dssp             CEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEE-EEEEETTEEEEEEEEETTSEEEEEET
T ss_pred             ceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcE-EEEECCCCCceEEecCCCCEEEEEEC
Confidence            355677765        565554 44899999998  443 333333334556 89999987 34444 4434466677 


Q ss_pred             CCC--cEEEeeecC----------C----------cccccccceEEc-cCCcEEEEeCCCCCCCcccccccccccCCCeE
Q 017371          145 EDG--VENFLSYVN----------G----------SKLRFANDVVEA-SDGSLYFTVSSSKYLPHEYCLDILEGKPHGQL  201 (372)
Q Consensus       145 ~~g--~~~l~~~~~----------~----------~~~~~~~~l~~d-~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v  201 (372)
                      ..+  .........          .          ........+.+. +||+..++-.                 .++.+
T Consensus       217 ~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s-----------------~d~~i  279 (393)
T 4gq1_A          217 TLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMC-----------------KSGAW  279 (393)
T ss_dssp             TCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEEC-----------------TTSEE
T ss_pred             CCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEe-----------------CCCCE
Confidence            444  111110000          0          000122234443 5665544422                 34556


Q ss_pred             EEEeCCCCeEEEEe-------------------CCccCcceEEEec-CCCEEEEEeCCCCeEEEEEccCCCCcceeeecc
Q 017371          202 LKYDPSSNITTLVA-------------------DGFYFANGVALSR-DEDYVVVCESWKFRCRKYWLKGERKGKLETFAE  261 (372)
Q Consensus       202 ~~~d~~t~~~~~~~-------------------~~~~~~~gi~~~~-dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~  261 (372)
                      ..+|..+++.....                   .......+..+++ .++.+.++...+..|..++........  ... 
T Consensus       280 ~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~--~~~-  356 (393)
T 4gq1_A          280 LRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNS--IPI-  356 (393)
T ss_dssp             EEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCE--EEE-
T ss_pred             EEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEE--Eec-
Confidence            66665433221110                   0111122344444 345566666667788888876443221  122 


Q ss_pred             CCCCCCceeEEcCCCCEEEEEec
Q 017371          262 NLPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       262 ~~~g~p~~i~~d~~G~lwva~~~  284 (372)
                      ........+++.+||+++++...
T Consensus       357 ~~~~~V~svafspdG~~LA~as~  379 (393)
T 4gq1_A          357 QLGMPIVDFCWHQDGSHLAIATE  379 (393)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEES
T ss_pred             CCCCcEEEEEEcCCCCEEEEEeC
Confidence            12223567999999998776654

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=94.58  E-value=2.6  Score=38.34  Aligned_cols=152  Identities=11%  Similarity=-0.036  Sum_probs=75.7

Q ss_pred             CeEEcC---CCCEEEEeCC-CcEEEEc-CCC--cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCccccccccc
Q 017371          122 GLTSTK---EGHLIICDNA-NGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILE  194 (372)
Q Consensus       122 gl~~d~---dG~l~v~~~~-~gv~~~~-~~g--~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~  194 (372)
                      .+++.+   +|.++++... .-|..+| .+|  +..+...  .........+++.++|.+.++-+..     .....+..
T Consensus       183 ~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~--~~~v~~v~~vafSpdG~~lvs~s~~-----~~~w~laS  255 (356)
T 2w18_A          183 ILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHID--DSYQASVCHKAYSEMGLLFIVLSHP-----CAKESESL  255 (356)
T ss_dssp             EEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECC--C---CCCEEEEEEETTEEEEEEC---------------
T ss_pred             eEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCC--CcceeeeEEEEECCCCCEEEEeccC-----CCcceeec
Confidence            345554   6788887555 4466677 677  4555311  1111245567899999877653320     00112334


Q ss_pred             ccCCCeEEEEeCCCCeEEEEeCCccCcc-----eEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCce
Q 017371          195 GKPHGQLLKYDPSSNITTLVADGFYFAN-----GVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDN  269 (372)
Q Consensus       195 ~~~~g~v~~~d~~t~~~~~~~~~~~~~~-----gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~  269 (372)
                      +...+.+..+|+++++...+.. ...|.     -+..+.++. +.++.+.++.|..+++...+.  ...+.......-..
T Consensus       256 Gs~D~tIklWd~~tgk~l~v~~-~~~p~Gh~~~~lsg~~sg~-~lASgS~DgTIkIWDl~tGk~--l~tL~gH~~~vvs~  331 (356)
T 2w18_A          256 RSPVFQLIVINPKTTLSVGVML-YCLPPGQAGRFLEGDVKDH-CAAAILTSGTIAIWDLLLGQC--TALLPPVSDQHWSF  331 (356)
T ss_dssp             --CCEEEEEEETTTTEEEEEEE-ECCCTTCCCCEEEEEEETT-EEEEEETTSCEEEEETTTCSE--EEEECCC--CCCCE
T ss_pred             cCCCcEEEEEECCCCEEEEEEE-eeccCCCcceeEccccCCC-EEEEEcCCCcEEEEECCCCcE--EEEecCCCCCeEEE
Confidence            5567778888998887543221 00011     111222233 455555566788888765321  12222111111234


Q ss_pred             eEEcCCCCEEEEEec
Q 017371          270 INLAPDGTFWIAIIK  284 (372)
Q Consensus       270 i~~d~~G~lwva~~~  284 (372)
                      +++.+||.+.++...
T Consensus       332 vafSPDG~~LaSGS~  346 (356)
T 2w18_A          332 VKWSGTDSHLLAGQK  346 (356)
T ss_dssp             EEECSSSSEEEEECT
T ss_pred             EEECCCCCEEEEEEC
Confidence            789999987776654

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=94.57  E-value=2.7  Score=42.13  Aligned_cols=147  Identities=11%  Similarity=0.080  Sum_probs=83.7

Q ss_pred             CCCcEEEEec-----CCeEEEEe--CCceEEEE-e------cCCCcccCeEEcC-CCCEEEEeCC-------CcEEEEc-
Q 017371           88 KNGVIYTATR-----DGWIKRLQ--DGTWVNWK-F------IDSQTLVGLTSTK-EGHLIICDNA-------NGLHKVS-  144 (372)
Q Consensus        88 ~~G~l~v~~~-----~g~i~~~~--~g~~~~~~-~------~~~~p~~gl~~d~-dG~l~v~~~~-------~gv~~~~-  144 (372)
                      -++.||+...     ...+++++  +++|+... .      +..+...+.+... +|.|||....       ..+.++| 
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            4667887542     23588888  67788776 2      2222221344444 7889987532       2377788 


Q ss_pred             CCC-cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCC--ccCc
Q 017371          145 EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG--FYFA  221 (372)
Q Consensus       145 ~~g-~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~--~~~~  221 (372)
                      .+. .+.+... +..  +.-...++-.+|+||+.-..               ...+.+++||+.+++++.+...  ...+
T Consensus       476 ~t~~W~~~~~~-p~~--R~~h~~~~~~~~~iyv~GG~---------------~~~~~v~~yd~~t~~W~~~~~~g~~p~~  537 (695)
T 2zwa_A          476 KTREWSMIKSL-SHT--RFRHSACSLPDGNVLILGGV---------------TEGPAMLLYNVTEEIFKDVTPKDEFFQN  537 (695)
T ss_dssp             TTTEEEECCCC-SBC--CBSCEEEECTTSCEEEECCB---------------CSSCSEEEEETTTTEEEECCCSSGGGGS
T ss_pred             CCCcEEECCCC-CCC--cccceEEEEcCCEEEEECCC---------------CCCCCEEEEECCCCceEEccCCCCCCCc
Confidence            444 5544321 211  22233444358999995210               0111699999999988876541  2222


Q ss_pred             ----ceEEEecCCCEEEEEeCC-------CCeEEEEEccCCC
Q 017371          222 ----NGVALSRDEDYVVVCESW-------KFRCRKYWLKGER  252 (372)
Q Consensus       222 ----~gi~~~~dg~~l~v~~~~-------~~~i~~~~~~g~~  252 (372)
                          ..++++.+.+.+|+..-.       .+.+++|++....
T Consensus       538 r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~  579 (695)
T 2zwa_A          538 SLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN  579 (695)
T ss_dssp             CCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred             ccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence                235556554568887632       2569999987653

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=94.38  E-value=0.2  Score=45.58  Aligned_cols=109  Identities=9%  Similarity=0.144  Sum_probs=61.2

Q ss_pred             CCcEEEEecCCeEEEEe--CCceEEEEecC--CCcccCeE---EcCCCCEEEEe--CCCcEEEEc-CCCcEEEeeecCC-
Q 017371           89 NGVIYTATRDGWIKRLQ--DGTWVNWKFID--SQTLVGLT---STKEGHLIICD--NANGLHKVS-EDGVENFLSYVNG-  157 (372)
Q Consensus        89 ~G~l~v~~~~g~i~~~~--~g~~~~~~~~~--~~p~~gl~---~d~dG~l~v~~--~~~gv~~~~-~~g~~~l~~~~~~-  157 (372)
                      +|.+|+++.+|.|+.++  +|+...-....  ..+. +..   ...+|.+|+..  ....|+.++ .+|.+.+....+. 
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~-~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~l   88 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLI-EIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQL   88 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSE-ECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHH
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcE-EecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccc
Confidence            56899999999999999  67654332222  1122 111   01245677664  234477787 5663333332221 


Q ss_pred             ---cccccccceEE------ccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeC
Q 017371          158 ---SKLRFANDVVE------ASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD  216 (372)
Q Consensus       158 ---~~~~~~~~l~~------d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~  216 (372)
                         .++..-....+      ..+|.+|+.                  ..+|+++.+|..+|+..+...
T Consensus        89 v~~SP~~~~~~pvv~~~~~~~~~g~Vy~G------------------s~~g~l~ald~~tG~~~W~~~  138 (339)
T 2be1_A           89 VSTSPLHLKTNIVVNDSGKIVEDEKVYTG------------------SMRTIMYTINMLNGEIISAFG  138 (339)
T ss_dssp             HTTCSEEEECC----------CCEEEEEC------------------EEEEEEEEEETTTCCEEEEES
T ss_pred             eeccccccCCCceeecccccccCCEEEEE------------------ecCCEEEEEECCCCcEEEEEe
Confidence               11111111122      257888884                  357899999999999887653

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=94.00  E-value=2.2  Score=43.23  Aligned_cols=113  Identities=11%  Similarity=0.083  Sum_probs=63.1

Q ss_pred             CeEEc-CCCC-E-EEEeCC----CcEEEEc-CCCcEEEeeecCCcccccccceEEccCC-cEEEEeCCCCCCCccccccc
Q 017371          122 GLTST-KEGH-L-IICDNA----NGLHKVS-EDGVENFLSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDI  192 (372)
Q Consensus       122 gl~~d-~dG~-l-~v~~~~----~gv~~~~-~~g~~~l~~~~~~~~~~~~~~l~~d~dG-~i~vtd~~~~~~~~~~~~~~  192 (372)
                      +.++. |||+ | |+.+..    ..|+.++ .+|.+.+.....    ....++++.+|| .|+++...            
T Consensus       178 ~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~----~~~~~~~WspDg~~l~y~~~d------------  241 (751)
T 2xe4_A          178 EVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS----GTNGEIVWGPDHTSLFYVTKD------------  241 (751)
T ss_dssp             EEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE----EECSCCEECSSTTEEEEEEEC------------
T ss_pred             eeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc----CceeeEEEecCCCEEEEEEEC------------
Confidence            67889 9997 3 333322    1277777 444111111111    113467888998 56665321            


Q ss_pred             ccccCCCeEEEEeCCCCeE--EEEeC--CccCcceEEEecCCCEEEEEeC--CCCeEEEEEccCC
Q 017371          193 LEGKPHGQLLKYDPSSNIT--TLVAD--GFYFANGVALSRDEDYVVVCES--WKFRCRKYWLKGE  251 (372)
Q Consensus       193 ~~~~~~g~v~~~d~~t~~~--~~~~~--~~~~~~gi~~~~dg~~l~v~~~--~~~~i~~~~~~g~  251 (372)
                       .......||+++..+++.  +.+..  .-.+-.++.+++||++|+++..  ....|+.++++++
T Consensus       242 -~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~  305 (751)
T 2xe4_A          242 -ETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG  305 (751)
T ss_dssp             -TTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred             -CCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence             001123689998876542  22221  1123346789999999888653  2457888888754

>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}

Probab=93.52  E-value=7.2  Score=39.51  Aligned_cols=181  Identities=13%  Similarity=0.070  Sum_probs=95.7

Q ss_pred             CCccEEEcCCC--cEEEEecCCeEEEEe-CC-ceEEEEecC------------CCcccCeEEcC--CCCEEEEeC-----
Q 017371           80 HPEDASMDKNG--VIYTATRDGWIKRLQ-DG-TWVNWKFID------------SQTLVGLTSTK--EGHLIICDN-----  136 (372)
Q Consensus        80 ~p~~i~~d~~G--~l~v~~~~g~i~~~~-~g-~~~~~~~~~------------~~p~~gl~~d~--dG~l~v~~~-----  136 (372)
                      ...+|++++.+  .+|++...|.|++-. .| .++.+....            .... .|++|+  .+.+|++..     
T Consensus        22 ~i~~i~~~p~~~~~~y~~~~~ggv~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~-~ia~dp~~~~~~~~~~g~~~~~  100 (763)
T 3a0f_A           22 FISGLVAHPTEKDLIYARTDIGGTYRWNAAKWEWEPITDFIINNALAGNGANLLGTE-SIALDPHNPDRLYLAQGDYVQW  100 (763)
T ss_dssp             CEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCBTTCSSSCCCCCCSEE-EEECCTTCTTCEEEEECSCTTT
T ss_pred             ceeEEEeCCCCCCEEEEEeccCcEEEECCCCCCeeECccCccccccCCCccccccee-EEEECCCCCCEEEEEecccccC
Confidence            56789998744  799998778899988 44 355433211            1134 678887  367998753     


Q ss_pred             --CCcEEEEcCCC--cEEEeeecC--Cc-ccc-cccceEEccC--CcEEEEeCCCCCCCcccccccccccCCCeEEEEeC
Q 017371          137 --ANGLHKVSEDG--VENFLSYVN--GS-KLR-FANDVVEASD--GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDP  206 (372)
Q Consensus       137 --~~gv~~~~~~g--~~~l~~~~~--~~-~~~-~~~~l~~d~d--G~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~  206 (372)
                        ..+|++-+..|  .+.+.....  +. ..+ ....|++++.  +.+|+..                  ..+.||+=+-
T Consensus       101 ~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~------------------~~~~l~~S~D  162 (763)
T 3a0f_A          101 DPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGS------------------RTQGLWRSTD  162 (763)
T ss_dssp             CSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEEC------------------SSSCEEEESS
T ss_pred             CCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEe------------------CCCcEEEECC
Confidence              24566655545  555432211  00 001 1136888764  6788852                  2345775432


Q ss_pred             CCCeEEEEeCCccC-------cceEEEecC-CCEEEEEeCCCCeEEEEEccCCCCcceeeeccC----------------
Q 017371          207 SSNITTLVADGFYF-------ANGVALSRD-EDYVVVCESWKFRCRKYWLKGERKGKLETFAEN----------------  262 (372)
Q Consensus       207 ~t~~~~~~~~~~~~-------~~gi~~~~d-g~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~----------------  262 (372)
                      .....+.+. .+..       ...++++|. .+.+|++......|++= .++.+.-+  .....                
T Consensus       163 gG~TW~~~~-~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~g~v~~S-~DgG~tW~--~~~~~~~~~~~~~~~~~~p~~  238 (763)
T 3a0f_A          163 RAQTWSRMN-QLPDSSTYGIGIISVIFDPKNVGTAYVASHAVGGLWVT-WDGGANWS--QVGGQPTQWSDWTKSIVAASG  238 (763)
T ss_dssp             TTSSCEECT-TSCCCSCTTTCEEEEEECSSSTTCEEEEESSTTCEEEE-SSSSSSCE--ECTTCCCSCCHHHHHHHHHHC
T ss_pred             CCcCccccc-cCcccCCCccceEEEEECCCCCCEEEEEEeCCCeEEEE-CCCCCCcc--ccCCCcccccccccccccccc
Confidence            223344332 2211       124566664 34588776543235543 34332211  11100                


Q ss_pred             -----CCCCCceeEEcCCCCEEEEEe
Q 017371          263 -----LPGAPDNINLAPDGTFWIAII  283 (372)
Q Consensus       263 -----~~g~p~~i~~d~~G~lwva~~  283 (372)
                           ....+..++++++|.+|++..
T Consensus       239 ~~~~~~~~~~~~~~~~~~g~l~~~~~  264 (763)
T 3a0f_A          239 TAIQSSGPLPIKIALGKNGRLYITYS  264 (763)
T ss_dssp             CCCSSSSCEEEEEEECTTSCEEEEEE
T ss_pred             ccccCCCCcceeEEECCCCcEEEEec
Confidence                 011234567788999999864

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=92.55  E-value=6.1  Score=36.05  Aligned_cols=135  Identities=10%  Similarity=0.030  Sum_probs=70.9

Q ss_pred             EEEEecCCeEEEEe--CCceEEEEe---c---CCCcccCeEEcC--------CCCEEEEeCC-CcEEEEc-CCC--cEEE
Q 017371           92 IYTATRDGWIKRLQ--DGTWVNWKF---I---DSQTLVGLTSTK--------EGHLIICDNA-NGLHKVS-EDG--VENF  151 (372)
Q Consensus        92 l~v~~~~g~i~~~~--~g~~~~~~~---~---~~~p~~gl~~d~--------dG~l~v~~~~-~gv~~~~-~~g--~~~l  151 (372)
                      |..+..|+.|..++  .++......   .   .+... .+++.|        ||+++++... +-+..+| .++  ...+
T Consensus       104 las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~-~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~  182 (393)
T 4gq1_A          104 LACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVN-DIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAG  182 (393)
T ss_dssp             EEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEE-EEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEE
T ss_pred             EEEEeCCCcEEEEECCCCccceeeeecccCCCCCceE-EEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeee
Confidence            33444788888887  444332211   1   12345 788875        7877776544 4577777 444  2222


Q ss_pred             eeecCCcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeC--------------
Q 017371          152 LSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD--------------  216 (372)
Q Consensus       152 ~~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~--------------  216 (372)
                      . ...    ..+..+++.|++. +.++                 +..++.|..+|..+++......              
T Consensus       183 ~-~~~----~~v~~v~~~p~~~~~l~~-----------------~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~  240 (393)
T 4gq1_A          183 Y-PLS----SPGISVQFRPSNPNQLIV-----------------GERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLN  240 (393)
T ss_dssp             E-ECS----SCEEEEEEETTEEEEEEE-----------------EETTSEEEEEETTCCC----------CSCCCSEEEE
T ss_pred             c-CCC----CCcEEEEECCCCCceEEe-----------------cCCCCEEEEEECCCCcccccccccCCcccceEEecc
Confidence            1 111    2345788888874 4443                 2246677777776554322110              


Q ss_pred             -----------C-ccCcceEEEe-cCCCEEEEEeCCCCeEEEEEccC
Q 017371          217 -----------G-FYFANGVALS-RDEDYVVVCESWKFRCRKYWLKG  250 (372)
Q Consensus       217 -----------~-~~~~~gi~~~-~dg~~l~v~~~~~~~i~~~~~~g  250 (372)
                                 + ...-..+.++ +|++.++ +...++.+..+++..
T Consensus       241 ~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~-s~s~d~~i~vwd~~~  286 (393)
T 4gq1_A          241 TLPLVNTCHSSGIASSLANVRWIGSDGSGIL-AMCKSGAWLRWNLFA  286 (393)
T ss_dssp             SGGGC------CCSSSCSEEEEETTTTCEEE-EECTTSEEEEEEC--
T ss_pred             cccceeeeecccccccceeeeeecCCCCEEE-EEeCCCCEEEEECcc
Confidence                       0 0112345665 7888554 555667787777653

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=92.38  E-value=5.9  Score=35.50  Aligned_cols=153  Identities=14%  Similarity=0.143  Sum_probs=75.8

Q ss_pred             CCcEEEEe--cCCeEEEEe-C---CceEEEEecC--CCcccCeEEcCCCCEEEEeCC-----------CcEEEEc-CCC-
Q 017371           89 NGVIYTAT--RDGWIKRLQ-D---GTWVNWKFID--SQTLVGLTSTKEGHLIICDNA-----------NGLHKVS-EDG-  147 (372)
Q Consensus        89 ~G~l~v~~--~~g~i~~~~-~---g~~~~~~~~~--~~p~~gl~~d~dG~l~v~~~~-----------~gv~~~~-~~g-  147 (372)
                      ++.||+.-  ....+++++ .   .+++......  .+...+++. -+|.|||....           ..+.++| .+. 
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~   97 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAF-IDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS   97 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEE-ETTEEEEECCEEECTTSCEEECCCEEEEETTTTE
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEE-ECCEEEEEcCCCCCCCccceeeccEEEEeCCCCc
Confidence            67888754  345799998 4   5566554322  222213333 36889987432           2377787 445 


Q ss_pred             cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccc----------------------cccccCCCeEEEEe
Q 017371          148 VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLD----------------------ILEGKPHGQLLKYD  205 (372)
Q Consensus       148 ~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~----------------------~~~~~~~g~v~~~d  205 (372)
                      .+.+....+..  +.-...+. -+++||+.-....-.......+                      .........+++||
T Consensus        98 W~~~~~~~p~~--r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd  174 (357)
T 2uvk_A           98 WVKLMSHAPMG--MAGHVTFV-HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFD  174 (357)
T ss_dssp             EEECSCCCSSC--CSSEEEEE-ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEE
T ss_pred             EEECCCCCCcc--cccceEEE-ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEe
Confidence            55443322111  12222333 6789998532100000000000                      00001236799999


Q ss_pred             CCCCeEEEEeCCccCc----ceEEEecCCCEEEEEeC------CCCeEEEEEc
Q 017371          206 PSSNITTLVADGFYFA----NGVALSRDEDYVVVCES------WKFRCRKYWL  248 (372)
Q Consensus       206 ~~t~~~~~~~~~~~~~----~gi~~~~dg~~l~v~~~------~~~~i~~~~~  248 (372)
                      +.+.+.+.+... ..+    .+++..  ++.+|+..-      ....++.|++
T Consensus       175 ~~~~~W~~~~~~-p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~~d~  224 (357)
T 2uvk_A          175 PSTQQWSYAGES-PWYGTAGAAVVNK--GDKTWLINGEAKPGLRTDAVFELDF  224 (357)
T ss_dssp             TTTTEEEEEEEC-SSCCCBSCEEEEE--TTEEEEECCEEETTEECCCEEEEEC
T ss_pred             CCCCcEEECCCC-CCCCcccccEEEE--CCEEEEEeeecCCCcccCceEEEEe
Confidence            999988876432 211    223332  445887642      1345788876

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=91.41  E-value=2.8  Score=37.99  Aligned_cols=24  Identities=13%  Similarity=0.363  Sum_probs=20.2

Q ss_pred             CCCcEEEEecCCeEEEEe--CCceEE
Q 017371           88 KNGVIYTATRDGWIKRLQ--DGTWVN  111 (372)
Q Consensus        88 ~~G~l~v~~~~g~i~~~~--~g~~~~  111 (372)
                      .+|.+|++..+|+++.++  +|+...
T Consensus       110 ~~g~Vy~Gs~~g~l~ald~~tG~~~W  135 (339)
T 2be1_A          110 EDEKVYTGSMRTIMYTINMLNGEIIS  135 (339)
T ss_dssp             CCEEEEECEEEEEEEEEETTTCCEEE
T ss_pred             cCCEEEEEecCCEEEEEECCCCcEEE
Confidence            578999999999999999  676543

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=87.36  E-value=14  Score=32.29  Aligned_cols=132  Identities=14%  Similarity=0.246  Sum_probs=68.3

Q ss_pred             EEEEe--CCceEEEEec-CCCcccCeEEcCCCCEEEEeCC--------CcEEEEc-CCC-cEEEeeecCCcccccccceE
Q 017371          101 IKRLQ--DGTWVNWKFI-DSQTLVGLTSTKEGHLIICDNA--------NGLHKVS-EDG-VENFLSYVNGSKLRFANDVV  167 (372)
Q Consensus       101 i~~~~--~g~~~~~~~~-~~~p~~gl~~d~dG~l~v~~~~--------~gv~~~~-~~g-~~~l~~~~~~~~~~~~~~l~  167 (372)
                      +++++  .++++..... ..+...+++.. ++.|||....        ..+.++| .++ .+.+.. .+..  +.-..++
T Consensus        80 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~--r~~~~~~  155 (318)
T 2woz_A           80 FFQLDNVSSEWVGLPPLPSARCLFGLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKN-LPIK--VYGHNVI  155 (318)
T ss_dssp             EEEEETTTTEEEECSCBSSCBCSCEEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECC-CSSC--EESCEEE
T ss_pred             EEEEeCCCCcEEECCCCCccccccceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCC-CCCc--ccccEEE
Confidence            77888  5666654321 11212133333 6789887432        1367788 455 555432 1222  1222333


Q ss_pred             EccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcc---eEEEecCCCEEEEEeCC-----
Q 017371          168 EASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFAN---GVALSRDEDYVVVCESW-----  239 (372)
Q Consensus       168 ~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~---gi~~~~dg~~l~v~~~~-----  239 (372)
                      . -+|+||+.-..      .     ........+++||+.+++.+.+.. +..+.   +.+.. ++ .+|+..-.     
T Consensus       156 ~-~~~~iyv~GG~------~-----~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~  220 (318)
T 2woz_A          156 S-HNGMIYCLGGK------T-----DDKKCTNRVFIYNPKKGDWKDLAP-MKTPRSMFGVAIH-KG-KIVIAGGVTEDGL  220 (318)
T ss_dssp             E-ETTEEEEECCE------E-----SSSCBCCCEEEEETTTTEEEEECC-CSSCCBSCEEEEE-TT-EEEEEEEEETTEE
T ss_pred             E-ECCEEEEEcCC------C-----CCCCccceEEEEcCCCCEEEECCC-CCCCcccceEEEE-CC-EEEEEcCcCCCCc
Confidence            3 67899984210      0     001124569999999998887643 22221   23332 34 57776421     


Q ss_pred             CCeEEEEEccCC
Q 017371          240 KFRCRKYWLKGE  251 (372)
Q Consensus       240 ~~~i~~~~~~g~  251 (372)
                      ...+++|++...
T Consensus       221 ~~~~~~yd~~~~  232 (318)
T 2woz_A          221 SASVEAFDLKTN  232 (318)
T ss_dssp             EEEEEEEETTTC
T ss_pred             cceEEEEECCCC
Confidence            135788887653

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=85.42  E-value=18  Score=31.57  Aligned_cols=132  Identities=13%  Similarity=0.159  Sum_probs=67.8

Q ss_pred             EEEEe--CCceEEEEecC-CCcccCeEEcCCCCEEEEeCC---------CcEEEEc-CCC-cEEEeeecCCcccccccce
Q 017371          101 IKRLQ--DGTWVNWKFID-SQTLVGLTSTKEGHLIICDNA---------NGLHKVS-EDG-VENFLSYVNGSKLRFANDV  166 (372)
Q Consensus       101 i~~~~--~g~~~~~~~~~-~~p~~gl~~d~dG~l~v~~~~---------~gv~~~~-~~g-~~~l~~~~~~~~~~~~~~l  166 (372)
                      +++++  .++++...... .+...+++.. ++.|||....         ..+.++| .++ .+.+.. .+..  +.-...
T Consensus        69 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~-~p~~--r~~~~~  144 (315)
T 4asc_A           69 FLQFDHLDSEWLGMPPLPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDP-LPYV--VYGHTV  144 (315)
T ss_dssp             EEEEETTTTEEEECCCBSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCC-CSSC--CBSCEE
T ss_pred             eEEecCCCCeEEECCCCCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCC-CCCc--ccceeE
Confidence            77788  56665543211 1111133333 6788887531         2377888 455 554432 1221  122223


Q ss_pred             EEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcc---eEEEecCCCEEEEEeCCC---
Q 017371          167 VEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFAN---GVALSRDEDYVVVCESWK---  240 (372)
Q Consensus       167 ~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~---gi~~~~dg~~l~v~~~~~---  240 (372)
                       +.-+++||+.-...           ........+++||+.+.+.+.+.. +..+.   ..+.. ++ .+|+..-.+   
T Consensus       145 -~~~~~~iyv~GG~~-----------~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~~-~~-~iyv~GG~~~~~  209 (315)
T 4asc_A          145 -LSHMDLVYVIGGKG-----------SDRKCLNKMCVYDPKKFEWKELAP-MQTARSLFGATVH-DG-RIIVAAGVTDTG  209 (315)
T ss_dssp             -EEETTEEEEECCBC-----------TTSCBCCCEEEEETTTTEEEECCC-CSSCCBSCEEEEE-TT-EEEEEEEECSSS
T ss_pred             -EEECCEEEEEeCCC-----------CCCcccceEEEEeCCCCeEEECCC-CCCchhceEEEEE-CC-EEEEEeccCCCC
Confidence             33578899852110           011234579999999888877643 22221   22222 44 577764221   


Q ss_pred             --CeEEEEEccCC
Q 017371          241 --FRCRKYWLKGE  251 (372)
Q Consensus       241 --~~i~~~~~~g~  251 (372)
                        +.+++|++...
T Consensus       210 ~~~~~~~yd~~~~  222 (315)
T 4asc_A          210 LTSSAEVYSITDN  222 (315)
T ss_dssp             EEEEEEEEETTTT
T ss_pred             ccceEEEEECCCC
Confidence              25888887653

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=85.05  E-value=3.5  Score=39.94  Aligned_cols=84  Identities=13%  Similarity=0.092  Sum_probs=57.3

Q ss_pred             eEEEEeCCC-----CeEEEEeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccC------CCC-cce-eeeccC-CCC
Q 017371          200 QLLKYDPSS-----NITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKG------ERK-GKL-ETFAEN-LPG  265 (372)
Q Consensus       200 ~v~~~d~~t-----~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g------~~~-~~~-~~~~~~-~~g  265 (372)
                      ++-.+|+..     .....+...-..|.|+.++|||++++++.-....+..|+.+-      .++ ... ....+- +.-
T Consensus       299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~Gl  378 (638)
T 3sbq_A          299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGL  378 (638)
T ss_dssp             CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCS
T ss_pred             CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCC
Confidence            466777754     134444455678999999999999999999999999998752      111 111 111111 112


Q ss_pred             CCceeEEcCCCCEEEEEe
Q 017371          266 APDNINLAPDGTFWIAII  283 (372)
Q Consensus       266 ~p~~i~~d~~G~lwva~~  283 (372)
                      .|--.++|.+|+.|.+..
T Consensus       379 GPlHt~Fd~~G~aYTtlf  396 (638)
T 3sbq_A          379 GPLHTTFDGRGNAYTTLF  396 (638)
T ss_dssp             CEEEEEECSSSEEEEEET
T ss_pred             cccEEEECCCCceEeeee
Confidence            478899999999999985

>3s9j_A Member of DUF4221 family; 6-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.75A {Bacteroides vulgatus}

Probab=84.37  E-value=20  Score=32.78  Aligned_cols=101  Identities=14%  Similarity=0.098  Sum_probs=62.6

Q ss_pred             ecCCCEEEEEeCCCC--eEEEEEccCCCCcceeeeccCCC---CCCc-eeEEcCCCCEEEEEecCchhHHHHhhcchhHH
Q 017371          227 SRDEDYVVVCESWKF--RCRKYWLKGERKGKLETFAENLP---GAPD-NINLAPDGTFWIAIIKLDARRMKILNSSKLIK  300 (372)
Q Consensus       227 ~~dg~~l~v~~~~~~--~i~~~~~~g~~~~~~~~~~~~~~---g~p~-~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r  300 (372)
                      +.+..+|+..+...+  .|..|+++..+....-.+-...|   +.+. ++.+-.+..||+.+..                
T Consensus        36 ~~~k~yL~~~N~~~~~~~i~~iDL~~~kl~k~i~~ekEGPNgi~~~~~~~~i~~~DsI~i~~~~----------------   99 (369)
T 3s9j_A           36 ENGKEYLHFENTQKSLYDIVIFDIENQQIAKRIPLHKTGPNGLPAVFGSRPSPDSQYILVAQNN----------------   99 (369)
T ss_dssp             ETTEEEEEEEECSTTCCEEEEEETTTTEEEEEEECBSSSTTBCTTCCCEEESSSTTSEEEEEGG----------------
T ss_pred             cCCcEEEEEeCCCCCcCcEEEEECCCCceeeeeccccCCCCCcccceeeEEecCCCEEEEEeCC----------------
Confidence            334468888887777  99999998654443322221111   2342 3656678889999876                


Q ss_pred             HHHHhcCccccccccCCCceEEEEECCCCcEEEEEECCCCC-eecc-------ceeeEEECCEEEEEeC
Q 017371          301 HVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQ-LMSF-------VTSGLQVDNHLYVISL  361 (372)
Q Consensus       301 ~~~~~~p~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~-~~~~-------~t~~~~~~g~L~igs~  361 (372)
                                        ..+|+.+|.+|+++..+.-.... .+..       -.-+...++.|+++..
T Consensus       100 ------------------~~~i~l~n~~G~~~~k~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~  150 (369)
T 3s9j_A          100 ------------------ISRLSSINSQGEIIRNYNFQTPEGRFTPLSFGSYYNAPAFIKDSCIFLRQE  150 (369)
T ss_dssp             ------------------GTEEEEECTTCCEEEEEECCCTTSCCCCCCCBTTTTBCCEEETTEEEEECC
T ss_pred             ------------------cceEEEECCCceEEEEEecCCCccccccccccccccCcceecCceEEEecc
Confidence                              35899999999999887553321 1221       1233445667887643

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=83.91  E-value=26  Score=32.17  Aligned_cols=167  Identities=11%  Similarity=0.074  Sum_probs=86.8

Q ss_pred             CCccEEEcCCCcEEEEe-cCCeEEEEe--CCc---------eE--EEEecCCCcccCeEEcCCC-CEEEEeCCCcEEEEc
Q 017371           80 HPEDASMDKNGVIYTAT-RDGWIKRLQ--DGT---------WV--NWKFIDSQTLVGLTSTKEG-HLIICDNANGLHKVS  144 (372)
Q Consensus        80 ~p~~i~~d~~G~l~v~~-~~g~i~~~~--~g~---------~~--~~~~~~~~p~~gl~~d~dG-~l~v~~~~~gv~~~~  144 (372)
                      ....+++.+.+.++++. .+ .+..++  +.+         .+  ......+ +. .+++  || .|+|+ .+.+|..++
T Consensus        39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~-~l~f--d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VI-FVCF--HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EE-EEEE--ETTEEEEE-ESSEEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-ee-EEEE--CCCEEEEE-cCCcEEEEE
Confidence            45668888766665554 55 466576  211         11  1222233 77 9999  55 56776 456788888


Q ss_pred             -CCC--cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCc
Q 017371          145 -EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA  221 (372)
Q Consensus       145 -~~g--~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~  221 (372)
                       .+-  ..... ....    ..+++..-+. ++.+.                  ..+|.|+.+|.++++.+.+.   ...
T Consensus       113 v~sl~~~~~~~-~~~~----~v~~i~~~~p-~~av~------------------~~dG~L~v~dl~~~~~~~~~---~~V  165 (388)
T 1xip_A          113 LEELSEFRTVT-SFEK----PVFQLKNVNN-TLVIL------------------NSVNDLSALDLRTKSTKQLA---QNV  165 (388)
T ss_dssp             SSSTTCEEEEE-ECSS----CEEEEEECSS-EEEEE------------------ETTSEEEEEETTTCCEEEEE---ESE
T ss_pred             chhhhccCccc-eeec----ceeeEEecCC-CEEEE------------------ECCCCEEEEEccCCcccccc---CCc
Confidence             332  11111 1110    1123222221 23332                  24678888888766655433   244


Q ss_pred             ceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeec------cC--CCCCCceeEEcCCCCEEEEE
Q 017371          222 NGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFA------EN--LPGAPDNINLAPDGTFWIAI  282 (372)
Q Consensus       222 ~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~------~~--~~g~p~~i~~d~~G~lwva~  282 (372)
                      ..++|+|+|  +.+. ..++.+..|.+++........+.      +.  ....+..|..-+++.+.++-
T Consensus       166 s~v~WSpkG--~~vg-~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y  231 (388)
T 1xip_A          166 TSFDVTNSQ--LAVL-LKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  231 (388)
T ss_dssp             EEEEECSSE--EEEE-ETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             eEEEEcCCc--eEEE-EcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence            579999999  3333 34566888887664321122221      10  11234556667766555543

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=83.11  E-value=22  Score=30.67  Aligned_cols=142  Identities=13%  Similarity=0.135  Sum_probs=74.2

Q ss_pred             CCcEEEEec------CCeEEEEe--CCceEEEEecC-CCcccCeEEcCCCCEEEEeCC------CcEEEEc-CCC-cEEE
Q 017371           89 NGVIYTATR------DGWIKRLQ--DGTWVNWKFID-SQTLVGLTSTKEGHLIICDNA------NGLHKVS-EDG-VENF  151 (372)
Q Consensus        89 ~G~l~v~~~------~g~i~~~~--~g~~~~~~~~~-~~p~~gl~~d~dG~l~v~~~~------~gv~~~~-~~g-~~~l  151 (372)
                      ++.||+...      ...++++|  .++++...... .+...+.+. -++.||+....      ..+.++| .++ .+.+
T Consensus       112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~  190 (301)
T 2vpj_A          112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV-ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNV  190 (301)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE-ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEE
T ss_pred             CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE-ECCEEEEECCCCCCcccceEEEEeCCCCcEEeC
Confidence            678887641      23588888  66777665322 222212333 36889987432      3478888 555 5555


Q ss_pred             eeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcc---eEEEec
Q 017371          152 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFAN---GVALSR  228 (372)
Q Consensus       152 ~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~---gi~~~~  228 (372)
                      ... +..  +.-..++ .-+++||+.-...            .......+++||+++++.+.+.. +..+.   +.+.. 
T Consensus       191 ~~~-p~~--r~~~~~~-~~~~~i~v~GG~~------------~~~~~~~v~~yd~~~~~W~~~~~-~p~~r~~~~~~~~-  252 (301)
T 2vpj_A          191 TPM-ATK--RSGAGVA-LLNDHIYVVGGFD------------GTAHLSSVEAYNIRTDSWTTVTS-MTTPRCYVGATVL-  252 (301)
T ss_dssp             CCC-SSC--CBSCEEE-EETTEEEEECCBC------------SSSBCCCEEEEETTTTEEEEECC-CSSCCBSCEEEEE-
T ss_pred             CCC-Ccc--cccceEE-EECCEEEEEeCCC------------CCcccceEEEEeCCCCcEEECCC-CCCcccceeEEEE-
Confidence            322 211  1112222 2468899852210            01114579999999998887643 22221   22222 


Q ss_pred             CCCEEEEEeCCC-----CeEEEEEccC
Q 017371          229 DEDYVVVCESWK-----FRCRKYWLKG  250 (372)
Q Consensus       229 dg~~l~v~~~~~-----~~i~~~~~~g  250 (372)
                      ++ .+|+..-.+     ..+++|++..
T Consensus       253 ~~-~i~v~GG~~~~~~~~~v~~yd~~~  278 (301)
T 2vpj_A          253 RG-RLYAIAGYDGNSLLSSIECYDPII  278 (301)
T ss_dssp             TT-EEEEECCBCSSSBEEEEEEEETTT
T ss_pred             CC-EEEEEcCcCCCcccccEEEEcCCC
Confidence            33 476664221     3466666543

>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}

Probab=82.50  E-value=21  Score=36.09  Aligned_cols=151  Identities=11%  Similarity=0.031  Sum_probs=78.4

Q ss_pred             ccEEEcC--CCcEEEEecCCeEEEEe-CC-ceEEEEecCC----CcccCeEEcC--CCCEEEEeCCCcEEEEcCCC--cE
Q 017371           82 EDASMDK--NGVIYTATRDGWIKRLQ-DG-TWVNWKFIDS----QTLVGLTSTK--EGHLIICDNANGLHKVSEDG--VE  149 (372)
Q Consensus        82 ~~i~~d~--~G~l~v~~~~g~i~~~~-~g-~~~~~~~~~~----~p~~gl~~d~--dG~l~v~~~~~gv~~~~~~g--~~  149 (372)
                      ..|++|+  .+.+|+++ +|.|++-. .| .++.+.....    ... -|.+.+  +++||++....+|++-+..|  .+
T Consensus       591 ~~i~~d~~~~~~~y~g~-~g~v~~S~DgG~tW~~~~~~lp~~~~~~~-~i~~~~~~~~~l~~~~~~~~l~~S~D~G~tW~  668 (763)
T 3a0f_A          591 TGIAADRVQANTFYVYV-EGDFFVSTDGGKSYTKKGNGLPCCWTYTG-TPVTSNLRAGELWVSVKGVGIYHSTDFGNTFT  668 (763)
T ss_dssp             SCEEECSSSTTCEEEEE-TTEEEEESSTTSBCEEECBTSCCSSCCCE-EEEECSSSTTCEEEEETTTEEEEESSTTSBCE
T ss_pred             ceEEEeccCCCEEEEEc-CCCEEEEeCCCcCccccccCCCcccCccc-cEEECCCCCCcEEEEcCCCeEEEEcCCCCCce
Confidence            3677775  45799985 67788776 33 4655532211    111 155554  67899998766788876555  55


Q ss_pred             EEeeecCCcccc--cccceEEc-c-CCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeC---CccCcc
Q 017371          150 NFLSYVNGSKLR--FANDVVEA-S-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD---GFYFAN  222 (372)
Q Consensus       150 ~l~~~~~~~~~~--~~~~l~~d-~-dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~---~~~~~~  222 (372)
                      .+.. .+.....  .-.+++.. . ...||+.-..             .....+.||+=+-.....+.+.+   .+..+.
T Consensus       669 ~~~~-~~~~~~~~~~~~g~~~~~~~~~~l~~~G~~-------------~~~~~~gl~~S~D~G~tW~~~~~~~~~~~~~~  734 (763)
T 3a0f_A          669 ALAG-SGSSLNPAVFSIGAPQTPNATETLFLWGIP-------------SASQPEGLYMSTDNGGLWTRLNDDAHNYGGAT  734 (763)
T ss_dssp             ECTT-BTTTBEEEEEEEECCSSTTSSCEEEEEEEC-------------STTSCSEEEEESSTTSCCEECSCTTCCTBCEE
T ss_pred             EccC-CCcccccceeEEeeecCCCCCceEEEEEEc-------------ccCCCcEEEEeCCCCCCcEeccCccccCCCcc
Confidence            5431 1111000  00122222 2 3468874200             01135678877644445555542   222233


Q ss_pred             eEEEecCC-CEEEEEeCCCCeEEEEEcc
Q 017371          223 GVALSRDE-DYVVVCESWKFRCRKYWLK  249 (372)
Q Consensus       223 gi~~~~dg-~~l~v~~~~~~~i~~~~~~  249 (372)
                      .++++|.. ..||++.. +..|+.-++.
T Consensus       735 ~i~~~p~~~~~v~~~T~-GrGi~~g~~~  761 (763)
T 3a0f_A          735 VISGDPRIYGRVYIGMN-GRGIICAQAL  761 (763)
T ss_dssp             EEEECTTSTTEEEEEEB-SSCEEEEESC
T ss_pred             eEEeCCCCCCEEEEeCC-CCeEEEEecC
Confidence            46777743 35777654 4457665543

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=81.74  E-value=26  Score=30.54  Aligned_cols=136  Identities=14%  Similarity=0.012  Sum_probs=69.5

Q ss_pred             CeEEEEe--CCceEEEEecC--CCcccCeEEcCCCCEEEEeCC--------C----cEEEEc-CCC-cEEEeeecCCccc
Q 017371           99 GWIKRLQ--DGTWVNWKFID--SQTLVGLTSTKEGHLIICDNA--------N----GLHKVS-EDG-VENFLSYVNGSKL  160 (372)
Q Consensus        99 g~i~~~~--~g~~~~~~~~~--~~p~~gl~~d~dG~l~v~~~~--------~----gv~~~~-~~g-~~~l~~~~~~~~~  160 (372)
                      ..++++|  .+++.....+.  .+...+++ ..++.||+....        .    -+.++| .++ .+.+.. .+..  
T Consensus        13 ~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~-~p~~--   88 (315)
T 4asc_A           13 EGAVAYDPAANECYCASLSSQVPKNHVSLV-TKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP-LPSP--   88 (315)
T ss_dssp             TEEEEEETTTTEEEEEECCCCSCSSEEEEE-CTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC-BSSC--
T ss_pred             CceEEECCCCCeEecCCCCCCCCccceEEE-EECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC-CCcc--
Confidence            4688888  66666522221  22221223 347888887541        0    166777 445 544432 1222  


Q ss_pred             ccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcc---eEEEecCCCEEEEEe
Q 017371          161 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFAN---GVALSRDEDYVVVCE  237 (372)
Q Consensus       161 ~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~---gi~~~~dg~~l~v~~  237 (372)
                      +.-..++. -+++||+.-..      ...   ........+++||+.+++.+.+.. +..+.   ..+. -++ .+|+..
T Consensus        89 r~~~~~~~-~~~~lyv~GG~------~~~---~~~~~~~~~~~~d~~~~~W~~~~~-~p~~r~~~~~~~-~~~-~iyv~G  155 (315)
T 4asc_A           89 RCLFGLGE-ALNSIYVVGGR------EIK---DGERCLDSVMCYDRLSFKWGESDP-LPYVVYGHTVLS-HMD-LVYVIG  155 (315)
T ss_dssp             EESCEEEE-ETTEEEEECCE------ESS---TTCCBCCCEEEEETTTTEEEECCC-CSSCCBSCEEEE-ETT-EEEEEC
T ss_pred             hhceeEEE-ECCEEEEEeCC------cCC---CCCcccceEEEECCCCCcEeECCC-CCCcccceeEEE-ECC-EEEEEe
Confidence            12223333 37889985210      000   001234569999999888877543 22221   2222 334 588775


Q ss_pred             CC------CCeEEEEEccCC
Q 017371          238 SW------KFRCRKYWLKGE  251 (372)
Q Consensus       238 ~~------~~~i~~~~~~g~  251 (372)
                      -.      .+.+++|++...
T Consensus       156 G~~~~~~~~~~~~~yd~~~~  175 (315)
T 4asc_A          156 GKGSDRKCLNKMCVYDPKKF  175 (315)
T ss_dssp             CBCTTSCBCCCEEEEETTTT
T ss_pred             CCCCCCcccceEEEEeCCCC
Confidence            32      246899998653

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=80.85  E-value=27  Score=30.28  Aligned_cols=133  Identities=17%  Similarity=0.204  Sum_probs=68.5

Q ss_pred             CeEEEEe--CCceEEEEec-CCCcccCeEEcCCCCEEEEeCC----------CcEEEEc-CCC-cEEEeeecCCcccccc
Q 017371           99 GWIKRLQ--DGTWVNWKFI-DSQTLVGLTSTKEGHLIICDNA----------NGLHKVS-EDG-VENFLSYVNGSKLRFA  163 (372)
Q Consensus        99 g~i~~~~--~g~~~~~~~~-~~~p~~gl~~d~dG~l~v~~~~----------~gv~~~~-~~g-~~~l~~~~~~~~~~~~  163 (372)
                      ..+++++  .++++..... ..+...+++. -++.||+....          ..+.++| .++ .+.+... +..  +.-
T Consensus        39 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~-p~~--r~~  114 (308)
T 1zgk_A           39 SYLEAYNPSNGTWLRLADLQVPRSGLAGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPM-SVP--RNR  114 (308)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCC-SSC--CBT
T ss_pred             ceEEEEcCCCCeEeECCCCCcccccceEEE-ECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCC-CcC--ccc
Confidence            3577888  5666654321 1121213333 36788887432          2477788 445 4544321 211  111


Q ss_pred             cceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcc---eEEEecCCCEEEEEeCC-
Q 017371          164 NDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFAN---GVALSRDEDYVVVCESW-  239 (372)
Q Consensus       164 ~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~---gi~~~~dg~~l~v~~~~-  239 (372)
                      ..++. -+|+||+.-..            ........+++||+.+++.+.+.. +..+.   ..+..  ++.+|+..-. 
T Consensus       115 ~~~~~-~~~~iyv~GG~------------~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~~--~~~iyv~GG~~  178 (308)
T 1zgk_A          115 IGVGV-IDGHIYAVGGS------------HGCIHHNSVERYEPERDEWHLVAP-MLTRRIGVGVAVL--NRLLYAVGGFD  178 (308)
T ss_dssp             CEEEE-ETTEEEEECCE------------ETTEECCCEEEEETTTTEEEECCC-CSSCCBSCEEEEE--TTEEEEECCBC
T ss_pred             cEEEE-ECCEEEEEcCC------------CCCcccccEEEECCCCCeEeECCC-CCccccceEEEEE--CCEEEEEeCCC
Confidence            22333 47889985210            001123469999999888877643 22221   22332  3458887421 


Q ss_pred             ----CCeEEEEEccCC
Q 017371          240 ----KFRCRKYWLKGE  251 (372)
Q Consensus       240 ----~~~i~~~~~~g~  251 (372)
                          .+.+++|++...
T Consensus       179 ~~~~~~~~~~yd~~~~  194 (308)
T 1zgk_A          179 GTNRLNSAECYYPERN  194 (308)
T ss_dssp             SSCBCCCEEEEETTTT
T ss_pred             CCCcCceEEEEeCCCC
Confidence                246899998653

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=80.52  E-value=35  Score=31.30  Aligned_cols=127  Identities=9%  Similarity=0.107  Sum_probs=75.0

Q ss_pred             CCccEEEcCCCcEEEEecCCeEEEEe-CC--ceEEEEecCCCcccCeEEcCCCCEEEEeCCCcEEEEc-CCC-cEEEeee
Q 017371           80 HPEDASMDKNGVIYTATRDGWIKRLQ-DG--TWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENFLSY  154 (372)
Q Consensus        80 ~p~~i~~d~~G~l~v~~~~g~i~~~~-~g--~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~-~~g-~~~l~~~  154 (372)
                      .+..+++ .+..|+++ .+|.|..|+ ..  +............ .+..-+. ++.++.....|+.++ .++ ...+.  
T Consensus        89 ~V~~l~f-d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~-~i~~~~p-~~av~~~dG~L~v~dl~~~~~~~~~--  162 (388)
T 1xip_A           89 DVIFVCF-HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVF-QLKNVNN-TLVILNSVNDLSALDLRTKSTKQLA--  162 (388)
T ss_dssp             TEEEEEE-ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEE-EEEECSS-EEEEEETTSEEEEEETTTCCEEEEE--
T ss_pred             CeeEEEE-CCCEEEEE-cCCcEEEEEchhhhccCccceeeccee-eEEecCC-CEEEEECCCCEEEEEccCCcccccc--
Confidence            4788999 44578888 778899998 22  1111111111223 4444432 366666656677777 555 43321  


Q ss_pred             cCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeE---EEEe------C---CccCcc
Q 017371          155 VNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT---TLVA------D---GFYFAN  222 (372)
Q Consensus       155 ~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~---~~~~------~---~~~~~~  222 (372)
                            ..+..+++.++| +.++                  ..+|.+..|++++++.   ..+.      +   +-....
T Consensus       163 ------~~Vs~v~WSpkG-~~vg------------------~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~  217 (388)
T 1xip_A          163 ------QNVTSFDVTNSQ-LAVL------------------LKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPL  217 (388)
T ss_dssp             ------ESEEEEEECSSE-EEEE------------------ETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEE
T ss_pred             ------CCceEEEEcCCc-eEEE------------------EcCCcEEEEcCCCccccccceecCCcccccccCCCeeEE
Confidence                  245688999999 4443                  2456777778877774   2331      1   223456


Q ss_pred             eEEEecCCCEEEEEe
Q 017371          223 GVALSRDEDYVVVCE  237 (372)
Q Consensus       223 gi~~~~dg~~l~v~~  237 (372)
                      .|.|.+++.++.+..
T Consensus       218 sI~wl~~~~flv~y~  232 (388)
T 1xip_A          218 SVTILSPQDFLAVFG  232 (388)
T ss_dssp             EEEESSSSEEEEEEE
T ss_pred             EEEEecCCeEEEEEc
Confidence            788888887666543

>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*

Probab=80.35  E-value=53  Score=33.24  Aligned_cols=150  Identities=10%  Similarity=0.136  Sum_probs=79.2

Q ss_pred             CCcccCeEEcCC--CCEEEEeCCCcEEEEcCCC--cEEEeeecCCc--ccccccceEEccC--CcEEEEeCCCCCCCccc
Q 017371          117 SQTLVGLTSTKE--GHLIICDNANGLHKVSEDG--VENFLSYVNGS--KLRFANDVVEASD--GSLYFTVSSSKYLPHEY  188 (372)
Q Consensus       117 ~~p~~gl~~d~d--G~l~v~~~~~gv~~~~~~g--~~~l~~~~~~~--~~~~~~~l~~d~d--G~i~vtd~~~~~~~~~~  188 (372)
                      ++.. +|+++|.  +.+|++....+|++-+..|  .+.+.......  ....+..|++|+.  +.+|++....  .    
T Consensus        15 g~i~-~i~~~p~~~~~~~a~~~~ggv~rS~DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~--~----   87 (789)
T 1sqj_A           15 GYIT-GIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRY--V----   87 (789)
T ss_dssp             SCEE-EEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSC--T----
T ss_pred             CcEE-EEEECCCCCCEEEEEecCCCEEEecCCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCcc--C----
Confidence            4556 8999874  6789887667888887555  44432211100  1235678899874  5788864210  0    


Q ss_pred             ccccccccCCCeEEEEeCCCCeEEEEeCCccC---------cceEEEecC-CCEEEEEeCCCCeEEEEEccCCCCcceee
Q 017371          189 CLDILEGKPHGQLLKYDPSSNITTLVADGFYF---------ANGVALSRD-EDYVVVCESWKFRCRKYWLKGERKGKLET  258 (372)
Q Consensus       189 ~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~---------~~gi~~~~d-g~~l~v~~~~~~~i~~~~~~g~~~~~~~~  258 (372)
                            ....+.|++=+-.....+.+...+..         ...++++|. .+.+|+.. ....|++ ..++.+.-+  .
T Consensus        88 ------~~~~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~-~~~gl~~-S~DgG~TW~--~  157 (789)
T 1sqj_A           88 ------GDEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGT-RTEGIWK-SSDRAKTWT--N  157 (789)
T ss_dssp             ------TSSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEEC-SSSCEEE-ESSTTSSCE--E
T ss_pred             ------CCcccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEe-ccCCEEE-ECCCCcccC--C
Confidence                  00116777765443455555432221         135888875 34566643 3345664 334433222  1


Q ss_pred             eccCCC------CCCceeEEcCC--CCEEEEEec
Q 017371          259 FAENLP------GAPDNINLAPD--GTFWIAIIK  284 (372)
Q Consensus       259 ~~~~~~------g~p~~i~~d~~--G~lwva~~~  284 (372)
                      .. ..+      .....+.+|+.  +.+|++...
T Consensus       158 ~~-~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~  190 (789)
T 1sqj_A          158 VT-SIPDAFTNGIGYTSVIFDPERNGTIYASATA  190 (789)
T ss_dssp             ET-TSCCCCSTTTCEEEEEECTTSTTCEEEEESS
T ss_pred             Cc-cCccccCCCCCeEEEEECCCCCCEEEEEEcC
Confidence            11 111      11234666753  478888753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	372
d1v04a_	340	b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PO	9e-32
d2dg1a1	319	b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus	9e-05
d2p4oa1	302	b.68.6.3 (A:4-305) Hypothetical protein All0351 ho	0.003

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 340

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

 Score =  120 bits (301), Expect = 9e-32
 Identities = 36/227 (15%), Positives = 68/227 (29%), Gaps = 19/227 (8%)

Query: 140 LHKVSEDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHG 199
                E+     L  +    L   ND+V       Y T       P+    ++  G    
Sbjct: 129 FKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWS 188

Query: 200 QLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETF 259
            +  Y P+     +VA+GF FANG+ +S D  YV + E    +   Y             
Sbjct: 189 FVTYYSPNDV--RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRV 246

Query: 260 AENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGG 319
             +     DNI++ P           +  R+   ++       +     + S        
Sbjct: 247 -LSFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAENPPGSEVLRIQDILS-------- 297

Query: 320 AHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFI 366
                  E+   +  +    G ++   T        L + ++    +
Sbjct: 298 -------EEPK-VTVVYAENGTVLQGSTVAAVYKGKLLIGTVFHKAL 336

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} Length = 319

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

 Score = 41.6 bits (96), Expect = 9e-05
 Identities = 44/244 (18%), Positives = 86/244 (35%), Gaps = 29/244 (11%)

Query: 51  PVLDEVPQPAVLSATQLQDFIKVGEGSVNHPEDASMDKNGVIY-TATRDGWIKRLQ-DGT 108
           P++ E    + L     + ++++ +  +   E  + D+ G ++     +G I ++  +  
Sbjct: 17  PIISE----SELQTITAEPWLEISKKGLQ-LEGLNFDRQGQLFLLDVFEGNIFKINPETK 71

Query: 109 WVNWKFID-SQTLVGLTSTKEGHLIICDNANG-----LHKVSEDGVENFLSYVNGSKLRF 162
            +   F+        +   K+G L +C   +      +   +E+G        + S    
Sbjct: 72  EIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYC 131

Query: 163 ANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFAN 222
            +D+V  S G  YFT                   P G +    P     T +      AN
Sbjct: 132 IDDMVFDSKGGFYFT-----------DFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVAN 180

Query: 223 GVALSRDEDYVVVCESWKFRCRKYWL-----KGERKGKLETFAENLPGAPDNINLAPDGT 277
           G+ALS DE  + V E+   R  +  L       +  G    +       PD+  +  D  
Sbjct: 181 GIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDN 240

Query: 278 FWIA 281
            ++A
Sbjct: 241 LYVA 244

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Length = 302

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

 Score = 36.9 bits (84), Expect = 0.003
 Identities = 29/204 (14%), Positives = 50/204 (24%), Gaps = 12/204 (5%)

Query: 81  PEDASMDKNGVIY-TATRDGWIKRLQDGTWVNWKFIDSQTLVGLTSTKEGHLIICDNAN- 138
            E+ +   +G I+ T    G I  +               + GL  T  G L+       
Sbjct: 30  LENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNAD 89

Query: 139 GLHKVSEDGVENFLS-YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKP 197
            +  VS    +  +   +      F N +   SD       S        Y   I     
Sbjct: 90  SIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADS--------YRGAIWLIDV 141

Query: 198 HGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLE 257
                       +         F     L R  +++ V  + K    +           E
Sbjct: 142 VQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIP-VDSTDKPGE 200

Query: 258 TFAENLPGAPDNINLAPDGTFWIA 281
                     D+     +G  + A
Sbjct: 201 PEIFVEQTNIDDFAFDVEGNLYGA 224

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	372
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.97
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.95
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.95
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	99.94
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.92
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.92
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.86
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.84
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.68
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	99.65
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.64
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	99.63
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.62
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	99.62
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	99.59
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.48
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.44
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.39
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.25
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.17
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	99.16
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.14
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.06
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.01
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.0
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.97
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	98.93
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	98.89
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	98.83
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	98.82
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.76
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.74
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	98.71
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.63
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	98.55
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.52
d1tbga_	340	beta1-subunit of the signal-transducing G protein	98.51
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.5
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.48
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.46
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.44
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	98.4
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	98.36
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	98.32
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.28
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	98.23
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	98.19
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.18
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	98.18
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	98.15
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	98.05
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.04
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.02
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.02
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	97.96
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	97.88
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	97.88
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	97.82
d1tbga_	340	beta1-subunit of the signal-transducing G protein	97.8
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	97.59
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	97.57
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.48
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	97.2
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.15
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.03
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	96.94
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	96.89
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.87
d1tl2a_	235	Tachylectin-2 {Japanese horseshoe crab (Tachypleus	96.8
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	96.8
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.79
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	96.71
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	96.39
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	96.02
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	96.01
d1tl2a_	235	Tachylectin-2 {Japanese horseshoe crab (Tachypleus	95.67
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	95.65
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	95.53
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	95.42
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	94.94
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.65
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	94.4
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	93.92
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	93.42
d2ebsa1	427	Oligoxyloglucan reducing end-specific cellobiohydr	92.58
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	92.55
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	92.18
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	92.13
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	91.78
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	91.55
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	91.52
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	90.02
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	90.0
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	89.82
d2ebsa1	427	Oligoxyloglucan reducing end-specific cellobiohydr	89.49
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	83.15
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	80.97

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.97  E-value=8.8e-30  Score=232.92  Aligned_cols=261  Identities=21%  Similarity=0.299  Sum_probs=200.3

Q ss_pred             CceEecCCCCCCCccEEEcCCCcEEEEec--------CCeEEEEe--CCceEEEEe-----cCCCcccCeEEcCCCC-EE
Q 017371           69 DFIKVGEGSVNHPEDASMDKNGVIYTATR--------DGWIKRLQ--DGTWVNWKF-----IDSQTLVGLTSTKEGH-LI  132 (372)
Q Consensus        69 ~~~~~~~g~~~~p~~i~~d~~G~l~v~~~--------~g~i~~~~--~g~~~~~~~-----~~~~p~~gl~~d~dG~-l~  132 (372)
                      ..+++.++ +.+||++++|++|+||+.+.        +|+|++++  ++....+..     ..+.|. |++++++|+ ||
T Consensus         9 ~~~~v~~~-~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~-Gl~~~~dg~~l~   86 (314)
T d1pjxa_           9 LFTKVTED-IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPA-GCQCDRDANQLF   86 (314)
T ss_dssp             CCEEEECC-CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEE-EEEECSSSSEEE
T ss_pred             ceEEeecC-CCCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcce-eEEEeCCCCEEE
Confidence            46678777 89999999999999999863        46899999  455554432     235688 999999985 88


Q ss_pred             EEeCCCcEEEEcCCC-cEE-EeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCe
Q 017371          133 ICDNANGLHKVSEDG-VEN-FLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI  210 (372)
Q Consensus       133 v~~~~~gv~~~~~~g-~~~-l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~  210 (372)
                      +++..+++.+++.+| ... +.....+.+++.||++++|++|+|||||++..+......  .......|+||+++++ ++
T Consensus        87 vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~--~~~~~~~G~v~~~~~d-g~  163 (314)
T d1pjxa_          87 VADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYT--RSMQEKFGSIYCFTTD-GQ  163 (314)
T ss_dssp             EEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCC--BTTSSSCEEEEEECTT-SC
T ss_pred             EEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCccccccc--ceeccCCceEEEEeec-Cc
Confidence            888778999999766 443 334456677788999999999999999986443322221  2223467899999987 67


Q ss_pred             EEEEeCCccCcceEEEecCCC----EEEEEeCCCCeEEEEEccCC-CCcceeeecc---CCCCCCceeEEcCCCCEEEEE
Q 017371          211 TTLVADGFYFANGVALSRDED----YVVVCESWKFRCRKYWLKGE-RKGKLETFAE---NLPGAPDNINLAPDGTFWIAI  282 (372)
Q Consensus       211 ~~~~~~~~~~~~gi~~~~dg~----~l~v~~~~~~~i~~~~~~g~-~~~~~~~~~~---~~~g~p~~i~~d~~G~lwva~  282 (372)
                      ...+..++..|||++++++++    .||++++...+|++|+++.. .....+.+..   ...+.|+||++|++|+|||++
T Consensus       164 ~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~  243 (314)
T d1pjxa_         164 MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVAN  243 (314)
T ss_dssp             EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEE
T ss_pred             eeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEE
Confidence            777788899999999999875    79999999999999998643 3333344432   123469999999999999999


Q ss_pred             ecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEECCCC-cEEEEEECCCCCeeccceeeEEE-C-CEEEEE
Q 017371          283 IKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDG-TIIRNLVDPTGQLMSFVTSGLQV-D-NHLYVI  359 (372)
Q Consensus       283 ~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~g-~~~~~~~~~~g~~~~~~t~~~~~-~-g~L~ig  359 (372)
                      +.                                  .+.|.+|+++| +.+..+..+..    .++++++. + ++|||.
T Consensus       244 ~~----------------------------------~g~I~~~dp~~g~~~~~i~~p~~----~~t~~afg~d~~~lyVt  285 (314)
T d1pjxa_         244 WG----------------------------------SSHIEVFGPDGGQPKMRIRCPFE----KPSNLHFKPQTKTIFVT  285 (314)
T ss_dssp             ET----------------------------------TTEEEEECTTCBSCSEEEECSSS----CEEEEEECTTSSEEEEE
T ss_pred             cC----------------------------------CCEEEEEeCCCCEEEEEEECCCC----CEEEEEEeCCCCEEEEE
Confidence            87                                  57899999884 55566666532    46778885 3 479999


Q ss_pred             eCCCCeEEEEeCC
Q 017371          360 SLTSNFIGKVQLS  372 (372)
Q Consensus       360 s~~~~~i~~~~~~  372 (372)
                      +..++.|.++++.
T Consensus       286 ~~~~g~i~~~~~~  298 (314)
T d1pjxa_         286 EHENNAVWKFEWQ  298 (314)
T ss_dssp             ETTTTEEEEEECS
T ss_pred             ECCCCcEEEEECC
Confidence            9999999999863

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.95  E-value=2.1e-26  Score=210.86  Aligned_cols=234  Identities=21%  Similarity=0.301  Sum_probs=178.0

Q ss_pred             CCccEEEcCCCcEEEEe-cCCeEEEEe-CCc-e-EEEEecCCCcccCeEEcCCCCEEEEeCC-----CcEEEEcCCC--c
Q 017371           80 HPEDASMDKNGVIYTAT-RDGWIKRLQ-DGT-W-VNWKFIDSQTLVGLTSTKEGHLIICDNA-----NGLHKVSEDG--V  148 (372)
Q Consensus        80 ~p~~i~~d~~G~l~v~~-~~g~i~~~~-~g~-~-~~~~~~~~~p~~gl~~d~dG~l~v~~~~-----~gv~~~~~~g--~  148 (372)
                      ..|++++|++|+||+.+ .+|+|++++ +++ . ..+....+.|. ||++++||+|||++..     .+++.++.++  .
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~-gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~  119 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPA-AIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL  119 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEE-EEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCee-EEEECCCCCEEEEecCCCccceeEEEEcCCCcee
Confidence            56999999999999999 789999999 553 3 34455667899 9999999999999743     3578888443  5


Q ss_pred             EEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEec
Q 017371          149 ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSR  228 (372)
Q Consensus       149 ~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~  228 (372)
                      ..+...  ......+|+++++++|++|++|...           ......+.+++++++.+.++.+..++..|||+++++
T Consensus       120 ~~~~~~--~~~~~~~nd~~~d~~G~l~vtd~~~-----------~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~  186 (319)
T d2dg1a1         120 QDIIED--LSTAYCIDDMVFDSKGGFYFTDFRG-----------YSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALST  186 (319)
T ss_dssp             EEEECS--SSSCCCEEEEEECTTSCEEEEECCC-----------BTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECT
T ss_pred             eeeccC--CCcccCCcceeEEeccceeeccccc-----------ccccCcceeEEEecccceeEEEeeccceeeeeeecc
Confidence            544332  2234578999999999999998641           112356789999998778888888899999999999


Q ss_pred             CCCEEEEEeCCCCeEEEEEccCCC-Ccce---e-eeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHH
Q 017371          229 DEDYVVVCESWKFRCRKYWLKGER-KGKL---E-TFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVL  303 (372)
Q Consensus       229 dg~~l~v~~~~~~~i~~~~~~g~~-~~~~---~-~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~  303 (372)
                      |++.||++++..++|++|+++... ....   . .......+.|+||++|++|+|||+++.                   
T Consensus       187 dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~-------------------  247 (319)
T d2dg1a1         187 DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYG-------------------  247 (319)
T ss_dssp             TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEET-------------------
T ss_pred             ccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcC-------------------
Confidence            999999999999999999986432 1111   1 111122345999999999999999998                   


Q ss_pred             HhcCccccccccCCCceEEEEECCCCcEEEEEECCCCC--eeccceeeEEEC--CEEEEEeC
Q 017371          304 AAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQ--LMSFVTSGLQVD--NHLYVISL  361 (372)
Q Consensus       304 ~~~p~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~--~~~~~t~~~~~~--g~L~igs~  361 (372)
                                     .+.|.+|+++|+++..+..|...  ....++++...+  ..+|+.+.
T Consensus       248 ---------------~g~V~~~~p~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         248 ---------------QGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             ---------------TTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             ---------------CCEEEEECCCCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence                           67999999999999999887531  133466777753  56777763

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.95  E-value=4.3e-25  Score=199.69  Aligned_cols=227  Identities=17%  Similarity=0.183  Sum_probs=180.7

Q ss_pred             ccEEEc-CCCcEEEEe-cCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCCEEEEeCCCcEEEEc-CCC-cEEEeeec
Q 017371           82 EDASMD-KNGVIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENFLSYV  155 (372)
Q Consensus        82 ~~i~~d-~~G~l~v~~-~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~-~~g-~~~l~~~~  155 (372)
                      |+...| .+|.||+.| .+++|++++  +++.+.+.. ...+. +++.+++|+||++.. +|+++++ .+| .+.+....
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~~~-~~~~~-~i~~~~dg~l~va~~-~gl~~~d~~tg~~~~l~~~~   97 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKTVHAL-PFMGS-ALAKISDSKQLIASD-DGLFLRDTATGVLTLHAELE   97 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEEC-SSCEE-EEEEEETTEEEEEET-TEEEEEETTTCCEEEEECSS
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEEEEEC-CCCcE-EEEEecCCCEEEEEe-CccEEeecccceeeEEeeee
Confidence            555666 478999999 789999999  556665543 45667 899999999999974 6999999 667 77776655


Q ss_pred             CCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEE
Q 017371          156 NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVV  235 (372)
Q Consensus       156 ~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v  235 (372)
                      .+.+...+|++.+|++|++|+++...           ......+.+|+++.  ++.+.+..++..|||+++++|++.+|+
T Consensus        98 ~~~~~~~~nd~~vd~~G~iw~~~~~~-----------~~~~~~g~l~~~~~--g~~~~~~~~~~~~Ng~~~s~d~~~l~~  164 (295)
T d2ghsa1          98 SDLPGNRSNDGRMHPSGALWIGTMGR-----------KAETGAGSIYHVAK--GKVTKLFADISIPNSICFSPDGTTGYF  164 (295)
T ss_dssp             TTCTTEEEEEEEECTTSCEEEEEEET-----------TCCTTCEEEEEEET--TEEEEEEEEESSEEEEEECTTSCEEEE
T ss_pred             cCCCcccceeeEECCCCCEEEEeccc-----------cccccceeEeeecC--CcEEEEeeccCCcceeeecCCCceEEE
Confidence            55566789999999999999997631           11234567888864  788888888999999999999999999


Q ss_pred             EeCCCCeEEEEEccCC---CCcceeeecc--CCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCccc
Q 017371          236 CESWKFRCRKYWLKGE---RKGKLETFAE--NLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLF  310 (372)
Q Consensus       236 ~~~~~~~i~~~~~~g~---~~~~~~~~~~--~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~  310 (372)
                      +++..++|++|+++..   ...+...+.+  ...+.|+|+++|++|+|||+.+.                          
T Consensus       165 ~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~--------------------------  218 (295)
T d2ghsa1         165 VDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG--------------------------  218 (295)
T ss_dssp             EETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET--------------------------
T ss_pred             eecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeC--------------------------
Confidence            9999999999998743   2233334432  34567999999999999999987                          


Q ss_pred             cccccCCCceEEEEECCCCcEEEEEECCCCCeeccceeeEEEC---CEEEEEeCC
Q 017371          311 SQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVD---NHLYVISLT  362 (372)
Q Consensus       311 ~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~---g~L~igs~~  362 (372)
                              .+.|.+|+++|+.+..+..|..    .+|++++.+   ++|||.|..
T Consensus       219 --------~g~V~~~dp~G~~~~~i~lP~~----~~T~~~FGG~d~~~LyvTta~  261 (295)
T d2ghsa1         219 --------EGAVDRYDTDGNHIARYEVPGK----QTTCPAFIGPDASRLLVTSAR  261 (295)
T ss_dssp             --------TTEEEEECTTCCEEEEEECSCS----BEEEEEEESTTSCEEEEEEBC
T ss_pred             --------CCceEEecCCCcEeeEecCCCC----ceEEEEEeCCCCCEEEEEECC
Confidence                    5789999999999999998853    478888863   789999875

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.94  E-value=1.9e-24  Score=198.58  Aligned_cols=276  Identities=19%  Similarity=0.273  Sum_probs=194.0

Q ss_pred             CceEecCCCCCCCccEEEcCCCcEEEEec-------------CCeEEEEe--C--CceEEEEec-------CCCcccCeE
Q 017371           69 DFIKVGEGSVNHPEDASMDKNGVIYTATR-------------DGWIKRLQ--D--GTWVNWKFI-------DSQTLVGLT  124 (372)
Q Consensus        69 ~~~~~~~g~~~~p~~i~~d~~G~l~v~~~-------------~g~i~~~~--~--g~~~~~~~~-------~~~p~~gl~  124 (372)
                      .++.+ +|...+||+|+++++|.+|+++.             .|.|+.+|  +  .+...+...       ...|+ ||.
T Consensus        26 ~C~~i-~g~~~G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~Ph-Gi~  103 (340)
T d1v04a_          26 NCNLV-KGIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPH-GIS  103 (340)
T ss_dssp             SCEEC-TTCCSCCCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEE-EEE
T ss_pred             CceEc-CCCCCCcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceecc-cee
Confidence            45555 46567999999999999998863             38888888  2  233333222       13678 876


Q ss_pred             E--cCCC--CEEEEeCC-C----cEEEEcCCC-cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCccccccccc
Q 017371          125 S--TKEG--HLIICDNA-N----GLHKVSEDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILE  194 (372)
Q Consensus       125 ~--d~dG--~l~v~~~~-~----gv~~~~~~g-~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~  194 (372)
                      +  +++|  .|+|.++. .    .++.++.++ ...+......+.+..+|++++..+|.+|+|+.+.....-....+...
T Consensus       104 l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~  183 (340)
T d1v04a_         104 TFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHL  183 (340)
T ss_dssp             EEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHT
T ss_pred             EEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhh
Confidence            5  5667  48888763 1    256666444 44444555666778999999999999999986532211111223344


Q ss_pred             ccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcC
Q 017371          195 GKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAP  274 (372)
Q Consensus       195 ~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~  274 (372)
                      ..+.+.++.+|+  ++.+++++++.+||||++++|+++|||+++...+|++|++++.+......+. .+++.||||.+|+
T Consensus       184 ~~~~g~v~~~~~--~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~-~l~~~pDNi~~d~  260 (340)
T d1v04a_         184 GLAWSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDP  260 (340)
T ss_dssp             TCCCEEEEEECS--SCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECT
T ss_pred             cCCceeEEEEcC--CceEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEe-cCCCCCCccEEec
Confidence            567888999987  5677888999999999999999999999999999999999876444443443 4788999999995


Q ss_pred             -CCCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEE----CCCCcEEEEEECCCCCeeccceee
Q 017371          275 -DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHV----AEDGTIIRNLVDPTGQLMSFVTSG  349 (372)
Q Consensus       275 -~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~----~~~g~~~~~~~~~~g~~~~~~t~~  349 (372)
                       +|++|++......             ++....+....       ...++++    ..++++.+.|.++ |..+..+|.+
T Consensus       261 ~~g~lwva~~p~~~-------------~~~~~~~~~~~-------~s~v~ri~~~~~~~~~v~~~~~~~-G~~~~~~T~a  319 (340)
T d1v04a_         261 VTGDLWVGCHPNGM-------------RIFFYDAENPP-------GSEVLRIQDILSEEPKVTVVYAEN-GTVLQGSTVA  319 (340)
T ss_dssp             TTCCEEEEEESCHH-------------HHHSCCTTSCC-------CEEEEEEECTTSSSCEEEEEEEEC-SSSSCSEEEE
T ss_pred             CCCEEEEEECCccc-------------chhhhcccCCC-------CceeEEEEeccCCCCeEEEEEeCC-CcEeeceEEE
Confidence             7899999876321             11111111111       1234444    2457888888774 6668889999


Q ss_pred             EEECCEEEEEeCCCCeEEEEeC
Q 017371          350 LQVDNHLYVISLTSNFIGKVQL  371 (372)
Q Consensus       350 ~~~~g~L~igs~~~~~i~~~~~  371 (372)
                      .+.+|+|||||...++| .|+|
T Consensus       320 ~~~~g~L~iGs~~~~~l-~C~~  340 (340)
T d1v04a_         320 AVYKGKLLIGTVFHKAL-YCDL  340 (340)
T ss_dssp             EEETTEEEEEESSSCEE-EEEC
T ss_pred             EEECCEEEEEeeeCCce-EecC
Confidence            99999999999999988 6876

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.92  E-value=1.6e-23  Score=185.75  Aligned_cols=230  Identities=17%  Similarity=0.207  Sum_probs=173.8

Q ss_pred             CCCccEEEcCCCcEEEEe--cCCeEEEEe-CCceEEEEe--cCCCcccCeEEcCCCCEEEEeCCCcEEEEcCCC-cEEEe
Q 017371           79 NHPEDASMDKNGVIYTAT--RDGWIKRLQ-DGTWVNWKF--IDSQTLVGLTSTKEGHLIICDNANGLHKVSEDG-VENFL  152 (372)
Q Consensus        79 ~~p~~i~~d~~G~l~v~~--~~g~i~~~~-~g~~~~~~~--~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~~~g-~~~l~  152 (372)
                      .+|++|++|++|++|+++  .+++|.+++ ++.......  ....|. |++++++|+|||++...+++++..++ ...+.
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~-gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~   92 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQ-GLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVL   92 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCC-CEEECTTCCEEEEETTTEEEEECTTCSCCEEC
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCce-EEEEcCCCCEEEeeeeeceeeeeeeccceeee
Confidence            479999999999999987  467889988 444333322  235789 99999999999999888787777444 32221


Q ss_pred             eecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEE-eCCccCcceEEEecCCC
Q 017371          153 SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-ADGFYFANGVALSRDED  231 (372)
Q Consensus       153 ~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~-~~~~~~~~gi~~~~dg~  231 (372)
                         ....+..|++|++|++|+||++|.                 ...++++++..+...... ..++..|++++++++++
T Consensus        93 ---~~~~~~~p~~iavd~~g~i~v~d~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~  152 (260)
T d1rwia_          93 ---PFDGLNYPEGLAVDTQGAVYVADR-----------------GNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN  152 (260)
T ss_dssp             ---CCCSCCSEEEEEECTTCCEEEEEG-----------------GGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCC
T ss_pred             ---eeeeeeecccccccccceeEeecc-----------------ccccccccccccceeeeeeecccCCcceeeecCCCC
Confidence               122245789999999999999875                 356789998875544332 35678899999999987


Q ss_pred             EEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCcccc
Q 017371          232 YVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFS  311 (372)
Q Consensus       232 ~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~  311 (372)
                       +|+++..+.+|.+++.++..   ...+.....+.|.++++|++|+|||++..                           
T Consensus       153 -~~v~~~~~~~i~~~d~~~~~---~~~~~~~~~~~p~gi~~d~~g~l~vsd~~---------------------------  201 (260)
T d1rwia_         153 -VYVTDTDNNRVVKLEAESNN---QVVLPFTDITAPWGIAVDEAGTVYVTEHN---------------------------  201 (260)
T ss_dssp             -EEEEEGGGTEEEEECTTTCC---EEECCCSSCCSEEEEEECTTCCEEEEETT---------------------------
T ss_pred             -Eeeeccccccccccccccce---eeeeeccccCCCccceeeeeeeeeeeecC---------------------------
Confidence             99999999999999987642   22222223356999999999999999987                           


Q ss_pred             ccccCCCceEEEEECCCCcEEEEEECCCCCeeccceeeEEE-CCEEEEEeCCCCeEEEEe
Q 017371          312 QFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQ  370 (372)
Q Consensus       312 ~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~L~igs~~~~~i~~~~  370 (372)
                             .+.|+++++++.....+... +  +..+++++.+ +|+||+++..+++|.++.
T Consensus       202 -------~~~i~~~~~~~~~~~~~~~~-~--~~~P~~i~~d~~g~l~vad~~~~rI~~i~  251 (260)
T d1rwia_         202 -------TNQVVKLLAGSTTSTVLPFT-G--LNTPLAVAVDSDRTVYVADRGNDRVVKLT  251 (260)
T ss_dssp             -------TTEEEEECTTCSCCEECCCC-S--CCCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred             -------CCEEEEEeCCCCeEEEEccC-C--CCCeEEEEEeCCCCEEEEECCCCEEEEEe
Confidence                   56899999988765544321 2  5567888887 589999999999999986

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.92  E-value=7.5e-23  Score=185.37  Aligned_cols=232  Identities=19%  Similarity=0.211  Sum_probs=175.8

Q ss_pred             ceEecCCCCCCCccEEEcCCCcEEEEe-cCCeEEEEe-CCceEEEEecCCCcccCeEEcCCCCEEEEeCC-CcEEEEc--
Q 017371           70 FIKVGEGSVNHPEDASMDKNGVIYTAT-RDGWIKRLQ-DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS--  144 (372)
Q Consensus        70 ~~~~~~g~~~~p~~i~~d~~G~l~v~~-~~g~i~~~~-~g~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~-~gv~~~~--  144 (372)
                      +..++.+.  .||++++++||+||+++ .+++|++++ +|+.+.+....+.|. ++++++||+|||++.. ..+.+++  
T Consensus        21 ~~~~p~~~--~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~~~~~~~~~~~-gla~~~dG~l~v~~~~~~~~~~~~~~   97 (302)
T d2p4oa1          21 ITSFPVNT--FLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVS-GLAFTSNGDLVATGWNADSIPVVSLV   97 (302)
T ss_dssp             EEEECTTC--CEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEE-EEEECTTSCEEEEEECTTSCEEEEEE
T ss_pred             EEECCCCC--CcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEEEEEcCCCCcc-eEEEcCCCCeEEEecCCceEEEEEec
Confidence            34455553  59999999999999999 689999999 888888888888999 9999999999999755 3455555  


Q ss_pred             -CCC-cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeC------
Q 017371          145 -EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD------  216 (372)
Q Consensus       145 -~~g-~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~------  216 (372)
                       .++ .+.+.....   ...+++++++++|++|++++                 ..+.++++|+.++.......      
T Consensus        98 ~~~~~~~~~~~~~~---~~~~n~i~~~~~g~~~v~~~-----------------~~~~i~~~~~~~~~~~~~~~~~~~~~  157 (302)
T d2p4oa1          98 KSDGTVETLLTLPD---AIFLNGITPLSDTQYLTADS-----------------YRGAIWLIDVVQPSGSIWLEHPMLAR  157 (302)
T ss_dssp             CTTSCEEEEEECTT---CSCEEEEEESSSSEEEEEET-----------------TTTEEEEEETTTTEEEEEEECGGGSC
T ss_pred             ccccceeeccccCC---ccccceeEEccCCCEEeecc-----------------ccccceeeeccCCcceeEecCCccce
Confidence             344 555544322   34689999999999999976                 56789999998777665432      


Q ss_pred             -----CccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCC-CcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHH
Q 017371          217 -----GFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGER-KGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRM  290 (372)
Q Consensus       217 -----~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~-~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~  290 (372)
                           ....+||+.++  ++++|++++..++|++++.++.. ......+.  ..+.|+++++|++|+||++...      
T Consensus       158 ~~~~~~~~~~ngi~~~--~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~pdgia~d~dG~l~va~~~------  227 (302)
T d2p4oa1         158 SNSESVFPAANGLKRF--GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV--EQTNIDDFAFDVEGNLYGATHI------  227 (302)
T ss_dssp             SSTTCCSCSEEEEEEE--TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE--ESCCCSSEEEBTTCCEEEECBT------
T ss_pred             eeccCccccccccccc--CCceeeecCCCCeEEecccccccccccccccc--CCCCCcceEECCCCCEEEEEcC------
Confidence                 23445677654  66899999999999999987642 22223332  2346999999999999999987      


Q ss_pred             HHhhcchhHHHHHHhcCccccccccCCCceEEEEECCCCcEEEEEECCCCCeeccceeeEEE-----CCEEEEEeCCCC
Q 017371          291 KILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV-----DNHLYVISLTSN  364 (372)
Q Consensus       291 ~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~-----~g~L~igs~~~~  364 (372)
                                                  .+.|.+++++|+.........+  ...++++.+.     .+.||+++..+.
T Consensus       228 ----------------------------~~~V~~i~p~G~~~~~~~~~~~--~~~pt~vafg~~~~D~~~Lyvtt~~g~  276 (302)
T d2p4oa1         228 ----------------------------YNSVVRIAPDRSTTIIAQAEQG--VIGSTAVAFGQTEGDCTAIYVVTNGGM  276 (302)
T ss_dssp             ----------------------------TCCEEEECTTCCEEEEECGGGT--CTTEEEEEECCSTTTTTEEEEEECTTS
T ss_pred             ----------------------------CCcEEEECCCCCEEEEEecCCC--CCCceEEEEcCCCCCCCEEEEECCCCc
Confidence                                        5789999999998776655443  3467888883     267999987653

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.86  E-value=1.9e-19  Score=160.79  Aligned_cols=235  Identities=14%  Similarity=0.247  Sum_probs=170.7

Q ss_pred             CCCCCCCccEEEcCCCcEEEEe-cCCeEEEEe-CCceEE-EEec------CCCcccCeEEcCC-CCEEEEeC-C-CcEEE
Q 017371           75 EGSVNHPEDASMDKNGVIYTAT-RDGWIKRLQ-DGTWVN-WKFI------DSQTLVGLTSTKE-GHLIICDN-A-NGLHK  142 (372)
Q Consensus        75 ~g~~~~p~~i~~d~~G~l~v~~-~~g~i~~~~-~g~~~~-~~~~------~~~p~~gl~~d~d-G~l~v~~~-~-~gv~~  142 (372)
                      .|.|..|++|++|++|+||+++ .+++|.+|+ +|++.. +...      ...|. +++++.+ +..+++.. . ..+..
T Consensus        19 ~g~f~~P~gvavd~dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~i~~   97 (279)
T d1q7fa_          19 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPN-RVAVVRNSGDIIVTERSPTHQIQI   97 (279)
T ss_dssp             TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEE-EEEEETTTTEEEEEECGGGCEEEE
T ss_pred             CCeECCccEEEEcCCCCEEEEECCCCEEEEEeCCCCEEEEecccCCCcccccccc-cccccccccccceeccCCcccccc
Confidence            3568899999999999999999 788999999 887543 3221      12456 7776644 45555433 2 34666


Q ss_pred             EcCCC--cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEE--eCCc
Q 017371          143 VSEDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV--ADGF  218 (372)
Q Consensus       143 ~~~~g--~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~--~~~~  218 (372)
                      ++.+|  ...+    ....+..|.+++++++|++|+++.                 ..+++++++++...+..+  ...+
T Consensus        98 ~~~~g~~~~~~----~~~~~~~p~~~avd~~G~i~v~~~-----------------~~~~~~~~~~~g~~~~~~g~~~~~  156 (279)
T d1q7fa_          98 YNQYGQFVRKF----GATILQHPRGVTVDNKGRIIVVEC-----------------KVMRVIIFDQNGNVLHKFGCSKHL  156 (279)
T ss_dssp             ECTTSCEEEEE----CTTTCSCEEEEEECTTSCEEEEET-----------------TTTEEEEECTTSCEEEEEECTTTC
T ss_pred             ccccccceeec----CCCcccccceeccccCCcEEEEee-----------------ccceeeEeccCCceeecccccccc
Confidence            66767  3322    223356788999999999999876                 356889999874444443  2346


Q ss_pred             cCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeecc-CCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcch
Q 017371          219 YFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAE-NLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSK  297 (372)
Q Consensus       219 ~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~-~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~  297 (372)
                      ..|.+++++++++ +|+++...++|++|+.+|....   .+.. .....|.+|++|++|+|||++...            
T Consensus       157 ~~~~~i~~d~~g~-i~v~d~~~~~V~~~d~~G~~~~---~~g~~g~~~~P~giavD~~G~i~Vad~~~------------  220 (279)
T d1q7fa_         157 EFPNGVVVNDKQE-IFISDNRAHCVKVFNYEGQYLR---QIGGEGITNYPIGVGINSNGEILIADNHN------------  220 (279)
T ss_dssp             SSEEEEEECSSSE-EEEEEGGGTEEEEEETTCCEEE---EESCTTTSCSEEEEEECTTCCEEEEECSS------------
T ss_pred             cccceeeecccee-EEeeeccccceeeeecCCceee---eecccccccCCcccccccCCeEEEEECCC------------
Confidence            7788999999885 9999999999999998875322   2221 123469999999999999998641            


Q ss_pred             hHHHHHHhcCccccccccCCCceEEEEECCCCcEEEEEECCCCCeeccceeeEEE-CCEEEEEeCCCCeEEEEeC
Q 017371          298 LIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL  371 (372)
Q Consensus       298 ~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~L~igs~~~~~i~~~~~  371 (372)
                                           +..|..++++|+.+.++..+..  ...++.++.+ +|+||+++ .+++|.+++.
T Consensus       221 ---------------------~~~v~~f~~~G~~~~~~~~~~~--~~~p~~vav~~dG~l~V~~-~n~~v~~fr~  271 (279)
T d1q7fa_         221 ---------------------NFNLTIFTQDGQLISALESKVK--HAQCFDVALMDDGSVVLAS-KDYRLYIYRY  271 (279)
T ss_dssp             ---------------------SCEEEEECTTSCEEEEEEESSC--CSCEEEEEEETTTEEEEEE-TTTEEEEEEC
T ss_pred             ---------------------CcEEEEECCCCCEEEEEeCCCC--CCCEeEEEEeCCCcEEEEe-CCCeEEEEEe
Confidence                                 3478999999999888865432  3357788776 68999998 5799999875

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.84  E-value=1.6e-19  Score=159.55  Aligned_cols=184  Identities=16%  Similarity=0.197  Sum_probs=137.5

Q ss_pred             CCCCCCccEEEcCCCcEEEEecCCeEEEEe-CCceEEEE--ecCCCcccCeEEcCCCCEEEEeCC-CcEEEEcCCC-cEE
Q 017371           76 GSVNHPEDASMDKNGVIYTATRDGWIKRLQ-DGTWVNWK--FIDSQTLVGLTSTKEGHLIICDNA-NGLHKVSEDG-VEN  150 (372)
Q Consensus        76 g~~~~p~~i~~d~~G~l~v~~~~g~i~~~~-~g~~~~~~--~~~~~p~~gl~~d~dG~l~v~~~~-~gv~~~~~~g-~~~  150 (372)
                      +.+..|++|+++++|+||+++..+.+.++. ++......  .....|. +++++++|+||+++.. ..+.+++.++ ...
T Consensus        54 ~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~~~~p~-~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~  132 (260)
T d1rwia_          54 NGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPE-GLAVDTQGAVYVADRGNNRVVKLAAGSKTQT  132 (260)
T ss_dssp             CSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCSCCSEE-EEEECTTCCEEEEEGGGTEEEEECTTCSSCE
T ss_pred             CCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeeeeeeecc-cccccccceeEeeccccccccccccccceee
Confidence            446789999999999999999777777666 44333322  2346789 9999999999999865 4577777555 322


Q ss_pred             EeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEE-eCCccCcceEEEecC
Q 017371          151 FLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-ADGFYFANGVALSRD  229 (372)
Q Consensus       151 l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~-~~~~~~~~gi~~~~d  229 (372)
                      ..   ....+..|.+|+++++|++|+++.                 ..++|+++|+++.....+ ...+..|+|++++++
T Consensus       133 ~~---~~~~~~~p~~i~~~~~g~~~v~~~-----------------~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~  192 (260)
T d1rwia_         133 VL---PFTGLNDPDGVAVDNSGNVYVTDT-----------------DNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEA  192 (260)
T ss_dssp             EC---CCCSCCSCCEEEECTTCCEEEEEG-----------------GGTEEEEECTTTCCEEECCCSSCCSEEEEEECTT
T ss_pred             ee---eecccCCcceeeecCCCCEeeecc-----------------ccccccccccccceeeeeeccccCCCccceeeee
Confidence            21   112246788999999999999876                 457899999885554443 356888999999999


Q ss_pred             CCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 017371          230 EDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       230 g~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~  284 (372)
                      |+ |||++..+++|++|+.++..   ...+.......|.+|++|++|+|||++..
T Consensus       193 g~-l~vsd~~~~~i~~~~~~~~~---~~~~~~~~~~~P~~i~~d~~g~l~vad~~  243 (260)
T d1rwia_         193 GT-VYVTEHNTNQVVKLLAGSTT---STVLPFTGLNTPLAVAVDSDRTVYVADRG  243 (260)
T ss_dssp             CC-EEEEETTTTEEEEECTTCSC---CEECCCCSCCCEEEEEECTTCCEEEEEGG
T ss_pred             ee-eeeeecCCCEEEEEeCCCCe---EEEEccCCCCCeEEEEEeCCCCEEEEECC
Confidence            87 99999999999999876542   12222222246999999999999999987

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.68  E-value=7.7e-16  Score=139.42  Aligned_cols=155  Identities=14%  Similarity=0.174  Sum_probs=121.6

Q ss_pred             CCCCccEEEcCCCcEEEEec----------------CCeEEEEe-CCceEEEEecCCCcccCeEEcCCCC-----EEEEe
Q 017371           78 VNHPEDASMDKNGVIYTATR----------------DGWIKRLQ-DGTWVNWKFIDSQTLVGLTSTKEGH-----LIICD  135 (372)
Q Consensus        78 ~~~p~~i~~d~~G~l~v~~~----------------~g~i~~~~-~g~~~~~~~~~~~p~~gl~~d~dG~-----l~v~~  135 (372)
                      +..|..+++|++|+||+++.                .|+|++++ +|+...+......|+ ||+++++++     |||++
T Consensus       116 ~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~~~~~~~~~pN-Gi~~~~d~d~~~~~lyv~d  194 (314)
T d1pjxa_         116 MQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQFPN-GIAVRHMNDGRPYQLIVAE  194 (314)
T ss_dssp             CBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEEESSEE-EEEEEECTTSCEEEEEEEE
T ss_pred             cCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecCceeEeeCCcceee-eeEECCCCCcceeEEEEEe
Confidence            55799999999999999973                36799999 888877777777899 999987764     99998


Q ss_pred             CC-CcEEEEc--CCC-cEE--EeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCC
Q 017371          136 NA-NGLHKVS--EDG-VEN--FLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN  209 (372)
Q Consensus       136 ~~-~gv~~~~--~~g-~~~--l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~  209 (372)
                      .. ..|++++  .+| +..  +....++.....|.+|++|++|+||+++.                 ..++|++|||+++
T Consensus       195 ~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~-----------------~~g~I~~~dp~~g  257 (314)
T d1pjxa_         195 TPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANW-----------------GSSHIEVFGPDGG  257 (314)
T ss_dssp             TTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEE-----------------TTTEEEEECTTCB
T ss_pred             ecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEc-----------------CCCEEEEEeCCCC
Confidence            76 4588877  455 321  22233333345688999999999999865                 4689999999977


Q ss_pred             eEEE-EeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccC
Q 017371          210 ITTL-VADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKG  250 (372)
Q Consensus       210 ~~~~-~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g  250 (372)
                      +... +......|.+++|.+|++.|||++..+++|+++++..
T Consensus       258 ~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         258 QPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             SCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             EEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence            6543 4445577889999999999999999999999999753

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=9.2e-14  Score=122.42  Aligned_cols=219  Identities=10%  Similarity=0.106  Sum_probs=156.4

Q ss_pred             cEEEEecCCeEEEEe-C-CceEEEEecCCCcccCeEEcC-CCCEEEEeCCC-cEEEEcCCC------cEEEeeecCCccc
Q 017371           91 VIYTATRDGWIKRLQ-D-GTWVNWKFIDSQTLVGLTSTK-EGHLIICDNAN-GLHKVSEDG------VENFLSYVNGSKL  160 (372)
Q Consensus        91 ~l~v~~~~g~i~~~~-~-g~~~~~~~~~~~p~~gl~~d~-dG~l~v~~~~~-gv~~~~~~g------~~~l~~~~~~~~~  160 (372)
                      .|++++.+ .|.+++ + .....+......+. +|.+|. .+.||++|... .+.+.+-+|      .+.+..    ...
T Consensus         3 fLl~s~~~-~I~~~~l~~~~~~~~~~~~~~~~-~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~----~~~   76 (266)
T d1ijqa1           3 YLFFTNRH-EVRKMTLDRSEYTSLIPNLRNVV-ALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS----RDI   76 (266)
T ss_dssp             EEEEECBS-SEEEEETTSCCCEEEECSCSSEE-EEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC----SSC
T ss_pred             EEEEECCC-eEEEEECCCCcceeeeCCCCceE-EEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEe----CCC
Confidence            46666643 488998 4 45566666667788 999985 56799998764 477766332      222211    123


Q ss_pred             ccccceEEcc-CCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEE-EeCCccCcceEEEecCCCEEEEEeC
Q 017371          161 RFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VADGFYFANGVALSRDEDYVVVCES  238 (372)
Q Consensus       161 ~~~~~l~~d~-dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~-~~~~~~~~~gi~~~~dg~~l~v~~~  238 (372)
                      ..|.+|++|. .++||++|.                 ..++|.++++++..... +...+..|.+++++|..+++||++.
T Consensus        77 ~~p~glAvD~~~~~lY~~d~-----------------~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~  139 (266)
T d1ijqa1          77 QAPDGLAVDWIHSNIYWTDS-----------------VLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDW  139 (266)
T ss_dssp             SCCCEEEEETTTTEEEEEET-----------------TTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEEC
T ss_pred             CCcceEEEeeccceEEEEec-----------------CCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEecc
Confidence            4678999996 678999986                 45689999987555444 4566788999999998889999997


Q ss_pred             CC-CeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCC-CEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccC
Q 017371          239 WK-FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDG-TFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITL  316 (372)
Q Consensus       239 ~~-~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G-~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~  316 (372)
                      +. .+|++.+++|..   .+.+....-..|.+|++|..+ +||+++..                                
T Consensus       140 ~~~~~I~r~~~dGs~---~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~--------------------------------  184 (266)
T d1ijqa1         140 GTPAKIKKGGLNGVD---IYSLVTENIQWPNGITLDLLSGRLYWVDSK--------------------------------  184 (266)
T ss_dssp             SSSCEEEEEETTSCC---EEEEECSSCSCEEEEEEETTTTEEEEEETT--------------------------------
T ss_pred             CCCcceeEeccCCCc---eecccccccceeeEEEeeccccEEEEecCC--------------------------------
Confidence            65 589999998852   233333333569999999765 69998876                                


Q ss_pred             CCceEEEEECCCCcEEEEE-ECCCCCeeccceeeEEECCEEEEEeCCCCeEEEEeC
Q 017371          317 GGGAHLIHVAEDGTIIRNL-VDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL  371 (372)
Q Consensus       317 ~~~~~v~~~~~~g~~~~~~-~~~~g~~~~~~t~~~~~~g~L~igs~~~~~i~~~~~  371 (372)
                        .+.|.+++.+|.-...+ ....+  ...+.++..++++||..+...+.|.+++.
T Consensus       185 --~~~I~~~~~dG~~~~~~~~~~~~--~~~p~~lav~~~~ly~td~~~~~I~~~~~  236 (266)
T d1ijqa1         185 --LHSISSIDVNGGNRKTILEDEKR--LAHPFSLAVFEDKVFWTDIINEAIFSANR  236 (266)
T ss_dssp             --TTEEEEEETTSCSCEEEEECTTT--TSSEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred             --cCEEEEEECCCCCEEEEEeCCCc--ccccEEEEEECCEEEEEECCCCeEEEEEC
Confidence              46899999888643333 33222  44577888889999999999999999874

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.64  E-value=3.5e-14  Score=128.60  Aligned_cols=192  Identities=15%  Similarity=0.196  Sum_probs=134.6

Q ss_pred             CeEEcCCCCEEEEeCC-CcEEEEcCCC--cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCC
Q 017371          122 GLTSTKEGHLIICDNA-NGLHKVSEDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPH  198 (372)
Q Consensus       122 gl~~d~dG~l~v~~~~-~gv~~~~~~g--~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~  198 (372)
                      |+++|++|+||++|.. ..|+++++++  .........    ..|++|++++||++|+++...             ....
T Consensus        44 G~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~----~~p~gla~~~dG~l~va~~~~-------------~~~~  106 (319)
T d2dg1a1          44 GLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHK----ANPAAIKIHKDGRLFVCYLGD-------------FKST  106 (319)
T ss_dssp             EEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSS----SSEEEEEECTTSCEEEEECTT-------------SSSC
T ss_pred             eCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCC----CCeeEEEECCCCCEEEEecCC-------------Cccc
Confidence            9999999999999866 4599999655  333222212    257899999999999986531             1245


Q ss_pred             CeEEEEeCCCCeEEEEeCC---ccCcceEEEecCCCEEEEEeCCC------CeEEEEEccCCCCcceeeeccCCCCCCce
Q 017371          199 GQLLKYDPSSNITTLVADG---FYFANGVALSRDEDYVVVCESWK------FRCRKYWLKGERKGKLETFAENLPGAPDN  269 (372)
Q Consensus       199 g~v~~~d~~t~~~~~~~~~---~~~~~gi~~~~dg~~l~v~~~~~------~~i~~~~~~g~~~~~~~~~~~~~~g~p~~  269 (372)
                      ++++.++..+++.......   ...||.++++++|+ +|+++...      ..+++++.++..   .+...... ..|+|
T Consensus       107 ~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~dg~~---~~~~~~~~-~~pnG  181 (319)
T d2dg1a1         107 GGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRT---VTPIIQNI-SVANG  181 (319)
T ss_dssp             CEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCC---EEEEEEEE-SSEEE
T ss_pred             eeEEEEcCCCceeeeeccCCCcccCCcceeEEeccc-eeecccccccccCcceeEEEecccce---eEEEeecc-ceeee
Confidence            7899999987777665533   45688999999997 99998653      348888876642   22222222 35899


Q ss_pred             eEEcCCCC-EEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEEC--CCCcEEEEE-----ECCCCC
Q 017371          270 INLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVA--EDGTIIRNL-----VDPTGQ  341 (372)
Q Consensus       270 i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~--~~g~~~~~~-----~~~~g~  341 (372)
                      |++++||+ ||+++..                                  .+.|.+|+  .+|......     ....+ 
T Consensus       182 ia~s~dg~~lyvad~~----------------------------------~~~I~~~d~~~~g~~~~~~~~~~~~~~~~-  226 (319)
T d2dg1a1         182 IALSTDEKVLWVTETT----------------------------------ANRLHRIALEDDGVTIQPFGATIPYYFTG-  226 (319)
T ss_dssp             EEECTTSSEEEEEEGG----------------------------------GTEEEEEEECTTSSSEEEEEEEEEEECCS-
T ss_pred             eeeccccceEEEeccc----------------------------------CCceEEEEEcCCCceeccccceeeeccCC-
Confidence            99999996 9999976                                  45677774  455433221     11111 


Q ss_pred             eeccceeeEEE-CCEEEEEeCCCCeEEEEeC
Q 017371          342 LMSFVTSGLQV-DNHLYVISLTSNFIGKVQL  371 (372)
Q Consensus       342 ~~~~~t~~~~~-~g~L~igs~~~~~i~~~~~  371 (372)
                       ...+..++.+ +|+||++...++.|.+++-
T Consensus       227 -~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p  256 (319)
T d2dg1a1         227 -HEGPDSCCIDSDDNLYVAMYGQGRVLVFNK  256 (319)
T ss_dssp             -SSEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred             -ccceeeeeEcCCCCEEEEEcCCCEEEEECC
Confidence             1235677777 6999999999999999873

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=7.5e-14  Score=122.75  Aligned_cols=199  Identities=13%  Similarity=0.111  Sum_probs=147.5

Q ss_pred             CCccEEEc-CCCcEEEEe-cCCeEEEEe-CC-ceEEEEe-cCCCcccCeEEcC-CCCEEEEeCC-CcEEEEcCCC--cEE
Q 017371           80 HPEDASMD-KNGVIYTAT-RDGWIKRLQ-DG-TWVNWKF-IDSQTLVGLTSTK-EGHLIICDNA-NGLHKVSEDG--VEN  150 (372)
Q Consensus        80 ~p~~i~~d-~~G~l~v~~-~~g~i~~~~-~g-~~~~~~~-~~~~p~~gl~~d~-dG~l~v~~~~-~gv~~~~~~g--~~~  150 (372)
                      .+.+|++| .++.||+++ .++.|++.+ +| ..+.+.. ..+.|. +|++|. .++||+++.. ..+.+++.+|  .+.
T Consensus        37 ~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~-~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~  115 (263)
T d1npea_          37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPE-GIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV  115 (263)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEE-EEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             cEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEecccccc-EEEEeccCCeEEEeccCCCEEEEEecCCceEEE
Confidence            35568888 467899998 678899998 54 3444443 346889 999994 6789999876 4577777666  444


Q ss_pred             EeeecCCcccccccceEEcc-CCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEE-EeCCccCcceEEEec
Q 017371          151 FLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VADGFYFANGVALSR  228 (372)
Q Consensus       151 l~~~~~~~~~~~~~~l~~d~-dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~-~~~~~~~~~gi~~~~  228 (372)
                      +...    .+..|.+|++|+ .|.+|+++..               ...++|++.+.++...+. +..++..|+|+++++
T Consensus       116 l~~~----~l~~p~~l~vdp~~g~ly~t~~~---------------~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~  176 (263)
T d1npea_         116 LFDT----GLVNPRGIVTDPVRGNLYWTDWN---------------RDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDA  176 (263)
T ss_dssp             EECS----SCSSEEEEEEETTTTEEEEEECC---------------SSSCEEEEEETTSCCCEEEECTTCSCEEEEEEET
T ss_pred             Eecc----cccCCcEEEEecccCcEEEeecC---------------CCCcEEEEecCCCCCceeeeeecccccceEEEee
Confidence            4332    134688999997 5789998753               235679999987554444 446788999999999


Q ss_pred             CCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCc
Q 017371          229 DEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPK  308 (372)
Q Consensus       229 dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~  308 (372)
                      .++.|||++...+.|.+++++|..   .+.....+ ..|.+|+++ +++||++++.                        
T Consensus       177 ~~~~lYw~d~~~~~I~~~~~~g~~---~~~v~~~~-~~P~~lav~-~~~lYwtd~~------------------------  227 (263)
T d1npea_         177 FSSQLCWVDAGTHRAECLNPAQPG---RRKVLEGL-QYPFAVTSY-GKNLYYTDWK------------------------  227 (263)
T ss_dssp             TTTEEEEEETTTTEEEEEETTEEE---EEEEEECC-CSEEEEEEE-TTEEEEEETT------------------------
T ss_pred             cCcEEEEEeCCCCEEEEEECCCCC---eEEEECCC-CCcEEEEEE-CCEEEEEECC------------------------
Confidence            999999999999999999998742   23333333 358899998 5789999987                        


Q ss_pred             cccccccCCCceEEEEECCC-CcEEEEEEC
Q 017371          309 LFSQFITLGGGAHLIHVAED-GTIIRNLVD  337 (372)
Q Consensus       309 ~~~~~~~~~~~~~v~~~~~~-g~~~~~~~~  337 (372)
                                .+.|.+++.. |+.+..+..
T Consensus       228 ----------~~~I~~~~~~~g~~~~~~~~  247 (263)
T d1npea_         228 ----------TNSVIAMDLAISKEMDTFHP  247 (263)
T ss_dssp             ----------TTEEEEEETTTTEEEEEECC
T ss_pred             ----------CCEEEEEECCCCccceEECC
Confidence                      5689999975 777776654

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.62  E-value=3.4e-14  Score=126.16  Aligned_cols=198  Identities=14%  Similarity=0.220  Sum_probs=142.3

Q ss_pred             CCcccCeEEcCCCCEEEEeCC-CcEEEEcCCC--cEEEeeec-CCcccccccceEEccC-CcEEEEeCCCCCCCcccccc
Q 017371          117 SQTLVGLTSTKEGHLIICDNA-NGLHKVSEDG--VENFLSYV-NGSKLRFANDVVEASD-GSLYFTVSSSKYLPHEYCLD  191 (372)
Q Consensus       117 ~~p~~gl~~d~dG~l~v~~~~-~gv~~~~~~g--~~~l~~~~-~~~~~~~~~~l~~d~d-G~i~vtd~~~~~~~~~~~~~  191 (372)
                      ..|. |++++++|+|||+|.. +.|.+++.+|  ...+.... .......|.+++++.+ +..++...+           
T Consensus        23 ~~P~-gvavd~dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-----------   90 (279)
T d1q7fa_          23 TEPS-GVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS-----------   90 (279)
T ss_dssp             SCEE-EEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECG-----------
T ss_pred             CCcc-EEEEcCCCCEEEEECCCCEEEEEeCCCCEEEEecccCCCcccccccccccccccccccceeccC-----------
Confidence            3688 9999999999999866 5688999878  44443321 1122346778887654 555554332           


Q ss_pred             cccccCCCeEEEEeCCCCeEEEEe-CCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeec-cCCCCCCce
Q 017371          192 ILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFA-ENLPGAPDN  269 (372)
Q Consensus       192 ~~~~~~~g~v~~~d~~t~~~~~~~-~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~-~~~~g~p~~  269 (372)
                           .+++|.+++........+. ..+..|.+++++++|+ +|+++....++.+++.++....   .+. ......|.+
T Consensus        91 -----~~~~i~~~~~~g~~~~~~~~~~~~~p~~~avd~~G~-i~v~~~~~~~~~~~~~~g~~~~---~~g~~~~~~~~~~  161 (279)
T d1q7fa_          91 -----PTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQNGNVLH---KFGCSKHLEFPNG  161 (279)
T ss_dssp             -----GGCEEEEECTTSCEEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTTSCEEE---EEECTTTCSSEEE
T ss_pred             -----CccccccccccccceeecCCCcccccceeccccCCc-EEEEeeccceeeEeccCCceee---cccccccccccce
Confidence                 4568888988644333332 3467789999999997 9999998999999988764222   221 122346889


Q ss_pred             eEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEECCCCcEEEEEECCCCCeeccceee
Q 017371          270 INLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSG  349 (372)
Q Consensus       270 i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~  349 (372)
                      +++|++|++|+++..                                  .+.|..|+++|+.+..+..+ |. +..+.++
T Consensus       162 i~~d~~g~i~v~d~~----------------------------------~~~V~~~d~~G~~~~~~g~~-g~-~~~P~gi  205 (279)
T d1q7fa_         162 VVVNDKQEIFISDNR----------------------------------AHCVKVFNYEGQYLRQIGGE-GI-TNYPIGV  205 (279)
T ss_dssp             EEECSSSEEEEEEGG----------------------------------GTEEEEEETTCCEEEEESCT-TT-SCSEEEE
T ss_pred             eeeccceeEEeeecc----------------------------------ccceeeeecCCceeeeeccc-cc-ccCCccc
Confidence            999999999999987                                  56899999999999888543 33 5678888


Q ss_pred             EEE-CCEEEEEeCCCC-eEEEEeC
Q 017371          350 LQV-DNHLYVISLTSN-FIGKVQL  371 (372)
Q Consensus       350 ~~~-~g~L~igs~~~~-~i~~~~~  371 (372)
                      +.+ +|+||+++..++ .|.+++-
T Consensus       206 avD~~G~i~Vad~~~~~~v~~f~~  229 (279)
T d1q7fa_         206 GINSNGEILIADNHNNFNLTIFTQ  229 (279)
T ss_dssp             EECTTCCEEEEECSSSCEEEEECT
T ss_pred             ccccCCeEEEEECCCCcEEEEECC
Confidence            887 689999986554 5777653

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=2.4e-13  Score=119.66  Aligned_cols=182  Identities=13%  Similarity=0.097  Sum_probs=132.9

Q ss_pred             CCCCccEEEcC-CCcEEEEe-cCCeEEEEe-CC-----ceEEE-EecCCCcccCeEEcC-CCCEEEEeCCC-cEEEEcCC
Q 017371           78 VNHPEDASMDK-NGVIYTAT-RDGWIKRLQ-DG-----TWVNW-KFIDSQTLVGLTSTK-EGHLIICDNAN-GLHKVSED  146 (372)
Q Consensus        78 ~~~p~~i~~d~-~G~l~v~~-~~g~i~~~~-~g-----~~~~~-~~~~~~p~~gl~~d~-dG~l~v~~~~~-gv~~~~~~  146 (372)
                      +..|.+|.+|. ++.||+++ ..+.|++.+ ++     ..+.. ......|. ||++|. .++||+++... .+.+.+.+
T Consensus        29 ~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~-glAvD~~~~~lY~~d~~~~~I~v~~~~  107 (266)
T d1ijqa1          29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD-GLAVDWIHSNIYWTDSVLGTVSVADTK  107 (266)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC-EEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcc-eEEEeeccceEEEEecCCCEEEeEecC
Confidence            56788899985 66899999 678899887 43     22232 33346788 999995 56899998774 47777766


Q ss_pred             C--cEEEeeecCCcccccccceEEcc-CCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEe-CCccCcc
Q 017371          147 G--VENFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFAN  222 (372)
Q Consensus       147 g--~~~l~~~~~~~~~~~~~~l~~d~-dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~-~~~~~~~  222 (372)
                      |  ...+...    ....|.+|++|+ .|.+|+++.+                ..++|++.+.+....+.+. .++..|+
T Consensus       108 g~~~~~~~~~----~~~~P~~l~vd~~~g~ly~~~~~----------------~~~~I~r~~~dGs~~~~l~~~~~~~p~  167 (266)
T d1ijqa1         108 GVKRKTLFRE----NGSKPRAIVVDPVHGFMYWTDWG----------------TPAKIKKGGLNGVDIYSLVTENIQWPN  167 (266)
T ss_dssp             SSSEEEEEEC----TTCCEEEEEEETTTTEEEEEECS----------------SSCEEEEEETTSCCEEEEECSSCSCEE
T ss_pred             CceEEEEEcC----CCCCcceEEEEcccCeEEEeccC----------------CCcceeEeccCCCceecccccccceee
Confidence            6  3333221    124688999997 6899998754                4568999999866566554 5688999


Q ss_pred             eEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccC--CCCCCceeEEcCCCCEEEEEec
Q 017371          223 GVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAEN--LPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       223 gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~--~~g~p~~i~~d~~G~lwva~~~  284 (372)
                      |+++++.++.|||++...++|.+++++|....   .+...  ....|.+++++ +++||+++..
T Consensus       168 gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~---~~~~~~~~~~~p~~lav~-~~~ly~td~~  227 (266)
T d1ijqa1         168 GITLDLLSGRLYWVDSKLHSISSIDVNGGNRK---TILEDEKRLAHPFSLAVF-EDKVFWTDII  227 (266)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCSCE---EEEECTTTTSSEEEEEEE-TTEEEEEETT
T ss_pred             EEEeeccccEEEEecCCcCEEEEEECCCCCEE---EEEeCCCcccccEEEEEE-CCEEEEEECC
Confidence            99999999999999999999999999885322   22222  22358899999 5789999977

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=3.7e-13  Score=118.23  Aligned_cols=216  Identities=12%  Similarity=0.149  Sum_probs=154.3

Q ss_pred             EEEEecCCeEEEEe-CCce-------EEEEecCCCcccCeEEc-CCCCEEEEeCCC-cEEEEcCCC--cEEEeeecCCcc
Q 017371           92 IYTATRDGWIKRLQ-DGTW-------VNWKFIDSQTLVGLTST-KEGHLIICDNAN-GLHKVSEDG--VENFLSYVNGSK  159 (372)
Q Consensus        92 l~v~~~~g~i~~~~-~g~~-------~~~~~~~~~p~~gl~~d-~dG~l~v~~~~~-gv~~~~~~g--~~~l~~~~~~~~  159 (372)
                      |+++. .+.|.++. ++..       ..+..+...+. +|++| .++.||+++... .+.+++.+|  .+.+...    .
T Consensus         4 Ll~s~-~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~-~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~----~   77 (263)
T d1npea_           4 LLFAQ-TGKIERLPLERNTMKKTEAKAFLHIPAKVII-GLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQ----D   77 (263)
T ss_dssp             EEEEE-EEEEEEEEESSSCBCGGGCEEEEEEEEEEEE-EEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECT----T
T ss_pred             EEEeC-CCeEEEEECCCccccccccccccccCCCcEE-EEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEe----c
Confidence            55554 45788887 4421       12333334566 89999 456899998774 477777444  5544322    1


Q ss_pred             cccccceEEcc-CCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEe-CCccCcceEEEecCCCEEEEEe
Q 017371          160 LRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDEDYVVVCE  237 (372)
Q Consensus       160 ~~~~~~l~~d~-dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~-~~~~~~~gi~~~~dg~~l~v~~  237 (372)
                      ...|.+|++|. .++||+++.                 ..++|.+++++....+.+. .++..|.+++++|..+++||++
T Consensus        78 ~~~p~~iAvD~~~~~lY~~d~-----------------~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~  140 (263)
T d1npea_          78 LGSPEGIALDHLGRTIFWTDS-----------------QLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTD  140 (263)
T ss_dssp             CCCEEEEEEETTTTEEEEEET-----------------TTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEE
T ss_pred             cccccEEEEeccCCeEEEecc-----------------CCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEee
Confidence            24678999995 678999876                 4568999998866555544 5578899999999999999998


Q ss_pred             CCC--CeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCC-CEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccc
Q 017371          238 SWK--FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDG-TFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFI  314 (372)
Q Consensus       238 ~~~--~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G-~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~  314 (372)
                      .+.  .+|++.+++|...   +.+....-..|.+|++|..+ .||+++..                              
T Consensus       141 ~~~~~~~I~r~~~dG~~~---~~i~~~~~~~P~glaiD~~~~~lYw~d~~------------------------------  187 (263)
T d1npea_         141 WNRDNPKIETSHMDGTNR---RILAQDNLGLPNGLTFDAFSSQLCWVDAG------------------------------  187 (263)
T ss_dssp             CCSSSCEEEEEETTSCCC---EEEECTTCSCEEEEEEETTTTEEEEEETT------------------------------
T ss_pred             cCCCCcEEEEecCCCCCc---eeeeeecccccceEEEeecCcEEEEEeCC------------------------------
Confidence            764  3699999987532   22332233469999999665 69898876                              


Q ss_pred             cCCCceEEEEECCCCcEEEEEECCCCCeeccceeeEEECCEEEEEeCCCCeEEEEeC
Q 017371          315 TLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL  371 (372)
Q Consensus       315 ~~~~~~~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~igs~~~~~i~~~~~  371 (372)
                          .+.|.+++.+|.-.+.+-.  +  ...+.++..++++||..+..++.|.++++
T Consensus       188 ----~~~I~~~~~~g~~~~~v~~--~--~~~P~~lav~~~~lYwtd~~~~~I~~~~~  236 (263)
T d1npea_         188 ----THRAECLNPAQPGRRKVLE--G--LQYPFAVTSYGKNLYYTDWKTNSVIAMDL  236 (263)
T ss_dssp             ----TTEEEEEETTEEEEEEEEE--C--CCSEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred             ----CCEEEEEECCCCCeEEEEC--C--CCCcEEEEEECCEEEEEECCCCEEEEEEC
Confidence                4689999999876655432  2  23466788889999999999999999985

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.48  E-value=1.1e-12  Score=117.38  Aligned_cols=158  Identities=15%  Similarity=0.123  Sum_probs=118.9

Q ss_pred             ccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCCC
Q 017371          161 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK  240 (372)
Q Consensus       161 ~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~  240 (372)
                      .++.++++++||+||+++.                 ..++|+++|++ ++.+.+......|+++++++||+ +|+++...
T Consensus        28 ~~~e~iAv~pdG~l~vt~~-----------------~~~~I~~i~p~-g~~~~~~~~~~~~~gla~~~dG~-l~v~~~~~   88 (302)
T d2p4oa1          28 TFLENLASAPDGTIFVTNH-----------------EVGEIVSITPD-GNQQIHATVEGKVSGLAFTSNGD-LVATGWNA   88 (302)
T ss_dssp             CCEEEEEECTTSCEEEEET-----------------TTTEEEEECTT-CCEEEEEECSSEEEEEEECTTSC-EEEEEECT
T ss_pred             CCcCCEEECCCCCEEEEeC-----------------CCCEEEEEeCC-CCEEEEEcCCCCcceEEEcCCCC-eEEEecCC
Confidence            3678999999999999976                 46899999998 66777777777899999999998 99999888


Q ss_pred             CeEEEEEccCCCCcceeeeccC-CCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCc
Q 017371          241 FRCRKYWLKGERKGKLETFAEN-LPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGG  319 (372)
Q Consensus       241 ~~i~~~~~~g~~~~~~~~~~~~-~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~  319 (372)
                      +.+.+++..+.. +....+.+. ..+.|+++++|++|++|++...                                  .
T Consensus        89 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~----------------------------------~  133 (302)
T d2p4oa1          89 DSIPVVSLVKSD-GTVETLLTLPDAIFLNGITPLSDTQYLTADSY----------------------------------R  133 (302)
T ss_dssp             TSCEEEEEECTT-SCEEEEEECTTCSCEEEEEESSSSEEEEEETT----------------------------------T
T ss_pred             ceEEEEEecccc-cceeeccccCCccccceeEEccCCCEEeeccc----------------------------------c
Confidence            888888876532 223333322 2346889999999999999876                                  5


Q ss_pred             eEEEEECCCCcEEEEE-ECCCC------CeeccceeeEEECCEEEEEeCCCCeEEEEeCC
Q 017371          320 AHLIHVAEDGTIIRNL-VDPTG------QLMSFVTSGLQVDNHLYVISLTSNFIGKVQLS  372 (372)
Q Consensus       320 ~~v~~~~~~g~~~~~~-~~~~g------~~~~~~t~~~~~~g~L~igs~~~~~i~~~~~~  372 (372)
                      +.++++++++.....+ .++..      .....+..+..++++||++....+.|.+++++
T Consensus       134 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~~~~i~~~~~~  193 (302)
T d2p4oa1         134 GAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVD  193 (302)
T ss_dssp             TEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEEEEEEBC
T ss_pred             ccceeeeccCCcceeEecCCccceeeccCcccccccccccCCceeeecCCCCeEEecccc
Confidence            6888998776554433 22211      11223456677889999999999999998753

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.44  E-value=2.8e-10  Score=99.65  Aligned_cols=235  Identities=13%  Similarity=0.153  Sum_probs=157.9

Q ss_pred             EecCCCCCCCccEEEcCCCc-EEEEe-cCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCC-EEEEeCCCc-EEEEc-
Q 017371           72 KVGEGSVNHPEDASMDKNGV-IYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNANG-LHKVS-  144 (372)
Q Consensus        72 ~~~~g~~~~p~~i~~d~~G~-l~v~~-~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~-l~v~~~~~g-v~~~~-  144 (372)
                      .+..|  ..|.+++++++|+ ||+++ .++.|..||  +++..........|. +++++++|. ++++....+ +..++ 
T Consensus        27 ~i~~g--~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (301)
T d1l0qa2          27 TIPVG--SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQ-GVAVSPDGKQVYVTNMASSTLSVIDT  103 (301)
T ss_dssp             EEECS--SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEE-EEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             EEECC--CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccccc-ccccccccccccccccccceeeeccc
Confidence            44444  4799999999995 78877 688999999  555444344556788 999999987 555554443 45555 


Q ss_pred             CCC--cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcc
Q 017371          145 EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFAN  222 (372)
Q Consensus       145 ~~g--~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~  222 (372)
                      .++  ...+. .     ...+..+++.++|+.++...                .....+..++..+++..........|.
T Consensus       104 ~~~~~~~~~~-~-----~~~~~~~~~~~dg~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (301)
T d1l0qa2         104 TSNTVAGTVK-T-----GKSPLGLALSPDGKKLYVTN----------------NGDKTVSVINTVTKAVINTVSVGRSPK  161 (301)
T ss_dssp             TTTEEEEEEE-C-----SSSEEEEEECTTSSEEEEEE----------------TTTTEEEEEETTTTEEEEEEECCSSEE
T ss_pred             ccceeeeecc-c-----cccceEEEeecCCCeeeeee----------------ccccceeeeeccccceeeecccCCCce
Confidence            444  22221 1     12456788999997544321                135567888888777666666667788


Q ss_pred             eEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCC-EEEEEecCchhHHHHhhcchhHHH
Q 017371          223 GVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKH  301 (372)
Q Consensus       223 gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~r~  301 (372)
                      .++++++++.+|++......+..+.....+  .....  .....|.+++++++|+ +|++....                
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~g~~~~v~~~~~----------------  221 (301)
T d1l0qa2         162 GIAVTPDGTKVYVANFDSMSISVIDTVTNS--VIDTV--KVEAAPSGIAVNPEGTKAYVTNVDK----------------  221 (301)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEETTTTE--EEEEE--ECSSEEEEEEECTTSSEEEEEEECS----------------
T ss_pred             EEEeeccccceeeeccccccccccccccee--eeecc--cccCCcceeeccccccccccccccc----------------
Confidence            999999999999998877766666654321  11111  2334588999999996 55665441                


Q ss_pred             HHHhcCccccccccCCCceEEEEECC-CCcEEEEEECCCCCeeccceeeEEE-C-CEEEEEeCCCCeEEEEeCC
Q 017371          302 VLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQV-D-NHLYVISLTSNFIGKVQLS  372 (372)
Q Consensus       302 ~~~~~p~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~-~-g~L~igs~~~~~i~~~~~~  372 (372)
                                      ..+.|..+|. +++.+..+....     .+.++.+. + .+||+++...+.|.+++++
T Consensus       222 ----------------~~~~v~v~D~~t~~~~~~~~~~~-----~~~~va~spdg~~l~va~~~~~~i~v~D~~  274 (301)
T d1l0qa2         222 ----------------YFNTVSMIDTGTNKITARIPVGP-----DPAGIAVTPDGKKVYVALSFCNTVSVIDTA  274 (301)
T ss_dssp             ----------------SCCEEEEEETTTTEEEEEEECCS-----SEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             ----------------eeeeeeeeecCCCeEEEEEcCCC-----CEEEEEEeCCCCEEEEEECCCCeEEEEECC
Confidence                            1356888884 577777765422     35677775 3 5799999999999999863

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.39  E-value=7.6e-12  Score=111.64  Aligned_cols=174  Identities=13%  Similarity=0.133  Sum_probs=123.9

Q ss_pred             CCccEEEcCCCcEEEEecCCeEEEEe--CCceEEEEec-----CCCcccCeEEcCCCCEEEEeCCC-------cEEEEcC
Q 017371           80 HPEDASMDKNGVIYTATRDGWIKRLQ--DGTWVNWKFI-----DSQTLVGLTSTKEGHLIICDNAN-------GLHKVSE  145 (372)
Q Consensus        80 ~p~~i~~d~~G~l~v~~~~g~i~~~~--~g~~~~~~~~-----~~~p~~gl~~d~dG~l~v~~~~~-------gv~~~~~  145 (372)
                      .|.+++.+++|.||+++.+ +|++++  +|+++.+...     ..+++ .+.+|++|++|+++...       .++++. 
T Consensus        60 ~~~~i~~~~dg~l~va~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~n-d~~vd~~G~iw~~~~~~~~~~~~g~l~~~~-  136 (295)
T d2ghsa1          60 MGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHAELESDLPGNRSN-DGRMHPSGALWIGTMGRKAETGAGSIYHVA-  136 (295)
T ss_dssp             CEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEECSSTTCTTEEEE-EEEECTTSCEEEEEEETTCCTTCEEEEEEE-
T ss_pred             CcEEEEEecCCCEEEEEeC-ccEEeecccceeeEEeeeecCCCcccce-eeEECCCCCEEEEeccccccccceeEeeec-
Confidence            5788999999999999865 599999  6787776542     23567 89999999999997421       244443 


Q ss_pred             CC-cEEEeeecCCcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCC------CeEEEEe--
Q 017371          146 DG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS------NITTLVA--  215 (372)
Q Consensus       146 ~g-~~~l~~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t------~~~~~~~--  215 (372)
                      +| .+.+...     +..+|+++++++++ +|++|+                 ..++|++|+.+.      ++...+.  
T Consensus       137 ~g~~~~~~~~-----~~~~Ng~~~s~d~~~l~~~dt-----------------~~~~I~~~~~d~~~~~~~~~~~~~~~~  194 (295)
T d2ghsa1         137 KGKVTKLFAD-----ISIPNSICFSPDGTTGYFVDT-----------------KVNRLMRVPLDARTGLPTGKAEVFIDS  194 (295)
T ss_dssp             TTEEEEEEEE-----ESSEEEEEECTTSCEEEEEET-----------------TTCEEEEEEBCTTTCCBSSCCEEEEEC
T ss_pred             CCcEEEEeec-----cCCcceeeecCCCceEEEeec-----------------ccceeeEeeecccccccccceEEEecc
Confidence            45 4444332     35789999999884 899887                 467898886431      2222222  


Q ss_pred             -CCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCC-CCCceeEEc-CCC-CEEEEEec
Q 017371          216 -DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLP-GAPDNINLA-PDG-TFWIAIIK  284 (372)
Q Consensus       216 -~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~-g~p~~i~~d-~~G-~lwva~~~  284 (372)
                       .....|.|++++++|+ +|++....++|.+|+.+|.......     +| ..|.++++. +|+ .|||++..
T Consensus       195 ~~~~g~pdG~~vD~~Gn-lWva~~~~g~V~~~dp~G~~~~~i~-----lP~~~~T~~~FGG~d~~~LyvTta~  261 (295)
T d2ghsa1         195 TGIKGGMDGSVCDAEGH-IWNARWGEGAVDRYDTDGNHIARYE-----VPGKQTTCPAFIGPDASRLLVTSAR  261 (295)
T ss_dssp             TTSSSEEEEEEECTTSC-EEEEEETTTEEEEECTTCCEEEEEE-----CSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             CcccccccceEEcCCCC-EEeeeeCCCceEEecCCCcEeeEec-----CCCCceEEEEEeCCCCCEEEEEECC
Confidence             2345689999999997 9999988899999998875332221     22 247888885 454 69998865

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.25  E-value=4.5e-09  Score=91.70  Aligned_cols=166  Identities=18%  Similarity=0.220  Sum_probs=116.8

Q ss_pred             cEEEEe-cCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCC-EEEEeCC-CcEEEEc-CCC--cEEEeeecCCccccc
Q 017371           91 VIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA-NGLHKVS-EDG--VENFLSYVNGSKLRF  162 (372)
Q Consensus        91 ~l~v~~-~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~-l~v~~~~-~gv~~~~-~~g--~~~l~~~~~~~~~~~  162 (372)
                      ++|+++ .++.|..+|  ++++.......+.|. +++++|||+ ||++... ..|..+| .++  +..+..      ...
T Consensus         3 ~~yV~~~~~~~v~v~D~~t~~~~~~i~~g~~p~-~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~------~~~   75 (301)
T d1l0qa2           3 FAYIANSESDNISVIDVTSNKVTATIPVGSNPM-GAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA------GSS   75 (301)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSSSEE-EEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC------SSS
T ss_pred             EEEEEECCCCEEEEEECCCCeEEEEEECCCCce-EEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeec------ccc
Confidence            578887 788999999  677655455567899 999999997 7788654 4588888 566  333321      135


Q ss_pred             ccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCCCC
Q 017371          163 ANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKF  241 (372)
Q Consensus       163 ~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~  241 (372)
                      +.+++++++|. ++++..                 ....+..++..+++..........+..+++++|++.++++.....
T Consensus        76 ~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~  138 (301)
T d1l0qa2          76 PQGVAVSPDGKQVYVTNM-----------------ASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDK  138 (301)
T ss_dssp             EEEEEECTTSSEEEEEET-----------------TTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTT
T ss_pred             cccccccccccccccccc-----------------ccceeeecccccceeeeeccccccceEEEeecCCCeeeeeecccc
Confidence            67899999986 444432                 456788888888877666666677888999999999999888777


Q ss_pred             eEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCC-EEEEEec
Q 017371          242 RCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIK  284 (372)
Q Consensus       242 ~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwva~~~  284 (372)
                      .+..++....+  ....+.  ....|..++..+++. +|++...
T Consensus       139 ~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  178 (301)
T d1l0qa2         139 TVSVINTVTKA--VINTVS--VGRSPKGIAVTPDGTKVYVANFD  178 (301)
T ss_dssp             EEEEEETTTTE--EEEEEE--CCSSEEEEEECTTSSEEEEEETT
T ss_pred             ceeeeeccccc--eeeecc--cCCCceEEEeeccccceeeeccc
Confidence            78777765431  111221  223477888998885 6666544

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.17  E-value=1.7e-08  Score=89.32  Aligned_cols=245  Identities=13%  Similarity=0.152  Sum_probs=142.0

Q ss_pred             ceEecCCCCCCCccEEEcCCC-cEEEEe-cCCeEEEEe---C-CceEEE--EecCCCcccCeEEcCCCC-EEEEeCCCc-
Q 017371           70 FIKVGEGSVNHPEDASMDKNG-VIYTAT-RDGWIKRLQ---D-GTWVNW--KFIDSQTLVGLTSTKEGH-LIICDNANG-  139 (372)
Q Consensus        70 ~~~~~~g~~~~p~~i~~d~~G-~l~v~~-~~g~i~~~~---~-g~~~~~--~~~~~~p~~gl~~d~dG~-l~v~~~~~g-  139 (372)
                      ...+..+  ..|.+|++++|| .||++. .++.|..|+   + +..+..  ......|. ++++++||+ ||+++...+ 
T Consensus        30 ~~~~~~~--~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~-~l~~spDg~~l~v~~~~~~~  106 (333)
T d1ri6a_          30 TQVVDVP--GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLT-HISTDHQGQFVFVGSYNAGN  106 (333)
T ss_dssp             EEEEECS--SCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCS-EEEECTTSSEEEEEETTTTE
T ss_pred             EEEEcCC--CCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCce-EEEEcCCCCEEeecccCCCc
Confidence            3344443  478999999999 588887 578888776   2 222322  23445788 999999997 777765443 


Q ss_pred             EEEEc-CCC-cEEEeeecCCcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEE---
Q 017371          140 LHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL---  213 (372)
Q Consensus       140 v~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~---  213 (372)
                      +..++ .+. ..........  ...+.++.++++|+ +++++.                 ....+..++..+.....   
T Consensus       107 v~~~~~~~~~~~~~~~~~~~--~~~~~~v~~s~d~~~~~~~~~-----------------~~~~i~~~~~~~~~~~~~~~  167 (333)
T d1ri6a_         107 VSVTRLEDGLPVGVVDVVEG--LDGCHSANISPDNRTLWVPAL-----------------KQDRICLFTVSDDGHLVAQD  167 (333)
T ss_dssp             EEEEEEETTEEEEEEEEECC--CTTBCCCEECTTSSEEEEEEG-----------------GGTEEEEEEECTTSCEEEEE
T ss_pred             eeeeccccccceecccccCC--CccceEEEeeecceeeecccc-----------------ccceeeEEEeccCCcceeee
Confidence            44444 333 2222221111  23567889999996 444432                 23445555543321111   


Q ss_pred             ----EeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCC--CcceeeeccC-----CCCCCceeEEcCCCC-EEEE
Q 017371          214 ----VADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGER--KGKLETFAEN-----LPGAPDNINLAPDGT-FWIA  281 (372)
Q Consensus       214 ----~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~--~~~~~~~~~~-----~~g~p~~i~~d~~G~-lwva  281 (372)
                          .......|..+++++++..+|+..........+......  ..........     ....+..++++++|+ +|++
T Consensus       168 ~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~  247 (333)
T d1ri6a_         168 PAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYAC  247 (333)
T ss_dssp             EEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEE
T ss_pred             ceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeee
Confidence                112234567899999999999998877776666654321  1111111111     112456788999996 5554


Q ss_pred             EecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEECCCCcEEEEEE-CCCCCeeccceeeEEE--CCEEEE
Q 017371          282 IIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLV-DPTGQLMSFVTSGLQV--DNHLYV  358 (372)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~g~~~~~~~-~~~g~~~~~~t~~~~~--~g~L~i  358 (372)
                      ...                                .....++.++.++....... .+.+.   .+..+...  +.+||+
T Consensus       248 ~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~---~p~~~a~spDGk~l~v  292 (333)
T d1ri6a_         248 DRT--------------------------------ASLITVFSVSEDGSVLSKEGFQPTET---QPRGFNVDHSGKYLIA  292 (333)
T ss_dssp             ETT--------------------------------TTEEEEEEECTTSCCEEEEEEEECSS---SCCCEEECTTSSEEEE
T ss_pred             ccc--------------------------------CCeEEEEEEcCCCCEEEEEEEeCCCC---CeeEEEEeCCCCEEEE
Confidence            433                                11345666776665543322 12221   24555554  456999


Q ss_pred             EeCCCCeEEEEeC
Q 017371          359 ISLTSNFIGKVQL  371 (372)
Q Consensus       359 gs~~~~~i~~~~~  371 (372)
                      ++..++.|.++++
T Consensus       293 a~~~~~~v~v~~i  305 (333)
T d1ri6a_         293 AGQKSHHISVYEI  305 (333)
T ss_dssp             ECTTTCEEEEEEE
T ss_pred             EECCCCeEEEEEE
Confidence            9988898888754

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=99.16  E-value=2.4e-09  Score=100.67  Aligned_cols=168  Identities=16%  Similarity=0.195  Sum_probs=109.3

Q ss_pred             CceEecCCCCCCCccEEEcCCCcEEEEec-CCeEEEEe--CCceEEEEecC---------CCcccCeEEcCC----CCEE
Q 017371           69 DFIKVGEGSVNHPEDASMDKNGVIYTATR-DGWIKRLQ--DGTWVNWKFID---------SQTLVGLTSTKE----GHLI  132 (372)
Q Consensus        69 ~~~~~~~g~~~~p~~i~~d~~G~l~v~~~-~g~i~~~~--~g~~~~~~~~~---------~~p~~gl~~d~d----G~l~  132 (372)
                      .++++.++ +..|.+|++.++|+||++.. .|+|++++  +++.+.+....         +..+ ||+++|+    +.+|
T Consensus        18 ~~~~ia~~-L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLL-gia~~Pdf~~n~~iY   95 (450)
T d1crua_          18 DKKVILSN-LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLL-GFAFHPDFKNNPYIY   95 (450)
T ss_dssp             CEEEEECC-CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEE-EEEECTTTTTSCEEE
T ss_pred             EEEEEECC-CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCcee-eEEeCCCCccCCEEE
Confidence            57788887 89999999999999999995 79999998  55555543211         2234 8999874    6788


Q ss_pred             EEeCC-----------C--cEEEEc--CCC-----cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCC-Ccc-cc-
Q 017371          133 ICDNA-----------N--GLHKVS--EDG-----VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYL-PHE-YC-  189 (372)
Q Consensus       133 v~~~~-----------~--gv~~~~--~~g-----~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~-~~~-~~-  189 (372)
                      ++-..           .  -+.++.  .+.     .+.+....+....|.-..|++++||+|||+....-.. ... .. 
T Consensus        96 vsyt~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd~~~~~~~~~~~~  175 (450)
T d1crua_          96 ISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLP  175 (450)
T ss_dssp             EEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTTTTSGGGTTSC
T ss_pred             EEEecCCCCCcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecCCCcccccccccc
Confidence            86320           0  133333  222     1223333344444667789999999999986531100 000 00 


Q ss_pred             ------------cccccccCCCeEEEEeCCCCe-----------EEEEeCCccCcceEEEecCCCEEEEEeCC
Q 017371          190 ------------LDILEGKPHGQLLKYDPSSNI-----------TTLVADGFYFANGVALSRDEDYVVVCESW  239 (372)
Q Consensus       190 ------------~~~~~~~~~g~v~~~d~~t~~-----------~~~~~~~~~~~~gi~~~~dg~~l~v~~~~  239 (372)
                                  .........|.|+|++++...           .++++.++.+|.|++|+++|+ ||+++.+
T Consensus       176 ~~~~~~~~~~~~~~q~~~~~~Gkilri~~dg~~~~dnP~~~~~~~ei~a~G~RNp~g~~~~p~g~-l~~~e~G  247 (450)
T d1crua_         176 NQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTPNGK-LLQSEQG  247 (450)
T ss_dssp             CCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECTTSC-EEEEEEC
T ss_pred             cccccCcccccccccccccccCceEEeeccccccccccccccccceEEEeccccccceeecccce-eeecccc
Confidence                        000012335899999986432           256889999999999999876 9998864

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.14  E-value=3.4e-08  Score=90.11  Aligned_cols=244  Identities=14%  Similarity=0.073  Sum_probs=143.5

Q ss_pred             CCCccEEEcCCC-cEEEEecCCeEEEEe---CCceEEE--EecCCCcccCeEEcCCCC-EEEEeCC--C-cEEEEc--CC
Q 017371           79 NHPEDASMDKNG-VIYTATRDGWIKRLQ---DGTWVNW--KFIDSQTLVGLTSTKEGH-LIICDNA--N-GLHKVS--ED  146 (372)
Q Consensus        79 ~~p~~i~~d~~G-~l~v~~~~g~i~~~~---~g~~~~~--~~~~~~p~~gl~~d~dG~-l~v~~~~--~-gv~~~~--~~  146 (372)
                      ..|..|+++++| .||+++. +.+..+.   ++.....  ....+.|. .++++++|+ +||+...  . .+..+.  .+
T Consensus        40 ~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~-~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~  117 (365)
T d1jofa_          40 EPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPR-ANDADTNTRAIFLLAAKQPPYAVYANPFYKF  117 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGG-GGCTTSCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred             CCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcE-EEEECCCCCEEEEEEecCCCCEEEEeEccCC
Confidence            356779999888 5677654 4565554   5543322  34556788 999999985 5666532  1 233322  22


Q ss_pred             C--cEEEee-----------ecCCcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeC-CCCeE
Q 017371          147 G--VENFLS-----------YVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDP-SSNIT  211 (372)
Q Consensus       147 g--~~~l~~-----------~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~-~t~~~  211 (372)
                      +  ......           ...-.....+++++++|||+ +|++|.                 +..+|+.|+. .+++.
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~-----------------g~d~v~~~~~~~~g~~  180 (365)
T d1jofa_         118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADL-----------------TANKLWTHRKLASGEV  180 (365)
T ss_dssp             CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET-----------------TTTEEEEEEECTTSCE
T ss_pred             CCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeC-----------------CCCEEEEEEccCCCce
Confidence            2  111110           00001123567899999996 888765                 3456766642 22443


Q ss_pred             EEEe-----CCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceee---eccCCC-------------CCCcee
Q 017371          212 TLVA-----DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLET---FAENLP-------------GAPDNI  270 (372)
Q Consensus       212 ~~~~-----~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~---~~~~~~-------------g~p~~i  270 (372)
                      ....     .....|.+++++||++++|+++...+.|..|+.+..+......   ......             ..+..+
T Consensus       181 ~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  260 (365)
T d1jofa_         181 ELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVC  260 (365)
T ss_dssp             EEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEE
T ss_pred             eeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccce
Confidence            3221     2245688899999999999999999999999987653222111   000000             124568


Q ss_pred             EEcCCCC-EEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEECCCCcEEEEE---ECC-CCCeecc
Q 017371          271 NLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNL---VDP-TGQLMSF  345 (372)
Q Consensus       271 ~~d~~G~-lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~~g~~~~~~---~~~-~g~~~~~  345 (372)
                      .+++||. +|++.......                           ....-..++++.+|.+....   ..+ .|.   .
T Consensus       261 ~~spdG~~lyvsnr~~~~~---------------------------~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~---~  310 (365)
T d1jofa_         261 ALTFSGKYMFASSRANKFE---------------------------LQGYIAGFKLRDCGSIEKQLFLSPTPTSGG---H  310 (365)
T ss_dssp             EECTTSSEEEEEEEESSTT---------------------------SCCEEEEEEECTTSCEEEEEEEEECSSCCT---T
T ss_pred             EECCCCCEEEEEcccCCCc---------------------------cceEEEEEEecCCCceeeEeEeeEEEcCCC---C
Confidence            9999995 78887652100                           01123556777777664322   222 232   3


Q ss_pred             ceeeEEE---CCEEEEEeCCCCeEEEEeC
Q 017371          346 VTSGLQV---DNHLYVISLTSNFIGKVQL  371 (372)
Q Consensus       346 ~t~~~~~---~g~L~igs~~~~~i~~~~~  371 (372)
                      +..+...   +..||+++..++.|.++++
T Consensus       311 p~~i~~~p~~G~~l~va~~~s~~v~v~~~  339 (365)
T d1jofa_         311 SNAVSPCPWSDEWMAITDDQEGWLEIYRW  339 (365)
T ss_dssp             CCCEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred             ccEEEecCCCCCEEEEEeCCCCeEEEEEE
Confidence            4445543   4679999999999998875

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.06  E-value=1.4e-07  Score=83.26  Aligned_cols=172  Identities=10%  Similarity=0.065  Sum_probs=108.9

Q ss_pred             cEEEEe-cCCeEEEEe---CCceEEE--EecCCCcccCeEEcCCCC-EEEEeCC-CcEEEEc--CCC--cEEEeeecCCc
Q 017371           91 VIYTAT-RDGWIKRLQ---DGTWVNW--KFIDSQTLVGLTSTKEGH-LIICDNA-NGLHKVS--EDG--VENFLSYVNGS  158 (372)
Q Consensus        91 ~l~v~~-~~g~i~~~~---~g~~~~~--~~~~~~p~~gl~~d~dG~-l~v~~~~-~gv~~~~--~~g--~~~l~~~~~~~  158 (372)
                      .+|+++ .++.|+.|+   ++..+.+  ....+.+. +|+++|||+ ||++... ..+..++  .++  .+.......+ 
T Consensus         5 ~v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~-~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~-   82 (333)
T d1ri6a_           5 TVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQ-PMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP-   82 (333)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCC-CEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS-
T ss_pred             EEEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEe-EEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccC-
Confidence            588888 788888887   4444433  24557788 999999996 7788754 4455555  333  3333222121 


Q ss_pred             ccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEE---EeCCccCcceEEEecCCCEEE
Q 017371          159 KLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL---VADGFYFANGVALSRDEDYVV  234 (372)
Q Consensus       159 ~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~---~~~~~~~~~gi~~~~dg~~l~  234 (372)
                        ..|.++++++||+ ||+++.                 ..+.+..++.+......   .......+.++.+++|+++++
T Consensus        83 --~~p~~l~~spDg~~l~v~~~-----------------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~  143 (333)
T d1ri6a_          83 --GSLTHISTDHQGQFVFVGSY-----------------NAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLW  143 (333)
T ss_dssp             --SCCSEEEECTTSSEEEEEET-----------------TTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEE
T ss_pred             --CCceEEEEcCCCCEEeeccc-----------------CCCceeeeccccccceecccccCCCccceEEEeeecceeee
Confidence              3577899999996 666543                 24455555544333322   234455678899999999999


Q ss_pred             EEeCCCCeEEEEEccCCCCccee--eecc-CCCCCCceeEEcCCCCEEEEEe
Q 017371          235 VCESWKFRCRKYWLKGERKGKLE--TFAE-NLPGAPDNINLAPDGTFWIAII  283 (372)
Q Consensus       235 v~~~~~~~i~~~~~~g~~~~~~~--~~~~-~~~g~p~~i~~d~~G~lwva~~  283 (372)
                      +++.....|..++..........  .... .....|..+++++++.......
T Consensus       144 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~  195 (333)
T d1ri6a_         144 VPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVN  195 (333)
T ss_dssp             EEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEE
T ss_pred             ccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeec
Confidence            99988888998887643222111  1111 1223578899999997655443

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.01  E-value=2.2e-08  Score=91.42  Aligned_cols=187  Identities=16%  Similarity=0.095  Sum_probs=109.5

Q ss_pred             CCccEEEcCCC-cEEEEe---cCCeEEEEe---CC------------ceEEE-----EecCCCcccCeEEcCCCC-EEEE
Q 017371           80 HPEDASMDKNG-VIYTAT---RDGWIKRLQ---DG------------TWVNW-----KFIDSQTLVGLTSTKEGH-LIIC  134 (372)
Q Consensus        80 ~p~~i~~d~~G-~l~v~~---~~g~i~~~~---~g------------~~~~~-----~~~~~~p~~gl~~d~dG~-l~v~  134 (372)
                      +|.+++++++| .+|+..   ..+.|..+.   ++            .....     .....+++ +++++|||+ +|++
T Consensus        84 ~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h-~v~~sPdG~~l~v~  162 (365)
T d1jofa_          84 HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIH-GMVFDPTETYLYSA  162 (365)
T ss_dssp             SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEE-EEEECTTSSEEEEE
T ss_pred             CcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcce-EEEECCCCCEEEEe
Confidence            79999999988 456655   345565543   11            11110     01234578 999999997 8888


Q ss_pred             eCCC-cEEEEc--CCC-cEEEeeecCCcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCC
Q 017371          135 DNAN-GLHKVS--EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN  209 (372)
Q Consensus       135 ~~~~-gv~~~~--~~g-~~~l~~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~  209 (372)
                      +.+. .|..++  .+| ...............|.+++++++|+ +|+++.                 ..+.|..|+.+++
T Consensus       163 d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e-----------------~~~~V~v~~~~~~  225 (365)
T d1jofa_         163 DLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALME-----------------AGNRICEYVIDPA  225 (365)
T ss_dssp             ETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEET-----------------TTTEEEEEEECTT
T ss_pred             eCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEecc-----------------CCCEEEEEEecCC
Confidence            8663 466655  455 43332222222235788999999996 666643                 3456665554333


Q ss_pred             eEE---EEe-----------------CCccCcceEEEecCCCEEEEEeCCCCe-----EEEEEccCC-CCcceeeecc--
Q 017371          210 ITT---LVA-----------------DGFYFANGVALSRDEDYVVVCESWKFR-----CRKYWLKGE-RKGKLETFAE--  261 (372)
Q Consensus       210 ~~~---~~~-----------------~~~~~~~gi~~~~dg~~l~v~~~~~~~-----i~~~~~~g~-~~~~~~~~~~--  261 (372)
                      +..   ...                 .....+..++++|||++||+++.+.+.     |..|.++.. .......+..  
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~  305 (365)
T d1jofa_         226 THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP  305 (365)
T ss_dssp             TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECS
T ss_pred             CceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEE
Confidence            211   110                 001124578999999999999765433     777776532 1111111111  


Q ss_pred             CCCCCCceeEEcC-CCC-EEEEEec
Q 017371          262 NLPGAPDNINLAP-DGT-FWIAIIK  284 (372)
Q Consensus       262 ~~~g~p~~i~~d~-~G~-lwva~~~  284 (372)
                      ...+.|.+|++++ +|+ |||++..
T Consensus       306 ~~G~~p~~i~~~p~~G~~l~va~~~  330 (365)
T d1jofa_         306 TSGGHSNAVSPCPWSDEWMAITDDQ  330 (365)
T ss_dssp             SCCTTCCCEEECTTCTTEEEEECSS
T ss_pred             cCCCCccEEEecCCCCCEEEEEeCC
Confidence            1234799999986 786 7777654

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.00  E-value=1.2e-07  Score=88.31  Aligned_cols=173  Identities=8%  Similarity=-0.106  Sum_probs=111.5

Q ss_pred             EEEEe-cCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCC-EEEEeCCCcEEEEc-CCC-cEEEee-ecCCccccccc
Q 017371           92 IYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNANGLHKVS-EDG-VENFLS-YVNGSKLRFAN  164 (372)
Q Consensus        92 l~v~~-~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~-l~v~~~~~gv~~~~-~~g-~~~l~~-~~~~~~~~~~~  164 (372)
                      +++.. .+|.|..+|  .+++......+..|. ++++.|||+ +|+++....+..+| .++ .+.... .....+.....
T Consensus        34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~g~~~~-~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~  112 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTYEIKTVLDTGYAVH-ISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIET  112 (432)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEEECSSCEE-EEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCCCCee-EEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEE
Confidence            34554 688999999  566554444556788 999999996 66666556688888 555 322221 11111122333


Q ss_pred             ceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCC------------ccCcceEEEecCCC
Q 017371          165 DVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG------------FYFANGVALSRDED  231 (372)
Q Consensus       165 ~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~------------~~~~~gi~~~~dg~  231 (372)
                      ..++.+||+ +|++..                 ..+.+..+|.++++.......            .....++.+++||+
T Consensus       113 s~~~SpDG~~l~vs~~-----------------~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~  175 (432)
T d1qksa2         113 SKMEGWEDKYAIAGAY-----------------WPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRP  175 (432)
T ss_dssp             CCSTTCTTTEEEEEEE-----------------ETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSS
T ss_pred             ecccCCCCCEEEEEcC-----------------CCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCC
Confidence            445567996 677643                 457788899888876554321            11234578899999


Q ss_pred             EEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCC-EEEEEec
Q 017371          232 YVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIK  284 (372)
Q Consensus       232 ~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwva~~~  284 (372)
                      .++++....+.|..++....+......+.  ....|.+++++++|+ ++++...
T Consensus       176 ~~~vs~~~~~~i~~~d~~~~~~~~~~~i~--~g~~~~~~~~spdg~~~~va~~~  227 (432)
T d1qksa2         176 EFIVNVKETGKILLVDYTDLNNLKTTEIS--AERFLHDGGLDGSHRYFITAANA  227 (432)
T ss_dssp             EEEEEETTTTEEEEEETTCSSEEEEEEEE--CCSSEEEEEECTTSCEEEEEEGG
T ss_pred             EEEEEEccCCeEEEEEccCCCcceEEEEc--ccCccccceECCCCCEEEEeccc
Confidence            99999988899999987654322222222  223589999999997 5666544

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.97  E-value=2.9e-07  Score=80.96  Aligned_cols=149  Identities=11%  Similarity=-0.020  Sum_probs=97.0

Q ss_pred             cEEEEecCCeEEEEe--CCceEE-EEe--cCCCcccCeEEcCCCC-EEEEeCC-CcEEEEc-CCC--cEEEeeecCCccc
Q 017371           91 VIYTATRDGWIKRLQ--DGTWVN-WKF--IDSQTLVGLTSTKEGH-LIICDNA-NGLHKVS-EDG--VENFLSYVNGSKL  160 (372)
Q Consensus        91 ~l~v~~~~g~i~~~~--~g~~~~-~~~--~~~~p~~gl~~d~dG~-l~v~~~~-~gv~~~~-~~g--~~~l~~~~~~~~~  160 (372)
                      ++++++.+++|..||  +++... +..  ....|. +++++|||+ |||+... ..|..+| .+|  ...+.........
T Consensus         3 ~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~-~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~   81 (337)
T d1pbyb_           3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPM-VPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCC-CEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             EEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCcc-EEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence            466777889999999  555433 322  245678 999999997 6677654 4588899 667  3333222222234


Q ss_pred             ccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCC
Q 017371          161 RFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW  239 (372)
Q Consensus       161 ~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~  239 (372)
                      ..+.++++.+||+ +|++....      .............+..+|..+++..........+.++++++||+++|++.. 
T Consensus        82 ~~~~~v~~s~dg~~l~~~~~~~------~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-  154 (337)
T d1pbyb_          82 KSLFGAALSPDGKTLAIYESPV------RLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGR-  154 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEE------EECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESS-
T ss_pred             cceeeEEEcCCCcEEEEeecCC------cceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcC-
Confidence            5678999999985 55553221      001111223456788899988887776666677899999999998888752 


Q ss_pred             CCeEEEEEcc
Q 017371          240 KFRCRKYWLK  249 (372)
Q Consensus       240 ~~~i~~~~~~  249 (372)
                        .+..++..
T Consensus       155 --~~~~~d~~  162 (337)
T d1pbyb_         155 --DLHVMDPE  162 (337)
T ss_dssp             --SEEEEETT
T ss_pred             --Ccceeeee
Confidence              24445543

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.93  E-value=6.8e-07  Score=79.07  Aligned_cols=236  Identities=14%  Similarity=0.076  Sum_probs=144.4

Q ss_pred             CCCCCCCccEEEcCCCcEE-EEecCCeEEEEe--CCc--eEE-EEecCCCcccCeEEcCCCCEEEEeCC---CcEEEEc-
Q 017371           75 EGSVNHPEDASMDKNGVIY-TATRDGWIKRLQ--DGT--WVN-WKFIDSQTLVGLTSTKEGHLIICDNA---NGLHKVS-  144 (372)
Q Consensus        75 ~g~~~~p~~i~~d~~G~l~-v~~~~g~i~~~~--~g~--~~~-~~~~~~~p~~gl~~d~dG~l~v~~~~---~gv~~~~-  144 (372)
                      .+.-....++++.|+|++. +|+.+|.|..|+  .++  .+. +....+... .+++.++|.++++...   .-+..++ 
T Consensus        55 ~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~-~v~~s~d~~~l~~~~~~~~~~~~v~~~  133 (311)
T d1nr0a1          55 TEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVK-DISWDSESKRIAAVGEGRERFGHVFLF  133 (311)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEE-EEEECTTSCEEEEEECCSSCSEEEEET
T ss_pred             cCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCccc-ccccccccccccccccccccccccccc
Confidence            3433456788999999654 566899999998  332  222 222233445 8999999986655432   1244445 


Q ss_pred             CCC--cEEEeeecCCcccccccceEEccCCcE-EEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCcc-C
Q 017371          145 EDG--VENFLSYVNGSKLRFANDVVEASDGSL-YFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFY-F  220 (372)
Q Consensus       145 ~~g--~~~l~~~~~~~~~~~~~~l~~d~dG~i-~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~-~  220 (372)
                      ..+  ...+    .+. ...+..+++.++|.. +++                 +..++.|..+|..+++......... .
T Consensus       134 ~~~~~~~~l----~~h-~~~v~~v~~~~~~~~~l~s-----------------gs~d~~i~i~d~~~~~~~~~~~~~~~~  191 (311)
T d1nr0a1         134 DTGTSNGNL----TGQ-ARAMNSVDFKPSRPFRIIS-----------------GSDDNTVAIFEGPPFKFKSTFGEHTKF  191 (311)
T ss_dssp             TTCCBCBCC----CCC-SSCEEEEEECSSSSCEEEE-----------------EETTSCEEEEETTTBEEEEEECCCSSC
T ss_pred             ccccccccc----ccc-ccccccccccccceeeecc-----------------ccccccccccccccccccccccccccc
Confidence            444  2222    111 134567889998864 443                 2246778889988777665554433 3


Q ss_pred             cceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeecc---CC---CCCCceeEEcCCCCEEEEEecCchhHHHHhh
Q 017371          221 ANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAE---NL---PGAPDNINLAPDGTFWIAIIKLDARRMKILN  294 (372)
Q Consensus       221 ~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~---~~---~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~  294 (372)
                      .+.++++|+++.++.+. .++.|..++.....  ....+..   ..   .+....++++++|++.++...          
T Consensus       192 i~~v~~~p~~~~l~~~~-~d~~v~~~d~~~~~--~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~----------  258 (311)
T d1nr0a1         192 VHSVRYNPDGSLFASTG-GDGTIVLYNGVDGT--KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASA----------  258 (311)
T ss_dssp             EEEEEECTTSSEEEEEE-TTSCEEEEETTTCC--EEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEET----------
T ss_pred             ccccccCcccccccccc-cccccccccccccc--ccccccccccccccccccccccccCCCCCEEEEEeC----------
Confidence            36889999999666554 45668878775431  1111111   11   122446888999987776554          


Q ss_pred             cchhHHHHHHhcCccccccccCCCceEEEEEC-CCCcEEEEEECCCCCeeccceeeEEECCEEEEEeCCCCeEEEEeCC
Q 017371          295 SSKLIKHVLAAYPKLFSQFITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQLS  372 (372)
Q Consensus       295 ~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~igs~~~~~i~~~~~~  372 (372)
                                              .+.|..+| .+++.++.+...... .....++...++.|+.++. ...|..+++|
T Consensus       259 ------------------------Dg~v~iwd~~t~~~~~~l~~~~~~-~~~~~~~~~~~~~l~s~s~-dG~i~~wd~d  311 (311)
T d1nr0a1         259 ------------------------DKTIKIWNVATLKVEKTIPVGTRI-EDQQLGIIWTKQALVSISA-NGFINFVNPE  311 (311)
T ss_dssp             ------------------------TSEEEEEETTTTEEEEEEECCSSG-GGCEEEEEECSSCEEEEET-TCCEEEEETT
T ss_pred             ------------------------CCeEEEEECCCCcEEEEEECCCCc-cceEEEEEecCCEEEEEEC-CCEEEEEeCC
Confidence                                    45677677 568888887654332 2234456666778888885 5788888875

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.89  E-value=1.3e-07  Score=82.55  Aligned_cols=187  Identities=19%  Similarity=0.262  Sum_probs=115.2

Q ss_pred             ceEecCCCCCCCccEEEcCCCc-EEEEecCCeEEEEe--CCceEEEE-ecCCCcccCeEEcCCCCEEEEeCCCcEEEEc-
Q 017371           70 FIKVGEGSVNHPEDASMDKNGV-IYTATRDGWIKRLQ--DGTWVNWK-FIDSQTLVGLTSTKEGHLIICDNANGLHKVS-  144 (372)
Q Consensus        70 ~~~~~~g~~~~p~~i~~d~~G~-l~v~~~~g~i~~~~--~g~~~~~~-~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~-  144 (372)
                      +.++..|.-..-.+|++.++|. |+.++.||.|..|+  +++..... .....+..++++.++|+++++.....+..++ 
T Consensus         4 ~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~~~   83 (299)
T d1nr0a2           4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPA   83 (299)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECS
T ss_pred             cceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccceeeEEEecc
Confidence            4455567666778899999985 55566899999999  55533322 2222333389999999998887777787777 


Q ss_pred             CCC-cE---EEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccC
Q 017371          145 EDG-VE---NFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYF  220 (372)
Q Consensus       145 ~~g-~~---~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~  220 (372)
                      ... ..   .......    ..+..+++.++|++.++.                  ..+.+..++..  +...... ...
T Consensus        84 ~~~~~~~~~~~~~~~~----~~~~~~~~s~~g~~~~~~------------------~~~~i~~~~~~--~~~~~~~-~~~  138 (299)
T d1nr0a2          84 GGSGVDSSKAVANKLS----SQPLGLAVSADGDIAVAA------------------CYKHIAIYSHG--KLTEVPI-SYN  138 (299)
T ss_dssp             SSSSSCTTSCCEEECS----SCEEEEEECTTSSCEEEE------------------ESSEEEEEETT--EEEEEEC-SSC
T ss_pred             CCcccccccccccccc----cccccccccccccccccc------------------ccccccccccc--ccccccc-ccc
Confidence            222 11   1111111    244578888999876653                  23457777743  3333222 233


Q ss_pred             cceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 017371          221 ANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       221 ~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~  284 (372)
                      ...++++++++.+++.. .++.|..+++.+.+.......  ........++++++|.+.++...
T Consensus       139 ~~~~~~s~~~~~l~~g~-~dg~i~~~d~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~  199 (299)
T d1nr0a2         139 SSCVALSNDKQFVAVGG-QDSKVHVYKLSGASVSEVKTI--VHPAEITSVAFSNNGAFLVATDQ  199 (299)
T ss_dssp             EEEEEECTTSCEEEEEE-TTSEEEEEEEETTEEEEEEEE--ECSSCEEEEEECTTSSEEEEEET
T ss_pred             ccccccccccccccccc-ccccccccccccccccccccc--ccccccccccccccccccccccc
Confidence            45788999998666554 466788888875432222222  12334567888999987666544

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.83  E-value=1.3e-06  Score=77.12  Aligned_cols=183  Identities=9%  Similarity=-0.040  Sum_probs=106.7

Q ss_pred             CCccEEEcCCCcEEEEecCCeEEEEe--CCceE-EEEecCCCcccCeEEcCCCCEEEEeCC-CcEEEEc-CCC--cEEEe
Q 017371           80 HPEDASMDKNGVIYTATRDGWIKRLQ--DGTWV-NWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG--VENFL  152 (372)
Q Consensus        80 ~p~~i~~d~~G~l~v~~~~g~i~~~~--~g~~~-~~~~~~~~p~~gl~~d~dG~l~v~~~~-~gv~~~~-~~g--~~~l~  152 (372)
                      .|..++.+++|...+...++.|+.++  +++.. .+..-.+... .+++.|+|++.++... .-|..++ .++  .... 
T Consensus        19 ~~~~~a~~~~g~~l~~~~~~~v~i~~~~~~~~~~~~~~H~~~v~-~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~-   96 (311)
T d1nr0a1          19 TAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTT-VAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKT-   96 (311)
T ss_dssp             CCCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEE-EEEECTTSSEEEEEETTSEEEEEESSSTTCCEEE-
T ss_pred             CeEEEEEcCCCCEEEEEeCCEEEEEECCCCceeEEEcCCCCCEE-EEEEeCCCCeEeccccCceEeeeeeecccccccc-
Confidence            45678999988655544566788888  44433 3322223445 8999999987766444 4466677 443  2111 


Q ss_pred             eecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCC-ccCcceEEEecCCC
Q 017371          153 SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSRDED  231 (372)
Q Consensus       153 ~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~-~~~~~gi~~~~dg~  231 (372)
                       ...+. ...+..+++.++|+.+++-..               .....+..++.++++......+ ......++|+|+++
T Consensus        97 -~~~~~-~~~v~~v~~s~d~~~l~~~~~---------------~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~  159 (311)
T d1nr0a1          97 -TIPVF-SGPVKDISWDSESKRIAAVGE---------------GRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRP  159 (311)
T ss_dssp             -EEECS-SSCEEEEEECTTSCEEEEEEC---------------CSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSS
T ss_pred             -ccccc-cCccccccccccccccccccc---------------cccccccccccccccccccccccccccccccccccce
Confidence             11111 124678999999987765321               0122233444444443222222 22346788999999


Q ss_pred             EEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 017371          232 YVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       232 ~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~  284 (372)
                      +++++.+.++.|..|+..+.   +..............+..+++|++.++...
T Consensus       160 ~~l~sgs~d~~i~i~d~~~~---~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~  209 (311)
T d1nr0a1         160 FRIISGSDDNTVAIFEGPPF---KFKSTFGEHTKFVHSVRYNPDGSLFASTGG  209 (311)
T ss_dssp             CEEEEEETTSCEEEEETTTB---EEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             eeeccccccccccccccccc---ccccccccccccccccccCccccccccccc
Confidence            87887766777888887542   111111122233567889999988776654

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=4.8e-06  Score=73.85  Aligned_cols=224  Identities=10%  Similarity=-0.006  Sum_probs=138.3

Q ss_pred             CccEEEcCCCc-EEEEecCCeEEEEe-C-Cc--eEE-EEecCCCcccCeEEcCCCCEEEEeCC-CcEEEEc-CCC-cEEE
Q 017371           81 PEDASMDKNGV-IYTATRDGWIKRLQ-D-GT--WVN-WKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG-VENF  151 (372)
Q Consensus        81 p~~i~~d~~G~-l~v~~~~g~i~~~~-~-g~--~~~-~~~~~~~p~~gl~~d~dG~l~v~~~~-~gv~~~~-~~g-~~~l  151 (372)
                      -.++++.++|. |.++..+|.|..|+ . ..  ... +........ .+++.+++.++++... ..+..++ .++ ....
T Consensus       100 I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~  178 (337)
T d1gxra_         100 IRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACY-ALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQ  178 (337)
T ss_dssp             EEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEE-EEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             EEEEEEcCCCCEEEEeeccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccc
Confidence            45789999885 55566899999998 3 22  221 222223344 7788999987665433 4577777 555 3222


Q ss_pred             eeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCC
Q 017371          152 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDED  231 (372)
Q Consensus       152 ~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~  231 (372)
                      ....    ...+..+++.++|+..++-                 ..++.+..+|..+++.............++++++++
T Consensus       179 ~~~~----~~~v~~l~~s~~~~~~~~~-----------------~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~  237 (337)
T d1gxra_         179 FQGH----TDGASCIDISNDGTKLWTG-----------------GLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGE  237 (337)
T ss_dssp             ECCC----SSCEEEEEECTTSSEEEEE-----------------ETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSS
T ss_pred             cccc----ccccccccccccccccccc-----------------cccccccccccccceeecccccccceEEEEEccccc
Confidence            1111    1245678888888755542                 246788889988776544443334456788999999


Q ss_pred             EEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcchhHHHHHHhcCcccc
Q 017371          232 YVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFS  311 (372)
Q Consensus       232 ~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~  311 (372)
                      .++++. .+..+..++++....  . ... ...+....+++.++|++.++...                           
T Consensus       238 ~l~~~~-~d~~i~i~d~~~~~~--~-~~~-~~~~~i~~v~~s~~g~~l~s~s~---------------------------  285 (337)
T d1gxra_         238 WLAVGM-ESSNVEVLHVNKPDK--Y-QLH-LHESCVLSLKFAYCGKWFVSTGK---------------------------  285 (337)
T ss_dssp             EEEEEE-TTSCEEEEETTSSCE--E-EEC-CCSSCEEEEEECTTSSEEEEEET---------------------------
T ss_pred             ccceec-ccccccccccccccc--c-ccc-ccccccceEEECCCCCEEEEEeC---------------------------
Confidence            766654 456788888765321  1 111 12234567889999997777655                           


Q ss_pred             ccccCCCceEEEEEC-CCCcEEEEEECCCCCeeccceeeEEE-CC-EEEEEeCCCCeEEEEeC
Q 017371          312 QFITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQV-DN-HLYVISLTSNFIGKVQL  371 (372)
Q Consensus       312 ~~~~~~~~~~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~-~g-~L~igs~~~~~i~~~~~  371 (372)
                             .+.|..++ .+++.+..+...     ..++++... ++ .|..|+ ....|.+++|
T Consensus       286 -------Dg~i~iwd~~~~~~~~~~~~~-----~~v~~~~~s~d~~~l~t~s-~D~~I~vWdl  335 (337)
T d1gxra_         286 -------DNLLNAWRTPYGASIFQSKES-----SSVLSCDISVDDKYIVTGS-GDKKATVYEV  335 (337)
T ss_dssp             -------TSEEEEEETTTCCEEEEEECS-----SCEEEEEECTTSCEEEEEE-TTSCEEEEEE
T ss_pred             -------CCeEEEEECCCCCEEEEccCC-----CCEEEEEEeCCCCEEEEEe-CCCeEEEEEE
Confidence                   45677776 457777766532     246677765 34 455555 4466777764

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.76  E-value=4.4e-06  Score=76.94  Aligned_cols=185  Identities=7%  Similarity=-0.028  Sum_probs=111.9

Q ss_pred             CCccEEEcCC--CcEEEEe-cCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCC-EEEEeCCCcEEEEc-CCC-cEEE
Q 017371           80 HPEDASMDKN--GVIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNANGLHKVS-EDG-VENF  151 (372)
Q Consensus        80 ~p~~i~~d~~--G~l~v~~-~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~-l~v~~~~~gv~~~~-~~g-~~~l  151 (372)
                      .|..+.++.+  +.++++. .+|.|..||  +++.......+..|. ++++.|||+ ||++.....+..+| .++ ....
T Consensus        20 ~p~~~~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~~~~-~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~   98 (426)
T d1hzua2          20 RPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVH-ISRMSASGRYLLVIGRDARIDMIDLWAKEPTKV   98 (426)
T ss_dssp             SCSSCCSCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECCSSEE-EEEECTTSCEEEEEETTSEEEEEETTSSSCEEE
T ss_pred             CCCcccccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeCCCCee-EEEECCCCCEEEEEeCCCCEEEEEccCCceeEE
Confidence            3444444433  3455655 689999999  666544344456788 999999997 56666555688888 555 3333


Q ss_pred             eeecCC-cccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCc-----------
Q 017371          152 LSYVNG-SKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF-----------  218 (372)
Q Consensus       152 ~~~~~~-~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~-----------  218 (372)
                      .....+ .....+..+++.+||+ ++++..                 ..+.+..+|..+++........           
T Consensus        99 ~~i~~~~~~~~~~~s~~~spDG~~l~v~~~-----------------~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~  161 (426)
T d1hzua2          99 AEIKIGIEARSVESSKFKGYEDRYTIAGAY-----------------WPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHP  161 (426)
T ss_dssp             EEEECCSEEEEEEECCSTTCTTTEEEEEEE-----------------ESSEEEEEETTTCCEEEEEECCEECSSSCCEES
T ss_pred             EEEeCCCCCcceEEeeeecCCCCEEEEeec-----------------CCCeEEEEcCCccceeEEeeccCCCccceeecC
Confidence            221111 1122333455567896 566533                 3456777888777655433211           


Q ss_pred             -cCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 017371          219 -YFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       219 -~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~  284 (372)
                       .....++.++|+..++++......+..+..............  ....|.++.++++|+++.....
T Consensus       162 ~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~a~~  226 (426)
T d1hzua2         162 EPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG--AAPFLADGGWDSSHRYFMTAAN  226 (426)
T ss_dssp             CCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEE--CCSSEEEEEECTTSCEEEEEET
T ss_pred             CCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEec--cCCccEeeeECCCCcEEEeeee
Confidence             112346778889988888888888877766543222222221  2235789999999987666543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.74  E-value=1.5e-06  Score=76.45  Aligned_cols=145  Identities=17%  Similarity=0.127  Sum_probs=87.0

Q ss_pred             CCCccEEEcCCCc-EEEEe-cCCeEEEEe--CCceEE-EEec------CCCcccCeEEcCCCC-EEEEeCCC--------
Q 017371           79 NHPEDASMDKNGV-IYTAT-RDGWIKRLQ--DGTWVN-WKFI------DSQTLVGLTSTKEGH-LIICDNAN--------  138 (372)
Q Consensus        79 ~~p~~i~~d~~G~-l~v~~-~~g~i~~~~--~g~~~~-~~~~------~~~p~~gl~~d~dG~-l~v~~~~~--------  138 (372)
                      .+|.++++++||+ +|++. .++.|..+|  .++... +...      ...|. ++++++||+ +|++....        
T Consensus        40 ~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~-~v~~s~DG~~l~v~~~~~~~~~~~~~  118 (346)
T d1jmxb_          40 FGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMY-SFAISPDGKEVYATVNPTQRLNDHYV  118 (346)
T ss_dssp             CSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSS-CEEECTTSSEEEEEEEEEEECSSCEE
T ss_pred             CCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceE-EEEEecCCCEEEEEecCCcceeeeec
Confidence            4799999999985 77877 688999999  554332 2211      12467 999999996 67765321        


Q ss_pred             ----cEEEEc-CCC--cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeE
Q 017371          139 ----GLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT  211 (372)
Q Consensus       139 ----gv~~~~-~~g--~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~  211 (372)
                          .+..++ .++  ...+.....   ......+...+++++|+++                    +.+..++..+++.
T Consensus       119 ~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~  175 (346)
T d1jmxb_         119 VKPPRLEVFSTADGLEAKPVRTFPM---PRQVYLMRAADDGSLYVAG--------------------PDIYKMDVKTGKY  175 (346)
T ss_dssp             ECCCEEEEEEGGGGGGBCCSEEEEC---CSSCCCEEECTTSCEEEES--------------------SSEEEECTTTCCE
T ss_pred             cCcceEEEEecccceeeeEEEeeec---cCceEEEEecCCCEEEEeC--------------------CcceEEEccCCCE
Confidence                122232 222  110000000   0123345556777888753                    3466777777776


Q ss_pred             EEEeCCccCcceEEEecCCCEEEEEeCCCCeEEEEE
Q 017371          212 TLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYW  247 (372)
Q Consensus       212 ~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~  247 (372)
                      .........+.++++++++..+|+.......+...+
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (346)
T d1jmxb_         176 TVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLY  211 (346)
T ss_dssp             EEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEE
T ss_pred             EEEEecCCCccceEEeccccEEEEEecCCCceEeee
Confidence            655555556677788888887777776665555443

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.71  E-value=1.3e-06  Score=75.86  Aligned_cols=179  Identities=13%  Similarity=0.107  Sum_probs=109.8

Q ss_pred             CCccEEEcCCCcEEEEecCCeEEEEe-CCc-----eEEEEecCCCcccCeEEcCCCCEEEEeCCCcEEEEcCCCcEEEee
Q 017371           80 HPEDASMDKNGVIYTATRDGWIKRLQ-DGT-----WVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDGVENFLS  153 (372)
Q Consensus        80 ~p~~i~~d~~G~l~v~~~~g~i~~~~-~g~-----~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~~~g~~~l~~  153 (372)
                      ...++++.++|.++++..++.+..++ .+.     ..........+. ++++.++|++.++.....+..++.........
T Consensus        57 ~v~~v~~~~~g~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~  135 (299)
T d1nr0a2          57 MITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPL-GLAVSADGDIAVAACYKHIAIYSHGKLTEVPI  135 (299)
T ss_dssp             CEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEE-EEEECTTSSCEEEEESSEEEEEETTEEEEEEC
T ss_pred             cEEEEEeeccceeecccceeeEEEeccCCcccccccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence            34678899999999988899998888 221     111222344567 89999999877776666666666322221111


Q ss_pred             ecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEe--CCccCcceEEEecCCC
Q 017371          154 YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA--DGFYFANGVALSRDED  231 (372)
Q Consensus       154 ~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~--~~~~~~~gi~~~~dg~  231 (372)
                      .      .....+++.+++++.++-                 ..++.|..+|..+++...+.  ..-.....++++++++
T Consensus       136 ~------~~~~~~~~s~~~~~l~~g-----------------~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~  192 (299)
T d1nr0a2         136 S------YNSSCVALSNDKQFVAVG-----------------GQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGA  192 (299)
T ss_dssp             S------SCEEEEEECTTSCEEEEE-----------------ETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSS
T ss_pred             c------cccccccccccccccccc-----------------cccccccccccccccccccccccccccccccccccccc
Confidence            1      123467888888766542                 24678888887766654322  1223346788999999


Q ss_pred             EEEEEeCCCCeEEEEEccCCCCc-ceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 017371          232 YVVVCESWKFRCRKYWLKGERKG-KLETFAENLPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       232 ~l~v~~~~~~~i~~~~~~g~~~~-~~~~~~~~~~g~p~~i~~d~~G~lwva~~~  284 (372)
                      +++.+. .+..|..+++...... ....+. ........+++.++|++.++...
T Consensus       193 ~l~~~~-~d~~i~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~sgs~  244 (299)
T d1nr0a2         193 FLVATD-QSRKVIPYSVANNFELAHTNSWT-FHTAKVACVSWSPDNVRLATGSL  244 (299)
T ss_dssp             EEEEEE-TTSCEEEEEGGGTTEESCCCCCC-CCSSCEEEEEECTTSSEEEEEET
T ss_pred             cccccc-ccccccccccccccccccccccc-ccccccccccccccccceEEEcC
Confidence            776655 4567888887643211 111111 11223456788999987766544

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.63  E-value=1.1e-05  Score=74.62  Aligned_cols=163  Identities=11%  Similarity=0.023  Sum_probs=105.3

Q ss_pred             ceEecCCCCCCCccEEEcCCC-cEEEEecCCeEEEEe--CCceEEE--EecCCCcccCeEE----cCCCC-EEEEeCC-C
Q 017371           70 FIKVGEGSVNHPEDASMDKNG-VIYTATRDGWIKRLQ--DGTWVNW--KFIDSQTLVGLTS----TKEGH-LIICDNA-N  138 (372)
Q Consensus        70 ~~~~~~g~~~~p~~i~~d~~G-~l~v~~~~g~i~~~~--~g~~~~~--~~~~~~p~~gl~~----d~dG~-l~v~~~~-~  138 (372)
                      +..+..|  ..|+++++.+|| ++|+++.+|.|..++  .++.+..  ...+..+. ++++    .+||+ ||++... .
T Consensus        55 ~~~~~~g--~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~-~~~~s~~~SpDG~~l~vs~~~~~  131 (432)
T d1qksa2          55 KTVLDTG--YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEAR-SIETSKMEGWEDKYAIAGAYWPP  131 (432)
T ss_dssp             EEEEECS--SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEE-EEEECCSTTCTTTEEEEEEEETT
T ss_pred             EEEEeCC--CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCC-CeEEecccCCCCCEEEEEcCCCC
Confidence            4445555  379999999999 578888899999999  4543222  23344555 6555    46897 6776544 5


Q ss_pred             cEEEEc-CCC--cEEEeee---cCC---cccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCC
Q 017371          139 GLHKVS-EDG--VENFLSY---VNG---SKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN  209 (372)
Q Consensus       139 gv~~~~-~~g--~~~l~~~---~~~---~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~  209 (372)
                      .+..+| .++  ...+...   ...   ........++++++|..++..                ....+.++.+|..+.
T Consensus       132 ~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs----------------~~~~~~i~~~d~~~~  195 (432)
T d1qksa2         132 QYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVN----------------VKETGKILLVDYTDL  195 (432)
T ss_dssp             EEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEE----------------ETTTTEEEEEETTCS
T ss_pred             eEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEE----------------EccCCeEEEEEccCC
Confidence            688888 555  3333211   010   011233457778888654422                225678999987765


Q ss_pred             eEEEE--eCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCC
Q 017371          210 ITTLV--ADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGE  251 (372)
Q Consensus       210 ~~~~~--~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~  251 (372)
                      +...+  ...-..|.+++++|||++++++....+.+..++.+..
T Consensus       196 ~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~  239 (432)
T d1qksa2         196 NNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG  239 (432)
T ss_dssp             SEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred             CcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccc
Confidence            43322  2233568899999999999999988888998887653

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=6e-05  Score=66.45  Aligned_cols=181  Identities=12%  Similarity=0.106  Sum_probs=109.1

Q ss_pred             CCCccEEEcCCCcEEEEecCCeEEEEe--CC-c---eEEEEe-c-CCCcccCeEEcCCCCEEEEeCC-CcEEEEc-CCC-
Q 017371           79 NHPEDASMDKNGVIYTATRDGWIKRLQ--DG-T---WVNWKF-I-DSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG-  147 (372)
Q Consensus        79 ~~p~~i~~d~~G~l~v~~~~g~i~~~~--~g-~---~~~~~~-~-~~~p~~gl~~d~dG~l~v~~~~-~gv~~~~-~~g-  147 (372)
                      ....+++++++|.+.++..+|.|..|+  .+ .   ...... . .+... .+++.++|+++++... ..|..++ ... 
T Consensus        52 ~~V~~v~fs~~g~~latg~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~-~v~~s~dg~~l~s~~~dg~i~iwd~~~~~  130 (337)
T d1gxra_          52 EVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIR-SCKLLPDGCTLIVGGEASTLSIWDLAAPT  130 (337)
T ss_dssp             SCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEE-EEEECTTSSEEEEEESSSEEEEEECCCC-
T ss_pred             CcEEEEEECCCCCEEEEEECCEEEEEEccCCcccceeEEeeecCCCCcEE-EEEEcCCCCEEEEeecccccccccccccc
Confidence            467889999999655544588888888  22 1   222211 1 12234 8999999986665434 4466677 332 


Q ss_pred             cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCcc-CcceEEE
Q 017371          148 VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFY-FANGVAL  226 (372)
Q Consensus       148 ~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~-~~~gi~~  226 (372)
                      .+.... ..+. ......+++.+++.+.++-.                 ..+.+..+|..+++......... ....+++
T Consensus       131 ~~~~~~-~~~~-~~~v~~~~~~~~~~~l~s~~-----------------~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~  191 (337)
T d1gxra_         131 PRIKAE-LTSS-APACYALAISPDSKVCFSCC-----------------SDGNIAVWDLHNQTLVRQFQGHTDGASCIDI  191 (337)
T ss_dssp             -EEEEE-EECS-SSCEEEEEECTTSSEEEEEE-----------------TTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred             cccccc-cccc-cccccccccccccccccccc-----------------ccccccccccccccccccccccccccccccc
Confidence            222211 1111 12345678889998777532                 45678888888777665544432 3457889


Q ss_pred             ecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEec
Q 017371          227 SRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       227 ~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~  284 (372)
                      +++++.++++. .++.+..+++...+  ....+  ...+....++++++|++.++...
T Consensus       192 s~~~~~~~~~~-~d~~v~i~d~~~~~--~~~~~--~~~~~i~~l~~~~~~~~l~~~~~  244 (337)
T d1gxra_         192 SNDGTKLWTGG-LDNTVRSWDLREGR--QLQQH--DFTSQIFSLGYCPTGEWLAVGME  244 (337)
T ss_dssp             CTTSSEEEEEE-TTSEEEEEETTTTE--EEEEE--ECSSCEEEEEECTTSSEEEEEET
T ss_pred             ccccccccccc-ccccccccccccce--eeccc--ccccceEEEEEcccccccceecc
Confidence            99999777665 45678888875432  11222  12333567888999977665443

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.52  E-value=3.5e-06  Score=73.98  Aligned_cols=138  Identities=19%  Similarity=0.166  Sum_probs=86.4

Q ss_pred             CeEEcCCCCEEEE-eCCCcEEEEc-CCC--cEEEeeecCCcccccccceEEccCCc-EEEEeCCCCCCCccccccccccc
Q 017371          122 GLTSTKEGHLIIC-DNANGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGK  196 (372)
Q Consensus       122 gl~~d~dG~l~v~-~~~~gv~~~~-~~g--~~~l~~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~  196 (372)
                      |+++.++|+.+++ .....|..+| .++  +..+.  .+.  ...|.++++++||+ +|++..                 
T Consensus         1 g~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~--~~~--~~~p~~l~~spDG~~l~v~~~-----------------   59 (346)
T d1jmxb_           1 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCV--MPD--KFGPGTAMMAPDNRTAYVLNN-----------------   59 (346)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEE--CSS--CCSSCEEEECTTSSEEEEEET-----------------
T ss_pred             CccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEE--cCC--CCCcceEEECCCCCEEEEEEC-----------------
Confidence            5778888886665 4446799999 666  33221  121  13578999999996 677754                 


Q ss_pred             CCCeEEEEeCCCCeEEEEeCC-------ccCcceEEEecCCCEEEEEeC-----------CCCeEEEEEccCCCCcc-ee
Q 017371          197 PHGQLLKYDPSSNITTLVADG-------FYFANGVALSRDEDYVVVCES-----------WKFRCRKYWLKGERKGK-LE  257 (372)
Q Consensus       197 ~~g~v~~~d~~t~~~~~~~~~-------~~~~~gi~~~~dg~~l~v~~~-----------~~~~i~~~~~~g~~~~~-~~  257 (372)
                      ..+.|+.+|.++++.......       ...|.++++++||+++|++..           ....+..++....+... ..
T Consensus        60 ~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  139 (346)
T d1jmxb_          60 HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVR  139 (346)
T ss_dssp             TTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSE
T ss_pred             CCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEE
Confidence            467899999998876543321       235789999999999999864           23455556654322111 11


Q ss_pred             eeccCCCCCCceeEEcCCCCEEEEE
Q 017371          258 TFAENLPGAPDNINLAPDGTFWIAI  282 (372)
Q Consensus       258 ~~~~~~~g~p~~i~~d~~G~lwva~  282 (372)
                      ..  ..+.....+....+|.+++..
T Consensus       140 ~~--~~~~~~~~~~~~~~~~~~~~~  162 (346)
T d1jmxb_         140 TF--PMPRQVYLMRAADDGSLYVAG  162 (346)
T ss_dssp             EE--ECCSSCCCEEECTTSCEEEES
T ss_pred             ee--eccCceEEEEecCCCEEEEeC
Confidence            11  112223445566777888764

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.51  E-value=6.7e-05  Score=65.13  Aligned_cols=252  Identities=11%  Similarity=0.070  Sum_probs=134.0

Q ss_pred             CCCCCCCccEEEcCCCc-EEEEecCCeEEEEe--CCceE-EEEecCCCcccCeEEcCCCCEEEEeCCCc-EEEEc-CCC-
Q 017371           75 EGSVNHPEDASMDKNGV-IYTATRDGWIKRLQ--DGTWV-NWKFIDSQTLVGLTSTKEGHLIICDNANG-LHKVS-EDG-  147 (372)
Q Consensus        75 ~g~~~~p~~i~~d~~G~-l~v~~~~g~i~~~~--~g~~~-~~~~~~~~p~~gl~~d~dG~l~v~~~~~g-v~~~~-~~g-  147 (372)
                      .|.-....++++.++|. |..|+.||.|..|+  +++.. .+........ .+++.++|++.++....+ +..++ ... 
T Consensus        52 ~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~-~v~~~~~~~~l~~~~~d~~i~~~~~~~~~  130 (340)
T d1tbga_          52 RGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVM-TCAYAPSGNYVACGGLDNICSIYNLKTRE  130 (340)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEE-EEEECTTSSEEEEEETTCCEEEEESSSSC
T ss_pred             CCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEE-eeEeeccceeeeeecccceeecccccccc
Confidence            45555678899999886 55566899999999  55443 3332233345 899999998666544433 44444 221 


Q ss_pred             -cEEEeeecCCcc-------c-ccccceEEccCCcEEEEeCCCCCC----------Cc-----ccccccccccCCCeEEE
Q 017371          148 -VENFLSYVNGSK-------L-RFANDVVEASDGSLYFTVSSSKYL----------PH-----EYCLDILEGKPHGQLLK  203 (372)
Q Consensus       148 -~~~l~~~~~~~~-------~-~~~~~l~~d~dG~i~vtd~~~~~~----------~~-----~~~~~~~~~~~~g~v~~  203 (372)
                       .........+..       . ....-.....++............          ..     .....+..+..++.|..
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i  210 (340)
T d1tbga_         131 GNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKL  210 (340)
T ss_dssp             SCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEE
T ss_pred             cccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEE
Confidence             111100101000       0 000001111112111111110000          00     00011233455678888


Q ss_pred             EeCCCCeEEEEeCCc-cCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeecc-CCCCCCceeEEcCCCCEEEE
Q 017371          204 YDPSSNITTLVADGF-YFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAE-NLPGAPDNINLAPDGTFWIA  281 (372)
Q Consensus       204 ~d~~t~~~~~~~~~~-~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~-~~~g~p~~i~~d~~G~lwva  281 (372)
                      +|..+++......+. ...+.++++|+++.++.+. .++.|..+++....  ....+.. ........++++++|++.++
T Consensus       211 ~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s-~d~~i~~~~~~~~~--~~~~~~~~~~~~~i~~~~~s~~~~~l~~  287 (340)
T d1tbga_         211 WDVREGMCRQTFTGHESDINAICFFPNGNAFATGS-DDATCRLFDLRADQ--ELMTYSHDNIICGITSVSFSKSGRLLLA  287 (340)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTTE--EEEEECCTTCCSCEEEEEECSSSCEEEE
T ss_pred             EECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEe-CCCeEEEEeecccc--cccccccccccCceEEEEECCCCCEEEE
Confidence            998877765544442 2346789999999666554 45668878775431  1222211 11222456888999987776


Q ss_pred             EecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEEC-CCCcEEEEEECCCCCeeccceeeEEE-CC-EEEE
Q 017371          282 IIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQV-DN-HLYV  358 (372)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~-~g-~L~i  358 (372)
                      ...                                  .+.|..+| .+++.+..+....+    .++++... ++ .|..
T Consensus       288 g~~----------------------------------dg~i~iwd~~~~~~~~~~~~H~~----~V~~l~~s~d~~~l~s  329 (340)
T d1tbga_         288 GYD----------------------------------DFNCNVWDALKADRAGVLAGHDN----RVSCLGVTDDGMAVAT  329 (340)
T ss_dssp             EET----------------------------------TSCEEEEETTTCCEEEEECCCSS----CEEEEEECTTSSCEEE
T ss_pred             EEC----------------------------------CCEEEEEECCCCcEEEEEcCCCC----CEEEEEEeCCCCEEEE
Confidence            655                                  45677777 46888888764333    47777775 33 5655


Q ss_pred             EeCCCCeEEEE
Q 017371          359 ISLTSNFIGKV  369 (372)
Q Consensus       359 gs~~~~~i~~~  369 (372)
                      |+.. ..|.++
T Consensus       330 ~s~D-g~v~iW  339 (340)
T d1tbga_         330 GSWD-SFLKIW  339 (340)
T ss_dssp             EETT-SCEEEE
T ss_pred             EccC-CEEEEe
Confidence            6644 445544

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.50  E-value=2.2e-05  Score=70.00  Aligned_cols=150  Identities=7%  Similarity=-0.108  Sum_probs=88.8

Q ss_pred             ccEEEcCCC-cEEEEe-----cCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCC-EEEEeCCC----------cEEE
Q 017371           82 EDASMDKNG-VIYTAT-----RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNAN----------GLHK  142 (372)
Q Consensus        82 ~~i~~d~~G-~l~v~~-----~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~-l~v~~~~~----------gv~~  142 (372)
                      .++++.++| ++|+.+     ..++|+.+|  .++..... ..+... ++++.|||+ ||++....          .+..
T Consensus        24 ~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~-~~~~~~-~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v  101 (373)
T d2madh_          24 NDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHV-NGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEV  101 (373)
T ss_pred             cccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEE-eCCCCc-cEEEcCCCCEEEEEeecCCcccccccceEEEE
Confidence            344556666 567764     235688888  55544322 234555 899999995 66664321          2556


Q ss_pred             Ec-CCC--cEEEeeecC--CcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeC
Q 017371          143 VS-EDG--VENFLSYVN--GSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD  216 (372)
Q Consensus       143 ~~-~~g--~~~l~~~~~--~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~  216 (372)
                      +| .++  ...+.....  ......+..+++.++|+ +|+....                ..+.+..++..+.+...   
T Consensus       102 ~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~----------------~~~~~~~~~~~~~~~~~---  162 (373)
T d2madh_         102 FDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFA----------------AGPAVGLVVQGGSSDDQ---  162 (373)
T ss_pred             EECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEc----------------CCCceEEeeccCCeEEE---
Confidence            66 444  222211100  01122456788888874 4554321                34455666665554432   


Q ss_pred             CccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCC
Q 017371          217 GFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGER  252 (372)
Q Consensus       217 ~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~  252 (372)
                      ....+.+++++++++.+|++....+.+..++..+.+
T Consensus       163 ~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~  198 (373)
T d2madh_         163 LLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGA  198 (373)
T ss_pred             EeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCce
Confidence            234577899999999999999888889888876543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.48  E-value=1.3e-05  Score=73.91  Aligned_cols=201  Identities=13%  Similarity=0.081  Sum_probs=118.8

Q ss_pred             CCCCCCccEEEc--CCC-cEEEEe-cCCeEEEEe--CCceEEEEe--cCCCcccCeEEcCCCC-EEEEeCC-CcE-----
Q 017371           76 GSVNHPEDASMD--KNG-VIYTAT-RDGWIKRLQ--DGTWVNWKF--IDSQTLVGLTSTKEGH-LIICDNA-NGL-----  140 (372)
Q Consensus        76 g~~~~p~~i~~d--~~G-~l~v~~-~~g~i~~~~--~g~~~~~~~--~~~~p~~gl~~d~dG~-l~v~~~~-~gv-----  140 (372)
                      |....|+....+  +|| +||+.+ .+++|.++|  +++...+..  .+..|. |+++.++|+ +||+... ..+     
T Consensus        67 gd~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gph-gi~~spdg~t~YV~~~~~~~v~~~~d  145 (441)
T d1qnia2          67 GDCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIH-GLRLQKVPKTNYVFCNAEFVIPQPND  145 (441)
T ss_dssp             CCBCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEE-EEEECCSSBCCEEEEEECSCEESSCS
T ss_pred             CcccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCcc-ceEEeccCCEEEEEeccCCcccccCc
Confidence            445567766654  577 699998 789999999  666655443  356788 999999995 6776432 222     


Q ss_pred             -------------EEEc-CCC--cEEEeeecCCcccccccceEEccCCc-EEEEeCCCCCCC---------ccccc----
Q 017371          141 -------------HKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLP---------HEYCL----  190 (372)
Q Consensus       141 -------------~~~~-~~g--~~~l~~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~---------~~~~~----  190 (372)
                                   ..+| .+.  ...+  ...    ..+.++++++||+ +|++...++-..         .++..    
T Consensus       146 g~~~~~~~~~~~~~~iD~~t~~v~~qI--~v~----~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~  219 (441)
T d1qnia2         146 GTDFSLDNSYTMFTAIDAETMDVAWQV--IVD----GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNV  219 (441)
T ss_dssp             SSCCCGGGEEEEEEEEETTTCSEEEEE--EES----SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEH
T ss_pred             ccccccccccceEEeecCccceeeEEE--ecC----CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCc
Confidence                         2244 222  1111  111    2577899999995 777754322110         00000    


Q ss_pred             ----------ccccccCCCeEEEEeC-CCCeEEEEeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCC------CC
Q 017371          191 ----------DILEGKPHGQLLKYDP-SSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGE------RK  253 (372)
Q Consensus       191 ----------~~~~~~~~g~v~~~d~-~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~------~~  253 (372)
                                ....... ..+..++. .+.++......-..|.|++++|||+++|+++.....|..++++.-      ++
T Consensus       220 p~~~~~~~dGk~~~v~~-~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~  298 (441)
T d1qnia2         220 ERIAAAVKAGNFKTIGD-SKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKI  298 (441)
T ss_dssp             HHHHHHHHTTCCBCCTT-CCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSS
T ss_pred             cceEEEecCCCEEEeCC-CCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccC
Confidence                      0111111 23444553 323333344455779999999999999999999999999997521      11


Q ss_pred             ccee-eeccCCCC-CCceeEEcCCCCEEEEEec
Q 017371          254 GKLE-TFAENLPG-APDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       254 ~~~~-~~~~~~~g-~p~~i~~d~~G~lwva~~~  284 (372)
                      .... ...+...| .|-...+|++|+.|.+...
T Consensus       299 ~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~  331 (441)
T d1qnia2         299 ELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFI  331 (441)
T ss_dssp             CGGGGEEECCBCCSCEEEEEECSSSEEEEEETT
T ss_pred             CcceEEEeecccccCcccceecCCceEEEcccc
Confidence            1111 11111111 3555689999999998753

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.46  E-value=8.4e-05  Score=64.46  Aligned_cols=213  Identities=15%  Similarity=0.125  Sum_probs=122.1

Q ss_pred             CCCccEEEcCCCc-EEEEe-cCCeEEEEe--CCceEEEEec------CCCcccCeEEcCCCC-EEEEeCC----------
Q 017371           79 NHPEDASMDKNGV-IYTAT-RDGWIKRLQ--DGTWVNWKFI------DSQTLVGLTSTKEGH-LIICDNA----------  137 (372)
Q Consensus        79 ~~p~~i~~d~~G~-l~v~~-~~g~i~~~~--~g~~~~~~~~------~~~p~~gl~~d~dG~-l~v~~~~----------  137 (372)
                      ..|.++++++||+ +|++. .+|.|..||  +++.......      ...+. ++++.+||+ +|++...          
T Consensus        34 ~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~-~v~~s~dg~~l~~~~~~~~~~~~~~~~  112 (337)
T d1pbyb_          34 PTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLF-GAALSPDGKTLAIYESPVRLELTHFEV  112 (337)
T ss_dssp             TCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTT-CEEECTTSSEEEEEEEEEEECSSCEEE
T ss_pred             CCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCccccccee-eEEEcCCCcEEEEeecCCcceeeeccc
Confidence            4799999999995 67765 689999999  6654432221      12456 899999996 5555421          


Q ss_pred             --CcEEEEc-CCC--cEEEeeecCCcccccccceEEccCCc-EEEEeCCCC-CCC-----------cccc---------c
Q 017371          138 --NGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSK-YLP-----------HEYC---------L  190 (372)
Q Consensus       138 --~gv~~~~-~~g--~~~l~~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~-~~~-----------~~~~---------~  190 (372)
                        ..+..++ ..+  ...+.    .  ...+.++++++||+ +|+++.... +..           ....         .
T Consensus       113 ~~~~~~~~d~~~~~~~~~~~----~--~~~~~~~~~s~dg~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (337)
T d1pbyb_         113 QPTRVALYDAETLSRRKAFE----A--PRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVL  186 (337)
T ss_dssp             CCCEEEEEETTTTEEEEEEE----C--CSSCCCEEECTTSSCEEEESSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCC
T ss_pred             cccceeeccccCCeEEEecc----c--cCCceEEEEcCCCCEEEEEcCCcceeeeecCcEEEEeecCCccccceecCCcc
Confidence              1233344 333  11111    1  13567899999995 555432100 000           0000         0


Q ss_pred             c------------------------cccccCCCeEEEEeCCCCeEEEE--eCCccCcceEEEecCCCEEEEEeCCCCeEE
Q 017371          191 D------------------------ILEGKPHGQLLKYDPSSNITTLV--ADGFYFANGVALSRDEDYVVVCESWKFRCR  244 (372)
Q Consensus       191 ~------------------------~~~~~~~g~v~~~d~~t~~~~~~--~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~  244 (372)
                      .                        .......+.+..+|..+++....  ......+...++++++..++..+   +.|.
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~  263 (337)
T d1pbyb_         187 AVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAY---NVLE  263 (337)
T ss_dssp             CCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEEE---SEEE
T ss_pred             eeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEcc---ccEE
Confidence            0                        00011123456666655554432  11223344567889998888775   4688


Q ss_pred             EEEccCCCCcceeeeccCCCCCCceeEEcCCCC-EEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEE
Q 017371          245 KYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLI  323 (372)
Q Consensus       245 ~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~  323 (372)
                      .+++...+..  ...  ..+..|.++++++||+ +|++...                                   +.|.
T Consensus       264 v~d~~~~~~~--~~~--~~~~~~~~~~~s~dG~~l~v~~~~-----------------------------------~~i~  304 (337)
T d1pbyb_         264 SFDLEKNASI--KRV--PLPHSYYSVNVSTDGSTVWLGGAL-----------------------------------GDLA  304 (337)
T ss_dssp             EEETTTTEEE--EEE--ECSSCCCEEEECTTSCEEEEESBS-----------------------------------SEEE
T ss_pred             EEECCCCcEE--EEE--cCCCCEEEEEECCCCCEEEEEeCC-----------------------------------CcEE
Confidence            8887653221  111  2344588999999996 6776543                                   5688


Q ss_pred             EECC-CCcEEEEEECCCC
Q 017371          324 HVAE-DGTIIRNLVDPTG  340 (372)
Q Consensus       324 ~~~~-~g~~~~~~~~~~g  340 (372)
                      .+|. .++.+..+..+.+
T Consensus       305 v~D~~t~~~v~~i~~~g~  322 (337)
T d1pbyb_         305 AYDAETLEKKGQVDLPGN  322 (337)
T ss_dssp             EEETTTCCEEEEEECGGG
T ss_pred             EEECCCCcEEEEEECCCC
Confidence            8884 4888888877643

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.44  E-value=3.7e-05  Score=67.80  Aligned_cols=179  Identities=8%  Similarity=-0.097  Sum_probs=100.4

Q ss_pred             cCCC-cEEEEe-----cCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCC-EEEEeCC----------CcEEEEc-CC
Q 017371           87 DKNG-VIYTAT-----RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA----------NGLHKVS-ED  146 (372)
Q Consensus        87 d~~G-~l~v~~-----~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~-l~v~~~~----------~gv~~~~-~~  146 (372)
                      .+|| ++|+++     ..+.|+.+|  .|+...... .+... +++++|||+ ||+++..          ..|..+| .+
T Consensus        10 spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~-~g~~~-~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t   87 (355)
T d2bbkh_          10 APDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMID-GGFLP-NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT   87 (355)
T ss_dssp             CCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEE-ECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred             CCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEE-CCCCC-ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCC
Confidence            3566 678876     234689998  565433222 34455 799999996 7877531          2377788 56


Q ss_pred             C--cEEEeeec--CCcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCC----
Q 017371          147 G--VENFLSYV--NGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG----  217 (372)
Q Consensus       147 g--~~~l~~~~--~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~----  217 (372)
                      +  ...+....  ...-...+..+++.++|+ +++.+.+                ....+..++..+++.......    
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~  151 (355)
T d2bbkh_          88 LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS----------------PAPAVGVVDLEGKAFKRMLDVPDCY  151 (355)
T ss_dssp             CCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS----------------SSCEEEEEETTTTEEEEEEECCSEE
T ss_pred             CCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCC----------------CCceeeeeecCCCcEeeEEecCCcc
Confidence            6  33222111  111123567899999985 6665432                344566677766654332211    


Q ss_pred             ----ccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCC--CCCCcee-EEcCCCCEEEEEec
Q 017371          218 ----FYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENL--PGAPDNI-NLAPDGTFWIAIIK  284 (372)
Q Consensus       218 ----~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~--~g~p~~i-~~d~~G~lwva~~~  284 (372)
                          ......+++++|++.+++.......+..++........... ....  ...+..+ ....+|++|+....
T Consensus       152 ~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~  224 (355)
T d2bbkh_         152 HIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFL-INHPAYSQKAGRLVWPTYTGKIHQIDLS  224 (355)
T ss_dssp             EEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCB-CSCCEEETTTTEEEEEBTTSEEEEEECT
T ss_pred             eEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecce-eeeccccCCCCeEEEecCCCeEEEEecC
Confidence                11233578899999999888777777766654332211111 1000  0112223 34567788888754

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.40  E-value=0.00021  Score=63.86  Aligned_cols=185  Identities=10%  Similarity=0.041  Sum_probs=102.3

Q ss_pred             ccEEEcCCCcEE-EEecCCeEEEEe--CCceEEEEe--cCCCcccCeEEcCCCCEEEEeCC-CcEEEEc-CCC-cEEEee
Q 017371           82 EDASMDKNGVIY-TATRDGWIKRLQ--DGTWVNWKF--IDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG-VENFLS  153 (372)
Q Consensus        82 ~~i~~d~~G~l~-v~~~~g~i~~~~--~g~~~~~~~--~~~~p~~gl~~d~dG~l~v~~~~-~gv~~~~-~~g-~~~l~~  153 (372)
                      .+++++++|.+. ++..+|.|..|+  +++.+....  ....+...+++.|+|++.++... .-+..++ .++ .+....
T Consensus        11 t~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~   90 (371)
T d1k8kc_          11 SCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLV   90 (371)
T ss_dssp             CEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEE
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccccc
Confidence            689999999665 455788888888  565444332  12233339999999987665433 4477777 444 332211


Q ss_pred             ecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEE--eCCcc-CcceEEEecCC
Q 017371          154 YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV--ADGFY-FANGVALSRDE  230 (372)
Q Consensus       154 ~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~--~~~~~-~~~gi~~~~dg  230 (372)
                      . .+ ....+..++++++|+..++-+.               ...-+++.++.........  ..... ....++++|++
T Consensus        91 ~-~~-~~~~v~~i~~~p~~~~l~~~s~---------------d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~  153 (371)
T d1k8kc_          91 I-LR-INRAARCVRWAPNEKKFAVGSG---------------SRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS  153 (371)
T ss_dssp             C-CC-CSSCEEEEEECTTSSEEEEEET---------------TSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTS
T ss_pred             c-cc-ccccccccccccccccceeecc---------------cCcceeeeeecccccccccccccccccccccccccccc
Confidence            1 11 1134668899999986664321               1223556666543332221  12221 23468899999


Q ss_pred             CEEEEEeCCCCeEEEEEccCCCCcce-------------eeec--cCCCCCCceeEEcCCCCEEEEEec
Q 017371          231 DYVVVCESWKFRCRKYWLKGERKGKL-------------ETFA--ENLPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       231 ~~l~v~~~~~~~i~~~~~~g~~~~~~-------------~~~~--~~~~g~p~~i~~d~~G~lwva~~~  284 (372)
                      +.+..+ +.+..|..++.........             +...  ....+....++++++|++.++...
T Consensus       154 ~~l~s~-s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~  221 (371)
T d1k8kc_         154 VLLAAG-SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH  221 (371)
T ss_dssp             SEEEEE-ETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEET
T ss_pred             cceecc-ccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccccccccccc
Confidence            866544 4456677776643221110             0011  112223456788999986655443

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.36  E-value=0.00015  Score=63.53  Aligned_cols=239  Identities=10%  Similarity=0.019  Sum_probs=122.7

Q ss_pred             CCccEEEcCCCcEEE-EecCCe-EEEEe--CCc---eEEEEecCCCcccCeEEcC--CCCEEEEeCCCc-EEEEc-CCC-
Q 017371           80 HPEDASMDKNGVIYT-ATRDGW-IKRLQ--DGT---WVNWKFIDSQTLVGLTSTK--EGHLIICDNANG-LHKVS-EDG-  147 (372)
Q Consensus        80 ~p~~i~~d~~G~l~v-~~~~g~-i~~~~--~g~---~~~~~~~~~~p~~gl~~d~--dG~l~v~~~~~g-v~~~~-~~g-  147 (372)
                      .|.+++++++|...+ ++.+.. |..++  ..+   ...+......+...+++.|  +|+++++....| |..++ ..+ 
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~   98 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK   98 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEG
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCc
Confidence            467889998885544 443333 33344  222   2222211123333888976  556655443334 55555 322 


Q ss_pred             -cEEEe----eecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCc-cCc
Q 017371          148 -VENFL----SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF-YFA  221 (372)
Q Consensus       148 -~~~l~----~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~-~~~  221 (372)
                       ...+.    ..... ....+..+++.++|+..++-..               ...+.+..++.++++......+. ..-
T Consensus        99 ~~~~~~~~~~~~~~~-~~~~v~~v~~s~~~~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~h~~~v  162 (325)
T d1pgua1          99 ESNSVEVNVKSEFQV-LAGPISDISWDFEGRRLCVVGE---------------GRDNFGVFISWDSGNSLGEVSGHSQRI  162 (325)
T ss_dssp             GGTEEEEEEEEEEEC-CSSCEEEEEECTTSSEEEEEEC---------------CSSCSEEEEETTTCCEEEECCSCSSCE
T ss_pred             ceeeeeccccccccc-ccCcEEEEEECCCCCccceeec---------------cccceEEEEeecccccceeeeeccccc
Confidence             11111    11111 1124567889999976654221               12334555666656544433332 233


Q ss_pred             ceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeecc--CCCCCCceeEEcCCC-CEEEEEecCchhHHHHhhcchh
Q 017371          222 NGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAE--NLPGAPDNINLAPDG-TFWIAIIKLDARRMKILNSSKL  298 (372)
Q Consensus       222 ~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~--~~~g~p~~i~~d~~G-~lwva~~~~~~~~~~~~~~~~~  298 (372)
                      +.+++++++..++++...++.+..++....+.  ......  ...+....+++.+++ .+.++...              
T Consensus       163 ~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~--~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~--------------  226 (325)
T d1pgua1         163 NACHLKQSRPMRSMTVGDDGSVVFYQGPPFKF--SASDRTHHKQGSFVRDVEFSPDSGEFVITVGS--------------  226 (325)
T ss_dssp             EEEEECSSSSCEEEEEETTTEEEEEETTTBEE--EEEECSSSCTTCCEEEEEECSTTCCEEEEEET--------------
T ss_pred             ccccccccccceEEEeeccccccccccccccc--ceecccccCCCCccEEeeeccccceecccccc--------------
Confidence            56889999887777665666777777643211  111111  122335668888875 55555444              


Q ss_pred             HHHHHHhcCccccccccCCCceEEEEEC-CCCcEEEEEECCCCCeeccceeeEEECC-EEEEEeCCCCeEEEEeC
Q 017371          299 IKHVLAAYPKLFSQFITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQVDN-HLYVISLTSNFIGKVQL  371 (372)
Q Consensus       299 ~r~~~~~~p~~~~~~~~~~~~~~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~~g-~L~igs~~~~~i~~~~~  371 (372)
                                          .+.|..+| .+++.+..+..........+.++...++ .|..++ ....|.++++
T Consensus       227 --------------------d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s-~D~~i~iwd~  280 (325)
T d1pgua1         227 --------------------DRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVG-ADATIRVWDV  280 (325)
T ss_dssp             --------------------TCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEE-TTSEEEEEET
T ss_pred             --------------------ccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEe-CCCeEEEEEC
Confidence                                35566676 4577777776543332223333333344 444444 4456666664

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.32  E-value=0.00048  Score=61.04  Aligned_cols=230  Identities=11%  Similarity=0.065  Sum_probs=124.9

Q ss_pred             CccEEEcCCCc-EEEEecCCeEEEEe--CCceEEEEec-CCCcccCeEEcCCCCEEEEeCC-CcEEEEc-CCCcEEEeee
Q 017371           81 PEDASMDKNGV-IYTATRDGWIKRLQ--DGTWVNWKFI-DSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDGVENFLSY  154 (372)
Q Consensus        81 p~~i~~d~~G~-l~v~~~~g~i~~~~--~g~~~~~~~~-~~~p~~gl~~d~dG~l~v~~~~-~gv~~~~-~~g~~~l~~~  154 (372)
                      -.++++.++|. |.++..+|.|..++  .++....... ..... .+.+.+++...+.... ..+..++ ..........
T Consensus       124 V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~  202 (388)
T d1erja_         124 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIY-SLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS  202 (388)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE-EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             EEEEEECCCCCcceeccccccccccccccccccccccccccccc-ccccccccccccccccceeeeeeeccccccccccc
Confidence            34688888885 55566899999888  4443333222 23344 7888888865554434 4466666 4442211111


Q ss_pred             cCCcccccccceEEc-cCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCC--------ccCcceEE
Q 017371          155 VNGSKLRFANDVVEA-SDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG--------FYFANGVA  225 (372)
Q Consensus       155 ~~~~~~~~~~~l~~d-~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~--------~~~~~gi~  225 (372)
                      ...    ....+.+. .+|++.++-                 ..++.|..+|..+++.......        ......++
T Consensus       203 ~~~----~~~~~~~~~~~~~~l~~~-----------------~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~  261 (388)
T d1erja_         203 IED----GVTTVAVSPGDGKYIAAG-----------------SLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVV  261 (388)
T ss_dssp             CSS----CEEEEEECSTTCCEEEEE-----------------ETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEE
T ss_pred             ccc----ccccccccCCCCCeEEEE-----------------cCCCeEEEeecccCccceeeccccccccCCCCCEEEEE
Confidence            111    11223333 456655542                 2456677788766654332211        11234688


Q ss_pred             EecCCCEEEEEeCCCCeEEEEEccCCCCcc---------eeeeccCCCCCCceeEEcCCCCEEEEEecCchhHHHHhhcc
Q 017371          226 LSRDEDYVVVCESWKFRCRKYWLKGERKGK---------LETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSS  296 (372)
Q Consensus       226 ~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~---------~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~~~~~~~~  296 (372)
                      ++++++.++.+. .++.|..+++.......         ..............+++.++|++.++...            
T Consensus       262 ~s~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~------------  328 (388)
T d1erja_         262 FTRDGQSVVSGS-LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK------------  328 (388)
T ss_dssp             ECTTSSEEEEEE-TTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEET------------
T ss_pred             ECCCCCEEEEEE-CCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeC------------
Confidence            999999666554 45678888775431110         00001111223456788888886665554            


Q ss_pred             hhHHHHHHhcCccccccccCCCceEEEEEC-CCCcEEEEEECCCCCeeccceeeEEE-------CCEEEEEeCCCCeEEE
Q 017371          297 KLIKHVLAAYPKLFSQFITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQV-------DNHLYVISLTSNFIGK  368 (372)
Q Consensus       297 ~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~-------~g~L~igs~~~~~i~~  368 (372)
                                            .+.|..+| .+|+.+..+....+.    ++++...       ++.+.+..-....|.+
T Consensus       329 ----------------------dg~i~vwd~~~~~~~~~l~~H~~~----V~~~~~~~~~~~spd~~~l~s~s~Dg~I~i  382 (388)
T d1erja_         329 ----------------------DRGVLFWDKKSGNPLLMLQGHRNS----VISVAVANGSSLGPEYNVFATGSGDCKARI  382 (388)
T ss_dssp             ----------------------TSEEEEEETTTCCEEEEEECCSSC----EEEEEECSSCTTCTTCEEEEEEETTSEEEE
T ss_pred             ----------------------CCEEEEEECCCCcEEEEEeCCCCC----EEEEEEecCcccCCCCCEEEEEeCCCEEEE
Confidence                                  46777777 568888888765443    4444432       3455554445567777


Q ss_pred             EeC
Q 017371          369 VQL  371 (372)
Q Consensus       369 ~~~  371 (372)
                      +++
T Consensus       383 W~~  385 (388)
T d1erja_         383 WKY  385 (388)
T ss_dssp             EEE
T ss_pred             Eee
Confidence            664

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.28  E-value=0.00081  Score=61.13  Aligned_cols=162  Identities=11%  Similarity=0.040  Sum_probs=95.8

Q ss_pred             ceEecCCCCCCCccEEEcCCC-cEEEEecCCeEEEEe--CCceEEE--EecCCCcccCeEE----cCCCC-EEEEeCC-C
Q 017371           70 FIKVGEGSVNHPEDASMDKNG-VIYTATRDGWIKRLQ--DGTWVNW--KFIDSQTLVGLTS----TKEGH-LIICDNA-N  138 (372)
Q Consensus        70 ~~~~~~g~~~~p~~i~~d~~G-~l~v~~~~g~i~~~~--~g~~~~~--~~~~~~p~~gl~~----d~dG~-l~v~~~~-~  138 (372)
                      +.++..|  ..|+++++.||| .+|+++.+|.|..|+  .++....  ...+..+. ++++    .|||+ |+++... .
T Consensus        55 ~~~l~~g--~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~-~~~~s~~~spDG~~l~v~~~~~~  131 (426)
T d1hzua2          55 VKVIDTG--YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEAR-SVESSKFKGYEDRYTIAGAYWPP  131 (426)
T ss_dssp             EEEEECC--SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEE-EEEECCSTTCTTTEEEEEEEESS
T ss_pred             EEEEeCC--CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCc-ceEEeeeecCCCCEEEEeecCCC
Confidence            3445555  479999999999 477888899999999  4543222  12233444 5544    46886 5676544 4


Q ss_pred             cEEEEc-CCC--cEEEeee---cCCc---ccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCC
Q 017371          139 GLHKVS-EDG--VENFLSY---VNGS---KLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS  208 (372)
Q Consensus       139 gv~~~~-~~g--~~~l~~~---~~~~---~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t  208 (372)
                      .+..++ ..+  ...+...   ....   .......++..+++. +|++..                 ..+.+..++..+
T Consensus       132 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~-----------------~~~~i~~~~~~~  194 (426)
T d1hzua2         132 QFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK-----------------ETGKVLLVNYKD  194 (426)
T ss_dssp             EEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET-----------------TTTEEEEEECSS
T ss_pred             eEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecC-----------------CCCeEEEEEecc
Confidence            566667 555  2222211   0000   001122355556664 333322                 455666665443


Q ss_pred             CeE--EEEeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCC
Q 017371          209 NIT--TLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGE  251 (372)
Q Consensus       209 ~~~--~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~  251 (372)
                      ...  .........+.++++++++++++++....+.+..++....
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~  239 (426)
T d1hzua2         195 IDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDR  239 (426)
T ss_dssp             SSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTT
T ss_pred             ccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccc
Confidence            321  1122344567899999999999999988888988887654

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.23  E-value=0.001  Score=58.07  Aligned_cols=230  Identities=12%  Similarity=0.069  Sum_probs=125.7

Q ss_pred             CccEEEcC--CCcEE-EEecCCeEEEEe--CCc----eE-----EEEecCCCcccCeEEcCCCCEEEE-eCC--CcEEEE
Q 017371           81 PEDASMDK--NGVIY-TATRDGWIKRLQ--DGT----WV-----NWKFIDSQTLVGLTSTKEGHLIIC-DNA--NGLHKV  143 (372)
Q Consensus        81 p~~i~~d~--~G~l~-v~~~~g~i~~~~--~g~----~~-----~~~~~~~~p~~gl~~d~dG~l~v~-~~~--~gv~~~  143 (372)
                      ..++++.|  +|.+. .|+.+|.|..|+  .++    ..     .+....+... .+++.++|+.+++ ..+  .-+..+
T Consensus        66 v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~-~v~~s~~~~~l~~~~~~~~~~~~~~  144 (325)
T d1pgua1          66 VTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPIS-DISWDFEGRRLCVVGEGRDNFGVFI  144 (325)
T ss_dssp             EEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEE-EEEECTTSSEEEEEECCSSCSEEEE
T ss_pred             EEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEE-EEEECCCCCccceeeccccceEEEE
Confidence            45677765  55444 566899998887  221    11     1111223334 8999999975544 222  224455


Q ss_pred             c-CCC--cEEEeeecCCcccccccceEEccCCcE-EEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCc-
Q 017371          144 S-EDG--VENFLSYVNGSKLRFANDVVEASDGSL-YFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF-  218 (372)
Q Consensus       144 ~-~~g--~~~l~~~~~~~~~~~~~~l~~d~dG~i-~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~-  218 (372)
                      + ..+  ...+    .+. ...+..+++.+++.. .++-                 ..++.+..+|..+.+........ 
T Consensus       145 ~~~~~~~~~~~----~~h-~~~v~~~~~~~~~~~~~~~~-----------------~~d~~v~~~d~~~~~~~~~~~~~~  202 (325)
T d1pgua1         145 SWDSGNSLGEV----SGH-SQRINACHLKQSRPMRSMTV-----------------GDDGSVVFYQGPPFKFSASDRTHH  202 (325)
T ss_dssp             ETTTCCEEEEC----CSC-SSCEEEEEECSSSSCEEEEE-----------------ETTTEEEEEETTTBEEEEEECSSS
T ss_pred             eecccccceee----eec-ccccccccccccccceEEEe-----------------ecccccccccccccccceeccccc
Confidence            5 444  3322    111 134567888888753 3431                 24677888887666554433222 


Q ss_pred             ---cCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEc---CCCCEEEEEecCchhHHHH
Q 017371          219 ---YFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLA---PDGTFWIAIIKLDARRMKI  292 (372)
Q Consensus       219 ---~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d---~~G~lwva~~~~~~~~~~~  292 (372)
                         .....++|+||+..++++...++.|..|+....+  ....+. .......++.+.   ++|.+.++...        
T Consensus       203 ~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~--~~~~l~-~~~~~v~~~~~s~~~~dg~~l~s~s~--------  271 (325)
T d1pgua1         203 KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE--FLKYIE-DDQEPVQGGIFALSWLDSQKFATVGA--------  271 (325)
T ss_dssp             CTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC--EEEECC-BTTBCCCSCEEEEEESSSSEEEEEET--------
T ss_pred             CCCCccEEeeeccccceeccccccccceeeeeecccc--cccccc-ccccccccceeeeeccCCCEEEEEeC--------
Confidence               1235688999865577766667778888875432  112222 111112333333   67877766654        


Q ss_pred             hhcchhHHHHHHhcCccccccccCCCceEEEEEC-CCCcEEEEEECCCCCeeccceeeEEE-CCEEEEEeCCCCeEEEEe
Q 017371          293 LNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQ  370 (372)
Q Consensus       293 ~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~L~igs~~~~~i~~~~  370 (372)
                                                .+.|..+| .+++.+..+............++... ++.|.-++. ...|.+++
T Consensus       272 --------------------------D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~-dg~i~vwd  324 (325)
T d1pgua1         272 --------------------------DATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSL-DGTLNFYE  324 (325)
T ss_dssp             --------------------------TSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEET-TSCEEEEE
T ss_pred             --------------------------CCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEEC-CCEEEEEE
Confidence                                      35666667 45788887765432211122233333 466655554 47888877


Q ss_pred             C
Q 017371          371 L  371 (372)
Q Consensus       371 ~  371 (372)
                      |
T Consensus       325 l  325 (325)
T d1pgua1         325 L  325 (325)
T ss_dssp             T
T ss_pred             C
Confidence            5

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.19  E-value=5.2e-05  Score=66.63  Aligned_cols=167  Identities=10%  Similarity=0.065  Sum_probs=101.7

Q ss_pred             EcC-CCcEEEEecCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCCE-EEEeCCCc--EEEEc-CCC-cEEEeeecCC
Q 017371           86 MDK-NGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHL-IICDNANG--LHKVS-EDG-VENFLSYVNG  157 (372)
Q Consensus        86 ~d~-~G~l~v~~~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~l-~v~~~~~g--v~~~~-~~g-~~~l~~~~~~  157 (372)
                      +.| ||+++.....|.|+.++  ++....+. ..+... .+++.|||+. +++....|  ++.++ .+| .+.+...   
T Consensus        10 fSP~dG~~~a~~~~g~v~v~d~~~~~~~~~~-~~~~v~-~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~---   84 (360)
T d1k32a3          10 FSPLDGDLIAFVSRGQAFIQDVSGTYVLKVP-EPLRIR-YVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEEN---   84 (360)
T ss_dssp             EEECGGGCEEEEETTEEEEECTTSSBEEECS-CCSCEE-EEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCC---
T ss_pred             ccCCCCCEEEEEECCeEEEEECCCCcEEEcc-CCCCEE-EEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeCC---
Confidence            445 78777777788899998  55555543 234566 9999999964 44433333  66677 555 4433211   


Q ss_pred             cccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCC-ccCcceEEEecCCCEEEEE
Q 017371          158 SKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSRDEDYVVVC  236 (372)
Q Consensus       158 ~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~-~~~~~gi~~~~dg~~l~v~  236 (372)
                        ...+..+++.+||+..++-.                 ..+.++.++.++++....... ......++++|||+++.++
T Consensus        85 --~~~v~~~~~spdg~~l~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~  145 (360)
T d1k32a3          85 --LGNVFAMGVDRNGKFAVVAN-----------------DRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYG  145 (360)
T ss_dssp             --CCSEEEEEECTTSSEEEEEE-----------------TTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEE
T ss_pred             --CceEEeeeecccccccceec-----------------cccccccccccccceeeeeecccccccchhhccceeeeeee
Confidence              13456899999998666432                 467789999887776655433 3345679999999988765


Q ss_pred             eC---------CCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEE
Q 017371          237 ES---------WKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWI  280 (372)
Q Consensus       237 ~~---------~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv  280 (372)
                      ..         ....+..+++.+.   +..... ........+++.++|+..+
T Consensus       146 ~~~~~~~~~~~~~~~~~v~d~~~~---~~~~~~-~~~~~~~~~~~spdg~~l~  194 (360)
T d1k32a3         146 FPLKHGETDGYVMQAIHVYDMEGR---KIFAAT-TENSHDYAPAFDADSKNLY  194 (360)
T ss_dssp             EEECSSTTCSCCEEEEEEEETTTT---EEEECS-CSSSBEEEEEECTTSCEEE
T ss_pred             ccccccceeeccccceeeeccccC---ceeeec-ccccccccccccCCCCEEE
Confidence            42         1123555666442   111111 1222234466777876433

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.18  E-value=9.2e-05  Score=66.18  Aligned_cols=194  Identities=11%  Similarity=-0.052  Sum_probs=107.4

Q ss_pred             CCCccEEEcCCC-cEEEEe-cCCeEEEEe--CCceEEEEecCCCc--------ccCeEEcCCCCEEEEeCCCcEEEEcCC
Q 017371           79 NHPEDASMDKNG-VIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQT--------LVGLTSTKEGHLIICDNANGLHKVSED  146 (372)
Q Consensus        79 ~~p~~i~~d~~G-~l~v~~-~~g~i~~~~--~g~~~~~~~~~~~p--------~~gl~~d~dG~l~v~~~~~gv~~~~~~  146 (372)
                      ..|+++++.+|| .||+++ ..+.+..+|  ++++.......+.+        . .+++.+||.+++.+..       ..
T Consensus       124 ~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~Dg~~~~~~~~-------~~  195 (368)
T d1mdah_         124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAAT-HYLGSCPASLAASDLA-------AA  195 (368)
T ss_dssp             CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTE-EECCCCTTSCEEEECC-------SS
T ss_pred             CCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCCce-EEEEcCCCCEEEEEec-------CC
Confidence            468899999999 688888 578899999  55544333221111        1 2233344443333221       11


Q ss_pred             C-cEEEee-ecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCC-------
Q 017371          147 G-VENFLS-YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-------  217 (372)
Q Consensus       147 g-~~~l~~-~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~-------  217 (372)
                      + ...... .........+.....+++|.++++.                   .++++.++...++...+...       
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-------------------~~~v~~~~~~~~~~~~~~~~~~~~~~~  256 (368)
T d1mdah_         196 PAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV-------------------ASSILQGDIPAAGATMKAAIDGNESGR  256 (368)
T ss_dssp             CCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB-------------------SSCCEEEECCSSCCEEECCCCSSCTHH
T ss_pred             ceeeeeeecccccccccceeecccccCcEEEEec-------------------CCCEEEEeecCCceEEEeeccccccee
Confidence            2 111111 1011111234455666677655532                   23455555544443332210       


Q ss_pred             ------ccCcceEEEecCCCEEEEEeCCC--------CeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCC--EEEE
Q 017371          218 ------FYFANGVALSRDEDYVVVCESWK--------FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT--FWIA  281 (372)
Q Consensus       218 ------~~~~~gi~~~~dg~~l~v~~~~~--------~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~--lwva  281 (372)
                            ...+..++++++++.+|+.....        .+|+.++..+.+...  .+.  ....+..+++.+||+  +|++
T Consensus       257 ~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~--~~~--~~~~~~~~a~spDG~~~ly~s  332 (368)
T d1mdah_         257 KADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSG--PIS--NGHDSDAIIAAQDGASDNYAN  332 (368)
T ss_dssp             HHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEE--CCE--EEEEECEEEECCSSSCEEEEE
T ss_pred             eeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeE--Eec--CCCceeEEEECCCCCEEEEEE
Confidence                  01245689999999999875332        358888876543111  111  123478899999995  6777


Q ss_pred             EecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEECC-CCcEEEEEEC
Q 017371          282 IIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVD  337 (372)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~  337 (372)
                      ...                                  .+.|..+|. +|+.+..+..
T Consensus       333 ~~~----------------------------------~~~v~v~D~~tgk~~~~i~~  355 (368)
T d1mdah_         333 SAG----------------------------------TEVLDIYDAASDQDQSSVEL  355 (368)
T ss_dssp             ETT----------------------------------TTEEEEEESSSCEEEEECCC
T ss_pred             eCC----------------------------------CCeEEEEECCCCCEEEEEEC
Confidence            655                                  457888884 6898887754

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.18  E-value=0.0011  Score=58.55  Aligned_cols=182  Identities=12%  Similarity=0.050  Sum_probs=101.2

Q ss_pred             CCccEEEcCCCcEEEEecCCeEEEEe--CCceE-EEEe------------------cCCCcccCeEEcCCCCEEEEeCCC
Q 017371           80 HPEDASMDKNGVIYTATRDGWIKRLQ--DGTWV-NWKF------------------IDSQTLVGLTSTKEGHLIICDNAN  138 (372)
Q Consensus        80 ~p~~i~~d~~G~l~v~~~~g~i~~~~--~g~~~-~~~~------------------~~~~p~~gl~~d~dG~l~v~~~~~  138 (372)
                      ...+++++++|.+.++..++.|..|+  +++.. .+..                  ...... .+++.++|+++++....
T Consensus        64 ~V~~l~fs~dg~~lasg~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~-~l~~s~~~~~l~s~~~d  142 (388)
T d1erja_          64 VVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIR-SVCFSPDGKFLATGAED  142 (388)
T ss_dssp             CCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEE-EEEECTTSSEEEEEETT
T ss_pred             cEEEEEECCCCCEEEEEeCCeEEEEEecccceEeeecccccccccccccccccccCCCCCEE-EEEECCCCCcceecccc
Confidence            46789999999766555688898888  55432 1110                  011234 78999999877665444


Q ss_pred             c-EEEEc-CCC-cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEe
Q 017371          139 G-LHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA  215 (372)
Q Consensus       139 g-v~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~  215 (372)
                      | +..++ ..+ .....   .+. ...+..+++.+++...++-                 ...+.+..+|..+.......
T Consensus       143 g~v~i~~~~~~~~~~~~---~~h-~~~v~~~~~~~~~~~~~~~-----------------~~~~~i~~~d~~~~~~~~~~  201 (388)
T d1erja_         143 RLIRIWDIENRKIVMIL---QGH-EQDIYSLDYFPSGDKLVSG-----------------SGDRTVRIWDLRTGQCSLTL  201 (388)
T ss_dssp             SCEEEEETTTTEEEEEE---CCC-SSCEEEEEECTTSSEEEEE-----------------ETTSEEEEEETTTTEEEEEE
T ss_pred             ccccccccccccccccc---ccc-ccccccccccccccccccc-----------------ccceeeeeeecccccccccc
Confidence            4 55566 444 22111   111 1245567777887655542                 24577888888766655544


Q ss_pred             CCccCcceEEEec-CCCEEEEEeCCCCeEEEEEccCCCCcce-eeecc---CCCCCCceeEEcCCCCEEEEEec
Q 017371          216 DGFYFANGVALSR-DEDYVVVCESWKFRCRKYWLKGERKGKL-ETFAE---NLPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       216 ~~~~~~~gi~~~~-dg~~l~v~~~~~~~i~~~~~~g~~~~~~-~~~~~---~~~g~p~~i~~d~~G~lwva~~~  284 (372)
                      ........+.+.+ +++.+ ++...++.|..++......... .....   ...+....+.+.++|++.++...
T Consensus       202 ~~~~~~~~~~~~~~~~~~l-~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~  274 (388)
T d1erja_         202 SIEDGVTTVAVSPGDGKYI-AAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL  274 (388)
T ss_dssp             ECSSCEEEEEECSTTCCEE-EEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET
T ss_pred             ccccccccccccCCCCCeE-EEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEEC
Confidence            4433444555555 56644 4444556788888754321111 00000   11122456788889886665543

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=98.15  E-value=3.1e-05  Score=71.96  Aligned_cols=171  Identities=10%  Similarity=0.062  Sum_probs=98.4

Q ss_pred             ceEEEEecCCCcccCeEEcCCCCEEEEeCC-CcEEEEc-CCC-cEEEeeecC----CcccccccceEEccC----CcEEE
Q 017371          108 TWVNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG-VENFLSYVN----GSKLRFANDVVEASD----GSLYF  176 (372)
Q Consensus       108 ~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~-~gv~~~~-~~g-~~~l~~~~~----~~~~~~~~~l~~d~d----G~i~v  176 (372)
                      +++.+......|. +|++.+||+|||++.. ..|++++ .++ .+.+.....    .......-+|+++++    +.||+
T Consensus        18 ~~~~ia~~L~~P~-~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYv   96 (450)
T d1crua_          18 DKKVILSNLNKPH-ALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYI   96 (450)
T ss_dssp             CEEEEECCCSSEE-EEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEE
T ss_pred             EEEEEECCCCCce-EEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEE
Confidence            4566677778999 9999999999999854 3488888 556 544433111    111124457899874    78999


Q ss_pred             EeCCCCCCCcccccccccccCCCeEEEE--eCCCCeE---EEEe-----CCccCcceEEEecCCCEEEEEeCC-------
Q 017371          177 TVSSSKYLPHEYCLDILEGKPHGQLLKY--DPSSNIT---TLVA-----DGFYFANGVALSRDEDYVVVCESW-------  239 (372)
Q Consensus       177 td~~~~~~~~~~~~~~~~~~~~g~v~~~--d~~t~~~---~~~~-----~~~~~~~gi~~~~dg~~l~v~~~~-------  239 (372)
                      +-.........     ........+.++  +......   +.+.     ...++...+++++||. ||++--.       
T Consensus        97 syt~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~-LYvs~Gd~~~~~~~  170 (450)
T d1crua_          97 SGTFKNPKSTD-----KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQK-IYYTIGDQGRNQLA  170 (450)
T ss_dssp             EEEEECTTC-------CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSC-EEEEECCTTTTSGG
T ss_pred             EEecCCCCCcc-----cccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCC-EEEEecCCCccccc
Confidence            63310000000     000001123333  3222221   1122     2224456799999996 9987431       


Q ss_pred             -------------------------CCeEEEEEccCCCCc--------ceeeeccCCCCCCceeEEcCCCCEEEEEecCc
Q 017371          240 -------------------------KFRCRKYWLKGERKG--------KLETFAENLPGAPDNINLAPDGTFWIAIIKLD  286 (372)
Q Consensus       240 -------------------------~~~i~~~~~~g~~~~--------~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~  286 (372)
                                               ...|.|++.++....        ..+++...+ ..|-++++|++|+||+++.+..
T Consensus       171 ~~~~~~~~~~~~~~~~~~~q~~~~~~Gkilri~~dg~~~~dnP~~~~~~~ei~a~G~-RNp~g~~~~p~g~l~~~e~G~~  249 (450)
T d1crua_         171 YLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGH-RNPQGLAFTPNGKLLQSEQGPN  249 (450)
T ss_dssp             GTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCC-SEEEEEEECTTSCEEEEEECSS
T ss_pred             ccccccccccCcccccccccccccccCceEEeeccccccccccccccccceEEEecc-ccccceeecccceeeecccccc
Confidence                                     257999988764211        123444332 2478899999999999998643

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.05  E-value=0.00014  Score=63.67  Aligned_cols=133  Identities=12%  Similarity=0.092  Sum_probs=86.6

Q ss_pred             EEcC-CCCEEEEeCCCcEEEEc-CCC-cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCe
Q 017371          124 TSTK-EGHLIICDNANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQ  200 (372)
Q Consensus       124 ~~d~-dG~l~v~~~~~gv~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~  200 (372)
                      -|.| ||+++.......++.++ ..| ...+..   +   ..+..+++.+||+..++-..               .....
T Consensus         9 ~fSP~dG~~~a~~~~g~v~v~d~~~~~~~~~~~---~---~~v~~~~~spDg~~l~~~~~---------------~~g~~   67 (360)
T d1k32a3           9 DFSPLDGDLIAFVSRGQAFIQDVSGTYVLKVPE---P---LRIRYVRRGGDTKVAFIHGT---------------REGDF   67 (360)
T ss_dssp             EEEECGGGCEEEEETTEEEEECTTSSBEEECSC---C---SCEEEEEECSSSEEEEEEEE---------------TTEEE
T ss_pred             cccCCCCCEEEEEECCeEEEEECCCCcEEEccC---C---CCEEEEEECCCCCEEEEEEc---------------CCCCE
Confidence            3556 88877666555688888 555 443321   1   24678999999965443211               12235


Q ss_pred             EEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEE
Q 017371          201 LLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWI  280 (372)
Q Consensus       201 v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv  280 (372)
                      |+.+|.++++.+.+.........++++||++++..+. ....++.++.++.+...  . ..........+++.++|++.+
T Consensus        68 v~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~spdg~~la  143 (360)
T d1k32a3          68 LGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVAN-DRFEIMTVDLETGKPTV--I-ERSREAMITDFTISDNSRFIA  143 (360)
T ss_dssp             EEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEE-TTSEEEEEETTTCCEEE--E-EECSSSCCCCEEECTTSCEEE
T ss_pred             EEEEECCCCcEEEeeCCCceEEeeeecccccccceec-cccccccccccccceee--e-eecccccccchhhccceeeee
Confidence            8889999888887766656667899999999777665 46678888886643221  2 222333456789999997654


Q ss_pred             E
Q 017371          281 A  281 (372)
Q Consensus       281 a  281 (372)
                      .
T Consensus       144 ~  144 (360)
T d1k32a3         144 Y  144 (360)
T ss_dssp             E
T ss_pred             e
Confidence            3

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.04  E-value=0.001  Score=58.02  Aligned_cols=103  Identities=17%  Similarity=0.097  Sum_probs=63.4

Q ss_pred             CCeEEEEeCCCCeEEEEeCC-------------ccCcceEEEecCCCEEEEEeCCC---------CeEEEEEccCCCCcc
Q 017371          198 HGQLLKYDPSSNITTLVADG-------------FYFANGVALSRDEDYVVVCESWK---------FRCRKYWLKGERKGK  255 (372)
Q Consensus       198 ~g~v~~~d~~t~~~~~~~~~-------------~~~~~gi~~~~dg~~l~v~~~~~---------~~i~~~~~~g~~~~~  255 (372)
                      .++++.++..+++...+...             ......+++++|++.+|+.....         ..|..++..+.+.. 
T Consensus       215 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~-  293 (355)
T d2bbkh_         215 TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERL-  293 (355)
T ss_dssp             TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE-
T ss_pred             CCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEE-
Confidence            45666666665554432210             01234588999999999875432         36778887654321 


Q ss_pred             eeeeccCCCCCCceeEEcCCCC--EEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEEC-CCCcEE
Q 017371          256 LETFAENLPGAPDNINLAPDGT--FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVA-EDGTII  332 (372)
Q Consensus       256 ~~~~~~~~~g~p~~i~~d~~G~--lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~-~~g~~~  332 (372)
                       ..+.  ....|.++++++||+  +|++...                                  .+.|..+| .+|+++
T Consensus       294 -~~~~--~~~~~~~~a~spDG~~~l~v~~~~----------------------------------d~~i~v~D~~tg~~~  336 (355)
T d2bbkh_         294 -AKFE--MGHEIDSINVSQDEKPLLYALSTG----------------------------------DKTLYIHDAESGEEL  336 (355)
T ss_dssp             -EEEE--EEEEECEEEECCSSSCEEEEEETT----------------------------------TTEEEEEETTTCCEE
T ss_pred             -EEec--CCCCEEEEEEcCCCCeEEEEEECC----------------------------------CCEEEEEECCCCCEE
Confidence             1111  123478899999996  4555444                                  46788888 469999


Q ss_pred             EEEECC
Q 017371          333 RNLVDP  338 (372)
Q Consensus       333 ~~~~~~  338 (372)
                      ..+...
T Consensus       337 ~~i~~~  342 (355)
T d2bbkh_         337 RSVNQL  342 (355)
T ss_dssp             EEECCC
T ss_pred             EEEeCc
Confidence            887543

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.02  E-value=0.00076  Score=59.54  Aligned_cols=185  Identities=8%  Similarity=-0.005  Sum_probs=100.3

Q ss_pred             CCCccEEEcCCC-cEEEEe-cCCeEEEEe--CCceEEEEe-----cCCC--cccCeEEcCCCCEEEEeCCCcEEEEc-CC
Q 017371           79 NHPEDASMDKNG-VIYTAT-RDGWIKRLQ--DGTWVNWKF-----IDSQ--TLVGLTSTKEGHLIICDNANGLHKVS-ED  146 (372)
Q Consensus        79 ~~p~~i~~d~~G-~l~v~~-~~g~i~~~~--~g~~~~~~~-----~~~~--p~~gl~~d~dG~l~v~~~~~gv~~~~-~~  146 (372)
                      ..|.++++.++| .+|++. .+|.+..++  .++......     ....  +. .+..++++.+........++.++ ..
T Consensus       165 ~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~  243 (373)
T d2madh_         165 SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQ-PAQANKSGRIVWPVYSGKILQADISA  243 (373)
T ss_pred             ccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceee-eEEECCCceEEEecCCceEEEEEcCC
Confidence            457778888777 455554 788888888  333322211     1111  22 34445555443333334466665 32


Q ss_pred             C-cEEEeee-cC-------CcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeC
Q 017371          147 G-VENFLSY-VN-------GSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD  216 (372)
Q Consensus       147 g-~~~l~~~-~~-------~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~  216 (372)
                      + ...+... ..       .........+++.++|. +|+.....        .........+.+..+|..+++......
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--------~~~~~~~~~~~v~~~d~~t~~~~~~~~  315 (373)
T d2madh_         244 AGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQ--------SAWKLHAAAKEVTSVTGLVGQTSSQIS  315 (373)
T ss_pred             CeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCC--------ceEEeecCCCeEEEEECCCCcEEEEec
Confidence            2 2221110 00       00011233466667764 44432110        011122345678899988887665555


Q ss_pred             CccCcceEEEecCCCE-EEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCC
Q 017371          217 GFYFANGVALSRDEDY-VVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPD  275 (372)
Q Consensus       217 ~~~~~~gi~~~~dg~~-l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~  275 (372)
                      .-..+.+++|+|||+. +|++...++.|..|+..+.+.  ...+ ......|..+++..+
T Consensus       316 ~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~--~~~~-~~~g~~P~~l~~~~~  372 (373)
T d2madh_         316 LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQ--DQST-VELGSGPQVLSVMNE  372 (373)
T ss_pred             CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCE--EEEE-CCCCCCCcEEEEecC
Confidence            5567889999999987 467777788899999865432  2222 223345888888665

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.02  E-value=7.9e-06  Score=75.30  Aligned_cols=197  Identities=8%  Similarity=-0.036  Sum_probs=109.0

Q ss_pred             CCCC-EEEEeCC-CcEEEEc-CCC-cEEEeeecCCcccccccceEEccCC-cEEEEeCCCCCCC--cccccccccccCCC
Q 017371          127 KEGH-LIICDNA-NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLP--HEYCLDILEGKPHG  199 (372)
Q Consensus       127 ~dG~-l~v~~~~-~gv~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~d~dG-~i~vtd~~~~~~~--~~~~~~~~~~~~~g  199 (372)
                      +||+ |||++.. ..|.++| .++ ...... .+.  ...++++++.++| ++|++..+. +..  ..............
T Consensus        81 pDGr~lfV~d~~~~rVavIDl~t~k~~~ii~-iP~--g~gphgi~~spdg~t~YV~~~~~-~~v~~~~dg~~~~~~~~~~  156 (441)
T d1qnia2          81 YDGKYLFINDKANTRVARIRLDIMKTDKITH-IPN--VQAIHGLRLQKVPKTNYVFCNAE-FVIPQPNDGTDFSLDNSYT  156 (441)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEE-CTT--CCCEEEEEECCSSBCCEEEEEEC-SCEESSCSSSCCCGGGEEE
T ss_pred             CCCCEEEEEcCCCCEEEEEECCCCcEeeEEe-cCC--CCCccceEEeccCCEEEEEeccC-CcccccCcccccccccccc
Confidence            6885 8898865 5699999 666 332222 111  2468899999998 467765421 110  00000111112224


Q ss_pred             eEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEE
Q 017371          200 QLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFW  279 (372)
Q Consensus       200 ~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lw  279 (372)
                      .+..+|+.+.++......-..|.++++++||+++|++..+...+..++....+....-...    ..|..+.+.++|++.
T Consensus       157 ~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~----n~p~~~~~~~dGk~~  232 (441)
T d1qnia2         157 MFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVF----NVERIAAAVKAGNFK  232 (441)
T ss_dssp             EEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEE----EHHHHHHHHHTTCCB
T ss_pred             eEEeecCccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeC----CccceEEEecCCCEE
Confidence            4567898877665433334568899999999999999876655544433222111111111    124445555666422


Q ss_pred             EEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEEC--CCCcEEEEEECCCCCeeccceeeEE--ECCE
Q 017371          280 IAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVA--EDGTIIRNLVDPTGQLMSFVTSGLQ--VDNH  355 (372)
Q Consensus       280 va~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~--~~g~~~~~~~~~~g~~~~~~t~~~~--~~g~  355 (372)
                      .. ..                                  + .+..++  ...+++..+..  |+   .+.++..  ++.+
T Consensus       233 ~v-~~----------------------------------~-~v~vvd~~~~~~v~~~IPv--gk---sPhGv~vSPDGky  271 (441)
T d1qnia2         233 TI-GD----------------------------------S-KVPVVDGRGESEFTRYIPV--PK---NPHGLNTSPDGKY  271 (441)
T ss_dssp             CC-TT----------------------------------C-CCCEEECSSSCSSEEEECC--BS---SCCCEEECTTSCE
T ss_pred             Ee-CC----------------------------------C-CcEEEEcccCCceEEEEeC--CC---CccCceECCCCCE
Confidence            11 11                                  1 223333  23455555543  43   2344444  4578


Q ss_pred             EEEEeCCCCeEEEEeCC
Q 017371          356 LYVISLTSNFIGKVQLS  372 (372)
Q Consensus       356 L~igs~~~~~i~~~~~~  372 (372)
                      +|+++...+.|.+++++
T Consensus       272 l~~~~~~~~tvsv~d~~  288 (441)
T d1qnia2         272 FIANGKLSPTVSVIAID  288 (441)
T ss_dssp             EEEECTTSSBEEEEEGG
T ss_pred             EEEeCCcCCcEEEEEee
Confidence            99999999999999863

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.96  E-value=9.6e-05  Score=65.81  Aligned_cols=101  Identities=8%  Similarity=0.076  Sum_probs=71.7

Q ss_pred             ecCCCCCCCccEEEcCCCcEEEEec------------------CCeEEEEeCCceEEEEecCCCcccCeEEcCCC-CEEE
Q 017371           73 VGEGSVNHPEDASMDKNGVIYTATR------------------DGWIKRLQDGTWVNWKFIDSQTLVGLTSTKEG-HLII  133 (372)
Q Consensus        73 ~~~g~~~~p~~i~~d~~G~l~v~~~------------------~g~i~~~~~g~~~~~~~~~~~p~~gl~~d~dG-~l~v  133 (372)
                      +....+..|.++++..+|.+|+++.                  .|.++.++.++.+........|+ ||++++|+ .|||
T Consensus       144 v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~~~~l~~pN-GI~~s~d~~~lyV  222 (340)
T d1v04a_         144 IRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAEGFDFAN-GINISPDGKYVYI  222 (340)
T ss_dssp             ECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEEEEEESSEE-EEEECTTSSEEEE
T ss_pred             cCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEEcCCCCccc-eeEECCCCCEEEE
Confidence            3344567899999999999999962                  24566666556666666678899 99999998 5899


Q ss_pred             EeCC-CcEEEEc--CCC-cEEEee-ecCCcccccccceEEcc-CCcEEEEe
Q 017371          134 CDNA-NGLHKVS--EDG-VENFLS-YVNGSKLRFANDVVEAS-DGSLYFTV  178 (372)
Q Consensus       134 ~~~~-~gv~~~~--~~g-~~~l~~-~~~~~~~~~~~~l~~d~-dG~i~vtd  178 (372)
                      ++.. ..|.+++  .++ .+.... ..+    ..|..|.+|+ +|.+|++-
T Consensus       223 a~t~~~~i~~y~~~~~~~l~~~~~~~l~----~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         223 AELLAHKIHVYEKHANWTLTPLRVLSFD----TLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             EEGGGTEEEEEEECTTSCEEEEEEEECS----SEEEEEEECTTTCCEEEEE
T ss_pred             EeCCCCeEEEEEeCCCcccceEEEecCC----CCCCccEEecCCCEEEEEE
Confidence            9876 4577766  344 333221 223    3678999985 78999974

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.88  E-value=0.0018  Score=57.38  Aligned_cols=145  Identities=10%  Similarity=-0.007  Sum_probs=83.5

Q ss_pred             CcccCeEEcCCCCEEEEeCCCc-EEEEc-CCC-cEEEeeecCCcccccccceEEccCCcEEEEeCCCCCCCccccccccc
Q 017371          118 QTLVGLTSTKEGHLIICDNANG-LHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILE  194 (372)
Q Consensus       118 ~p~~gl~~d~dG~l~v~~~~~g-v~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~  194 (372)
                      .|+..+++++||+++++....| |..++ ..+ .+.+.. ..+- ...+..|++.++|+..++-+               
T Consensus         8 ~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~-l~gH-~~~V~~l~fsp~~~~l~s~s---------------   70 (371)
T d1k8kc_           8 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHE-LKEH-NGQVTGVDWAPDSNRIVTCG---------------   70 (371)
T ss_dssp             SCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEE-EECC-SSCEEEEEEETTTTEEEEEE---------------
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEE-ecCC-CCCEEEEEECCCCCEEEEEE---------------
Confidence            4555899999998776655544 66677 445 333221 1111 12467899999998776522               


Q ss_pred             ccCCCeEEEEeCCCCeEEEEe--CC-ccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcc-eeeeccCCCCCCcee
Q 017371          195 GKPHGQLLKYDPSSNITTLVA--DG-FYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGK-LETFAENLPGAPDNI  270 (372)
Q Consensus       195 ~~~~g~v~~~d~~t~~~~~~~--~~-~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~-~~~~~~~~~g~p~~i  270 (372)
                        .++.|..+|.++++.+...  .+ ......++|+|+++.++++.. +..|..+..+...... .........+....+
T Consensus        71 --~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~-d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v  147 (371)
T d1k8kc_          71 --TDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSG-SRVISICYFEQENDWWVCKHIKKPIRSTVLSL  147 (371)
T ss_dssp             --TTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEET-TSSEEEEEEETTTTEEEEEEECTTCCSCEEEE
T ss_pred             --CCCeEEEEeecccccccccccccccccccccccccccccceeecc-cCcceeeeeecccccccccccccccccccccc
Confidence              3566777776656554332  22 223467889999997776653 4445555544322111 111111122234567


Q ss_pred             EEcCCCCEEEEE
Q 017371          271 NLAPDGTFWIAI  282 (372)
Q Consensus       271 ~~d~~G~lwva~  282 (372)
                      +++++|++.++.
T Consensus       148 ~~~p~~~~l~s~  159 (371)
T d1k8kc_         148 DWHPNSVLLAAG  159 (371)
T ss_dssp             EECTTSSEEEEE
T ss_pred             cccccccceecc
Confidence            788888776654

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.88  E-value=0.0051  Score=51.58  Aligned_cols=153  Identities=12%  Similarity=0.080  Sum_probs=90.2

Q ss_pred             CCCCCCccEEEcCCCcEE-EEecCCeEEEEe--CCce-EEEEecCCCcccCeEEcCCCCEEEEeCCC-cEEEEc-CCCcE
Q 017371           76 GSVNHPEDASMDKNGVIY-TATRDGWIKRLQ--DGTW-VNWKFIDSQTLVGLTSTKEGHLIICDNAN-GLHKVS-EDGVE  149 (372)
Q Consensus        76 g~~~~p~~i~~d~~G~l~-v~~~~g~i~~~~--~g~~-~~~~~~~~~p~~gl~~d~dG~l~v~~~~~-gv~~~~-~~g~~  149 (372)
                      |.-..-.+|++.++|.+. .++.||.|..|+  +++. ..+....+... .+++.+++.+.+..... .+...+ .....
T Consensus        15 GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (317)
T d1vyhc1          15 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQ-DISFDHSGKLLASCSADMTIKLWDFQGFEC   93 (317)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEE-EEEECTTSSEEEEEETTSCCCEEETTSSCE
T ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEE-EEeeeccccccccccccccccccccccccc
Confidence            333456789999988654 555899999998  5543 33332233445 89999999876664443 344444 22211


Q ss_pred             EEeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeC-CccCcceEEEec
Q 017371          150 NFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-GFYFANGVALSR  228 (372)
Q Consensus       150 ~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~-~~~~~~gi~~~~  228 (372)
                      ....  .+. ......+.+.+++...++-.                 .++.+..+|..+++...... .......+++++
T Consensus        94 ~~~~--~~~-~~~~~~~~~~~~~~~~~~~~-----------------~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (317)
T d1vyhc1          94 IRTM--HGH-DHNVSSVSIMPNGDHIVSAS-----------------RDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ  153 (317)
T ss_dssp             EECC--CCC-SSCEEEEEECSSSSEEEEEE-----------------TTSEEEEEETTTCCEEEEEECCSSCEEEEEECT
T ss_pred             cccc--ccc-cccceeeeccCCCceEEeec-----------------cCcceeEeecccceeeeEEccCCCcceeeeccc
Confidence            1110  110 12344677778887666522                 45677788877666544333 233445788999


Q ss_pred             CCCEEEEEeCCCCeEEEEEccC
Q 017371          229 DEDYVVVCESWKFRCRKYWLKG  250 (372)
Q Consensus       229 dg~~l~v~~~~~~~i~~~~~~g  250 (372)
                      +++.+..+. .+..|..++...
T Consensus       154 ~~~~l~~~~-~d~~v~~~~~~~  174 (317)
T d1vyhc1         154 DGTLIASCS-NDQTVRVWVVAT  174 (317)
T ss_dssp             TSSEEEEEE-TTSCEEEEETTT
T ss_pred             CCCEEEEEe-CCCeEEEEeecc
Confidence            998555444 455677777654

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.82  E-value=0.0074  Score=51.55  Aligned_cols=60  Identities=12%  Similarity=0.155  Sum_probs=38.4

Q ss_pred             cEEEcCCCcEEEEecCCeEEEEe--CCceE-EEEecCCCcccCeEEcCCCCEEEEeCCCcEEEEc
Q 017371           83 DASMDKNGVIYTATRDGWIKRLQ--DGTWV-NWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS  144 (372)
Q Consensus        83 ~i~~d~~G~l~v~~~~g~i~~~~--~g~~~-~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~  144 (372)
                      ++.+| +..|+.|+.||.|..|+  +++.. .+..-.+... ++++.+++.|+.+..+..+..++
T Consensus        18 c~~~~-~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~-~l~~s~~~~l~s~s~D~~i~iw~   80 (355)
T d1nexb2          18 CLQFE-DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVW-ALKYAHGGILVSGSTDRTVRVWD   80 (355)
T ss_dssp             EEEEE-TTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEE-EEEEETTTEEEEEETTCCEEEEE
T ss_pred             EEEEC-CCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEE-EEEEcCCCEEEEEeccccccccc
Confidence            45555 33677777999999999  55533 3332233445 89998877666655555566666

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.80  E-value=0.00074  Score=58.13  Aligned_cols=140  Identities=11%  Similarity=0.067  Sum_probs=84.7

Q ss_pred             EEEcCCCcEEE-EecCCeEEEEe--CCceEE-EEecCCCcccCeEEcCCCCEEEEeCCCc-EEEEc-CCC--cEEEeeec
Q 017371           84 ASMDKNGVIYT-ATRDGWIKRLQ--DGTWVN-WKFIDSQTLVGLTSTKEGHLIICDNANG-LHKVS-EDG--VENFLSYV  155 (372)
Q Consensus        84 i~~d~~G~l~v-~~~~g~i~~~~--~g~~~~-~~~~~~~p~~gl~~d~dG~l~v~~~~~g-v~~~~-~~g--~~~l~~~~  155 (372)
                      ....+.+.+.+ +..++.|..++  +++... +....+... .+++.++|+++++....| +..++ ...  ...+... 
T Consensus       190 ~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~-~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~-  267 (340)
T d1tbga_         190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDIN-AICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD-  267 (340)
T ss_dssp             EEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEE-EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCT-
T ss_pred             eccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeE-EEEECCCCCEEEEEeCCCeEEEEeecccccccccccc-
Confidence            44445555544 45788888888  454332 322223445 899999998776644444 66666 433  2222111 


Q ss_pred             CCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCcc-CcceEEEecCCCEEE
Q 017371          156 NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFY-FANGVALSRDEDYVV  234 (372)
Q Consensus       156 ~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~-~~~gi~~~~dg~~l~  234 (372)
                        .....+..+++.++|++.++-                 ..+|.|..+|..+++......+.. .-..+++++|+++|+
T Consensus       268 --~~~~~i~~~~~s~~~~~l~~g-----------------~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~  328 (340)
T d1tbga_         268 --NIICGITSVSFSKSGRLLLAG-----------------YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVA  328 (340)
T ss_dssp             --TCCSCEEEEEECSSSCEEEEE-----------------ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEE
T ss_pred             --cccCceEEEEECCCCCEEEEE-----------------ECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEE
Confidence              112345678999999877752                 246789999988777655554433 336789999998665


Q ss_pred             EEeCCCCeEEE
Q 017371          235 VCESWKFRCRK  245 (372)
Q Consensus       235 v~~~~~~~i~~  245 (372)
                      .+. .++.|..
T Consensus       329 s~s-~Dg~v~i  338 (340)
T d1tbga_         329 TGS-WDSFLKI  338 (340)
T ss_dssp             EEE-TTSCEEE
T ss_pred             EEc-cCCEEEE
Confidence            544 3444543

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.59  E-value=0.014  Score=48.63  Aligned_cols=225  Identities=13%  Similarity=0.092  Sum_probs=118.6

Q ss_pred             CCCccEEEcCCCcEEEEe-cCCeEEEEe--CCceEEE-EecCCCcccCeEEcCCCCEEEEeCCCc-EEEEc-CCC--cEE
Q 017371           79 NHPEDASMDKNGVIYTAT-RDGWIKRLQ--DGTWVNW-KFIDSQTLVGLTSTKEGHLIICDNANG-LHKVS-EDG--VEN  150 (372)
Q Consensus        79 ~~p~~i~~d~~G~l~v~~-~~g~i~~~~--~g~~~~~-~~~~~~p~~gl~~d~dG~l~v~~~~~g-v~~~~-~~g--~~~  150 (372)
                      ....++++.+++.+.+.. .++.+..++  ..+.... ........ .+.+.++++..++....+ +..++ .++  ...
T Consensus        60 ~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  138 (317)
T d1vyhc1          60 DSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVS-SVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKT  138 (317)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEE-EEEECSSSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             CcEEEEeeecccccccccccccccccccccccccccccccccccce-eeeccCCCceEEeeccCcceeEeecccceeeeE
Confidence            345678888888655544 566566665  2222211 11122334 677888887666544444 55566 555  333


Q ss_pred             EeeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCcc-Ccc-------
Q 017371          151 FLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFY-FAN-------  222 (372)
Q Consensus       151 l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~-~~~-------  222 (372)
                      +...     ......++++++|++.++-.                 .++.|..++..+++......... ...       
T Consensus       139 ~~~~-----~~~~~~~~~~~~~~~l~~~~-----------------~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  196 (317)
T d1vyhc1         139 FTGH-----REWVRMVRPNQDGTLIASCS-----------------NDQTVRVWVVATKECKAELREHRHVVECISWAPE  196 (317)
T ss_dssp             EECC-----SSCEEEEEECTTSSEEEEEE-----------------TTSCEEEEETTTCCEEEEECCCSSCEEEEEECCS
T ss_pred             EccC-----CCcceeeecccCCCEEEEEe-----------------CCCeEEEEeeccceeeEEEecCCCCceEEEEeec
Confidence            3211     12345678888888776532                 34556666655544333222111 011       


Q ss_pred             -------------eEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEEecCchhH
Q 017371          223 -------------GVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARR  289 (372)
Q Consensus       223 -------------gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~~~~~~~~  289 (372)
                                   ......++. ++++.+.++.|..++....+  ....+. ........+++.++|++.++...     
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~~~~~~~~~--~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~-----  267 (317)
T d1vyhc1         197 SSYSSISEATGSETKKSGKPGP-FLLSGSRDKTIKMWDVSTGM--CLMTLV-GHDNWVRGVLFHSGGKFILSCAD-----  267 (317)
T ss_dssp             CGGGGGGGCCSCC-------CC-EEEEEETTSEEEEEETTTTE--EEEEEE-CCSSCEEEEEECSSSSCEEEEET-----
T ss_pred             cccceeeccccceeeeeccCCc-eeEeccCCCEEEEEECCCCc--EEEEEe-CCCCCEEEEEECCCCCEEEEEEC-----
Confidence                         122233344 34444455667777765432  112222 22233567889999987766554     


Q ss_pred             HHHhhcchhHHHHHHhcCccccccccCCCceEEEEEC-CCCcEEEEEECCCCCeeccceeeEEE-C-CEEEEEeCCCCeE
Q 017371          290 MKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQV-D-NHLYVISLTSNFI  366 (372)
Q Consensus       290 ~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~-~-g~L~igs~~~~~i  366 (372)
                                                   .+.|..+| .+++.+..+....+    .++++... + ..|..|+. ...|
T Consensus       268 -----------------------------dg~i~iwd~~~~~~~~~~~~h~~----~V~~~~~s~~~~~l~s~s~-Dg~i  313 (317)
T d1vyhc1         268 -----------------------------DKTLRVWDYKNKRCMKTLNAHEH----FVTSLDFHKTAPYVVTGSV-DQTV  313 (317)
T ss_dssp             -----------------------------TTEEEEECCTTSCCCEEEECCSS----CEEEEEECSSSSCEEEEET-TSEE
T ss_pred             -----------------------------CCeEEEEECCCCcEEEEEcCCCC----CEEEEEEcCCCCEEEEEeC-CCeE
Confidence                                         46777788 46888888865433    47777775 3 45665554 3456


Q ss_pred             EEE
Q 017371          367 GKV  369 (372)
Q Consensus       367 ~~~  369 (372)
                      .++
T Consensus       314 ~iW  316 (317)
T d1vyhc1         314 KVW  316 (317)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            554

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.57  E-value=0.00071  Score=60.08  Aligned_cols=107  Identities=5%  Similarity=-0.151  Sum_probs=67.5

Q ss_pred             cceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCC---
Q 017371          164 NDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW---  239 (372)
Q Consensus       164 ~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~---  239 (372)
                      ..++..++|+ .|++...             ......+|+.+|+++++.......-. ..+++++|||+++|+++..   
T Consensus        23 ~~~a~~~~~~~~~v~~~~-------------~~~g~~~~~~~d~~~~~~~~~~~~~~-~~~~a~spDg~~i~~~~~~~~~   88 (368)
T d1mdah_          23 CDHGPGAISRRSHITLPA-------------YFAGTTENWVSCAGCGVTLGHSLGAF-LSLAVAGHSGSDFALASTSFAR   88 (368)
T ss_dssp             BCCCCCCCTTEEEEEECT-------------TTCSSEEEEEEETTTTEEEEEEEECT-TCEEEECTTSSCEEEEEEEETT
T ss_pred             cccccCCCCcceeEEeec-------------cCCCcceEEEEeCCCCcEEEEEeCCC-CCcceECCCCCEEEEEcccCcc
Confidence            3455667774 5665321             12245679999999998766544333 3489999999999998742   


Q ss_pred             ------CCeEEEEEccCCCCcceeeecc----CCCCCCceeEEcCCC-CEEEEEec
Q 017371          240 ------KFRCRKYWLKGERKGKLETFAE----NLPGAPDNINLAPDG-TFWIAIIK  284 (372)
Q Consensus       240 ------~~~i~~~~~~g~~~~~~~~~~~----~~~g~p~~i~~d~~G-~lwva~~~  284 (372)
                            .+.|..|+..+.+....-....    .....|.++++.+|| .+|++...
T Consensus        89 ~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~  144 (368)
T d1mdah_          89 SAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFG  144 (368)
T ss_dssp             TTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECS
T ss_pred             ccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCC
Confidence                  2348888876543221111111    112358899999999 58888765

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.48  E-value=0.0028  Score=56.96  Aligned_cols=202  Identities=13%  Similarity=0.105  Sum_probs=112.2

Q ss_pred             CCCCCCccEEEc--CCC-cEEEEe-cCCeEEEEe--CCceEEEE--ecCCCcccCeEEcCCC-CEEEEeCCC--------
Q 017371           76 GSVNHPEDASMD--KNG-VIYTAT-RDGWIKRLQ--DGTWVNWK--FIDSQTLVGLTSTKEG-HLIICDNAN--------  138 (372)
Q Consensus        76 g~~~~p~~i~~d--~~G-~l~v~~-~~g~i~~~~--~g~~~~~~--~~~~~p~~gl~~d~dG-~l~v~~~~~--------  138 (372)
                      |....|+--..|  .|| .||+.+ .+++|.+++  .-+...+.  +....+. |++..+++ ..||.....        
T Consensus        83 GD~HHP~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~H-G~r~~~~p~T~YV~~~~e~~vP~pnd  161 (459)
T d1fwxa2          83 GDLHHVHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIH-GLRPQKWPRSNYVFCNGEDETPLVND  161 (459)
T ss_dssp             CCBCCEEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEE-EEEECCSSBCSEEEEEECSCEESSCS
T ss_pred             CCcCCCcccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCc-eeecccCCCeEEEEccCccccccCCC
Confidence            445667433333  256 688888 799999999  44554443  3344667 88887665 467764221        


Q ss_pred             -----------c-EEEEc-CCC-cEEEeeecCCcccccccceEEccCCcE-EEEeCCCCCCCc---------cccc----
Q 017371          139 -----------G-LHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSL-YFTVSSSKYLPH---------EYCL----  190 (372)
Q Consensus       139 -----------g-v~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~d~dG~i-~vtd~~~~~~~~---------~~~~----  190 (372)
                                 + +..+| .+. +..- -..++    .+.+++++++|+. |++...++-+..         ++..    
T Consensus       162 g~~l~d~~~y~~~~t~ID~~tm~V~~Q-V~V~g----~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~  236 (459)
T d1fwxa2         162 GTNMEDVANYVNVFTAVDADKWEVAWQ-VLVSG----NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNI  236 (459)
T ss_dssp             SSSTTCGG-EEEEEEEEETTTTEEEEE-EEESS----CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEH
T ss_pred             CccccchhhcceEEEEEecCCceEEEE-eeeCC----ChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEech
Confidence                       1 23455 333 1110 11122    4678999999964 444333221110         0100    


Q ss_pred             ----ccc-cc--cCCCeEEEEeCCC---CeEEEEeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccC------CCCc
Q 017371          191 ----DIL-EG--KPHGQLLKYDPSS---NITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKG------ERKG  254 (372)
Q Consensus       191 ----~~~-~~--~~~g~v~~~d~~t---~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g------~~~~  254 (372)
                          ... .+  ..-+++-.+|..+   ..+..+...-..|.|+.++|||+++|+++.....+..|+..-      .+..
T Consensus       237 ~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~  316 (459)
T d1fwxa2         237 AEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENAD  316 (459)
T ss_dssp             HHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-
T ss_pred             HHhHHhhhcCCcEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCC
Confidence                000 00  1113355566542   122223334467999999999999999999999999999741      0111


Q ss_pred             -ceeeeccC-CCCCCceeEEcCCCCEEEEEe
Q 017371          255 -KLETFAEN-LPGAPDNINLAPDGTFWIAII  283 (372)
Q Consensus       255 -~~~~~~~~-~~g~p~~i~~d~~G~lwva~~  283 (372)
                       ......+. +.-.|--.++|.+|+.|.+..
T Consensus       317 ~~~~~~~e~elglgPLht~fd~~g~aytslf  347 (459)
T d1fwxa2         317 PRSAVVAEPELGLGPLHTAFDGRGNAYTSLF  347 (459)
T ss_dssp             GGGGEEECCBCCSCEEEEEECTTSEEEEEET
T ss_pred             ccccEEeecccCcCccccccCCCceEEEEee
Confidence             11111111 111366678999999999975

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.20  E-value=0.0025  Score=56.94  Aligned_cols=136  Identities=13%  Similarity=0.171  Sum_probs=86.3

Q ss_pred             CccEEEcCCCcEEEEecCCeEEEEe--CCce-EEEEec-----CCCcccCeEEcCCCCEEEEeCC-C--c-EEEEc-CCC
Q 017371           81 PEDASMDKNGVIYTATRDGWIKRLQ--DGTW-VNWKFI-----DSQTLVGLTSTKEGHLIICDNA-N--G-LHKVS-EDG  147 (372)
Q Consensus        81 p~~i~~d~~G~l~v~~~~g~i~~~~--~g~~-~~~~~~-----~~~p~~gl~~d~dG~l~v~~~~-~--g-v~~~~-~~g  147 (372)
                      ..++++.++|.|.++..||.|..|+  .++. ..+...     ...+...+++.|||+++++... .  + +..++ .+|
T Consensus       187 ~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g  266 (393)
T d1sq9a_         187 ATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG  266 (393)
T ss_dssp             CCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTC
T ss_pred             EEEEEECCCCEEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccc
Confidence            5578888999888888999999999  4543 222211     1223338999999997776432 2  2 44456 556


Q ss_pred             --cEEEeeecCC--------cccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCC
Q 017371          148 --VENFLSYVNG--------SKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG  217 (372)
Q Consensus       148 --~~~l~~~~~~--------~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~  217 (372)
                        ...+......        .-...+..+++.+||++.++-+                 .++.|..+|.++++......+
T Consensus       267 ~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s-----------------~D~~v~vWd~~~g~~~~~l~g  329 (393)
T d1sq9a_         267 ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAG-----------------WDGKLRFWDVKTKERITTLNM  329 (393)
T ss_dssp             CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEE-----------------TTSEEEEEETTTTEEEEEEEC
T ss_pred             eeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEEC-----------------CCCEEEEEECCCCCEEEEECC
Confidence              4444221100        0112467899999999888633                 578899999988887665544


Q ss_pred             cc-----CcceEEEecCCCEE
Q 017371          218 FY-----FANGVALSRDEDYV  233 (372)
Q Consensus       218 ~~-----~~~gi~~~~dg~~l  233 (372)
                      ..     ....+++++++..+
T Consensus       330 H~~~v~~~~~~~~~~~~~~~~  350 (393)
T d1sq9a_         330 HCDDIEIEEDILAVDEHGDSL  350 (393)
T ss_dssp             CGGGCSSGGGCCCBCTTSCBC
T ss_pred             cCCcccCCccEEEECCCCCEE
Confidence            32     22357788888743

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.15  E-value=0.098  Score=49.04  Aligned_cols=130  Identities=19%  Similarity=0.253  Sum_probs=77.1

Q ss_pred             cccCceEecCCCCCC--CccEEEcCCCcEEEEec-CCeEEEEe--C-CceEEEEecC------------C-CcccCeEEc
Q 017371           66 QLQDFIKVGEGSVNH--PEDASMDKNGVIYTATR-DGWIKRLQ--D-GTWVNWKFID------------S-QTLVGLTST  126 (372)
Q Consensus        66 ~l~~~~~~~~g~~~~--p~~i~~d~~G~l~v~~~-~g~i~~~~--~-g~~~~~~~~~------------~-~p~~gl~~d  126 (372)
                      .|.-++....|...+  ..-|.+  +|.||+++. ++.|+.+|  + |+.. |....            . ... |+++.
T Consensus        39 ~L~~aW~~~~g~~~~~~~tP~v~--~g~vyv~t~~~~~v~Alda~~tG~~~-W~~~~~~~~~~~~~~~~~~~~r-g~a~~  114 (571)
T d2ad6a1          39 NVKAAWSFSTGVLNGHEGAPLVI--GDMMYVHSAFPNNTYALNLNDPGKIV-WQHKPKQDASTKAVMCCDVVDR-GLAYG  114 (571)
T ss_dssp             GCEEEEEEECSCCSCCCSCCEEE--TTEEEEECSTTTCEEEEETTCTTSEE-EEECCCCCGGGGGGCTTCSCCC-CCEEE
T ss_pred             hceEEEEEeCCCCCCcccCCEEE--CCEEEEecCCCCeEEEEeCCCCCceE-EEecCCCCcccccccccCcCCC-cceee
Confidence            355566666553323  223444  689999985 68999999  3 6543 32210            0 113 56665


Q ss_pred             CCCCEEEEeCCCcEEEEc-CCCcEEEeeec----CCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeE
Q 017371          127 KEGHLIICDNANGLHKVS-EDGVENFLSYV----NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQL  201 (372)
Q Consensus       127 ~dG~l~v~~~~~gv~~~~-~~g~~~l~~~~----~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v  201 (372)
                       +++||+.+....++.+| ++|........    .+.....+ .+.  -++.+++..++.            +....|.|
T Consensus       115 -~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~-p~v--~~~~vivg~~~~------------~~~~~G~v  178 (571)
T d2ad6a1         115 -AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQA-PFV--AKDTVLMGCSGA------------ELGVRGAV  178 (571)
T ss_dssp             -TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSC-CEE--ETTEEEEECBCG------------GGTCCCEE
T ss_pred             -CCeEEEEeCCCcEEeeehhhhhhhccccccccccccceeec-CeE--eCCeEEEeeccc------------cccccCcE
Confidence             68899998776799999 77733222221    11111111 122  357888875431            22356889


Q ss_pred             EEEeCCCCeEEEEe
Q 017371          202 LKYDPSSNITTLVA  215 (372)
Q Consensus       202 ~~~d~~t~~~~~~~  215 (372)
                      +.+|..||+..+..
T Consensus       179 ~a~D~~TG~~~W~~  192 (571)
T d2ad6a1         179 NAFDLKTGELKWRA  192 (571)
T ss_dssp             EEEETTTCCEEEEE
T ss_pred             EEEECCCCcEEEEE
Confidence            99999999988753

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.03  E-value=0.065  Score=50.20  Aligned_cols=134  Identities=13%  Similarity=0.118  Sum_probs=74.1

Q ss_pred             cccCceEecCCCCCC--CccEEEcCCCcEEEEecCCeEEEEe--CCceEEEEecC------------CCcccCeEEcCCC
Q 017371           66 QLQDFIKVGEGSVNH--PEDASMDKNGVIYTATRDGWIKRLQ--DGTWVNWKFID------------SQTLVGLTSTKEG  129 (372)
Q Consensus        66 ~l~~~~~~~~g~~~~--p~~i~~d~~G~l~v~~~~g~i~~~~--~g~~~~~~~~~------------~~p~~gl~~d~dG  129 (372)
                      .|.-++.+..+...+  ..-+.+  +|.||+++.++.|+.+|  +|+.. |....            .....+++.. ++
T Consensus        43 ~L~~aW~~~~~~~~~~~stPiv~--~g~vyv~t~~~~v~AlDa~tG~~l-W~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  118 (560)
T d1kv9a2          43 SLGLAWYMDLDNTRGLEATPLFH--DGVIYTSMSWSRVIAVDAASGKEL-WRYDPEVAKVKARTSCCDAVNRGVALW-GD  118 (560)
T ss_dssp             GEEEEEEEECSCCSCCCCCCEEE--TTEEEEEEGGGEEEEEETTTCCEE-EEECCCCCGGGGGGCTTCSCCCCCEEE-BT
T ss_pred             cceEEEEEECCCCCCcEeCCEEE--CCEEEEECCCCeEEEEeCCCCCEE-EEECCCCCccccccccccccccCccee-CC
Confidence            355556555442222  222444  68999999999999999  67644 32110            0111144444 56


Q ss_pred             CEEEEeCCCcEEEEc-CCCcEEEeeecCCc-ccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCC
Q 017371          130 HLIICDNANGLHKVS-EDGVENFLSYVNGS-KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS  207 (372)
Q Consensus       130 ~l~v~~~~~gv~~~~-~~g~~~l~~~~~~~-~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~  207 (372)
                      ++|+.+....|+.+| .+|........... .......--.--+|.+++.....            +....|.|..+|..
T Consensus       119 ~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~------------~~~~~G~v~a~D~~  186 (560)
T d1kv9a2         119 KVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGA------------EYGVRGFVSAYDAD  186 (560)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCT------------TTCCBCEEEEEETT
T ss_pred             eEEEEeCCCEEEEEECCCCcEEeccCccCcccceeeeeeeeeecCcccccccce------------eccccceEEEEECC
Confidence            788887777799999 77722222211111 00111111111356777754321            12245789999999


Q ss_pred             CCeEEEEe
Q 017371          208 SNITTLVA  215 (372)
Q Consensus       208 t~~~~~~~  215 (372)
                      ||+..+..
T Consensus       187 TG~~~W~~  194 (560)
T d1kv9a2         187 TGKLAWRF  194 (560)
T ss_dssp             TCCEEEEE
T ss_pred             CceEEeee
Confidence            99987754

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.94  E-value=0.042  Score=45.70  Aligned_cols=178  Identities=15%  Similarity=0.076  Sum_probs=93.5

Q ss_pred             CCccEEEcCCCcEEEEecCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCC-EEEEeCCCc-EEEEcCCC-cEEEeee
Q 017371           80 HPEDASMDKNGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNANG-LHKVSEDG-VENFLSY  154 (372)
Q Consensus        80 ~p~~i~~d~~G~l~v~~~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~-l~v~~~~~g-v~~~~~~g-~~~l~~~  154 (372)
                      .|..++..++|.+++...++.+..++  +++.......  ... ..++.++++ +.++....+ +..++... ...... 
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~-  157 (287)
T d1pgua2          82 QPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRL--NSP-GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDL-  157 (287)
T ss_dssp             CEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEEC--SSC-EEEEEECSSEEEEEETTTSCEEEEETTEEEEEEEC-
T ss_pred             ceeeeeeccCCceEEEeecccceeeeccceeeeeeccc--cce-eeeeeccCcceeeeccccceeeeeeccccceeeee-
Confidence            57778888888887777777788887  4443322222  122 334444554 445544333 55555322 111111 


Q ss_pred             cCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEe-CC-ccCcceEEEecC---
Q 017371          155 VNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DG-FYFANGVALSRD---  229 (372)
Q Consensus       155 ~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~-~~-~~~~~gi~~~~d---  229 (372)
                       .......+..++++++|...++-                 ..++.|..+|..+++..... .. ....+.++++|+   
T Consensus       158 -~~~~~~~v~~~~~s~~~~~l~~g-----------------~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~  219 (287)
T d1pgua2         158 -KTPLRAKPSYISISPSETYIAAG-----------------DVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKG  219 (287)
T ss_dssp             -SSCCSSCEEEEEECTTSSEEEEE-----------------ETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC--
T ss_pred             -eeccCCceeEEEeccCccccccc-----------------cccccccceeecccccccccccccccccceeeecccccc
Confidence             11111245678999999755542                 24678888998776654321 11 111234556554   


Q ss_pred             -------CCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCCEEEEE
Q 017371          230 -------EDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAI  282 (372)
Q Consensus       230 -------g~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~lwva~  282 (372)
                             +. ++++...+..|+.+++....  ..........+....++..+++.+..+.
T Consensus       220 ~~~~~~~~~-~l~sgs~D~~i~iw~~~~~~--~~~~~~~~h~~~V~~v~~~~~~~l~s~g  276 (287)
T d1pgua2         220 ANEEEIEED-LVATGSLDTNIFIYSVKRPM--KIIKALNAHKDGVNNLLWETPSTLVSSG  276 (287)
T ss_dssp             ----CCSCC-EEEEEETTSCEEEEESSCTT--CCEEETTSSTTCEEEEEEEETTEEEEEE
T ss_pred             cccccCCCC-eeEeecCCCeEEEEECCCCC--eEEEEeCCCCCCeEEEEECCCCEEEEEE
Confidence                   34 45555556678888875321  1111122223335667777777654433

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.89  E-value=0.044  Score=45.32  Aligned_cols=79  Identities=11%  Similarity=0.037  Sum_probs=40.1

Q ss_pred             CeEEEEe--CCceEEEEecCCCcccCeEEcCCCC-EE-EEeCC-C----cEEEEc-CCC-cEEEeeecC--Ccccccccc
Q 017371           99 GWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LI-ICDNA-N----GLHKVS-EDG-VENFLSYVN--GSKLRFAND  165 (372)
Q Consensus        99 g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~-l~-v~~~~-~----gv~~~~-~~g-~~~l~~~~~--~~~~~~~~~  165 (372)
                      |.|+.++  +|+.+.+....+... +.++.|||+ |. +.... .    .++.++ ..| .+.+.....  .........
T Consensus        21 ~dl~~~d~~~g~~~~Lt~~~~~~~-~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~   99 (281)
T d1k32a2          21 DDLWEHDLKSGSTRKIVSNLGVIN-NARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDV   99 (281)
T ss_dssp             TEEEEEETTTCCEEEEECSSSEEE-EEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEE
T ss_pred             CcEEEEECCCCCEEEEecCCCccc-CEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccc
Confidence            3455555  345555444334445 778899996 33 33211 1    377777 445 444422110  111123456


Q ss_pred             eEEccCCc-EEEEe
Q 017371          166 VVEASDGS-LYFTV  178 (372)
Q Consensus       166 l~~d~dG~-i~vtd  178 (372)
                      .++.+||+ |+++.
T Consensus       100 ~~~spdg~~l~~~~  113 (281)
T d1k32a2         100 AGFDPDGNLIISTD  113 (281)
T ss_dssp             EEECTTCCEEEEEC
T ss_pred             cccCCCCCEEEEEE
Confidence            77888996 55543

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.87  E-value=0.13  Score=48.16  Aligned_cols=132  Identities=14%  Similarity=0.191  Sum_probs=75.9

Q ss_pred             cccCceEecCCCCCC--CccEEEcCCCcEEEEecCCeEEEEe--CCceEEEEecC------------CC-cccCeEEcCC
Q 017371           66 QLQDFIKVGEGSVNH--PEDASMDKNGVIYTATRDGWIKRLQ--DGTWVNWKFID------------SQ-TLVGLTSTKE  128 (372)
Q Consensus        66 ~l~~~~~~~~g~~~~--p~~i~~d~~G~l~v~~~~g~i~~~~--~g~~~~~~~~~------------~~-p~~gl~~d~d  128 (372)
                      .|.-++.+..+...+  ..-+.+  +|.||+++.+++|+.+|  +|+.. |....            .. .. +++.. +
T Consensus        54 ~L~~aW~~~~~~~~~~~stPiv~--~g~vyv~t~~~~v~AlDa~TG~~~-W~~~~~~~~~~~~~~~~~~~~~-g~~~~-~  128 (573)
T d1kb0a2          54 DLGLAWSYNLESTRGVEATPVVV--DGIMYVSASWSVVHAIDTRTGNRI-WTYDPQIDRSTGFKGCCDVVNR-GVALW-K  128 (573)
T ss_dssp             GEEEEEEEECCCCSCCCCCCEEE--TTEEEEECGGGCEEEEETTTTEEE-EEECCCCCGGGGGGSSSCSCCC-CCEEE-T
T ss_pred             cceEEEEEECCCCCCcEECCEEE--CCEEEEECCCCeEEEEeCCCCCeE-EEeCCCCCcccccccccccccc-cceEE-C
Confidence            355556655443222  222554  68999999999999999  67644 33211            01 12 55554 6


Q ss_pred             CCEEEEeCCCcEEEEc-CCCcEEEeeec-CCccc-ccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEe
Q 017371          129 GHLIICDNANGLHKVS-EDGVENFLSYV-NGSKL-RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYD  205 (372)
Q Consensus       129 G~l~v~~~~~gv~~~~-~~g~~~l~~~~-~~~~~-~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d  205 (372)
                      +++|++.....++.+| .+|........ .+... .....--+--++.+++.....            +....|.|+.+|
T Consensus       129 ~~v~~~t~~g~l~alda~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~------------~~~~~G~v~a~D  196 (573)
T d1kb0a2         129 GKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGA------------EYGVRGYITAYD  196 (573)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCT------------TTCCBCEEEEEE
T ss_pred             CcEEEEecccceeeeccccccceecccCccCCcceEEeecceEEEeccEEEeeccc------------cccccceEEEEe
Confidence            7889988777799999 67733322221 11110 011111122367788754431            223467899999


Q ss_pred             CCCCeEEEE
Q 017371          206 PSSNITTLV  214 (372)
Q Consensus       206 ~~t~~~~~~  214 (372)
                      ..||+..+.
T Consensus       197 ~~TG~~~W~  205 (573)
T d1kb0a2         197 AETGERKWR  205 (573)
T ss_dssp             TTTCCEEEE
T ss_pred             cCCccceee
Confidence            999987764

>d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}

class: All beta proteins
fold: 5-bladed beta-propeller
superfamily: Tachylectin-2
family: Tachylectin-2
domain: Tachylectin-2
species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]

Probab=96.80  E-value=0.057  Score=42.43  Aligned_cols=157  Identities=15%  Similarity=0.060  Sum_probs=93.5

Q ss_pred             cccccCceEecCCCCCCCccEEEcCCCcEEEEecCCeEEEEe--C--C-c----eEEEEecC-CCcccCeEEcCCCCEEE
Q 017371           64 ATQLQDFIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQ--D--G-T----WVNWKFID-SQTLVGLTSTKEGHLII  133 (372)
Q Consensus        64 ~~~l~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~g~i~~~~--~--g-~----~~~~~~~~-~~p~~gl~~d~dG~l~v  133 (372)
                      .+.+..+..++.+.+..-..|++.|+|+||... +|.+++=.  .  . .    .+.+-..+ ++-- -|.+||.|-||+
T Consensus        25 dn~~~rA~~lGk~g~~n~~~i~fsP~G~LyaVr-~~~lY~Gp~~s~~nq~wf~~atrIG~ggWn~Fk-flffdP~G~Lya  102 (235)
T d1tl2a_          25 DNWLARATLIGKGGWSNFKFLFLSPGGELYGVL-NDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQ-FLFFDPNGYLYA  102 (235)
T ss_dssp             CCHHHHSEEEESSSCTTCSEEEECTTSCEEEEE-TTEEEEESCCCSTTCCHHHHCEEEECSCGGGCS-EEEECTTSCEEE
T ss_pred             ccccchhhhcCcccccceeEEEECCCCcEEEEE-CCeEEECCCCCcchHHHHHhhhhcccCcccceE-EEEECCCceEEE
Confidence            345667888888778889999999999999886 44677654  1  1 1    12221111 1112 578999999999


Q ss_pred             EeCCCcEEEEc-CCC-cEE-E--eeecCCcccccccceEEccCCcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCC
Q 017371          134 CDNANGLHKVS-EDG-VEN-F--LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS  208 (372)
Q Consensus       134 ~~~~~gv~~~~-~~g-~~~-l--~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t  208 (372)
                      +.. ..|++-. ++. -.. +  +..+....-.....|.+||+|.||--.                   ++++++-.|-+
T Consensus       103 Vt~-~~LYr~~pPtn~~q~W~g~a~~vG~~gw~df~~lFFdP~G~LYaV~-------------------~~~l~k~~pP~  162 (235)
T d1tl2a_         103 VSK-DKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-------------------GQQFYKALPPV  162 (235)
T ss_dssp             EET-TEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-------------------TTEEEEECCCS
T ss_pred             ecC-cceecCCcCcccchhhhhhhhhhccCCcCceeEEEECCCceEEEEE-------------------CCcEEEcCCCC
Confidence            885 4688877 432 111 1  011111111233467899999999853                   23577766543


Q ss_pred             Ce-------EEEEe-CCccCcceEEEecCCCEEEEEeCCCCeEEE
Q 017371          209 NI-------TTLVA-DGFYFANGVALSRDEDYVVVCESWKFRCRK  245 (372)
Q Consensus       209 ~~-------~~~~~-~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~  245 (372)
                      +.       -+.+- .+...+..+.|++||+ |+.+.-  ..+++
T Consensus       163 ~~~d~WL~~st~igr~~w~~~~fi~Fs~dG~-L~~v~~--g~~Y~  204 (235)
T d1tl2a_         163 SNQDNWLARATKIGQGGWDTFKFLFFSSVGT-LFGVQG--GKFYE  204 (235)
T ss_dssp             STTCCHHHHCEEEESSSGGGEEEEEECTTSC-EEEEET--TEEEE
T ss_pred             CCCchhhhhhhhhccCcccCceEEEECCCCc-EEEEeC--CeEEe
Confidence            21       11222 3344556889999998 776632  34554

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.80  E-value=0.099  Score=42.93  Aligned_cols=199  Identities=16%  Similarity=0.149  Sum_probs=99.2

Q ss_pred             cEEEcCCC-cEEEE-e--cCCeEEEEe--CCceEEEEecCCCcccCeEEcCCCCEEEEeCC-Cc---EEEEc-CCC-cEE
Q 017371           83 DASMDKNG-VIYTA-T--RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNA-NG---LHKVS-EDG-VEN  150 (372)
Q Consensus        83 ~i~~d~~G-~l~v~-~--~~g~i~~~~--~g~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~-~g---v~~~~-~~g-~~~  150 (372)
                      +.++.||| .|.+. .  ....++.++  .+..+.+....+... ...++++|..++.... .+   +.... ... ...
T Consensus        43 sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~  121 (269)
T d2hqsa1          43 SPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNG-APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ  121 (269)
T ss_dssp             EEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEE-EEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE
T ss_pred             eeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccc-cceecCCCCeeeEeeecCCccceeeccccccccee
Confidence            45678888 44443 3  233566666  445555555555666 7788898875443221 11   22222 111 111


Q ss_pred             EeeecCCcccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecC
Q 017371          151 FLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRD  229 (372)
Q Consensus       151 l~~~~~~~~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~d  229 (372)
                      ..   ....  .........++. ++++..               ..+...++.++.+++....+...........+++|
T Consensus       122 ~~---~~~~--~~~~~~~~~~~~~~~~~~~---------------~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spd  181 (269)
T d2hqsa1         122 VT---DGRS--NNTEPTWFPDSQNLAFTSD---------------QAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSD  181 (269)
T ss_dssp             CC---CCSS--CEEEEEECTTSSEEEEEEC---------------TTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTT
T ss_pred             ee---eccc--cccccccccccccceeccc---------------ccCCceEeeeecccccceeeecccccccccccccc
Confidence            10   1100  001112223332 222211               11345688888887765554433333345678999


Q ss_pred             CCEEEEEeCCC--CeEEEEEccCCCCcceeeeccCCCCCCceeEEcCCCC-E-EEEEecCchhHHHHhhcchhHHHHHHh
Q 017371          230 EDYVVVCESWK--FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-F-WIAIIKLDARRMKILNSSKLIKHVLAA  305 (372)
Q Consensus       230 g~~l~v~~~~~--~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~G~-l-wva~~~~~~~~~~~~~~~~~~r~~~~~  305 (372)
                      ++.+++....+  ..++.++..+   +..+...  ..+.-....+.+||+ | |++...                     
T Consensus       182 g~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~--~~~~~~~p~~SPDG~~i~f~s~~~---------------------  235 (269)
T d2hqsa1         182 GKFMVMVSSNGGQQHIAKQDLAT---GGVQVLS--STFLDETPSLAPNGTMVIYSSSQG---------------------  235 (269)
T ss_dssp             SSEEEEEEECSSCEEEEEEETTT---CCEEECC--CSSSCEEEEECTTSSEEEEEEEET---------------------
T ss_pred             cceeEEEeecCCceeeeEeeccc---ccceEee--cCccccceEECCCCCEEEEEEcCC---------------------
Confidence            99887765443  2344444433   2222221  222234567899996 3 444332                     


Q ss_pred             cCccccccccCCCceEEEEECCCCcEEEEEECCCC
Q 017371          306 YPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTG  340 (372)
Q Consensus       306 ~p~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~g  340 (372)
                                  ....++.++.+|.....+....|
T Consensus       236 ------------~~~~l~~~~~dg~~~~~lt~~~g  258 (269)
T d2hqsa1         236 ------------MGSVLNLVSTDGRFKARLPATDG  258 (269)
T ss_dssp             ------------TEEEEEEEETTSCCEEECCCSSS
T ss_pred             ------------CCcEEEEEECCCCCEEEEeCCCC
Confidence                        13467788888776655544444

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.79  E-value=0.065  Score=46.90  Aligned_cols=177  Identities=11%  Similarity=0.148  Sum_probs=88.1

Q ss_pred             CCcEEEEe-cCCeEEEEe-CCceEEEEecCCCcccCeE------EcCCC-CEEEEe-CC---Cc--EEEEc-CCC-cEEE
Q 017371           89 NGVIYTAT-RDGWIKRLQ-DGTWVNWKFIDSQTLVGLT------STKEG-HLIICD-NA---NG--LHKVS-EDG-VENF  151 (372)
Q Consensus        89 ~G~l~v~~-~~g~i~~~~-~g~~~~~~~~~~~p~~gl~------~d~dG-~l~v~~-~~---~g--v~~~~-~~g-~~~l  151 (372)
                      +..|.+|+ ..+.|+.|+ +|+...... .++++ .+-      +..++ .+.++. -.   ..  ++.++ ..+ +..+
T Consensus        39 ~~SlI~gTdK~~Gl~vYdL~G~~l~~~~-~Gr~N-NVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~  116 (353)
T d1h6la_          39 QNSKLITTNKKSGLAVYSLEGKMLHSYH-TGKLN-NVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSI  116 (353)
T ss_dssp             GGCEEEEEETTSCCEEEETTCCEEEECC-SSCEE-EEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEEC
T ss_pred             CccEEEEEcCcCCEEEEcCCCcEEEecc-cCCcC-ccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccccc
Confidence            44666666 566688888 776554432 34554 332      22222 133332 21   12  45555 333 4433


Q ss_pred             eeec-C-CcccccccceEE--cc-CCcEEEEeCCCCCCCcccccccccccCCCeEE--EEeC-CCCeEEE----EeCCcc
Q 017371          152 LSYV-N-GSKLRFANDVVE--AS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLL--KYDP-SSNITTL----VADGFY  219 (372)
Q Consensus       152 ~~~~-~-~~~~~~~~~l~~--d~-dG~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~--~~d~-~t~~~~~----~~~~~~  219 (372)
                      .... + ......+.+++.  ++ +|.+|+...                ...|.+.  .+.. ..+.++.    ....-.
T Consensus       117 ~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~----------------~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~  180 (353)
T d1h6la_         117 TDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVT----------------GKEGEFEQYELNADKNGYISGKKVRAFKMNS  180 (353)
T ss_dssp             SCSSSCEECSSSSCCCEEEEECTTTCCEEEEEE----------------CSSSEEEEEEEEECTTSSEEEEEEEEEECSS
T ss_pred             cccccccccccCcceEEEEEecCCCCeEEEEEE----------------cCCceEEEEEEEcCCCCceeeEeeeccCCCC
Confidence            2210 1 011235778887  54 466665321                1334443  3332 2232221    122234


Q ss_pred             CcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeee--c--cCCCCCCceeEE--cCCCC-EEEEEec
Q 017371          220 FANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETF--A--ENLPGAPDNINL--APDGT-FWIAIIK  284 (372)
Q Consensus       220 ~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~--~--~~~~g~p~~i~~--d~~G~-lwva~~~  284 (372)
                      .+.|++++.+.+.||+++- +.+||+|..+-.........  .  .++.+-|.||++  .++|. +||++..
T Consensus       181 q~EGCVvDde~~~LyisEE-~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQ  251 (353)
T d1h6la_         181 QTEGMAADDEYGSLYIAEE-DEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQ  251 (353)
T ss_dssp             CEEEEEEETTTTEEEEEET-TTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEG
T ss_pred             ccceEEEeCCCCcEEEecC-ccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcC
Confidence            5679999999999999996 56899998763321211111  1  124445778875  23332 5555543

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.71  E-value=0.022  Score=51.00  Aligned_cols=107  Identities=9%  Similarity=0.004  Sum_probs=60.7

Q ss_pred             CCC-EEEEeCC-CcEEEEc-CCC-cEEEeeecCCcccccccceEEccCC-cEEEEeCCCCCCC--ccccccccc-ccCCC
Q 017371          128 EGH-LIICDNA-NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLP--HEYCLDILE-GKPHG  199 (372)
Q Consensus       128 dG~-l~v~~~~-~gv~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~d~dG-~i~vtd~~~~~~~--~~~~~~~~~-~~~~g  199 (372)
                      ||+ |||.+.. .+|.+|+ .+- ...+.....   ...+.++....++ +.||...+ +|..  ......+.+ ....+
T Consensus        98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn---~~~~HG~r~~~~p~T~YV~~~~-e~~vP~pndg~~l~d~~~y~~  173 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPN---AKGIHGLRPQKWPRSNYVFCNG-EDETPLVNDGTNMEDVANYVN  173 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSS---CCSEEEEEECCSSBCSEEEEEE-CSCEESSCSSSSTTCGG-EEE
T ss_pred             ceeEEEEEcCCCceEEEEECcceeeeEEEecCC---CCCCceeecccCCCeEEEEccC-ccccccCCCCccccchhhcce
Confidence            675 7888755 5799999 443 322322211   2345667766554 56665432 1110  000000100 11234


Q ss_pred             eEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeC
Q 017371          200 QLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES  238 (372)
Q Consensus       200 ~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~  238 (372)
                      .+..+|.++.++..-...-..+..+++++||+++|++..
T Consensus       174 ~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~Tsy  212 (459)
T d1fwxa2         174 VFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSY  212 (459)
T ss_dssp             EEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEES
T ss_pred             EEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEec
Confidence            567899988877664444456789999999999999763

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.39  E-value=0.19  Score=41.31  Aligned_cols=138  Identities=11%  Similarity=0.052  Sum_probs=73.2

Q ss_pred             ccEEEcCCCcEEEEecCCeEEEEeCCceEEEEecCCCcccCeEEcCCCCEEEEeCCCcEEEEc-CCC--cEEEeeecCCc
Q 017371           82 EDASMDKNGVIYTATRDGWIKRLQDGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG--VENFLSYVNGS  158 (372)
Q Consensus        82 ~~i~~d~~G~l~v~~~~g~i~~~~~g~~~~~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~-~~g--~~~l~~~~~~~  158 (372)
                      .++++.+++.++.+..++.|..++-.   . ......|. .+.+.+++.+++.....++..++ .++  ...+...    
T Consensus        50 ~~~~~~~~~~~~s~s~D~~v~~w~~~---~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  120 (287)
T d1pgua2          50 VSLDNSKAQEYSSISWDDTLKVNGIT---K-HEFGSQPK-VASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLN----  120 (287)
T ss_dssp             EEEECCSTTCCEEEETTTEEEETTEE---E-EECSSCEE-EEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECS----
T ss_pred             EEEEecCCCeEEEEeecccccccccc---c-ccccccee-eeeeccCCceEEEeecccceeeeccceeeeeecccc----
Confidence            34555555555555556655443300   0 11223455 77778888877777667777777 455  3322111    


Q ss_pred             ccccccceEEccCCc-EEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeEEEEeC-Cc-cCcceEEEecCCCEEEE
Q 017371          159 KLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-GF-YFANGVALSRDEDYVVV  235 (372)
Q Consensus       159 ~~~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~-~~-~~~~gi~~~~dg~~l~v  235 (372)
                          ....++.+++. +.++..                 ..+.+..++..+.+...... .. .....++++|++++|++
T Consensus       121 ----~~~~~~~~~~~~~~v~~~-----------------~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  179 (287)
T d1pgua2         121 ----SPGSAVSLSQNYVAVGLE-----------------EGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAA  179 (287)
T ss_dssp             ----SCEEEEEECSSEEEEEET-----------------TTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEE
T ss_pred             ----ceeeeeeccCcceeeecc-----------------ccceeeeeeccccceeeeeeeccCCceeEEEeccCcccccc
Confidence                11234455554 334321                 22346666654333222221 12 22356889999997777


Q ss_pred             EeCCCCeEEEEEccC
Q 017371          236 CESWKFRCRKYWLKG  250 (372)
Q Consensus       236 ~~~~~~~i~~~~~~g  250 (372)
                      +.. ++.|..|+...
T Consensus       180 g~~-dg~i~i~d~~~  193 (287)
T d1pgua2         180 GDV-MGKILLYDLQS  193 (287)
T ss_dssp             EET-TSCEEEEETTT
T ss_pred             ccc-cccccceeecc
Confidence            664 55788888754

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.02  E-value=0.32  Score=40.29  Aligned_cols=139  Identities=14%  Similarity=0.079  Sum_probs=76.0

Q ss_pred             cCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccCCCCCCceeEEcCC
Q 017371          196 KPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPD  275 (372)
Q Consensus       196 ~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~g~p~~i~~d~~  275 (372)
                      ..++.|..+|..+++......... ..-.+++++++.++ +.+.++.|..++....+.  ...+.........-.++..+
T Consensus       194 ~~dg~i~~~d~~~~~~~~~~~~~~-~~v~~~~~~~~~l~-s~s~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~  269 (342)
T d2ovrb2         194 SLDTSIRVWDVETGNCIHTLTGHQ-SLTSGMELKDNILV-SGNADSTVKIWDIKTGQC--LQTLQGPNKHQSAVTCLQFN  269 (342)
T ss_dssp             ETTSCEEEEETTTCCEEEEECCCC-SCEEEEEEETTEEE-EEETTSCEEEEETTTCCE--EEEECSTTSCSSCEEEEEEC
T ss_pred             eCCCeEEEeecccceeeeEecccc-cceeEEecCCCEEE-EEcCCCEEEEEecccccc--cccccccceeeeceeecccC
Confidence            356778888887666544333222 22234556667554 444566788888764321  12222111111122344556


Q ss_pred             CCEEEEEecCchhHHHHhhcchhHHHHHHhcCccccccccCCCceEEEEEC-CCCcEEEEEECCC-CCeeccceeeEEEC
Q 017371          276 GTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVA-EDGTIIRNLVDPT-GQLMSFVTSGLQVD  353 (372)
Q Consensus       276 G~lwva~~~~~~~~~~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~v~~~~-~~g~~~~~~~~~~-g~~~~~~t~~~~~~  353 (372)
                      +++.++...                                  .+.|..+| .+|+.++.+.... +.....++++....
T Consensus       270 ~~~~~s~s~----------------------------------Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~  315 (342)
T d2ovrb2         270 KNFVITSSD----------------------------------DGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN  315 (342)
T ss_dssp             SSEEEEEET----------------------------------TSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECS
T ss_pred             CCeeEEEcC----------------------------------CCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECC
Confidence            677766655                                  56777787 4688888775422 22234577788765


Q ss_pred             CEEEEE--eCCC---CeEEEEeCC
Q 017371          354 NHLYVI--SLTS---NFIGKVQLS  372 (372)
Q Consensus       354 g~L~ig--s~~~---~~i~~~~~~  372 (372)
                      +..+++  +..+   .+|.++|+|
T Consensus       316 ~~~~la~g~~dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         316 TKLVCAVGSRNGTEETKLLVLDFD  339 (342)
T ss_dssp             SEEEEEEECSSSSSCCEEEEEECC
T ss_pred             CCCEEEEEeCCCCCeeEEEEEeCC
Confidence            444433  3332   358888765

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.01  E-value=0.52  Score=42.57  Aligned_cols=149  Identities=9%  Similarity=0.037  Sum_probs=77.1

Q ss_pred             eEEcCCCCEEEEeCCC-----cEEEEc-CCC-cEEEeeecCCccc-ccccceEEccCCc-EEEEeCCCCCCCcccccccc
Q 017371          123 LTSTKEGHLIICDNAN-----GLHKVS-EDG-VENFLSYVNGSKL-RFANDVVEASDGS-LYFTVSSSKYLPHEYCLDIL  193 (372)
Q Consensus       123 l~~d~dG~l~v~~~~~-----gv~~~~-~~g-~~~l~~~~~~~~~-~~~~~l~~d~dG~-i~vtd~~~~~~~~~~~~~~~  193 (372)
                      +.+.+++++++....+     .+..+| .+| .+.+.......=. .......+.+||+ +++-..             .
T Consensus       260 ~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~-------------s  326 (465)
T d1xfda1         260 VKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRA-------------I  326 (465)
T ss_dssp             EEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEE-------------E
T ss_pred             eEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEe-------------e
Confidence            4566788877764332     366677 667 5444332211000 0112456778885 322111             0


Q ss_pred             cccCCCeEEEEeC-------CCCeEEEEeCCccC-cceEEEecCCCEEEEEeCC----CCeEEEEEccCCCCcceeeecc
Q 017371          194 EGKPHGQLLKYDP-------SSNITTLVADGFYF-ANGVALSRDEDYVVVCESW----KFRCRKYWLKGERKGKLETFAE  261 (372)
Q Consensus       194 ~~~~~g~v~~~d~-------~t~~~~~~~~~~~~-~~gi~~~~dg~~l~v~~~~----~~~i~~~~~~g~~~~~~~~~~~  261 (372)
                      +..+.+.++.++.       ..+..+.+-.+-.. ..-++++++++.+|++.+.    ...|+++.++|....+.-.-..
T Consensus       327 e~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~  406 (465)
T d1xfda1         327 PQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDL  406 (465)
T ss_dssp             CCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTS
T ss_pred             eecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeecccc
Confidence            1124456776642       21222222222111 2235689999999998653    3459999988753322111000


Q ss_pred             CCCCCCceeEEcCCCCEEEEEec
Q 017371          262 NLPGAPDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       262 ~~~g~p~~i~~d~~G~lwva~~~  284 (372)
                      ...+.-..+.++++|.++|-...
T Consensus       407 ~~~~~~~~~~~S~~~~y~v~~~s  429 (465)
T d1xfda1         407 VENCTYFSASFSHSMDFFLLKCE  429 (465)
T ss_dssp             SSSCCCCEEEECTTSSEEEEECC
T ss_pred             CCCCCEEEEEECCCCCEEEEEee
Confidence            11123457889999999987765

>d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}

class: All beta proteins
fold: 5-bladed beta-propeller
superfamily: Tachylectin-2
family: Tachylectin-2
domain: Tachylectin-2
species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]

Probab=95.67  E-value=0.017  Score=45.45  Aligned_cols=109  Identities=15%  Similarity=0.032  Sum_probs=68.9

Q ss_pred             cccCceEecCCCCCCCccEEEcCCCcEEEEecCCeEEEEe--CCce-------EEEEe-cCCCcccCeEEcCCCCEEEEe
Q 017371           66 QLQDFIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQ--DGTW-------VNWKF-IDSQTLVGLTSTKEGHLIICD  135 (372)
Q Consensus        66 ~l~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~g~i~~~~--~g~~-------~~~~~-~~~~p~~gl~~d~dG~l~v~~  135 (372)
                      ....+.+|+.|.-..=.-+.+||+|-||..+ +|.|+|-.  +.+-       ..+-. ..+.-. -|.|||+|.||-..
T Consensus        74 wf~~atrIG~ggWn~FkflffdP~G~LyaVt-~~~LYr~~pPtn~~q~W~g~a~~vG~~gw~df~-~lFFdP~G~LYaV~  151 (235)
T d1tl2a_          74 WMGRAKKIGNGGWNQFQFLFFDPNGYLYAVS-KDKLYKASPPQSDTDNWIARATEVGSGGWSGFK-FLFFHPNGYLYAVH  151 (235)
T ss_dssp             HHHHCEEEECSCGGGCSEEEECTTSCEEEEE-TTEEEEESCCCSTTCCHHHHSEEEECSSGGGEE-EEEECTTSCEEEEE
T ss_pred             HHHhhhhcccCcccceEEEEECCCceEEEec-CcceecCCcCcccchhhhhhhhhhccCCcCcee-EEEECCCceEEEEE
Confidence            3467888888765556679999999999988 47899876  3322       22211 112233 68899999999886


Q ss_pred             CCCcEEEEc-CCC--cEEEe--eecCCcccccccceEEccCCcEEEE
Q 017371          136 NANGLHKVS-EDG--VENFL--SYVNGSKLRFANDVVEASDGSLYFT  177 (372)
Q Consensus       136 ~~~gv~~~~-~~g--~~~l~--~~~~~~~~~~~~~l~~d~dG~i~vt  177 (372)
                      .. .+++-. +.+  -..+.  +.+....-..+..|.+.++|+||-.
T Consensus       152 ~~-~l~k~~pP~~~~d~WL~~st~igr~~w~~~~fi~Fs~dG~L~~v  197 (235)
T d1tl2a_         152 GQ-QFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGV  197 (235)
T ss_dssp             TT-EEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEE
T ss_pred             CC-cEEEcCCCCCCCchhhhhhhhhccCcccCceEEEECCCCcEEEE
Confidence            54 588776 332  11111  1111111234457899999999974

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=95.65  E-value=0.026  Score=46.89  Aligned_cols=54  Identities=13%  Similarity=-0.001  Sum_probs=39.0

Q ss_pred             CCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeC--CC---CeEEEEEccCC
Q 017371          198 HGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES--WK---FRCRKYWLKGE  251 (372)
Q Consensus       198 ~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~--~~---~~i~~~~~~g~  251 (372)
                      .+.||.+|.++++.+.+..........+|+|||+++.++..  ..   ..|+.++..+.
T Consensus        20 ~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g   78 (281)
T d1k32a2          20 CDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENG   78 (281)
T ss_dssp             TTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTT
T ss_pred             CCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCC
Confidence            35688888888888877665555567889999998887642  11   24888887665

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.53  E-value=0.087  Score=47.56  Aligned_cols=117  Identities=12%  Similarity=-0.070  Sum_probs=70.2

Q ss_pred             CeEEcCCCCEEEEeCCCcEEEEc-CCC-cEEEeeecCC-cccccccceEEccCCc-EEE-EeCCCCCCCccccccccccc
Q 017371          122 GLTSTKEGHLIICDNANGLHKVS-EDG-VENFLSYVNG-SKLRFANDVVEASDGS-LYF-TVSSSKYLPHEYCLDILEGK  196 (372)
Q Consensus       122 gl~~d~dG~l~v~~~~~gv~~~~-~~g-~~~l~~~~~~-~~~~~~~~l~~d~dG~-i~v-td~~~~~~~~~~~~~~~~~~  196 (372)
                      .+.+-+++.++..+ +.+++.++ .+| .+.+.....- .....+.++.+.|||+ |.+ ++...          +....
T Consensus        21 ~~~W~~d~~~~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~----------~~r~s   89 (470)
T d2bgra1          21 SLRWISDHEYLYKQ-ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVK----------QWRHS   89 (470)
T ss_dssp             CCEECSSSEEEEES-SSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEE----------CSSSC
T ss_pred             CCEeCCCCEEEEEc-CCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcc----------eeeec
Confidence            56667777765554 45688888 666 4444432111 1112456888999997 333 22110          11122


Q ss_pred             CCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCC
Q 017371          197 PHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGE  251 (372)
Q Consensus       197 ~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~  251 (372)
                      ..+.++.+|.++++...+...-.....+.|+|||+.+.+..  ++.++.++..+.
T Consensus        90 ~~~~~~l~d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~~--~~~l~~~~~~~g  142 (470)
T d2bgra1          90 YTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVW--NNDIYVKIEPNL  142 (470)
T ss_dssp             EEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEE--TTEEEEESSTTS
T ss_pred             cCceEEEEECCCCcccccccCCccccccccccCcceeeEee--cccceEEECCCC
Confidence            35678999999888655433323334577999999877764  446888777654

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.42  E-value=0.1  Score=45.76  Aligned_cols=116  Identities=12%  Similarity=0.108  Sum_probs=67.9

Q ss_pred             cccCeEEcCCCCEEEEeCCCcEEEEc-CCC--cEEEeee--cCCcccccccceEEccCCcEEEEeCCCCCCCcccccccc
Q 017371          119 TLVGLTSTKEGHLIICDNANGLHKVS-EDG--VENFLSY--VNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDIL  193 (372)
Q Consensus       119 p~~gl~~d~dG~l~v~~~~~gv~~~~-~~g--~~~l~~~--~~~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~  193 (372)
                      .. .+++.++|.|..+..+..|..++ .++  ...+...  ..+ ....++.+++.|||++.++-+.             
T Consensus       187 ~~-~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~-h~~~V~~l~~spdg~~l~sgs~-------------  251 (393)
T d1sq9a_         187 AT-SVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMIN-NSNSIRSVKFSPQGSLLAIAHD-------------  251 (393)
T ss_dssp             CC-EEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---C-CCCCEEEEEECSSTTEEEEEEE-------------
T ss_pred             EE-EEEECCCCEEEEEeCCCcEEEEeeccccccccccccccccc-ccceEEEcccccccceeeeecC-------------
Confidence            34 78888998655554444477777 555  3322211  111 1135678999999998776321             


Q ss_pred             cccCCCeEEEEeCCCCeEEEEeCC--------------ccCcceEEEecCCCEEEEEeCCCCeEEEEEccCC
Q 017371          194 EGKPHGQLLKYDPSSNITTLVADG--------------FYFANGVALSRDEDYVVVCESWKFRCRKYWLKGE  251 (372)
Q Consensus       194 ~~~~~g~v~~~d~~t~~~~~~~~~--------------~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~  251 (372)
                       ....+.+..+|.++++.......              -..-+.++|+||++. +++...+..|..++++..
T Consensus       252 -D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~-l~S~s~D~~v~vWd~~~g  321 (393)
T d1sq9a_         252 -SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGET-LCSAGWDGKLRFWDVKTK  321 (393)
T ss_dssp             -ETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSE-EEEEETTSEEEEEETTTT
T ss_pred             -CCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCe-eEEECCCCEEEEEECCCC
Confidence             01123466678777665443321              011256899999984 455556777888887643

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.94  E-value=1.4  Score=40.70  Aligned_cols=44  Identities=23%  Similarity=0.261  Sum_probs=30.0

Q ss_pred             CCCceEEEEECC-CCcEEEEEECCCCCeeccceeeEEECCEEEEEeC
Q 017371          316 LGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISL  361 (372)
Q Consensus       316 ~~~~~~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~igs~  361 (372)
                      .+..+.+.+||. +|+++..+..+.+.....++  .+.+|+.||+-.
T Consensus       481 G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~t--y~~dGkqYi~v~  525 (571)
T d2ad6a1         481 ATLDGYLKALDNKDGKELWNFKMPSGGIGSPMT--YSFKGKQYIGSM  525 (571)
T ss_dssp             ECTTSEEEEEETTTCCEEEEEECSSCCCSCCEE--EEETTEEEEEEE
T ss_pred             ECCCCeEEEEECCCCcEEEEEECCCCceecceE--EEECCEEEEEEE
Confidence            444689999995 59999999988654222221  245889998553

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=94.65  E-value=1.7  Score=40.10  Aligned_cols=42  Identities=10%  Similarity=0.206  Sum_probs=28.4

Q ss_pred             CCCceEEEEEC-CCCcEEEEEECCCCCeeccceeeEEECCEEEEE
Q 017371          316 LGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVI  359 (372)
Q Consensus       316 ~~~~~~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~ig  359 (372)
                      .+..+.+.+|| .+|+++..+..+.+.. ..+. ..+.+|+-||.
T Consensus       475 G~~dg~l~A~Da~tGe~LW~~~l~~~~~-~~P~-ty~~dGkqyv~  517 (560)
T d1kv9a2         475 GTAAGQMHAYSADKGEALWQFEAQSGIV-AAPM-TFELAGRQYVA  517 (560)
T ss_dssp             ECTTSEEEEEETTTCCEEEEEECSSCCC-SCCE-EEEETTEEEEE
T ss_pred             ECCCCcEEEEECCCCcEeEEEECCCCcc-ccCE-EEEECCEEEEE
Confidence            34467899999 4699999999987642 2222 22457777765

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.40  E-value=1  Score=36.75  Aligned_cols=66  Identities=12%  Similarity=0.025  Sum_probs=38.6

Q ss_pred             CCCccEEEcCCCc-EEEEecCCeEEEEe--CC-ceEEEEe--cCCCcccCeEEcCCC-CEEEE-eCCCcEEEEc
Q 017371           79 NHPEDASMDKNGV-IYTATRDGWIKRLQ--DG-TWVNWKF--IDSQTLVGLTSTKEG-HLIIC-DNANGLHKVS  144 (372)
Q Consensus        79 ~~p~~i~~d~~G~-l~v~~~~g~i~~~~--~g-~~~~~~~--~~~~p~~gl~~d~dG-~l~v~-~~~~gv~~~~  144 (372)
                      .+-.+|++.++|. |.+++.||.|..|+  .+ ....+..  ....+...+++.+++ .+.++ ....-+..++
T Consensus        12 d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~   85 (342)
T d1yfqa_          12 DYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD   85 (342)
T ss_dssp             SCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred             CCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeee
Confidence            3456799998885 55666899998888  32 2222221  123333388887665 44443 3334466666

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=93.92  E-value=1.7  Score=37.42  Aligned_cols=83  Identities=13%  Similarity=0.259  Sum_probs=48.0

Q ss_pred             eEEEEeCCCCeEEEEe-------CCccCcceEEE--ecCCCEEE-EEeCCCCeEEEEEccCCCCc---c--eeeeccCCC
Q 017371          200 QLLKYDPSSNITTLVA-------DGFYFANGVAL--SRDEDYVV-VCESWKFRCRKYWLKGERKG---K--LETFAENLP  264 (372)
Q Consensus       200 ~v~~~d~~t~~~~~~~-------~~~~~~~gi~~--~~dg~~l~-v~~~~~~~i~~~~~~g~~~~---~--~~~~~~~~~  264 (372)
                      .+|.+|+..+....+.       ..+..+.|+|+  +++.+.+| +......++..|.+.....+   .  ...|  ..+
T Consensus       102 ~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f--~~~  179 (353)
T d1h6la_         102 EIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAF--KMN  179 (353)
T ss_dssp             EEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEE--ECS
T ss_pred             EEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeecc--CCC
Confidence            3677777655554432       23445789998  55443233 33334567877776422211   1  1222  245


Q ss_pred             CCCceeEEcCC-CCEEEEEec
Q 017371          265 GAPDNINLAPD-GTFWIAIIK  284 (372)
Q Consensus       265 g~p~~i~~d~~-G~lwva~~~  284 (372)
                      ..+.|+.+|.+ +.|||+.-.
T Consensus       180 ~q~EGCVvDde~~~LyisEE~  200 (353)
T d1h6la_         180 SQTEGMAADDEYGSLYIAEED  200 (353)
T ss_dssp             SCEEEEEEETTTTEEEEEETT
T ss_pred             CccceEEEeCCCCcEEEecCc
Confidence            56789999876 689999865

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.42  E-value=1.6  Score=35.51  Aligned_cols=25  Identities=24%  Similarity=0.214  Sum_probs=17.5

Q ss_pred             CccEEEcCCC--cEEEEecCCeEEEEe
Q 017371           81 PEDASMDKNG--VIYTATRDGWIKRLQ  105 (372)
Q Consensus        81 p~~i~~d~~G--~l~v~~~~g~i~~~~  105 (372)
                      ..++++.+++  .|+.++.+|.|..++
T Consensus        59 V~~v~f~~~~~~~l~sg~~d~~v~~w~   85 (342)
T d1yfqa_          59 LLCCNFIDNTDLQIYVGTVQGEILKVD   85 (342)
T ss_dssp             EEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred             EEEEEEeCCCCCEEEEcccccceeeee
Confidence            4567776543  455666889898888

>d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase
family: Oligoxyloglucan reducing end-specific cellobiohydrolase
domain: Oligoxyloglucan reducing end-specific cellobiohydrolase
species: Yeast (Geotrichum sp. M128) [TaxId: 203496]

Probab=92.58  E-value=2.9  Score=36.47  Aligned_cols=148  Identities=9%  Similarity=0.041  Sum_probs=79.5

Q ss_pred             CCCccEEEcCC--CcEEEEecCCeEEEEe-CC-ceEEEEec-------CCCcccCeEEcCC--CCEEEEeCC------Cc
Q 017371           79 NHPEDASMDKN--GVIYTATRDGWIKRLQ-DG-TWVNWKFI-------DSQTLVGLTSTKE--GHLIICDNA------NG  139 (372)
Q Consensus        79 ~~p~~i~~d~~--G~l~v~~~~g~i~~~~-~g-~~~~~~~~-------~~~p~~gl~~d~d--G~l~v~~~~------~g  139 (372)
                      -...+|+++|.  ..+|++...|.|+|-. .| .++.+...       ..... .|++||.  ..+|++...      .+
T Consensus        12 g~~~~i~~~P~~~~~~ya~~~~gGv~~S~dgG~tW~~~~~~~~~~~~~~~~~~-~iavdp~np~~vy~~tg~~~~~~~~g   90 (427)
T d2ebsa1          12 GYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTE-SIALDPNNPDRLYLAQGRYVGDEWAA   90 (427)
T ss_dssp             SCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEE-EEEEETTEEEEEEEEECSCTTSSCCE
T ss_pred             CcEEEEEECCCCCCEEEEEecCCCEEEEECCCCceEECCCCCCCCCcccccEe-EEEECCCCCCEEEEEeccccCCcCcc
Confidence            35678999864  3899998778899887 34 34443211       11233 6889876  468887532      34


Q ss_pred             EEEEcCCC--cEEEeeecCC----cccccccceEEccC--CcEEEEeCCCCCCCcccccccccccCCCeEEEEeCCCCeE
Q 017371          140 LHKVSEDG--VENFLSYVNG----SKLRFANDVVEASD--GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT  211 (372)
Q Consensus       140 v~~~~~~g--~~~l~~~~~~----~~~~~~~~l~~d~d--G~i~vtd~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~  211 (372)
                      +++=...|  .+.+......    ........|+++|.  +.||++.                  ..++|++=.-.....
T Consensus        91 i~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~~------------------~~~gl~~S~D~G~tW  152 (427)
T d2ebsa1          91 FYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGT------------------RTEGIWKSSDRAKTW  152 (427)
T ss_dssp             EEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEEC------------------SSSCEEEESSTTSSC
T ss_pred             EEEeCCCCccceeecCCcccCccccCccceeEEEECCCccCcccccc------------------cccceeeecCCCcee
Confidence            55544444  4444322111    11123346888875  4688753                  234577644332333


Q ss_pred             EEEeCC---ccC---cceEEEecC-CCEEEEEeCCCCeEEE
Q 017371          212 TLVADG---FYF---ANGVALSRD-EDYVVVCESWKFRCRK  245 (372)
Q Consensus       212 ~~~~~~---~~~---~~gi~~~~d-g~~l~v~~~~~~~i~~  245 (372)
                      +.+...   ...   ...+.++|. .+.+|++.....+|++
T Consensus       153 ~~~~~~~~~~~~~~~~~~i~~~p~~~~~~y~~~~~~~giy~  193 (427)
T d2ebsa1         153 TNVTSIPDAFTNGIGYTSVIFDPERNGTIYASATAPQGMYV  193 (427)
T ss_dssp             EECTTSSCCCCSSSCEEEEEECTTSTTCEEEEESSTTCEEE
T ss_pred             eecccCcccccCCccceEEEecccccceeeeeeeeccccee
Confidence            332211   111   123566664 4567777666666765

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=92.55  E-value=4  Score=37.72  Aligned_cols=130  Identities=19%  Similarity=0.192  Sum_probs=73.1

Q ss_pred             cccCceEecCCCCC--CCccEEEcCCCcEEEEec-CCeEEEEe---CCceEEEEecC------------CC-cccCeEEc
Q 017371           66 QLQDFIKVGEGSVN--HPEDASMDKNGVIYTATR-DGWIKRLQ---DGTWVNWKFID------------SQ-TLVGLTST  126 (372)
Q Consensus        66 ~l~~~~~~~~g~~~--~p~~i~~d~~G~l~v~~~-~g~i~~~~---~g~~~~~~~~~------------~~-p~~gl~~d  126 (372)
                      .|.-++.+..+...  ...-|.+  +|.||+++. .+.++.++   +|+.. |....            +. -. |+++-
T Consensus        39 ~L~~aW~~~~~~~~~~~~tPiv~--~g~ly~~t~~~~~v~a~d~~~tG~~~-W~~~~~~~~~~~~~~~~~~~~R-Gv~~~  114 (596)
T d1w6sa_          39 QLRPAWTFSTGLLNGHEGAPLVV--DGKMYIHTSFPNNTFALGLDDPGTIL-WQDKPKQNPAARAVACCDLVNR-GLAYW  114 (596)
T ss_dssp             GEEEEEEEECSCCSCCCSCCEEE--TTEEEEECSTTTCEEEEETTCTTSEE-EEECCCCCGGGGGGCSSCSCCC-CCEEE
T ss_pred             hceEEEEEECCCCCCceeCCEEE--CCEEEEeeCCCCcEEEEeCCCCCCEE-EEecCCCCcccccccccccccc-eeEEe
Confidence            35556666554222  2334555  589999874 68899998   35543 33211            01 13 66664


Q ss_pred             CCC-----CEEEEeCCCcEEEEc-CCCcEEEeeecC----CcccccccceEEccCCcEEEEeCCCCCCCccccccccccc
Q 017371          127 KEG-----HLIICDNANGLHKVS-EDGVENFLSYVN----GSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGK  196 (372)
Q Consensus       127 ~dG-----~l~v~~~~~gv~~~~-~~g~~~l~~~~~----~~~~~~~~~l~~d~dG~i~vtd~~~~~~~~~~~~~~~~~~  196 (372)
                      ++.     ++|+++....|+.+| ++|.........    +.....+  -.+ -++.|++...+.            +..
T Consensus       115 ~~~~~~~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~--P~v-~~~~vivg~~~~------------e~~  179 (596)
T d1w6sa_         115 PGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIA--PYV-VKDKVIIGSSGA------------ELG  179 (596)
T ss_dssp             CCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSC--CEE-ETTEEEECCBCG------------GGT
T ss_pred             cCCCCCceEEEEEeCCCCeEeeccccCceeccccccccccccccccC--CcE-ECCeEEEeeccc------------ccc
Confidence            321     478887666799999 778222222111    1111111  111 367888865431            223


Q ss_pred             CCCeEEEEeCCCCeEEEE
Q 017371          197 PHGQLLKYDPSSNITTLV  214 (372)
Q Consensus       197 ~~g~v~~~d~~t~~~~~~  214 (372)
                      ..|.|..||..||+..+.
T Consensus       180 ~~G~v~A~Da~TG~~~W~  197 (596)
T d1w6sa_         180 VRGYLTAYDVKTGEQVWR  197 (596)
T ss_dssp             CCCEEEEEETTTCCEEEE
T ss_pred             ccCceEEEECCCCcEEEE
Confidence            568999999999998774

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.18  E-value=2.3  Score=34.04  Aligned_cols=123  Identities=15%  Similarity=0.060  Sum_probs=60.2

Q ss_pred             eEEEEecCCCcccCeEEcCCCC-EEEEeCCC---cEEEEcC-CC-cEEEeeecCCcccccccceEEccCCcEEEEeCCCC
Q 017371          109 WVNWKFIDSQTLVGLTSTKEGH-LIICDNAN---GLHKVSE-DG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSK  182 (372)
Q Consensus       109 ~~~~~~~~~~p~~gl~~d~dG~-l~v~~~~~---gv~~~~~-~g-~~~l~~~~~~~~~~~~~~l~~d~dG~i~vtd~~~~  182 (372)
                      .+.+........ ..++.|||+ |.++....   .++.++. .+ .+.+... .+    ......+.++|..++....  
T Consensus        31 ~~~l~~~~~~~~-sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~spdg~~i~~~~~--  102 (269)
T d2hqsa1          31 QFVVHRSPQPLM-SPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF-PR----HNGAPAFSPDGSKLAFALS--  102 (269)
T ss_dssp             CEEEEEESSCEE-EEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECC-SS----CEEEEEECTTSSEEEEEEC--
T ss_pred             cEEEecCCCcee-eeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeee-ec----ccccceecCCCCeeeEeee--
Confidence            333333333334 678999996 43332222   3666663 34 4433322 11    2235567888865443221  


Q ss_pred             CCCcccccccccccCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCC--CCeEEEEEccCC
Q 017371          183 YLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW--KFRCRKYWLKGE  251 (372)
Q Consensus       183 ~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~--~~~i~~~~~~g~  251 (372)
                                  ......+..+.....................++.+++.++++...  ...|+.+++++.
T Consensus       103 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~  161 (269)
T d2hqsa1         103 ------------KTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGG  161 (269)
T ss_dssp             ------------TTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS
T ss_pred             ------------cCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccc
Confidence                        112223444444333333333333333344567777767666543  346888877654

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.13  E-value=2.5  Score=34.53  Aligned_cols=53  Identities=9%  Similarity=0.078  Sum_probs=34.8

Q ss_pred             CCCeEEEEeCCCCeEEEEeCC-ccCcceEEEecCCCEEEEEeCCCCeEEEEEccC
Q 017371          197 PHGQLLKYDPSSNITTLVADG-FYFANGVALSRDEDYVVVCESWKFRCRKYWLKG  250 (372)
Q Consensus       197 ~~g~v~~~d~~t~~~~~~~~~-~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g  250 (372)
                      .++.+..+|..+++......+ ......+.++++++.++... .++.|..++...
T Consensus       179 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~i~i~d~~~  232 (355)
T d1nexb2         179 YDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISAS-MDTTIRIWDLEN  232 (355)
T ss_dssp             TTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEE-TTSCEEEEETTT
T ss_pred             ccceeeeeecccccceeeeeccccccccccccccceeeeccc-ccceEEeeeccc
Confidence            456788888877765544433 23345677899998666655 456688887754

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.78  E-value=0.9  Score=40.39  Aligned_cols=86  Identities=10%  Similarity=0.112  Sum_probs=53.0

Q ss_pred             cCCCeEEEEeCCCCeEEEEeCCccCcceEEEecCCCEEEEEeCCC------CeEEEEEccCCCCcceeeeccCC---CCC
Q 017371          196 KPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK------FRCRKYWLKGERKGKLETFAENL---PGA  266 (372)
Q Consensus       196 ~~~g~v~~~d~~t~~~~~~~~~~~~~~gi~~~~dg~~l~v~~~~~------~~i~~~~~~g~~~~~~~~~~~~~---~g~  266 (372)
                      .+...||.++.+++....+..+-....++ ++.|++.+|++.+..      ..|+++.+++..  ..+.....+   .+.
T Consensus       341 dg~~~ly~~~~~g~~~~~lt~g~~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~--~~~~lt~~~~~~~~~  417 (470)
T d2bgra1         341 EGYRHICYFQIDKKDCTFITKGTWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDYT--KVTCLSCELNPERCQ  417 (470)
T ss_dssp             TSCEEEEEEETTCSCCEESCCSSSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCTT--CEEESSTTTSTTTBC
T ss_pred             CcCceeEEEeccCCceeeeccCCeeEEEE-EEECCCEEEEEEecCCCCcceEEEEEEECCCCC--ceeEecccccCCCCC
Confidence            34567999998867666554443333444 566777888875422      259999988742  222222111   112


Q ss_pred             CceeEEcCCCCEEEEEec
Q 017371          267 PDNINLAPDGTFWIAIIK  284 (372)
Q Consensus       267 p~~i~~d~~G~lwva~~~  284 (372)
                      -..+.+.+||.+++....
T Consensus       418 ~~s~~fSpdgky~~~~~s  435 (470)
T d2bgra1         418 YYSVSFSKEAKYYQLRCS  435 (470)
T ss_dssp             BEEEEECTTSSEEEEEEC
T ss_pred             EEEEEECCCCCEEEEEec
Confidence            356889999998887765

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.55  E-value=5.1  Score=36.78  Aligned_cols=78  Identities=14%  Similarity=0.244  Sum_probs=50.0

Q ss_pred             cccCceEecCCCCCC----CccEEEcCCCcEEEEecCCeEEEEe--CCceEEEEecC----------C-CcccCeEEcCC
Q 017371           66 QLQDFIKVGEGSVNH----PEDASMDKNGVIYTATRDGWIKRLQ--DGTWVNWKFID----------S-QTLVGLTSTKE  128 (372)
Q Consensus        66 ~l~~~~~~~~g~~~~----p~~i~~d~~G~l~v~~~~g~i~~~~--~g~~~~~~~~~----------~-~p~~gl~~d~d  128 (372)
                      .|..++....|....    ..-+..  +|.||+++.++.|+.+|  +|+.. |....          . ... |++.. +
T Consensus        43 ~L~~aW~~~~g~~~~~~~~stPiv~--~g~vy~~t~~~~v~AlDa~TG~~l-W~~~~~~~~~~~~~~~~~~r-g~a~~-~  117 (582)
T d1flga_          43 KLTPAWSYSFGDEKQRGQESQAIVS--DGVIYVTASYSRLFALDAKTGKRL-WTYNHRLPDDIRPCCDVVNR-GAAIY-G  117 (582)
T ss_dssp             GCEEEEEEECCTTCCSCCCCCCEEE--TTEEEEEETTTEEEEEESSSCCEE-EEEECCCCTTCCCSSCSCCC-CCEEE-T
T ss_pred             hceEEEEEeCCCCCCCCcccCCEEE--CCEEEEeCCCCeEEEEeCCCCCeE-EEEcCCCCCccccccccccC-CceEe-C
Confidence            455666665542111    122444  58999999999999999  67654 32110          1 112 55655 5


Q ss_pred             CCEEEEeCCCcEEEEc-CCCc
Q 017371          129 GHLIICDNANGLHKVS-EDGV  148 (372)
Q Consensus       129 G~l~v~~~~~gv~~~~-~~g~  148 (372)
                      +++++.+....++.+| .+|.
T Consensus       118 ~~i~~~t~~~~l~alda~tG~  138 (582)
T d1flga_         118 DKVFFGTLDASVVALNKNTGK  138 (582)
T ss_dssp             TEEEEEETTTEEEEEESSSCC
T ss_pred             CceEEecCCCeEEEecccccc
Confidence            7899988777799999 6773

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.52  E-value=2.9  Score=33.93  Aligned_cols=57  Identities=12%  Similarity=0.067  Sum_probs=31.0

Q ss_pred             EcCCC-cEEEEecCCeEEEEe--CCceEE-EEecCCCcccCeEEcCCCCEEEEeCCCcEEEEc
Q 017371           86 MDKNG-VIYTATRDGWIKRLQ--DGTWVN-WKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS  144 (372)
Q Consensus        86 ~d~~G-~l~v~~~~g~i~~~~--~g~~~~-~~~~~~~p~~gl~~d~dG~l~v~~~~~gv~~~~  144 (372)
                      ++.+| .|..|+.||.|..|+  +++... +....+... .+++.++ .|+.+..+.-+..++
T Consensus        23 ~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~-~v~~~~~-~l~s~s~D~~~~~~~   83 (342)
T d2ovrb2          23 LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVW-SSQMRDN-IIISGSTDRTLKVWN   83 (342)
T ss_dssp             EEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEE-EEEEETT-EEEEEETTSCEEEEE
T ss_pred             EEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEE-EEEeCCC-ccccceecccccccc
Confidence            44445 466677899999999  565433 222223345 7777643 343333333344444

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=90.02  E-value=6.9  Score=35.74  Aligned_cols=43  Identities=21%  Similarity=0.195  Sum_probs=28.8

Q ss_pred             CCCceEEEEEC-CCCcEEEEEECCCCCeeccceeeEEECCEEEEEe
Q 017371          316 LGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVIS  360 (372)
Q Consensus       316 ~~~~~~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~igs  360 (372)
                      ....+.+.++| .+|+++..+..+.+..-..++  .+.+|+.||.-
T Consensus       494 G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~t--y~~~GkQYv~v  537 (573)
T d1kb0a2         494 GTADGRLVAYHAATGEKLWEAPTGTGVVAAPST--YMVDGRQYVSV  537 (573)
T ss_dssp             ECTTSEEEEEETTTCCEEEEEECSSCCCSCCEE--EEETTEEEEEE
T ss_pred             ECCCCeEEEEECCCCcEeEEEECCCCccccCEE--EEECCEEEEEE
Confidence            44568899999 469999999998764222221  13577777643

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.00  E-value=1.3  Score=39.77  Aligned_cols=101  Identities=7%  Similarity=-0.102  Sum_probs=54.6

Q ss_pred             CcEEEEc-CCC-cEEEeeecCCcccccccceEEccCCc-EEEE-eCCCCCCCcccccccccccCCCeEEEEeCCCCeEEE
Q 017371          138 NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFT-VSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL  213 (372)
Q Consensus       138 ~gv~~~~-~~g-~~~l~~~~~~~~~~~~~~l~~d~dG~-i~vt-d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~t~~~~~  213 (372)
                      ..+..++ .++ .+.+....... ...+....+.+||+ |++. |....|          .....+..+.||..+++.+.
T Consensus        37 g~i~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~SpD~~~vl~~~~~~~~~----------r~s~~~~~~i~d~~~~~~~~  105 (465)
T d1xfda1          37 GTVRLWNVETNTSTVLIEGKKIE-SLRAIRYEISPDREYALFSYNVEPIY----------QHSYTGYYVLSKIPHGDPQS  105 (465)
T ss_dssp             SCEEEBCGGGCCCEEEECTTTTT-TTTCSEEEECTTSSEEEEEESCCCCS----------SSCCCSEEEEEESSSCCCEE
T ss_pred             CcEEEEECCCCCEEEEEcCcccc-ccccceeEECCCCCeEEEEEccccee----------EeeccccEEEEEccCCceee
Confidence            3456666 455 44443321111 12344567889985 4443 332111          12245788999998888776


Q ss_pred             EeCCccCc---ceEEEecCCCEEEEEeCCCCeEEEEEccCC
Q 017371          214 VADGFYFA---NGVALSRDEDYVVVCESWKFRCRKYWLKGE  251 (372)
Q Consensus       214 ~~~~~~~~---~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~  251 (372)
                      +.......   .-..|+|||+.+.+..  ++.|+..+..+.
T Consensus       106 l~~~~~~~~~l~~~~wSPDG~~iafv~--~~nl~~~~~~~~  144 (465)
T d1xfda1         106 LDPPEVSNAKLQYAGWGPKGQQLIFIF--ENNIYYCAHVGK  144 (465)
T ss_dssp             CCCTTCCSCCCSBCCBCSSTTCEEEEE--TTEEEEESSSSS
T ss_pred             ccCccCCccccceeeeccCCceEEEEe--cceEEEEecCCC
Confidence            54322222   1256889998776654  345777665543

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=89.82  E-value=5.8  Score=36.57  Aligned_cols=19  Identities=11%  Similarity=0.064  Sum_probs=15.3

Q ss_pred             ceEEEEEC-CCCcEEEEEEC
Q 017371          319 GAHLIHVA-EDGTIIRNLVD  337 (372)
Q Consensus       319 ~~~v~~~~-~~g~~~~~~~~  337 (372)
                      .+.|..|| .+|+++..++.
T Consensus       181 ~G~v~A~Da~TG~~~W~~~t  200 (596)
T d1w6sa_         181 RGYLTAYDVKTGEQVWRAYA  200 (596)
T ss_dssp             CCEEEEEETTTCCEEEEEES
T ss_pred             cCceEEEECCCCcEEEEeec
Confidence            47899999 46999988764

>d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase
family: Oligoxyloglucan reducing end-specific cellobiohydrolase
domain: Oligoxyloglucan reducing end-specific cellobiohydrolase
species: Yeast (Geotrichum sp. M128) [TaxId: 203496]

Probab=89.49  E-value=6  Score=34.27  Aligned_cols=116  Identities=9%  Similarity=0.078  Sum_probs=63.8

Q ss_pred             CCCcccCeEEcCCC--CEEEEeCCCcEEEEcCCC--cEEEeeecC--CcccccccceEEccC--CcEEEEeCCCCCCCcc
Q 017371          116 DSQTLVGLTSTKEG--HLIICDNANGLHKVSEDG--VENFLSYVN--GSKLRFANDVVEASD--GSLYFTVSSSKYLPHE  187 (372)
Q Consensus       116 ~~~p~~gl~~d~dG--~l~v~~~~~gv~~~~~~g--~~~l~~~~~--~~~~~~~~~l~~d~d--G~i~vtd~~~~~~~~~  187 (372)
                      +++.. +|+++|..  .+|++....||++-+..|  .+.+.....  ......+.+|++|+.  ..||++...       
T Consensus        11 gg~~~-~i~~~P~~~~~~ya~~~~gGv~~S~dgG~tW~~~~~~~~~~~~~~~~~~~iavdp~np~~vy~~tg~-------   82 (427)
T d2ebsa1          11 GGYIT-GIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGR-------   82 (427)
T ss_dssp             CSCEE-EEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECS-------
T ss_pred             CCcEE-EEEECCCCCCEEEEEecCCCEEEEECCCCceEECCCCCCCCCcccccEeEEEECCCCCCEEEEEecc-------
Confidence            34556 99998764  688877656898876445  444322111  112334568999986  478886431       


Q ss_pred             cccccccccCCCeEEEEeCCCCeEEEEeCCcc---------CcceEEEecC-CCEEEEEeCCCCeEEE
Q 017371          188 YCLDILEGKPHGQLLKYDPSSNITTLVADGFY---------FANGVALSRD-EDYVVVCESWKFRCRK  245 (372)
Q Consensus       188 ~~~~~~~~~~~g~v~~~d~~t~~~~~~~~~~~---------~~~gi~~~~d-g~~l~v~~~~~~~i~~  245 (372)
                           ......++|++=.-.....+.+.....         ....++++|. .+.+|++. ....|++
T Consensus        83 -----~~~~~~~gi~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~~-~~~gl~~  144 (427)
T d2ebsa1          83 -----YVGDEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGT-RTEGIWK  144 (427)
T ss_dssp             -----CTTSSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEEC-SSSCEEE
T ss_pred             -----ccCCcCccEEEeCCCCccceeecCCcccCccccCccceeEEEECCCccCcccccc-cccceee
Confidence                 011233567654433234444433221         1235888885 44566654 3445775

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=83.15  E-value=9.3  Score=30.19  Aligned_cols=27  Identities=19%  Similarity=0.198  Sum_probs=19.3

Q ss_pred             CCcEEEEEECCCCCeeccceeeEEECCEEEEEeC
Q 017371          328 DGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISL  361 (372)
Q Consensus       328 ~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~igs~  361 (372)
                      +|+.+   ..|.|.    .+.++..+++||+...
T Consensus       266 nGk~i---n~p~G~----~~gat~i~~~iyfshs  292 (313)
T d2hu7a1         266 DGERV---EAPQGN----HGRVVLWRGKLVTSHT  292 (313)
T ss_dssp             TTEEE---CCCSSE----EEEEEEETTEEEEEEE
T ss_pred             cceEe---cCCCCc----ccceEEECCEEEEeec
Confidence            67765   356664    6777878889998754

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=80.97  E-value=3.2  Score=35.27  Aligned_cols=80  Identities=14%  Similarity=0.121  Sum_probs=45.7

Q ss_pred             eEEEEeCCCCeEEEEe----CCccCcceEEEecCCCEEEEEeCCCCeEEEEEccCCCCcceeeeccC-CCCCCceeEEcC
Q 017371          200 QLLKYDPSSNITTLVA----DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAEN-LPGAPDNINLAP  274 (372)
Q Consensus       200 ~v~~~d~~t~~~~~~~----~~~~~~~gi~~~~dg~~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~-~~g~p~~i~~d~  274 (372)
                      .+.+||+.+++.+...    ....+..+.++.+||+.+++.......+.+|++....   ....... .+..-...++-.
T Consensus        53 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~---w~~~~~~~~~r~~~~~~~~~  129 (387)
T d1k3ia3          53 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDS---WIPGPDMQVARGYQSSATMS  129 (387)
T ss_dssp             EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTE---EEECCCCSSCCSSCEEEECT
T ss_pred             EEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCc---ccccccccccccccceeeec
Confidence            4678999988765421    1123345778889998444443445679999986532   1111111 112234566666


Q ss_pred             CCCEEEEE
Q 017371          275 DGTFWIAI  282 (372)
Q Consensus       275 ~G~lwva~  282 (372)
                      ||.+|+..
T Consensus       130 dG~v~v~G  137 (387)
T d1k3ia3         130 DGRVFTIG  137 (387)
T ss_dssp             TSCEEEEC
T ss_pred             CCceeeec
Confidence            77777764