Citrus Sinensis ID: 017375

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370--
Protein Sequence
MDVFNVTDEDGNKITDEGILDYIRKCLGPEACFASSMRSVGVKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRVSEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQTILKVKGNPEDLKSASQDSPTRFLFGGLFKSRSFVNFGLVRSCS
Secondary Structure (PSIPRED)
ccEEEEEcccccccccHHHHHHHHHHcccccccccccEEEccccccccEEEEEEccccccHHHHHHHHHHHcccEEEEEEEEEccccEEEEEEEEEcccccccccHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccEEEEEccccccEEEEEEEEcccccHHHHHHHHHHccccEEEEEEEEEcccEEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHcccccEEEEEEcccccHHHHHHHHHHHccEEEEEEEEEEEccEEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccEEEcccccccccccccEEccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEcccccEcccHHHHHHHHHHccccccccccccccccccccccEEEEEEccccccHHHHHHHHHHHccccEEEEEEEEccccEEEEEEEEEcccccccccHHHHHHHHHHHHHHHccccccHccccccccccccHHHHHHHHHcccccHHHccccccccccccccEEEEEccccccEEEEEEEccccccHHHHHHHHHHHccEEEEEEEEEccccEEEEEEEEEEccccccccHHHHHHHHHHHHHHHHHcccccEEEEEEccccccHHHHHHHHHHHcccEEEEEEEEEccccEEEEEEEEccccccccHHHHHHHHHHHcccEEEEcccccccccccccccccEEEcHccccccccccccEEccc
Coil and Loop (DISEMBL)
mdvfnvtdedgnkitdeGILDYIRKclgpeacfassmrsvgvkqsmdhtaieltgsdrpglLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQvtdeetggaisdpeRLSVIKELLCNVlkgsnksglaktevsQDVTHTERRLHQMMFAdrdyertgtdddsldekqrpnvnvvncydkdysvvtitskdrpklvfDTVCTLTDMQYVVFHanidaegpeAYQEYFIRhidgspvksdaERERVIQCLKAAIERRVSEglklelcttdrvgLLSNVTRIFRENSLTVTRAEVatksgkavntfyvggasgypvdaKIIDSIRQSIGQTILKvkgnpedlksasqdsptrflfgglfksrsfvnfglvrscs
Flexible Loop (DISEMBL)
mdvfnvtdedgnkitdegILDYIRKCLGPEACFASSMRSVGVKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALmqvtdeetggaisdperLSVIKELLCNVLkgsnksglaktevsqdvthterRLHQMMFADRDYertgtdddsldekqrpnvnvvncydkdysvvtitskdrpkLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDgspvksdaERERVIQCLKAAIerrvseglklelcttdrvgllsnvtrifrensltvtraevatksgkavntfyvGGASGYPVDAKIIDSIRQSIGQTILKVkgnpedlksasqDSPTRFLFgglfksrsfvnfglvrscs
Low Complexity Region (SEG)
MDVFNVTDEDGNKITDEGILDYIRKCLGPEACFASSMRSVGVKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRVSEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQTILKVKGNPEDLKSASQDSPTRFLFGGLFKSRSFVNFGLVRSCS
Disordered region (IsUnstruct)
************KITDEGILDYIRKCLGPEACFASSMRSVGV******TAIELTG*DRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDE*TGGAIS*PERLSVIKELLCNVLK**************************************************VNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVK*DAERERVIQCLKAAIERRVSEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQTILKV****************RFLFGGLFKSRSFVNFGLV****
Disordered Region (DISOPRED)
MDVFNVTDEDGNKITDEGILDYIRKCLGP***********GVKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRVSEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQTIL************************LFKSRSFVNFGLVRSC*
Disordered Region (DISEMBL)
********EDGNKITDEGILDYIRKCLGPEACFASSMRSVGVKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKGSNK**************TERRLHQMMFADRDY***********EKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRVSEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQTILKVKGNP********DSPTRFLFGGLFKSRSFVNFGLVRSCS
Disordered Region (DISPRO)
MDVFNVTDEDGNKITDEGILDYIRKCLGPE**************SMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKGS***************HTERRLHQMMFADRDYERT*********KQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRVSEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQTILKVKGN***********PTRFLFGGLFKSRSFVNFGLVRSCS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDVFNVTDEDGNKITDEGILDYIRKCLGPEACFASSMRSVGVKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRVSEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQTILKVKGNPEDLKSASQDSPTRFLFGGLFKSRSFVNFGLVRSCS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	372	2.2.26 [Sep-21-2011]
Q89VX9	929	[Protein-PII] uridylyltra	yes	no	0.198	0.079	0.426	1e-07
Q1QRM1	931	[Protein-PII] uridylyltra	yes	no	0.193	0.077	0.424	2e-07
Q3SWE0	925	[Protein-PII] uridylyltra	yes	no	0.209	0.084	0.392	2e-07
A4YKP3	931	[Protein-PII] uridylyltra	yes	no	0.236	0.094	0.359	7e-07
A5ETJ9	931	[Protein-PII] uridylyltra	yes	no	0.217	0.087	0.390	8e-07
P62223	929	[Protein-PII] uridylyltra	yes	no	0.209	0.083	0.367	2e-06
Q2RNG2	936	[Protein-PII] uridylyltra	yes	no	0.489	0.194	0.230	4e-06
Q5FPT6	949	[Protein-PII] uridylyltra	yes	no	0.193	0.075	0.397	9e-06
Q98C27	933	[Protein-PII] uridylyltra	yes	no	0.217	0.086	0.369	2e-05
A4XWU3	899	[Protein-PII] uridylyltra	yes	no	0.298	0.123	0.268	4e-05

>sp|Q89VX9|GLND_BRAJA [Protein-PII] uridylyltransferase OS=Bradyrhizobium japonicum (strain USDA 110) GN=glnD PE=3 SV=2

 Score = 57.8 bits (138), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 44/75 (58%), Gaps = 1/75 (1%)

Query: 48  HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPE 107
           +T IE++G DRPGLL E++  ++ L  N+ SA V T   RA  +  VTD   G  I+ P 
Sbjct: 848 YTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVTD-LLGAQINAPT 906

Query: 108 RLSVIKELLCNVLKG 122
           R S IK  L +V+ G
Sbjct: 907 RQSAIKSALTHVMAG 921

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.
Bradyrhizobium japonicum (strain USDA 110) (taxid: 224911)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 5EC: 9

>sp|Q1QRM1|GLND_NITHX [Protein-PII] uridylyltransferase OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=glnD PE=3 SV=1

 Score = 57.0 bits (136), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 1/73 (1%)

Query: 48  HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPE 107
           HT IE++G DRPGLL +++A ++ L  N+ SA V T   RA  +  VTD   G  I+ P 
Sbjct: 849 HTVIEVSGLDRPGLLFQLTAAISKLNLNIASAHVATFGERARDVFYVTD-LLGARITAPT 907

Query: 108 RLSVIKELLCNVL 120
           R + IK  L ++L
Sbjct: 908 RQAAIKRALIHLL 920

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Nitrobacter hamburgensis (strain X14 / DSM 10229) (taxid: 323097)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q3SWE0|GLND_NITWN [Protein-PII] uridylyltransferase OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=glnD PE=3 SV=1

 Score = 57.0 bits (136), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 1/79 (1%)

Query: 48  HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPE 107
           HT IE++G DRPGLL +++  ++ L  N+ SA V T   RA  +  VTD   G  I+ P 
Sbjct: 847 HTMIEVSGLDRPGLLFQLTTAISKLNLNIASAHVATFGERARDVFYVTD-LLGARITAPT 905

Query: 108 RLSVIKELLCNVLKGSNKS 126
           R + IK  L ++L   N +
Sbjct: 906 RQAAIKRALVHLLASGNTA 924

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) (taxid: 323098)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|A4YKP3|GLND_BRASO [Protein-PII] uridylyltransferase OS=Bradyrhizobium sp. (strain ORS278) GN=glnD PE=3 SV=1

 Score = 55.5 bits (132), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 1/89 (1%)

Query: 39  SVGVKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEE 98
           S+  + S  +T IE++G DRPGLL E++  ++ L  N+ SA V T   RA  +  VTD  
Sbjct: 840 SINNQWSELYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVTD-L 898

Query: 99  TGGAISDPERLSVIKELLCNVLKGSNKSG 127
            G  I+ P R + IK  L ++L   + + 
Sbjct: 899 LGAQINAPTRQAAIKSALLHLLASEDAAA 927

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Bradyrhizobium sp. (strain ORS278) (taxid: 114615)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|A5ETJ9|GLND_BRASB [Protein-PII] uridylyltransferase OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=glnD PE=3 SV=1

 Score = 55.1 bits (131), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 1/82 (1%)

Query: 39  SVGVKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEE 98
           S+  + S  +T IE++G DRPGLL E++  ++ L  N+ SA V T   RA  +  VTD  
Sbjct: 840 SINNQWSELYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVTD-L 898

Query: 99  TGGAISDPERLSVIKELLCNVL 120
            G  I+ P R + IK  L ++L
Sbjct: 899 LGAQINAPTRQAAIKSALLHLL 920

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) (taxid: 288000)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|P62223|GLND_RHOPA [Protein-PII] uridylyltransferase OS=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) GN=glnD PE=3 SV=1

 Score = 53.5 bits (127), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 1/79 (1%)

Query: 48  HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPE 107
           +T IE++G DRPGLL +++  ++ L  N+ SA V T   RA  +  VTD   G  I+ P 
Sbjct: 847 YTVIEVSGLDRPGLLYQLTTAISKLNLNIASAHVATFGERARDVFYVTD-LLGAQITAPT 905

Query: 108 RLSVIKELLCNVLKGSNKS 126
           R + IK  L ++L   + +
Sbjct: 906 RQAAIKRALVHLLANGDAA 924

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) (taxid: 258594)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q2RNG2|GLND_RHORT [Protein-PII] uridylyltransferase OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=glnD PE=3 SV=1

 Score = 52.8 bits (125), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 86/208 (41%), Gaps = 26/208 (12%)

Query: 57  DRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELL 116
           D PGL S+++  +     N++ A++ T +   A  +       G AI   ER++ + + +
Sbjct: 735 DHPGLFSKIAGAMALAGVNILDAKITTMSDGGALDIFTVQTLEGHAIEKEERIARLAKTV 794

Query: 117 CNVLKGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVN 176
            +VL G     L K    Q     ER  H  +                     P V V N
Sbjct: 795 RDVLTGDLP--LEKALRRQPPRLPERTRHLTV--------------------PPRVIVDN 832

Query: 177 CYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPV 236
              K ++V+ I  +DRP  ++     LTD+   +  A +   G      ++++ + G  +
Sbjct: 833 QASKTHTVIEINGRDRPGFLYAVTRALTDVAVQISSARVSTYGERVVDSFYVKDVFGMKI 892

Query: 237 KSDAERERVIQCLKAAI----ERRVSEG 260
              A+  ++ + L+AAI     R+V EG
Sbjct: 893 VHRAKLAQIREALEAAITQTVPRKVEEG 920

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) (taxid: 269796)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q5FPT6|GLND_GLUOX [Protein-PII] uridylyltransferase OS=Gluconobacter oxydans (strain 621H) GN=glnD PE=3 SV=1

 Score = 51.6 bits (122), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 1/73 (1%)

Query: 48  HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPE 107
           HT IE+ G DRPGLL +V++ L+     + SA + T+  RA  +  V D   G  I+DP 
Sbjct: 868 HTVIEVNGRDRPGLLHDVTSALSSASLQISSAHITTYGMRAVDVFYVRD-LLGMKITDPV 926

Query: 108 RLSVIKELLCNVL 120
           RL+ ++E L   L
Sbjct: 927 RLARLRETLLASL 939

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Gluconobacter oxydans (strain 621H) (taxid: 290633)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q98C27|GLND_RHILO [Protein-PII] uridylyltransferase OS=Rhizobium loti (strain MAFF303099) GN=glnD PE=3 SV=1

 Score = 50.8 bits (120), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 3/84 (3%)

Query: 49  TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPER 108
           + IE+ G DRPGLLSE++  L+ L  ++ SA + T   +      VTD  TG  I  P R
Sbjct: 847 SVIEVEGLDRPGLLSEITGTLSDLSLDIASAHITTFGEKVIDTFYVTD-LTGQKIDSPAR 905

Query: 109 LSVIKELLCNVLKG--SNKSGLAK 130
           ++ I+  L   L+G    + G AK
Sbjct: 906 IATIRNRLMATLEGIAPERGGKAK 929

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Rhizobium loti (strain MAFF303099) (taxid: 266835)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|A4XWU3|GLND_PSEMY [Protein-PII] uridylyltransferase OS=Pseudomonas mendocina (strain ymp) GN=glnD PE=3 SV=1

 Score = 49.7 bits (117), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 27/138 (19%)

Query: 231 IDGSPVKSDAERERVIQCLK------AAIERRVSEGLK--------------------LE 264
           I  +P +    RE +I+ LK        I+RRV   LK                    LE
Sbjct: 759 IGDNPARIKQIREGLIEALKNPDEYPTIIQRRVPRQLKHFAFAPQVTIHNDAQRPVTILE 818

Query: 265 LCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPV-DAKIIDSIR 323
           L   DR GLL+ + RIF E  L++  A++AT   +  + F+V  A+  P+ D ++   ++
Sbjct: 819 LTAPDRPGLLARIGRIFLEYDLSLQNAKIATLGERVEDVFFVTDANNQPLSDPELCARLQ 878

Query: 324 QSIGQTILKVKGNPEDLK 341
           ++I + + +    P+ L+
Sbjct: 879 ETIVRRLSEPSAQPQSLQ 896

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Pseudomonas mendocina (strain ymp) (taxid: 399739)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	372
224108635	443	predicted protein [Populus trichocarpa]	0.994	0.835	0.854	0.0
255541934	443	amino acid binding protein, putative [Ri	0.994	0.835	0.854	0.0
356499934	449	PREDICTED: uncharacterized protein LOC10	0.997	0.826	0.827	0.0
224101597	443	predicted protein [Populus trichocarpa]	0.994	0.835	0.817	1e-180
356495189	449	PREDICTED: uncharacterized protein LOC10	0.997	0.826	0.819	1e-179
357487953	451	ACR4 [Medicago truncatula] gi|355515599|	0.986	0.813	0.806	1e-172
356499936	433	PREDICTED: uncharacterized protein LOC10	0.959	0.824	0.794	1e-169
449452827	444	PREDICTED: uncharacterized protein LOC10	0.989	0.828	0.782	1e-165
312281803	451	unnamed protein product [Thellungiella h	1.0	0.824	0.769	1e-165
297838675	455	hypothetical protein ARALYDRAFT_476032 [	1.0	0.817	0.764	1e-164

>gi|224108635|ref|XP_002314917.1| predicted protein [Populus trichocarpa] gi|222863957|gb|EEF01088.1| predicted protein [Populus trichocarpa]

 Score =  655 bits (1690), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/372 (85%), Positives = 343/372 (92%), Gaps = 2/372 (0%)

Query: 1   MDVFNVTDEDGNKITDEGILDYIRKCLGPEACFASSMRSVGVKQSMDHTAIELTGSDRPG 60
           MDVFNVTD DGNK+TDE ILDYI K LGPE+CF SSMRSVGVKQSMDHTAIELTGSDRPG
Sbjct: 74  MDVFNVTDPDGNKVTDEAILDYITKSLGPESCFTSSMRSVGVKQSMDHTAIELTGSDRPG 133

Query: 61  LLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVL 120
           LLSEVSAVLTHLKCNVV+AEVWTHN RAAA+MQVTDEETG AI DPE+LS IKELLCNVL
Sbjct: 134 LLSEVSAVLTHLKCNVVNAEVWTHNMRAAAVMQVTDEETGSAIIDPEKLSRIKELLCNVL 193

Query: 121 KGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDK 180
           KGSNKS  AKT VS  VTHTERRLHQMMFADRDYER   ++D LDEKQRPNV+VVN  +K
Sbjct: 194 KGSNKSRGAKTVVSHGVTHTERRLHQMMFADRDYERA--NNDELDEKQRPNVSVVNWCEK 251

Query: 181 DYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDA 240
           DYSVVTITSKDRPKL+FDTVCTLTDM+YVVFHANIDAEGPEA+QEY+I+HIDGSPVKS+A
Sbjct: 252 DYSVVTITSKDRPKLLFDTVCTLTDMEYVVFHANIDAEGPEAHQEYYIKHIDGSPVKSEA 311

Query: 241 ERERVIQCLKAAIERRVSEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKA 300
           ER+R+IQCL+AAIERRVSEGLKLELCTTDRVGLLS+VTRIFRENSLTVTRAEV T++GKA
Sbjct: 312 ERQRIIQCLEAAIERRVSEGLKLELCTTDRVGLLSDVTRIFRENSLTVTRAEVTTRAGKA 371

Query: 301 VNTFYVGGASGYPVDAKIIDSIRQSIGQTILKVKGNPEDLKSASQDSPTRFLFGGLFKSR 360
           VNTFYV  ASGYPVDAK IDSIRQ+IGQTILKVK +PE+ K  SQ+SPTRFLFGGLFKSR
Sbjct: 372 VNTFYVSDASGYPVDAKTIDSIRQAIGQTILKVKSSPEEQKPVSQESPTRFLFGGLFKSR 431

Query: 361 SFVNFGLVRSCS 372
           SFVNFGLVRS S
Sbjct: 432 SFVNFGLVRSYS 443

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541934|ref|XP_002512031.1| amino acid binding protein, putative [Ricinus communis] gi|223549211|gb|EEF50700.1| amino acid binding protein, putative [Ricinus communis]

 Score =  645 bits (1664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/372 (85%), Positives = 336/372 (90%), Gaps = 2/372 (0%)

Query: 1   MDVFNVTDEDGNKITDEGILDYIRKCLGPEACFASSMRSVGVKQSMDHTAIELTGSDRPG 60
           MDVFNV D+DGNKITDE ILDYIRK LGPE+ F SSMRSVGV  SMDHT+IELTGSDRPG
Sbjct: 74  MDVFNVRDQDGNKITDEAILDYIRKSLGPESRFTSSMRSVGVIPSMDHTSIELTGSDRPG 133

Query: 61  LLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVL 120
           LLSE+SAVLTHLKCNVVSAEVWTHN RAAA+MQVTDEETG AI DPERLS IKELLCNVL
Sbjct: 134 LLSELSAVLTHLKCNVVSAEVWTHNMRAAAVMQVTDEETGSAIIDPERLSRIKELLCNVL 193

Query: 121 KGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDK 180
           KGSNK   AKT VS  VTHTERRLHQMMFADRDYER   DD+ LDEKQRPNV+VVN YDK
Sbjct: 194 KGSNKFRGAKTVVSHGVTHTERRLHQMMFADRDYERA--DDEVLDEKQRPNVSVVNWYDK 251

Query: 181 DYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDA 240
           DYSVVTI SKDRPKL+FDTVCTLTDM+YVVFHANIDAEGPEAYQEY+IRHIDGSPVKSDA
Sbjct: 252 DYSVVTIRSKDRPKLLFDTVCTLTDMEYVVFHANIDAEGPEAYQEYYIRHIDGSPVKSDA 311

Query: 241 ERERVIQCLKAAIERRVSEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKA 300
           ER RVIQCL+AAIERRVSEGLKLELCTTDRVGLLS+VTRIFRENSLTVTRAEV T+ GKA
Sbjct: 312 ERMRVIQCLEAAIERRVSEGLKLELCTTDRVGLLSDVTRIFRENSLTVTRAEVTTRDGKA 371

Query: 301 VNTFYVGGASGYPVDAKIIDSIRQSIGQTILKVKGNPEDLKSASQDSPTRFLFGGLFKSR 360
           +NTFYV  ASGY VD K I+SIRQ IGQTILKVK NP++LK  SQ+SPTRFLFGGLFKSR
Sbjct: 372 INTFYVRDASGYLVDGKTIESIRQVIGQTILKVKSNPDELKPVSQESPTRFLFGGLFKSR 431

Query: 361 SFVNFGLVRSCS 372
           SFVNFGLVRS S
Sbjct: 432 SFVNFGLVRSYS 443

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499934|ref|XP_003518790.1| PREDICTED: uncharacterized protein LOC100813551 isoform 1 [Glycine max]

 Score =  639 bits (1647), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 308/372 (82%), Positives = 335/372 (90%), Gaps = 1/372 (0%)

Query: 1   MDVFNVTDEDGNKITDEGILDYIRKCLGPEACFASSMRSVGVKQSMDHTAIELTGSDRPG 60
           MDVFNVT +DGNK+TDE ILDYIRK LGPE+C  S MRSVGVKQ+MDHTAIEL G+DRPG
Sbjct: 79  MDVFNVTGQDGNKVTDEAILDYIRKSLGPESCVTSPMRSVGVKQTMDHTAIELMGTDRPG 138

Query: 61  LLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVL 120
           LLSEVSAVLT+LKCN+++AEVWTHNTRAAA+M VTDEETG AISDP+RLS+IKELLCNVL
Sbjct: 139 LLSEVSAVLTNLKCNILNAEVWTHNTRAAAVMHVTDEETGSAISDPQRLSIIKELLCNVL 198

Query: 121 KGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDK 180
            G NK   AKT V+ + THTERRLHQMMFADRDYER   DDD   EKQRPNVNVVN  DK
Sbjct: 199 GGGNKKRGAKTVVTDEATHTERRLHQMMFADRDYERVN-DDDDFAEKQRPNVNVVNWSDK 257

Query: 181 DYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDA 240
           DYSVVTI  KDRPKL+FDTVCTLTDMQYVVFHANIDAEGPEAYQEY+I+HIDGSPVKSDA
Sbjct: 258 DYSVVTIQCKDRPKLLFDTVCTLTDMQYVVFHANIDAEGPEAYQEYYIKHIDGSPVKSDA 317

Query: 241 ERERVIQCLKAAIERRVSEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKA 300
           ER+RVIQCL AAIERRVSEGLKLELCTTDRVGLLS+VTRIFRENSLTVTRAEVATK GKA
Sbjct: 318 ERQRVIQCLAAAIERRVSEGLKLELCTTDRVGLLSDVTRIFRENSLTVTRAEVATKGGKA 377

Query: 301 VNTFYVGGASGYPVDAKIIDSIRQSIGQTILKVKGNPEDLKSASQDSPTRFLFGGLFKSR 360
           VNTFYV GASG+PVD+K I+SIRQ+IG TILKVKG+PE++KS  QDSPTR LF GLFKSR
Sbjct: 378 VNTFYVRGASGFPVDSKTIESIRQTIGNTILKVKGSPEEMKSVPQDSPTRSLFSGLFKSR 437

Query: 361 SFVNFGLVRSCS 372
           SFVNFGLV+S S
Sbjct: 438 SFVNFGLVKSYS 449

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101597|ref|XP_002312346.1| predicted protein [Populus trichocarpa] gi|222852166|gb|EEE89713.1| predicted protein [Populus trichocarpa]

 Score =  637 bits (1644), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 304/372 (81%), Positives = 340/372 (91%), Gaps = 2/372 (0%)

Query: 1   MDVFNVTDEDGNKITDEGILDYIRKCLGPEACFASSMRSVGVKQSMDHTAIELTGSDRPG 60
           MDVFNVTD+DGNK+TDE ILDYI K LG E+CF SSM S GVKQS+DHTAIELTGSDRPG
Sbjct: 74  MDVFNVTDQDGNKVTDEAILDYITKSLGTESCFTSSMGSFGVKQSIDHTAIELTGSDRPG 133

Query: 61  LLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVL 120
           LLSEVSAVL HLKCNV++AEVWTHN RAAA+MQVTD+ETG AI+DPE+LS +KELLCNVL
Sbjct: 134 LLSEVSAVLAHLKCNVLNAEVWTHNMRAAAVMQVTDDETGSAITDPEKLSRVKELLCNVL 193

Query: 121 KGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDK 180
           KGSNK   A+T VS  VTHTERRLHQMMFADRDYER   ++D LDEKQRPNV+VVN Y+K
Sbjct: 194 KGSNKYRGARTVVSHGVTHTERRLHQMMFADRDYERA--NNDVLDEKQRPNVSVVNWYEK 251

Query: 181 DYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDA 240
           DYSV+TI SKDRPKL+FDTVCTLTDM+YVVFHANIDAEGPEA+QEY+I+H+DGSPVKS+A
Sbjct: 252 DYSVITIRSKDRPKLLFDTVCTLTDMEYVVFHANIDAEGPEAHQEYYIKHVDGSPVKSEA 311

Query: 241 ERERVIQCLKAAIERRVSEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKA 300
           ER+R+IQCL+AAIERRVSEGLKLELCT DR+GLLS+VTRIFRENSLTVTRAEV T++GKA
Sbjct: 312 ERQRIIQCLEAAIERRVSEGLKLELCTKDRIGLLSDVTRIFRENSLTVTRAEVTTRAGKA 371

Query: 301 VNTFYVGGASGYPVDAKIIDSIRQSIGQTILKVKGNPEDLKSASQDSPTRFLFGGLFKSR 360
           VNTFYV  ASGYPVDAK IDSIRQ+ GQTILKVKG+PE+LK  SQ+SPTRFLFGGLFKSR
Sbjct: 372 VNTFYVSDASGYPVDAKTIDSIRQATGQTILKVKGSPEELKPVSQESPTRFLFGGLFKSR 431

Query: 361 SFVNFGLVRSCS 372
           SFVNFGLV+S S
Sbjct: 432 SFVNFGLVKSYS 443

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495189|ref|XP_003516462.1| PREDICTED: uncharacterized protein LOC100787134 [Glycine max]

 Score =  634 bits (1636), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 305/372 (81%), Positives = 334/372 (89%), Gaps = 1/372 (0%)

Query: 1   MDVFNVTDEDGNKITDEGILDYIRKCLGPEACFASSMRSVGVKQSMDHTAIELTGSDRPG 60
           MDVFNVT +DGNK+TDE ILDYIRK LGPE+C  S MRSVGVKQ+ DH AIEL G+DRPG
Sbjct: 79  MDVFNVTGQDGNKVTDEAILDYIRKSLGPESCVTSPMRSVGVKQTTDHIAIELMGTDRPG 138

Query: 61  LLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVL 120
           LLSEVSAVLT+LKCN+V+AEVWTHNTRAAA+M VTDEE+G AI+DP+RLS+IKELLCNVL
Sbjct: 139 LLSEVSAVLTNLKCNIVNAEVWTHNTRAAAVMHVTDEESGSAITDPQRLSIIKELLCNVL 198

Query: 121 KGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDK 180
            G NK   AKT V+ + THTERRLHQMMFADRDYER   DDD  DEKQRPNVNVVN  DK
Sbjct: 199 GGGNKKRGAKTVVTDEATHTERRLHQMMFADRDYERVN-DDDDFDEKQRPNVNVVNWSDK 257

Query: 181 DYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDA 240
           DYSVVTI  KDRPKL+FDTVCTLTDMQYVVFHANIDAEGPEAYQEY+I+HIDGSPVKSDA
Sbjct: 258 DYSVVTIQCKDRPKLLFDTVCTLTDMQYVVFHANIDAEGPEAYQEYYIKHIDGSPVKSDA 317

Query: 241 ERERVIQCLKAAIERRVSEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKA 300
           ER+RVIQCL AAI+RRVSEGLKLELCTTDRVGLLS+VTRIFRENSLTVTRAEVATK GKA
Sbjct: 318 ERQRVIQCLAAAIQRRVSEGLKLELCTTDRVGLLSDVTRIFRENSLTVTRAEVATKGGKA 377

Query: 301 VNTFYVGGASGYPVDAKIIDSIRQSIGQTILKVKGNPEDLKSASQDSPTRFLFGGLFKSR 360
           VNTFYV GASG+PVD+K I+SIRQ+IG TILKVKG+PE++KS  QDSPTR LF GLFKSR
Sbjct: 378 VNTFYVRGASGFPVDSKTIESIRQTIGNTILKVKGSPEEMKSVPQDSPTRSLFSGLFKSR 437

Query: 361 SFVNFGLVRSCS 372
           SFVNFGLV+S S
Sbjct: 438 SFVNFGLVKSYS 449

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357487953|ref|XP_003614264.1| ACR4 [Medicago truncatula] gi|355515599|gb|AES97222.1| ACR4 [Medicago truncatula]

 Score =  609 bits (1571), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 301/373 (80%), Positives = 330/373 (88%), Gaps = 6/373 (1%)

Query: 1   MDVFNVTDEDGNKITDEGILDYIRKCLGPEACFASSMRSVGVKQSMDHTAIELTGSDRPG 60
           MDVFNVTD+DGNK+TDE ILDYIRK LGPE+CFA++MRSVGVKQ+ DHTAIEL GSDRPG
Sbjct: 84  MDVFNVTDQDGNKVTDEVILDYIRKSLGPESCFATTMRSVGVKQTPDHTAIELMGSDRPG 143

Query: 61  LLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVL 120
           LLSEVSAVLT+LKCN+V+AEVWTHN RAAA+M VTDEETG AI+D +RLS+IKELLCNVL
Sbjct: 144 LLSEVSAVLTNLKCNIVNAEVWTHNMRAAAVMHVTDEETGSAITDSQRLSLIKELLCNVL 203

Query: 121 KGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDK 180
            G N+   AKT V+ D THT+RRLHQMMF DRDYER   DDD  DEKQRPNV+VVN  DK
Sbjct: 204 GGGNRKRGAKTVVTDDSTHTDRRLHQMMFDDRDYERV--DDDDFDEKQRPNVDVVNWSDK 261

Query: 181 DYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDA 240
           DYSVVTI  +DRPKLVFDTVCTLTDMQYVVFHANIDAEGP+AYQEY+I+HIDGSPVKSDA
Sbjct: 262 DYSVVTIECRDRPKLVFDTVCTLTDMQYVVFHANIDAEGPQAYQEYYIKHIDGSPVKSDA 321

Query: 241 ERERVIQCLKAAIERRVSEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKA 300
           ER+RVI CL+AAIERRVSEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEV TK GKA
Sbjct: 322 ERQRVIHCLEAAIERRVSEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVTTKGGKA 381

Query: 301 VNTFYVGGASGYPVDAKIIDSIRQSIGQTILKVKGNPEDLKSASQDSPTR-FLFGGLFKS 359
           VNTFYV GASG  VD+K I+SIRQ+IG TILKVKG+PE L    QDSPTR  +F GLFKS
Sbjct: 382 VNTFYVRGASGCIVDSKTIESIRQTIGNTILKVKGSPESL---PQDSPTRSSIFSGLFKS 438

Query: 360 RSFVNFGLVRSCS 372
           RSFVNFGLV+S S
Sbjct: 439 RSFVNFGLVKSYS 451

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499936|ref|XP_003518791.1| PREDICTED: uncharacterized protein LOC100813551 isoform 2 [Glycine max]

 Score =  601 bits (1549), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 298/375 (79%), Positives = 324/375 (86%), Gaps = 18/375 (4%)

Query: 1   MDVFNVTDEDGNKITDEGILDYIRKCLGPEACFASSMRSVGVK---QSMDHTAIELTGSD 57
           MDVFNVT +DGNK+TDE ILDYIRK              VGV    Q+MDHTAIEL G+D
Sbjct: 74  MDVFNVTGQDGNKVTDEAILDYIRK--------------VGVSPFGQTMDHTAIELMGTD 119

Query: 58  RPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLC 117
           RPGLLSEVSAVLT+LKCN+++AEVWTHNTRAAA+M VTDEETG AISDP+RLS+IKELLC
Sbjct: 120 RPGLLSEVSAVLTNLKCNILNAEVWTHNTRAAAVMHVTDEETGSAISDPQRLSIIKELLC 179

Query: 118 NVLKGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNC 177
           NVL G NK   AKT V+ + THTERRLHQMMFADRDYER   DDD   EKQRPNVNVVN 
Sbjct: 180 NVLGGGNKKRGAKTVVTDEATHTERRLHQMMFADRDYERVN-DDDDFAEKQRPNVNVVNW 238

Query: 178 YDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVK 237
            DKDYSVVTI  KDRPKL+FDTVCTLTDMQYVVFHANIDAEGPEAYQEY+I+HIDGSPVK
Sbjct: 239 SDKDYSVVTIQCKDRPKLLFDTVCTLTDMQYVVFHANIDAEGPEAYQEYYIKHIDGSPVK 298

Query: 238 SDAERERVIQCLKAAIERRVSEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKS 297
           SDAER+RVIQCL AAIERRVSEGLKLELCTTDRVGLLS+VTRIFRENSLTVTRAEVATK 
Sbjct: 299 SDAERQRVIQCLAAAIERRVSEGLKLELCTTDRVGLLSDVTRIFRENSLTVTRAEVATKG 358

Query: 298 GKAVNTFYVGGASGYPVDAKIIDSIRQSIGQTILKVKGNPEDLKSASQDSPTRFLFGGLF 357
           GKAVNTFYV GASG+PVD+K I+SIRQ+IG TILKVKG+PE++KS  QDSPTR LF GLF
Sbjct: 359 GKAVNTFYVRGASGFPVDSKTIESIRQTIGNTILKVKGSPEEMKSVPQDSPTRSLFSGLF 418

Query: 358 KSRSFVNFGLVRSCS 372
           KSRSFVNFGLV+S S
Sbjct: 419 KSRSFVNFGLVKSYS 433

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452827|ref|XP_004144160.1| PREDICTED: uncharacterized protein LOC101218703 [Cucumis sativus] gi|449524655|ref|XP_004169337.1| PREDICTED: uncharacterized protein LOC101228960 [Cucumis sativus]

 Score =  588 bits (1517), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 292/373 (78%), Positives = 328/373 (87%), Gaps = 5/373 (1%)

Query: 1   MDVFNVTDEDGNKITDEGILDYIRKCLGPEACFASSMRSVGVKQSMDHTAIELTGSDRPG 60
           MDVFNVTD+DGNK+TDEG+LDYI++ L  ++CFASSMRSVGVK S+D+T IEL G+DR G
Sbjct: 74  MDVFNVTDQDGNKVTDEGVLDYIKRSLESDSCFASSMRSVGVKPSVDYTVIELIGNDRQG 133

Query: 61  LLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVL 120
           LLSEVSAVLTHLKCNVV AEVWTHNTRAAA+M VTD+ETG AI+D ERLS IK LL NVL
Sbjct: 134 LLSEVSAVLTHLKCNVVHAEVWTHNTRAAAVMHVTDDETGSAITDLERLSRIKGLLSNVL 193

Query: 121 KGSN-KSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYD 179
           +GSN +S  AKT VS  VTH ERRLHQMMFADRDYE    D+D ++++Q+PNV VVN  D
Sbjct: 194 RGSNSRSKGAKTVVSHGVTHIERRLHQMMFADRDYELL--DEDVMEDQQKPNVKVVNWCD 251

Query: 180 KDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSD 239
            DYSVVTI SKDRPKL+FDTVCTLTDMQYVVFHAN+ AEG EAYQEY+IRHIDGSPVKSD
Sbjct: 252 IDYSVVTIRSKDRPKLLFDTVCTLTDMQYVVFHANVVAEGTEAYQEYYIRHIDGSPVKSD 311

Query: 240 AERERVIQCLKAAIERRVSEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGK 299
           AER+RVI CL+AAI RRVSEGLKLELCTTDRVGLLS+VTRIFRENSLTVTRAEV TK+GK
Sbjct: 312 AERQRVIHCLEAAIRRRVSEGLKLELCTTDRVGLLSDVTRIFRENSLTVTRAEVTTKAGK 371

Query: 300 AVNTFYVGGASGYPVDAKIIDSIRQSIGQTILKVKG--NPEDLKSASQDSPTRFLFGGLF 357
           A+NTFYV   SGYPVD+K IDSIR+ IGQTILKVKG  +P++ K ASQDSPTRFLFGGLF
Sbjct: 372 AINTFYVRDPSGYPVDSKTIDSIRELIGQTILKVKGSSSPKEQKQASQDSPTRFLFGGLF 431

Query: 358 KSRSFVNFGLVRS 370
           +SRSFVNFGL+RS
Sbjct: 432 RSRSFVNFGLIRS 444

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312281803|dbj|BAJ33767.1| unnamed protein product [Thellungiella halophila]

 Score =  588 bits (1516), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 291/378 (76%), Positives = 326/378 (86%), Gaps = 6/378 (1%)

Query: 1   MDVFNVTDEDGNKITDEGILDYIRKCLGPEACFASSMRSVGVKQSMDHTAIELTGSDRPG 60
           MDVFNVTD+DGNK+TDE +LDYI+K LGPEACF+SSMR+VGV  S D T IELTG DRPG
Sbjct: 74  MDVFNVTDQDGNKVTDEVVLDYIQKSLGPEACFSSSMRTVGVIPSTDSTVIELTGCDRPG 133

Query: 61  LLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVL 120
           LLSE++AVLTHLKC+V++AEVWTHNTRAAA+MQVTD+ TG AISDPERLS IK LL NVL
Sbjct: 134 LLSELTAVLTHLKCSVLNAEVWTHNTRAAAVMQVTDDSTGCAISDPERLSRIKNLLRNVL 193

Query: 121 KGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDS--LDEKQRPNVNVVNCY 178
           KGSN    AKT VSQ   HT+RRLHQMMF DRDYE    DDDS   DE+QRP+V V N  
Sbjct: 194 KGSNTPREAKTVVSQGEVHTDRRLHQMMFEDRDYEHRVVDDDSSIQDERQRPDVCVDNWL 253

Query: 179 DKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKS 238
           DKDYSVVT+  KDRPKL+FDTVCTLTDMQYVVFH ++D +G EAYQEY++RHIDGSPVKS
Sbjct: 254 DKDYSVVTVRCKDRPKLLFDTVCTLTDMQYVVFHGSVDTDGTEAYQEYYVRHIDGSPVKS 313

Query: 239 DAERERVIQCLKAAIERRVSEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSG 298
           +AE++RVIQCL+AAI+RRVSEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEV TK G
Sbjct: 314 EAEKQRVIQCLEAAIKRRVSEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVKTKGG 373

Query: 299 KAVNTFYVGGASGYPVDAKIIDSIRQSIGQTILKVKGNPED----LKSASQDSPTRFLFG 354
           KA+NTFYV  ASGY +DAK +DSIRQ+IGQTILKVK NPE+     KS SQ+SPTRFLFG
Sbjct: 374 KALNTFYVSDASGYSIDAKTLDSIRQTIGQTILKVKNNPEEQQQRQKSPSQESPTRFLFG 433

Query: 355 GLFKSRSFVNFGLVRSCS 372
           GLFKS+SFVNFGLVRS S
Sbjct: 434 GLFKSKSFVNFGLVRSYS 451

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297838675|ref|XP_002887219.1| hypothetical protein ARALYDRAFT_476032 [Arabidopsis lyrata subsp. lyrata] gi|297333060|gb|EFH63478.1| hypothetical protein ARALYDRAFT_476032 [Arabidopsis lyrata subsp. lyrata]

 Score =  583 bits (1504), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 289/378 (76%), Positives = 323/378 (85%), Gaps = 6/378 (1%)

Query: 1   MDVFNVTDEDGNKITDEGILDYIRKCLGPEACFASSMRSVGVKQSMDHTAIELTGSDRPG 60
           MDVFNVTD+DGNK+TDE +LDYI+K LGPEACF++SMRSVGV  S D T IELTG DRPG
Sbjct: 78  MDVFNVTDQDGNKVTDEVVLDYIQKSLGPEACFSTSMRSVGVIPSTDSTVIELTGCDRPG 137

Query: 61  LLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVL 120
           LLSE+SAVLTHLKC+V++AEVWTHNTRAAA+MQVTD+ TG  ISDPERLS IK LL NVL
Sbjct: 138 LLSELSAVLTHLKCSVLNAEVWTHNTRAAAVMQVTDDSTGCGISDPERLSRIKNLLRNVL 197

Query: 121 KGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDS--LDEKQRPNVNVVNCY 178
           KGSN    AKT VS    HT+RRLHQMMF DRDYE    DDDS   DE+QRP+V V N  
Sbjct: 198 KGSNTPREAKTVVSHGEVHTDRRLHQMMFEDRDYEHRLVDDDSSIQDERQRPDVCVDNWL 257

Query: 179 DKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKS 238
           DKDYSVVT+  KDRPKL+FDTVCTLTDMQYVVFH ++D EG EAYQEY++RHIDGSPVKS
Sbjct: 258 DKDYSVVTVRCKDRPKLLFDTVCTLTDMQYVVFHGSVDTEGTEAYQEYYVRHIDGSPVKS 317

Query: 239 DAERERVIQCLKAAIERRVSEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSG 298
           +AE++RVIQCL+AAI+RRVSEGLKLELCT+DRVGLLSNVTRIFRENSLTVTRAEV TK G
Sbjct: 318 EAEKQRVIQCLEAAIKRRVSEGLKLELCTSDRVGLLSNVTRIFRENSLTVTRAEVKTKGG 377

Query: 299 KAVNTFYVGGASGYPVDAKIIDSIRQSIGQTILKVKGNPED----LKSASQDSPTRFLFG 354
           KA+NTFYV  ASGY +DAK IDSIRQ+IGQTILKVK NP++     KS S +SPTRFLFG
Sbjct: 378 KALNTFYVSDASGYSIDAKTIDSIRQTIGQTILKVKNNPQEQQQRQKSPSHESPTRFLFG 437

Query: 355 GLFKSRSFVNFGLVRSCS 372
           GLFKS+SFVNFGLVRS S
Sbjct: 438 GLFKSKSFVNFGLVRSYS 455

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	372
TAIR|locus:2033223	455	ACR4 "ACT domain repeat 4" [Ar	1.0	0.817	0.761	2.1e-148
TAIR|locus:2044289	456	ACR5 "ACT domain repeat 5" [Ar	0.989	0.807	0.687	5.7e-130
TAIR|locus:2078678	433	ACR6 "ACT domain repeat 6" [Ar	0.956	0.822	0.582	2.3e-103
TAIR|locus:2025317	453	ACR3 "ACT domain repeat 3" [Ar	0.889	0.730	0.544	3.5e-91
TAIR|locus:2145482	500	AT5G25320 [Arabidopsis thalian	0.569	0.424	0.473	3.2e-81
TAIR|locus:2034630	441	ACR8 "AT1G12420" [Arabidopsis	0.970	0.818	0.468	2.6e-79
TAIR|locus:2132609	449	ACR7 "ACT domain repeat 7" [Ar	0.862	0.714	0.489	8.4e-74
TAIR|locus:2152094	477	ACR1 "ACT domain repeat 1" [Ar	0.776	0.605	0.417	9.6e-57
TAIR|locus:2057936	410	ACR10 "ACT domain repeats 10"	0.712	0.646	0.219	1.7e-05
TAIR|locus:2015616	290	ACR11 "ACT domain repeats 11"	0.198	0.255	0.324	0.00018

TAIR|locus:2033223 ACR4 "ACT domain repeat 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1449 (515.1 bits), Expect = 2.1e-148, P = 2.1e-148
 Identities = 288/378 (76%), Positives = 323/378 (85%)

Query:     1 MDVFNVTDEDGNKITDEGILDYIRKCLGPEACFASSMRSVGVKQSMDHTAIELTGSDRPG 60
             MDVFNVTD+DGNK+TDE +LDYI+K LGPEACF++SMRSVGV  S D T IELTG DRPG
Sbjct:    78 MDVFNVTDQDGNKVTDEVVLDYIQKSLGPEACFSTSMRSVGVIPSTDSTVIELTGCDRPG 137

Query:    61 LLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVL 120
             LLSE+SAVLTHLKC+V++AE+WTHNTRAAA+MQVTD+ TG  ISDPERLS IK LL NVL
Sbjct:   138 LLSELSAVLTHLKCSVLNAEIWTHNTRAAAVMQVTDDLTGCGISDPERLSRIKNLLRNVL 197

Query:   121 KGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSL--DEKQRPNVNVVNCY 178
             KGSN    AKT VS    HT+RRLHQMMF DRDYE    DDDS   DE+QRP+V V N  
Sbjct:   198 KGSNTPREAKTVVSHGEVHTDRRLHQMMFEDRDYEHRLVDDDSSIQDERQRPDVCVDNWL 257

Query:   179 DKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKS 238
             DKDYSVVT+  KDRPKL+FDTVCTLTDMQYVVFH ++D EG EA+QEY++RHIDGSPVKS
Sbjct:   258 DKDYSVVTVRCKDRPKLLFDTVCTLTDMQYVVFHGSVDTEGTEAFQEYYVRHIDGSPVKS 317

Query:   239 DAERERVIQCLKAAIERRVSEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSG 298
             +AE++RVIQCL+AAI+RRVSEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEV TK G
Sbjct:   318 EAEKQRVIQCLEAAIKRRVSEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVKTKGG 377

Query:   299 KAVNTFYVGGASGYPVDAKIIDSIRQSIGQTILKVKGNPEDL----KSASQDSPTRFLFG 354
             KA+NTFYV  ASGY +DAK IDSIRQ+IGQTILKVK NP++     KS S +SPTRFLFG
Sbjct:   378 KALNTFYVSDASGYSIDAKTIDSIRQTIGQTILKVKNNPQEQQQRQKSPSHESPTRFLFG 437

Query:   355 GLFKSRSFVNFGLVRSCS 372
             GLFKS+SFVNFGLVRS S
Sbjct:   438 GLFKSKSFVNFGLVRSYS 455

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA

GO:0005829 "cytosol" evidence=ISS

GO:0006521 "regulation of cellular amino acid metabolic process" evidence=ISS

GO:0009735 "response to cytokinin stimulus" evidence=IEP

TAIR|locus:2044289 ACR5 "ACT domain repeat 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1275 (453.9 bits), Expect = 5.7e-130, P = 5.7e-130
 Identities = 262/381 (68%), Positives = 312/381 (81%)

Query:     1 MDVFNVTDEDGNKITDEGILDYIRKCLGPE--ACFASSMRS-VGVKQSMDHTAIELTGSD 57
             MDVFNVTD+DGNK+TDE +L+YIRK LGP+  +CF+ SMRS +GVKQS+D+T +ELTG+D
Sbjct:    78 MDVFNVTDQDGNKVTDEIVLEYIRKSLGPDESSCFSPSMRSTIGVKQSVDYTVVELTGTD 137

Query:    58 RPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLC 117
             RPGLLSE+ AVL  L+CNVV+AE+WTH  +AAA++QVTDEET  AI+DPERLS I++LL 
Sbjct:   138 RPGLLSELCAVLMDLQCNVVNAEIWTHRAKAAAVLQVTDEETCSAITDPERLSKIRKLLG 197

Query:   118 NVLKGSNKSGLA----KTEVSQDV--THTERRLHQMMFADRDYERTGTDDDSLDEKQR-- 169
              VL G + SG      KT VS  +  THT+R+LHQ+MFADRDY+    + D  D+  R  
Sbjct:   198 YVLTGGS-SGRRFREPKTTVSSALNETHTDRKLHQLMFADRDYDEWENNVDDEDKCGRVI 256

Query:   170 PNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIR 229
             P+V+V N +D DYS+V I  KDRPKL+FDTV TLTDM YVV HA+IDAEGP+AYQEY+IR
Sbjct:   257 PDVDVSNLHDLDYSIVMIKCKDRPKLLFDTVFTLTDMNYVVSHASIDAEGPQAYQEYYIR 316

Query:   230 HIDGSPVKSDAERERVIQCLKAAIERRVSEGLKLELCTTDRVGLLSNVTRIFRENSLTVT 289
             H DGSPVKS+AER+RVI+CLKAAI+RRVSEGLKLELCT+DRVGLLS+VTRIFRENSLTVT
Sbjct:   317 HTDGSPVKSEAERQRVIKCLKAAIQRRVSEGLKLELCTSDRVGLLSDVTRIFRENSLTVT 376

Query:   290 RAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQTILKVKGNPEDLKSASQDSPT 349
             RAEV TK  KA+NTFYV  ASGY VD K I+SIRQ IGQTIL+VKG   D K + QDSPT
Sbjct:   377 RAEVKTKGDKALNTFYVRDASGYQVDTKTIESIRQVIGQTILQVKGGNTDAKPSPQDSPT 436

Query:   350 RFLFGGLFKSRSFVNFGLVRS 370
              FLFG +FKSRSFVNFGL+RS
Sbjct:   437 GFLFG-VFKSRSFVNFGLIRS 456

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA;ISS

TAIR|locus:2078678 ACR6 "ACT domain repeat 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1024 (365.5 bits), Expect = 2.3e-103, P = 2.3e-103
 Identities = 215/369 (58%), Positives = 270/369 (73%)

Query:     1 MDVFNVTDEDGNKITDEGILDYIRKCLGPEA-CFASSMRS-VGVKQSMDHTAIELTGSDR 58
             MDVF V D+DGNKI D  +LDYI+K +   A  F   +RS VGV  + ++T+IEL G+DR
Sbjct:    69 MDVFKVIDQDGNKIRDTQVLDYIQKRIESNAGWFIPPLRSSVGVMPTDEYTSIELAGTDR 128

Query:    59 PGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCN 118
             PGLLSEVSAVLT L CNVV+AE+WTHNTRAAA++ VTD  T  AI+DP RLS IKELLCN
Sbjct:   129 PGLLSEVSAVLTDLHCNVVNAEIWTHNTRAAAVIHVTDNSTHSAITDPIRLSTIKELLCN 188

Query:   119 VLKGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCY 178
             V++ ++ S  AKT  S   TH ERRLHQ+MF DRDYE       S     RP+V ++N  
Sbjct:   189 VVRTNSGSRAAKTVFSCSDTHRERRLHQIMFDDRDYEGVKRARTSAS---RPSVTLMNI- 244

Query:   179 DKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKS 238
             +KDY+VVT+ SKDRPKLVFD VCTLTDMQYVVFH  +  E  EAYQE++IRH+DG P+ S
Sbjct:   245 EKDYTVVTMRSKDRPKLVFDVVCTLTDMQYVVFHGMVSTEPVEAYQEFYIRHVDGLPINS 304

Query:   239 DAERERVIQCLKAAIERRVSEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSG 298
             +AE+ERVIQCL+AAIERR SEGL+LEL   DRVGLLS++TR FRENSLT+ RAE++T+ G
Sbjct:   305 EAEQERVIQCLEAAIERRASEGLELELSAEDRVGLLSDITRTFRENSLTIVRAEISTREG 364

Query:   299 KAVNTFYVGGASGYPVDAKIIDSIRQSIGQTILKVKGNPEDLKSA------SQDSPTR-F 351
             KA +TFYV   +G PV++KI++SIRQ IG + LKVK   ++  S       S ++ T  +
Sbjct:   365 KAKDTFYVTDVTGNPVESKIVESIRQQIGVSKLKVKKKEKEHCSVLGTSRPSHETTTMGY 424

Query:   352 LFGGLFKSR 360
             L   +FK +
Sbjct:   425 LLSNIFKPK 433

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0019408 "dolichol biosynthetic process" evidence=RCA

TAIR|locus:2025317 ACR3 "ACT domain repeat 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 909 (325.0 bits), Expect = 3.5e-91, P = 3.5e-91
 Identities = 184/338 (54%), Positives = 232/338 (68%)

Query:     1 MDVFNVTDEDGNKITDEGILDYIRKCLGPEACFASSMRS-----VGVKQSMDHTAIELTG 55
             MDVF+VTD+ GNK+TD   +DYI K LGP+   ++S  +     VGV    DHT+IE+  
Sbjct:    76 MDVFHVTDQQGNKVTDSKTIDYIEKVLGPKGHASASQNTWPGKRVGVHSLGDHTSIEIIA 135

Query:    56 SDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKEL 115
              DRPGLLSEVSAVL  L  NVV+AE WTHN R A ++ V D  T  A+ DPERLS ++E 
Sbjct:   136 RDRPGLLSEVSAVLADLNINVVAAEAWTHNRRIACVLYVNDNATSRAVDDPERLSSMEEQ 195

Query:   116 LCNVLKGSNKSG--LAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVN 173
             L NVL+G  +     A+T +S   TH +RRLHQM FADRDYE     DDS      P + 
Sbjct:   196 LNNVLRGCEEQDEKFARTSLSIGSTHVDRRLHQMFFADRDYEAVTKLDDSASCGFEPKIT 255

Query:   174 VVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDG 233
             V +C +K YSV+ ++ +DRPKL+FD VCTLTDMQY+VFHA I + G  A QEYFIRH DG
Sbjct:   256 VEHCEEKGYSVINVSCEDRPKLMFDIVCTLTDMQYIVFHATISSSGSHASQEYFIRHKDG 315

Query:   234 SPVKSDAERERVIQCLKAAIERRVSEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEV 293
               + ++ E+ERV++CL+AAI RRVSEG  LELC  DRVGLLS VTRI RE+ L+V+RA V
Sbjct:   316 CTLDTEGEKERVVKCLEAAIHRRVSEGWSLELCAKDRVGLLSEVTRILREHGLSVSRAGV 375

Query:   294 ATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQTIL 331
              T   +AVN FYV  ASG PVD K I+++R  IG +++
Sbjct:   376 TTVGEQAVNVFYVKDASGNPVDVKTIEALRGEIGHSMM 413

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008773 "[protein-PII

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=TAS

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2145482 AT5G25320 [Arabidopsis thaliana (taxid:3702)]

 Score = 549 (198.3 bits), Expect = 3.2e-81, Sum P(2) = 3.2e-81
 Identities = 106/224 (47%), Positives = 155/224 (69%)

Query:   138 THTERRLHQMMFADRDYERTGTDDDSL----------DEKQRPN--VNVVNCYDKDYSVV 185
             ++ ERRLHQ+M + RD++    +  SL          D K+R    V++ NC ++ YS+V
Sbjct:   240 SNMERRLHQLMLSVRDFDEPFCEPSSLSLLSSKLEYCDHKERKTTIVSIGNCEERGYSIV 299

Query:   186 TITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERV 245
             T+ SKDR +L+FDT+CTL DMQYV+FHA + ++G +A+QEYFIRHIDG  + ++ E+ERV
Sbjct:   300 TVKSKDRRRLMFDTICTLVDMQYVIFHAALRSDGADAFQEYFIRHIDGRALNTEGEKERV 359

Query:   246 IQCLKAAIERRVSEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFY 305
             I+CL+AAIERRV EG+KLELC  +RVGLLS++TR+ REN LTV RA+V T+  K++N FY
Sbjct:   360 IKCLEAAIERRVCEGVKLELCAENRVGLLSDITRVLRENGLTVVRADVETQGQKSLNAFY 419

Query:   306 VGGASGYPVDAKIIDSIRQSIGQTILKVKGNPEDLKSASQDSPT 349
             V   SG  +D + ++S+++ +    L+VK     + +   D PT
Sbjct:   420 VRDISGNKIDMEFVESVKKEMRPIHLEVKNEDTKIDTVGSDEPT 463

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

TAIR|locus:2034630 ACR8 "AT1G12420" [Arabidopsis thaliana (taxid:3702)]

 Score = 797 (285.6 bits), Expect = 2.6e-79, P = 2.6e-79
 Identities = 178/380 (46%), Positives = 240/380 (63%)

Query:     1 MDVFNVTDEDGNKITDEGILDYIRKCLGPEACFASSMRSVGVKQSMDHTAIELTGSDRPG 60
             MDVF+VTD +GNK+ D+ +L YI + +     +  ++   G+      TA+ELTG+DR G
Sbjct:    73 MDVFHVTDLNGNKLNDQSVLRYIEQSI-ETVYYGENIEVNGL------TALELTGTDRIG 125

Query:    61 LLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVL 120
             LLSE+ AVL+ L C+VV A++WTHN R A+++ + D  +G  I D  R+S I+  L NVL
Sbjct:   126 LLSEMFAVLSDLNCDVVDAKLWTHNGRVASVIYLKDCISGAPILDSHRISKIEGRLKNVL 185

Query:   121 KGSNK-SGLAKTEVSQD-VTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCY 178
              G N  +  AKT V+ D + H ERRLHQ+MF DRDYER     +         V V N  
Sbjct:   186 NGDNDVNSAAKTCVTVDSMMHIERRLHQLMFEDRDYERRSKKHE---RSPMVVVTVQNWA 242

Query:   179 DKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKS 238
             ++ YSVV +  +DR KL+FD VCTLTDM+Y VFHA I+    +A+ E++IRH DGSP+ S
Sbjct:   243 ERGYSVVNVHCRDRTKLLFDVVCTLTDMEYAVFHATINTAEDQAHLEFYIRHKDGSPISS 302

Query:   239 DAERERVIQCLKAAIERRVSEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSG 298
             +AER+RVIQCL+AA+ERR  EG++LEL   D+ GLL+ VTR FREN L VTR E++T S 
Sbjct:   303 EAERQRVIQCLEAAVERRALEGVRLELRHPDKQGLLAEVTRTFRENGLNVTRTEISTSSD 362

Query:   299 KAVNTFYVGGASGYPVDAKIIDSIRQSIGQTILKVKGNPE------DLKSASQDSPTRFL 352
              A N FYV  A+G   D K+I+S+R+ IG   L+VK  P       D +   Q       
Sbjct:   363 MATNIFYVTDANGDEPDFKLIESVREKIGLECLRVKEMPTMYHKKGDGEEQQQTKAVLVS 422

Query:   353 FGGLFKSRSFVNFGLVRSCS 372
              G L   R+  NFGL++SCS
Sbjct:   423 LGSLVW-RNLFNFGLIKSCS 441

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

TAIR|locus:2132609 ACR7 "ACT domain repeat 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 745 (267.3 bits), Expect = 8.4e-74, P = 8.4e-74
 Identities = 165/337 (48%), Positives = 220/337 (65%)

Query:     1 MDVFNVTDEDGNKITDEGILDYIRKCLGPEACFASSMRSVGVKQSMDHTAIELTGSDRPG 60
             MDVF+V+D +G+K+TDE ++ YI K +   + +  +    G+      TA+ELTG+DR G
Sbjct:    73 MDVFHVSDLNGDKLTDENLIRYIEKSI-ETSHYCKTEGYTGL------TALELTGTDRVG 125

Query:    61 LLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAIS-DPERLSVIKELLCNV 119
             LLSEV AVL  L+C+VV A+ WTHN R A+++ V D  +G  I  D +R+  ++  L N+
Sbjct:   126 LLSEVFAVLADLECDVVEAKAWTHNGRIASMIYVKDGNSGTPIDGDSDRVQRVEGQLRNL 185

Query:   120 LKGSNK-SGLAKTEVSQDV-THTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNC 177
             LK  +      +T VS    TH ERRLHQ MF DRDYE+        D ++ P V+V N 
Sbjct:   186 LKADDGYQNDTRTCVSYGGNTHMERRLHQRMFMDRDYEK------KFDIEKSPIVSVQNL 239

Query:   178 YDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVK 237
               + YSVV +  KDR KL+FD VCTLTDM Y+VFHA I   G  A+ E+++RH DG PV 
Sbjct:   240 PKRGYSVVNLQCKDRMKLLFDVVCTLTDMAYIVFHAAIRTVGETAFLEFYVRHSDGHPVS 299

Query:   238 SDAERERVIQCLKAAIERRVSEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKS 297
             S+ ER+R+IQCL+AAIERR  +G++LELCT DR GLL+ VTRI REN L + RAE++TK 
Sbjct:   300 SEPERQRLIQCLQAAIERRTVKGVRLELCTADRPGLLAEVTRILRENGLNIARAEISTKD 359

Query:   298 GKAVNTFYVGGASGYPVDAKIIDSIRQSIGQTILKVK 334
               A N FYV  A+G  +D +II SIR+ IG   L VK
Sbjct:   360 SIARNVFYVTDANGNLIDPEIIKSIREKIGIDDLSVK 396

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=ISS

TAIR|locus:2152094 ACR1 "ACT domain repeat 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
 Identities = 129/309 (41%), Positives = 195/309 (63%)

Query:    45 SMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAIS 104
             S +HTA E+TG +RPGLLSE+SAVL+ + C+V +A  WTH+ RAA ++ + D   GG I 
Sbjct:   129 STEHTAFEITGINRPGLLSEISAVLSDIGCHVTAAVAWTHHERAAMVIYLEDGFNGGPII 188

Query:   105 DPERLSVIKELLCNVLKGSNKSG-----LAKTEVSQDV----THTERRLHQMMFADRDYE 155
             DP R + +K+ L  V++  +  G     + +   ++ V     HTERRLH++M+ + DYE
Sbjct:   189 DPIRKAQVKDHLDTVMEAHHIVGDVSHVVVRVVEAKGVPVGWAHTERRLHELMYGEGDYE 248

Query:   156 RT------GTDDDSL--DEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQ 207
                     G   D+L     +R +V +  C    YS+V +  +DRPKL+FDTVC L ++Q
Sbjct:   249 NCFDCDCFGDRCDALWRGRCERIHVTIEAC--NGYSMVNVKCRDRPKLLFDTVCALKELQ 306

Query:   208 YVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRVSEGLKLELCT 267
             +VVFHA   A+G  A QEYFIR  +G  ++++ +RER+  CL AAI RR S+GLKLE+ T
Sbjct:   307 FVVFHAVAGAKGSTAEQEYFIRKKNGGTLETEGQRERLRHCLVAAISRRASQGLKLEIRT 366

Query:   268 TDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIG 327
              +++GLLS+VTR+ REN L++TRAE+ T+   AV +FYV   +G       ++++ + +G
Sbjct:   367 ENKMGLLSDVTRVVRENGLSITRAEMCTQGEIAVGSFYVTDVNGGETGPSEVEAVVRELG 426

Query:   328 QTILK-VKG 335
               ++  VKG
Sbjct:   427 GAVVSAVKG 435

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISS

TAIR|locus:2057936 ACR10 "ACT domain repeats 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 130 (50.8 bits), Expect = 1.7e-05, P = 1.7e-05
 Identities = 62/282 (21%), Positives = 120/282 (42%)

Query:    28 GPEACFASSMRSVGVKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEV-WTHNT 86
             G   C+ S   S   K   D   ++L  SDR GLL +V+ VL  L+ N+   ++  T + 
Sbjct:    93 GISRCYLSDSESQPPKLP-DLFLLKLACSDRTGLLYDVTEVLYKLEINIEKVKISTTPDG 151

Query:    87 RAAALMQVTDEETGGAISDPERLSVIKELLCNVLKGSNKSGLAKTEVSQDVT--HTERRL 144
             +   L  VTD  T   +   +R + + E L + + G +        V  ++T   T   +
Sbjct:   152 KVMDLFFVTD--TRELLGTVKRRNEVYEYLRDAI-GDSMISYDIELVGPEITACSTSSSV 208

Query:   145 HQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLT 204
              + +F+    + +G     L      ++ V N     ++++ IT +D   L++D + T  
Sbjct:   209 AETLFSS---DVSGEHSSGLHTSSNVSIAVDNSLSSAHTLIHITCQDHKGLLYDIMRTFK 265

Query:   205 DMQYVVFHANIDAE-GPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER--RV---S 258
             D    + +     + G     + FI   DG  +   ++   +I  L+A +++  RV   +
Sbjct:   266 DFNIQISYGRFTIKLGKNCEIDLFIVQSDGRKILDSSKLNALITRLRAELQQPLRVVMMN 325

Query:   259 EGLKLELCTTDRVGLLSNVT-RIFRENSLTVTRAEVATKSGK 299
              G   EL  T+ V L      ++F + +L + + +    S +
Sbjct:   326 RGPDTELLVTNPVELSGKGRPQVFHDIALALKKIDTCIFSAE 367

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2015616 ACR11 "ACT domain repeats 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 95 (38.5 bits), Expect = 0.00018, Sum P(2) = 0.00018
 Identities = 24/74 (32%), Positives = 37/74 (50%)

Query:    47 DHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDP 106
             D T +E+T  DR G L +    L +L  NVV A V+  ++       +T  ++G  + DP
Sbjct:    95 DATVLEVTFGDRLGALLDTMNALKNLGLNVVKANVYLDSSGKHNKFAITRADSGRKVEDP 154

Query:   107 ERLSVIKELLCNVL 120
             E L  I+  + N L
Sbjct:   155 ELLEAIRLTVINNL 168

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009409 "response to cold" evidence=IEP;RCA

GO:0010319 "stromule" evidence=IDA

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009744 "response to sucrose stimulus" evidence=IEP

GO:0006833 "water transport" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	372
cd04897	75	cd04897, ACT_ACR_3, ACT domain-containing protein	2e-39
cd04925	74	cd04925, ACT_ACR_2, ACT domain-containing protein	6e-34
cd04926	72	cd04926, ACT_ACR_4, C-terminal ACT domain, of a no	5e-31
cd04899	70	cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domain	1e-19
cd04899	70	cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domain	4e-19
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	6e-16
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	1e-14
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	7e-12
PRK05092	931	PRK05092, PRK05092, PII uridylyl-transferase; Prov	2e-09
TIGR01693	850	TIGR01693, UTase_glnD, [Protein-PII] uridylyltrans	1e-08
COG2844	867	COG2844, GlnD, UTP:GlnB (protein PII) uridylyltran	4e-08
PRK05092	931	PRK05092, PRK05092, PII uridylyl-transferase; Prov	1e-07
cd04895	72	cd04895, ACT_ACR_1, ACT domain-containing protein	3e-07
TIGR01693	850	TIGR01693, UTase_glnD, [Protein-PII] uridylyltrans	9e-07
TIGR01693	850	TIGR01693, UTase_glnD, [Protein-PII] uridylyltrans	2e-06
COG2844	867	COG2844, GlnD, UTP:GlnB (protein PII) uridylyltran	3e-06
PRK01759	854	PRK01759, glnD, PII uridylyl-transferase; Provisio	3e-06
cd04900	73	cd04900, ACT_UUR-like_1, ACT domain family, ACT_UU	5e-06
PRK00275	895	PRK00275, glnD, PII uridylyl-transferase; Provisio	6e-06
PRK03381	774	PRK03381, PRK03381, PII uridylyl-transferase; Prov	9e-06
PRK05092	931	PRK05092, PRK05092, PII uridylyl-transferase; Prov	3e-05
cd02116	60	cd02116, ACT, ACT domains are commonly involved in	3e-05
pfam01842	66	pfam01842, ACT, ACT domain	5e-05
cd04876	71	cd04876, ACT_RelA-SpoT, ACT domain found C-termina	8e-05
TIGR01693	850	TIGR01693, UTase_glnD, [Protein-PII] uridylyltrans	1e-04
PRK00275	895	PRK00275, glnD, PII uridylyl-transferase; Provisio	2e-04
PRK03381	774	PRK03381, PRK03381, PII uridylyl-transferase; Prov	2e-04
PRK01759	854	PRK01759, glnD, PII uridylyl-transferase; Provisio	3e-04
cd04900	73	cd04900, ACT_UUR-like_1, ACT domain family, ACT_UU	0.001
cd04926	72	cd04926, ACT_ACR_4, C-terminal ACT domain, of a no	0.002
pfam13740	76	pfam13740, ACT_6, ACT domain	0.002
PRK04374	869	PRK04374, PRK04374, PII uridylyl-transferase; Prov	0.002
cd04893	77	cd04893, ACT_GcvR_1, ACT domains that comprise the	0.003
COG2844	867	COG2844, GlnD, UTP:GlnB (protein PII) uridylyltran	0.004

>gnl|CDD|153169 cd04897, ACT_ACR_3, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score =  134 bits (338), Expect = 2e-39
 Identities = 50/75 (66%), Positives = 63/75 (84%)

Query: 182 YSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAE 241
           YSVVT+  +DRPKL+FD VCTLTDM YVVFHA ID +G +A+QEY+IRH DG  + ++ E
Sbjct: 1   YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGE 60

Query: 242 RERVIQCLKAAIERR 256
           R+RVI+CL+AAIERR
Sbjct: 61  RQRVIKCLEAAIERR 75

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 75

>gnl|CDD|153197 cd04925, ACT_ACR_2, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score =  120 bits (302), Expect = 6e-34
 Identities = 48/74 (64%), Positives = 55/74 (74%)

Query: 49  TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPER 108
           TAIELTG+DRPGLLSEV AVL  L CNVV A  WTHN R A ++ V DEETG  I DP R
Sbjct: 1   TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIR 60

Query: 109 LSVIKELLCNVLKG 122
           L+ I++ L NVL+G
Sbjct: 61  LASIEDRLDNVLRG 74

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 74

>gnl|CDD|153198 cd04926, ACT_ACR_4, C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score =  112 bits (282), Expect = 5e-31
 Identities = 45/72 (62%), Positives = 56/72 (77%)

Query: 260 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKII 319
           G++LEL T DRVGLLS+VTR+FREN LTVTRAE++T+   AVN FYV  A+G PVD K I
Sbjct: 1   GVRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPVDPKTI 60

Query: 320 DSIRQSIGQTIL 331
           +++RQ IG   L
Sbjct: 61  EAVRQEIGPACL 72

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

>gnl|CDD|153171 cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 81.3 bits (202), Expect = 1e-19
 Identities = 26/68 (38%), Positives = 43/68 (63%)

Query: 263 LELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSI 322
           LEL   DR GLL++VTR+  E  L +  A++AT   +A + FYV  A G P+D +  +++
Sbjct: 3   LELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPLDPERQEAL 62

Query: 323 RQSIGQTI 330
           R ++G+ +
Sbjct: 63  RAALGEAL 70

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|153171 cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 80.2 bits (199), Expect = 4e-19
 Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 49  TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPER 108
           T +ELT  DRPGLL++V+ VL  L  N+ SA++ T   RA  +  VTD +      DPER
Sbjct: 1   TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQP--LDPER 58

Query: 109 LSVIKELLCNVL 120
              ++  L   L
Sbjct: 59  QEALRAALGEAL 70

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 71.4 bits (176), Expect = 6e-16
 Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 2/72 (2%)

Query: 49  TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPER 108
           T +E+   DRPGLL++++ VL  L  N+  A + T   RA  +  VTD +  G   DPER
Sbjct: 1   TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSD--GRPLDPER 58

Query: 109 LSVIKELLCNVL 120
           ++ ++E L + L
Sbjct: 59  IARLEEALEDAL 70

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 68.0 bits (167), Expect = 1e-14
 Identities = 19/68 (27%), Positives = 40/68 (58%)

Query: 263 LELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSI 322
           +E+   DR GLL+++TR+  +  L +  A ++T   +A++ FYV  + G P+D + I  +
Sbjct: 3   VEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPLDPERIARL 62

Query: 323 RQSIGQTI 330
            +++   +
Sbjct: 63  EEALEDAL 70

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 59.9 bits (146), Expect = 7e-12
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 1/71 (1%)

Query: 183 SVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAER 242
           +VV + + DRP L+ D    L D+   +  A I   G  A   +++   DG P+      
Sbjct: 1   TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPL-DPERI 59

Query: 243 ERVIQCLKAAI 253
            R+ + L+ A+
Sbjct: 60  ARLEEALEDAL 70

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|235342 PRK05092, PRK05092, PII uridylyl-transferase; Provisional

 Score = 58.7 bits (143), Expect = 2e-09
 Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 1/78 (1%)

Query: 45  SMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAIS 104
           S   T IE+ G DRPGLL +++  L+ L  N+ SA + T+  RA  +  VTD   G  I+
Sbjct: 840 SNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTD-LFGLKIT 898

Query: 105 DPERLSVIKELLCNVLKG 122
           +  R + I+  L   L  
Sbjct: 899 NEARQAAIRRALLAALAE 916

Length = 931

>gnl|CDD|233534 TIGR01693, UTase_glnD, [Protein-PII] uridylyltransferase

 Score = 56.3 bits (136), Expect = 1e-08
 Identities = 41/217 (18%), Positives = 83/217 (38%), Gaps = 26/217 (11%)

Query: 40  VGVKQSMDHTAIELT--GSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDE 97
             +  +      E+     D+PGL ++V+  L  L  +V  A+V T     A    V  +
Sbjct: 658 ALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQD 717

Query: 98  ETGGAISDPERLSVIKELLCNVLKGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERT 157
             G   +       + + L +VL  +  +    T  +       RRL             
Sbjct: 718 LFGSPPAAERVFQELLQGLVDVL--AGLAKDPDTISA--RRARRRRLQHFAVP------- 766

Query: 158 GTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDA 217
                       P V ++N   +  +++ + + DRP L+     TL ++   +  A I  
Sbjct: 767 ------------PRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITT 814

Query: 218 EGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIE 254
            G +A   +++  + G  + +D E +R+++ L A++ 
Sbjct: 815 FGEKAEDVFYVTDLFGLKL-TDEEEQRLLEVLAASVA 850

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]. Length = 850

>gnl|CDD|225400 COG2844, GlnD, UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 55.1 bits (133), Expect = 4e-08
 Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 1/73 (1%)

Query: 44  QSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAI 103
            S D T +E+   DRPGLL+ ++ V   L  ++ SA++ T   R   +  VTD + G A+
Sbjct: 787 ASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTDAD-GQAL 845

Query: 104 SDPERLSVIKELL 116
           +   R S+++ LL
Sbjct: 846 NAELRQSLLQRLL 858

Length = 867

>gnl|CDD|235342 PRK05092, PRK05092, PII uridylyl-transferase; Provisional

 Score = 53.3 bits (129), Expect = 1e-07
 Identities = 47/222 (21%), Positives = 90/222 (40%), Gaps = 37/222 (16%)

Query: 47  DHTAIELT--GSDRPGLLSEVSAVLTHLKCNVVSAEVWT-HNTRAAALMQVTDEETGGAI 103
                E+T   +D PGL S ++        N+V A ++T  + RA     + D   G   
Sbjct: 729 ARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAF-GRDE 787

Query: 104 SDPERLSVIKELLCNVLKGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDS 163
            +P RL+ + + + + L G                  E RL + + A R   +       
Sbjct: 788 DEPRRLARLAKAIEDALSG------------------EVRLPEAL-AKRTKPKK------ 822

Query: 164 LDEKQR-----PNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE 218
              + R     P V + N     ++V+ +  +DRP L++D    L+D+   +  A+I   
Sbjct: 823 ---RARAFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATY 879

Query: 219 GPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRVSEG 260
           G  A   +++  + G  + ++A +  + + L AA+    +E 
Sbjct: 880 GERAVDVFYVTDLFGLKITNEARQAAIRRALLAALAEGEAEA 921

Length = 931

>gnl|CDD|153167 cd04895, ACT_ACR_1, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score = 47.1 bits (112), Expect = 3e-07
 Identities = 17/31 (54%), Positives = 23/31 (74%)

Query: 1  MDVFNVTDEDGNKITDEGILDYIRKCLGPEA 31
          MDVF+VTD+ GNK+TD+ ++ YI K LG   
Sbjct: 42 MDVFHVTDQLGNKLTDDSLIAYIEKSLGTSR 72

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

>gnl|CDD|233534 TIGR01693, UTase_glnD, [Protein-PII] uridylyltransferase

 Score = 50.5 bits (121), Expect = 9e-07
 Identities = 33/130 (25%), Positives = 51/130 (39%), Gaps = 23/130 (17%)

Query: 1   MDVFNVTDEDGNKITDE----GILDYIRKCLG-----PEACFASSMRSVGVKQ------- 44
           +D F V D  G+    E     +L  +   L      P+   A   R   ++        
Sbjct: 710 LDTFVVQDLFGSPPAAERVFQELLQGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPRV 769

Query: 45  ------SMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEE 98
                 S   T +E+   DRPGLL+ V   L  L  ++ SA++ T   +A  +  VTD  
Sbjct: 770 TILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLF 829

Query: 99  TGGAISDPER 108
            G  ++D E 
Sbjct: 830 -GLKLTDEEE 838

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]. Length = 850

>gnl|CDD|233534 TIGR01693, UTase_glnD, [Protein-PII] uridylyltransferase

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 34/179 (18%), Positives = 66/179 (36%), Gaps = 33/179 (18%)

Query: 185 VTITSKDRPKLVFDTVCTLTDMQYVVFHANIDA-EGPEAYQEYFIRHIDGSPVKSDAERE 243
           V I + D+P L       L  +   V  A ++  +   A   + ++ + GSP  ++   +
Sbjct: 671 VFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQ 730

Query: 244 RVIQCLKAAIE------------RRVSEGLK--------------------LELCTTDRV 271
            ++Q L   +             R     L+                    +E+   DR 
Sbjct: 731 ELLQGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPRVTILNTASRKATIMEVRALDRP 790

Query: 272 GLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQTI 330
           GLL+ V R   E  L++  A++ T   KA + FYV    G  +  +    + + +  ++
Sbjct: 791 GLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFGLKLTDEEEQRLLEVLAASV 849

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]. Length = 850

>gnl|CDD|225400 COG2844, GlnD, UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 38/181 (20%), Positives = 68/181 (37%), Gaps = 29/181 (16%)

Query: 185 VTITSKDRPKLVFDTVCTLTDMQYVVFHANID-AEGPEAYQEYFIRHIDGSPVKSDAERE 243
           V + + DRP+L       L+     +  A I       A   + +   DG PV+ D    
Sbjct: 687 VFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVEEDRRAA 746

Query: 244 RV---IQCLK-----AAIERRVSEGLK--------------------LELCTTDRVGLLS 275
                I+ L          RR+   L+                    LE+   DR GLL+
Sbjct: 747 LRGELIEALLSGKAQPPRRRRIPRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLA 806

Query: 276 NVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQTILKVKG 335
            +  +F +  L++  A++ T   +  + F V  A G  ++A++  S+ Q + + +L    
Sbjct: 807 ALAGVFADLGLSLHSAKITTFGERVEDVFIVTDADGQALNAELRQSLLQRLLEALLPNDE 866

Query: 336 N 336
            
Sbjct: 867 G 867

Length = 867

>gnl|CDD|234980 PRK01759, glnD, PII uridylyl-transferase; Provisional

 Score = 49.0 bits (117), Expect = 3e-06
 Identities = 24/73 (32%), Positives = 44/73 (60%), Gaps = 1/73 (1%)

Query: 47  DHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDP 106
           + T +EL   DR GLL++VS V + L  N+++A++ T   +A     +T+++ G A+ + 
Sbjct: 782 EQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQQ-GQALDEE 840

Query: 107 ERLSVIKELLCNV 119
           ER ++   LL N+
Sbjct: 841 ERKALKSRLLSNL 853

Length = 854

>gnl|CDD|153172 cd04900, ACT_UUR-like_1, ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 43.6 bits (104), Expect = 5e-06
 Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 6/67 (8%)

Query: 57  DRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRA-AAL--MQVTDEETGGAISDPERLSVIK 113
           DRPGL + ++  L  L  N++ A +    TR   AL    V D + G  I + ERL+ I+
Sbjct: 10  DRPGLFARIAGALDQLGLNILDARI--FTTRDGYALDTFVVLDPD-GEPIGERERLARIR 66

Query: 114 ELLCNVL 120
           E L + L
Sbjct: 67  EALEDAL 73

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 73

>gnl|CDD|234709 PRK00275, glnD, PII uridylyl-transferase; Provisional

 Score = 47.7 bits (114), Expect = 6e-06
 Identities = 40/190 (21%), Positives = 75/190 (39%), Gaps = 34/190 (17%)

Query: 182 YSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANI-DAEGPEAYQEYFIRHIDGSPVKSDA 240
            + + I + D+      TV  +  +   +  A I  +        Y +   DG P+  + 
Sbjct: 704 GTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNP 763

Query: 241 ER-----ERVIQCLK------AAIERRVSEGLK--------------------LELCTTD 269
            R     E + + L+        I+RRV   LK                    LE+   D
Sbjct: 764 ARIEQIREGLTEALRNPDDYPTIIQRRVPRQLKHFAFPTQVTISNDAQRPVTVLEIIAPD 823

Query: 270 RVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPV-DAKIIDSIRQSIGQ 328
           R GLL+ + RIF E  L++  A++AT   +  + F++  A   P+ D ++   ++ +I +
Sbjct: 824 RPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQDAICE 883

Query: 329 TILKVKGNPE 338
             L  +   +
Sbjct: 884 Q-LDARNEKD 892

Length = 895

>gnl|CDD|235123 PRK03381, PRK03381, PII uridylyl-transferase; Provisional

 Score = 47.3 bits (113), Expect = 9e-06
 Identities = 39/166 (23%), Positives = 61/166 (36%), Gaps = 30/166 (18%)

Query: 179 DKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKS 238
           D     VT+ + DR  L+      L   +  V  A++ +    A  E+ +    GSP  +
Sbjct: 596 DPHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRFGSPPDA 655

Query: 239 DAERERVIQCLK------AAIERRVSEGLK------------------------LELCTT 268
              R+ + + L       A +  R +                            LE+   
Sbjct: 656 ALLRQDLRRALDGDLDVLARLAAREAAAAAVPVRRPAAPPRVLWLDGASPDATVLEVRAA 715

Query: 269 DRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPV 314
           DR GLL+ + R      + V  A VAT     V+ FYV GA+G P+
Sbjct: 716 DRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGAAGGPL 761

Length = 774

>gnl|CDD|235342 PRK05092, PRK05092, PII uridylyl-transferase; Provisional

 Score = 45.6 bits (109), Expect = 3e-05
 Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 5/89 (5%)

Query: 263 LELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSI 322
           +E+   DR GLL ++TR   + +L +  A +AT   +AV+ FYV    G     KI +  
Sbjct: 846 IEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDLFG----LKITNEA 901

Query: 323 RQ-SIGQTILKVKGNPEDLKSASQDSPTR 350
           RQ +I + +L      E    A++     
Sbjct: 902 RQAAIRRALLAALAEGEAEARAARPPGAV 930

Length = 931

>gnl|CDD|153139 cd02116, ACT, ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

 Score = 41.1 bits (97), Expect = 3e-05
 Identities = 15/45 (33%), Positives = 24/45 (53%)

Query: 51 IELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVT 95
          + ++G DRPGLL++V +VL     N+ S E  T      A + + 
Sbjct: 1  LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIV 45

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-prephenate dehydratase enzyme (P-protein), respectively. Aspartokinases typically consist of two C-terminal ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. ACT domain repeats have been shown to have nonequivalent ligand-binding sites with complex regulatory patterns such as those seen in the bifunctional enzyme, aspartokinase-homoserine dehydrogenase (ThrA). In other enzymes, such as phenylalanine hydroxylases, the ACT domain appears to function as a flexible small module providing allosteric regulation via transmission of conformational changes, these conformational changes are not necessarily initiated by regulatory ligand binding at the ACT domain itself. ACT domains are present either singularly, N- or C-terminal, or in pairs present C-terminal or between two catalytic domains. Unique to cyanobacteria are four ACT domains C-terminal to an aspartokinase domain. A few proteins are composed almost entirely of ACT domain repeats as seen in the four ACT domain protein, the ACR protein, found in higher plants; and the two ACT domain protein, the glycine cleavage system transcriptional repressor (GcvR) protein, found in some bacteria. Also seen are single ACT domain proteins similar to the Streptococcus pneumoniae ACT domain protein (uncharacterized pdb structure 1ZPV) found in both bacteria and archaea. Purportedly, the ACT domain is an evolutionarily mobile ligand binding regulatory module that has been fused to different enzymes at various times. Length = 60

>gnl|CDD|190133 pfam01842, ACT, ACT domain

 Score = 40.4 bits (95), Expect = 5e-05
 Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 3/68 (4%)

Query: 49  TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPER 108
           T +E+   DRPGLL+EV   L     N+ S    T   +A     V              
Sbjct: 1   TVLEVGVPDRPGLLAEVFGALADRGINIESISQSTSGDKA---GIVFIVVVVDEEDLEAA 57

Query: 109 LSVIKELL 116
           L  +K+LL
Sbjct: 58  LEALKKLL 65

This family of domains generally have a regulatory role. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. The ACT domain is found in: D-3-phosphoglycerate dehydrogenase EC:1.1.1.95, which is inhibited by serine. Aspartokinase EC:2.7.2.4, which is regulated by lysine. Acetolactate synthase small regulatory subunit, which is inhibited by valine. Phenylalanine-4-hydroxylase EC:1.14.16.1, which is regulated by phenylalanine. Prephenate dehydrogenase EC:4.2.1.51. formyltetrahydrofolate deformylase EC:3.5.1.10, which is activated by methionine and inhibited by glycine. GTP pyrophosphokinase EC:2.7.6.5. Length = 66

>gnl|CDD|153148 cd04876, ACT_RelA-SpoT, ACT domain found C-terminal of the RelA/SpoT domains

 Score = 40.1 bits (95), Expect = 8e-05
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 8/63 (12%)

Query: 51  IELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRA-AALMQVTDEETGGAISDPERL 109
           I +   DRPGLL++++ V+   K N++S  V T       A +++T E     + D E L
Sbjct: 1   IRVEAIDRPGLLADITTVIAEEKINILS--VNTRTDDDGLATIRLTLE-----VRDLEHL 53

Query: 110 SVI 112
           + I
Sbjct: 54  ARI 56

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes in E. coli, a bifunctional Rel/Spo protein has been discovered in most gram-positive organisms studied so far. These bifunctional Rel/Spo homologs (rsh) appear to modulate (p)ppGpp levels through two distinct active sites that are controlled by a reciprocal regulatory mechanism ensuring inverse coupling of opposing activities. In studies with the Streptococcus equisimilis Rel/Spo homolog, the C-terminal domain appears to be involved in this reciprocal regulation of the two opposing catalytic activities present in the N-terminal domain, ensuring that both synthesis and degradation activities are not coinduced. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 71

>gnl|CDD|233534 TIGR01693, UTase_glnD, [Protein-PII] uridylyltransferase

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 32/123 (26%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 222 AYQEYFIRHIDGSPV---KSDAERERVIQCLKAAIERRVSEGLKLELCTTDRVGLLSNVT 278
           AY +YF+R          +S          L      R S G ++ +   D+ GL + V 
Sbjct: 627 AYDDYFLRFTHKEIAWHAESLRRALSSGGPLALIDGTRPSGGTEVFIYAPDQPGLFAKVA 686

Query: 279 RIFRENSLTVTRAEV-ATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQTILKVKGNP 337
                 SL+V  A+V  TK G A++TF V    G P  A   + + Q + Q ++ V    
Sbjct: 687 GALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAA---ERVFQELLQGLVDVLAGL 743

Query: 338 EDL 340
              
Sbjct: 744 AKD 746

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]. Length = 850

>gnl|CDD|234709 PRK00275, glnD, PII uridylyl-transferase; Provisional

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 1/83 (1%)

Query: 47  DHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDP 106
             T +E+   DRPGLL+ +  +      ++ +A++ T   R   +  +TD +    +SDP
Sbjct: 813 PVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDAD-NQPLSDP 871

Query: 107 ERLSVIKELLCNVLKGSNKSGLA 129
           +  S +++ +C  L   N+   +
Sbjct: 872 QLCSRLQDAICEQLDARNEKDTS 894

Length = 895

>gnl|CDD|235123 PRK03381, PRK03381, PII uridylyl-transferase; Provisional

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 2/70 (2%)

Query: 252 AIERRVSEGLKLEL--CTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGA 309
            +E   ++   +E+     DR GLLS    +   + L V  A V +  G AV  F V   
Sbjct: 589 HVEIAPADPHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPR 648

Query: 310 SGYPVDAKII 319
            G P DA ++
Sbjct: 649 FGSPPDAALL 658

Length = 774

>gnl|CDD|234980 PRK01759, glnD, PII uridylyl-transferase; Provisional

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 34/171 (19%), Positives = 67/171 (39%), Gaps = 28/171 (16%)

Query: 164 LDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANI-DAEGPEA 222
           LD +    V + N + +  + + I  +D+  L    V T+   +  +  A I  ++    
Sbjct: 659 LDFRGDLLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYV 718

Query: 223 YQEYFIRHIDGSPVKSDAERE---RVIQCLKAAIE--RRVSEGLKL-------------- 263
              + +  ++G  ++ D  R+    + + L         + E  KL              
Sbjct: 719 LDSFIVTELNGKLLEFDRRRQLEQALTKALNTNKLKKLNLEENHKLQHFHVKTEVRFLNE 778

Query: 264 --------ELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYV 306
                   EL   DR GLL+ V+++F E +L +  A++ T   KA + F +
Sbjct: 779 EKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFIL 829

Length = 854

>gnl|CDD|153172 cd04900, ACT_UUR-like_1, ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 37.1 bits (87), Expect = 0.001
 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 2/67 (2%)

Query: 266 CTTDRVGLLSNVTRIFRENSLTVTRAEV-ATKSGKAVNTFYVGGASGYPVDA-KIIDSIR 323
            T DR GL + +     +  L +  A +  T+ G A++TF V    G P+   + +  IR
Sbjct: 7   YTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIR 66

Query: 324 QSIGQTI 330
           +++   +
Sbjct: 67  EALEDAL 73

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 73

>gnl|CDD|153198 cd04926, ACT_ACR_4, C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score = 36.2 bits (84), Expect = 0.002
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 2/65 (3%)

Query: 50  AIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERL 109
            +EL   DR GLLS+V+ V       V  AE+ T    A  +  VTD   G  + DP+ +
Sbjct: 3   RLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTD-ANGNPV-DPKTI 60

Query: 110 SVIKE 114
             +++
Sbjct: 61  EAVRQ 65

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

>gnl|CDD|205914 pfam13740, ACT_6, ACT domain

 Score = 36.3 bits (85), Expect = 0.002
 Identities = 14/45 (31%), Positives = 21/45 (46%)

Query: 51 IELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVT 95
          I  TG DRPGL + ++ VL    CN++ +            M V+
Sbjct: 5  ITATGPDRPGLTASLTRVLAEHGCNILDSRQAVIGGELTLGMLVS 49

ACT domains bind to amino acids and regulate associated enzyme domains. Length = 76

>gnl|CDD|179839 PRK04374, PRK04374, PII uridylyl-transferase; Provisional

 Score = 39.6 bits (92), Expect = 0.002
 Identities = 21/49 (42%), Positives = 26/49 (53%)

Query: 49  TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDE 97
           T I L   DRPGLL++V+ VL      V  A + T   RA    Q+TDE
Sbjct: 797 TRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITDE 845

Length = 869

>gnl|CDD|153165 cd04893, ACT_GcvR_1, ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

 Score = 35.8 bits (83), Expect = 0.003
 Identities = 15/48 (31%), Positives = 26/48 (54%)

Query: 48 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVT 95
          H  I   G+DRPG+L+E++  ++   CN++ + +    T  A  M V 
Sbjct: 1  HLVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVE 48

This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR interacts directly with GcvA rather than binding to DNA to cause repression. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 77

>gnl|CDD|225400 COG2844, GlnD, UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 38.9 bits (91), Expect = 0.004
 Identities = 39/199 (19%), Positives = 73/199 (36%), Gaps = 30/199 (15%)

Query: 57  DRPGLLSEVSAVLTHLKCNVVSAEVWT-HNTRAAALMQVTDEETGGAISDPERLSVIKEL 115
           DRP L + V A L+    ++V A+++T  +  A     V +   G  + +  R ++  EL
Sbjct: 693 DRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEP-DGFPVEEDRRAALRGEL 751

Query: 116 LCNVLKGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVV 175
           +  +L G      A+           R+L                         P V ++
Sbjct: 752 IEALLSGK-----AQPPRR---RRIPRKLRHFPIP-------------------PRVTIL 784

Query: 176 NCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSP 235
                D +V+ + + DRP L+        D+   +  A I   G      + +   DG  
Sbjct: 785 PTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTDADGQA 844

Query: 236 VKSDAERERVIQCLKAAIE 254
           + +   R+ ++Q L  A+ 
Sbjct: 845 L-NAELRQSLLQRLLEALL 862

Length = 867

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	372
PRK01759	854	glnD PII uridylyl-transferase; Provisional	99.97
PRK05007	884	PII uridylyl-transferase; Provisional	99.97
PRK01759	854	glnD PII uridylyl-transferase; Provisional	99.96
PRK05007	884	PII uridylyl-transferase; Provisional	99.96
PRK00275	895	glnD PII uridylyl-transferase; Provisional	99.96
TIGR01693	850	UTase_glnD [Protein-PII] uridylyltransferase. This	99.95
PRK04374	869	PII uridylyl-transferase; Provisional	99.95
PRK05092	931	PII uridylyl-transferase; Provisional	99.95
PRK03059	856	PII uridylyl-transferase; Provisional	99.95
TIGR01693	850	UTase_glnD [Protein-PII] uridylyltransferase. This	99.94
PRK03381	774	PII uridylyl-transferase; Provisional	99.94
PRK00275	895	glnD PII uridylyl-transferase; Provisional	99.93
COG2844	867	GlnD UTP:GlnB (protein PII) uridylyltransferase [P	99.93
PRK04374	869	PII uridylyl-transferase; Provisional	99.92
COG2844	867	GlnD UTP:GlnB (protein PII) uridylyltransferase [P	99.92
PRK05092	931	PII uridylyl-transferase; Provisional	99.92
PRK03381	774	PII uridylyl-transferase; Provisional	99.91
PRK03059	856	PII uridylyl-transferase; Provisional	99.91
cd04897	75	ACT_ACR_3 ACT domain-containing protein which is c	99.82
cd04895	72	ACT_ACR_1 ACT domain-containing protein which is c	99.82
cd04897	75	ACT_ACR_3 ACT domain-containing protein which is c	99.81
cd04896	75	ACT_ACR-like_3 ACT domain-containing protein which	99.78
cd04895	72	ACT_ACR_1 ACT domain-containing protein which is c	99.74
cd04925	74	ACT_ACR_2 ACT domain-containing protein which is c	99.69
PRK11589	190	gcvR glycine cleavage system transcriptional repre	99.69
cd04896	75	ACT_ACR-like_3 ACT domain-containing protein which	99.68
cd04900	73	ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1,	99.67
cd04927	76	ACT_ACR-like_2 Second ACT domain, of a novel type	99.63
cd04925	74	ACT_ACR_2 ACT domain-containing protein which is c	99.62
cd04900	73	ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1,	99.6
cd04927	76	ACT_ACR-like_2 Second ACT domain, of a novel type	99.56
PRK11589	190	gcvR glycine cleavage system transcriptional repre	99.52
COG2716	176	GcvR Glycine cleavage system regulatory protein [A	99.48
cd04928	68	ACT_TyrKc Uncharacterized, N-terminal ACT domain o	99.45
cd04926	72	ACT_ACR_4 C-terminal ACT domain, of a novel type o	99.43
PRK00227	693	glnD PII uridylyl-transferase; Provisional	99.38
cd04926	72	ACT_ACR_4 C-terminal ACT domain, of a novel type o	99.34
PRK00227	693	glnD PII uridylyl-transferase; Provisional	99.34
cd04899	70	ACT_ACR-UUR-like_2 C-terminal ACT domains of the b	99.31
cd04928	68	ACT_TyrKc Uncharacterized, N-terminal ACT domain o	99.31
cd04899	70	ACT_ACR-UUR-like_2 C-terminal ACT domains of the b	99.28
COG2716	176	GcvR Glycine cleavage system regulatory protein [A	99.19
cd04873	70	ACT_UUR-ACR-like ACT domains of the bacterial sign	99.01
cd04873	70	ACT_UUR-ACR-like ACT domains of the bacterial sign	98.96
PF13740	76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	98.67
PF13740	76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	98.67
cd04894	69	ACT_ACR-like_1 ACT domain-containing protein which	98.43
PF01842	66	ACT: ACT domain; InterPro: IPR002912 The ACT domai	98.43
cd04870	75	ACT_PSP_1 CT domains found N-terminal of phosphose	98.4
cd04894	69	ACT_ACR-like_1 ACT domain-containing protein which	98.39
cd04870	75	ACT_PSP_1 CT domains found N-terminal of phosphose	98.37
cd04893	77	ACT_GcvR_1 ACT domains that comprise the Glycine C	98.36
PF01842	66	ACT: ACT domain; InterPro: IPR002912 The ACT domai	98.35
cd04893	77	ACT_GcvR_1 ACT domains that comprise the Glycine C	98.34
COG4747	142	ACT domain-containing protein [General function pr	98.27
cd04875	74	ACT_F4HF-DF N-terminal ACT domain of formyltetrahy	98.15
cd04869	81	ACT_GcvR_2 ACT domains that comprise the Glycine C	98.04
cd04872	88	ACT_1ZPV ACT domain proteins similar to the yet un	98.03
cd04872	88	ACT_1ZPV ACT domain proteins similar to the yet un	98.02
cd04875	74	ACT_F4HF-DF N-terminal ACT domain of formyltetrahy	97.96
cd04869	81	ACT_GcvR_2 ACT domains that comprise the Glycine C	97.95
PRK00194	90	hypothetical protein; Validated	97.95
PRK00194	90	hypothetical protein; Validated	97.91
COG4747	142	ACT domain-containing protein [General function pr	97.71
PF13291	80	ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.	97.7
PF13291	80	ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.	97.63
COG3830	90	ACT domain-containing protein [Signal transduction	97.59
PRK13010	289	purU formyltetrahydrofolate deformylase; Reviewed	97.53
PRK06027	286	purU formyltetrahydrofolate deformylase; Reviewed	97.52
TIGR00655	280	PurU formyltetrahydrofolate deformylase. This mode	97.5
COG3830	90	ACT domain-containing protein [Signal transduction	97.49
PRK13011	286	formyltetrahydrofolate deformylase; Reviewed	97.48
cd04887	74	ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te	97.46
PRK13011	286	formyltetrahydrofolate deformylase; Reviewed	97.37
cd04887	74	ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te	97.35
PRK06027	286	purU formyltetrahydrofolate deformylase; Reviewed	97.32
PRK13010	289	purU formyltetrahydrofolate deformylase; Reviewed	97.24
TIGR00655	280	PurU formyltetrahydrofolate deformylase. This mode	97.22
cd04905	80	ACT_CM-PDT C-terminal ACT domain of the bifunction	97.21
cd04886	73	ACT_ThrD-II-like C-terminal ACT domain of biodegra	97.13
CHL00100	174	ilvH acetohydroxyacid synthase small subunit	97.11
cd04877	74	ACT_TyrR N-terminal ACT domain of the TyrR protein	97.07
cd04889	56	ACT_PDH-BS-like C-terminal ACT domain of the monof	97.06
cd04909	69	ACT_PDH-BS C-terminal ACT domain of the monofuncti	97.06
cd04889	56	ACT_PDH-BS-like C-terminal ACT domain of the monof	97.01
cd04878	72	ACT_AHAS N-terminal ACT domain of the Escherichia	97.01
cd04908	66	ACT_Bt0572_1 N-terminal ACT domain of a novel prot	96.96
cd04886	73	ACT_ThrD-II-like C-terminal ACT domain of biodegra	96.94
cd04879	71	ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te	96.89
cd04877	74	ACT_TyrR N-terminal ACT domain of the TyrR protein	96.89
cd04908	66	ACT_Bt0572_1 N-terminal ACT domain of a novel prot	96.89
cd04881	79	ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin	96.87
cd04898	77	ACT_ACR-like_4 ACT domain-containing protein which	96.77
COG0788	287	PurU Formyltetrahydrofolate hydrolase [Nucleotide	96.74
PRK07431	587	aspartate kinase; Provisional	96.73
cd04888	76	ACT_PheB-BS C-terminal ACT domain of a small (~147	96.69
COG0788	287	PurU Formyltetrahydrofolate hydrolase [Nucleotide	96.68
cd04882	65	ACT_Bt0572_2 C-terminal ACT domain of a novel prot	96.67
cd04888	76	ACT_PheB-BS C-terminal ACT domain of a small (~147	96.64
cd04909	69	ACT_PDH-BS C-terminal ACT domain of the monofuncti	96.64
PRK06737	76	acetolactate synthase 1 regulatory subunit; Valida	96.61
TIGR00119	157	acolac_sm acetolactate synthase, small subunit. ac	96.61
PRK06737	76	acetolactate synthase 1 regulatory subunit; Valida	96.6
cd04902	73	ACT_3PGDH-xct C-terminal ACT (regulatory) domain o	96.6
cd04903	71	ACT_LSD C-terminal ACT domain of the L-serine dehy	96.59
PRK08178	96	acetolactate synthase 1 regulatory subunit; Review	96.57
PRK13562	84	acetolactate synthase 1 regulatory subunit; Provis	96.57
cd04881	79	ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin	96.53
TIGR00119	157	acolac_sm acetolactate synthase, small subunit. ac	96.51
cd04878	72	ACT_AHAS N-terminal ACT domain of the Escherichia	96.41
PRK11895	161	ilvH acetolactate synthase 3 regulatory subunit; R	96.4
cd04879	71	ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te	96.39
cd04880	75	ACT_AAAH-PDT-like ACT domain of the nonheme iron-d	96.39
PRK13562	84	acetolactate synthase 1 regulatory subunit; Provis	96.39
CHL00100	174	ilvH acetohydroxyacid synthase small subunit	96.38
PRK08178	96	acetolactate synthase 1 regulatory subunit; Review	96.34
cd04874	72	ACT_Af1403 N-terminal ACT domain of the yet unchar	96.31
PRK08577	136	hypothetical protein; Provisional	96.29
cd04901	69	ACT_3PGDH C-terminal ACT (regulatory) domain of D-	96.27
cd04904	74	ACT_AAAH ACT domain of the nonheme iron-dependent,	96.26
cd04903	71	ACT_LSD C-terminal ACT domain of the L-serine dehy	96.23
PRK11895	161	ilvH acetolactate synthase 3 regulatory subunit; R	96.22
cd02116	60	ACT ACT domains are commonly involved in specifica	96.21
PRK11152	76	ilvM acetolactate synthase 2 regulatory subunit; P	96.2
cd04901	69	ACT_3PGDH C-terminal ACT (regulatory) domain of D-	96.19
cd04884	72	ACT_CBS C-terminal ACT domain of the cystathionine	96.14
cd04874	72	ACT_Af1403 N-terminal ACT domain of the yet unchar	96.07
cd04883	72	ACT_AcuB C-terminal ACT domain of the Bacillus sub	96.04
cd04876	71	ACT_RelA-SpoT ACT domain found C-terminal of the R	96.03
PRK04435	147	hypothetical protein; Provisional	96.03
cd04931	90	ACT_PAH ACT domain of the nonheme iron-dependent a	95.97
cd04905	80	ACT_CM-PDT C-terminal ACT domain of the bifunction	95.91
cd04882	65	ACT_Bt0572_2 C-terminal ACT domain of a novel prot	95.91
cd04902	73	ACT_3PGDH-xct C-terminal ACT (regulatory) domain o	95.91
PRK11152	76	ilvM acetolactate synthase 2 regulatory subunit; P	95.88
PRK08577	136	hypothetical protein; Provisional	95.88
cd04876	71	ACT_RelA-SpoT ACT domain found C-terminal of the R	95.8
cd04884	72	ACT_CBS C-terminal ACT domain of the cystathionine	95.78
PRK07431	587	aspartate kinase; Provisional	95.7
PRK04435	147	hypothetical protein; Provisional	95.48
TIGR00656	401	asp_kin_monofn aspartate kinase, monofunctional cl	95.36
PRK07334	403	threonine dehydratase; Provisional	95.19
cd02116	60	ACT ACT domains are commonly involved in specifica	95.15
TIGR00719	208	sda_beta L-serine dehydratase, iron-sulfur-depende	95.02
cd04883	72	ACT_AcuB C-terminal ACT domain of the Bacillus sub	94.87
PF13710	63	ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.	94.82
PRK07334	403	threonine dehydratase; Provisional	94.82
PRK06635	404	aspartate kinase; Reviewed	94.8
cd04929	74	ACT_TPH ACT domain of the nonheme iron-dependent a	94.8
PF13710	63	ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.	94.68
PRK10872	743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	94.47
cd04931	90	ACT_PAH ACT domain of the nonheme iron-dependent a	94.34
PRK11899	279	prephenate dehydratase; Provisional	94.16
cd04880	75	ACT_AAAH-PDT-like ACT domain of the nonheme iron-d	94.09
cd04871	84	ACT_PSP_2 ACT domains found N-terminal of phosphos	94.08
PRK06635	404	aspartate kinase; Reviewed	94.03
cd04885	68	ACT_ThrD-I Tandem C-terminal ACT domains of threon	93.89
PRK06291	465	aspartate kinase; Provisional	93.84
PRK10872	743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	93.78
cd04930	115	ACT_TH ACT domain of the nonheme iron-dependent ar	93.66
PRK11092	702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	93.38
cd04885	68	ACT_ThrD-I Tandem C-terminal ACT domains of threon	93.21
cd04898	77	ACT_ACR-like_4 ACT domain-containing protein which	93.2
TIGR00691	683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	93.13
PRK08210	403	aspartate kinase I; Reviewed	93.11
PRK11092	702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	92.92
COG0077	279	PheA Prephenate dehydratase [Amino acid transport	92.79
PRK10622	386	pheA bifunctional chorismate mutase/prephenate deh	92.76
PRK09034	454	aspartate kinase; Reviewed	92.75
TIGR00656	401	asp_kin_monofn aspartate kinase, monofunctional cl	92.72
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	92.44
TIGR00719	208	sda_beta L-serine dehydratase, iron-sulfur-depende	92.3
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	92.21
PF13840	65	ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2	92.03
TIGR00691	683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	91.99
cd04871	84	ACT_PSP_2 ACT domains found N-terminal of phosphos	91.81
COG1707	218	ACT domain-containing protein [General function pr	91.78
PRK06545	359	prephenate dehydrogenase; Validated	91.74
TIGR00657	441	asp_kinases aspartate kinase. The Lys-sensitive en	91.72
COG0317	701	SpoT Guanosine polyphosphate pyrophosphohydrolases	91.5
PRK08818	370	prephenate dehydrogenase; Provisional	91.49
PLN02551	521	aspartokinase	91.36
cd04904	74	ACT_AAAH ACT domain of the nonheme iron-dependent,	91.36
PF13840	65	ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2	91.01
COG0317	701	SpoT Guanosine polyphosphate pyrophosphohydrolases	90.86
PRK09181	475	aspartate kinase; Validated	90.8
COG1707	218	ACT domain-containing protein [General function pr	90.61
PRK06291	465	aspartate kinase; Provisional	90.53
cd04929	74	ACT_TPH ACT domain of the nonheme iron-dependent a	89.88
PRK06349	426	homoserine dehydrogenase; Provisional	89.85
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	89.66
PRK06382	406	threonine dehydratase; Provisional	89.64
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	89.62
PRK08210	403	aspartate kinase I; Reviewed	89.36
PRK09224	504	threonine dehydratase; Reviewed	89.23
PLN02317	382	arogenate dehydratase	88.95
PRK09034	454	aspartate kinase; Reviewed	88.94
PRK14646	155	hypothetical protein; Provisional	88.69
PRK12483	521	threonine dehydratase; Reviewed	88.44
PRK06382	406	threonine dehydratase; Provisional	88.42
cd04906	85	ACT_ThrD-I_1 First of two tandem C-terminal ACT do	88.26
cd04932	75	ACT_AKiii-LysC-EC_1 ACT domains located C-terminal	87.86
PRK14634	155	hypothetical protein; Provisional	87.84
cd04935	75	ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AK	87.66
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	87.55
PRK14636	176	hypothetical protein; Provisional	87.39
cd04906	85	ACT_ThrD-I_1 First of two tandem C-terminal ACT do	87.09
COG0527	447	LysC Aspartokinases [Amino acid transport and meta	87.08
COG2150	167	Predicted regulator of amino acid metabolism, cont	86.93
PRK11899	279	prephenate dehydratase; Provisional	86.75
PRK14630	143	hypothetical protein; Provisional	86.01
PRK06545	359	prephenate dehydrogenase; Validated	85.77
PRK14645	154	hypothetical protein; Provisional	85.74
cd04930	115	ACT_TH ACT domain of the nonheme iron-dependent ar	85.49
PRK08198	404	threonine dehydratase; Provisional	85.24
KOG2663	309	consensus Acetolactate synthase, small subunit [Am	85.09
TIGR01127	380	ilvA_1Cterm threonine dehydratase, medium form. A	84.78
PLN02551	521	aspartokinase	84.72
COG0077	279	PheA Prephenate dehydratase [Amino acid transport	84.66
PRK11898	283	prephenate dehydratase; Provisional	83.71
PRK08198	404	threonine dehydratase; Provisional	83.51
PRK09084	448	aspartate kinase III; Validated	82.81
KOG2663	309	consensus Acetolactate synthase, small subunit [Am	82.42
TIGR01127	380	ilvA_1Cterm threonine dehydratase, medium form. A	82.14
cd04890	62	ACT_AK-like_1 ACT domains found C-terminal to the	81.9
COG0440	163	IlvH Acetolactate synthase, small (regulatory) sub	81.83
TIGR01270	464	Trp_5_monoox tryptophan 5-monooxygenase, tetrameri	81.66
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	81.42
PRK08818	370	prephenate dehydrogenase; Provisional	81.22
PRK14640	152	hypothetical protein; Provisional	81.12

>PRK01759 glnD PII uridylyl-transferase; Provisional

Probab=99.97  E-value=1.3e-29  Score=273.16  Aligned_cols=188  Identities=14%  Similarity=0.202  Sum_probs=163.8

Q ss_pred             CCc-eecccCCCCeEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEe-cCCceEEEEEEecCCCCCCCCCHHHHHHHH
Q 017375           36 SMR-SVGVKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT-HNTRAAALMQVTDEETGGAISDPERLSVIK  113 (372)
Q Consensus        36 ~~~-~~~~~~~~~~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T-~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~  113 (372)
                      ++. .++++.+.++|+|+|+++||||||++|+++|+.+|+||++|+|+| .+|+++|+|+|++ .+|.++ +++++++|+
T Consensus       664 ~~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d-~~g~~~-~~~~~~~l~  741 (854)
T PRK01759        664 DLLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTE-LNGKLL-EFDRRRQLE  741 (854)
T ss_pred             CCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeC-CCCCCC-CHHHHHHHH
Confidence            344 788888999999999999999999999999999999999999999 7999999999999 588888 467899999


Q ss_pred             HHHHHhhcCCCCCCcccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCCEEEEEecCCCCeEEEEEEecCCc
Q 017375          114 ELLCNVLKGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKDRP  193 (372)
Q Consensus       114 ~~L~~~L~~~~~~~~~~~~l~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~v~V~~~Drp  193 (372)
                      +.|.++|.+.....   ..         +|..      +..         +++..+|+|.|+|+.+..+|+|+|.++|||
T Consensus       742 ~~L~~aL~~~~~~~---~~---------~~~~------~~~---------~~~~~~~~V~~dn~~s~~~T~iev~a~Drp  794 (854)
T PRK01759        742 QALTKALNTNKLKK---LN---------LEEN------HKL---------QHFHVKTEVRFLNEEKQEQTEMELFALDRA  794 (854)
T ss_pred             HHHHHHHcCCCCcc---hh---------cccc------ccc---------cCCCCCCEEEEccCCCCCeEEEEEEeCCch
Confidence            99999998765321   00         0100      000         356688999999999999999999999999


Q ss_pred             cHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHH
Q 017375          194 KLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAI  253 (372)
Q Consensus       194 GLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L  253 (372)
                      ||||+|+++|.++|++|+.|+|+|.|+++.|+|||++.+|.+++++.+ ++|+++|.++|
T Consensus       795 GLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~~g~~l~~~~~-~~l~~~L~~~l  853 (854)
T PRK01759        795 GLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQQGQALDEEER-KALKSRLLSNL  853 (854)
T ss_pred             HHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEECCCCCcCChHHH-HHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999988644 99999998876

>PRK05007 PII uridylyl-transferase; Provisional

Probab=99.97  E-value=5.4e-29  Score=269.17  Aligned_cols=187  Identities=20%  Similarity=0.243  Sum_probs=163.4

Q ss_pred             eecccCCCCeEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEec-CCceEEEEEEecCCCCCCCCCHHHHHHHHHHHH
Q 017375           39 SVGVKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH-NTRAAALMQVTDEETGGAISDPERLSVIKELLC  117 (372)
Q Consensus        39 ~~~~~~~~~~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~-~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~  117 (372)
                      .++++.+.++++|+|+++||||||++||++|+.+|+||++|+|+|. +|+++|+|+|++ .+|.++ +++++++|++.|.
T Consensus       692 ~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d-~~g~~~-~~~~~~~I~~~L~  769 (884)
T PRK05007        692 LLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLE-PDGSPL-SQDRHQVIRKALE  769 (884)
T ss_pred             EEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEEC-CCCCCC-CHHHHHHHHHHHH
Confidence            7778888999999999999999999999999999999999999995 679999999999 588888 4678999999999


Q ss_pred             HhhcCCCCCCcccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCCEEEEEecCCCCeEEEEEEecCCccHHH
Q 017375          118 NVLKGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVF  197 (372)
Q Consensus       118 ~~L~~~~~~~~~~~~l~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~v~V~~~DrpGLL~  197 (372)
                      ++|.+.....   . .       .+|..      +..         +++..+|+|.|+|+.+..+|+|+|.++|||||||
T Consensus       770 ~aL~~~~~~~---~-~-------~~~~~------~~~---------~~~~~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~  823 (884)
T PRK05007        770 QALTQSSPQP---P-K-------PRRLP------AKL---------RHFNVPTEVSFLPTHTDRRSYMELIALDQPGLLA  823 (884)
T ss_pred             HHHcCCCCCc---c-c-------ccccc------ccc---------CCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHH
Confidence            9998764321   1 1       11110      000         4566889999999999999999999999999999


Q ss_pred             HHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHh
Q 017375          198 DTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIE  254 (372)
Q Consensus       198 ~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~  254 (372)
                      +|+++|.++|++|+.|+|+|.|+++.|+|||++.+|.++++ ++.+.|+++|.++|+
T Consensus       824 ~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~~~g~~l~~-~~~~~l~~~L~~~l~  879 (884)
T PRK05007        824 RVGKIFADLGISLHGARITTIGERVEDLFILATADRRALNE-ELQQELRQRLTEALN  879 (884)
T ss_pred             HHHHHHHHCCcEEEEEEEeccCceEEEEEEEEcCCCCcCCH-HHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999984 588999999998885

>PRK01759 glnD PII uridylyl-transferase; Provisional

Probab=99.96  E-value=2.3e-28  Score=263.44  Aligned_cols=164  Identities=21%  Similarity=0.351  Sum_probs=149.3

Q ss_pred             CCCCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-eCCeEEEEEEEeeCCCCCCCCHHHHHH
Q 017375          166 EKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDA-EGPEAYQEYFIRHIDGSPVKSDAERER  244 (372)
Q Consensus       166 ~~~~~~V~i~~~~~~~~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T-~g~~~~d~F~V~~~~g~~~~~~~~~e~  244 (372)
                      ...+|.|.++++.+.++|+|+|+++||||||++|+++|+.+|+||++|+|.| .+|+++|+|+|.+++|.++.+ +++++
T Consensus       661 ~~~~~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~~-~~~~~  739 (854)
T PRK01759        661 FRGDLLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLEF-DRRRQ  739 (854)
T ss_pred             cCCCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCCH-HHHHH
Confidence            3457888899999999999999999999999999999999999999999998 789999999999999998864 68999


Q ss_pred             HHHHHHHHHhcc-----------------C-----------CCceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeec
Q 017375          245 VIQCLKAAIERR-----------------V-----------SEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATK  296 (372)
Q Consensus       245 l~~~L~~~L~~r-----------------~-----------~~~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~  296 (372)
                      |++.|..+|.++                 .           +..|+|||.+.|||||||+|+++|.++|++|+.|||+|.
T Consensus       740 l~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~  819 (854)
T PRK01759        740 LEQALTKALNTNKLKKLNLEENHKLQHFHVKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTI  819 (854)
T ss_pred             HHHHHHHHHcCCCCcchhccccccccCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEccc
Confidence            999999998531                 0           125999999999999999999999999999999999999


Q ss_pred             CCeeeeEEEEEcCCCCCCCHHHHHHHHHHHHHhh
Q 017375          297 SGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQTI  330 (372)
Q Consensus       297 g~~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~~~  330 (372)
                      |++++|+|||+|..|.|++++..++|+++|.+++
T Consensus       820 gerv~D~Fyv~~~~g~~l~~~~~~~l~~~L~~~l  853 (854)
T PRK01759        820 GEKAEDFFILTNQQGQALDEEERKALKSRLLSNL  853 (854)
T ss_pred             CceEEEEEEEECCCCCcCChHHHHHHHHHHHHHh
Confidence            9999999999999999998765599999998865

>PRK05007 PII uridylyl-transferase; Provisional

Probab=99.96  E-value=3.6e-28  Score=262.76  Aligned_cols=163  Identities=21%  Similarity=0.320  Sum_probs=150.2

Q ss_pred             CCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEeeCCCCCCCCHHHHHHHH
Q 017375          168 QRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGSPVKSDAERERVI  246 (372)
Q Consensus       168 ~~~~V~i~~~~~~~~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g-~~~~d~F~V~~~~g~~~~~~~~~e~l~  246 (372)
                      .+|.|.++++.+.++|+|+|+++||||||++|+++|+.+|+||++|+|+|.+ |+++|+|+|++.+|.+++. +++++++
T Consensus       687 ~~p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~~~-~~~~~I~  765 (884)
T PRK05007        687 DKPLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPLSQ-DRHQVIR  765 (884)
T ss_pred             CCCeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCCCH-HHHHHHH
Confidence            5688889999999999999999999999999999999999999999999976 6999999999999998854 6899999


Q ss_pred             HHHHHHHhcc-----------------------------CCCceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecC
Q 017375          247 QCLKAAIERR-----------------------------VSEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKS  297 (372)
Q Consensus       247 ~~L~~~L~~r-----------------------------~~~~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g  297 (372)
                      +.|.++|.++                             .+..|+|||.+.|||||||+|+++|+++|++|++|+|+|.|
T Consensus       766 ~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~g  845 (884)
T PRK05007        766 KALEQALTQSSPQPPKPRRLPAKLRHFNVPTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIG  845 (884)
T ss_pred             HHHHHHHcCCCCCcccccccccccCCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccC
Confidence            9999998532                             01259999999999999999999999999999999999999


Q ss_pred             CeeeeEEEEEcCCCCCCCHHHHHHHHHHHHHhhh
Q 017375          298 GKAVNTFYVGGASGYPVDAKIIDSIRQSIGQTIL  331 (372)
Q Consensus       298 ~~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~~~~  331 (372)
                      ++++|+|||++..|.+++++.+++|+++|.+++.
T Consensus       846 era~DvFyV~~~~g~~l~~~~~~~l~~~L~~~l~  879 (884)
T PRK05007        846 ERVEDLFILATADRRALNEELQQELRQRLTEALN  879 (884)
T ss_pred             ceEEEEEEEEcCCCCcCCHHHHHHHHHHHHHHHh
Confidence            9999999999999999998788999999999884

>PRK00275 glnD PII uridylyl-transferase; Provisional

Probab=99.96  E-value=7.5e-28  Score=260.34  Aligned_cols=184  Identities=20%  Similarity=0.300  Sum_probs=159.6

Q ss_pred             CCeEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEe-cCCceEEEEEEecCCCCCCCC-CHHHHHHHHHHHHHhhcCC
Q 017375           46 MDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT-HNTRAAALMQVTDEETGGAIS-DPERLSVIKELLCNVLKGS  123 (372)
Q Consensus        46 ~~~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T-~~~~~~d~F~V~~~~~g~~i~-~~~~~~~l~~~L~~~L~~~  123 (372)
                      .+.++|+|+++||||||++||++|+.+|+||++|+|+| .+|+++|+|+|++ .+|.++. +++++++|++.|.++|.++
T Consensus       702 ~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d-~~g~~~~~~~~r~~~i~~~L~~~L~~~  780 (895)
T PRK00275        702 EGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLD-DDGEPIGDNPARIEQIREGLTEALRNP  780 (895)
T ss_pred             CCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeC-CCCCCccchHHHHHHHHHHHHHHHcCC
Confidence            58999999999999999999999999999999999988 5899999999999 5787753 4589999999999999886


Q ss_pred             CCCCcccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHH
Q 017375          124 NKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTL  203 (372)
Q Consensus       124 ~~~~~~~~~l~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~v~V~~~DrpGLL~~i~~~L  203 (372)
                      ...+   ..+       .+|...      ..         +++..+|.|.++++.+.++|+|+|+++||||||++|+++|
T Consensus       781 ~~~~---~~~-------~~~~~~------~~---------~~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L  835 (895)
T PRK00275        781 DDYP---TII-------QRRVPR------QL---------KHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIF  835 (895)
T ss_pred             Cccc---hhh-------hhhhhh------hc---------cCCCCCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHH
Confidence            5431   111       122111      00         3456789999999999999999999999999999999999


Q ss_pred             HhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhc
Q 017375          204 TDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER  255 (372)
Q Consensus       204 ~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~  255 (372)
                      +.+|+||++|+|.|.|++++|+|||++.+|.++.++.++++|++.|.++|..
T Consensus       836 ~~~~l~I~~AkI~T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L~~  887 (895)
T PRK00275        836 LEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQDAICEQLDA  887 (895)
T ss_pred             HHCCCEEEEeEEEecCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999998877899999999999853

>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase

Probab=99.95  E-value=1e-26  Score=251.82  Aligned_cols=189  Identities=23%  Similarity=0.334  Sum_probs=162.6

Q ss_pred             eecccCCCCeEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEe-cCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHH
Q 017375           39 SVGVKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT-HNTRAAALMQVTDEETGGAISDPERLSVIKELLC  117 (372)
Q Consensus        39 ~~~~~~~~~~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T-~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~  117 (372)
                      .+++....+.|+|+|+++||||||++|+++|+.+|+||++|+|+| .+|+++|+|+|++ .+|.++.+++++++|++.|.
T Consensus       659 ~~~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~-~~g~~~~~~~~~~~i~~~L~  737 (850)
T TIGR01693       659 LIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQD-LFGSPPAAERVFQELLQGLV  737 (850)
T ss_pred             EEeccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEEC-CCCCCCCcHHHHHHHHHHHH
Confidence            566656689999999999999999999999999999999999995 6999999999999 58888878778999999999


Q ss_pred             HhhcCCCCCCcccccccccccchhhh-hhhhhhccccccccCCCCCCCCCCCCCEEEEEecCCCCeEEEEEEecCCccHH
Q 017375          118 NVLKGSNKSGLAKTEVSQDVTHTERR-LHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLV  196 (372)
Q Consensus       118 ~~L~~~~~~~~~~~~l~~~~~~~~rR-l~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~v~V~~~DrpGLL  196 (372)
                      ++|.+....+   ..+.      .++ ..      +..         +++..+|.|.|+|+.+..+|+|+|.++||||||
T Consensus       738 ~~L~~~~~~~---~~~~------~~~~~~------~~~---------~~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGll  793 (850)
T TIGR01693       738 DVLAGLAKDP---DTIS------ARRARR------RRL---------QHFAVPPRVTILNTASRKATIMEVRALDRPGLL  793 (850)
T ss_pred             HHHcCCCccc---cccc------cccCCc------ccc---------cCCCCCCeEEEccCCCCCeEEEEEEECCccHHH
Confidence            9998754321   1110      000 00      000         356688999999999999999999999999999


Q ss_pred             HHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHH
Q 017375          197 FDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAI  253 (372)
Q Consensus       197 ~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L  253 (372)
                      ++|+++|+++|+||++|+|.|.|+++.|+|||++..|.++++ ++++.|+++|.++|
T Consensus       794 ~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~g~~~~~-~~~~~l~~~L~~~l  849 (850)
T TIGR01693       794 ARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFGLKLTD-EEEQRLLEVLAASV  849 (850)
T ss_pred             HHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCCCCCCCH-HHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999988 58899999998876

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.

>PRK04374 PII uridylyl-transferase; Provisional

Probab=99.95  E-value=8.9e-27  Score=250.64  Aligned_cols=182  Identities=19%  Similarity=0.235  Sum_probs=155.3

Q ss_pred             cCCCCeEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEe-cCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHhhc
Q 017375           43 KQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT-HNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLK  121 (372)
Q Consensus        43 ~~~~~~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T-~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~L~  121 (372)
                      .+..+.++|+|+++|+||||++||++|+.+|+||++|+|+| .+|.++|+|+|.++ .|.+   ++++++|++.|.++|.
T Consensus       685 ~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~-~~~~---~~~~~~i~~~l~~~l~  760 (869)
T PRK04374        685 VPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQ-DTYA---DGDPQRLAAALRQVLA  760 (869)
T ss_pred             ccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCC-CCCC---hHHHHHHHHHHHHHHc
Confidence            56678999999999999999999999999999999999999 69999999999984 5653   3578899999999998


Q ss_pred             CCCCCCcccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCCEEEEEecCCCCeEEEEEEecCCccHHHHHHH
Q 017375          122 GSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVC  201 (372)
Q Consensus       122 ~~~~~~~~~~~l~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~v~V~~~DrpGLL~~i~~  201 (372)
                      ++....    .+.      .+|..      +..         +++..+|+|.++++.+.++|+|+|+++||||||++|++
T Consensus       761 ~~~~~~----~~~------~~~~~------~~~---------~~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~  815 (869)
T PRK04374        761 GDLQKV----RPA------RRAVP------RQL---------RHFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADVAH  815 (869)
T ss_pred             CCCCcc----ccc------cccCc------ccc---------cCCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHH
Confidence            865321    121      01110      010         45678899999999999999999999999999999999


Q ss_pred             HHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHh
Q 017375          202 TLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIE  254 (372)
Q Consensus       202 ~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~  254 (372)
                      +|+.+|+||++|+|+|.|++++|+|||++++|.++.++++ +.|+++|.++|+
T Consensus       816 ~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~~g~~~~~~~~-~~l~~~L~~~l~  867 (869)
T PRK04374        816 VLRMQHLRVHDARIATFGERAEDQFQITDEHDRPLSESAR-QALRDALCACLD  867 (869)
T ss_pred             HHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcCChHHH-HHHHHHHHHHhc
Confidence            9999999999999999999999999999999998877544 999999998874

>PRK05092 PII uridylyl-transferase; Provisional

Probab=99.95  E-value=5.7e-26  Score=247.65  Aligned_cols=193  Identities=21%  Similarity=0.390  Sum_probs=165.7

Q ss_pred             eecccCCCCeEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEe-cCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHH
Q 017375           39 SVGVKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT-HNTRAAALMQVTDEETGGAISDPERLSVIKELLC  117 (372)
Q Consensus        39 ~~~~~~~~~~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T-~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~  117 (372)
                      .+++....+.++|+|+++||||||++|+++|+.+||||++|+|+| .+|+++|+|+|++ .+|.+..+++++++|++.|.
T Consensus       723 ~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~-~~g~~~~~~~~~~~l~~~L~  801 (931)
T PRK05092        723 EVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQD-AFGRDEDEPRRLARLAKAIE  801 (931)
T ss_pred             EEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEEC-CCCCCCCCHHHHHHHHHHHH
Confidence            466777789999999999999999999999999999999999999 6899999999998 57877767889999999999


Q ss_pred             HhhcCCCCCCcccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCCEEEEEecCCCCeEEEEEEecCCccHHH
Q 017375          118 NVLKGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVF  197 (372)
Q Consensus       118 ~~L~~~~~~~~~~~~l~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~v~V~~~DrpGLL~  197 (372)
                      +++.+...+.   ..+       .+|...    .+..         +++..+|.|.|+|+.+.++|+|+|+++||||||+
T Consensus       802 ~~l~~~~~~~---~~~-------~~r~~~----~~~~---------~~~~~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~  858 (931)
T PRK05092        802 DALSGEVRLP---EAL-------AKRTKP----KKRA---------RAFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLY  858 (931)
T ss_pred             HHHcCCCCCc---ccc-------ccccCc----cccc---------cCCCCCCEEEEeeCCCCCeEEEEEEECCcCcHHH
Confidence            9998764431   111       111000    0000         3566789999999999999999999999999999


Q ss_pred             HHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhc
Q 017375          198 DTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER  255 (372)
Q Consensus       198 ~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~  255 (372)
                      +|+++|+++|+||.+|+|.|.++++.|+|+|++.+|.++.++++++.|++.|.++|.+
T Consensus       859 ~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~~  916 (931)
T PRK05092        859 DLTRALSDLNLNIASAHIATYGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALAE  916 (931)
T ss_pred             HHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999998877899999999999964

>PRK03059 PII uridylyl-transferase; Provisional

Probab=99.95  E-value=2.5e-26  Score=247.50  Aligned_cols=186  Identities=17%  Similarity=0.252  Sum_probs=155.6

Q ss_pred             eecccCCCCeEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEe-cCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHH
Q 017375           39 SVGVKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT-HNTRAAALMQVTDEETGGAISDPERLSVIKELLC  117 (372)
Q Consensus        39 ~~~~~~~~~~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T-~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~  117 (372)
                      .+.+....+.++|+|+++||||||++||++|+.+|+||++|+|+| .+|.++|+|+|.++ +|. ..+++++++|++.|.
T Consensus       669 ~~~~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~-~~~-~~~~~~~~~i~~~l~  746 (856)
T PRK03059        669 RARLSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDP-EED-VHYRDIINLVEHELA  746 (856)
T ss_pred             EEEecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCC-CCC-CChHHHHHHHHHHHH
Confidence            455666779999999999999999999999999999999999988 69999999999984 555 456679999999999


Q ss_pred             HhhcCCCCCCcccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCCEEEEEecCCCCeEEEEEEecCCccHHH
Q 017375          118 NVLKGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVF  197 (372)
Q Consensus       118 ~~L~~~~~~~~~~~~l~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~v~V~~~DrpGLL~  197 (372)
                      ++|.++....   ..+       .+|..      +..         +.+..++.|.++++.+.++|+|+|+++||||||+
T Consensus       747 ~~l~~~~~~~---~~~-------~~~~~------~~~---------~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa  801 (856)
T PRK03059        747 ERLAEQAPLP---EPS-------KGRLS------RQV---------KHFPITPRVDLRPDERGQYYILSVSANDRPGLLY  801 (856)
T ss_pred             HHHcCCCCcc---hhh-------ccccc------ccc---------cCCCCCceEEEEEcCCCCEEEEEEEeCCcchHHH
Confidence            9998865331   111       11110      010         4567789999999999999999999999999999


Q ss_pred             HHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHh
Q 017375          198 DTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIE  254 (372)
Q Consensus       198 ~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~  254 (372)
                      +|+++|+.+|+||++|+|+|.|++++|+|||.+   .+..+++++++|++.|.++|+
T Consensus       802 ~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~~---~~~~~~~~~~~l~~~L~~~L~  855 (856)
T PRK03059        802 AIARVLAEHRVSVHTAKINTLGERVEDTFLIDG---SGLSDNRLQIQLETELLDALA  855 (856)
T ss_pred             HHHHHHHHCCCeEEEEEEeecCCEEEEEEEEcC---CCCCCHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999953   334566789999999988774

>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase

Probab=99.94  E-value=1.7e-25  Score=242.28  Aligned_cols=163  Identities=20%  Similarity=0.286  Sum_probs=148.8

Q ss_pred             CCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEE-eeCCeEEEEEEEeeCCCCCCCCHHHHHHHH
Q 017375          168 QRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANID-AEGPEAYQEYFIRHIDGSPVKSDAERERVI  246 (372)
Q Consensus       168 ~~~~V~i~~~~~~~~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~-T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~  246 (372)
                      ..|.|.+++....++|+|+|+++||||||++|+++|+.+|+||++|+|+ |.+++++|+|||++.+|.++.+++++++++
T Consensus       654 ~~~~v~~~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~~~~~~~~~i~  733 (850)
T TIGR01693       654 GGPLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQELL  733 (850)
T ss_pred             CCCEEEEeccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCCCCcHHHHHHHH
Confidence            3578888887778999999999999999999999999999999999999 568999999999999999988877899999


Q ss_pred             HHHHHHHhcc------------C--------------------CCceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEe
Q 017375          247 QCLKAAIERR------------V--------------------SEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVA  294 (372)
Q Consensus       247 ~~L~~~L~~r------------~--------------------~~~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~  294 (372)
                      +.|.++|.++            .                    +..|+|+|.|.|||||||+|+++|+++|++|++|+|.
T Consensus       734 ~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~  813 (850)
T TIGR01693       734 QGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKIT  813 (850)
T ss_pred             HHHHHHHcCCCccccccccccCCcccccCCCCCCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEE
Confidence            9999998531            0                    1259999999999999999999999999999999999


Q ss_pred             ecCCeeeeEEEEEcCCCCCCCHHHHHHHHHHHHHhh
Q 017375          295 TKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQTI  330 (372)
Q Consensus       295 T~g~~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~~~  330 (372)
                      |.|++++|+|||++..|.|++++.++.|+++|.+++
T Consensus       814 t~~~~~~d~F~v~~~~g~~~~~~~~~~l~~~L~~~l  849 (850)
T TIGR01693       814 TFGEKAEDVFYVTDLFGLKLTDEEEQRLLEVLAASV  849 (850)
T ss_pred             ecCccceeEEEEECCCCCCCCHHHHHHHHHHHHHHh
Confidence            999999999999999999998888899999998875

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.

>PRK03381 PII uridylyl-transferase; Provisional

Probab=99.94  E-value=1.7e-25  Score=239.13  Aligned_cols=183  Identities=21%  Similarity=0.264  Sum_probs=149.8

Q ss_pred             eecccCCCCeEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEecCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017375           39 SVGVKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCN  118 (372)
Q Consensus        39 ~~~~~~~~~~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~  118 (372)
                      .+++.. .+.++|+|+++||||||++||++|+.+||||++|+|+|.+|.++|+|+|++ ..|.+.    .++++++.|.+
T Consensus       591 ~~~~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~-~~~~~~----~~~~l~~~L~~  664 (774)
T PRK03381        591 EIAPAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSP-RFGSPP----DAALLRQDLRR  664 (774)
T ss_pred             EEeeCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEEC-CCCCcc----hHHHHHHHHHH
Confidence            455566 799999999999999999999999999999999999999999999999998 466543    35889999999


Q ss_pred             hhcCCCCCCcccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCCEEEEEecCCCCeEEEEEEecCCccHHHH
Q 017375          119 VLKGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFD  198 (372)
Q Consensus       119 ~L~~~~~~~~~~~~l~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~v~V~~~DrpGLL~~  198 (372)
                      +|.+.....   ..+.       +|... + ..+..         +.+..++.|.++++.+.++|+|+|+++||||||++
T Consensus       665 ~L~~~~~~~---~~~~-------~~~~~-~-~~~~~---------~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~  723 (774)
T PRK03381        665 ALDGDLDVL---ARLA-------AREAA-A-AAVPV---------RRPAAPPRVLWLDGASPDATVLEVRAADRPGLLAR  723 (774)
T ss_pred             HHcCCCchh---hhhh-------ccccc-c-ccccc---------ccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHH
Confidence            998854321   1110       11000 0 00000         35667899999999999999999999999999999


Q ss_pred             HHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHH
Q 017375          199 TVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLK  250 (372)
Q Consensus       199 i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~  250 (372)
                      |+++|+++|+||++|+|.|.|++++|+|||++.+|.+++++  .+.|+++|.
T Consensus       724 Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~~g~~~~~~--~~~l~~~L~  773 (774)
T PRK03381        724 LARALERAGVDVRWARVATLGADVVDVFYVTGAAGGPLADA--RAAVEQAVL  773 (774)
T ss_pred             HHHHHHHCCCeEEEEEEeecCCeEEEEEEEECCCCCcCchH--HHHHHHHhh
Confidence            99999999999999999999999999999999999999873  677777664

>PRK00275 glnD PII uridylyl-transferase; Provisional

Probab=99.93  E-value=1.4e-24  Score=234.95  Aligned_cols=166  Identities=21%  Similarity=0.335  Sum_probs=145.7

Q ss_pred             CCEEEEEecCC---CCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEeeCCCCCCC-CHHHHH
Q 017375          169 RPNVNVVNCYD---KDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE-GPEAYQEYFIRHIDGSPVK-SDAERE  243 (372)
Q Consensus       169 ~~~V~i~~~~~---~~~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~-g~~~~d~F~V~~~~g~~~~-~~~~~e  243 (372)
                      .+.|.+.+...   .+++.|.|+++||||||+++|++|+.+|+||++|+|+|. +|+++|+|+|.+++|.++. ++++++
T Consensus       688 ~~~v~~~~~~~~~~~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~g~~~~~~~~r~~  767 (895)
T PRK00275        688 GPLVLIKETTQREFEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPARIE  767 (895)
T ss_pred             CCeEEEEecCccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCCCCCccchHHHHH
Confidence            45566766654   589999999999999999999999999999999999876 5899999999999999854 346899


Q ss_pred             HHHHHHHHHHhccC------------------------------CCceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEE
Q 017375          244 RVIQCLKAAIERRV------------------------------SEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEV  293 (372)
Q Consensus       244 ~l~~~L~~~L~~r~------------------------------~~~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i  293 (372)
                      +|++.|..+|.++.                              +..|.|+|.+.||||||++|+++|+.+|++|+.|+|
T Consensus       768 ~i~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI  847 (895)
T PRK00275        768 QIREGLTEALRNPDDYPTIIQRRVPRQLKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKI  847 (895)
T ss_pred             HHHHHHHHHHcCCCccchhhhhhhhhhccCCCCCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEE
Confidence            99999999885310                              125999999999999999999999999999999999


Q ss_pred             eecCCeeeeEEEEEcCCCCCCCH-HHHHHHHHHHHHhhhccc
Q 017375          294 ATKSGKAVNTFYVGGASGYPVDA-KIIDSIRQSIGQTILKVK  334 (372)
Q Consensus       294 ~T~g~~~~d~F~v~~~~g~~~~~-~~~~~l~~~l~~~~~~~~  334 (372)
                      .|.|+++.|+|||++..|.|+++ +.+++|+++|.+++.+..
T Consensus       848 ~T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L~~~~  889 (895)
T PRK00275        848 ATLGERVEDVFFITDADNQPLSDPQLCSRLQDAICEQLDARN  889 (895)
T ss_pred             EecCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhccc
Confidence            99999999999999999999966 588999999999885444

>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=5.9e-25  Score=226.32  Aligned_cols=185  Identities=21%  Similarity=0.336  Sum_probs=153.9

Q ss_pred             ecccCCCCeEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEe-cCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017375           40 VGVKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT-HNTRAAALMQVTDEETGGAISDPERLSVIKELLCN  118 (372)
Q Consensus        40 ~~~~~~~~~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T-~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~  118 (372)
                      +++....+.++|+|+++|+|.||+.+|+.+...|+||++|+|+| .+|++.|+|+|++ .+|.++. +.+...++..|.+
T Consensus       676 ~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~-~~g~~~~-~dr~~~~~~~l~~  753 (867)
T COG2844         676 ISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLE-PDGFPVE-EDRRAALRGELIE  753 (867)
T ss_pred             eeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEec-CCCCccc-hhHHHHHHHHHHH
Confidence            34455568999999999999999999999999999999999999 5999999999999 4888885 6677778888888


Q ss_pred             hhcCCCCCCcccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCCEEEEEecCCCCeEEEEEEecCCccHHHH
Q 017375          119 VLKGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFD  198 (372)
Q Consensus       119 ~L~~~~~~~~~~~~l~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~v~V~~~DrpGLL~~  198 (372)
                      ++......+    ..       .+|.+      +..         ++|..+|.|.|.++.+..+|+++|.+.||||||++
T Consensus       754 ~l~s~~~~~----~~-------~~r~~------r~~---------~~f~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~  807 (867)
T COG2844         754 ALLSGKAQP----PR-------RRRIP------RKL---------RHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAA  807 (867)
T ss_pred             HHhcCCCCC----cc-------ccccC------ccc---------ceeccCCceeeccccCCCceEEEEEeCCcccHHHH
Confidence            776543221    01       11211      010         46788999999999999999999999999999999


Q ss_pred             HHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHH
Q 017375          199 TVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAI  253 (372)
Q Consensus       199 i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L  253 (372)
                      ++++|++++++|++|+|.|.|+++.|+|||++..|.+++++ ..+.+.+.|.+++
T Consensus       808 v~~v~~dl~l~i~~AkItT~GErveD~F~vt~~~~~~l~~~-~~q~l~~~ll~al  861 (867)
T COG2844         808 LAGVFADLGLSLHSAKITTFGERVEDVFIVTDADGQALNAE-LRQSLLQRLLEAL  861 (867)
T ss_pred             HHHHHHhcccceeeeeeccccccceeEEEEeccccccCCHH-HHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999664 5566666666655

>PRK04374 PII uridylyl-transferase; Provisional

Probab=99.92  E-value=1e-23  Score=226.99  Aligned_cols=160  Identities=21%  Similarity=0.304  Sum_probs=139.9

Q ss_pred             CCEEEEEe-cCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEeeCCCCCCCCHHHHHHHH
Q 017375          169 RPNVNVVN-CYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE-GPEAYQEYFIRHIDGSPVKSDAERERVI  246 (372)
Q Consensus       169 ~~~V~i~~-~~~~~~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~-g~~~~d~F~V~~~~g~~~~~~~~~e~l~  246 (372)
                      .+.|.+.. .+..+.+.|+|+++||||||++||++|+.+|+||++|+|+|. +|+++|+|+|.+++|..  . +++++++
T Consensus       676 ~~~v~~~~~~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~--~-~~~~~i~  752 (869)
T PRK04374        676 QTLVKARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYA--D-GDPQRLA  752 (869)
T ss_pred             CCeEEEeeeccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCC--h-HHHHHHH
Confidence            34455433 667799999999999999999999999999999999999985 69999999999988874  2 4788899


Q ss_pred             HHHHHHHhcc----------C--------------------CCceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeec
Q 017375          247 QCLKAAIERR----------V--------------------SEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATK  296 (372)
Q Consensus       247 ~~L~~~L~~r----------~--------------------~~~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~  296 (372)
                      +.|..+|.++          .                    +..|.|+|.+.|||||||+|+++|+++|++|+.|+|+|.
T Consensus       753 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~  832 (869)
T PRK04374        753 AALRQVLAGDLQKVRPARRAVPRQLRHFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATF  832 (869)
T ss_pred             HHHHHHHcCCCCccccccccCcccccCCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEec
Confidence            9999988531          0                    125999999999999999999999999999999999999


Q ss_pred             CCeeeeEEEEEcCCCCCCCHHHHHHHHHHHHHhhh
Q 017375          297 SGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQTIL  331 (372)
Q Consensus       297 g~~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~~~~  331 (372)
                      |+++.|+|||++..|.+++++..++|+++|.+++-
T Consensus       833 g~~a~D~F~V~d~~g~~~~~~~~~~l~~~L~~~l~  867 (869)
T PRK04374        833 GERAEDQFQITDEHDRPLSESARQALRDALCACLD  867 (869)
T ss_pred             CCEEEEEEEEECCCCCcCChHHHHHHHHHHHHHhc
Confidence            99999999999999999877555999999998873

>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=8.4e-24  Score=217.86  Aligned_cols=165  Identities=23%  Similarity=0.315  Sum_probs=147.8

Q ss_pred             CCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEeeCCCCCCCCHHHHHHHH
Q 017375          168 QRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGSPVKSDAERERVI  246 (372)
Q Consensus       168 ~~~~V~i~~~~~~~~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g-~~~~d~F~V~~~~g~~~~~~~~~e~l~  246 (372)
                      ..|.|.+......+.|.|.|+++|+|.||+.++.++...|+||++|+|+|.. |++.|+|+|.+++|.++.. ++...++
T Consensus       670 ~~~Lv~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~~~~~-dr~~~~~  748 (867)
T COG2844         670 GKPLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVEE-DRRAALR  748 (867)
T ss_pred             cCcceeeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCCccch-hHHHHHH
Confidence            4577777777778999999999999999999999999999999999999865 8999999999999999884 6888888


Q ss_pred             HHHHHHHhc---------cC--------------------CCceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecC
Q 017375          247 QCLKAAIER---------RV--------------------SEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKS  297 (372)
Q Consensus       247 ~~L~~~L~~---------r~--------------------~~~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g  297 (372)
                      ..|.+++..         |.                    .+.|+|||.+.||||||++|+++|++++++|++|+|+|.|
T Consensus       749 ~~l~~~l~s~~~~~~~~~r~~r~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~G  828 (867)
T COG2844         749 GELIEALLSGKAQPPRRRRIPRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFG  828 (867)
T ss_pred             HHHHHHHhcCCCCCccccccCcccceeccCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeecccc
Confidence            888888742         10                    1259999999999999999999999999999999999999


Q ss_pred             CeeeeEEEEEcCCCCCCCHHHHHHHHHHHHHhhhcc
Q 017375          298 GKAVNTFYVGGASGYPVDAKIIDSIRQSIGQTILKV  333 (372)
Q Consensus       298 ~~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~~~~~~  333 (372)
                      ++++|+|||++..|.+++.+..+.+.+.+.+++...
T Consensus       829 ErveD~F~vt~~~~~~l~~~~~q~l~~~ll~al~~~  864 (867)
T COG2844         829 ERVEDVFIVTDADGQALNAELRQSLLQRLLEALLPN  864 (867)
T ss_pred             ccceeEEEEeccccccCCHHHHHHHHHHHHHHhccc
Confidence            999999999999999999888888888888877544

>PRK05092 PII uridylyl-transferase; Provisional

Probab=99.92  E-value=3.8e-23  Score=225.60  Aligned_cols=165  Identities=21%  Similarity=0.270  Sum_probs=148.1

Q ss_pred             CCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-eCCeEEEEEEEeeCCCCCCCCHHHHHHHH
Q 017375          168 QRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDA-EGPEAYQEYFIRHIDGSPVKSDAERERVI  246 (372)
Q Consensus       168 ~~~~V~i~~~~~~~~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T-~g~~~~d~F~V~~~~g~~~~~~~~~e~l~  246 (372)
                      .++.|.+.+....+++.|+|+++||||||++|+++|+.+|+||++|+|+| .++++.|+|+|.+++|.+..+++++++|+
T Consensus       718 ~~~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~g~~~~~~~~~~~l~  797 (931)
T PRK05092        718 RPLATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFGRDEDEPRRLARLA  797 (931)
T ss_pred             CCcEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCCCCCCCCHHHHHHHH
Confidence            45778888888889999999999999999999999999999999999998 56999999999999998877777999999


Q ss_pred             HHHHHHHhc----------c-CC---------------------CceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEe
Q 017375          247 QCLKAAIER----------R-VS---------------------EGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVA  294 (372)
Q Consensus       247 ~~L~~~L~~----------r-~~---------------------~~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~  294 (372)
                      +.|..++.+          + .+                     ..|.|+|.+.||||||++|+++|+++|++|.+|+|.
T Consensus       798 ~~L~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~  877 (931)
T PRK05092        798 KAIEDALSGEVRLPEALAKRTKPKKRARAFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIA  877 (931)
T ss_pred             HHHHHHHcCCCCCccccccccCccccccCCCCCCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEE
Confidence            999988732          1 11                     249999999999999999999999999999999999


Q ss_pred             ecCCeeeeEEEEEcCCCCCCCH-HHHHHHHHHHHHhhhc
Q 017375          295 TKSGKAVNTFYVGGASGYPVDA-KIIDSIRQSIGQTILK  332 (372)
Q Consensus       295 T~g~~~~d~F~v~~~~g~~~~~-~~~~~l~~~l~~~~~~  332 (372)
                      |.|+++.|+|||++..|.++.+ +.+++|+++|.+++..
T Consensus       878 T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~~  916 (931)
T PRK05092        878 TYGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALAE  916 (931)
T ss_pred             EcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999865 5788999999988843

>PRK03381 PII uridylyl-transferase; Provisional

Probab=99.91  E-value=3.1e-23  Score=221.77  Aligned_cols=154  Identities=26%  Similarity=0.346  Sum_probs=135.1

Q ss_pred             CCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHH
Q 017375          168 QRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQ  247 (372)
Q Consensus       168 ~~~~V~i~~~~~~~~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~  247 (372)
                      ..+.|.+.+.. .+.+.|+|+++||||||++||++|+.+|+||++|+|+|.+|++.|+|+|.++.|.+.    .++++++
T Consensus       586 ~~~~v~~~~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~~~~~----~~~~l~~  660 (774)
T PRK03381        586 GGVHVEIAPAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRFGSPP----DAALLRQ  660 (774)
T ss_pred             CCCEEEEeeCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcc----hHHHHHH
Confidence            35778888877 899999999999999999999999999999999999998899999999999888653    3577777


Q ss_pred             HHHHHHhc----------c--C----------------------CCceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEE
Q 017375          248 CLKAAIER----------R--V----------------------SEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEV  293 (372)
Q Consensus       248 ~L~~~L~~----------r--~----------------------~~~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i  293 (372)
                      .|..+|.+          +  .                      ...|+|+|.+.||||||++||++|+++|+||++|+|
T Consensus       661 ~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI  740 (774)
T PRK03381        661 DLRRALDGDLDVLARLAAREAAAAAVPVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARV  740 (774)
T ss_pred             HHHHHHcCCCchhhhhhcccccccccccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEE
Confidence            77776642          1  0                      014999999999999999999999999999999999


Q ss_pred             eecCCeeeeEEEEEcCCCCCCCHHHHHHHHHHHH
Q 017375          294 ATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIG  327 (372)
Q Consensus       294 ~T~g~~~~d~F~v~~~~g~~~~~~~~~~l~~~l~  327 (372)
                      .|.|+++.|+|||++..|.+++++ ++.|+++|.
T Consensus       741 ~T~g~~a~D~F~V~d~~g~~~~~~-~~~l~~~L~  773 (774)
T PRK03381        741 ATLGADVVDVFYVTGAAGGPLADA-RAAVEQAVL  773 (774)
T ss_pred             eecCCeEEEEEEEECCCCCcCchH-HHHHHHHhh
Confidence            999999999999999999999876 777777764

>PRK03059 PII uridylyl-transferase; Provisional

Probab=99.91  E-value=1.1e-22  Score=219.46  Aligned_cols=158  Identities=16%  Similarity=0.244  Sum_probs=137.5

Q ss_pred             CCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEeeCCCCCCCCHHHHHHHHH
Q 017375          169 RPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE-GPEAYQEYFIRHIDGSPVKSDAERERVIQ  247 (372)
Q Consensus       169 ~~~V~i~~~~~~~~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~-g~~~~d~F~V~~~~g~~~~~~~~~e~l~~  247 (372)
                      .+.|.+.+....+.+.|+|+++||||||++||++|+.+|+||++|+|+|. +|.++|+|+|.+++|. ...+++++++++
T Consensus       665 ~~~v~~~~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~~-~~~~~~~~~i~~  743 (856)
T PRK03059        665 TPIVRARLSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPEED-VHYRDIINLVEH  743 (856)
T ss_pred             CCeEEEEecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCCC-CChHHHHHHHHH
Confidence            46666888888899999999999999999999999999999999999875 6999999999998777 445569999999


Q ss_pred             HHHHHHhcc------------------------------CCCceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecC
Q 017375          248 CLKAAIERR------------------------------VSEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKS  297 (372)
Q Consensus       248 ~L~~~L~~r------------------------------~~~~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g  297 (372)
                      .|..+|.++                              .+..|.|+|.+.|||||||+||.+|+.+|++|+.|+|.|.|
T Consensus       744 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~  823 (856)
T PRK03059        744 ELAERLAEQAPLPEPSKGRLSRQVKHFPITPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLG  823 (856)
T ss_pred             HHHHHHcCCCCcchhhcccccccccCCCCCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeecC
Confidence            999988531                              01259999999999999999999999999999999999999


Q ss_pred             CeeeeEEEEEcCCCCCC-CHHHHHHHHHHHHHhh
Q 017375          298 GKAVNTFYVGGASGYPV-DAKIIDSIRQSIGQTI  330 (372)
Q Consensus       298 ~~~~d~F~v~~~~g~~~-~~~~~~~l~~~l~~~~  330 (372)
                      +++.|+|||++.   +. ++++++.|+++|.+++
T Consensus       824 ~~v~DvF~V~~~---~~~~~~~~~~l~~~L~~~L  854 (856)
T PRK03059        824 ERVEDTFLIDGS---GLSDNRLQIQLETELLDAL  854 (856)
T ss_pred             CEEEEEEEEcCC---CCCCHHHHHHHHHHHHHHh
Confidence            999999999533   34 4568899999998765

>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.82  E-value=5.8e-20  Score=139.44  Aligned_cols=73  Identities=16%  Similarity=0.214  Sum_probs=68.2

Q ss_pred             ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCCH-HHHHHHHHHHHHhhhc
Q 017375          260 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDA-KIIDSIRQSIGQTILK  332 (372)
Q Consensus       260 ~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~~~~g~~~~~-~~~~~l~~~l~~~~~~  332 (372)
                      .|+|||.++|||||||+|+++|.++|++|++|+|+|+|+++.|+|||++.+|.|+.+ ++++.|+++|.+++.+
T Consensus         1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~~   74 (75)
T cd04897           1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIER   74 (75)
T ss_pred             CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHhc
Confidence            489999999999999999999999999999999999999999999999999999965 5789999999988743

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.82  E-value=1.1e-19  Score=136.87  Aligned_cols=69  Identities=19%  Similarity=0.357  Sum_probs=64.7

Q ss_pred             ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCC-HHHHHHHHHHHHH
Q 017375          260 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVD-AKIIDSIRQSIGQ  328 (372)
Q Consensus       260 ~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~~~~g~~~~-~~~~~~l~~~l~~  328 (372)
                      .|+|||.+.|||||||+|+++|+++|++|++|+|+|+|++++|+|||++..|.|++ ++.++.|+++|..
T Consensus         1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~~   70 (72)
T cd04895           1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLGT   70 (72)
T ss_pred             CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhcc
Confidence            48999999999999999999999999999999999999999999999999999996 4688899998764

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.81  E-value=3.4e-19  Score=135.24  Aligned_cols=75  Identities=67%  Similarity=1.153  Sum_probs=72.0

Q ss_pred             eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhcc
Q 017375          182 YSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERR  256 (372)
Q Consensus       182 ~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~r  256 (372)
                      +|+|+|.|+||||||++|+++|+++|++|+.|+|.|.|+++.|+|||++.+|.++.++++.+.|+++|.++|.+|
T Consensus         1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~~~   75 (75)
T cd04897           1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIERR   75 (75)
T ss_pred             CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHhcC
Confidence            589999999999999999999999999999999999999999999999999999999889999999999999764

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.78  E-value=1.2e-18  Score=132.19  Aligned_cols=70  Identities=17%  Similarity=0.314  Sum_probs=65.5

Q ss_pred             eEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEe--ecCCeeeeEEEEEcCCCCCCCH-HHHHHHHHHHHHhhh
Q 017375          261 LKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVA--TKSGKAVNTFYVGGASGYPVDA-KIIDSIRQSIGQTIL  331 (372)
Q Consensus       261 t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~--T~g~~~~d~F~v~~~~g~~~~~-~~~~~l~~~l~~~~~  331 (372)
                      |+|+|.+.|||||||+|+++|+++|++|++|+|+  |+|++++|+||| +..|.++++ ++++.|+++|.++++
T Consensus         1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~~g~kl~d~~~~~~L~~~L~~~l~   73 (75)
T cd04896           1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QSDGKKIMDPKKQAALCARLREEMV   73 (75)
T ss_pred             CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eCCCCccCCHHHHHHHHHHHHHHhc
Confidence            6899999999999999999999999999999999  999999999999 888989854 688999999998874

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.74  E-value=1.6e-17  Score=125.22  Aligned_cols=69  Identities=19%  Similarity=0.336  Sum_probs=65.3

Q ss_pred             eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHH
Q 017375          182 YSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLK  250 (372)
Q Consensus       182 ~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~  250 (372)
                      +|+|+|.++||||||++|+++|+++|++|+.|+|.|.|++++|+|||++.+|.++.++++++.|++.|.
T Consensus         1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~   69 (72)
T cd04895           1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLG   69 (72)
T ss_pred             CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhc
Confidence            589999999999999999999999999999999999999999999999999999998778888888775

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.69  E-value=2.4e-16  Score=120.35  Aligned_cols=73  Identities=63%  Similarity=0.953  Sum_probs=67.2

Q ss_pred             EEEEEEecCccchHHHHHHHHHhcCceEEEEEEEecCCceEEEEEEecCCC-CCCCCCHHHHHHHHHHHHHhhcC
Q 017375           49 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEET-GGAISDPERLSVIKELLCNVLKG  122 (372)
Q Consensus        49 t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~~~~~d~F~V~~~~~-g~~i~~~~~~~~l~~~L~~~L~~  122 (372)
                      |.|+|+++||||||++|+++|+.+||||++|+|+|.++++.|+|+|+++ + +.++.+++++++|++.|.++|.+
T Consensus         1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~-~~~~~~~~~~~~~~i~~~L~~~l~g   74 (74)
T cd04925           1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDE-ETGAPIDDPIRLASIEDRLDNVLRG   74 (74)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcC-cCCCCCCCHHHHHHHHHHHHHHhcC
Confidence            5799999999999999999999999999999999999999999999984 5 77787888999999999988753

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=99.69  E-value=4.7e-16  Score=139.29  Aligned_cols=141  Identities=15%  Similarity=0.177  Sum_probs=110.0

Q ss_pred             CCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHh----
Q 017375          179 DKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIE----  254 (372)
Q Consensus       179 ~~~~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~----  254 (372)
                      ...+.+|++.|+||||+++.++++|+++||||.+.+....++.+.-++.|.   +.+    ...+.|+..|...-.    
T Consensus         5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs---~~~----~~~~~le~~L~~l~~~~~L   77 (190)
T PRK11589          5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLS---GSW----NAITLIESTLPLKGAELDL   77 (190)
T ss_pred             cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEe---CCh----hHHHHHHHHHHhhhhhcCe
Confidence            346889999999999999999999999999999999999999998888884   332    245666666554321    


Q ss_pred             ----ccC--------CCceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCC--eeeeEEEEEcCCCCCCCHHHHH
Q 017375          255 ----RRV--------SEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSG--KAVNTFYVGGASGYPVDAKIID  320 (372)
Q Consensus       255 ----~r~--------~~~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~--~~~d~F~v~~~~g~~~~~~~~~  320 (372)
                          ++.        +..+.++|.|.||||++++||++|+++|+||..++..|++.  ...+.|.+.-.-..|.+. .++
T Consensus        78 ~i~v~~~~~~~~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~~-~~~  156 (190)
T PRK11589         78 LIVMKRTTARPRPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPASQ-DAA  156 (190)
T ss_pred             EEEEEeccccccccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCCCC-CHH
Confidence                121        12489999999999999999999999999999999999985  677888886555555443 234


Q ss_pred             HHHHHHH
Q 017375          321 SIRQSIG  327 (372)
Q Consensus       321 ~l~~~l~  327 (372)
                      .|+++|.
T Consensus       157 ~L~~~l~  163 (190)
T PRK11589        157 NIEQAFK  163 (190)
T ss_pred             HHHHHHH
Confidence            4555444

>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.68  E-value=2.7e-16  Score=119.43  Aligned_cols=71  Identities=14%  Similarity=0.283  Sum_probs=67.1

Q ss_pred             EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEE--eeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHh
Q 017375          183 SVVTITSKDRPKLVFDTVCTLTDMQYVVFHANID--AEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIE  254 (372)
Q Consensus       183 t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~--T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~  254 (372)
                      |+++|.++|||||||+|+++|+++|++|+.|+|.  |.|++++|+||| +.+|.++.++++.+.|+++|.+++.
T Consensus         1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~~g~kl~d~~~~~~L~~~L~~~l~   73 (75)
T cd04896           1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QSDGKKIMDPKKQAALCARLREEMV   73 (75)
T ss_pred             CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eCCCCccCCHHHHHHHHHHHHHHhc
Confidence            5899999999999999999999999999999999  999999999999 7889899887789999999998875

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.67  E-value=4.7e-16  Score=118.33  Aligned_cols=72  Identities=32%  Similarity=0.507  Sum_probs=65.2

Q ss_pred             eEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEec-CCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHhh
Q 017375           48 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH-NTRAAALMQVTDEETGGAISDPERLSVIKELLCNVL  120 (372)
Q Consensus        48 ~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~-~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~L  120 (372)
                      .++|+|+++||||||++++++|+.+|+||++|+|+|. +|+++|+|+|++ .++.++.+++++++|++.|.++|
T Consensus         1 ~~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~-~~~~~~~~~~~~~~l~~~L~~~l   73 (73)
T cd04900           1 GTEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLD-PDGEPIGERERLARIREALEDAL   73 (73)
T ss_pred             CEEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEEC-CCCCCCChHHHHHHHHHHHHhhC
Confidence            3689999999999999999999999999999999997 799999999998 57877777889999999988754

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.63  E-value=2.7e-15  Score=115.11  Aligned_cols=72  Identities=31%  Similarity=0.353  Sum_probs=64.4

Q ss_pred             EEEEEecCccchHHHHHHHHHhcCceEEEEEEEe-cCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHhhcCC
Q 017375           50 AIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT-HNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKGS  123 (372)
Q Consensus        50 ~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T-~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~L~~~  123 (372)
                      .++|+++||||||++++++|+.+|+||++|+|+| .+|+++|+|+|+++ .+. ..+++++++|++.|.++|.+.
T Consensus         2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~-~~~-~~~~~~~~~l~~~L~~~L~~~   74 (76)
T cd04927           2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDA-REL-LHTKKRREETYDYLRAVLGDS   74 (76)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCC-CCC-CCCHHHHHHHHHHHHHHHchh
Confidence            6899999999999999999999999999999997 79999999999984 555 456789999999999988653

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.62  E-value=4.4e-15  Score=113.29  Aligned_cols=72  Identities=18%  Similarity=0.332  Sum_probs=67.4

Q ss_pred             EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCC-CCCCCCHHHHHHHHHHHHHHHh
Q 017375          183 SVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHID-GSPVKSDAERERVIQCLKAAIE  254 (372)
Q Consensus       183 t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~-g~~~~~~~~~e~l~~~L~~~L~  254 (372)
                      |+|+|+++||||||++|+++|+.+|+||++|+|+|.++++.|+|+|.+++ |.++.++++++++++.|.++|.
T Consensus         1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l~   73 (74)
T cd04925           1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVLR   73 (74)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHhc
Confidence            58999999999999999999999999999999999999999999999987 8888777789999999998874

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.60  E-value=7.2e-15  Score=111.76  Aligned_cols=71  Identities=23%  Similarity=0.338  Sum_probs=65.4

Q ss_pred             EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHH
Q 017375          183 SVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE-GPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAI  253 (372)
Q Consensus       183 t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~-g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L  253 (372)
                      +.|+|+++||||||++++++|+.+|+||++|+|.|. +++++|+|+|++++|.++.++++++++++.|.++|
T Consensus         2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~~l   73 (73)
T cd04900           2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALEDAL   73 (73)
T ss_pred             EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHhhC
Confidence            689999999999999999999999999999999998 59999999999999988877679999999987754

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.56  E-value=3.3e-14  Score=109.04  Aligned_cols=70  Identities=27%  Similarity=0.407  Sum_probs=63.3

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEee-cCCeeeeEEEEEcCCCCCCCHHHHHHHHHHHHHhhh
Q 017375          262 KLELCTTDRVGLLSNVTRIFRENSLTVTRAEVAT-KSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQTIL  331 (372)
Q Consensus       262 ~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T-~g~~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~~~~  331 (372)
                      ++||.++||||||++|+++|+++|++|.+|+|.| .++++.|+|||+|..|...+++++++++++|.+++.
T Consensus         2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~~~~~~~~~~l~~~L~~~L~   72 (76)
T cd04927           2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRREETYDYLRAVLG   72 (76)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHc
Confidence            6899999999999999999999999999999996 899999999999987774455688889999988764

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=99.52  E-value=5e-13  Score=119.83  Aligned_cols=156  Identities=14%  Similarity=0.166  Sum_probs=110.2

Q ss_pred             CCCCeEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEecCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHhhcCC
Q 017375           44 QSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKGS  123 (372)
Q Consensus        44 ~~~~~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~L~~~  123 (372)
                      ++..+.+|+++|+||||+.+.++++|+++||||.+.+....+|.+.-++.|+.+     +   ..+++|+..|.. +...
T Consensus         4 ~m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~~-----~---~~~~~le~~L~~-l~~~   74 (190)
T PRK11589          4 SSQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSGS-----W---NAITLIESTLPL-KGAE   74 (190)
T ss_pred             CcccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeCC-----h---hHHHHHHHHHHh-hhhh
Confidence            356789999999999999999999999999999999999999999999988542     2   356788877764 3322


Q ss_pred             CCCCcccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHH
Q 017375          124 NKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTL  203 (372)
Q Consensus       124 ~~~~~~~~~l~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~v~V~~~DrpGLL~~i~~~L  203 (372)
                      ..+   ...+        +|..       .           +.  ..       .......|+|++.||||++++++++|
T Consensus        75 ~~L---~i~v--------~~~~-------~-----------~~--~~-------~~~~~~~v~v~G~DrPGIV~~vT~~l  116 (190)
T PRK11589         75 LDL---LIVM--------KRTT-------A-----------RP--RP-------AMPATVWVQVEVADSPHLIERFTALF  116 (190)
T ss_pred             cCe---EEEE--------Eecc-------c-----------cc--cc-------cCCceEEEEEEECCCCCHHHHHHHHH
Confidence            222   1111        1110       0           00  00       01113689999999999999999999


Q ss_pred             HhCCceEEEEEEEeeCC------eEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHH
Q 017375          204 TDMQYVVFHANIDAEGP------EAYQEYFIRHIDGSPVKSDAERERVIQCLKAA  252 (372)
Q Consensus       204 ~~~glnI~~A~I~T~g~------~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~  252 (372)
                      +++|+||.+-+-.|.+.      .+.-.|.+.-|.+..      .+.|+..|...
T Consensus       117 a~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~~~------~~~L~~~l~~l  165 (190)
T PRK11589        117 DSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPASQD------AANIEQAFKAL  165 (190)
T ss_pred             HHcCCChhheEEeeecCCCCCcccEEEEEEEEcCCCCC------HHHHHHHHHHH
Confidence            99999999988887752      455556665554432      34455555444

>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]

Probab=99.48  E-value=1.9e-13  Score=117.68  Aligned_cols=141  Identities=18%  Similarity=0.234  Sum_probs=112.7

Q ss_pred             CCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHh-----
Q 017375          180 KDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIE-----  254 (372)
Q Consensus       180 ~~~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~-----  254 (372)
                      .+|.+|+++++||||+...++++..++||||.++++...|+.+.-+..|.   |.|    +...+|+..|...=.     
T Consensus         3 ~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lis---gs~----dav~~le~~l~~l~~~~~L~   75 (176)
T COG2716           3 EHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLIS---GSW----DAVTLLEATLPLLGAELDLL   75 (176)
T ss_pred             ccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEe---eCH----HHHHHHHHHhhcccccCCeE
Confidence            46789999999999999999999999999999999999999988777775   443    345566665543211     


Q ss_pred             ---ccC--------CCceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeec--CCeeeeEEEEEcCCCCCCCHHHHHH
Q 017375          255 ---RRV--------SEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATK--SGKAVNTFYVGGASGYPVDAKIIDS  321 (372)
Q Consensus       255 ---~r~--------~~~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~--g~~~~d~F~v~~~~g~~~~~~~~~~  321 (372)
                         .|.        +..+.++|.+.||||++.++|++|..+|++|+++...|+  .......|++.-.-+.|.+. .+..
T Consensus        76 v~m~rt~~~~~~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa~~-~i~~  154 (176)
T COG2716          76 VVMKRTGAHPTPANPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLPANL-SISA  154 (176)
T ss_pred             EEEeecCCCccCCCCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhccCCCcC-cHHH
Confidence               121        236999999999999999999999999999999999998  34577799997667778776 4566


Q ss_pred             HHHHHHH
Q 017375          322 IRQSIGQ  328 (372)
Q Consensus       322 l~~~l~~  328 (372)
                      |+++|+.
T Consensus       155 l~~~f~a  161 (176)
T COG2716         155 LRDAFEA  161 (176)
T ss_pred             HHHHHHH
Confidence            6666554

>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains

Probab=99.45  E-value=7e-13  Score=98.74  Aligned_cols=65  Identities=25%  Similarity=0.403  Sum_probs=54.8

Q ss_pred             EEEEEEecCccchHHHHHHHHHhcCceEEEEEEEe-cCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHhh
Q 017375           49 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT-HNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVL  120 (372)
Q Consensus        49 t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T-~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~L  120 (372)
                      .+|.|+++||||||++|+++|+.+|+||++|+|+| .+|+++|+|+|.+ .+|.   ++   +.|++.|.++|
T Consensus         2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d-~~~~---~~---~~~~~~~~~~~   67 (68)
T cd04928           2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTG-WKRG---ET---AALGHALQKEI   67 (68)
T ss_pred             EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEec-CCcc---ch---HHHHHHHHHhh
Confidence            57999999999999999999999999999999998 5899999999998 4553   22   45666665544

This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.43  E-value=1.3e-12  Score=99.13  Aligned_cols=67  Identities=31%  Similarity=0.495  Sum_probs=60.2

Q ss_pred             EEEEEEecCccchHHHHHHHHHhcCceEEEEEEEecCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHH
Q 017375           49 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLC  117 (372)
Q Consensus        49 t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~  117 (372)
                      ++|+|+++||||+|++|+++|+.+|+||++|+++|.++++.|+|+|++ .++.++ +++++++|++.|-
T Consensus         2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~-~~~~~~-~~~~~~~l~~~l~   68 (72)
T cd04926           2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTD-ANGNPV-DPKTIEAVRQEIG   68 (72)
T ss_pred             eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEEC-CCCCcC-CHHHHHHHHHHhc
Confidence            689999999999999999999999999999999998889999999998 477777 6678888877764

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK00227 glnD PII uridylyl-transferase; Provisional

Probab=99.38  E-value=2.3e-11  Score=128.09  Aligned_cols=143  Identities=14%  Similarity=0.118  Sum_probs=117.3

Q ss_pred             EEEEEEe-cCccchHHHHHHHHHhcCceEEEEEEEecCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCC
Q 017375           49 TAIELTG-SDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKGSNKSG  127 (372)
Q Consensus        49 t~i~v~~-~DrpGLl~~i~~~l~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~L~~~~~~~  127 (372)
                      -.++|.. +|++|+|.+++++|+.+|++|++|++.+ +|.++..|.|.. ..|.+. ++   ..+++.+...+.++.+..
T Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~-~~~~~~-~~---~~~~~~~~~~~~~~~~~~  620 (693)
T PRK00227        547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRA-NGPQDF-DP---QEFLQAYKSGVYSELPDP  620 (693)
T ss_pred             CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEec-CCCCCC-Ch---HHHHHHHHHhhcCCCCcc
Confidence            5777777 9999999999999999999999999999 889999999998 577765 55   678888888887765431


Q ss_pred             cccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHhCC
Q 017375          128 LAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQ  207 (372)
Q Consensus       128 ~~~~~l~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~v~V~~~DrpGLL~~i~~~L~~~g  207 (372)
                                                            ...+|.+.|..      ++++|.+.||+|+|+.++++|.   
T Consensus       621 --------------------------------------~~~~~~~~~~~------~~~e~r~~dr~g~l~~~~~~l~---  653 (693)
T PRK00227        621 --------------------------------------APGITATFWHG------NILEVRTEDRRGALGALLGVLP---  653 (693)
T ss_pred             --------------------------------------cCCCCceEeeC------cEEEEEeCccccHHHHHHHHhh---
Confidence                                                  01346666653      7999999999999999999999   


Q ss_pred             ceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHH
Q 017375          208 YVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAI  253 (372)
Q Consensus       208 lnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L  253 (372)
                       +|.+|++.|.|..++|.|++..  |      .....++..+..+|
T Consensus       654 -~~~~~~~~~~g~~~~~~~~~~~--~------~~r~~~~~~~~~~~  690 (693)
T PRK00227        654 -DLLWITASTPGATMIVQAALKP--G------FDRATVERDVTRVL  690 (693)
T ss_pred             -hhhhHhhcCCCcceEEEEEecC--c------ccHHHHHHHHHHHH
Confidence             8999999999999999999972  1      12355666666655

>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.34  E-value=9.6e-12  Score=94.30  Aligned_cols=69  Identities=64%  Similarity=0.971  Sum_probs=62.8

Q ss_pred             ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 017375          260 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQ  328 (372)
Q Consensus       260 ~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~  328 (372)
                      ++.|+|.++||||+|++|+.+|+++|++|.+|++.|.++.+.|+|+|.+.+|.+++++++++++++|+.
T Consensus         1 gtri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~~~~~~~~~l~~~l~~   69 (72)
T cd04926           1 GVRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPVDPKTIEAVRQEIGP   69 (72)
T ss_pred             CeEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCcCCHHHHHHHHHHhcc
Confidence            478999999999999999999999999999999999988999999999999988866677888888764

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK00227 glnD PII uridylyl-transferase; Provisional

Probab=99.34  E-value=1.3e-11  Score=130.06  Aligned_cols=116  Identities=16%  Similarity=0.214  Sum_probs=101.6

Q ss_pred             EEEEEEe-cCCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhccC----
Q 017375          183 SVVTITS-KDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRV----  257 (372)
Q Consensus       183 t~v~V~~-~DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~r~----  257 (372)
                      -.++|.. +|++|+|.+++++|+.++++|++|++.+ +|.+...|.|....|.+.+.    ..+++.+..++.+..    
T Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~  621 (693)
T PRK00227        547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDFDP----QEFLQAYKSGVYSELPDPA  621 (693)
T ss_pred             CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCCCh----HHHHHHHHHhhcCCCCccc
Confidence            4777777 9999999999999999999999999999 78888999999888877655    566777777765432    


Q ss_pred             ---C----CceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEE
Q 017375          258 ---S----EGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVG  307 (372)
Q Consensus       258 ---~----~~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~  307 (372)
                         |    .++++||++.||||+|++|+++|.    +|.+|+++|.|..+.|+||+.
T Consensus       622 ~~~~~~~~~~~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~  674 (693)
T PRK00227        622 PGITATFWHGNILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALK  674 (693)
T ss_pred             CCCCceEeeCcEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEec
Confidence               1    158999999999999999999999    899999999999999999996

>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.31  E-value=1.8e-11  Score=91.75  Aligned_cols=70  Identities=43%  Similarity=0.633  Sum_probs=62.6

Q ss_pred             EEEEEEecCccchHHHHHHHHHhcCceEEEEEEEecCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHhh
Q 017375           49 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVL  120 (372)
Q Consensus        49 t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~L  120 (372)
                      |.|.|.++|+||+|++|+++|+.+|+||.++++.|.++.+.|+|+|++ .++.+. +.++|++|++.|.+++
T Consensus         1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~-~~~~~~-~~~~~~~i~~~l~~~~   70 (70)
T cd04899           1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTD-ADGQPL-DPERQEALRAALGEAL   70 (70)
T ss_pred             CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEEC-CCCCcC-CHHHHHHHHHHHHhhC
Confidence            578999999999999999999999999999999998889999999998 477774 6679999999987653

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains

Probab=99.31  E-value=1.7e-11  Score=91.35  Aligned_cols=65  Identities=17%  Similarity=0.203  Sum_probs=55.2

Q ss_pred             EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHH
Q 017375          183 SVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE-GPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAI  253 (372)
Q Consensus       183 t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~-g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L  253 (372)
                      ..|.|+++||||||++++++|+.+|+||++|+|.|. +|+++|+|+|.+.+|.-      -+.|+++|.++|
T Consensus         2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~~------~~~~~~~~~~~~   67 (68)
T cd04928           2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRGE------TAALGHALQKEI   67 (68)
T ss_pred             EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCccc------hHHHHHHHHHhh
Confidence            478999999999999999999999999999999986 59999999999887742      245666666554

This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.28  E-value=4e-11  Score=89.80  Aligned_cols=69  Identities=38%  Similarity=0.632  Sum_probs=63.8

Q ss_pred             eEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCCHHHHHHHHHHHHHh
Q 017375          261 LKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQT  329 (372)
Q Consensus       261 t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~~  329 (372)
                      |.++|.++||||+|++|+++|+++|++|.++++.|.++.+.|+|++++..|.+.+.+.+++|+++|.++
T Consensus         1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~i~~~l~~~   69 (70)
T cd04899           1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPLDPERQEALRAALGEA   69 (70)
T ss_pred             CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCcCCHHHHHHHHHHHHhh
Confidence            679999999999999999999999999999999999889999999999999987667888899988765

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]

Probab=99.19  E-value=2.3e-10  Score=98.81  Aligned_cols=159  Identities=13%  Similarity=0.162  Sum_probs=109.2

Q ss_pred             CCCeEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEecCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHhhcCCC
Q 017375           45 SMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKGSN  124 (372)
Q Consensus        45 ~~~~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~L~~~~  124 (372)
                      ++++.+|++++.||||+...|+++..++||||.++|+.+.|+.+.-+..|+-+     |   +...+|++.|. .+..+.
T Consensus         2 ~~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lisgs-----~---dav~~le~~l~-~l~~~~   72 (176)
T COG2716           2 MEHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLISGS-----W---DAVTLLEATLP-LLGAEL   72 (176)
T ss_pred             CccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEeeC-----H---HHHHHHHHHhh-cccccC
Confidence            45679999999999999999999999999999999999999999999988742     3   45678888775 344444


Q ss_pred             CCCcccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHH
Q 017375          125 KSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLT  204 (372)
Q Consensus       125 ~~~~~~~~l~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~v~V~~~DrpGLL~~i~~~L~  204 (372)
                      ++   ...+        .|..       +              .++      ....-.+.+.|.+.||||++.++++.|.
T Consensus        73 ~L---~v~m--------~rt~-------~--------------~~~------~a~~~~v~v~v~a~DrpgIv~~~T~lf~  114 (176)
T COG2716          73 DL---LVVM--------KRTG-------A--------------HPT------PANPAPVWVYVDANDRPGIVEEFTALFD  114 (176)
T ss_pred             Ce---EEEE--------eecC-------C--------------Ccc------CCCCceEEEEEEecCCccHHHHHHHHHH
Confidence            43   1111        1110       0              000      0122346899999999999999999999


Q ss_pred             hCCceEEEEEEEeeC--CeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHH
Q 017375          205 DMQYVVFHANIDAEG--PEAYQEYFIRHIDGSPVKSDAERERVIQCLKAA  252 (372)
Q Consensus       205 ~~glnI~~A~I~T~g--~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~  252 (372)
                      .+|+||.+....|..  +.-.-.|.+.-.-+-|..-  ....|++++++.
T Consensus       115 ~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa~~--~i~~l~~~f~al  162 (176)
T COG2716         115 GHGINIENLVSRTYPAPGSSAPLFHAQITARLPANL--SISALRDAFEAL  162 (176)
T ss_pred             hcCCchhhceeeeeecCCCCccceehhhhccCCCcC--cHHHHHHHHHHH
Confidence            999999988887753  2222234443222223322  334555555544

>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

Probab=99.01  E-value=3.6e-09  Score=78.78  Aligned_cols=69  Identities=38%  Similarity=0.623  Sum_probs=59.7

Q ss_pred             EEEEEEecCccchHHHHHHHHHhcCceEEEEEEEecCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHh
Q 017375           49 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNV  119 (372)
Q Consensus        49 t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~  119 (372)
                      +.|.|.++|+||+|++|+++|+.+|++|.++++.+.+++..++|+|..+ ++.+. +++++++|++.|.+.
T Consensus         1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~-~~~~~-~~~~~~~l~~~l~~~   69 (70)
T cd04873           1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDS-DGRPL-DPERIARLEEALEDA   69 (70)
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECC-CCCcC-CHHHHHHHHHHHHhh
Confidence            3688999999999999999999999999999999976688899999884 55554 557889999988764

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t

>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

Probab=98.96  E-value=9.6e-09  Score=76.42  Aligned_cols=69  Identities=28%  Similarity=0.580  Sum_probs=61.0

Q ss_pred             eEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCCHHHHHHHHHHHHHh
Q 017375          261 LKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQT  329 (372)
Q Consensus       261 t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~~  329 (372)
                      +.|.|.+.|+||+|++|+++|+++|++|.++.+.+.++...++|++.+..+.+.+.++.+.+++.|...
T Consensus         1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~   69 (70)
T cd04873           1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPLDPERIARLEEALEDA   69 (70)
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCCCCcCCHHHHHHHHHHHHhh
Confidence            468999999999999999999999999999999998779999999998887776656788888887653

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A

Probab=98.67  E-value=2.1e-07  Score=71.13  Aligned_cols=64  Identities=25%  Similarity=0.430  Sum_probs=53.6

Q ss_pred             eEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEecCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHh
Q 017375           48 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNV  119 (372)
Q Consensus        48 ~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~  119 (372)
                      +..|+++++||||+++.++++|+++||||.+.+..+.++.+.-++.|.-+        ++..++|++.|.+.
T Consensus         2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~--------~~~~~~l~~~L~~l   65 (76)
T PF13740_consen    2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP--------EDSLERLESALEEL   65 (76)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES--------HHHHHHHHHHHHHH
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC--------cccHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999989752        34667888888764

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A

Probab=98.67  E-value=3.2e-07  Score=70.12  Aligned_cols=65  Identities=17%  Similarity=0.169  Sum_probs=53.7

Q ss_pred             eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHH
Q 017375          182 YSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAI  253 (372)
Q Consensus       182 ~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L  253 (372)
                      +.+|++.|+||||+++.++++|+++|+||.+.+..+.++.+.-.+.|.-+       ++..++|+.+|....
T Consensus         2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~-------~~~~~~l~~~L~~l~   66 (76)
T PF13740_consen    2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP-------EDSLERLESALEELA   66 (76)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES-------HHHHHHHHHHHHHHH
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC-------cccHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999988888653       246678888877653

>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=98.43  E-value=8.4e-07  Score=63.73  Aligned_cols=67  Identities=16%  Similarity=0.252  Sum_probs=58.4

Q ss_pred             EEEEEEecCccchHHHHHHHHHhcCceEEEEEEEecCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHh
Q 017375           49 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNV  119 (372)
Q Consensus        49 t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~  119 (372)
                      ++|+|.+||+.||=.+|++++.+.|++|..+.+.|.|....-+|+|...  ..++  +-+|..|+++|.++
T Consensus         1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~--~~~~--~~rW~lLK~RL~~~   67 (69)
T cd04894           1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPR--PPSI--KVRWDLLKNRLMSA   67 (69)
T ss_pred             CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecC--CCCC--cccHHHHHHHHHhc
Confidence            4799999999999999999999999999999999999999999999862  2222  35899999998754

This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold

Probab=98.43  E-value=3.2e-06  Score=61.87  Aligned_cols=62  Identities=16%  Similarity=0.163  Sum_probs=47.4

Q ss_pred             EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCC--eEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHH
Q 017375          183 SVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGP--EAYQEYFIRHIDGSPVKSDAERERVIQCLKAA  252 (372)
Q Consensus       183 t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g~--~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~  252 (372)
                      +.|.|.++||||+|++++++|+++|+||..+.+.+.++  .....+.+.+.        ...+.+.+.|.+.
T Consensus         1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~   64 (66)
T PF01842_consen    1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVDE--------EDLEKLLEELEAL   64 (66)
T ss_dssp             EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEEG--------HGHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECCC--------CCHHHHHHHHHcc
Confidence            57889999999999999999999999999999999876  44444444332        3455666666543

ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....

>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=98.40  E-value=1.2e-06  Score=66.76  Aligned_cols=50  Identities=18%  Similarity=0.232  Sum_probs=42.4

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCC
Q 017375          262 KLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASG  311 (372)
Q Consensus       262 ~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~~~~g  311 (372)
                      +++|.|+||||++++||++|+++|+||...+-.+.++.-.-.|.+.-+.+
T Consensus         1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~   50 (75)
T cd04870           1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDS   50 (75)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCC
Confidence            37899999999999999999999999999998888877666666654433

The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=98.39  E-value=1.3e-06  Score=62.69  Aligned_cols=67  Identities=18%  Similarity=0.252  Sum_probs=58.5

Q ss_pred             EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHH
Q 017375          183 SVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAA  252 (372)
Q Consensus       183 t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~  252 (372)
                      ++|+|.|||+.||=.++++++.+.|++|..+.++|.|.+..-+|+|... ...+.  -+|..|+++|..+
T Consensus         1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~-~~~~~--~rW~lLK~RL~~~   67 (69)
T cd04894           1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPR-PPSIK--VRWDLLKNRLMSA   67 (69)
T ss_pred             CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecC-CCCCc--ccHHHHHHHHHhc
Confidence            4799999999999999999999999999999999999999999999853 22332  3899999998764

This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=98.37  E-value=2e-06  Score=65.43  Aligned_cols=64  Identities=16%  Similarity=0.165  Sum_probs=51.2

Q ss_pred             EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHH
Q 017375          184 VVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAI  253 (372)
Q Consensus       184 ~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L  253 (372)
                      +|+|.++||||++++++++|+++|+||.+.+..+.++.+.-.|.+.-+.+.      ..+.|++.|....
T Consensus         1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~~------~~~~l~~~l~~l~   64 (75)
T cd04870           1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDSA------DSEALLKDLLFKA   64 (75)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCCC------CHHHHHHHHHHHH
Confidence            478999999999999999999999999999999999888888888654331      2355666655443

The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=98.36  E-value=3.2e-06  Score=64.74  Aligned_cols=62  Identities=11%  Similarity=0.162  Sum_probs=49.6

Q ss_pred             EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHH
Q 017375          183 SVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKA  251 (372)
Q Consensus       183 t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~  251 (372)
                      .+|++.|+||||+++.++++|+++|+||.+++.++.++++.-...+.-+   +.    ..+.|++.|..
T Consensus         2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~---~~----~~~~l~~~l~~   63 (77)
T cd04893           2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGS---WD----AIAKLEAALPG   63 (77)
T ss_pred             EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEec---cc----cHHHHHHHHHH
Confidence            5899999999999999999999999999999999998888666655432   21    23566666554

This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int

>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold

Probab=98.35  E-value=4.1e-06  Score=61.25  Aligned_cols=61  Identities=25%  Similarity=0.329  Sum_probs=45.7

Q ss_pred             EEEEEEecCccchHHHHHHHHHhcCceEEEEEEEecCC--ceEEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017375           49 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNT--RAAALMQVTDEETGGAISDPERLSVIKELLCN  118 (372)
Q Consensus        49 t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~~--~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~  118 (372)
                      +.|.|.++||||+|++++.+|+++|+||..+.+.+..+  ....++.+.+         ....+++.+.|++
T Consensus         1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~   63 (66)
T PF01842_consen    1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVD---------EEDLEKLLEELEA   63 (66)
T ss_dssp             EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEE---------GHGHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECC---------CCCHHHHHHHHHc
Confidence            57899999999999999999999999999999999765  3333333333         1333566666654

ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....

>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=98.34  E-value=2.8e-06  Score=65.06  Aligned_cols=62  Identities=24%  Similarity=0.378  Sum_probs=50.5

Q ss_pred             EEEEEEecCccchHHHHHHHHHhcCceEEEEEEEecCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017375           49 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCN  118 (372)
Q Consensus        49 t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~  118 (372)
                      ..|++.|+||||+.+.++++|+++|+||.+.+.++.++.+.-.+.+..+    ..    ..+.|++.|..
T Consensus         2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~----~~----~~~~l~~~l~~   63 (77)
T cd04893           2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGS----WD----AIAKLEAALPG   63 (77)
T ss_pred             EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEec----cc----cHHHHHHHHHH
Confidence            6789999999999999999999999999999999988887666666531    11    23677777765

This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int

>COG4747 ACT domain-containing protein [General function prediction only]

Probab=98.27  E-value=5.3e-05  Score=61.69  Aligned_cols=110  Identities=15%  Similarity=0.145  Sum_probs=81.2

Q ss_pred             EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhc-cCCCceE
Q 017375          184 VVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER-RVSEGLK  262 (372)
Q Consensus       184 ~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~-r~~~~t~  262 (372)
                      ++.|...++||-|+.++.+|.++|+||....|.-.++.-.-.+.|.++           +.-.+.|.++  + -+...-+
T Consensus         5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~-----------d~A~~~Lee~--gF~Vr~~dV   71 (142)
T COG4747           5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRP-----------DEAHSVLEEA--GFTVRETDV   71 (142)
T ss_pred             EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCCh-----------HHHHHHHHHC--CcEEEeeeE
Confidence            678899999999999999999999999999998877665555555322           1222222221  0 0233568


Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCC-eeeeEEEE
Q 017375          263 LELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSG-KAVNTFYV  306 (372)
Q Consensus       263 lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~-~~~d~F~v  306 (372)
                      +-|...|+||-|+.|..+|.+.++|+..+-.-+... .+.=.|-+
T Consensus        72 laVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~  116 (142)
T COG4747          72 LAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVRV  116 (142)
T ss_pred             EEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEEh
Confidence            888999999999999999999999999988876543 44444443

>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

Probab=98.15  E-value=4.6e-06  Score=63.16  Aligned_cols=65  Identities=12%  Similarity=0.187  Sum_probs=45.6

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 017375          262 KLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQ  328 (372)
Q Consensus       262 ~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~  328 (372)
                      +|++.|+||||++++||++|+++|+||...+..+..  ....|++.-.-..|-.+-..+.|+++|..
T Consensus         1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~--~~~~f~~~~~~~~~~~~~~~~~l~~~l~~   65 (74)
T cd04875           1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDP--DSGRFFMRVEFELEGFDLSREALEAAFAP   65 (74)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecC--CCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Confidence            478999999999999999999999999999988742  22358775332333210124556655544

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=98.04  E-value=1.3e-05  Score=61.56  Aligned_cols=66  Identities=18%  Similarity=0.366  Sum_probs=47.0

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCe--eeeEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 017375          262 KLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGK--AVNTFYVGGASGYPVDAKIIDSIRQSIGQ  328 (372)
Q Consensus       262 ~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~--~~d~F~v~~~~g~~~~~~~~~~l~~~l~~  328 (372)
                      .+.+.++|+||++++||++|+++|+||...+..|.+..  ....|+++-.-..|-+ ....+|++.|..
T Consensus         1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~-~~~~~l~~~l~~   68 (81)
T cd04869           1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAG-TDLDALREELEE   68 (81)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCCC-CCHHHHHHHHHH
Confidence            37899999999999999999999999999999998742  4456665433222311 124555555544

This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in

>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein

Probab=98.03  E-value=1.5e-05  Score=62.61  Aligned_cols=46  Identities=17%  Similarity=0.263  Sum_probs=39.0

Q ss_pred             eEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEE
Q 017375          261 LKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYV  306 (372)
Q Consensus       261 t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v  306 (372)
                      .++.+.|+||||++++||++|+++|+||...+-.+.+++..=.+.+
T Consensus         2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v   47 (88)
T cd04872           2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIV   47 (88)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEE
Confidence            5789999999999999999999999999999998876554334444

This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein

Probab=98.02  E-value=1.9e-05  Score=62.01  Aligned_cols=64  Identities=23%  Similarity=0.340  Sum_probs=51.2

Q ss_pred             EEEEEEecCccchHHHHHHHHHhcCceEEEEEEEecCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017375           49 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCN  118 (372)
Q Consensus        49 t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~  118 (372)
                      ..|++.|+|+||++++++++|+++|+||.+.+..+.++.+.-.+.|.-+  +... +   .+.|++.|..
T Consensus         2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~--~~~~-~---~~~L~~~l~~   65 (88)
T cd04872           2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDIS--ESNL-D---FAELQEELEE   65 (88)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeC--CCCC-C---HHHHHHHHHH
Confidence            4789999999999999999999999999999999988887777777642  2111 1   3677777765

This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

Probab=97.96  E-value=5.6e-05  Score=57.15  Aligned_cols=35  Identities=17%  Similarity=0.264  Sum_probs=32.8

Q ss_pred             EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEee
Q 017375          184 VVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE  218 (372)
Q Consensus       184 ~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~  218 (372)
                      +|+|.|+||||++++|+++|+++|+||.+.+..+.
T Consensus         1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~   35 (74)
T cd04875           1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVD   35 (74)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeec
Confidence            47899999999999999999999999999999874

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=97.95  E-value=5.3e-05  Score=58.08  Aligned_cols=62  Identities=27%  Similarity=0.402  Sum_probs=47.0

Q ss_pred             EEEEEecCccchHHHHHHHHHhcCceEEEEEEEecC------CceEEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017375           50 AIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHN------TRAAALMQVTDEETGGAISDPERLSVIKELLCN  118 (372)
Q Consensus        50 ~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~------~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~  118 (372)
                      .|+|.++|+||++++|+++|+++|+||.+.+..+.+      +.+.-.+.|.-| .+  . +   .++|++.|..
T Consensus         1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p-~~--~-~---~~~l~~~l~~   68 (81)
T cd04869           1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALP-AG--T-D---LDALREELEE   68 (81)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecC-CC--C-C---HHHHHHHHHH
Confidence            378999999999999999999999999999999965      444445555432 11  2 2   3677777765

This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in

>PRK00194 hypothetical protein; Validated

Probab=97.95  E-value=3.3e-05  Score=60.72  Aligned_cols=65  Identities=25%  Similarity=0.336  Sum_probs=50.4

Q ss_pred             eEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEecCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017375           48 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCN  118 (372)
Q Consensus        48 ~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~  118 (372)
                      ...|+|.++||||++++++++|+++|+||.+.+-.+.++.+.-.+.+.-+  +.+. +   .+.|++.|.+
T Consensus         3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~--~~~~-~---~~~l~~~l~~   67 (90)
T PRK00194          3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDIS--ESKK-D---FAELKEELEE   67 (90)
T ss_pred             eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEec--CCCC-C---HHHHHHHHHH
Confidence            67899999999999999999999999999999988887776666665432  2122 2   2566666664

>PRK00194 hypothetical protein; Validated

Probab=97.91  E-value=3.3e-05  Score=60.71  Aligned_cols=43  Identities=16%  Similarity=0.353  Sum_probs=38.1

Q ss_pred             ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEE
Q 017375          260 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYV  306 (372)
Q Consensus       260 ~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v  306 (372)
                      .+++++.++||||++++|+++|+++|+||...+-.+.++    .||+
T Consensus         3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~----~~~~   45 (90)
T PRK00194          3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDG----YFTM   45 (90)
T ss_pred             eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCC----eeEE
Confidence            478999999999999999999999999999999888654    5555

>COG4747 ACT domain-containing protein [General function prediction only]

Probab=97.71  E-value=0.0055  Score=50.14  Aligned_cols=112  Identities=16%  Similarity=0.101  Sum_probs=80.3

Q ss_pred             EEEEEecCccchHHHHHHHHHhcCceEEEEEEEecCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCcc
Q 017375           50 AIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKGSNKSGLA  129 (372)
Q Consensus        50 ~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~L~~~~~~~~~  129 (372)
                      .|.|..-++||=|+..+.+|.++|+||..-.|.-.++.-+--+.|..|       +  .   -.+.|++    ..     
T Consensus         5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~-------d--~---A~~~Lee----~g-----   63 (142)
T COG4747           5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRP-------D--E---AHSVLEE----AG-----   63 (142)
T ss_pred             EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCCh-------H--H---HHHHHHH----CC-----
Confidence            578899999999999999999999999876666556555555555432       1  1   1122221    10     


Q ss_pred             cccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHhCCce
Q 017375          130 KTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYV  209 (372)
Q Consensus       130 ~~~l~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~v~V~~~DrpGLL~~i~~~L~~~gln  209 (372)
                                                          |    .|.+       .-++-|..+|+||=|.+|+.+|.++++|
T Consensus        64 ------------------------------------F----~Vr~-------~dVlaVEmeD~PG~l~~I~~vl~d~diN   96 (142)
T COG4747          64 ------------------------------------F----TVRE-------TDVLAVEMEDVPGGLSRIAEVLGDADIN   96 (142)
T ss_pred             ------------------------------------c----EEEe-------eeEEEEEecCCCCcHHHHHHHHhhcCcC
Confidence                                                0    1111       1378888999999999999999999999


Q ss_pred             EEEEEEEeeC-CeEEEEEEEe
Q 017375          210 VFHANIDAEG-PEAYQEYFIR  229 (372)
Q Consensus       210 I~~A~I~T~g-~~~~d~F~V~  229 (372)
                      +.....++.. ..+.-.|.+.
T Consensus        97 ldYiYAFv~ek~KAlli~r~e  117 (142)
T COG4747          97 LDYIYAFVTEKQKALLIVRVE  117 (142)
T ss_pred             ceeeeeeeecCceEEEEEEhh
Confidence            9999998865 6666555553

>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A

Probab=97.70  E-value=0.00023  Score=54.57  Aligned_cols=63  Identities=27%  Similarity=0.400  Sum_probs=46.4

Q ss_pred             eEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEec--CCceEEEEEEecCCCCCCCCCHHHHHHHHHHHH
Q 017375           48 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH--NTRAAALMQVTDEETGGAISDPERLSVIKELLC  117 (372)
Q Consensus        48 ~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~--~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~  117 (372)
                      .+.+.|.+.||||+|++|+.++++.|+||.+..+.+.  ++.+.-.|.|.-       .+.+.+..|-..|+
T Consensus         6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V-------~d~~~L~~ii~~L~   70 (80)
T PF13291_consen    6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEV-------KDLEHLNQIIRKLR   70 (80)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEE-------SSHHHHHHHHHHHC
T ss_pred             EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEE-------CCHHHHHHHHHHHH
Confidence            3578999999999999999999999999999999994  567666776653       24445555544443

>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A

Probab=97.63  E-value=0.00059  Score=52.25  Aligned_cols=63  Identities=16%  Similarity=0.175  Sum_probs=47.4

Q ss_pred             eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHH
Q 017375          182 YSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE--GPEAYQEYFIRHIDGSPVKSDAERERVIQCLK  250 (372)
Q Consensus       182 ~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~--g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~  250 (372)
                      .+.+.|.+.||||+|++|+.++++.|+||.+.++.+.  ++.+.-.|.+.-.      +.+.++.+.+.|.
T Consensus         6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~------d~~~L~~ii~~L~   70 (80)
T PF13291_consen    6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVK------DLEHLNQIIRKLR   70 (80)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEES------SHHHHHHHHHHHC
T ss_pred             EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEEC------CHHHHHHHHHHHH
Confidence            4589999999999999999999999999999999995  5777777777532      3345666665553

>COG3830 ACT domain-containing protein [Signal transduction mechanisms]

Probab=97.59  E-value=0.00011  Score=57.19  Aligned_cols=67  Identities=15%  Similarity=0.257  Sum_probs=44.3

Q ss_pred             ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCCHHHHHHHHHHHHHhh
Q 017375          260 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQTI  330 (372)
Q Consensus       260 ~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~~~  330 (372)
                      ..+|+|.|.||||+.+.|+++|+++|+||....=+-..+.-.=.+.| +.   +........+|++|..+.
T Consensus         3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV-~~---~~~~~d~~~lr~~l~~~~   69 (90)
T COG3830           3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLV-DI---SKEVVDFAALRDELAAEG   69 (90)
T ss_pred             eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEE-cC---ChHhccHHHHHHHHHHHH
Confidence            46899999999999999999999999999987633333332223333 22   211224456666665443

>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.53  E-value=0.0021  Score=61.70  Aligned_cols=108  Identities=11%  Similarity=0.092  Sum_probs=64.7

Q ss_pred             eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEE--eeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhc----
Q 017375          182 YSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANID--AEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER----  255 (372)
Q Consensus       182 ~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~--T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~----  255 (372)
                      ..+|+|.|+||||+.+.|+++|+++|+||.+.+.+  +..+.+.-.+.+.+......    ..+.|+++|.+.-.+    
T Consensus         9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~~~~~~----~~~~l~~~l~~l~~~l~l~   84 (289)
T PRK13010          9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSAEAA----SVDTFRQEFQPVAEKFDMQ   84 (289)
T ss_pred             CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcCCCCCC----CHHHHHHHHHHHHHHhCCe
Confidence            46899999999999999999999999999999997  33344433333332111122    235566655544321    


Q ss_pred             ----cCCCceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEE
Q 017375          256 ----RVSEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEV  293 (372)
Q Consensus       256 ----r~~~~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i  293 (372)
                          ...+...|-|-.--+..-|.+|-.....-.++.+-.-+
T Consensus        85 ~~i~~~~~~~kiavl~Sg~g~nl~al~~~~~~~~l~~~i~~v  126 (289)
T PRK13010         85 WAIHPDGQRPKVVIMVSKFDHCLNDLLYRWRMGELDMDIVGI  126 (289)
T ss_pred             EEEecCCCCeEEEEEEeCCCccHHHHHHHHHCCCCCcEEEEE
Confidence                11223334444444445566777776666655444333

>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.52  E-value=0.0039  Score=59.78  Aligned_cols=104  Identities=18%  Similarity=0.160  Sum_probs=65.3

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe--eCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhc---
Q 017375          181 DYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDA--EGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER---  255 (372)
Q Consensus       181 ~~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T--~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~---  255 (372)
                      ...+|+|.|+||||+++.|+++|+++|+||.+.+..+  .++.+.-.+.+.- +..+.    ..+.|++.|...-+.   
T Consensus         5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~-~~~~~----~~~~L~~~L~~l~~~l~l   79 (286)
T PRK06027          5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEG-DGLIF----NLETLRADFAALAEEFEM   79 (286)
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEe-CCCCC----CHHHHHHHHHHHHHHhCC
Confidence            4679999999999999999999999999999999999  6676555555532 11121    245666666544321   


Q ss_pred             ----c-CCCceEEEEEeCCCcchHHHHHHHHHhCCceEE
Q 017375          256 ----R-VSEGLKLELCTTDRVGLLSNVTRIFRENSLTVT  289 (372)
Q Consensus       256 ----r-~~~~t~lev~~~DrpGlL~~It~~L~~~gi~I~  289 (372)
                          + .++...|-|-+--+---|..+-.....-.++.+
T Consensus        80 ~i~l~~~~~~~ri~vl~Sg~gsnl~al~~~~~~~~~~~~  118 (286)
T PRK06027         80 DWRLLDSAERKRVVILVSKEDHCLGDLLWRWRSGELPVE  118 (286)
T ss_pred             EEEEcccccCcEEEEEEcCCCCCHHHHHHHHHcCCCCcE
Confidence                1 122233333333334445666666655544433

>TIGR00655 PurU formyltetrahydrofolate deformylase

Probab=97.50  E-value=0.003  Score=60.34  Aligned_cols=105  Identities=10%  Similarity=0.148  Sum_probs=68.8

Q ss_pred             EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhcc-----
Q 017375          184 VVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEG--PEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERR-----  256 (372)
Q Consensus       184 ~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g--~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~r-----  256 (372)
                      +|+|.|+||||+.+.|+++|+++|+||.+.+.+...  +++.-.+.+.-+ +...    ..+.|++.|.+++..+     
T Consensus         2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~-~~~~----~~~~l~~~l~~~~~~~~~l~i   76 (280)
T TIGR00655         2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLE-GFRL----EESSLLAAFKSALAEKFEMTW   76 (280)
T ss_pred             EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeC-CCCC----CHHHHHHHHHHHHHHHhCCEE
Confidence            689999999999999999999999999999998853  666655555432 2122    2356666666622211     


Q ss_pred             ----CCCceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEE
Q 017375          257 ----VSEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEV  293 (372)
Q Consensus       257 ----~~~~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i  293 (372)
                          ..+...|-|-+--+---|.+|-.....-.++++-.-+
T Consensus        77 ~l~~~~~~~ki~vl~Sg~g~nl~~l~~~~~~g~l~~~i~~v  117 (280)
T TIGR00655        77 ELILADKLKRVAILVSKEDHCLGDLLWRWYSGELDAEIALV  117 (280)
T ss_pred             EEecCCCCcEEEEEEcCCChhHHHHHHHHHcCCCCcEEEEE
Confidence                1122334444444455678888887776665544433

This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.

>COG3830 ACT domain-containing protein [Signal transduction mechanisms]

Probab=97.49  E-value=0.00018  Score=56.00  Aligned_cols=67  Identities=15%  Similarity=0.058  Sum_probs=49.3

Q ss_pred             eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHH
Q 017375          182 YSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAI  253 (372)
Q Consensus       182 ~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L  253 (372)
                      ..+|+|.+.||||+.+.++++|+++|+||.+-...-..+++.-.+.|.-+.. ..    ....+++.|....
T Consensus         3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~~~-~~----d~~~lr~~l~~~~   69 (90)
T COG3830           3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDISKE-VV----DFAALRDELAAEG   69 (90)
T ss_pred             eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCChH-hc----cHHHHHHHHHHHH
Confidence            4689999999999999999999999999999776666777776676643211 11    2345666555544

>PRK13011 formyltetrahydrofolate deformylase; Reviewed

Probab=97.48  E-value=0.0003  Score=67.42  Aligned_cols=46  Identities=17%  Similarity=0.297  Sum_probs=39.4

Q ss_pred             ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEE
Q 017375          260 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVG  307 (372)
Q Consensus       260 ~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~  307 (372)
                      .+.++|.|+||||+++.||++|+++|+||..+.-.|..  ..+.|+++
T Consensus         7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~--~~~~F~m~   52 (286)
T PRK13011          7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDR--LSGRFFMR   52 (286)
T ss_pred             eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecC--CCCeEEEE
Confidence            57899999999999999999999999999999877543  55566664

>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains

Probab=97.46  E-value=0.0012  Score=49.44  Aligned_cols=60  Identities=15%  Similarity=0.252  Sum_probs=46.0

Q ss_pred             EEEEecCccchHHHHHHHHHhcCceEEEEEEEec-CCceEEEEEEecCCCCCCCCCHHHHHHHHHHHH
Q 017375           51 IELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH-NTRAAALMQVTDEETGGAISDPERLSVIKELLC  117 (372)
Q Consensus        51 i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~-~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~  117 (372)
                      +.|.+.||||+|++|+.++++.|.||.+....+. .+.+...|.+.-       .+.+.++.+...|+
T Consensus         2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev-------~~~~~l~~i~~~L~   62 (74)
T cd04887           2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDA-------PSEEHAETIVAAVR   62 (74)
T ss_pred             EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEc-------CCHHHHHHHHHHHh
Confidence            6789999999999999999999999998888774 466666666643       23355666666655

The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK13011 formyltetrahydrofolate deformylase; Reviewed

Probab=97.37  E-value=0.0064  Score=58.28  Aligned_cols=108  Identities=10%  Similarity=0.085  Sum_probs=69.6

Q ss_pred             eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhc----
Q 017375          182 YSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE--GPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER----  255 (372)
Q Consensus       182 ~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~--g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~----  255 (372)
                      ..+|+|.|+||||+.+.++++|+++|+||.+.+..+.  ++.+.-.+.+..+.+.      ..+.|+++|......    
T Consensus         7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~~------~~~~L~~~L~~l~~~l~l~   80 (286)
T PRK13011          7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEGL------DEDALRAGFAPIAARFGMQ   80 (286)
T ss_pred             eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCCC------CHHHHHHHHHHHHHHhCcE
Confidence            4689999999999999999999999999999999854  3555545555434331      135566665554321    


Q ss_pred             ---c-CCCceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEee
Q 017375          256 ---R-VSEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVAT  295 (372)
Q Consensus       256 ---r-~~~~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T  295 (372)
                         + ..+...|-|-+--+---|..+..+...-.++.+-+-+-|
T Consensus        81 i~i~~~~~~~ri~vl~Sg~g~nl~al~~~~~~~~~~~~i~~vis  124 (286)
T PRK13011         81 WELHDPAARPKVLIMVSKFDHCLNDLLYRWRIGELPMDIVGVVS  124 (286)
T ss_pred             EEEeecccCceEEEEEcCCcccHHHHHHHHHcCCCCcEEEEEEE
Confidence               1 112234444444455567777777777766554444433

>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains

Probab=97.35  E-value=0.0024  Score=47.85  Aligned_cols=60  Identities=8%  Similarity=0.183  Sum_probs=46.0

Q ss_pred             EEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEeeCCCCCCCCHHHHHHHHHHHH
Q 017375          185 VTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGSPVKSDAERERVIQCLK  250 (372)
Q Consensus       185 v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g-~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~  250 (372)
                      +.|.+.||||+|++|+.++++.|.||......+.. +.+...|.+.-.      +.+.++.+.+.|.
T Consensus         2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~------~~~~l~~i~~~L~   62 (74)
T cd04887           2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAP------SEEHAETIVAAVR   62 (74)
T ss_pred             EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcC------CHHHHHHHHHHHh
Confidence            67899999999999999999999999998887754 666666666422      2245666666654

The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.32  E-value=0.00094  Score=64.00  Aligned_cols=71  Identities=21%  Similarity=0.318  Sum_probs=52.9

Q ss_pred             CeEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEe--cCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHhhcCCC
Q 017375           47 DHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT--HNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKGSN  124 (372)
Q Consensus        47 ~~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T--~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~L~~~~  124 (372)
                      ....|+|.|+||||+.+.++++|+++|+||.+.+.++  .+|.+.-.+.+.-  +..+.    .++.|++.|.+ +..+.
T Consensus         5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~--~~~~~----~~~~L~~~L~~-l~~~l   77 (286)
T PRK06027          5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEG--DGLIF----NLETLRADFAA-LAEEF   77 (286)
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEe--CCCCC----CHHHHHHHHHH-HHHHh
Confidence            5678999999999999999999999999999999999  6775545555542  11112    25678887764 44433

>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.24  E-value=0.0013  Score=63.06  Aligned_cols=67  Identities=15%  Similarity=0.279  Sum_probs=47.0

Q ss_pred             CeEEEEEEecCccchHHHHHHHHHhcCceEEEEEEE--ecCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017375           47 DHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVW--THNTRAAALMQVTDEETGGAISDPERLSVIKELLCN  118 (372)
Q Consensus        47 ~~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~--T~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~  118 (372)
                      ....|+|.|+||||+.+.++++|+++|+||.+.+-+  +..+...-.+.+.+. ....+ +   .+.|++.|.+
T Consensus         8 ~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~-~~~~~-~---~~~l~~~l~~   76 (289)
T PRK13010          8 PSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQ-SAEAA-S---VDTFRQEFQP   76 (289)
T ss_pred             cCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcC-CCCCC-C---HHHHHHHHHH
Confidence            456899999999999999999999999999999998  444444433333321 11123 2   2567776665

>TIGR00655 PurU formyltetrahydrofolate deformylase

Probab=97.22  E-value=0.0014  Score=62.52  Aligned_cols=69  Identities=17%  Similarity=0.226  Sum_probs=50.9

Q ss_pred             EEEEEecCccchHHHHHHHHHhcCceEEEEEEEec--CCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHhhcCCC
Q 017375           50 AIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH--NTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKGSN  124 (372)
Q Consensus        50 ~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~--~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~L~~~~  124 (372)
                      .|+|.|+||||+.+.++++|+++|+||.+.+.++.  ++++.-.+.+.-+  +.++ +   .+.|++.|.+++..+.
T Consensus         2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~--~~~~-~---~~~l~~~l~~~~~~~~   72 (280)
T TIGR00655         2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLE--GFRL-E---ESSLLAAFKSALAEKF   72 (280)
T ss_pred             EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeC--CCCC-C---HHHHHHHHHHHHHHHh
Confidence            58999999999999999999999999999999984  4666666666532  2223 1   2577777765344433

This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.

>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme

Probab=97.21  E-value=0.0031  Score=48.35  Aligned_cols=66  Identities=15%  Similarity=0.314  Sum_probs=46.6

Q ss_pred             eEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCC-eeeeEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 017375          261 LKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSG-KAVNTFYVGGASGYPVDAKIIDSIRQSIGQ  328 (372)
Q Consensus       261 t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~-~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~  328 (372)
                      +.+.+..+|+||.|++|...|+++|+||.+......+. ...=+|||. .+|. .+.+.+..+-..|..
T Consensus         2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd-~~~~-~~~~~~~~~l~~l~~   68 (80)
T cd04905           2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFID-FEGH-IEDPNVAEALEELKR   68 (80)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEE-EECC-CCCHHHHHHHHHHHH
Confidence            46778889999999999999999999999998776644 345578874 4454 333334444444443

The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi

>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains

Probab=97.13  E-value=0.0043  Score=45.50  Aligned_cols=60  Identities=18%  Similarity=0.253  Sum_probs=41.4

Q ss_pred             EEEEecCccchHHHHHHHHHhcCceEEEEEEEec-----CCceEEEEEEecCCCCCCCCCHHHHHHHHHHHH
Q 017375           51 IELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH-----NTRAAALMQVTDEETGGAISDPERLSVIKELLC  117 (372)
Q Consensus        51 i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~-----~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~  117 (372)
                      +.|..+|+||+|++|+.+|+++|+||.+......     .+.+...|.|.-       .+.+.++.+.+.|.
T Consensus         1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~-------~~~~~l~~l~~~l~   65 (73)
T cd04886           1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLET-------RGAEHIEEIIAALR   65 (73)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEe-------CCHHHHHHHHHHHH
Confidence            3578899999999999999999999998776653     244444444432       13344555555554

This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.

>CHL00100 ilvH acetohydroxyacid synthase small subunit

Probab=97.11  E-value=0.0025  Score=56.47  Aligned_cols=66  Identities=15%  Similarity=0.350  Sum_probs=47.5

Q ss_pred             eEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCCHHHHHHHHHHHHHhh
Q 017375          261 LKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQTI  330 (372)
Q Consensus       261 t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~~~  330 (372)
                      ..+.+.+.|+||+|++||.+|+++|+||.+..+..........+.+.-+ |   ++..+++|+.+|.+-.
T Consensus         3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~-~---~~~~ieqL~kQL~KLi   68 (174)
T CHL00100          3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVP-G---DDRTIEQLTKQLYKLV   68 (174)
T ss_pred             EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEE-C---CHHHHHHHHHHHHHHh
Confidence            4689999999999999999999999999999997633333334444322 1   2334677777776643

>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein

Probab=97.07  E-value=0.0035  Score=47.27  Aligned_cols=37  Identities=19%  Similarity=0.205  Sum_probs=33.7

Q ss_pred             EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCe
Q 017375          184 VVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPE  221 (372)
Q Consensus       184 ~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~  221 (372)
                      .+.|.+.||+|+|++|+.++++.|+||.+..+.+. +.
T Consensus         2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~   38 (74)
T cd04877           2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GR   38 (74)
T ss_pred             EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-Ce
Confidence            47899999999999999999999999999999876 44

ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence

>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate

Probab=97.06  E-value=0.0022  Score=45.41  Aligned_cols=46  Identities=17%  Similarity=0.291  Sum_probs=39.8

Q ss_pred             EEEEecCccchHHHHHHHHHhcCceEEEEEEEecC-CceEEEEEEec
Q 017375           51 IELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHN-TRAAALMQVTD   96 (372)
Q Consensus        51 i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~-~~~~d~F~V~~   96 (372)
                      |.+..+|+||.+++++.+|.++|+||.+..++..+ +...-.|.+.+
T Consensus         1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~   47 (56)
T cd04889           1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD   47 (56)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence            46789999999999999999999999999988864 77777787754

Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A

>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH)

Probab=97.06  E-value=0.0058  Score=45.10  Aligned_cols=61  Identities=13%  Similarity=0.262  Sum_probs=43.9

Q ss_pred             eEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecC-C-eeeeEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 017375          261 LKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKS-G-KAVNTFYVGGASGYPVDAKIIDSIRQSIGQ  328 (372)
Q Consensus       261 t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g-~-~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~  328 (372)
                      +.+.+..+|+||.|++|++.|+++|++|......... + ...-.|.++..       +..+.+.+.|.+
T Consensus         2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~-------~~~~~~~~~L~~   64 (69)
T cd04909           2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQ-------EDRERAKEILKE   64 (69)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCH-------HHHHHHHHHHHH
Confidence            4678899999999999999999999999988776652 2 33445555421       244566665554

The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate

Probab=97.01  E-value=0.0025  Score=45.17  Aligned_cols=45  Identities=18%  Similarity=0.318  Sum_probs=38.1

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecC-CeeeeEEEEE
Q 017375          263 LELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKS-GKAVNTFYVG  307 (372)
Q Consensus       263 lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g-~~~~d~F~v~  307 (372)
                      +++...|+||.|.+|++.|.++|+||.++.+...+ +.+.-.|.+.
T Consensus         1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~   46 (56)
T cd04889           1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFS   46 (56)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEEC
Confidence            46789999999999999999999999999987765 6666666664

Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A

>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

Probab=97.01  E-value=0.0051  Score=44.98  Aligned_cols=62  Identities=15%  Similarity=0.305  Sum_probs=44.8

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeec-CCeeeeEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 017375          262 KLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATK-SGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQ  328 (372)
Q Consensus       262 ~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~-g~~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~  328 (372)
                      .+.+.+.|+||+|.+|+++|+++|++|......+. ++.....++..+.   + + ++++.+.++|..
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~-~-~~~~~l~~~l~~   64 (72)
T cd04878           2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEG---D-D-DVIEQIVKQLNK   64 (72)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEEC---C-H-HHHHHHHHHHhC
Confidence            47889999999999999999999999999998775 3333333333222   1 2 466777777664

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of

>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains

Probab=96.96  E-value=0.0036  Score=46.04  Aligned_cols=45  Identities=20%  Similarity=0.275  Sum_probs=37.9

Q ss_pred             eEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEE
Q 017375          261 LKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVG  307 (372)
Q Consensus       261 t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~  307 (372)
                      +.+.|..+|+||.|++|+..|+++|+||.+.-+...++.  -+|.+.
T Consensus         2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~   46 (66)
T cd04908           2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLI   46 (66)
T ss_pred             EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEE
Confidence            467889999999999999999999999999988776553  555653

Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.

>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains

Probab=96.94  E-value=0.0089  Score=43.78  Aligned_cols=60  Identities=15%  Similarity=0.203  Sum_probs=41.1

Q ss_pred             EEEEecCCccHHHHHHHHHHhCCceEEEEEEEee-----CCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHH
Q 017375          185 VTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE-----GPEAYQEYFIRHIDGSPVKSDAERERVIQCLK  250 (372)
Q Consensus       185 v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~-----g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~  250 (372)
                      +.|..+|+||+|++++.+|+++|+||.+......     .+...-.|.+.-.      +.+.++.+.+.|.
T Consensus         1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~------~~~~l~~l~~~l~   65 (73)
T cd04886           1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETR------GAEHIEEIIAALR   65 (73)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeC------CHHHHHHHHHHHH
Confidence            3578899999999999999999999998776543     2444444444321      2234556665554

This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.89  E-value=0.0073  Score=43.94  Aligned_cols=44  Identities=25%  Similarity=0.381  Sum_probs=37.3

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecC--CeeeeEEEE
Q 017375          263 LELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKS--GKAVNTFYV  306 (372)
Q Consensus       263 lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g--~~~~d~F~v  306 (372)
                      +.+.+.|+||+|.+|+++|+++|++|.+..+...+  +...-.|.+
T Consensus         2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v   47 (71)
T cd04879           2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV   47 (71)
T ss_pred             EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence            67899999999999999999999999999987764  445555555

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active

>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein

Probab=96.89  E-value=0.0054  Score=46.23  Aligned_cols=35  Identities=26%  Similarity=0.355  Sum_probs=32.8

Q ss_pred             EEEEEecCccchHHHHHHHHHhcCceEEEEEEEec
Q 017375           50 AIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH   84 (372)
Q Consensus        50 ~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~   84 (372)
                      .+.|.+.||+|+|++|+.+++..|.||.+..+.+.
T Consensus         2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~   36 (74)
T cd04877           2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK   36 (74)
T ss_pred             EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC
Confidence            57899999999999999999999999999999775

ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence

>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains

Probab=96.89  E-value=0.005  Score=45.31  Aligned_cols=44  Identities=14%  Similarity=0.320  Sum_probs=37.3

Q ss_pred             EEEEEEecCccchHHHHHHHHHhcCceEEEEEEEecCCceEEEEEE
Q 017375           49 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQV   94 (372)
Q Consensus        49 t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~~~~~d~F~V   94 (372)
                      ..+.|..+|+||.|++++.+|.++|+||.+..++..++.  .++.+
T Consensus         2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl   45 (66)
T cd04908           2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRL   45 (66)
T ss_pred             EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEE
Confidence            468899999999999999999999999999998876554  44444

Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.

>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains

Probab=96.87  E-value=0.0086  Score=44.62  Aligned_cols=64  Identities=17%  Similarity=0.295  Sum_probs=44.8

Q ss_pred             eEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCC-eeeeEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 017375          261 LKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSG-KAVNTFYVGGASGYPVDAKIIDSIRQSIGQ  328 (372)
Q Consensus       261 t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~-~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~  328 (372)
                      +.|.+.+.|+||+|.+|++.|+++|++|..+...+..+ ......+++.    ..+.++++++.+.|..
T Consensus         1 ~yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~----~~~~~~l~~~i~~L~~   65 (79)
T cd04881           1 YYLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTH----ETSEAALNAALAEIEA   65 (79)
T ss_pred             CEEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEc----cCCHHHHHHHHHHHHc
Confidence            35789999999999999999999999999998765432 2222223322    2244566666666664

The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=96.77  E-value=0.0022  Score=48.12  Aligned_cols=53  Identities=11%  Similarity=0.130  Sum_probs=41.2

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeec--CCeeeeE--EEEEcCCCCCCC
Q 017375          262 KLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATK--SGKAVNT--FYVGGASGYPVD  315 (372)
Q Consensus       262 ~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~--g~~~~d~--F~v~~~~g~~~~  315 (372)
                      .+|++|..||-++||||-+|+.+|+.|.+|+|.-.  +++...+  |.+.+. ++.++
T Consensus         2 PVElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~-~~~~~   58 (77)
T cd04898           2 PVELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEH-DRLKL   58 (77)
T ss_pred             cccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCC-Ccccc
Confidence            58999999999999999999999999999999744  5555444  444443 43454

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]

Probab=96.74  E-value=0.0079  Score=56.13  Aligned_cols=66  Identities=15%  Similarity=0.252  Sum_probs=47.4

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHH
Q 017375          181 DYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEG--PEAYQEYFIRHIDGSPVKSDAERERVIQCLKA  251 (372)
Q Consensus       181 ~~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g--~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~  251 (372)
                      ...++++.|+|+||+.+.|++.|+++|+||.++.-++..  +++.-.-... .++.+.    ..+.+++.+..
T Consensus         6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~-~~~~~~----~~~~l~~~f~~   73 (287)
T COG0788           6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFE-GEGGPL----DREALRAAFAP   73 (287)
T ss_pred             cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEe-cCCCcc----cHHHHHHHHHH
Confidence            457999999999999999999999999999999999643  4443222222 233332    23566666655

>PRK07431 aspartate kinase; Provisional

Probab=96.73  E-value=0.45  Score=50.29  Aligned_cols=195  Identities=12%  Similarity=0.194  Sum_probs=114.1

Q ss_pred             CCeEEEEEEec---CccchHHHHHHHHHhcCceEEEEEEEecCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHhhcC
Q 017375           46 MDHTAIELTGS---DRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKG  122 (372)
Q Consensus        46 ~~~t~i~v~~~---DrpGLl~~i~~~l~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~L~~  122 (372)
                      .+...|.|++.   +.+|+++++..+|.+.|++|....  + . ..--.|.|..          +..++.-+.|++.+..
T Consensus       346 ~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~--s-S-e~~Is~vv~~----------~d~~~av~~Lh~~f~~  411 (587)
T PRK07431        346 TNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS--T-S-EVKVSCVIDA----------EDGDKALRAVCEAFEL  411 (587)
T ss_pred             CCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE--c-C-CCEEEEEEcH----------HHHHHHHHHHHHHhcc
Confidence            46778888886   789999999999999999997544  2 2 2233444533          1224444556666643


Q ss_pred             CCCCCcccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCCEEEEEecCCCCeEEEEEE-ecCCccHHHHHHH
Q 017375          123 SNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTIT-SKDRPKLVFDTVC  201 (372)
Q Consensus       123 ~~~~~~~~~~l~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~v~V~-~~DrpGLL~~i~~  201 (372)
                      +..-    ..+.      +-+.        ..+          ...-+.|..    ..+...|++. .++.+|+++++.+
T Consensus       412 ~~~~----~~~~------~~~~--------~~~----------~~~v~gIa~----~~~~~~i~l~~~~~~~g~~a~if~  459 (587)
T PRK07431        412 EDSQ----IEIN------PTAS--------GQD----------EPEVRGVAL----DRNQAQLAIRNVPDRPGMAASIFG  459 (587)
T ss_pred             CCcc----cccC------cccc--------CCC----------CCcEEEEEc----cCCEEEEEECCCCCCccHHHHHHH
Confidence            3211    1110      0000        000          001122222    2345556554 6788999999999


Q ss_pred             HHHhCCceEEEEEEEe-eC--CeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhc-c---CCCceEEEEEeC---CCc
Q 017375          202 TLTDMQYVVFHANIDA-EG--PEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER-R---VSEGLKLELCTT---DRV  271 (372)
Q Consensus       202 ~L~~~glnI~~A~I~T-~g--~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~-r---~~~~t~lev~~~---Drp  271 (372)
                      .|+++|++|..-.... .+  +..--.|.+...      +...+..+.+.|...+.. .   ...-..|.+.|.   .+|
T Consensus       460 ~l~~~~i~id~i~~~~~~~~~~~~~isf~v~~~------~~~~~~~~l~~l~~~~~~~~i~~~~~va~VSvVG~gm~~~~  533 (587)
T PRK07431        460 ALAEANISVDMIVQSQRCRSDGTRDISFTVPKE------DREAAQKVLRELAKQLPGAEVEDGPAIAKVSIVGAGMPGTP  533 (587)
T ss_pred             HHHHcCCeEEEEEecCCCCCCCceeEEEEEcHH------HHHHHHHHHHHHHHhcCCceEEEeCCeEEEEEECCCccCCc
Confidence            9999999998764421 11  233334555321      111223333333322211 1   123577888886   789


Q ss_pred             chHHHHHHHHHhCCceEEEEE
Q 017375          272 GLLSNVTRIFRENSLTVTRAE  292 (372)
Q Consensus       272 GlL~~It~~L~~~gi~I~~a~  292 (372)
                      |++.++.++|++.||+|....
T Consensus       534 gv~~ri~~aL~~~~I~v~~i~  554 (587)
T PRK07431        534 GVAARMFRALADAGINIEMIA  554 (587)
T ss_pred             CHHHHHHHHHHHCCCcEEEee
Confidence            999999999999999997666

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a

Probab=96.69  E-value=0.014  Score=43.69  Aligned_cols=61  Identities=21%  Similarity=0.314  Sum_probs=44.6

Q ss_pred             EEEEEecCccchHHHHHHHHHhcCceEEEEEEEec-CCceEEEEEEecCCCCCCCCCHH-HHHHHHHHHH
Q 017375           50 AIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH-NTRAAALMQVTDEETGGAISDPE-RLSVIKELLC  117 (372)
Q Consensus        50 ~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~-~~~~~d~F~V~~~~~g~~i~~~~-~~~~l~~~L~  117 (372)
                      .+.|.+.|+||++++|+.+++++|.||......+. ++.+.-.|.+.-.       +.+ .+++|-+.|+
T Consensus         2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~-------~~~~~l~~l~~~L~   64 (76)
T cd04888           2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTS-------TMNGDIDELLEELR   64 (76)
T ss_pred             EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcC-------chHHHHHHHHHHHh
Confidence            57899999999999999999999999998876553 4555556666431       223 4555555554

a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]

Probab=96.68  E-value=0.0039  Score=58.09  Aligned_cols=94  Identities=15%  Similarity=0.267  Sum_probs=62.0

Q ss_pred             CceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcC---CCCCCCHHHHHHHHHHHHHhhhcccC
Q 017375          259 EGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGA---SGYPVDAKIIDSIRQSIGQTILKVKG  335 (372)
Q Consensus       259 ~~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~~~---~g~~~~~~~~~~l~~~l~~~~~~~~~  335 (372)
                      ..++|.++|+|+||+++.|+..|+++|.||..+.=.  .+.....|+.+-.   .+.+.   ..+.|++.+.... +-=+
T Consensus         6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf--~D~~~g~FFmR~~f~~~~~~~---~~~~l~~~f~~~a-~~f~   79 (287)
T COG0788           6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQF--DDPETGRFFMRVEFEGEGGPL---DREALRAAFAPLA-EEFG   79 (287)
T ss_pred             cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccc--cccccCeEEEEEEEecCCCcc---cHHHHHHHHHHHH-HhhC
Confidence            458999999999999999999999999999998765  5566778888643   34343   3456666665521 1001


Q ss_pred             CCCCCCCCC-------CCCCCccccccccc
Q 017375          336 NPEDLKSAS-------QDSPTRFLFGGLFK  358 (372)
Q Consensus       336 ~~~~~~~~~-------~~~~~~~~~~~~~~  358 (372)
                      .-|....+.       ....-.-||++|+|
T Consensus        80 m~~~~~~~~~~~ri~i~VSK~~HCL~DLL~  109 (287)
T COG0788          80 MDWRLHDAAQRKRIAILVSKEDHCLGDLLY  109 (287)
T ss_pred             ceeEEeccccCceEEEEEechHHHHHHHHH
Confidence            111111111       13444668999997

>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains

Probab=96.67  E-value=0.0089  Score=43.20  Aligned_cols=36  Identities=17%  Similarity=0.260  Sum_probs=31.3

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecC
Q 017375          262 KLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKS  297 (372)
Q Consensus       262 ~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g  297 (372)
                      ++.+..+|+||-|++++..|+++|+||.+.......
T Consensus         1 ~i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~   36 (65)
T cd04882           1 VLAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEK   36 (65)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccC
Confidence            367889999999999999999999999988765444

Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a

Probab=96.64  E-value=0.0075  Score=45.20  Aligned_cols=62  Identities=21%  Similarity=0.229  Sum_probs=44.7

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecC-CeeeeEEEEEcCCCCCCCHH-HHHHHHHHHHH
Q 017375          262 KLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKS-GKAVNTFYVGGASGYPVDAK-IIDSIRQSIGQ  328 (372)
Q Consensus       262 ~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g-~~~~d~F~v~~~~g~~~~~~-~~~~l~~~l~~  328 (372)
                      .+.+.+.||||+|++|++.|+++|++|......+.. +.+.=.|-+.-.   .  .+ +++.+.++|..
T Consensus         2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~---~--~~~~l~~l~~~L~~   65 (76)
T cd04888           2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTS---T--MNGDIDELLEELRE   65 (76)
T ss_pred             EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcC---c--hHHHHHHHHHHHhc
Confidence            578999999999999999999999999999875543 444445555321   1  12 56666666654

a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH)

Probab=96.64  E-value=0.017  Score=42.54  Aligned_cols=47  Identities=11%  Similarity=0.063  Sum_probs=36.6

Q ss_pred             EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeC-C-eEEEEEEEe
Q 017375          183 SVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEG-P-EAYQEYFIR  229 (372)
Q Consensus       183 t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g-~-~~~d~F~V~  229 (372)
                      ..+.+..+|+||.|+++++.|+++|+||......... + ...-.+.+.
T Consensus         2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~   50 (69)
T cd04909           2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFK   50 (69)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEEC
Confidence            3678899999999999999999999999988776652 2 333345553

The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06737 acetolactate synthase 1 regulatory subunit; Validated

Probab=96.61  E-value=0.016  Score=44.27  Aligned_cols=62  Identities=10%  Similarity=0.163  Sum_probs=44.4

Q ss_pred             EEEEEEecCccchHHHHHHHHHhcCceEEEEEEEec-CCceEE-EEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017375           49 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH-NTRAAA-LMQVTDEETGGAISDPERLSVIKELLCN  118 (372)
Q Consensus        49 t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~-~~~~~d-~F~V~~~~~g~~i~~~~~~~~l~~~L~~  118 (372)
                      ..+.+...|+||.|++++++|+..|.||.+-.+.-. +....- ++.+.    |    ++..++.|..+|.+
T Consensus         3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~----~----~~~~i~qi~kQL~K   66 (76)
T PRK06737          3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAV----C----TENEATLLVSQLKK   66 (76)
T ss_pred             EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEE----C----CHHHHHHHHHHHhC
Confidence            468999999999999999999999999998877643 333333 33332    2    23455677777664

>TIGR00119 acolac_sm acetolactate synthase, small subunit

Probab=96.61  E-value=0.014  Score=50.91  Aligned_cols=66  Identities=17%  Similarity=0.355  Sum_probs=49.2

Q ss_pred             eEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCCHHHHHHHHHHHHHhh
Q 017375          261 LKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQTI  330 (372)
Q Consensus       261 t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~~~  330 (372)
                      ..+.+...|+||.|++|+..|+++|+||.+..+...++...-.+.++- +|   ++..+++|..+|.+.+
T Consensus         2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V-~~---d~~~i~qi~kQl~Kli   67 (157)
T TIGR00119         2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVV-VG---DDKVLEQITKQLNKLV   67 (157)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEE-EC---CHHHHHHHHHHHhcCc
Confidence            468999999999999999999999999999988766533333333321 23   3557888888888644

acetohydroxyacid synthase is a synonym.

>PRK06737 acetolactate synthase 1 regulatory subunit; Validated

Probab=96.60  E-value=0.015  Score=44.34  Aligned_cols=64  Identities=8%  Similarity=0.163  Sum_probs=45.6

Q ss_pred             eEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 017375          261 LKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQ  328 (372)
Q Consensus       261 t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~  328 (372)
                      ..+.+...|+||+|.+|+..|+..|.||.+..+.-..+...-.+-++- .|   ++..+++|..+|.+
T Consensus         3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~-~~---~~~~i~qi~kQL~K   66 (76)
T PRK06737          3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTA-VC---TENEATLLVSQLKK   66 (76)
T ss_pred             EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEE-EC---CHHHHHHHHHHHhC
Confidence            468899999999999999999999999999998733333322232321 12   23466777777765

>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.60  E-value=0.012  Score=43.67  Aligned_cols=44  Identities=27%  Similarity=0.459  Sum_probs=34.5

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEeec--CCeeeeEEEE
Q 017375          263 LELCTTDRVGLLSNVTRIFRENSLTVTRAEVATK--SGKAVNTFYV  306 (372)
Q Consensus       263 lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~--g~~~~d~F~v  306 (372)
                      +-+...|+||.+++|++.|+++|++|.+......  ++.+.=+|.+
T Consensus         2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v   47 (73)
T cd04902           2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSV   47 (73)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEe
Confidence            4568999999999999999999999999887543  3445444444

The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden

>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit

Probab=96.59  E-value=0.016  Score=42.16  Aligned_cols=33  Identities=18%  Similarity=0.412  Sum_probs=30.5

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEee
Q 017375          263 LELCTTDRVGLLSNVTRIFRENSLTVTRAEVAT  295 (372)
Q Consensus       263 lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T  295 (372)
                      +.+.+.|+||.|.+|++.|+++|++|.++....
T Consensus         2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~   34 (71)
T cd04903           2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSR   34 (71)
T ss_pred             EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEe
Confidence            678899999999999999999999999998765

The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed

Probab=96.57  E-value=0.017  Score=45.86  Aligned_cols=67  Identities=19%  Similarity=0.269  Sum_probs=46.0

Q ss_pred             CCeEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEecCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHh
Q 017375           46 MDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNV  119 (372)
Q Consensus        46 ~~~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~  119 (372)
                      .+...|.+...|+||.|++|+++|+..|.||.+-.+.-.+..-.--+.+.- . +    + +.++.|..+|.+.
T Consensus         6 ~~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv-~-~----~-~~i~Qi~kQL~KL   72 (96)
T PRK08178          6 HDNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLV-N-D----D-QRLEQMISQIEKL   72 (96)
T ss_pred             CCCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEE-c-C----c-hHHHHHHHHHhCC
Confidence            345669999999999999999999999999998877654322222222221 1 1    2 4566777777653

>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional

Probab=96.57  E-value=0.014  Score=45.16  Aligned_cols=64  Identities=17%  Similarity=0.223  Sum_probs=46.0

Q ss_pred             EEEEEEecCccchHHHHHHHHHhcCceEEEEEEEecCC-ceE-EEEEEecCCCCCCCCCHHHHHHHHHHHHHh
Q 017375           49 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNT-RAA-ALMQVTDEETGGAISDPERLSVIKELLCNV  119 (372)
Q Consensus        49 t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~~-~~~-d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~  119 (372)
                      ..+.+...|+||.|++++++|+..|+||.+-.+..... .+. -++.+..   |    ++..++.|..+|.+.
T Consensus         3 ~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~---~----d~~~ieqI~kQL~Kl   68 (84)
T PRK13562          3 RILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDI---Q----DDTSLHILIKKLKQQ   68 (84)
T ss_pred             EEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeC---C----CHHHHHHHHHHHhCC
Confidence            36889999999999999999999999999988876433 332 3343321   2    344556777776653

>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains

Probab=96.53  E-value=0.021  Score=42.43  Aligned_cols=35  Identities=23%  Similarity=0.372  Sum_probs=31.5

Q ss_pred             EEEEEecCccchHHHHHHHHHhcCceEEEEEEEec
Q 017375           50 AIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH   84 (372)
Q Consensus        50 ~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~   84 (372)
                      -+.|.+.|+||++++++.+|+.+|+||.+....+.
T Consensus         2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~   36 (79)
T cd04881           2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEA   36 (79)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEccc
Confidence            36788999999999999999999999998887654

The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00119 acolac_sm acetolactate synthase, small subunit

Probab=96.51  E-value=0.02  Score=49.87  Aligned_cols=63  Identities=22%  Similarity=0.285  Sum_probs=47.0

Q ss_pred             EEEEEEecCccchHHHHHHHHHhcCceEEEEEEEecC--CceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHh
Q 017375           49 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHN--TRAAALMQVTDEETGGAISDPERLSVIKELLCNV  119 (372)
Q Consensus        49 t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~--~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~  119 (372)
                      ..+.|...|+||.|++|+++|+.+|+||.+-.+...+  +...-+|.|..        ++...+.|..+|.+.
T Consensus         2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~--------d~~~i~qi~kQl~Kl   66 (157)
T TIGR00119         2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG--------DDKVLEQITKQLNKL   66 (157)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC--------CHHHHHHHHHHHhcC
Confidence            3688999999999999999999999999998887653  33344555532        234566777777653

acetohydroxyacid synthase is a synonym.

>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

Probab=96.41  E-value=0.029  Score=40.83  Aligned_cols=46  Identities=17%  Similarity=0.278  Sum_probs=36.3

Q ss_pred             EEEEEecCccchHHHHHHHHHhcCceEEEEEEEec-C-CceEEEEEEe
Q 017375           50 AIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH-N-TRAAALMQVT   95 (372)
Q Consensus        50 ~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~-~-~~~~d~F~V~   95 (372)
                      .+.+.+.|+||++++|+.+|+++|++|.+....+. + +.+.-.|.+.
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~   49 (72)
T cd04878           2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVE   49 (72)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEE
Confidence            46788999999999999999999999999988774 3 3333344443

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of

>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed

Probab=96.40  E-value=0.026  Score=49.38  Aligned_cols=63  Identities=17%  Similarity=0.270  Sum_probs=46.9

Q ss_pred             EEEEEEecCccchHHHHHHHHHhcCceEEEEEEEecC--CceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHh
Q 017375           49 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHN--TRAAALMQVTDEETGGAISDPERLSVIKELLCNV  119 (372)
Q Consensus        49 t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~--~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~  119 (372)
                      ..+.|...|+||.|++|+++|+.+|+||.+-.+...+  +...-++.|..        ++..++.+..+|.+.
T Consensus         3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~--------~~~~i~qi~kQl~KL   67 (161)
T PRK11895          3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSG--------DEQVIEQITKQLNKL   67 (161)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEEC--------CHHHHHHHHHHHhcc
Confidence            4688999999999999999999999999988776643  33344555532        334567777777653

>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.39  E-value=0.011  Score=42.91  Aligned_cols=45  Identities=20%  Similarity=0.342  Sum_probs=38.4

Q ss_pred             EEEEecCccchHHHHHHHHHhcCceEEEEEEEecC--CceEEEEEEe
Q 017375           51 IELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHN--TRAAALMQVT   95 (372)
Q Consensus        51 i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~--~~~~d~F~V~   95 (372)
                      +.|.+.|++|++++++.+|+++|+||.+..+....  +...-.|.+.
T Consensus         2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~   48 (71)
T cd04879           2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVD   48 (71)
T ss_pred             EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcC
Confidence            67899999999999999999999999999988753  5656667663

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active

>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=96.39  E-value=0.032  Score=41.99  Aligned_cols=64  Identities=19%  Similarity=0.331  Sum_probs=45.0

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEeec-CCeeeeEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 017375          263 LELCTTDRVGLLSNVTRIFRENSLTVTRAEVATK-SGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQ  328 (372)
Q Consensus       263 lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~-g~~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~  328 (372)
                      +-+..+|+||-|++|...|+++|+||.+....-. +....=.|||. ..|.. .+...+.+-+.|..
T Consensus         2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id-~~~~~-~~~~~~~~l~~l~~   66 (75)
T cd04880           2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVD-FEGHI-DDPDVKEALEELKR   66 (75)
T ss_pred             EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEE-EECCC-CCHHHHHHHHHHHH
Confidence            3455689999999999999999999999976654 44566788884 44532 22344555555544

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech

>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional

Probab=96.39  E-value=0.018  Score=44.62  Aligned_cols=64  Identities=14%  Similarity=0.162  Sum_probs=45.9

Q ss_pred             EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHH
Q 017375          184 VVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEG--PEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAI  253 (372)
Q Consensus       184 ~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g--~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L  253 (372)
                      .+.+...|+||.|+++++.|+..|+||.+-.+....  +..--++.+.  .|    ++...+++...|...+
T Consensus         4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~--~~----d~~~ieqI~kQL~Kli   69 (84)
T PRK13562          4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVD--IQ----DDTSLHILIKKLKQQI   69 (84)
T ss_pred             EEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEe--CC----CHHHHHHHHHHHhCCc
Confidence            688999999999999999999999999998887654  3333333332  12    3346677777766443

>CHL00100 ilvH acetohydroxyacid synthase small subunit

Probab=96.38  E-value=0.027  Score=49.97  Aligned_cols=64  Identities=17%  Similarity=0.291  Sum_probs=46.7

Q ss_pred             EEEEEEecCccchHHHHHHHHHhcCceEEEEEEEec--CCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHhh
Q 017375           49 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH--NTRAAALMQVTDEETGGAISDPERLSVIKELLCNVL  120 (372)
Q Consensus        49 t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~--~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~L  120 (372)
                      ..+.|.+.|+||++++++++|+..|+||.+-.+...  .|..--++.|.    +    ++...+.|+++|.+..
T Consensus         3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~----~----~~~~ieqL~kQL~KLi   68 (174)
T CHL00100          3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVP----G----DDRTIEQLTKQLYKLV   68 (174)
T ss_pred             EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEE----C----CHHHHHHHHHHHHHHh
Confidence            478999999999999999999999999999888763  33333344342    2    1223577777777643

>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed

Probab=96.34  E-value=0.023  Score=45.22  Aligned_cols=67  Identities=13%  Similarity=0.215  Sum_probs=50.8

Q ss_pred             CceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCCHHHHHHHHHHHHHhh
Q 017375          259 EGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQTI  330 (372)
Q Consensus       259 ~~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~~~  330 (372)
                      ....|.+-..|+||+|.+|+..|+..|.||.++.+.-.+....-.+.+.-. +    ++.++++..+|.+.+
T Consensus         7 ~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~-~----~~~i~Qi~kQL~KLi   73 (96)
T PRK08178          7 DNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN-D----DQRLEQMISQIEKLE   73 (96)
T ss_pred             CCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc-C----chHHHHHHHHHhCCc
Confidence            357899999999999999999999999999999987555444444444322 2    347788888887644

>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a

Probab=96.31  E-value=0.032  Score=40.74  Aligned_cols=35  Identities=20%  Similarity=0.354  Sum_probs=31.9

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeec
Q 017375          262 KLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATK  296 (372)
Q Consensus       262 ~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~  296 (372)
                      .+.+.+.|+||.|++|++.|++++++|......+.
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~   36 (72)
T cd04874           2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIE   36 (72)
T ss_pred             eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEecc
Confidence            57889999999999999999999999998887665

a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08577 hypothetical protein; Provisional

Probab=96.29  E-value=0.018  Score=48.84  Aligned_cols=65  Identities=18%  Similarity=0.285  Sum_probs=46.4

Q ss_pred             ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecC--CeeeeEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 017375          260 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKS--GKAVNTFYVGGASGYPVDAKIIDSIRQSIGQ  328 (372)
Q Consensus       260 ~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g--~~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~  328 (372)
                      .+.|.+.+.|+||+|++|+++|++++++|.+....+..  +.+.-.|.+. ..+.   ..++..+.+.|..
T Consensus        56 ~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~ve-v~~~---~~~l~~l~~~L~~  122 (136)
T PRK08577         56 LVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVD-LSKS---DIDLEELEEELKK  122 (136)
T ss_pred             EEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEE-eCCc---hhhHHHHHHHHHc
Confidence            68999999999999999999999999999999887754  3233333332 1111   1245666666654

>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria

Probab=96.27  E-value=0.006  Score=44.81  Aligned_cols=44  Identities=11%  Similarity=0.225  Sum_probs=34.6

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEE
Q 017375          263 LELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYV  306 (372)
Q Consensus       263 lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v  306 (372)
                      +-+.+.|+||+|.+|+..|++.|+||......+.++.+.=.|.+
T Consensus         2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~   45 (69)
T cd04901           2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDI   45 (69)
T ss_pred             EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEc
Confidence            45689999999999999999999999888766555444444444

The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-

>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=96.26  E-value=0.029  Score=42.42  Aligned_cols=49  Identities=20%  Similarity=0.336  Sum_probs=39.3

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCC-eeeeEEEEEcCCC
Q 017375          262 KLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSG-KAVNTFYVGGASG  311 (372)
Q Consensus       262 ~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~-~~~d~F~v~~~~g  311 (372)
                      .|-+...|+||-|++|-..|+.+|||+.+.+-..... .-+=.||| |..|
T Consensus         2 sl~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffv-d~~~   51 (74)
T cd04904           2 SLIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFV-DCEV   51 (74)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEE-EEEc
Confidence            4556668999999999999999999999999876644 45567888 5556

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy

>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit

Probab=96.23  E-value=0.035  Score=40.31  Aligned_cols=44  Identities=16%  Similarity=0.292  Sum_probs=34.9

Q ss_pred             EEEEecCCccHHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEE
Q 017375          185 VTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE--GPEAYQEYFI  228 (372)
Q Consensus       185 v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~--g~~~~d~F~V  228 (372)
                      +.+.++|+||.+.+++..|+++|++|.+......  ++.+.-.+.+
T Consensus         2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v   47 (71)
T cd04903           2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEV   47 (71)
T ss_pred             EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEe
Confidence            5778999999999999999999999998887662  3444433444

The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed

Probab=96.22  E-value=0.032  Score=48.85  Aligned_cols=64  Identities=20%  Similarity=0.383  Sum_probs=47.7

Q ss_pred             eEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCe--eeeEEEEEcCCCCCCCHHHHHHHHHHHHHhh
Q 017375          261 LKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGK--AVNTFYVGGASGYPVDAKIIDSIRQSIGQTI  330 (372)
Q Consensus       261 t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~--~~d~F~v~~~~g~~~~~~~~~~l~~~l~~~~  330 (372)
                      ..+.|...|+||.|++|+..|+++|+||.+..+....+.  ..=+|.+.   |   ++..++++..+|.+.+
T Consensus         3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~---~---~~~~i~qi~kQl~KLi   68 (161)
T PRK11895          3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTS---G---DEQVIEQITKQLNKLI   68 (161)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEE---C---CHHHHHHHHHHHhccc
Confidence            468999999999999999999999999999987654433  33334332   2   3456788888877644

>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

Probab=96.21  E-value=0.032  Score=37.51  Aligned_cols=35  Identities=31%  Similarity=0.490  Sum_probs=31.7

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecC
Q 017375          263 LELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKS  297 (372)
Q Consensus       263 lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g  297 (372)
                      |.+.+.|+||++++|+.+|+++|++|..+......
T Consensus         1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~   35 (60)
T cd02116           1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG   35 (60)
T ss_pred             CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence            46789999999999999999999999999987654

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p

>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional

Probab=96.20  E-value=0.015  Score=44.34  Aligned_cols=61  Identities=16%  Similarity=0.250  Sum_probs=45.8

Q ss_pred             eEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeec--CCeeeeEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 017375          261 LKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATK--SGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQ  328 (372)
Q Consensus       261 t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~--g~~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~  328 (372)
                      +.+.+...++||+|.+|+..|+..|.||.+..+.-.  ++...=++-+ .      ++..+++|..+|.+
T Consensus         4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v-~------~~~~i~ql~kQL~K   66 (76)
T PRK11152          4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTV-A------SERPIDLLSSQLNK   66 (76)
T ss_pred             EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEE-C------CCchHHHHHHHHhc
Confidence            578999999999999999999999999999998753  3334444444 2      23356677776665

>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria

Probab=96.19  E-value=0.0064  Score=44.68  Aligned_cols=45  Identities=13%  Similarity=0.134  Sum_probs=36.6

Q ss_pred             EEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEe
Q 017375          185 VTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIR  229 (372)
Q Consensus       185 v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~  229 (372)
                      +.+.+.|+||+|++++.+|+++|+||......+.++.+.-.|.+.
T Consensus         2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~   46 (69)
T cd04901           2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDID   46 (69)
T ss_pred             EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcC
Confidence            567899999999999999999999998876665556666555553

The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-

>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria

Probab=96.14  E-value=0.032  Score=41.57  Aligned_cols=34  Identities=21%  Similarity=0.241  Sum_probs=30.3

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEeec
Q 017375          263 LELCTTDRVGLLSNVTRIFRENSLTVTRAEVATK  296 (372)
Q Consensus       263 lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~  296 (372)
                      +.+..+|+||-|++++..|+++|+||.+......
T Consensus         2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~   35 (72)
T cd04884           2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE   35 (72)
T ss_pred             EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence            6788999999999999999999999998875544

This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a

Probab=96.07  E-value=0.03  Score=40.90  Aligned_cols=46  Identities=20%  Similarity=0.469  Sum_probs=36.8

Q ss_pred             EEEEEecCccchHHHHHHHHHhcCceEEEEEEEec-CCceEEEEEEe
Q 017375           50 AIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH-NTRAAALMQVT   95 (372)
Q Consensus        50 ~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~-~~~~~d~F~V~   95 (372)
                      ++.+.++|+||.|++++..|+++++||.+....+. ++...-.|.+.
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~   48 (72)
T cd04874           2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMELE   48 (72)
T ss_pred             eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEEe
Confidence            57889999999999999999999999998887765 34444344443

a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB

Probab=96.04  E-value=0.048  Score=40.31  Aligned_cols=34  Identities=24%  Similarity=0.484  Sum_probs=31.1

Q ss_pred             eEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEe
Q 017375          261 LKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVA  294 (372)
Q Consensus       261 t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~  294 (372)
                      +.+.+..+|+||.|.+|++.|+++|++|.++...
T Consensus         2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~   35 (72)
T cd04883           2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVY   35 (72)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEe
Confidence            5788999999999999999999999999988654

This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains

Probab=96.03  E-value=0.062  Score=37.99  Aligned_cols=61  Identities=21%  Similarity=0.352  Sum_probs=42.8

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecC-CeeeeEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 017375          263 LELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKS-GKAVNTFYVGGASGYPVDAKIIDSIRQSIGQ  328 (372)
Q Consensus       263 lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g-~~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~  328 (372)
                      |.+.+.|+||.+.+|+..|.+++++|....+...+ +...-.|.+...     +..+++.+.+.|..
T Consensus         1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~   62 (71)
T cd04876           1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVR-----DLEHLARIMRKLRQ   62 (71)
T ss_pred             CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEEC-----CHHHHHHHHHHHhC
Confidence            46789999999999999999999999999988765 222223333211     23355666666553

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i

>PRK04435 hypothetical protein; Provisional

Probab=96.03  E-value=0.064  Score=46.27  Aligned_cols=55  Identities=20%  Similarity=0.201  Sum_probs=44.9

Q ss_pred             ccCCCCeEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEec-CCceEEEEEEec
Q 017375           42 VKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH-NTRAAALMQVTD   96 (372)
Q Consensus        42 ~~~~~~~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~-~~~~~d~F~V~~   96 (372)
                      ....+....+.+...|+||+|++|+.+++.+|+||..-..... +|.+.-.|.|..
T Consensus        63 ~~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVev  118 (147)
T PRK04435         63 EMVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDT  118 (147)
T ss_pred             ccCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEe
Confidence            3456778899999999999999999999999999998877654 565556676653

>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH)

Probab=95.97  E-value=0.054  Score=42.71  Aligned_cols=66  Identities=21%  Similarity=0.346  Sum_probs=48.2

Q ss_pred             ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCe-eeeEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 017375          260 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGK-AVNTFYVGGASGYPVDAKIIDSIRQSIGQ  328 (372)
Q Consensus       260 ~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~-~~d~F~v~~~~g~~~~~~~~~~l~~~l~~  328 (372)
                      .+.|-+...|+||-|+++-..|+++|||+.+.+-.-.... -+=.||| |..|. .+ +.++.+-+.|..
T Consensus        14 ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfV-Dieg~-~~-~~~~~~l~~L~~   80 (90)
T cd04931          14 VISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFI-NLDKK-SA-PALDPIIKSLRN   80 (90)
T ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEE-EEEcC-CC-HHHHHHHHHHHH
Confidence            3677777899999999999999999999999998766444 4557888 55675 23 344444444444

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme

Probab=95.91  E-value=0.089  Score=40.10  Aligned_cols=66  Identities=12%  Similarity=0.236  Sum_probs=44.1

Q ss_pred             EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHH
Q 017375          183 SVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGSPVKSDAERERVIQCLKA  251 (372)
Q Consensus       183 t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g-~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~  251 (372)
                      +.+.+..+|+||.|+++...|+++|+||.+-...... +...-.|+|.- ++. ... ...+.+...|..
T Consensus         2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~-~~~-~~~-~~~~~~l~~l~~   68 (80)
T cd04905           2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDF-EGH-IED-PNVAEALEELKR   68 (80)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEE-ECC-CCC-HHHHHHHHHHHH
Confidence            3566778999999999999999999999988766543 33444566743 343 223 244444444443

The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi

>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains

Probab=95.91  E-value=0.019  Score=41.43  Aligned_cols=44  Identities=18%  Similarity=0.328  Sum_probs=34.7

Q ss_pred             EEEEecCccchHHHHHHHHHhcCceEEEEEEEecC--CceEEEEEE
Q 017375           51 IELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHN--TRAAALMQV   94 (372)
Q Consensus        51 i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~--~~~~d~F~V   94 (372)
                      +.|..+|+||-|++++.+|+++|+||.+...+...  +...-.|.+
T Consensus         2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~v   47 (65)
T cd04882           2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRT   47 (65)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEe
Confidence            67889999999999999999999999988776543  443334444

Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=95.91  E-value=0.037  Score=40.87  Aligned_cols=45  Identities=22%  Similarity=0.420  Sum_probs=37.1

Q ss_pred             EEEEecCccchHHHHHHHHHhcCceEEEEEEEe--cCCceEEEEEEe
Q 017375           51 IELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT--HNTRAAALMQVT   95 (372)
Q Consensus        51 i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T--~~~~~~d~F~V~   95 (372)
                      +.+..+|+||.+++++..|+++|+||.+.....  .++...-+|.+.
T Consensus         2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~   48 (73)
T cd04902           2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVD   48 (73)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeC
Confidence            467899999999999999999999999887765  355666667664

The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden

>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional

Probab=95.88  E-value=0.06  Score=41.07  Aligned_cols=62  Identities=13%  Similarity=0.162  Sum_probs=46.2

Q ss_pred             EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHH
Q 017375          183 SVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE--GPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAA  252 (372)
Q Consensus       183 t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~--g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~  252 (372)
                      ..+.+...|+||.|++++++|...|+||.+-.+...  ++..--++.+.  +     + ...+.|.+.|...
T Consensus         4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~--~-----~-~~i~ql~kQL~KL   67 (76)
T PRK11152          4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA--S-----E-RPIDLLSSQLNKL   67 (76)
T ss_pred             EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC--C-----C-chHHHHHHHHhcC
Confidence            478999999999999999999999999999988763  34444445442  2     1 3566777766543

>PRK08577 hypothetical protein; Provisional

Probab=95.88  E-value=0.08  Score=44.92  Aligned_cols=76  Identities=22%  Similarity=0.306  Sum_probs=51.6

Q ss_pred             HHHHHHHhhCCCC--ccc----CC-Cc-eecc--cCCCCeEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEec--CC
Q 017375           19 ILDYIRKCLGPEA--CFA----SS-MR-SVGV--KQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH--NT   86 (372)
Q Consensus        19 ~~~~i~~~l~~~~--~~~----~~-~~-~~~~--~~~~~~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~--~~   86 (372)
                      +...|++.|.=..  ...    .. .+ .+.+  ......+.+.|.+.|+||+|++|+.+|+++|+||.+....+.  ++
T Consensus        17 ip~~~r~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~   96 (136)
T PRK08577         17 IPLEIREALGIREGMYVLLIADTDKKEIHLEPIALPGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGE   96 (136)
T ss_pred             ecHHHHHHcCcCCCCEEEEEEECCCCEEEEEEcCCCCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCC
Confidence            5567888777222  111    11 12 3333  234568899999999999999999999999999998887774  33


Q ss_pred             ceEEEEEE
Q 017375           87 RAAALMQV   94 (372)
Q Consensus        87 ~~~d~F~V   94 (372)
                      .+...|.+
T Consensus        97 ~~~i~l~v  104 (136)
T PRK08577         97 LAECVIIV  104 (136)
T ss_pred             EEEEEEEE
Confidence            33344444

>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains

Probab=95.80  E-value=0.085  Score=37.24  Aligned_cols=45  Identities=29%  Similarity=0.508  Sum_probs=35.8

Q ss_pred             EEEEecCccchHHHHHHHHHhcCceEEEEEEEecC-CceEEEEEEe
Q 017375           51 IELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHN-TRAAALMQVT   95 (372)
Q Consensus        51 i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~-~~~~d~F~V~   95 (372)
                      +.|.++|+||.++.++..|.+++++|.+..+...+ +...-.|.+.
T Consensus         1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~   46 (71)
T cd04876           1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLE   46 (71)
T ss_pred             CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEE
Confidence            46789999999999999999999999999887755 4333444444

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i

>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria

Probab=95.78  E-value=0.064  Score=39.95  Aligned_cols=34  Identities=21%  Similarity=0.301  Sum_probs=30.3

Q ss_pred             EEEEecCccchHHHHHHHHHhcCceEEEEEEEec
Q 017375           51 IELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH   84 (372)
Q Consensus        51 i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~   84 (372)
                      +.+..+|+||-|++++..|+++|.||.+......
T Consensus         2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~   35 (72)
T cd04884           2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE   35 (72)
T ss_pred             EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence            6788999999999999999999999998865553

This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK07431 aspartate kinase; Provisional

Probab=95.70  E-value=1.9  Score=45.60  Aligned_cols=169  Identities=15%  Similarity=0.188  Sum_probs=104.5

Q ss_pred             ecCccchHHHHHHHHHhcCceEEEEEEEec-CCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCcccccc
Q 017375           55 GSDRPGLLSEVSAVLTHLKCNVVSAEVWTH-NTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKGSNKSGLAKTEV  133 (372)
Q Consensus        55 ~~DrpGLl~~i~~~l~~~glnI~~A~I~T~-~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~L~~~~~~~~~~~~l  133 (372)
                      ..+.+|++++|...|.++|+||.--..... .+...-.|.|...          ...+..+.|.+ +..+..        
T Consensus       278 ~~~~~g~~a~if~~l~~~~I~v~~i~qs~~~~~~~~isf~i~~~----------d~~~~~~~l~~-l~~~~~--------  338 (587)
T PRK07431        278 VPDRPGIAAQLFEELAAQGVNVDLIIQSIHEGNSNDIAFTVAEN----------ELKKAEAVAEA-IAPALG--------  338 (587)
T ss_pred             CCCcccHHHHHHHHHHHcCCcEEEEEeccCCCCCccEEEEEeHH----------HHHHHHHHHHH-HHHHcC--------
Confidence            468899999999999999999986543332 3333446777431          11222222322 111110        


Q ss_pred             cccccchhhhhhhhhhccccccccCCCCCCCCCCCCCEEEEEecCCCCeEEEEEEec---CCccHHHHHHHHHHhCCceE
Q 017375          134 SQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSK---DRPKLVFDTVCTLTDMQYVV  210 (372)
Q Consensus       134 ~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~v~V~~~---DrpGLL~~i~~~L~~~glnI  210 (372)
                                                         ...+.+.    .+...|.|.+.   +.||+++++..+|++.|++|
T Consensus       339 -----------------------------------~~~i~~~----~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i  379 (587)
T PRK07431        339 -----------------------------------GAEVLVE----TNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINI  379 (587)
T ss_pred             -----------------------------------CCcEEEe----CCeEEEEEECCCcccCccHHHHHHHHHHHCCCcE
Confidence                                               0112222    24567888875   79999999999999999999


Q ss_pred             EEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhc----c--------CC-----------CceEEEEE-
Q 017375          211 FHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER----R--------VS-----------EGLKLELC-  266 (372)
Q Consensus       211 ~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~----r--------~~-----------~~t~lev~-  266 (372)
                      ....  +..  ..-.|.|..         ...++..+.|...+..    .        .+           ....|+|. 
T Consensus       380 ~~i~--sSe--~~Is~vv~~---------~d~~~av~~Lh~~f~~~~~~~~~~~~~~~~~~~~v~gIa~~~~~~~i~l~~  446 (587)
T PRK07431        380 RMIS--TSE--VKVSCVIDA---------EDGDKALRAVCEAFELEDSQIEINPTASGQDEPEVRGVALDRNQAQLAIRN  446 (587)
T ss_pred             EEEE--cCC--CEEEEEEcH---------HHHHHHHHHHHHHhccCCcccccCccccCCCCCcEEEEEccCCEEEEEECC
Confidence            7644  222  222354532         2345555666666521    0        00           12345544 


Q ss_pred             eCCCcchHHHHHHHHHhCCceEEEEEEe
Q 017375          267 TTDRVGLLSNVTRIFRENSLTVTRAEVA  294 (372)
Q Consensus       267 ~~DrpGlL~~It~~L~~~gi~I~~a~i~  294 (372)
                      ..+.||++++|...|+++|++|......
T Consensus       447 ~~~~~g~~a~if~~l~~~~i~id~i~~~  474 (587)
T PRK07431        447 VPDRPGMAASIFGALAEANISVDMIVQS  474 (587)
T ss_pred             CCCCccHHHHHHHHHHHcCCeEEEEEec
Confidence            4688999999999999999999998543

>PRK04435 hypothetical protein; Provisional

Probab=95.48  E-value=0.14  Score=44.21  Aligned_cols=56  Identities=9%  Similarity=0.032  Sum_probs=44.6

Q ss_pred             EEecCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEe
Q 017375          174 VVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE-GPEAYQEYFIR  229 (372)
Q Consensus       174 i~~~~~~~~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~-g~~~~d~F~V~  229 (372)
                      +..........+.+...|+||+|++|+++|+++|+||........ ++.+.-.|.+.
T Consensus        61 ~~~~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVe  117 (147)
T PRK04435         61 FDEMVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISID  117 (147)
T ss_pred             ccccCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEE
Confidence            333456677899999999999999999999999999998876554 36666566664

>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class

Probab=95.36  E-value=0.72  Score=46.23  Aligned_cols=100  Identities=10%  Similarity=0.113  Sum_probs=67.5

Q ss_pred             CeEEEEEE---ecCCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhc-c
Q 017375          181 DYSVVTIT---SKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER-R  256 (372)
Q Consensus       181 ~~t~v~V~---~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~-r  256 (372)
                      +...|+|.   ..++||+++++..+|.++|++|.........  ..-.|.|..         +..+++.+.|.+.+.. .
T Consensus       259 ~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~s~--~~Is~~V~~---------~d~~~a~~~L~~~~~~~~  327 (401)
T TIGR00656       259 NVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTPSE--TSISLTVDE---------TDADEAVRALKDQSGAAG  327 (401)
T ss_pred             CEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCCCC--ceEEEEEeH---------HHHHHHHHHHHHHHHhcC
Confidence            46678887   5788999999999999999999754332111  222355531         1234444445444311 1


Q ss_pred             ------CCCceEEEEEeC---CCcchHHHHHHHHHhCCceEEEE
Q 017375          257 ------VSEGLKLELCTT---DRVGLLSNVTRIFRENSLTVTRA  291 (372)
Q Consensus       257 ------~~~~t~lev~~~---DrpGlL~~It~~L~~~gi~I~~a  291 (372)
                            ......|.|.+.   ++||+++++.++|++.|+||...
T Consensus       328 ~~~i~~~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~i  371 (401)
T TIGR00656       328 LDRVEVEEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILMI  371 (401)
T ss_pred             CceEEEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEE
Confidence                  123466777775   78999999999999999999853

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.

>PRK07334 threonine dehydratase; Provisional

Probab=95.19  E-value=0.12  Score=52.08  Aligned_cols=64  Identities=19%  Similarity=0.262  Sum_probs=48.0

Q ss_pred             eEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEec-----CCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017375           48 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH-----NTRAAALMQVTDEETGGAISDPERLSVIKELLCN  118 (372)
Q Consensus        48 ~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~-----~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~  118 (372)
                      .+.|.|.+.||||+|++|+.++++.++||.+....+.     ++.+.-.|.|.-       .+.++++.|...|++
T Consensus       326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V-------~d~~~L~~vi~~Lr~  394 (403)
T PRK07334        326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIET-------RDAAHLQEVIAALRA  394 (403)
T ss_pred             EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEe-------CCHHHHHHHHHHHHH
Confidence            3799999999999999999999999999999998764     344444444432       234566666666654

>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

Probab=95.15  E-value=0.088  Score=35.22  Aligned_cols=35  Identities=40%  Similarity=0.627  Sum_probs=31.6

Q ss_pred             EEEEecCccchHHHHHHHHHhcCceEEEEEEEecC
Q 017375           51 IELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHN   85 (372)
Q Consensus        51 i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~   85 (372)
                      |.+.++|++|++++++.+|..+|++|.........
T Consensus         1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~   35 (60)
T cd02116           1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG   35 (60)
T ss_pred             CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence            46889999999999999999999999999987753

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p

>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit

Probab=95.02  E-value=0.098  Score=47.79  Aligned_cols=60  Identities=22%  Similarity=0.306  Sum_probs=45.6

Q ss_pred             CCceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecC--CeeeeEEEEEcCCCCCCCHHHHHH
Q 017375          258 SEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKS--GKAVNTFYVGGASGYPVDAKIIDS  321 (372)
Q Consensus       258 ~~~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g--~~~~d~F~v~~~~g~~~~~~~~~~  321 (372)
                      +++..|-+.-.||||.+..|+..|.++||||..+++.-..  +.|.=+.-+    ..+++++.+++
T Consensus       146 ~~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~v----D~~v~~~vl~~  207 (208)
T TIGR00719       146 GEHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEI----DKNIDDHIKDA  207 (208)
T ss_pred             CCccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEe----CCCCCHHHHhh
Confidence            4678888899999999999999999999999999998654  444333333    34666655544

This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.

>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB

Probab=94.87  E-value=0.13  Score=37.92  Aligned_cols=47  Identities=28%  Similarity=0.502  Sum_probs=37.0

Q ss_pred             EEEEEEecCccchHHHHHHHHHhcCceEEEEEEEec--CCceEEEEEEe
Q 017375           49 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH--NTRAAALMQVT   95 (372)
Q Consensus        49 t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~--~~~~~d~F~V~   95 (372)
                      +.+.+..+|+||.|++++.+|+++|+||.+....-.  ++...-+|.+.
T Consensus         2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~   50 (72)
T cd04883           2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQ   50 (72)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEe
Confidence            578899999999999999999999999997765432  34444555554

This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B

Probab=94.82  E-value=0.11  Score=37.96  Aligned_cols=54  Identities=19%  Similarity=0.381  Sum_probs=36.8

Q ss_pred             CCcchHHHHHHHHHhCCceEEEEEEeecCC--eeeeEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 017375          269 DRVGLLSNVTRIFRENSLTVTRAEVATKSG--KAVNTFYVGGASGYPVDAKIIDSIRQSIGQ  328 (372)
Q Consensus       269 DrpGlL~~It~~L~~~gi~I~~a~i~T~g~--~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~  328 (372)
                      |+||+|.+|+..|...|+||.++.+.....  ...=++.+.   |.   +..++.|...|.+
T Consensus         1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~---~~---~~~i~~l~~Ql~K   56 (63)
T PF13710_consen    1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVS---GD---DREIEQLVKQLEK   56 (63)
T ss_dssp             SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEE---S----CCHHHHHHHHHHC
T ss_pred             CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEe---eC---chhHHHHHHHHhc
Confidence            789999999999999999999999987433  333344332   21   1245667776665

>PRK07334 threonine dehydratase; Provisional

Probab=94.82  E-value=0.18  Score=50.78  Aligned_cols=64  Identities=17%  Similarity=0.232  Sum_probs=48.3

Q ss_pred             eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEee-----CCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHH
Q 017375          182 YSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE-----GPEAYQEYFIRHIDGSPVKSDAERERVIQCLKA  251 (372)
Q Consensus       182 ~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~-----g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~  251 (372)
                      .+.|.|.+.||||+|.+|+.+|++.++||.+....+.     ++.+.-.|.|.-      .+.+.++.+.+.|..
T Consensus       326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V------~d~~~L~~vi~~Lr~  394 (403)
T PRK07334        326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIET------RDAAHLQEVIAALRA  394 (403)
T ss_pred             EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEe------CCHHHHHHHHHHHHH
Confidence            3689999999999999999999999999999998765     355544454431      122466777777664

>PRK06635 aspartate kinase; Reviewed

Probab=94.80  E-value=0.39  Score=48.16  Aligned_cols=103  Identities=13%  Similarity=0.190  Sum_probs=68.0

Q ss_pred             CeEEEEEE-ecCCccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHH---Hhc
Q 017375          181 DYSVVTIT-SKDRPKLVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGSPVKSDAERERVIQCLKAA---IER  255 (372)
Q Consensus       181 ~~t~v~V~-~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g-~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~---L~~  255 (372)
                      +...|+|. ..++||.++++..+|+++|+||......... +...-.|.|..         +..+...+.|.+.   +.-
T Consensus       261 ~v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~---------~~~~~a~~~L~~~~~~~~~  331 (404)
T PRK06635        261 DEAKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPR---------DDLEKALELLEEVKDEIGA  331 (404)
T ss_pred             CeEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcH---------HHHHHHHHHHHHHHHHcCc
Confidence            34445544 5678999999999999999999965443222 23444565632         1233334444432   110


Q ss_pred             c----CCCceEEEEEe---CCCcchHHHHHHHHHhCCceEEEEE
Q 017375          256 R----VSEGLKLELCT---TDRVGLLSNVTRIFRENSLTVTRAE  292 (372)
Q Consensus       256 r----~~~~t~lev~~---~DrpGlL~~It~~L~~~gi~I~~a~  292 (372)
                      +    ......+.|.+   .++||++++|.++|++.|++|....
T Consensus       332 ~~i~~~~~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~  375 (404)
T PRK06635        332 ESVTYDDDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMIS  375 (404)
T ss_pred             ceEEEcCCeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEE
Confidence            1    12346788876   5899999999999999999998863

>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes

Probab=94.80  E-value=0.16  Score=38.50  Aligned_cols=51  Identities=16%  Similarity=0.245  Sum_probs=40.3

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCC-eeeeEEEEEcCCCCC
Q 017375          262 KLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSG-KAVNTFYVGGASGYP  313 (372)
Q Consensus       262 ~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~-~~~d~F~v~~~~g~~  313 (372)
                      .|-+..+|+||-|+++-..|+.+|+|+.+.+...... ..+=.||| |..|..
T Consensus         2 sl~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~i-d~e~~~   53 (74)
T cd04929           2 SVIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFV-DCECDQ   53 (74)
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEE-EEEcCH
Confidence            3455668999999999999999999999999876644 45568888 555644

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B

Probab=94.68  E-value=0.13  Score=37.60  Aligned_cols=55  Identities=16%  Similarity=0.268  Sum_probs=37.6

Q ss_pred             CccchHHHHHHHHHhcCceEEEEEEEec--CCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHh
Q 017375           57 DRPGLLSEVSAVLTHLKCNVVSAEVWTH--NTRAAALMQVTDEETGGAISDPERLSVIKELLCNV  119 (372)
Q Consensus        57 DrpGLl~~i~~~l~~~glnI~~A~I~T~--~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~  119 (372)
                      |+||.|.+|+++|...|+||.+-.+...  ++..--++.|..  +.      ...+.|..+|.+.
T Consensus         1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~--~~------~~i~~l~~Ql~Kl   57 (63)
T PF13710_consen    1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSG--DD------REIEQLVKQLEKL   57 (63)
T ss_dssp             SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES---C------CHHHHHHHHHHCS
T ss_pred             CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEee--Cc------hhHHHHHHHHhcc
Confidence            7899999999999999999999999883  334334454442  11      2345676676653

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional

Probab=94.47  E-value=0.25  Score=53.31  Aligned_cols=73  Identities=21%  Similarity=0.135  Sum_probs=51.9

Q ss_pred             EEEEecCC-CCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEeeCCCCCCCCHHHHHHHHHH
Q 017375          172 VNVVNCYD-KDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE--GPEAYQEYFIRHIDGSPVKSDAERERVIQC  248 (372)
Q Consensus       172 V~i~~~~~-~~~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~--g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~  248 (372)
                      |.|+.... .-...|.|.+.||+|||++|+.++++.++||....+.+.  ++.+.-.|.|.-      .+-..+..+...
T Consensus       655 V~W~~~~~~~~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV------~~~~~L~~l~~~  728 (743)
T PRK10872        655 AVWGESYSSGYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEI------YNLQVLGRVLGK  728 (743)
T ss_pred             eEecCCCCceeEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEE------CCHHHHHHHHHH
Confidence            44543212 234588999999999999999999999999999999875  366655565532      232466666666


Q ss_pred             HH
Q 017375          249 LK  250 (372)
Q Consensus       249 L~  250 (372)
                      |.
T Consensus       729 L~  730 (743)
T PRK10872        729 LN  730 (743)
T ss_pred             Hh
Confidence            55

>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH)

Probab=94.34  E-value=0.46  Score=37.43  Aligned_cols=70  Identities=13%  Similarity=0.218  Sum_probs=47.3

Q ss_pred             CCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHH
Q 017375          180 KDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAI  253 (372)
Q Consensus       180 ~~~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g-~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L  253 (372)
                      .+.+.+.+..+|+||-|+++-..|+.+|+|+.+-.-.-.. ..-.-.|||. .+|.  .+ ..++.+.+.|...|
T Consensus        12 ~~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVD-ieg~--~~-~~~~~~l~~L~~~~   82 (90)
T cd04931          12 NGVISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFIN-LDKK--SA-PALDPIIKSLRNDI   82 (90)
T ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEE-EEcC--CC-HHHHHHHHHHHHHh
Confidence            3456777777999999999999999999999876655433 2233457774 4564  23 25555555555544

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11899 prephenate dehydratase; Provisional

Probab=94.16  E-value=0.23  Score=47.42  Aligned_cols=56  Identities=20%  Similarity=0.232  Sum_probs=45.1

Q ss_pred             ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCC-eeeeEEEEEcCCCCCCCH
Q 017375          260 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSG-KAVNTFYVGGASGYPVDA  316 (372)
Q Consensus       260 ~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~-~~~d~F~v~~~~g~~~~~  316 (372)
                      .|.|-+..+|+||.|+++-..|+++|||+.+.+-.-.+. .-+=.||| |..|..-++
T Consensus       194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~i-d~eg~~~d~  250 (279)
T PRK11899        194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYA-DIEGHPEDR  250 (279)
T ss_pred             eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEE-EEECCCCCH
Confidence            477777778999999999999999999999999886644 45668888 667755444

>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=94.09  E-value=0.45  Score=35.58  Aligned_cols=64  Identities=11%  Similarity=0.200  Sum_probs=41.2

Q ss_pred             EEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHH
Q 017375          185 VTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGSPVKSDAERERVIQCLKA  251 (372)
Q Consensus       185 v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g-~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~  251 (372)
                      +.+..+|+||-|+++..+|+++|+||.+-.-.... ....-.|+|. .+|.. .+ ...+.+.+.|..
T Consensus         2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id-~~~~~-~~-~~~~~~l~~l~~   66 (75)
T cd04880           2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVD-FEGHI-DD-PDVKEALEELKR   66 (75)
T ss_pred             EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEE-EECCC-CC-HHHHHHHHHHHH
Confidence            34556899999999999999999999987554432 2333446664 34432 12 245555555543

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech

>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=94.08  E-value=0.049  Score=42.28  Aligned_cols=61  Identities=25%  Similarity=0.398  Sum_probs=42.3

Q ss_pred             EEEEEeCC-CcchHHHHHHHHHhCCceEEEEEEee-----cC----CeeeeEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 017375          262 KLELCTTD-RVGLLSNVTRIFRENSLTVTRAEVAT-----KS----GKAVNTFYVGGASGYPVDAKIIDSIRQSIGQ  328 (372)
Q Consensus       262 ~lev~~~D-rpGlL~~It~~L~~~gi~I~~a~i~T-----~g----~~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~  328 (372)
                      +++|-|.| ++|++++||++|+++|+||...+--+     .+    ....-.|.|+   |.+.+   .+.||.+|..
T Consensus         1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~---~~~~~---~~~lr~~L~~   71 (84)
T cd04871           1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVR---GQPAD---LEALRAALLE   71 (84)
T ss_pred             CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEe---CCCCC---HHHHHHHHHH
Confidence            37889999 99999999999999999997765431     12    2344467774   43433   3566666654

The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains

>PRK06635 aspartate kinase; Reviewed

Probab=94.03  E-value=3.2  Score=41.65  Aligned_cols=106  Identities=17%  Similarity=0.234  Sum_probs=65.1

Q ss_pred             EEEEE-ecCccchHHHHHHHHHhcCceEEEEEEEecC-CceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCC
Q 017375           50 AIELT-GSDRPGLLSEVSAVLTHLKCNVVSAEVWTHN-TRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKGSNKSG  127 (372)
Q Consensus        50 ~i~v~-~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~-~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~L~~~~~~~  127 (372)
                      .|+|. ..++||.++++..+|.+.|+||.--..+... +...-.|.|..          +..++..+.|.+ +...... 
T Consensus       264 ~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~----------~~~~~a~~~L~~-~~~~~~~-  331 (404)
T PRK06635        264 KVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPR----------DDLEKALELLEE-VKDEIGA-  331 (404)
T ss_pred             EEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcH----------HHHHHHHHHHHH-HHHHcCc-
Confidence            34443 4568999999999999999999954322222 23445565543          112233333333 1111100 


Q ss_pred             cccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCCEEEEEecCCCCeEEEEEEe---cCCccHHHHHHHHHH
Q 017375          128 LAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITS---KDRPKLVFDTVCTLT  204 (372)
Q Consensus       128 ~~~~~l~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~v~V~~---~DrpGLL~~i~~~L~  204 (372)
                                                                ..|.+    ..+...+.|.+   ++.||.++++.++|+
T Consensus       332 ------------------------------------------~~i~~----~~~ia~isvvG~~~~~~~g~~a~i~~~La  365 (404)
T PRK06635        332 ------------------------------------------ESVTY----DDDIAKVSVVGVGMRSHPGVAAKMFEALA  365 (404)
T ss_pred             ------------------------------------------ceEEE----cCCeEEEEEECCCCCCCchHHHHHHHHHH
Confidence                                                      11222    12456777765   689999999999999


Q ss_pred             hCCceEEEE
Q 017375          205 DMQYVVFHA  213 (372)
Q Consensus       205 ~~glnI~~A  213 (372)
                      +.|+||...
T Consensus       366 ~~~Ini~~i  374 (404)
T PRK06635        366 EEGINIQMI  374 (404)
T ss_pred             HCCCCEEEE
Confidence            999999874

>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=93.89  E-value=0.38  Score=35.41  Aligned_cols=61  Identities=10%  Similarity=0.200  Sum_probs=42.9

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 017375          263 LELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQ  328 (372)
Q Consensus       263 lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~  328 (372)
                      +.|.-+||||-|.++++.++. |.||...+=.-.+.....++..-...    +.++++++.++|.+
T Consensus         1 ~~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~----~~~~~~~i~~~L~~   61 (68)
T cd04885           1 FAVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVP----DREDLAELKERLEA   61 (68)
T ss_pred             CEEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeC----CHHHHHHHHHHHHH
Confidence            357789999999999999999 99999887654443334444443222    23577777777765

This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06291 aspartate kinase; Provisional

Probab=93.84  E-value=1.6  Score=44.72  Aligned_cols=113  Identities=12%  Similarity=0.217  Sum_probs=74.9

Q ss_pred             CCeEEEEEEec---CCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhc-
Q 017375          180 KDYSVVTITSK---DRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER-  255 (372)
Q Consensus       180 ~~~t~v~V~~~---DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~-  255 (372)
                      .+...|+|.+.   +.+|+++++..+|+++|++|......+..  .--.|.|..         +..+...+.|...+.. 
T Consensus       319 ~~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse--~sIsf~V~~---------~d~~~av~~L~~~~~~~  387 (465)
T PRK06291        319 KNVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSE--SNISLVVDE---------ADLEKALKALRREFGEG  387 (465)
T ss_pred             CCEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCC--ceEEEEEeH---------HHHHHHHHHHHHHHHHh
Confidence            35667888764   68999999999999999999875443322  222355532         1223334444444432 


Q ss_pred             ---c---CCCceEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeE-EEE
Q 017375          256 ---R---VSEGLKLELCTT---DRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNT-FYV  306 (372)
Q Consensus       256 ---r---~~~~t~lev~~~---DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~-F~v  306 (372)
                         .   ...-..|.|.|.   +++|++.++..+|++.|++|....   +|...... |.|
T Consensus       388 ~~~~i~~~~~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~is---qgsSe~~Is~vV  445 (465)
T PRK06291        388 LVRDVTFDKDVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMIS---QGSSEVNISFVV  445 (465)
T ss_pred             cCcceEEeCCEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEE---eccccCeEEEEE
Confidence               1   123577888876   789999999999999999998665   44444444 444

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional

Probab=93.78  E-value=0.29  Score=52.77  Aligned_cols=63  Identities=22%  Similarity=0.312  Sum_probs=47.9

Q ss_pred             eEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEec--CCceEEEEEEecCCCCCCCCCHHHHHHHHHHHH
Q 017375           48 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH--NTRAAALMQVTDEETGGAISDPERLSVIKELLC  117 (372)
Q Consensus        48 ~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~--~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~  117 (372)
                      ...|.|.+.||+|||++|+.+++..++||.+..+.+.  ++.+...|.|.-       .+.+.+.+|-..|+
T Consensus       666 ~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV-------~~~~~L~~l~~~L~  730 (743)
T PRK10872        666 SLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEI-------YNLQVLGRVLGKLN  730 (743)
T ss_pred             EEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEE-------CCHHHHHHHHHHHh
Confidence            3588899999999999999999999999999998874  455555565542       23455666655554

>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH)

Probab=93.66  E-value=0.4  Score=39.57  Aligned_cols=53  Identities=11%  Similarity=0.084  Sum_probs=42.9

Q ss_pred             ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCee-eeEEEEEcCCCCC
Q 017375          260 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKA-VNTFYVGGASGYP  313 (372)
Q Consensus       260 ~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~-~d~F~v~~~~g~~  313 (372)
                      .|.|-+..+|+||-|++|-..|+.+|||+.+.+.......- +=.||| |..|..
T Consensus        41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfI-dieg~~   94 (115)
T cd04930          41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLV-RCEVHR   94 (115)
T ss_pred             cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEE-EEEeCH
Confidence            47777788999999999999999999999999988775553 457777 555643

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional

Probab=93.38  E-value=0.56  Score=50.54  Aligned_cols=73  Identities=3%  Similarity=-0.007  Sum_probs=51.3

Q ss_pred             EEEEecCC-CCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEeeCCCCCCCCHHHHHHHHHHH
Q 017375          172 VNVVNCYD-KDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGSPVKSDAERERVIQCL  249 (372)
Q Consensus       172 V~i~~~~~-~~~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g-~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L  249 (372)
                      |.|+.... .-.+.|.|.+.||+|+|.+|+.+++..++||.+..+.+.+ +.+.-.|.|.-      .+-..+..|...|
T Consensus       615 v~W~~~~~~~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV------~~~~~L~~i~~~L  688 (702)
T PRK11092        615 VEWDKETEQEFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTA------RDRVHLANIMRKI  688 (702)
T ss_pred             eEECCCCCceeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEE------CCHHHHHHHHHHH
Confidence            45543322 2345889999999999999999999999999999987765 45554555532      1224566666665


Q ss_pred             H
Q 017375          250 K  250 (372)
Q Consensus       250 ~  250 (372)
                      .
T Consensus       689 r  689 (702)
T PRK11092        689 R  689 (702)
T ss_pred             h
Confidence            4

>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=93.21  E-value=0.62  Score=34.26  Aligned_cols=61  Identities=23%  Similarity=0.286  Sum_probs=38.8

Q ss_pred             EEEEecCccchHHHHHHHHHhcCceEEEEEEEecCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017375           51 IELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCN  118 (372)
Q Consensus        51 i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~  118 (372)
                      +.|.-+||||-|.+++.+++. |.||..-+-.-.+-....++..-.      ..+++..+.|.+.|.+
T Consensus         1 ~~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie------~~~~~~~~~i~~~L~~   61 (68)
T cd04885           1 FAVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQ------VPDREDLAELKERLEA   61 (68)
T ss_pred             CEEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEE------eCCHHHHHHHHHHHHH
Confidence            357889999999999999999 999997654433222223332222      1133455666666654

This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=93.20  E-value=0.22  Score=37.55  Aligned_cols=68  Identities=21%  Similarity=0.324  Sum_probs=46.7

Q ss_pred             EEEEecCccchHHHHHHHHHhcCceEEEEEEEec--CCceEEE--EEEecCCCCCCCCCHHHHHHHHHHHHHhh
Q 017375           51 IELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH--NTRAAAL--MQVTDEETGGAISDPERLSVIKELLCNVL  120 (372)
Q Consensus        51 i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~--~~~~~d~--F~V~~~~~g~~i~~~~~~~~l~~~L~~~L  120 (372)
                      |+++++-||-.|++++-+|..+|.-|.+|.|.-+  +++---+  |.+.+  .+..++.......+..++.+.|
T Consensus         3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e--~~~~~~~~~~r~~i~drv~~~l   74 (77)
T cd04898           3 VELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLE--HDRLKLGGRQRSKVVDRVTKTL   74 (77)
T ss_pred             ccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecC--CCccccchHHHHHHHHHHHHHH
Confidence            6789999999999999999999999999999763  4443333  34444  2333443333355666655544

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family

Probab=93.13  E-value=0.68  Score=49.82  Aligned_cols=73  Identities=14%  Similarity=0.120  Sum_probs=50.9

Q ss_pred             EEEEec-CCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEeeCCCCCCCCHHHHHHHHHHH
Q 017375          172 VNVVNC-YDKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGSPVKSDAERERVIQCL  249 (372)
Q Consensus       172 V~i~~~-~~~~~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g-~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L  249 (372)
                      |.|... ...-.+.|.|.+.||+|+|++|+.+++..++||.+.++.+.. +.+.-.|.|.-      .+-..+..+...|
T Consensus       599 v~W~~~~~~~f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV------~~~~~L~~ii~~L  672 (683)
T TIGR00691       599 VEWNASKPRRFIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEI------KNYKHLLKIMLKI  672 (683)
T ss_pred             EEecCCCCceeEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEE------CCHHHHHHHHHHH
Confidence            445433 122345889999999999999999999999999999998764 55544454431      2224566666665


Q ss_pred             H
Q 017375          250 K  250 (372)
Q Consensus       250 ~  250 (372)
                      .
T Consensus       673 ~  673 (683)
T TIGR00691       673 K  673 (683)
T ss_pred             h
Confidence            4

(p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.

>PRK08210 aspartate kinase I; Reviewed

Probab=93.11  E-value=1.8  Score=43.41  Aligned_cols=96  Identities=11%  Similarity=0.213  Sum_probs=65.2

Q ss_pred             CeEEEEEEecCC-ccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhcc---
Q 017375          181 DYSVVTITSKDR-PKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERR---  256 (372)
Q Consensus       181 ~~t~v~V~~~Dr-pGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~r---  256 (372)
                      +...|+|...+. ||.+++|..+|+++|+||.......  .  .-.|.+..         +..+++.+.|.+ +...   
T Consensus       270 ~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~--~--~is~~v~~---------~~~~~a~~~l~~-~~~~v~~  335 (403)
T PRK08210        270 NVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIFP--T--EVVFTVSD---------EDSEKAKEILEN-LGLKPSV  335 (403)
T ss_pred             CcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecC--c--eEEEEEcH---------HHHHHHHHHHHH-hCCcEEE
Confidence            456777776665 9999999999999999999864432  2  12355532         123333333333 1111   


Q ss_pred             CCCceEEEEEeC---CCcchHHHHHHHHHhCCceEEE
Q 017375          257 VSEGLKLELCTT---DRVGLLSNVTRIFRENSLTVTR  290 (372)
Q Consensus       257 ~~~~t~lev~~~---DrpGlL~~It~~L~~~gi~I~~  290 (372)
                      ...-..|.|.+.   ++||++.++.++|++.|++|..
T Consensus       336 ~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~  372 (403)
T PRK08210        336 RENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ  372 (403)
T ss_pred             eCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence            123567777775   7899999999999999999974

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional

Probab=92.92  E-value=0.47  Score=51.08  Aligned_cols=63  Identities=17%  Similarity=0.219  Sum_probs=47.2

Q ss_pred             eEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEecC-CceEEEEEEecCCCCCCCCCHHHHHHHHHHHH
Q 017375           48 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHN-TRAAALMQVTDEETGGAISDPERLSVIKELLC  117 (372)
Q Consensus        48 ~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~-~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~  117 (372)
                      ...|.|.+.||+|+|++|+.+++..++||.+....+.+ +.+...|.|.=       .+.+.+.+|-..|+
T Consensus       626 ~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV-------~~~~~L~~i~~~Lr  689 (702)
T PRK11092        626 IAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTA-------RDRVHLANIMRKIR  689 (702)
T ss_pred             EEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEE-------CCHHHHHHHHHHHh
Confidence            45888999999999999999999999999999987754 44444555532       23355666655554

>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]

Probab=92.79  E-value=0.47  Score=45.19  Aligned_cols=57  Identities=18%  Similarity=0.278  Sum_probs=46.6

Q ss_pred             CceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCe-eeeEEEEEcCCCCCCCH
Q 017375          259 EGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGK-AVNTFYVGGASGYPVDA  316 (372)
Q Consensus       259 ~~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~-~~d~F~v~~~~g~~~~~  316 (372)
                      ..|.|-+..+|+||-|+++-..|+.+|||+.+.+..-.+.. .+=.||| |..|..-++
T Consensus       193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~i-D~eg~~~~~  250 (279)
T COG0077         193 EKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFI-DIEGHIDDP  250 (279)
T ss_pred             ceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEE-EEecCcCcH
Confidence            46888888889999999999999999999999998866544 5557777 677766553

>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional

Probab=92.76  E-value=0.56  Score=46.98  Aligned_cols=56  Identities=20%  Similarity=0.261  Sum_probs=45.3

Q ss_pred             ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeec-CCeeeeEEEEEcCCCCCCCH
Q 017375          260 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATK-SGKAVNTFYVGGASGYPVDA  316 (372)
Q Consensus       260 ~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~-g~~~~d~F~v~~~~g~~~~~  316 (372)
                      .|.|-+..+|+||.|+++-..|+.+|||+.+.+-.-. +..-+=.||| |..|..-++
T Consensus       297 ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffi-d~eg~~~d~  353 (386)
T PRK10622        297 KTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYL-DVQANLRSA  353 (386)
T ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEE-EEeCCCCCH
Confidence            4667777889999999999999999999999998844 5556678888 666755444

>PRK09034 aspartate kinase; Reviewed

Probab=92.75  E-value=6.2  Score=40.40  Aligned_cols=107  Identities=10%  Similarity=0.171  Sum_probs=69.6

Q ss_pred             CeEEEEEEe---cCCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhc-c
Q 017375          181 DYSVVTITS---KDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER-R  256 (372)
Q Consensus       181 ~~t~v~V~~---~DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~-r  256 (372)
                      +.+.|++.+   .+++|+++++..+|+++|++|...   + .+...-.|.|.+.+   +.. ..+..+.+.|...+.. .
T Consensus       307 ~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i---~-ss~~sis~~v~~~~---~~~-a~~~~l~~el~~~~~~~~  378 (454)
T PRK09034        307 GFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHM---P-SGIDDLSIIIRERQ---LTP-KKEDEILAEIKQELNPDE  378 (454)
T ss_pred             CEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEE---c-CCCcEEEEEEeHHH---hhH-HHHHHHHHHHHHhhCCce
Confidence            456777774   678999999999999999999875   2 22233346665321   111 0113333333332211 0


Q ss_pred             ---CCCceEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEee
Q 017375          257 ---VSEGLKLELCTT---DRVGLLSNVTRIFRENSLTVTRAEVAT  295 (372)
Q Consensus       257 ---~~~~t~lev~~~---DrpGlL~~It~~L~~~gi~I~~a~i~T  295 (372)
                         ...-..|.+.|.   ++||+++++..+|++.||+|....-.+
T Consensus       379 I~~~~~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~  423 (454)
T PRK09034        379 LEIEHDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGS  423 (454)
T ss_pred             EEEeCCEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence               123577888654   789999999999999999999886433

>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class

Probab=92.72  E-value=12  Score=37.49  Aligned_cols=106  Identities=13%  Similarity=0.154  Sum_probs=66.0

Q ss_pred             CeEEEEEE---ecCccchHHHHHHHHHhcCceEEEEEEEecCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHhhcCC
Q 017375           47 DHTAIELT---GSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKGS  123 (372)
Q Consensus        47 ~~t~i~v~---~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~L~~~  123 (372)
                      +...|.|.   ..+++|.++++..+|.++|++|..-... ..+ ..-.|.|..          +..+++.+.|.+.+.. 
T Consensus       259 ~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~-~s~-~~Is~~V~~----------~d~~~a~~~L~~~~~~-  325 (401)
T TIGR00656       259 NVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQT-PSE-TSISLTVDE----------TDADEAVRALKDQSGA-  325 (401)
T ss_pred             CEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcC-CCC-ceEEEEEeH----------HHHHHHHHHHHHHHHh-
Confidence            45567777   5678999999999999999999733211 111 223455532          1122333334332211 


Q ss_pred             CCCCcccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCCEEEEEecCCCCeEEEEEEec---CCccHHHHHH
Q 017375          124 NKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSK---DRPKLVFDTV  200 (372)
Q Consensus       124 ~~~~~~~~~l~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~v~V~~~---DrpGLL~~i~  200 (372)
                      ...                                           ..+.+    ..+...|.|.+.   ++||+++++.
T Consensus       326 ~~~-------------------------------------------~~i~~----~~~~a~IsvVG~~~~~~~g~~a~i~  358 (401)
T TIGR00656       326 AGL-------------------------------------------DRVEV----EEGLAKVSIVGAGMVGAPGVASEIF  358 (401)
T ss_pred             cCC-------------------------------------------ceEEE----eCCeEEEEEECCCcccCccHHHHHH
Confidence            000                                           11222    235677778774   7999999999


Q ss_pred             HHHHhCCceEEE
Q 017375          201 CTLTDMQYVVFH  212 (372)
Q Consensus       201 ~~L~~~glnI~~  212 (372)
                      .+|++.|+||..
T Consensus       359 ~~L~~~gIni~~  370 (401)
T TIGR00656       359 SALEEKNINILM  370 (401)
T ss_pred             HHHHHCCCcEEE
Confidence            999999999984

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=92.44  E-value=7.4  Score=42.93  Aligned_cols=102  Identities=4%  Similarity=0.093  Sum_probs=70.1

Q ss_pred             CCeEEEEEEec---CCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHH---
Q 017375          180 KDYSVVTITSK---DRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAI---  253 (372)
Q Consensus       180 ~~~t~v~V~~~---DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L---  253 (372)
                      .+.+.|+|.+.   .+||+++++..+|+++|++|......+..  ..-.|.|...         ..+...+.|.+.+   
T Consensus       313 ~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqssSe--~sIsf~V~~~---------d~~~av~~L~~~f~~e  381 (819)
T PRK09436        313 NNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSSSE--YSISFCVPQS---------DAAKAKRALEEEFALE  381 (819)
T ss_pred             CCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCCCC--ceEEEEEeHH---------HHHHHHHHHHHHHHHH
Confidence            45678888765   68999999999999999999765444322  2224656431         2233333333332   


Q ss_pred             -hc-c------CCCceEEEEEeC---CCcchHHHHHHHHHhCCceEEEEE
Q 017375          254 -ER-R------VSEGLKLELCTT---DRVGLLSNVTRIFRENSLTVTRAE  292 (372)
Q Consensus       254 -~~-r------~~~~t~lev~~~---DrpGlL~~It~~L~~~gi~I~~a~  292 (372)
                       .. .      ......|.|.|.   ++||++.++..+|++.|++|....
T Consensus       382 l~~~~~~~i~~~~~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~Is  431 (819)
T PRK09436        382 LKEGLLEPLEVEENLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIA  431 (819)
T ss_pred             hccCCcceEEEeCCEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEE
Confidence             21 1      123577888876   789999999999999999998775

>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit

Probab=92.30  E-value=0.73  Score=42.05  Aligned_cols=50  Identities=12%  Similarity=0.114  Sum_probs=41.5

Q ss_pred             CCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEE
Q 017375          179 DKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE--GPEAYQEYFI  228 (372)
Q Consensus       179 ~~~~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~--g~~~~d~F~V  228 (372)
                      ......+.+.-.|+||.+..++.+|.++|+||...++...  ++.++-+..+
T Consensus       145 ~~~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~v  196 (208)
T TIGR00719       145 RGEHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEI  196 (208)
T ss_pred             cCCccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEe
Confidence            3445577788899999999999999999999999999875  4777766555

This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=92.21  E-value=0.31  Score=49.16  Aligned_cols=60  Identities=18%  Similarity=0.343  Sum_probs=47.4

Q ss_pred             ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCCHHHHHHHH
Q 017375          260 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIR  323 (372)
Q Consensus       260 ~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~~~~g~~~~~~~~~~l~  323 (372)
                      ...|-+.-.|+||.+..|+.+|+++|+||...+....|+.+.-+|-+   ++ +++++.+++|+
T Consensus       338 ~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~---D~-~~~~~~~~~i~  397 (409)
T PRK11790        338 GHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDV---DA-DYAEEALDALK  397 (409)
T ss_pred             CceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEe---CC-CCcHHHHHHHH
Confidence            47888899999999999999999999999999998888666555544   34 55554555555

>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D

Probab=92.03  E-value=0.59  Score=34.26  Aligned_cols=45  Identities=13%  Similarity=0.338  Sum_probs=34.4

Q ss_pred             CCeEEEEEEec----CCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEe
Q 017375          180 KDYSVVTITSK----DRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIR  229 (372)
Q Consensus       180 ~~~t~v~V~~~----DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~  229 (372)
                      .+...|+|.++    |.||+++++++.|++.|++|....  |   ...+.+.|.
T Consensus         4 ~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is--S---~~~~~ilV~   52 (65)
T PF13840_consen    4 EDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS--S---EISISILVK   52 (65)
T ss_dssp             SEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE--E---SSEEEEEEE
T ss_pred             CCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE--E---eeeEEEEEe
Confidence            35678888888    799999999999999999998765  3   334455564

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family

Probab=91.99  E-value=0.72  Score=49.64  Aligned_cols=63  Identities=24%  Similarity=0.279  Sum_probs=46.7

Q ss_pred             eEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEecC-CceEEEEEEecCCCCCCCCCHHHHHHHHHHHH
Q 017375           48 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHN-TRAAALMQVTDEETGGAISDPERLSVIKELLC  117 (372)
Q Consensus        48 ~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~-~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~  117 (372)
                      .+.|.|.+.||+|+|++|+.+++.+++||.+..+.+.. +.+.-.|.|.       +.+.+.+.+|-..|.
T Consensus       610 ~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ie-------V~~~~~L~~ii~~L~  673 (683)
T TIGR00691       610 IVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVE-------IKNYKHLLKIMLKIK  673 (683)
T ss_pred             EEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEE-------ECCHHHHHHHHHHHh
Confidence            45888999999999999999999999999999998863 4444445443       223355566655554

(p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.

>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=91.81  E-value=0.1  Score=40.49  Aligned_cols=61  Identities=16%  Similarity=0.190  Sum_probs=41.6

Q ss_pred             EEEEEecC-CccHHHHHHHHHHhCCceEEEEEEEee-----C----CeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHH
Q 017375          184 VVTITSKD-RPKLVFDTVCTLTDMQYVVFHANIDAE-----G----PEAYQEYFIRHIDGSPVKSDAERERVIQCLKA  251 (372)
Q Consensus       184 ~v~V~~~D-rpGLL~~i~~~L~~~glnI~~A~I~T~-----g----~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~  251 (372)
                      +|+|.++| ++|++++++++|+++|+||.+-+-.+.     +    +...-.|.|..+   +. +   .+.++..|.+
T Consensus         1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~~~---~~-~---~~~lr~~L~~   71 (84)
T cd04871           1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVRGQ---PA-D---LEALRAALLE   71 (84)
T ss_pred             CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEeCC---CC-C---HHHHHHHHHH
Confidence            47899999 999999999999999999965443221     1    344556777532   22 2   2556665553

The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains

>COG1707 ACT domain-containing protein [General function prediction only]

Probab=91.78  E-value=0.68  Score=40.43  Aligned_cols=46  Identities=15%  Similarity=0.451  Sum_probs=37.7

Q ss_pred             EEEEEecCccchHHHHHHHHHhcCceEEEEEEEec-CC-ceEEEEEEe
Q 017375           50 AIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH-NT-RAAALMQVT   95 (372)
Q Consensus        50 ~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~-~~-~~~d~F~V~   95 (372)
                      -+.+.+-++||.|.++++.++++|.||.-|+.+.. +| .+.-.|.+.
T Consensus         4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiE   51 (218)
T COG1707           4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIE   51 (218)
T ss_pred             eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEee
Confidence            46788999999999999999999999999999984 44 444455554

>PRK06545 prephenate dehydrogenase; Validated

Probab=91.74  E-value=0.63  Score=46.02  Aligned_cols=49  Identities=14%  Similarity=0.245  Sum_probs=42.1

Q ss_pred             CceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEE
Q 017375          259 EGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVG  307 (372)
Q Consensus       259 ~~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~  307 (372)
                      ..+.|.|.-+||||.|++|+..|.+.||||.+.+|.-..+...-++.+.
T Consensus       289 ~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~  337 (359)
T PRK06545        289 SFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQIS  337 (359)
T ss_pred             cceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEE
Confidence            4599999999999999999999999999999999976666666666664

>TIGR00657 asp_kinases aspartate kinase

Probab=91.72  E-value=4.8  Score=40.91  Aligned_cols=101  Identities=12%  Similarity=0.152  Sum_probs=65.7

Q ss_pred             CeEEEEEEecCC--ccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhcc--
Q 017375          181 DYSVVTITSKDR--PKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERR--  256 (372)
Q Consensus       181 ~~t~v~V~~~Dr--pGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~r--  256 (372)
                      +...|+|.+.+-  +|.++++.++|.++|++|......+..  ..-.|.|...         ..+...+.|.......  
T Consensus       301 ~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~q~~se--~sIs~~I~~~---------~~~~a~~~L~~~~~~~~~  369 (441)
T TIGR00657       301 NQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQSSSE--TSISFTVDKE---------DADQAKTLLKSELNLSAL  369 (441)
T ss_pred             CEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCC--ceEEEEEEHH---------HHHHHHHHHHHHHHhcCc
Confidence            456777776443  799999999999999999876532322  2223555421         1222222232211111  


Q ss_pred             -----CCCceEEEEEeC---CCcchHHHHHHHHHhCCceEEEEE
Q 017375          257 -----VSEGLKLELCTT---DRVGLLSNVTRIFRENSLTVTRAE  292 (372)
Q Consensus       257 -----~~~~t~lev~~~---DrpGlL~~It~~L~~~gi~I~~a~  292 (372)
                           ...-+.+.+.+.   ++||++++|.++|++.|++|....
T Consensus       370 ~~I~~~~~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~  413 (441)
T TIGR00657       370 SSVEVEKGLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS  413 (441)
T ss_pred             ceEEEcCCeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence                 123477888654   789999999999999999998775

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]

Probab=91.50  E-value=1.1  Score=47.85  Aligned_cols=73  Identities=23%  Similarity=0.178  Sum_probs=50.8

Q ss_pred             EEEEecC-CCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEeeCCCCCCCCHHHHHHHHHHH
Q 017375          172 VNVVNCY-DKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGSPVKSDAERERVIQCL  249 (372)
Q Consensus       172 V~i~~~~-~~~~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g-~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L  249 (372)
                      |.|+.+. ..-...|.|.+.||+|+|.+|+.+|+..+.||......+.. +.+.-.|.+.-      .+-..+..+...|
T Consensus       616 v~W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~v------~n~~~L~~i~~~l  689 (701)
T COG0317         616 VSWGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIEV------KNLNHLGRVLARL  689 (701)
T ss_pred             EEecCCCCcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEEE------CcHHHHHHHHHHH
Confidence            4455553 34556899999999999999999999999999999998864 44443343321      1223555555555


Q ss_pred             H
Q 017375          250 K  250 (372)
Q Consensus       250 ~  250 (372)
                      .
T Consensus       690 ~  690 (701)
T COG0317         690 K  690 (701)
T ss_pred             h
Confidence            4

>PRK08818 prephenate dehydrogenase; Provisional

Probab=91.49  E-value=0.42  Score=47.55  Aligned_cols=48  Identities=19%  Similarity=0.354  Sum_probs=38.4

Q ss_pred             ceEEEEEeC-CCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEc
Q 017375          260 GLKLELCTT-DRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGG  308 (372)
Q Consensus       260 ~t~lev~~~-DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~~  308 (372)
                      .+.|.+.-+ |+||.|++|+..|+.+||||.+.++ .....-+-.|||.-
T Consensus       295 ~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies-~~~r~~~y~f~i~~  343 (370)
T PRK08818        295 PLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHS-SRTPAGELHFRIGF  343 (370)
T ss_pred             ceEEEEECCCCCCChHHHHHHHHHHcCcccceEEE-ecccCceEEEEEEE
Confidence            577788886 9999999999999999999999999 33333333499853

>PLN02551 aspartokinase

Probab=91.36  E-value=14  Score=38.66  Aligned_cols=114  Identities=18%  Similarity=0.205  Sum_probs=72.1

Q ss_pred             CCeEEEEEEec---CCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHH---HHHH
Q 017375          180 KDYSVVTITSK---DRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCL---KAAI  253 (372)
Q Consensus       180 ~~~t~v~V~~~---DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L---~~~L  253 (372)
                      .+.+.|+|.+.   +.+|.++++...|+++|++|...  .+..  ..-.|.+...+   ..   ..+.+++.+   ...|
T Consensus       364 ~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~I--ssSe--~sIs~~v~~~~---~~---~~~~i~~~l~~l~~el  433 (521)
T PLN02551        364 RNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV--ATSE--VSISLTLDPSK---LW---SRELIQQELDHLVEEL  433 (521)
T ss_pred             CCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEE--eccC--CEEEEEEehhH---hh---hhhhHHHHHHHHHHHh
Confidence            35678888765   68999999999999999999876  2322  22346664321   11   112222222   2223


Q ss_pred             hc--c---CCCceEEEEEeC--CCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeE-EEE
Q 017375          254 ER--R---VSEGLKLELCTT--DRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNT-FYV  306 (372)
Q Consensus       254 ~~--r---~~~~t~lev~~~--DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~-F~v  306 (372)
                      .+  +   ......|.|.|.  .+||++.++-++|++.||+|....   +|...... |.|
T Consensus       434 ~~~~~V~v~~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIs---qgaSeinIS~vV  491 (521)
T PLN02551        434 EKIAVVNLLQGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMIS---QGASKVNISLIV  491 (521)
T ss_pred             hcCCeEEEeCCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEE---ecCCCcEEEEEE
Confidence            21  1   123466777754  689999999999999999998877   44444444 444

>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=91.36  E-value=1.3  Score=33.32  Aligned_cols=48  Identities=8%  Similarity=0.128  Sum_probs=34.2

Q ss_pred             EEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEeeCCC
Q 017375          185 VTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDG  233 (372)
Q Consensus       185 v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g-~~~~d~F~V~~~~g  233 (372)
                      +.+..+|+||-|+++...|+.+|+|+.+-.-.... ....-.|+|. .+|
T Consensus         3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd-~~~   51 (74)
T cd04904           3 LIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVD-CEV   51 (74)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEE-EEc
Confidence            44555899999999999999999999875554433 2233456664 445

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy

>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D

Probab=91.01  E-value=1.1  Score=32.78  Aligned_cols=46  Identities=20%  Similarity=0.359  Sum_probs=36.7

Q ss_pred             CCeEEEEEEec----CccchHHHHHHHHHhcCceEEEEEEEecCCceEEEEEEec
Q 017375           46 MDHTAIELTGS----DRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTD   96 (372)
Q Consensus        46 ~~~t~i~v~~~----DrpGLl~~i~~~l~~~glnI~~A~I~T~~~~~~d~F~V~~   96 (372)
                      .+...|+|.++    |.||..++++..|+++|+||.-..  |   ...|.+.|..
T Consensus         4 ~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is--S---~~~~~ilV~~   53 (65)
T PF13840_consen    4 EDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS--S---EISISILVKE   53 (65)
T ss_dssp             SEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE--E---SSEEEEEEEG
T ss_pred             CCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE--E---eeeEEEEEeH
Confidence            46778888888    799999999999999999998555  4   4567777764

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]

Probab=90.86  E-value=0.98  Score=48.29  Aligned_cols=65  Identities=26%  Similarity=0.364  Sum_probs=47.4

Q ss_pred             CCeEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEecCCceEE-EEEEecCCCCCCCCCHHHHHHHHHHHH
Q 017375           46 MDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAA-LMQVTDEETGGAISDPERLSVIKELLC  117 (372)
Q Consensus        46 ~~~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~~~~~d-~F~V~~~~~g~~i~~~~~~~~l~~~L~  117 (372)
                      .-...|.|.+.||+|||++|+.+|+..+.||.+....+.++.... .|.+.       +.+...+.+|-..|.
T Consensus       625 ~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~-------v~n~~~L~~i~~~l~  690 (701)
T COG0317         625 VYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIE-------VKNLNHLGRVLARLK  690 (701)
T ss_pred             ceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEE-------ECcHHHHHHHHHHHh
Confidence            345789999999999999999999999999999888886555444 33333       223355556555554

>PRK09181 aspartate kinase; Validated

Probab=90.80  E-value=5.5  Score=41.06  Aligned_cols=101  Identities=11%  Similarity=0.102  Sum_probs=70.4

Q ss_pred             CeEEEEEEec---CCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhc-c
Q 017375          181 DYSVVTITSK---DRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER-R  256 (372)
Q Consensus       181 ~~t~v~V~~~---DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~-r  256 (372)
                      +.+.|+|.+.   +.+|+++++..+|.++|++|.  .+.+..  ..-.|.|.+.      . ..++++.+.|...+.. .
T Consensus       328 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~--~i~ss~--~sis~~v~~~------~-~~~~~~~~~L~~~~~~~~  396 (475)
T PRK09181        328 KVFALEVFDQDMVGEDGYDLEILEILTRHKVSYI--SKATNA--NTITHYLWGS------L-KTLKRVIAELEKRYPNAE  396 (475)
T ss_pred             CEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEE--EEEecC--cEEEEEEcCC------h-HHHHHHHHHHHHhcCCce
Confidence            5677788654   789999999999999999998  333332  2334666431      1 2345555555544421 1


Q ss_pred             --CCCceEEEEEeCC--CcchHHHHHHHHHhCCceEEEEE
Q 017375          257 --VSEGLKLELCTTD--RVGLLSNVTRIFRENSLTVTRAE  292 (372)
Q Consensus       257 --~~~~t~lev~~~D--rpGlL~~It~~L~~~gi~I~~a~  292 (372)
                        ...-..|.+.|..  +||+..++.++|++.||+|....
T Consensus       397 i~~~~~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~  436 (475)
T PRK09181        397 VTVRKVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLALH  436 (475)
T ss_pred             EEECCceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEE
Confidence              2345788888765  89999999999999999998766

>COG1707 ACT domain-containing protein [General function prediction only]

Probab=90.61  E-value=0.67  Score=40.46  Aligned_cols=45  Identities=20%  Similarity=0.310  Sum_probs=37.4

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEE
Q 017375          262 KLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYV  306 (372)
Q Consensus       262 ~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v  306 (372)
                      -+.+.+.++||.|.++|-.+++.|.||..++-...++-.....|.
T Consensus         4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYm   48 (218)
T COG1707           4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYM   48 (218)
T ss_pred             eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEE
Confidence            467889999999999999999999999999987765544445555

>PRK06291 aspartate kinase; Provisional

Probab=90.53  E-value=23  Score=36.40  Aligned_cols=111  Identities=15%  Similarity=0.177  Sum_probs=68.5

Q ss_pred             CeEEEEEEec---CccchHHHHHHHHHhcCceEEEEEEEecCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHhhcCC
Q 017375           47 DHTAIELTGS---DRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKGS  123 (372)
Q Consensus        47 ~~t~i~v~~~---DrpGLl~~i~~~l~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~L~~~  123 (372)
                      +...|.|.+.   +.+|+++++..+|.++|++|.--...+ . ..--.|.|..          +..++..+.|.+.+...
T Consensus       320 ~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~s-s-e~sIsf~V~~----------~d~~~av~~L~~~~~~~  387 (465)
T PRK06291        320 NVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGS-S-ESNISLVVDE----------ADLEKALKALRREFGEG  387 (465)
T ss_pred             CEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecC-C-CceEEEEEeH----------HHHHHHHHHHHHHHHHh
Confidence            4567777764   689999999999999999998543222 1 1223455543          11122233344333211


Q ss_pred             CCCCcccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCCEEEEEecCCCCeEEEEEEec---CCccHHHHHH
Q 017375          124 NKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSK---DRPKLVFDTV  200 (372)
Q Consensus       124 ~~~~~~~~~l~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~v~V~~~---DrpGLL~~i~  200 (372)
                      . .                                           ..|.+.    .+...|.|.+.   +++|++.++.
T Consensus       388 ~-~-------------------------------------------~~i~~~----~~~a~IsvvG~gm~~~~gv~~rif  419 (465)
T PRK06291        388 L-V-------------------------------------------RDVTFD----KDVCVVAVVGAGMAGTPGVAGRIF  419 (465)
T ss_pred             c-C-------------------------------------------cceEEe----CCEEEEEEEcCCccCCcChHHHHH
Confidence            0 0                                           012221    24567777775   6999999999


Q ss_pred             HHHHhCCceEEEEEEEe
Q 017375          201 CTLTDMQYVVFHANIDA  217 (372)
Q Consensus       201 ~~L~~~glnI~~A~I~T  217 (372)
                      .+|.+.|+||..-...+
T Consensus       420 ~aL~~~~I~v~~isqgs  436 (465)
T PRK06291        420 SALGESGINIKMISQGS  436 (465)
T ss_pred             HHHHHCCCCEEEEEecc
Confidence            99999999998544333

>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes

Probab=89.88  E-value=2.2  Score=32.19  Aligned_cols=49  Identities=12%  Similarity=0.123  Sum_probs=35.3

Q ss_pred             EEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEeeCCCC
Q 017375          185 VTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGS  234 (372)
Q Consensus       185 v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g-~~~~d~F~V~~~~g~  234 (372)
                      +.+..+|+||-|+++-..|+.+|+|+.+-.-.... ....-.|||. .+|.
T Consensus         3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id-~e~~   52 (74)
T cd04929           3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVD-CECD   52 (74)
T ss_pred             EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEE-EEcC
Confidence            44555899999999999999999999876665533 2233457774 3454

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06349 homoserine dehydrogenase; Provisional

Probab=89.85  E-value=1.4  Score=44.64  Aligned_cols=65  Identities=18%  Similarity=0.303  Sum_probs=47.4

Q ss_pred             ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 017375          260 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQ  328 (372)
Q Consensus       260 ~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~  328 (372)
                      .+.|.+...|+||.|.+|+..|.+++++|.+..-....+.....++++..    .+...+++..++|.+
T Consensus       348 ~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~~----~~e~~l~~~i~~L~~  412 (426)
T PRK06349        348 KYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTHE----TSEAALRAALAAIEA  412 (426)
T ss_pred             eEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEEe----CCHHHHHHHHHHHhc
Confidence            48899999999999999999999999999988765443345566777643    223345555555543

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=89.66  E-value=1.6  Score=44.07  Aligned_cols=50  Identities=14%  Similarity=0.254  Sum_probs=44.0

Q ss_pred             CCeEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEecCCceEEEEEEe
Q 017375           46 MDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVT   95 (372)
Q Consensus        46 ~~~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~~~~~d~F~V~   95 (372)
                      .....|.+.-.|+||.+++|+.+|+++|+||..-++++.++.+.-+|-+.
T Consensus       336 ~~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~D  385 (409)
T PRK11790        336 PGGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDVD  385 (409)
T ss_pred             CCCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEeC
Confidence            36678888999999999999999999999999999988888877777553

>PRK06382 threonine dehydratase; Provisional

Probab=89.64  E-value=2.1  Score=43.15  Aligned_cols=67  Identities=22%  Similarity=0.179  Sum_probs=48.1

Q ss_pred             CCCeEEEEEEecCccchHHHHHHHHHhcCceEEEEEEE----e-cCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017375           45 SMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVW----T-HNTRAAALMQVTDEETGGAISDPERLSVIKELLCN  118 (372)
Q Consensus        45 ~~~~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~----T-~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~  118 (372)
                      .+..+.+.|..+|+||-|++++.+|.++|+||.+-...    . ..+...-+|.|...       +++..+.|.+.|.+
T Consensus       327 ~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~-------~~~~~~~v~~~L~~  398 (406)
T PRK06382        327 LGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR-------GQDHLDRILNALRE  398 (406)
T ss_pred             cCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC-------CHHHHHHHHHHHHH
Confidence            45678999999999999999999999999999877654    2 24455566766531       22333456655553

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=89.62  E-value=0.85  Score=47.58  Aligned_cols=62  Identities=23%  Similarity=0.479  Sum_probs=45.6

Q ss_pred             CceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecC--CeeeeEEEEEcCCCCCCCHHHHHHHHH
Q 017375          259 EGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKS--GKAVNTFYVGGASGYPVDAKIIDSIRQ  324 (372)
Q Consensus       259 ~~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g--~~~~d~F~v~~~~g~~~~~~~~~~l~~  324 (372)
                      .++.+-+.-.|+||.+..|+..|.+++|||..+++.-..  +.+.=++-+    ..+++++.+++|++
T Consensus       451 ~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~----D~~v~~~~l~~i~~  514 (526)
T PRK13581        451 EGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSV----DDPVPEEVLEELRA  514 (526)
T ss_pred             CceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEEC----CCCCCHHHHHHHhc
Confidence            456666677999999999999999999999999987643  333333333    34667766676664

>PRK08210 aspartate kinase I; Reviewed

Probab=89.36  E-value=22  Score=35.58  Aligned_cols=99  Identities=23%  Similarity=0.310  Sum_probs=62.2

Q ss_pred             CeEEEEEEecCc-cchHHHHHHHHHhcCceEEEEEEEecCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHhhcCCCC
Q 017375           47 DHTAIELTGSDR-PGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKGSNK  125 (372)
Q Consensus        47 ~~t~i~v~~~Dr-pGLl~~i~~~l~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~L~~~~~  125 (372)
                      +...|+|...+. ||.+++|...|.++|+||.--..+  ..  .-.|.+..          +..+++...|.+ + + . 
T Consensus       270 ~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~--~~--~is~~v~~----------~~~~~a~~~l~~-~-~-~-  331 (403)
T PRK08210        270 NVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIF--PT--EVVFTVSD----------EDSEKAKEILEN-L-G-L-  331 (403)
T ss_pred             CcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEec--Cc--eEEEEEcH----------HHHHHHHHHHHH-h-C-C-
Confidence            445666665554 999999999999999999966332  11  23455532          112233333332 1 0 0 


Q ss_pred             CCcccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCCEEEEEecCCCCeEEEEEEe---cCCccHHHHHHHH
Q 017375          126 SGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITS---KDRPKLVFDTVCT  202 (372)
Q Consensus       126 ~~~~~~~l~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~v~V~~---~DrpGLL~~i~~~  202 (372)
                                                                   .+.+    ..+...|.|.+   .++||+++++..+
T Consensus       332 ---------------------------------------------~v~~----~~~~a~isvvG~~~~~~~g~~~~i~~a  362 (403)
T PRK08210        332 ---------------------------------------------KPSV----RENCAKVSIVGAGMAGVPGVMAKIVTA  362 (403)
T ss_pred             ---------------------------------------------cEEE----eCCcEEEEEEcCCcCCCccHHHHHHHH
Confidence                                                         0111    12345666665   4799999999999


Q ss_pred             HHhCCceEEE
Q 017375          203 LTDMQYVVFH  212 (372)
Q Consensus       203 L~~~glnI~~  212 (372)
                      |++.|+||..
T Consensus       363 L~~~~I~i~~  372 (403)
T PRK08210        363 LSEEGIEILQ  372 (403)
T ss_pred             HHhCCCCEEE
Confidence            9999999974

>PRK09224 threonine dehydratase; Reviewed

Probab=89.23  E-value=19  Score=37.34  Aligned_cols=108  Identities=13%  Similarity=0.121  Sum_probs=72.1

Q ss_pred             CCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHH-H-----
Q 017375          180 KDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAA-I-----  253 (372)
Q Consensus       180 ~~~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~-L-----  253 (372)
                      .....+.|.-|||||-|..++.+|.  +.||...+-.-.+.....+|......+.    +...+.|.+.|.+. .     
T Consensus       326 ~re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~vgie~~~~----~~~~~~i~~~L~~~gy~~~~l  399 (504)
T PRK09224        326 QREALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIFVGVQLSRG----QEERAEIIAQLRAHGYPVVDL  399 (504)
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEEEEEEeCCh----hhHHHHHHHHHHHcCCCeEEC
Confidence            3466889999999999999999999  5777765544333223334433332221    11256677666543 0     


Q ss_pred             --------------hccCC---CceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEe
Q 017375          254 --------------ERRVS---EGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVA  294 (372)
Q Consensus       254 --------------~~r~~---~~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~  294 (372)
                                    .+|.+   ..-.+.+.=+.|||-|-++...|. -+-||...+-.
T Consensus       400 s~ne~~k~h~r~~~g~~~~~~~~e~~~~~~fPerpGal~~Fl~~l~-~~~~It~f~Yr  456 (504)
T PRK09224        400 SDDELAKLHVRYMVGGRPPKPLDERLYRFEFPERPGALLKFLSTLG-THWNISLFHYR  456 (504)
T ss_pred             CCCHHHHHHHHhccCCCCCCCCceEEEEEeCCCCCCHHHHHHHhcC-CCCeeEEEEEc
Confidence                          11232   235788899999999999999777 77899998864

>PLN02317 arogenate dehydratase

Probab=88.95  E-value=2.1  Score=42.73  Aligned_cols=66  Identities=14%  Similarity=0.200  Sum_probs=47.6

Q ss_pred             eEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCe---------------eeeEEEEEcCCCCCCCHHHHHHHHHH
Q 017375          261 LKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGK---------------AVNTFYVGGASGYPVDAKIIDSIRQS  325 (372)
Q Consensus       261 t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~---------------~~d~F~v~~~~g~~~~~~~~~~l~~~  325 (372)
                      |.|-+.-.|+||.|+++-.+|+.+|||+.+.+-.-...+               -+=.||| |..|..-++ .++..-+.
T Consensus       284 TSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyV-D~eg~~~d~-~~~~aL~~  361 (382)
T PLN02317        284 TSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYV-DFEASMADP-RAQNALAH  361 (382)
T ss_pred             EEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEE-EEEcCcCCH-HHHHHHHH
Confidence            777778889999999999999999999999997765443               2348888 566754443 33333344


Q ss_pred             HHH
Q 017375          326 IGQ  328 (372)
Q Consensus       326 l~~  328 (372)
                      |.+
T Consensus       362 L~~  364 (382)
T PLN02317        362 LQE  364 (382)
T ss_pred             HHH
Confidence            443

>PRK09034 aspartate kinase; Reviewed

Probab=88.94  E-value=30  Score=35.46  Aligned_cols=111  Identities=9%  Similarity=0.132  Sum_probs=66.7

Q ss_pred             CeEEEEEEe---cCccchHHHHHHHHHhcCceEEEEEEEecCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHhhcCC
Q 017375           47 DHTAIELTG---SDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKGS  123 (372)
Q Consensus        47 ~~t~i~v~~---~DrpGLl~~i~~~l~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~L~~~  123 (372)
                      +.+.|++..   ++++|.+++|..+|+++|++|.--   +.+ ...-.|.|...  .  + +...+..+...|.    .+
T Consensus       307 ~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i---~ss-~~sis~~v~~~--~--~-~~a~~~~l~~el~----~~  373 (454)
T PRK09034        307 GFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHM---PSG-IDDLSIIIRER--Q--L-TPKKEDEILAEIK----QE  373 (454)
T ss_pred             CEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEE---cCC-CcEEEEEEeHH--H--h-hHHHHHHHHHHHH----Hh
Confidence            345666664   668999999999999999999864   222 23345767541  1  1 1000012222221    11


Q ss_pred             CCCCcccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCCEEEEEecCCCCeEEEEEEe---cCCccHHHHHH
Q 017375          124 NKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITS---KDRPKLVFDTV  200 (372)
Q Consensus       124 ~~~~~~~~~l~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~v~V~~---~DrpGLL~~i~  200 (372)
                      ...                                           ..|.+.    .+...|.+.+   .+.||+++++.
T Consensus       374 ~~~-------------------------------------------~~I~~~----~~va~VsivG~g~~~~~gv~arif  406 (454)
T PRK09034        374 LNP-------------------------------------------DELEIE----HDLAIIMVVGEGMRQTVGVAAKIT  406 (454)
T ss_pred             hCC-------------------------------------------ceEEEe----CCEEEEEEECCCCCCCccHHHHHH
Confidence            100                                           112221    2456777765   47899999999


Q ss_pred             HHHHhCCceEEEEEEEe
Q 017375          201 CTLTDMQYVVFHANIDA  217 (372)
Q Consensus       201 ~~L~~~glnI~~A~I~T  217 (372)
                      .+|+++|+||......+
T Consensus       407 ~aL~~~~InV~mIsq~~  423 (454)
T PRK09034        407 KALAEANINIQMINQGS  423 (454)
T ss_pred             HHHHHCCCCEEEEEecC
Confidence            99999999998765433

>PRK14646 hypothetical protein; Provisional

Probab=88.69  E-value=5.7  Score=34.54  Aligned_cols=93  Identities=14%  Similarity=0.136  Sum_probs=66.2

Q ss_pred             cHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhc--cCCCceEEEEEeCCC
Q 017375          194 KLVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER--RVSEGLKLELCTTDR  270 (372)
Q Consensus       194 GLL~~i~~~L~~~glnI~~A~I~T~g-~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~--r~~~~t~lev~~~Dr  270 (372)
                      -+...+..++..+|+.+.+......+ ++++ ..+|..++|..++- +.++.+-+.+.+.|+.  -.+..|.|||+++.=
T Consensus         8 ~i~~li~p~~~~~G~eLvdve~~~~~~~~~L-rV~IDk~~g~gVtl-dDC~~vSr~is~~LD~~D~i~~~Y~LEVSSPGl   85 (155)
T PRK14646          8 KLEILLEKVANEFDLKICSLNIQTNQNPIVI-KIIIKKTNGDDISL-DDCALFNTPASEEIENSNLLNCSYVLEISSQGV   85 (155)
T ss_pred             HHHHHHHHHHHHcCCEEEEEEEEeCCCCeEE-EEEEECCCCCCccH-HHHHHHHHHHHHHhCcCCCCCCCeEEEEcCCCC
Confidence            45667888899999999999999876 4555 45565444444555 4788899999888874  356789999997644


Q ss_pred             cchHHHHHHHHHhCCceE
Q 017375          271 VGLLSNVTRIFRENSLTV  288 (372)
Q Consensus       271 pGlL~~It~~L~~~gi~I  288 (372)
                      ---|..--.+-+-.|=.|
T Consensus        86 dRpL~~~~df~r~~G~~v  103 (155)
T PRK14646         86 SDELTSERDFKTFKGFPV  103 (155)
T ss_pred             CCcCCCHHHHHHhCCCEE
Confidence            334666666666656444

>PRK12483 threonine dehydratase; Reviewed

Probab=88.44  E-value=24  Score=36.82  Aligned_cols=136  Identities=8%  Similarity=0.081  Sum_probs=82.1

Q ss_pred             CCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHH-HHHHHHHHHH------
Q 017375          180 KDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAER-ERVIQCLKAA------  252 (372)
Q Consensus       180 ~~~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~-e~l~~~L~~~------  252 (372)
                      .....+.|.-+||||-|.+++.+|...  ||.+..-......-..++......+     .+.. +.|.+.|.+.      
T Consensus       343 ~r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~~-----~~~~~~~i~~~l~~~g~~~~d  415 (521)
T PRK12483        343 QREAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREAHLFVGVQTHP-----RHDPRAQLLASLRAQGFPVLD  415 (521)
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeEEEEEEEeCC-----hhhhHHHHHHHHHHCCCCeEE
Confidence            456688999999999999999999988  7776554433322223333332211     1233 5666665433      


Q ss_pred             --------------HhccCC---CceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCC
Q 017375          253 --------------IERRVS---EGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVD  315 (372)
Q Consensus       253 --------------L~~r~~---~~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~~~~g~~~~  315 (372)
                                    +.+|.+   +.-.+.|.=+.|||-|.++++.|... -||+..+=.-.|.....+|.=-.     +.
T Consensus       416 lsdne~~k~h~r~~~g~~~~~~~~E~~~~v~iPE~pGa~~~f~~~l~~~-~niTeF~YR~~~~~~a~v~vgi~-----~~  489 (521)
T PRK12483        416 LTDDELAKLHIRHMVGGRAPLAHDERLFRFEFPERPGALMKFLSRLGPR-WNISLFHYRNHGAADGRVLAGLQ-----VP  489 (521)
T ss_pred             CCCCHHHHHHHHhccCCCCCCCCceEEEEEEcCCCCcHHHHHHHHhCCC-cceeeeeecCCCCCceEEEEEEe-----eC
Confidence                          011232   34688899999999999999999852 34444443333555555654322     12


Q ss_pred             HHHHHHHHHHHHH
Q 017375          316 AKIIDSIRQSIGQ  328 (372)
Q Consensus       316 ~~~~~~l~~~l~~  328 (372)
                      +++.+.+.+.|.+
T Consensus       490 ~~~~~~~~~~l~~  502 (521)
T PRK12483        490 EDERAALDAALAA  502 (521)
T ss_pred             hhHHHHHHHHHHH
Confidence            2345666666654

>PRK06382 threonine dehydratase; Provisional

Probab=88.42  E-value=3.2  Score=41.79  Aligned_cols=51  Identities=12%  Similarity=0.169  Sum_probs=39.2

Q ss_pred             CCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe----e-CCeEEEEEEEe
Q 017375          179 DKDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDA----E-GPEAYQEYFIR  229 (372)
Q Consensus       179 ~~~~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T----~-g~~~~d~F~V~  229 (372)
                      ....+.+.|.-+|+||-|.+++..|.++|+||.+.....    . .+...-+|.|.
T Consensus       327 ~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~ve  382 (406)
T PRK06382        327 LGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVN  382 (406)
T ss_pred             cCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEE
Confidence            356779999999999999999999999999998766541    1 24455455554

>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=88.26  E-value=4.3  Score=31.25  Aligned_cols=61  Identities=20%  Similarity=0.268  Sum_probs=36.7

Q ss_pred             EEEEEecCccchHHHHHHHHHhcCceEEEEEEEec-CCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017375           50 AIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH-NTRAAALMQVTDEETGGAISDPERLSVIKELLCN  118 (372)
Q Consensus        50 ~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~-~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~  118 (372)
                      .+.|.-+|+||=|++++.+|.  +.||....-.-. .+.+.-.+.+.-+  ++    ++..+.+.+.|.+
T Consensus         3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~--~~----~~~~~~i~~~L~~   64 (85)
T cd04906           3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVA--NG----AEELAELLEDLKS   64 (85)
T ss_pred             EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeC--Cc----HHHHHHHHHHHHH
Confidence            577889999999999999999  667664433332 2333223333321  10    3445666666654

This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII

Probab=87.86  E-value=5.2  Score=30.15  Aligned_cols=62  Identities=13%  Similarity=0.196  Sum_probs=39.2

Q ss_pred             eEEEEE---eCCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCCHHHHH-HHHHHHHH
Q 017375          261 LKLELC---TTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIID-SIRQSIGQ  328 (372)
Q Consensus       261 t~lev~---~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~~~~g~~~~~~~~~-~l~~~l~~  328 (372)
                      +.|+|.   ..++||++++|..+|+++||+|.....   ++ ..=.|-|..  ......+.+. +|..+|..
T Consensus         2 ~~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDmI~~---s~-~~iSftv~~--~d~~~~~~~~~~l~~~l~~   67 (75)
T cd04932           2 TLVTLKSPNMLHAQGFLAKVFGILAKHNISVDLITT---SE-ISVALTLDN--TGSTSDQLLTQALLKELSQ   67 (75)
T ss_pred             EEEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEee---cC-CEEEEEEec--cccchhHHHHHHHHHHHHh
Confidence            356663   468899999999999999999999842   22 333444432  2222222333 56666655

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK14634 hypothetical protein; Provisional

Probab=87.84  E-value=6.7  Score=34.08  Aligned_cols=90  Identities=20%  Similarity=0.177  Sum_probs=63.5

Q ss_pred             ccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhc--cCCCceEEEEEeC-
Q 017375          193 PKLVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER--RVSEGLKLELCTT-  268 (372)
Q Consensus       193 pGLL~~i~~~L~~~glnI~~A~I~T~g-~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~--r~~~~t~lev~~~-  268 (372)
                      .-+-..+..++..+|+.+.+..+...+ ++++- .+|..++|..++- +.++.+-+.+...|+.  -.+..|.|||+++ 
T Consensus         7 ~~i~~l~~~~~~~~G~elvdve~~~~~~~~~lr-V~ID~~~g~~v~l-ddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPG   84 (155)
T PRK14634          7 PDLETLASATAADKGFELCGIQVLTHLQPMTLQ-VQIRRSSGSDVSL-DDCAGFSGPMGEALEASQLLTEAYVLEISSPG   84 (155)
T ss_pred             HHHHHHHHHHHHHcCCEEEEEEEEeCCCCcEEE-EEEECCCCCcccH-HHHHHHHHHHHHHhcccccCCCCeEEEEeCCC
Confidence            345666777889999999999998876 45554 4565556654655 4788899999888874  2467899999976 


Q ss_pred             -CCcchHHHHHHHHHhCCc
Q 017375          269 -DRVGLLSNVTRIFRENSL  286 (372)
Q Consensus       269 -DrpGlL~~It~~L~~~gi  286 (372)
                       |||  |..--++-+-.|=
T Consensus        85 ldRp--L~~~~~f~r~~G~  101 (155)
T PRK14634         85 IGDQ--LSSDRDFQTFRGF  101 (155)
T ss_pred             CCCc--CCCHHHHHHhCCC
Confidence             555  5455555555443

>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein

Probab=87.66  E-value=3.6  Score=31.01  Aligned_cols=56  Identities=20%  Similarity=0.326  Sum_probs=38.2

Q ss_pred             eCCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCC-CCHHHHHHHHHHHHH
Q 017375          267 TTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYP-VDAKIIDSIRQSIGQ  328 (372)
Q Consensus       267 ~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~~~~g~~-~~~~~~~~l~~~l~~  328 (372)
                      ..+.||++++|-++|+++|++|...-.   ++ ..=.|-|..  ... +.++.+++|.++|..
T Consensus        11 ~~~~~g~~~~IF~~La~~~I~vDmI~~---s~-~~isftv~~--~~~~~~~~~~~~l~~el~~   67 (75)
T cd04935          11 MWQQVGFLADVFAPFKKHGVSVDLVST---SE-TNVTVSLDP--DPNGLDPDVLDALLDDLNQ   67 (75)
T ss_pred             CCCccCHHHHHHHHHHHcCCcEEEEEe---CC-CEEEEEEeC--cccccchHHHHHHHHHHHh
Confidence            457899999999999999999999842   33 222444432  221 344466777777765

This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=87.55  E-value=1.1  Score=46.69  Aligned_cols=62  Identities=19%  Similarity=0.460  Sum_probs=45.8

Q ss_pred             CceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeec--CCeeeeEEEEEcCCCCCCCHHHHHHHHH
Q 017375          259 EGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATK--SGKAVNTFYVGGASGYPVDAKIIDSIRQ  324 (372)
Q Consensus       259 ~~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~--g~~~~d~F~v~~~~g~~~~~~~~~~l~~  324 (372)
                      .++.+-+.-.|+||.+..|+..|.+++|||..+++.-.  |+.+.=++-+    ..+++++.+++|++
T Consensus       450 ~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~----D~~v~~~~l~~i~~  513 (525)
T TIGR01327       450 EGIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSL----DQPVPDEVLEEIKA  513 (525)
T ss_pred             CccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEc----CCCCCHHHHHHHhc
Confidence            35666667799999999999999999999999998755  4444433333    33677767777764

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK14636 hypothetical protein; Provisional

Probab=87.39  E-value=5.8  Score=35.26  Aligned_cols=91  Identities=10%  Similarity=0.069  Sum_probs=63.0

Q ss_pred             CccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhc--cCCCceEEEEEeC
Q 017375          192 RPKLVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER--RVSEGLKLELCTT  268 (372)
Q Consensus       192 rpGLL~~i~~~L~~~glnI~~A~I~T~g-~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~--r~~~~t~lev~~~  268 (372)
                      .+-+...+..++..+|+.+.+..+...+ .+++- .+|..+++..++- +.++.+-+.|...|+.  -.+..|.|||+++
T Consensus         4 ~~~i~~lvep~~~~~GleLvdve~~~~~~~~~lr-V~ID~~~~ggV~l-DDC~~vSr~Is~~LD~~d~i~~~Y~LEVSSP   81 (176)
T PRK14636          4 IAALTALIEPEAKALGLDLVRVAMFGGKSDPTLQ-IMAERPDTRQLVI-EDCAALSRRLSDVFDELDPIEDAYRLEVSSP   81 (176)
T ss_pred             HHHHHHHHHHHHHHcCCEEEEEEEEcCCCCeEEE-EEEECCCCCCcCH-HHHHHHHHHHHHHhccCcCCCCCeEEEEeCC
Confidence            3446667888899999999999998876 45554 4454444344554 4788899999988874  3567899999976


Q ss_pred             --CCcchHHHHHHHHHhCCc
Q 017375          269 --DRVGLLSNVTRIFRENSL  286 (372)
Q Consensus       269 --DrpGlL~~It~~L~~~gi  286 (372)
                        |||  |..--.+-+-.|=
T Consensus        82 GldRp--L~~~~df~r~~G~   99 (176)
T PRK14636         82 GIDRP--LTRPKDFADWAGH   99 (176)
T ss_pred             CCCCC--CCCHHHHHHhCCC
Confidence              555  4444444444443

>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=87.09  E-value=5.2  Score=30.77  Aligned_cols=61  Identities=15%  Similarity=0.154  Sum_probs=37.5

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecC-CeeeeEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 017375          262 KLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKS-GKAVNTFYVGGASGYPVDAKIIDSIRQSIGQ  328 (372)
Q Consensus       262 ~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g-~~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~  328 (372)
                      ++.|.-+||||=|.+++++|+  +.||....-.-.+ +.+.-.+-+....|    .++.+.+.+.|.+
T Consensus         3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~~~----~~~~~~i~~~L~~   64 (85)
T cd04906           3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVANG----AEELAELLEDLKS   64 (85)
T ss_pred             EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeCCc----HHHHHHHHHHHHH
Confidence            577889999999999999999  4555544333222 33333333332211    3466777777665

This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]

Probab=87.08  E-value=24  Score=36.17  Aligned_cols=113  Identities=10%  Similarity=0.126  Sum_probs=70.5

Q ss_pred             CCeEEEEEEecC---CccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhc-
Q 017375          180 KDYSVVTITSKD---RPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER-  255 (372)
Q Consensus       180 ~~~t~v~V~~~D---rpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~-  255 (372)
                      .+.+.|+|.+..   .+|.++++...|.++|+||..-........  -.|.+...         ..+...+.|.+.... 
T Consensus       305 ~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~--i~~~v~~~---------~~~~a~~~l~~~~~~~  373 (447)
T COG0527         305 DNVALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVS--ISFTVPES---------DAPRALRALLEEKLEL  373 (447)
T ss_pred             CCeEEEEEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCe--EEEEEchh---------hHHHHHHHHHHHHhhh
Confidence            456677777543   459999999999999999976433322222  45666431         122233333333221 


Q ss_pred             --c--C-CCceEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEE
Q 017375          256 --R--V-SEGLKLELCTT---DRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVG  307 (372)
Q Consensus       256 --r--~-~~~t~lev~~~---DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~  307 (372)
                        +  . ..-..|.+.|.   ..||+.+++.++|++.+|||.+..    .....=.|.|.
T Consensus       374 ~~~v~~~~~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~is----sSe~~Is~vV~  429 (447)
T COG0527         374 LAEVEVEEGLALVSIVGAGMRSNPGVAARIFQALAEENINIIMIS----SSEISISFVVD  429 (447)
T ss_pred             cceEEeeCCeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEE----cCCceEEEEEc
Confidence              1  1 12356666654   679999999999999999999887    22333456663

>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]

Probab=86.93  E-value=2  Score=37.38  Aligned_cols=61  Identities=11%  Similarity=0.266  Sum_probs=41.5

Q ss_pred             eEEEEEe--CCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCCHHHHHHHH
Q 017375          261 LKLELCT--TDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIR  323 (372)
Q Consensus       261 t~lev~~--~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~~~~g~~~~~~~~~~l~  323 (372)
                      -+||+..  .+.||+|+.|+..++++|++|..+-..--.-..+-..||.  .-+|+..+.+.+|+
T Consensus        94 gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~~dpe~~~e~~l~IV--te~~iP~~li~el~  156 (167)
T COG2150          94 GVIEIYPEDARYPGILAGVASLIAKRGISIRQIISEDPELQEEPKLTIV--TERPIPGDLIDELK  156 (167)
T ss_pred             eEEEEEeccCCCccHHHHHHHHHHHcCceEEEEecCCcccCCCceEEEE--EeccCCHHHHHHHh
Confidence            4555554  6679999999999999999999987543333444455553  24466665555554

>PRK11899 prephenate dehydratase; Provisional

Probab=86.75  E-value=4.5  Score=38.69  Aligned_cols=53  Identities=9%  Similarity=0.235  Sum_probs=40.4

Q ss_pred             eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEeeCCCCC
Q 017375          182 YSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGSP  235 (372)
Q Consensus       182 ~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g-~~~~d~F~V~~~~g~~  235 (372)
                      .|.+.+..+|+||.|+++.++|+.+|+|+.+-.-.-.+ +...-.|||. .+|..
T Consensus       194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id-~eg~~  247 (279)
T PRK11899        194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYAD-IEGHP  247 (279)
T ss_pred             eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEE-EECCC
Confidence            57777777999999999999999999999876665443 3345567774 56653

>PRK14630 hypothetical protein; Provisional

Probab=86.01  E-value=10  Score=32.56  Aligned_cols=88  Identities=8%  Similarity=0.012  Sum_probs=60.9

Q ss_pred             CccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhccCCCceEEEEEeC--
Q 017375          192 RPKLVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRVSEGLKLELCTT--  268 (372)
Q Consensus       192 rpGLL~~i~~~L~~~glnI~~A~I~T~g-~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~r~~~~t~lev~~~--  268 (372)
                      .--+-..+..++..+|+.+.+......+ ++.+ ..+|..++|  ++- +.++.+-+.+...|+.-.+..|.|||+++  
T Consensus         7 ~~~i~~li~~~~~~~G~eLvdve~~~~~~~~~l-rV~Id~~~g--V~i-dDC~~vSr~i~~~ld~~i~~~Y~LEVSSPGl   82 (143)
T PRK14630          7 NSEVYNLIKNVTDRLGIEIIEINTFRNRNEGKI-QIVLYKKDS--FGV-DTLCDLHKMILLILEAVLKYNFSLEISTPGI   82 (143)
T ss_pred             HHHHHHHHHHHHHHcCCEEEEEEEEecCCCcEE-EEEEECCCC--CCH-HHHHHHHHHHHHHhcccCCCCeEEEEeCCCC
Confidence            3345667788899999999999988766 4555 444654444  444 47888888888888765577899999976  


Q ss_pred             CCcchHHHHHHHHHhCC
Q 017375          269 DRVGLLSNVTRIFRENS  285 (372)
Q Consensus       269 DrpGlL~~It~~L~~~g  285 (372)
                      |||  |...-++-+-.|
T Consensus        83 dRp--L~~~~df~r~~G   97 (143)
T PRK14630         83 NRK--IKSDREFKIFEG   97 (143)
T ss_pred             CCc--CCCHHHHHHhCC
Confidence            555  444444444444

>PRK06545 prephenate dehydrogenase; Validated

Probab=85.77  E-value=2.8  Score=41.38  Aligned_cols=41  Identities=10%  Similarity=0.118  Sum_probs=36.5

Q ss_pred             CCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCC
Q 017375          180 KDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGP  220 (372)
Q Consensus       180 ~~~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g~  220 (372)
                      ..++.|.|.-+|+||-+++++..|...|+||.+-+|.-..+
T Consensus       288 ~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~  328 (359)
T PRK06545        288 PSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEARE  328 (359)
T ss_pred             CcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccC
Confidence            45789999999999999999999999999999999966443

>PRK14645 hypothetical protein; Provisional

Probab=85.74  E-value=12  Score=32.50  Aligned_cols=92  Identities=22%  Similarity=0.266  Sum_probs=64.5

Q ss_pred             ccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhcc--CCCceEEEEEeCC
Q 017375          193 PKLVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERR--VSEGLKLELCTTD  269 (372)
Q Consensus       193 pGLL~~i~~~L~~~glnI~~A~I~T~g-~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~r--~~~~t~lev~~~D  269 (372)
                      .-+-..+..++..+|+.+.+..+...+ ++++- .+|..++|..++- +.++.+-+.+...|+..  .+..|.|||+++.
T Consensus         9 ~~i~~li~~~~~~~G~elvdve~~~~~~~~ilr-V~ID~~~~~~v~l-ddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPG   86 (154)
T PRK14645          9 PDLQQLAEGALEPLGYEVLEVQVQRSGGKRIVL-VRIDRKDEQPVTV-EDLERASRALEAELDRLDPIEGEYRLEVESPG   86 (154)
T ss_pred             HHHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEE-EEEECCCCCCcCH-HHHHHHHHHHHHHhcccccCCCceEEEEeCCC
Confidence            346677788999999999999998776 45554 4454334545655 47888999999888743  4678999999763


Q ss_pred             CcchHHHHHHHHHhCCc
Q 017375          270 RVGLLSNVTRIFRENSL  286 (372)
Q Consensus       270 rpGlL~~It~~L~~~gi  286 (372)
                      ----|...-.+.+-.|-
T Consensus        87 ldRpL~~~~df~r~~G~  103 (154)
T PRK14645         87 PKRPLFTARHFERFAGL  103 (154)
T ss_pred             CCCCCCCHHHHHHhCCC
Confidence            33335555566555553

>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH)

Probab=85.49  E-value=4.8  Score=33.16  Aligned_cols=52  Identities=8%  Similarity=0.058  Sum_probs=36.7

Q ss_pred             eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEeeCCCC
Q 017375          182 YSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGS  234 (372)
Q Consensus       182 ~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g-~~~~d~F~V~~~~g~  234 (372)
                      .+.+.+..+|+||-|+++-..|+.+|+|+.+-.-.... ....-.|+|. .+|.
T Consensus        41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfId-ieg~   93 (115)
T cd04930          41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVR-CEVH   93 (115)
T ss_pred             cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEE-EEeC
Confidence            45666666999999999999999999999876655543 2222346663 3453

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08198 threonine dehydratase; Provisional

Probab=85.24  E-value=6.6  Score=39.37  Aligned_cols=38  Identities=21%  Similarity=0.352  Sum_probs=33.8

Q ss_pred             CCCeEEEEEEecCccchHHHHHHHHHhcCceEEEEEEE
Q 017375           45 SMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVW   82 (372)
Q Consensus        45 ~~~~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~   82 (372)
                      ......+.|.-+|+||-|+++...++.+|.||.+-...
T Consensus       324 ~gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~  361 (404)
T PRK08198        324 AGRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHD  361 (404)
T ss_pred             cCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE
Confidence            34557899999999999999999999999999988765

>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]

Probab=85.09  E-value=1.9  Score=40.24  Aligned_cols=65  Identities=9%  Similarity=0.129  Sum_probs=44.6

Q ss_pred             eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEE--EEEEeeCCCCCCCCHHHHHHHHHHHHHHH
Q 017375          182 YSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQ--EYFIRHIDGSPVKSDAERERVIQCLKAAI  253 (372)
Q Consensus       182 ~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d--~F~V~~~~g~~~~~~~~~e~l~~~L~~~L  253 (372)
                      ..++.+...|.||++.+|+++|+..|+||.+--+.-....+.-  +..+.   |.   + .-+|+.++.|+...
T Consensus        77 rHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~---Gt---d-~VveQa~rQiedlV  143 (309)
T KOG2663|consen   77 RHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQ---GT---D-GVVEQARRQIEDLV  143 (309)
T ss_pred             ceeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEEe---cc---H-HHHHHHHHHHHHhh
Confidence            4588999999999999999999999999998777554433333  33333   21   2 24555555555443

>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form

Probab=84.78  E-value=5.7  Score=39.45  Aligned_cols=66  Identities=17%  Similarity=0.261  Sum_probs=45.6

Q ss_pred             CceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeec-----CCeeeeEEEEEcCCCCCCCHHHHHHHHHHHHHh
Q 017375          259 EGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATK-----SGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQT  329 (372)
Q Consensus       259 ~~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~-----g~~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~~  329 (372)
                      +...+.|.-+||||.|.+|++.++++|.||.+..-...     -+.+.=.+.+ +..+    .++.++|.+.|.+.
T Consensus       304 r~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~v-et~~----~~~~~~i~~~L~~~  374 (380)
T TIGR01127       304 RKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITL-ETRG----KEHLDEILKILRDM  374 (380)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEE-EeCC----HHHHHHHHHHHHHc
Confidence            34689999999999999999999999999988854311     1233333444 2222    34666777777653

A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.

>PLN02551 aspartokinase

Probab=84.72  E-value=55  Score=34.23  Aligned_cols=139  Identities=14%  Similarity=0.177  Sum_probs=79.7

Q ss_pred             CCeEEEEEEec---CccchHHHHHHHHHhcCceEEEEEEEecCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHhhcC
Q 017375           46 MDHTAIELTGS---DRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKG  122 (372)
Q Consensus        46 ~~~t~i~v~~~---DrpGLl~~i~~~l~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~L~~  122 (372)
                      .+.+.|+|.+.   +.+|.++++...|.++|++|.--  .|. + ..-.|.|...  .  . +  ..+.+++.+.+.+..
T Consensus       364 ~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~I--ssS-e-~sIs~~v~~~--~--~-~--~~~~i~~~l~~l~~e  432 (521)
T PLN02551        364 RNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV--ATS-E-VSISLTLDPS--K--L-W--SRELIQQELDHLVEE  432 (521)
T ss_pred             CCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEE--ecc-C-CEEEEEEehh--H--h-h--hhhhHHHHHHHHHHH
Confidence            34567777655   68999999999999999999854  332 2 2335666431  1  1 0  112333333221111


Q ss_pred             CCCCCcccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCCEEEEEecCCCCeEEEEEEec--CCccHHHHHH
Q 017375          123 SNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSK--DRPKLVFDTV  200 (372)
Q Consensus       123 ~~~~~~~~~~l~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~v~V~~~--DrpGLL~~i~  200 (372)
                       ...                                          ...|.+.    .+...|.|.+.  ..||+++++.
T Consensus       433 -l~~------------------------------------------~~~V~v~----~~vAiISvVG~~~~~~gvaariF  465 (521)
T PLN02551        433 -LEK------------------------------------------IAVVNLL----QGRSIISLIGNVQRSSLILEKVF  465 (521)
T ss_pred             -hhc------------------------------------------CCeEEEe----CCEEEEEEEccCCCCccHHHHHH
Confidence             000                                          0112222    24566777654  6899999999


Q ss_pred             HHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHH
Q 017375          201 CTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAI  253 (372)
Q Consensus       201 ~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L  253 (372)
                      .+|+..|+||..-...+..  .--.|.|.+         +..++..+.|...+
T Consensus       466 ~aLa~~gInV~mIsqgaSe--inIS~vV~~---------~d~~~Av~aLH~~F  507 (521)
T PLN02551        466 RVLRTNGVNVQMISQGASK--VNISLIVND---------DEAEQCVRALHSAF  507 (521)
T ss_pred             HHHHHCCCCeEEEEecCCC--cEEEEEEeH---------HHHHHHHHHHHHHH
Confidence            9999999999864443322  222355532         23455555665554

>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]

Probab=84.66  E-value=5.4  Score=38.06  Aligned_cols=55  Identities=9%  Similarity=0.161  Sum_probs=41.5

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEeeCCCCCC
Q 017375          181 DYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGSPV  236 (372)
Q Consensus       181 ~~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g-~~~~d~F~V~~~~g~~~  236 (372)
                      ..|.+.+..+|+||-|+++-++|+.+|+|...-...-.+ +...-.||| |.+|..-
T Consensus       193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~i-D~eg~~~  248 (279)
T COG0077         193 EKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFI-DIEGHID  248 (279)
T ss_pred             ceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEE-EEecCcC
Confidence            478888888999999999999999999998765554443 334445666 4566653

>PRK11898 prephenate dehydratase; Provisional

Probab=83.71  E-value=5.4  Score=38.17  Aligned_cols=67  Identities=16%  Similarity=0.203  Sum_probs=46.1

Q ss_pred             ceEEEEEeC-CCcchHHHHHHHHHhCCceEEEEEEeecCC-eeeeEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 017375          260 GLKLELCTT-DRVGLLSNVTRIFRENSLTVTRAEVATKSG-KAVNTFYVGGASGYPVDAKIIDSIRQSIGQ  328 (372)
Q Consensus       260 ~t~lev~~~-DrpGlL~~It~~L~~~gi~I~~a~i~T~g~-~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~  328 (372)
                      .|.|-+... |+||-|+++-..|+++|||+.+.+..-... .-+=.||| |.+|..-++ .++.+-+.|.+
T Consensus       196 ktslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~v-d~eg~~~~~-~~~~al~~L~~  264 (283)
T PRK11898        196 KTSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFI-DVEGHIDDV-LVAEALKELEA  264 (283)
T ss_pred             eEEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEE-EEEccCCCH-HHHHHHHHHHH
Confidence            355656664 469999999999999999999999876543 34557888 566754332 34444444443

>PRK08198 threonine dehydratase; Provisional

Probab=83.51  E-value=9.8  Score=38.15  Aligned_cols=37  Identities=16%  Similarity=0.288  Sum_probs=33.0

Q ss_pred             CCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEE
Q 017375          180 KDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANID  216 (372)
Q Consensus       180 ~~~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~  216 (372)
                      .....+.|.-+|+||-|.++...++++|.||.+....
T Consensus       325 gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~  361 (404)
T PRK08198        325 GRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHD  361 (404)
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE
Confidence            4556899999999999999999999999999987665

>PRK09084 aspartate kinase III; Validated

Probab=82.81  E-value=15  Score=37.60  Aligned_cols=114  Identities=12%  Similarity=0.118  Sum_probs=70.2

Q ss_pred             CCeEEEEEEec---CCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhc-
Q 017375          180 KDYSVVTITSK---DRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER-  255 (372)
Q Consensus       180 ~~~t~v~V~~~---DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~-  255 (372)
                      .+...|+|.+.   +.+|.++++..+|+++|++|..-.  +..  .--.|.|...+-  . . .....+.+.+...+.. 
T Consensus       304 ~~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~--sse--~sIs~~i~~~~~--~-~-~~~~~~~~~l~~el~~~  375 (448)
T PRK09084        304 RNQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLIT--TSE--VSVSLTLDTTGS--T-S-TGDTLLTQALLTELSQL  375 (448)
T ss_pred             CCEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEe--ccC--cEEEEEEechhh--h-h-hhhHHHHHHHHHHHhcC
Confidence            45678888754   689999999999999999998764  222  233566653211  0 0 0112233333333432 


Q ss_pred             -c---CCCceEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeE-EEE
Q 017375          256 -R---VSEGLKLELCTT---DRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNT-FYV  306 (372)
Q Consensus       256 -r---~~~~t~lev~~~---DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~-F~v  306 (372)
                       +   .+.-..|.+.|.   ++||++.++..+|++.  +|..   -.+|...... |.|
T Consensus       376 ~~i~~~~~va~IsvvG~gm~~~~gv~arif~aL~~~--nI~~---I~qgsSe~sIS~vV  429 (448)
T PRK09084        376 CRVEVEEGLALVALIGNNLSKACGVAKRVFGVLEPF--NIRM---ICYGASSHNLCFLV  429 (448)
T ss_pred             CeEEEECCeEEEEEECCCcccCcChHHHHHHHHHhC--CeEE---EEEcCCCCcEEEEE
Confidence             1   134577888876   7899999999999874  4433   3344554444 444

>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]

Probab=82.42  E-value=3  Score=38.89  Aligned_cols=36  Identities=11%  Similarity=0.261  Sum_probs=32.5

Q ss_pred             CceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEe
Q 017375          259 EGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVA  294 (372)
Q Consensus       259 ~~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~  294 (372)
                      +.-+|.+-..|-||+|.+|+-+|+..|.||.++-+-
T Consensus        76 krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc  111 (309)
T KOG2663|consen   76 KRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVC  111 (309)
T ss_pred             cceeEEEEecCCchHHHHHHHHHHhccCCchheeee
Confidence            357889999999999999999999999999998764

>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form

Probab=82.14  E-value=10  Score=37.59  Aligned_cols=36  Identities=25%  Similarity=0.339  Sum_probs=31.8

Q ss_pred             CeEEEEEEecCccchHHHHHHHHHhcCceEEEEEEE
Q 017375           47 DHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVW   82 (372)
Q Consensus        47 ~~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~   82 (372)
                      ....+.|..+|+||-|++++..++++|.||.+-.-.
T Consensus       304 r~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~  339 (380)
T TIGR01127       304 RKVRIETVLPDRPGALYHLLESIAEARANIVKIDHD  339 (380)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEee
Confidence            445899999999999999999999999999987543

A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.

>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase)

Probab=81.90  E-value=11  Score=26.59  Aligned_cols=42  Identities=24%  Similarity=0.441  Sum_probs=31.0

Q ss_pred             EEEEe---CCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEc
Q 017375          263 LELCT---TDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGG  308 (372)
Q Consensus       263 lev~~---~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~~  308 (372)
                      |+|.+   .++||+.++|-++|+++|+++....  | ++ ..=.|++..
T Consensus         3 i~i~~~~m~~~~~~~~~if~~l~~~~i~v~~i~--t-~~-~~is~~v~~   47 (62)
T cd04890           3 IEIFDQLMNGEVGFLRKIFEILEKHGISVDLIP--T-SE-NSVTLYLDD   47 (62)
T ss_pred             EEEeccccCcccCHHHHHHHHHHHcCCeEEEEe--c-CC-CEEEEEEeh
Confidence            44543   4779999999999999999999983  3 22 444677743

This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel

>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]

Probab=81.83  E-value=6.8  Score=34.26  Aligned_cols=66  Identities=23%  Similarity=0.332  Sum_probs=45.4

Q ss_pred             eEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEec-CCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHhh
Q 017375           48 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH-NTRAAALMQVTDEETGGAISDPERLSVIKELLCNVL  120 (372)
Q Consensus        48 ~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~-~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~L  120 (372)
                      ...+.+.-.|.||-|+++++.|+..|+||.+-.+.-. +....=+-.|..   |    ++...+.+..+|.+.+
T Consensus         4 ~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~---g----~~~~~EQi~kQL~kLi   70 (163)
T COG0440           4 RRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVS---G----DEQVLEQIIKQLNKLI   70 (163)
T ss_pred             eEEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEc---C----CcchHHHHHHHHHhhc
Confidence            4567888899999999999999999999999887753 333222223333   2    2234566777776543

>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric

Probab=81.66  E-value=4.5  Score=41.21  Aligned_cols=53  Identities=17%  Similarity=0.250  Sum_probs=42.2

Q ss_pred             ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCeee--eEEEEEcCCCCC
Q 017375          260 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAV--NTFYVGGASGYP  313 (372)
Q Consensus       260 ~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~--d~F~v~~~~g~~  313 (372)
                      .|.|-+...|+||-|+++-+.|+++|||+.+.+..-......  =.||| |..|..
T Consensus        31 ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfV-D~Eg~~   85 (464)
T TIGR01270        31 RLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLV-DVELFH   85 (464)
T ss_pred             eEEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEE-EEEcCH
Confidence            467777779999999999999999999999999876655444  47888 445544

This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=81.42  E-value=3.8  Score=42.77  Aligned_cols=49  Identities=16%  Similarity=0.210  Sum_probs=39.3

Q ss_pred             CCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEE
Q 017375          180 KDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE--GPEAYQEYFI  228 (372)
Q Consensus       180 ~~~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~--g~~~~d~F~V  228 (372)
                      ..+..+.+...|+||.+..++..|.++++||...++...  |+.++-++.+
T Consensus       450 ~~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~  500 (526)
T PRK13581        450 PEGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSV  500 (526)
T ss_pred             CCceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEEC
Confidence            344566667799999999999999999999999998763  4677655555

>PRK08818 prephenate dehydrogenase; Provisional

Probab=81.22  E-value=4  Score=40.68  Aligned_cols=48  Identities=8%  Similarity=0.067  Sum_probs=37.0

Q ss_pred             CeEEEEEEec-CCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEe
Q 017375          181 DYSVVTITSK-DRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIR  229 (372)
Q Consensus       181 ~~t~v~V~~~-DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~  229 (372)
                      ..+.+.+.-+ |+||-|+++..+|+.+|+||.+-.+.-...+-.- |+|.
T Consensus       294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~~~r~~~y~-f~i~  342 (370)
T PRK08818        294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSSRTPAGELH-FRIG  342 (370)
T ss_pred             cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEEecccCceEE-EEEE
Confidence            3566777776 9999999999999999999999888333344433 7774

>PRK14640 hypothetical protein; Provisional

Probab=81.12  E-value=20  Score=30.99  Aligned_cols=90  Identities=13%  Similarity=0.132  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhc--cCCCceEEEEEeCCCc
Q 017375          195 LVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER--RVSEGLKLELCTTDRV  271 (372)
Q Consensus       195 LL~~i~~~L~~~glnI~~A~I~T~g-~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~--r~~~~t~lev~~~Drp  271 (372)
                      +...+..++..+|+.+.+..+...+ ++.+ ..+|..++|  ++- +.++.+-+.|..+|+.  -.+..|.|||+++.--
T Consensus         8 i~~li~p~~~~~G~el~dve~~~~~~~~~l-rV~ID~~~g--v~l-ddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl~   83 (152)
T PRK14640          8 LTDLLEAPVVALGFELWGIEFIRAGKHSTL-RVYIDGENG--VSV-ENCAEVSHQVGAIMDVEDPITEEYYLEVSSPGLD   83 (152)
T ss_pred             HHHHHHHHHHhcCCEEEEEEEEecCCCcEE-EEEEECCCC--CCH-HHHHHHHHHHHHHhcccccCCCCeEEEEeCCCCC
Confidence            4456777889999999999998876 4555 444544444  544 5788999999999874  2467899999976443


Q ss_pred             chHHHHHHHHHhCCceE
Q 017375          272 GLLSNVTRIFRENSLTV  288 (372)
Q Consensus       272 GlL~~It~~L~~~gi~I  288 (372)
                      --|...-++-+-.|=.|
T Consensus        84 RpL~~~~~f~r~~G~~v  100 (152)
T PRK14640         84 RPLFKVAQFEKYVGQEA  100 (152)
T ss_pred             CcCCCHHHHHHhCCCeE
Confidence            34666666666666544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	372
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	2e-05
1u8s_A	192	Glycine cleavage system transcriptional repressor,	3e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 2e-05
 Identities = 37/228 (16%), Positives = 77/228 (33%), Gaps = 40/228 (17%)

Query: 101 GAISDPERLSVIKELLCNVLKGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTD 160
              + PE +  + + L   +  +  S    +   +   H+ +   + +   + YE     
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN---- 245

Query: 161 DDSL---DEKQRPNVNVVNCYD---KDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHAN 214
              L      Q  N    N ++   K    + +T++   K V D +   T     + H +
Sbjct: 246 --CLLVLLNVQ--NAKAWNAFNLSCK----ILLTTRF--KQVTDFLSAATTTHISLDHHS 295

Query: 215 IDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQC--LKAAIERRVSEGLKLELCTTDRVG 272
           +     E  +   ++++D    +       V+     + +I   ++E ++  L T D   
Sbjct: 296 MTLTPDEV-KSLLLKYLD---CRPQDLPREVLTTNPRRLSI---IAESIRDGLATWDNWK 348

Query: 273 --LLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKI 318
                 +T I  E+SL V       K    ++ F        P  A I
Sbjct: 349 HVNCDKLTTII-ESSLNVLEPAEYRKMFDRLSVF--------PPSAHI 387

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 37/318 (11%), Positives = 91/318 (28%), Gaps = 76/318 (23%)

Query: 110 SVIKELLCNVLKGSNKSGLAKTEVSQ--DVTHTERRLHQMMFADRDYERTGTD---DDSL 164
           + +    C  ++   KS L+K E+              ++ +     +        ++ L
Sbjct: 28  AFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVL 87

Query: 165 D------------EKQRPNVNV---VNCYDKDYSVVTITSKD---RPKLVF---DTVCTL 203
                        E+++P++     +   D+ Y+   + +K    R +        +  L
Sbjct: 88  RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL 147

Query: 204 TDMQYVVFH----------AN--IDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKA 251
              + V+            A     +   +   ++ I  ++     S      ++Q L  
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207

Query: 252 AIERRVSEGLKLELCTTDRVGLLSN-VTRIFRE----NSLTVTRAEVATKSGKAVNTFYV 306
            I+   +           R+  +   + R+ +     N L V    V     KA N F +
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL-NVQNA--KAWNAFNL 264

Query: 307 GGASGYPV-----DAKIIDSI-------------------RQSIGQTILKVKGNPEDL-K 341
                  +       ++ D +                    +     +  +   P+DL +
Sbjct: 265 SC----KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320

Query: 342 SASQDSPTRF-LFGGLFK 358
                +P R  +     +
Sbjct: 321 EVLTTNPRRLSIIAESIR 338

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A Length = 88

 Score = 41.5 bits (98), Expect = 2e-05
 Identities = 8/68 (11%), Positives = 31/68 (45%), Gaps = 8/68 (11%)

Query: 49  TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPER 108
             I + G D+ G+ ++++ V++    N+ +  +   +      + +        + + ++
Sbjct: 6   AGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIF-------VKNTDK 58

Query: 109 LS-VIKEL 115
           L+ ++ +L
Sbjct: 59  LTTLMDKL 66

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 Length = 192

 Score = 40.5 bits (94), Expect = 3e-04
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 45 SM-DHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEE 98
          S+  H  I   G+DRPG+ +EV  ++T   CN++ + +         LM ++   
Sbjct: 2  SLTQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSP 56

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	372
2nyi_A	195	Unknown protein; protein structure initiative, PSI	99.79
1u8s_A	192	Glycine cleavage system transcriptional repressor,	99.74
2nyi_A	195	Unknown protein; protein structure initiative, PSI	99.72
1u8s_A	192	Glycine cleavage system transcriptional repressor,	99.68
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	98.92
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	98.7
2f06_A	144	Conserved hypothetical protein; structural genomic	98.64
2f06_A	144	Conserved hypothetical protein; structural genomic	98.2
1zpv_A	91	ACT domain protein; structural genomics, PSI, prot	98.14
1zpv_A	91	ACT domain protein; structural genomics, PSI, prot	98.13
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	97.93
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	97.84
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	97.65
3obi_A	288	Formyltetrahydrofolate deformylase; structural gen	97.49
3o1l_A	302	Formyltetrahydrofolate deformylase; structural gen	97.44
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	97.43
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	97.39
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	97.38
3n0v_A	286	Formyltetrahydrofolate deformylase; formyl transfe	97.28
3n0v_A	286	Formyltetrahydrofolate deformylase; formyl transfe	97.24
3nrb_A	287	Formyltetrahydrofolate deformylase; N-terminal ACT	97.22
3lou_A	292	Formyltetrahydrofolate deformylase; structural gen	97.21
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	97.21
3o1l_A	302	Formyltetrahydrofolate deformylase; structural gen	97.17
3obi_A	288	Formyltetrahydrofolate deformylase; structural gen	97.15
3lou_A	292	Formyltetrahydrofolate deformylase; structural gen	97.08
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	97.08
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	97.04
3nrb_A	287	Formyltetrahydrofolate deformylase; N-terminal ACT	96.97
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	96.95
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	96.89
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	96.75
2jhe_A	190	Transcription regulator TYRR; aromatic hydrocarbon	96.72
3s1t_A	181	Aspartokinase; ACT domain, threonine binding, regu	96.65
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	96.59
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	96.58
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	96.2
4go7_X	200	Aspartokinase; transferase; 2.00A {Mycobacterium t	96.2
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	96.02
3s1t_A	181	Aspartokinase; ACT domain, threonine binding, regu	95.96
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	95.86
2jhe_A	190	Transcription regulator TYRR; aromatic hydrocarbon	95.72
1y7p_A	223	Hypothetical protein AF1403; structural genomics,	95.59
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	95.4
1y7p_A	223	Hypothetical protein AF1403; structural genomics,	94.93
4go7_X	200	Aspartokinase; transferase; 2.00A {Mycobacterium t	94.48
3c1m_A	473	Probable aspartokinase; allosteric inhibition, thr	93.87
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	93.47
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	93.37
2qmx_A	283	Prephenate dehydratase; APC86053, L-Phe inhibition	93.07
3c1m_A	473	Probable aspartokinase; allosteric inhibition, thr	92.45
3mwb_A	313	Prephenate dehydratase; L-Phe, PSI, MCSG, structur	91.71
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	91.71
2qmw_A	267	PDT, prephenate dehydratase; APC85812, prephenate	91.62
3luy_A	329	Probable chorismate mutase; structural genomics, A	91.54
3tvi_A	446	Aspartokinase; structural genomics, ACT domains, r	91.23
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	88.52
3tvi_A	446	Aspartokinase; structural genomics, ACT domains, r	87.33
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	86.41
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	85.41
2cdq_A	510	Aspartokinase; aspartate kinase, amino acid metabo	84.85
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	84.21
3mah_A	157	Aspartokinase; aspartate kinase, structural genomi	83.41
2qmx_A	283	Prephenate dehydratase; APC86053, L-Phe inhibition	81.6
3luy_A	329	Probable chorismate mutase; structural genomics, A	80.8

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=99.79  E-value=8.8e-19  Score=157.17  Aligned_cols=144  Identities=14%  Similarity=0.169  Sum_probs=114.7

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhc-----
Q 017375          181 DYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER-----  255 (372)
Q Consensus       181 ~~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~-----  255 (372)
                      ..++|+|+|+|||||++.|+++|+++|+||.+|++++..+.+.-.|.|..+. .  ....+++.|++.|...+.+     
T Consensus         4 ~~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~~~-~--~~~~~~~~l~~~L~~~~~~~~~~~   80 (195)
T 2nyi_A            4 QSFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLNA-K--DGKLIQSALESALPGFQISTRRAS   80 (195)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESS-S--SSHHHHHHHHHHSTTCEEEEEECC
T ss_pred             eEEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEecC-c--cchhHHHHHHHHHHHHHHhcCCeE
Confidence            3579999999999999999999999999999999999877665588886542 1  2223567777777654422     


Q ss_pred             c--------CCCceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecC--CeeeeEEEEEcCCCCCCCHHHHHHHHHH
Q 017375          256 R--------VSEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKS--GKAVNTFYVGGASGYPVDAKIIDSIRQS  325 (372)
Q Consensus       256 r--------~~~~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g--~~~~d~F~v~~~~g~~~~~~~~~~l~~~  325 (372)
                      +        ....++|+|.|+||||++++||++|+++|+||..++..|.+  +++.++||++...+.+ +... +.|+++
T Consensus        81 ~~~~~~~~~~~~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~-~~~~-~~l~~~  158 (195)
T 2nyi_A           81 SVAERHVSPDTREYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFP-FPLY-QEVVTA  158 (195)
T ss_dssp             CC----CCTTEEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEE-GGGH-HHHHHH
T ss_pred             EEEeCCcCCCCcEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcC-CCcc-HHHHHH
Confidence            0        12358999999999999999999999999999999999998  7789999998766544 2335 778887


Q ss_pred             HHHh
Q 017375          326 IGQT  329 (372)
Q Consensus       326 l~~~  329 (372)
                      |...
T Consensus       159 l~~~  162 (195)
T 2nyi_A          159 LSRV  162 (195)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7753

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=99.74  E-value=5.6e-17  Score=144.84  Aligned_cols=139  Identities=17%  Similarity=0.205  Sum_probs=110.5

Q ss_pred             eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhc------
Q 017375          182 YSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER------  255 (372)
Q Consensus       182 ~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~------  255 (372)
                      ..+|+|+|+||||++++++++|+++|+||.++++++..+.+.-.|.|..+      . ..++.|++.|......      
T Consensus         6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~------~-~~~~~l~~~L~~~~~~~~~~~~   78 (192)
T 1u8s_A            6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGS------P-SNITRVETTLPLLGQQHDLITM   78 (192)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEEC------H-HHHHHHHHHHHHHHHHHTCEEE
T ss_pred             EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecC------C-CCHHHHHHHHHHHHHhcCCEEE
Confidence            56899999999999999999999999999999999988877778888643      1 3677888888766531      


Q ss_pred             --cC--------CCceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCC----eeeeEEEEEcCCCCCCCHHHHHH
Q 017375          256 --RV--------SEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSG----KAVNTFYVGGASGYPVDAKIIDS  321 (372)
Q Consensus       256 --r~--------~~~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~----~~~d~F~v~~~~g~~~~~~~~~~  321 (372)
                        +.        ...++|+|.++||||+|++|+++|+++|+||..++..|.++    +..+.||++...+.+- +...+.
T Consensus        79 ~~~~~~~~~~~~~~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~~-~~~~~~  157 (192)
T 1u8s_A           79 MKRTSPHDHQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDS-GCNLMQ  157 (192)
T ss_dssp             EEEECCCCCCCCSEEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECT-TSCHHH
T ss_pred             EEeCCCCCCccCCceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeCCC-CCCHHH
Confidence              11        13589999999999999999999999999999999999985    6899999987654432 224567


Q ss_pred             HHHHHHH
Q 017375          322 IRQSIGQ  328 (372)
Q Consensus       322 l~~~l~~  328 (372)
                      |+++|..
T Consensus       158 l~~~l~~  164 (192)
T 1u8s_A          158 LQEEFDA  164 (192)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7777765

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=99.72  E-value=6e-17  Score=145.21  Aligned_cols=158  Identities=15%  Similarity=0.144  Sum_probs=111.7

Q ss_pred             CeEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEecCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHhhcCCCCC
Q 017375           47 DHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKGSNKS  126 (372)
Q Consensus        47 ~~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~L~~~~~~  126 (372)
                      ..++|+|+|+|||||++.|+++|+++|+||++|++++..+++.-.|.|..+  +.  ..+.+++.|++.|..++.+ ..+
T Consensus         4 ~~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~~--~~--~~~~~~~~l~~~L~~~~~~-~~~   78 (195)
T 2nyi_A            4 QSFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLN--AK--DGKLIQSALESALPGFQIS-TRR   78 (195)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES--SS--SSHHHHHHHHHHSTTCEEE-EEE
T ss_pred             eEEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEec--Cc--cchhHHHHHHHHHHHHHHh-cCC
Confidence            467999999999999999999999999999999999987777668888752  22  2334566666666543321 101


Q ss_pred             CcccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHhC
Q 017375          127 GLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDM  206 (372)
Q Consensus       127 ~~~~~~l~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~v~V~~~DrpGLL~~i~~~L~~~  206 (372)
                           .         .+++                   .   .+    . ......++|+|.|+|||||++.|+++|+++
T Consensus        79 -----~---------~~~~-------------------~---~~----~-~~~~~~~iltv~g~DrpGiva~Vt~~La~~  117 (195)
T 2nyi_A           79 -----A---------SSVA-------------------E---RH----V-SPDTREYELYVEGPDSEGIVEAVTAVLAKK  117 (195)
T ss_dssp             -----C---------CCC------------------------------C-CTTEEEEEEEEEEECCTTHHHHHHHHHHHT
T ss_pred             -----e---------EEEE-------------------e---CC----c-CCCCcEEEEEEEeCCCcCHHHHHHHHHHHc
Confidence                 0         0000                   0   01    0 233456899999999999999999999999


Q ss_pred             CceEEEEEEEeeC--CeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHH
Q 017375          207 QYVVFHANIDAEG--PEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAI  253 (372)
Q Consensus       207 glnI~~A~I~T~g--~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L  253 (372)
                      |+||.++++.|.+  ....+.|+++..-+.+ .. .. +.|++.|....
T Consensus       118 g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~-~~-~~-~~l~~~l~~~a  163 (195)
T 2nyi_A          118 GANIVELETETLPAPFAGFTLFRMGSRVAFP-FP-LY-QEVVTALSRVE  163 (195)
T ss_dssp             TCEEEEEEEEEEECSSTTCEEEEEEEEEEEE-GG-GH-HHHHHHHHHHH
T ss_pred             CCCEEEceeeecccccCCCCeEEEEEEEEcC-CC-cc-HHHHHHHHHHH
Confidence            9999999999987  4556777775443322 12 24 67777776554

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=99.68  E-value=1e-15  Score=136.65  Aligned_cols=158  Identities=16%  Similarity=0.197  Sum_probs=112.1

Q ss_pred             CeEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEecCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHhhcCCCCC
Q 017375           47 DHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKGSNKS  126 (372)
Q Consensus        47 ~~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~L~~~~~~  126 (372)
                      ....|+|+|+||||++++++++|+++|+||.++++++..+...-.|.|..+        +..++.|++.|.+.+ ++..+
T Consensus         5 ~~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~--------~~~~~~l~~~L~~~~-~~~~~   75 (192)
T 1u8s_A            5 QHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGS--------PSNITRVETTLPLLG-QQHDL   75 (192)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEEC--------HHHHHHHHHHHHHHH-HHHTC
T ss_pred             cEEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecC--------CCCHHHHHHHHHHHH-HhcCC
Confidence            457899999999999999999999999999999999988877778888652        135678888888655 32222


Q ss_pred             CcccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHhC
Q 017375          127 GLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDM  206 (372)
Q Consensus       127 ~~~~~~l~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~v~V~~~DrpGLL~~i~~~L~~~  206 (372)
                         ...+        ++.        .              .++     +......++|+|.|+||||++++|+++|+++
T Consensus        76 ---~~~~--------~~~--------~--------------~~~-----~~~~~~~~~l~v~~~D~~Gil~~v~~~l~~~  117 (192)
T 1u8s_A           76 ---ITMM--------KRT--------S--------------PHD-----HQTHAYTVEVYVESDDKLGLTEKFTQFFAQR  117 (192)
T ss_dssp             ---EEEE--------EEE--------C--------------CCC-----CCCCSEEEEEEEEESCCTTHHHHHHHHHHHT
T ss_pred             ---EEEE--------EeC--------C--------------CCC-----CccCCceEEEEEEeCCCccHHHHHHHHHHHc
Confidence               1111        000        0              001     1234456799999999999999999999999


Q ss_pred             CceEEEEEEEeeCC----eEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHH
Q 017375          207 QYVVFHANIDAEGP----EAYQEYFIRHIDGSPVKSDAERERVIQCLKAAI  253 (372)
Q Consensus       207 glnI~~A~I~T~g~----~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L  253 (372)
                      |+||.+++..|.+.    ...+.|+++..-+.+ .. ...+.|++.|....
T Consensus       118 ~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~-~~-~~~~~l~~~l~~~~  166 (192)
T 1u8s_A          118 QIGMASLSAQTISKDKLHSEQNQFHIAISARVD-SG-CNLMQLQEEFDALC  166 (192)
T ss_dssp             TCCEEEEEEEEEC--------CEEEEEEEEEEC-TT-SCHHHHHHHHHHHH
T ss_pred             CCcHHHhhhhcccCCccCCCCCEEEEEEEEeCC-CC-CCHHHHHHHHHHHH
Confidence            99999999999873    456777775432221 11 13466777776544

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=98.92  E-value=5.3e-08  Score=96.26  Aligned_cols=122  Identities=9%  Similarity=0.022  Sum_probs=91.8

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhc-----
Q 017375          181 DYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER-----  255 (372)
Q Consensus       181 ~~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~-----  255 (372)
                      ...+|+|.|+||||+.+.|+++|+++|+||.+...++.++.+.-...+.-+.. ..    ..+.|++.|...-..     
T Consensus        11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~~~-~~----~~~~l~~~l~~~~~~~~~~~   85 (415)
T 3p96_A           11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCPAD-VA----DGPALRHDVEAAIRKVGLDV   85 (415)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEECHH-HH----TSHHHHHHHHHHHHHTTCEE
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEecCC-cC----CHHHHHHHHHHHHHHcCeEE
Confidence            45799999999999999999999999999999999998887765555542211 00    125666666543221     


Q ss_pred             ---------cC--CCceEEEEEeCC-CcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEE
Q 017375          256 ---------RV--SEGLKLELCTTD-RVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVG  307 (372)
Q Consensus       256 ---------r~--~~~t~lev~~~D-rpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~  307 (372)
                               +.  ..++.+++.+.| +||++.+|+.+|+++|+||..++.-+......-.|++.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~~~~~~~~~~~v~  149 (415)
T 3p96_A           86 SIERSDDVPIIREPSTHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSDYPVIGLELRVS  149 (415)
T ss_dssp             EEEECSSSCSSCCCCSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEESSSSEEEEEEEE
T ss_pred             EEEECCcccccCCCCcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeeccCCCceEEEEEee
Confidence                     11  236899999999 99999999999999999999988877433333347774

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=98.70  E-value=3.7e-07  Score=90.21  Aligned_cols=138  Identities=10%  Similarity=0.055  Sum_probs=95.2

Q ss_pred             CeEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEecCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHhhcCCCCC
Q 017375           47 DHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKGSNKS  126 (372)
Q Consensus        47 ~~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~L~~~~~~  126 (372)
                      ....|+|.|+||||+.+.++++|+++|+||.+...++.+|++.-...+.-+  +...    ..+.|++.|.. +..+..+
T Consensus        11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~--~~~~----~~~~l~~~l~~-~~~~~~~   83 (415)
T 3p96_A           11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCP--ADVA----DGPALRHDVEA-AIRKVGL   83 (415)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEEC--HHHH----TSHHHHHHHHH-HHHHTTC
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEec--CCcC----CHHHHHHHHHH-HHHHcCe
Confidence            467899999999999999999999999999999999988877665555431  1100    12567777764 3333322


Q ss_pred             CcccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCCEEEEEecCCCCeEEEEEEecC-CccHHHHHHHHHHh
Q 017375          127 GLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKD-RPKLVFDTVCTLTD  205 (372)
Q Consensus       127 ~~~~~~l~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~v~V~~~D-rpGLL~~i~~~L~~  205 (372)
                         .-.+           +       ...            ..+++     ....+..+++.++| ++|++.+++.++++
T Consensus        84 ---~~~~-----------~-------~~~------------~~~~~-----~~~~~~~~~llg~~~~~~~~~~i~~~l~~  125 (415)
T 3p96_A           84 ---DVSI-----------E-------RSD------------DVPII-----REPSTHTIFVLGRPITAAAFGAVAREVAA  125 (415)
T ss_dssp             ---EEEE-----------E-------ECS------------SSCSS-----CCCCSEEEEEEESSCCHHHHHHHHHHHHH
T ss_pred             ---EEEE-----------E-------ECC------------ccccc-----CCCCcEEEEEEeCCCCHHHHHHHHHHHHH
Confidence               1111           1       000            00000     12346689999999 99999999999999


Q ss_pred             CCceEEEEEEEeeCCeEEEEEEEe
Q 017375          206 MQYVVFHANIDAEGPEAYQEYFIR  229 (372)
Q Consensus       206 ~glnI~~A~I~T~g~~~~d~F~V~  229 (372)
                      +|+||......+....+.-.|++.
T Consensus       126 ~~~Ni~~l~~~~~~~~~~~~~~v~  149 (415)
T 3p96_A          126 LGVNIDLIRGVSDYPVIGLELRVS  149 (415)
T ss_dssp             TTCEEEEEEEEESSSSEEEEEEEE
T ss_pred             cCCCccceeeccCCCceEEEEEee
Confidence            999999888877544444446664

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=98.64  E-value=7.4e-07  Score=75.12  Aligned_cols=112  Identities=9%  Similarity=0.040  Sum_probs=75.0

Q ss_pred             EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhccCCCceE
Q 017375          183 SVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRVSEGLK  262 (372)
Q Consensus       183 t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~r~~~~t~  262 (372)
                      ..++|..+|+||.++++++.|++.|+||..-.+....+...-.|.+.        +.   +..++.|... .-......+
T Consensus         7 ~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~~~~~~~--------d~---~~a~~~L~~~-G~~v~~~sv   74 (144)
T 2f06_A            7 KQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVS--------DP---DKAYKALKDN-HFAVNITDV   74 (144)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEES--------CH---HHHHHHHHHT-TCCEEEEEE
T ss_pred             EEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEeC--------CH---HHHHHHHHHc-CCeEeeeeE
Confidence            47888999999999999999999999999877754333222223321        22   2333333321 111112346


Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEE
Q 017375          263 LELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYV  306 (372)
Q Consensus       263 lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v  306 (372)
                      +-+..+|+||.+++|+++|++.|+||.+......+.+..-.|-+
T Consensus        75 v~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~  118 (144)
T 2f06_A           75 VGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRP  118 (144)
T ss_dssp             EEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEE
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEe
Confidence            77788999999999999999999999877655334444444433

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=98.20  E-value=8.1e-05  Score=62.42  Aligned_cols=113  Identities=17%  Similarity=0.066  Sum_probs=74.5

Q ss_pred             eEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEecCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHhhcCCCCCC
Q 017375           48 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKGSNKSG  127 (372)
Q Consensus        48 ~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~L~~~~~~~  127 (372)
                      ...|+|..+|+||.++++++.|+++|+||..-.+....+...-.|.+.         +++   +.++.|.+.  + ..  
T Consensus         6 ~~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~~~~~~~---------d~~---~a~~~L~~~--G-~~--   68 (144)
T 2f06_A            6 AKQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVS---------DPD---KAYKALKDN--H-FA--   68 (144)
T ss_dssp             EEEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEES---------CHH---HHHHHHHHT--T-CC--
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEeC---------CHH---HHHHHHHHc--C-Ce--
Confidence            357888999999999999999999999999877654322222223322         232   333334321  1 00  


Q ss_pred             cccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHhCC
Q 017375          128 LAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKDRPKLVFDTVCTLTDMQ  207 (372)
Q Consensus       128 ~~~~~l~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~v~V~~~DrpGLL~~i~~~L~~~g  207 (372)
                           .                                    .          ...++.+..+|+||.+++++++|+++|
T Consensus        69 -----v------------------------------------~----------~~svv~v~~~d~pGvla~i~~~L~~~~   97 (144)
T 2f06_A           69 -----V------------------------------------N----------ITDVVGISCPNVPGALAKVLGFLSAEG   97 (144)
T ss_dssp             -----E------------------------------------E----------EEEEEEEEEESSTTHHHHHHHHHHHTT
T ss_pred             -----E------------------------------------e----------eeeEEEEEeCCCCcHHHHHHHHHHHCC
Confidence                 0                                    0          014677788999999999999999999


Q ss_pred             ceEEEEEEEeeCCeEEEEEEE
Q 017375          208 YVVFHANIDAEGPEAYQEYFI  228 (372)
Q Consensus       208 lnI~~A~I~T~g~~~~d~F~V  228 (372)
                      +||.....+..++...-.|.+
T Consensus        98 InI~~~~~~~~~~~~~~~i~~  118 (144)
T 2f06_A           98 VFIEYMYSFANNNVANVVIRP  118 (144)
T ss_dssp             CCEEEEEEEEETTEEEEEEEE
T ss_pred             CCEEEEEEEccCCcEEEEEEe
Confidence            999776665334444433433

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7

Probab=98.14  E-value=1e-05  Score=62.27  Aligned_cols=66  Identities=14%  Similarity=0.237  Sum_probs=51.5

Q ss_pred             CeEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEecCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHh
Q 017375           47 DHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNV  119 (372)
Q Consensus        47 ~~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~  119 (372)
                      ....|+|.++||||++++|+++|+++|+||.+....+.++.+.-.+.+.-+  +.     ..++.|.+.|.+.
T Consensus         4 ~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~--~~-----~~l~~l~~~L~~~   69 (91)
T 1zpv_A            4 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSD--EK-----QDFTYLRNEFEAF   69 (91)
T ss_dssp             EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES--SC-----CCHHHHHHHHHHH
T ss_pred             ceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeC--CC-----CCHHHHHHHHHHH
Confidence            457899999999999999999999999999999999877766666666432  21     1246777777653

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7

Probab=98.13  E-value=2e-05  Score=60.67  Aligned_cols=65  Identities=8%  Similarity=0.047  Sum_probs=51.0

Q ss_pred             eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHH
Q 017375          182 YSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAA  252 (372)
Q Consensus       182 ~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~  252 (372)
                      ...|+|.++||||++++|+++|+++|+||.+....+..+.+.-.+.+.-++  .    ..++.|.+.|...
T Consensus         5 ~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~~--~----~~l~~l~~~L~~~   69 (91)
T 1zpv_A            5 KAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDE--K----QDFTYLRNEFEAF   69 (91)
T ss_dssp             EEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESS--C----CCHHHHHHHHHHH
T ss_pred             eEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeCC--C----CCHHHHHHHHHHH
Confidence            468999999999999999999999999999999998877777666664322  1    1346666666544

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A

Probab=97.93  E-value=4.5e-05  Score=58.01  Aligned_cols=64  Identities=8%  Similarity=0.173  Sum_probs=49.6

Q ss_pred             ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 017375          260 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQ  328 (372)
Q Consensus       260 ~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~  328 (372)
                      .+.|.|.+.||||+|++|+++|++.|+||.++.+.+.++.+...|.+.-.     +.+.++++.++|..
T Consensus         5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~-----~~~~l~~l~~~L~~   68 (88)
T 2ko1_A            5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVK-----NTDKLTTLMDKLRK   68 (88)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEES-----SHHHHHHHHHHHTT
T ss_pred             EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEEC-----CHHHHHHHHHHHhc
Confidence            47889999999999999999999999999999998876555555555321     23466777777654

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A

Probab=97.84  E-value=8.9e-05  Score=56.28  Aligned_cols=48  Identities=13%  Similarity=0.322  Sum_probs=40.6

Q ss_pred             eEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEecCCceEEEEEEe
Q 017375           48 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVT   95 (372)
Q Consensus        48 ~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~~~~~d~F~V~   95 (372)
                      .+.|.|.+.||||+|++|+++|++.|+||.+..+.+.++.+...|.+.
T Consensus         5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~   52 (88)
T 2ko1_A            5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIF   52 (88)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEE
T ss_pred             EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEE
Confidence            467889999999999999999999999999999988665545556554

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=97.65  E-value=0.00033  Score=60.36  Aligned_cols=103  Identities=11%  Similarity=0.176  Sum_probs=72.4

Q ss_pred             CeEEEEEE-ecCCccHHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHH---Hhc
Q 017375          181 DYSVVTIT-SKDRPKLVFDTVCTLTDMQYVVFHANIDAE-GPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAA---IER  255 (372)
Q Consensus       181 ~~t~v~V~-~~DrpGLL~~i~~~L~~~glnI~~A~I~T~-g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~---L~~  255 (372)
                      +.+.|+|. .+|+||.++++..+|+++|+||..-..... ++...-.|.|...         ..++..+.|.+.   +.-
T Consensus        24 ~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v~~~---------~~~~a~~~l~~~~~~l~~   94 (167)
T 2re1_A           24 NQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVPRG---------DYKQTLEILSERQDSIGA   94 (167)
T ss_dssp             CCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEECGG---------GHHHHHHHHHHSSTTTTC
T ss_pred             CEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEEech---------HHHHHHHHHHHHHHHcCC
Confidence            56788888 499999999999999999999987654322 2444455777431         123333333332   111


Q ss_pred             c----CCCceEEEEEeCC---CcchHHHHHHHHHhCCceEEEEE
Q 017375          256 R----VSEGLKLELCTTD---RVGLLSNVTRIFRENSLTVTRAE  292 (372)
Q Consensus       256 r----~~~~t~lev~~~D---rpGlL~~It~~L~~~gi~I~~a~  292 (372)
                      .    ....+.+.|.+.+   +||+++++.++|++.||+|....
T Consensus        95 ~~i~~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~is  138 (167)
T 2re1_A           95 ASIDGDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMIS  138 (167)
T ss_dssp             SEEEEESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEE
T ss_pred             ceEEecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEE
Confidence            0    1235889999887   99999999999999999999943

>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}

Probab=97.49  E-value=0.0046  Score=58.00  Aligned_cols=109  Identities=11%  Similarity=0.106  Sum_probs=69.1

Q ss_pred             eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhc----
Q 017375          182 YSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE--GPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER----  255 (372)
Q Consensus       182 ~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~--g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~----  255 (372)
                      ..+|+|.|+||||+++.|+++|+++|+||.+.+.++.  .+++.-...+.-+.+ ..    ..+.|++.|...-.+    
T Consensus         6 ~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~-~~----~~~~L~~~f~~la~~~~m~   80 (288)
T 3obi_A            6 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAK-VI----PLASLRTGFGVIAAKFTMG   80 (288)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSC-CC----CHHHHHHHHHHHHHHTTCE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCC-CC----CHHHHHHHHHHHHHHcCCE
Confidence            4689999999999999999999999999999999854  366554444432222 11    235666666543221    


Q ss_pred             ----cCCCceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEee
Q 017375          256 ----RVSEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVAT  295 (372)
Q Consensus       256 ----r~~~~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T  295 (372)
                          .......|-|-.-.+---|.+|-.....-.++++-+-+-+
T Consensus        81 ~~l~~~~~~~ri~vl~Sg~g~nl~~ll~~~~~g~l~~~i~~Vis  124 (288)
T 3obi_A           81 WHMRDRETRRKVMLLVSQSDHCLADILYRWRVGDLHMIPTAIVS  124 (288)
T ss_dssp             EEEEETTSCEEEEEEECSCCHHHHHHHHHHHTTSSCEEEEEEEE
T ss_pred             EEeeccCCCcEEEEEEcCCCCCHHHHHHHHHCCCCCeEEEEEEc
Confidence                1223334444444444477788877777666554433333

>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}

Probab=97.44  E-value=0.0036  Score=59.11  Aligned_cols=109  Identities=14%  Similarity=0.109  Sum_probs=65.6

Q ss_pred             eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhc----
Q 017375          182 YSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE--GPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER----  255 (372)
Q Consensus       182 ~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~--g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~----  255 (372)
                      ..+++|.|+||||+.+.|+++|+++|+||.++..++.  .+++.-...+.-+.+ ..    ..+.|++.|...-++    
T Consensus        22 ~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~~~-~~----~~~~L~~~l~~la~~l~m~   96 (302)
T 3o1l_A           22 TFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRADTL-PF----DLDGFREAFTPIAEEFSMD   96 (302)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGGGS-SS----CHHHHHHHHHHHHHHHTCE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecCCC-CC----CHHHHHHHHHHHHHHhCCe
Confidence            4689999999999999999999999999999999976  466554444432211 11    235666666433221    


Q ss_pred             ---c-CCCceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEee
Q 017375          256 ---R-VSEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVAT  295 (372)
Q Consensus       256 ---r-~~~~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T  295 (372)
                         + ..+...|-|-+-.+---|.++-.....-.++.+-+-+-+
T Consensus        97 ~~l~~~~~~~ri~vl~Sg~g~nl~~ll~~~~~g~l~~~I~~Vis  140 (302)
T 3o1l_A           97 WRITDSAQKKRVVLMASRESHCLADLLHRWHSDELDCDIACVIS  140 (302)
T ss_dssp             EEEEETTSCCEEEEEECSCCHHHHHHHHHHHTTCSCSEEEEEEE
T ss_pred             eeecccCCCcEEEEEEeCCchhHHHHHHHHHCCCCCcEEEEEEE
Confidence               1 122223333333333356777776666555443333333

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=97.43  E-value=0.0012  Score=57.54  Aligned_cols=104  Identities=13%  Similarity=0.146  Sum_probs=72.2

Q ss_pred             CCeEEEEEE-ecCCccHHHHHHHHHHhCCceEEEEEEEee---CCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhc
Q 017375          180 KDYSVVTIT-SKDRPKLVFDTVCTLTDMQYVVFHANIDAE---GPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER  255 (372)
Q Consensus       180 ~~~t~v~V~-~~DrpGLL~~i~~~L~~~glnI~~A~I~T~---g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~  255 (372)
                      .+.+.|+|. .+|+||.++++.+.|+++|+||..-...+.   ++...-.|.+..         +..++..+.|.+....
T Consensus        13 ~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~---------~d~~~a~~~l~~~~~~   83 (178)
T 2dtj_A           13 KSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPR---------SDGRRAMEILKKLQVQ   83 (178)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEH---------HHHHHHHHHHHTTTTT
T ss_pred             CCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEcc---------ccHHHHHHHHHHHHHh
Confidence            356788884 699999999999999999999987666544   223333466643         1233344444432111


Q ss_pred             ---c----CCCceEEEEEeC---CCcchHHHHHHHHHhCCceEEEEE
Q 017375          256 ---R----VSEGLKLELCTT---DRVGLLSNVTRIFRENSLTVTRAE  292 (372)
Q Consensus       256 ---r----~~~~t~lev~~~---DrpGlL~~It~~L~~~gi~I~~a~  292 (372)
                         .    .+....|.|.|.   ++||+++++.++|++.||||....
T Consensus        84 ~~~~~v~~~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~is  130 (178)
T 2dtj_A           84 GNWTNVLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS  130 (178)
T ss_dssp             TTCSEEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred             cCCCeEEEeCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEE
Confidence               1    123477788876   899999999999999999999853

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=97.39  E-value=0.0013  Score=56.43  Aligned_cols=118  Identities=8%  Similarity=0.054  Sum_probs=76.8

Q ss_pred             CCeEEEEEEe-cCCccHHHHHHHHHHhCCceEEEEEEEee---CCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhc
Q 017375          180 KDYSVVTITS-KDRPKLVFDTVCTLTDMQYVVFHANIDAE---GPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER  255 (372)
Q Consensus       180 ~~~t~v~V~~-~DrpGLL~~i~~~L~~~glnI~~A~I~T~---g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~  255 (372)
                      .+.+.|+|.+ +|+||.++++.++|++.|+||..-.....   .|...-.|.|...      +.++..++.+.+...+.-
T Consensus        14 ~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~------d~~~a~~~L~~~~~~~~~   87 (167)
T 2dt9_A           14 LDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKD------FAQEALEALEPVLAEIGG   87 (167)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGG------GHHHHHHHHHHHHHHHCC
T ss_pred             CCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehH------HHHHHHHHHHHHHHHhCC
Confidence            3567888876 89999999999999999999987544322   2344556777532      111222222223333321


Q ss_pred             c---CCCceEEEEEeCC---CcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEE
Q 017375          256 R---VSEGLKLELCTTD---RVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVG  307 (372)
Q Consensus       256 r---~~~~t~lev~~~D---rpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~  307 (372)
                      .   .+....+.|.|.+   +||+++++.++|++.||||....  |. + ..=.|.|.
T Consensus        88 ~v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is--~S-e-~~is~vv~  141 (167)
T 2dt9_A           88 EAILRPDIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIA--TS-E-VRISVIIP  141 (167)
T ss_dssp             EEEEECSEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEE--EC-S-SEEEEEEE
T ss_pred             cEEEeCCEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEE--cc-C-CEEEEEEe
Confidence            1   1234678888886   99999999999999999996553  33 2 24455553

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=97.38  E-value=0.0091  Score=51.16  Aligned_cols=111  Identities=12%  Similarity=0.085  Sum_probs=74.5

Q ss_pred             CCCeEEEEEE-ecCccchHHHHHHHHHhcCceEEEEEEEe-cCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHhhcC
Q 017375           45 SMDHTAIELT-GSDRPGLLSEVSAVLTHLKCNVVSAEVWT-HNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKG  122 (372)
Q Consensus        45 ~~~~t~i~v~-~~DrpGLl~~i~~~l~~~glnI~~A~I~T-~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~L~~  122 (372)
                      ..+...|+|. .+|+||.++++..+|+++|+||.--.... .+|...-.|.|...       +.   ++..+.|.+ +..
T Consensus        22 ~~~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v~~~-------~~---~~a~~~l~~-~~~   90 (167)
T 2re1_A           22 DKNQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVPRG-------DY---KQTLEILSE-RQD   90 (167)
T ss_dssp             ECCCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEECGG-------GH---HHHHHHHHH-SST
T ss_pred             cCCEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEEech-------HH---HHHHHHHHH-HHH
Confidence            4567888888 49999999999999999999998544332 23433446777531       22   233333433 211


Q ss_pred             CCCCCcccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCCEEEEEecCCCCeEEEEEEecC---CccHHHHH
Q 017375          123 SNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKD---RPKLVFDT  199 (372)
Q Consensus       123 ~~~~~~~~~~l~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~v~V~~~D---rpGLL~~i  199 (372)
                      +...                                           ..|.+.    .+...|.|.+.+   +||.++++
T Consensus        91 ~l~~-------------------------------------------~~i~~~----~~~a~vsvvG~~m~~~~Gv~a~i  123 (167)
T 2re1_A           91 SIGA-------------------------------------------ASIDGD----DTVCKVSAVGLGMRSHVGVAAKI  123 (167)
T ss_dssp             TTTC-------------------------------------------SEEEEE----SSEEEEEEECSSCTTCCCHHHHH
T ss_pred             HcCC-------------------------------------------ceEEec----CCEEEEEEECCCcCCCcCHHHHH
Confidence            1100                                           123332    357899999877   99999999


Q ss_pred             HHHHHhCCceEEEE
Q 017375          200 VCTLTDMQYVVFHA  213 (372)
Q Consensus       200 ~~~L~~~glnI~~A  213 (372)
                      ..+|++.|+||..-
T Consensus       124 ~~aL~~~~InI~~i  137 (167)
T 2re1_A          124 FRTLAEEGINIQMI  137 (167)
T ss_dssp             HHHHHHTTCCCCEE
T ss_pred             HHHHHHCCCcEEEE
Confidence            99999999999883

>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}

Probab=97.28  E-value=0.0086  Score=56.08  Aligned_cols=106  Identities=11%  Similarity=-0.017  Sum_probs=64.6

Q ss_pred             eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhc----
Q 017375          182 YSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEG--PEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER----  255 (372)
Q Consensus       182 ~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g--~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~----  255 (372)
                      ..+|+|.|+||||+++.|+++|+++|+||.+.+.++..  +++.-...+.-+ + ..    ..+.|++.+...-.+    
T Consensus         8 ~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~-~-~~----~~~~L~~~f~~la~~l~m~   81 (286)
T 3n0v_A            8 TWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQP-D-DF----DEAGFRAGLAERSEAFGMA   81 (286)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECC-S-SC----CHHHHHHHHHHHHGGGTCE
T ss_pred             cEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecC-C-CC----CHHHHHHHHHHHHHHcCCE
Confidence            46899999999999999999999999999999998643  555444434322 1 11    246677776544321    


Q ss_pred             ----cCCCceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEE
Q 017375          256 ----RVSEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEV  293 (372)
Q Consensus       256 ----r~~~~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i  293 (372)
                          .......|-|-+-.+---|.++-.....-.++++-+-+
T Consensus        82 ~~l~~~~~~~ri~vl~Sg~g~~l~~ll~~~~~g~l~~~i~~V  123 (286)
T 3n0v_A           82 FELTAPNHRPKVVIMVSKADHCLNDLLYRQRIGQLGMDVVAV  123 (286)
T ss_dssp             EEEECTTCCCEEEEEESSCCHHHHHHHHHHHTTSSCCEEEEE
T ss_pred             EEeecCCCCcEEEEEEeCCCCCHHHHHHHHHCCCCCcEEEEE
Confidence                11222233333333333666666666655554433333

>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}

Probab=97.24  E-value=0.00028  Score=66.28  Aligned_cols=67  Identities=16%  Similarity=0.147  Sum_probs=47.2

Q ss_pred             CceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 017375          259 EGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQ  328 (372)
Q Consensus       259 ~~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~  328 (372)
                      ..++|+|.|+||||+++.||++|+++|+||..+.-.+.  ...+.|+.+-....+- ....++|+++|..
T Consensus         7 ~~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d--~~~g~Ffmr~~~~~~~-~~~~~~L~~~f~~   73 (286)
T 3n0v_A            7 DTWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDD--RQSGRFFIRVEFRQPD-DFDEAGFRAGLAE   73 (286)
T ss_dssp             CCEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEE--TTTTEEEEEEEEECCS-SCCHHHHHHHHHH
T ss_pred             CcEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeecc--CCCCeeEEEEEEecCC-CCCHHHHHHHHHH
Confidence            35789999999999999999999999999999887653  3445676643211111 1124666666643

>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}

Probab=97.22  E-value=0.011  Score=55.50  Aligned_cols=108  Identities=10%  Similarity=0.108  Sum_probs=65.8

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhc---
Q 017375          181 DYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE--GPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER---  255 (372)
Q Consensus       181 ~~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~--g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~---  255 (372)
                      ...+|+|.|+||||+.+.|+++|+++|+||.++..++.  .+++.-...+.- .+  .    ..+.|++.|...-.+   
T Consensus         6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~-~~--~----~~~~L~~~f~~la~~~~m   78 (287)
T 3nrb_A            6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEI-PV--A----GVNDFNSAFGKVVEKYNA   78 (287)
T ss_dssp             TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEEC-CC---------CHHHHHHHHHHGGGTC
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEc-CC--C----CHHHHHHHHHHHHHHcCC
Confidence            35689999999999999999999999999999999854  355543333321 11  1    123566666543221   


Q ss_pred             -----cCCCceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEee
Q 017375          256 -----RVSEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVAT  295 (372)
Q Consensus       256 -----r~~~~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T  295 (372)
                           ...+...|-|-.-.+---|.+|-.....-.+++.-+-+-+
T Consensus        79 ~~~l~~~~~~~ri~vl~Sg~g~nl~~ll~~~~~g~l~~~i~~Vis  123 (287)
T 3nrb_A           79 EWWFRPRTDRKKVVIMVSKFDHCLGDLLYRHRLGELDMEVVGIIS  123 (287)
T ss_dssp             EEEEEETTCCCEEEEEECSCCHHHHHHHHHHHHTSSCCEEEEEEE
T ss_pred             eeEeeccCCCcEEEEEEeCCCcCHHHHHHHHHCCCCCeEEEEEEe
Confidence                 1122333333333333467777777776666544333333

>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}

Probab=97.21  E-value=0.0003  Score=66.22  Aligned_cols=48  Identities=17%  Similarity=0.239  Sum_probs=39.7

Q ss_pred             CceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEc
Q 017375          259 EGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGG  308 (372)
Q Consensus       259 ~~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~~  308 (372)
                      ..++|++.|+||||+++.||++|+++|+||..+.-.+.  ...+.|+.+-
T Consensus         9 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d--~~~g~Ffmr~   56 (292)
T 3lou_A            9 HQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDD--DLSARFFVRC   56 (292)
T ss_dssp             CEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEE--TTTTEEEEEE
T ss_pred             CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEec--CCCCceEEEE
Confidence            35789999999999999999999999999999887653  3445676643

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=97.21  E-value=0.027  Score=48.74  Aligned_cols=139  Identities=14%  Similarity=0.141  Sum_probs=85.6

Q ss_pred             CCCeEEEEEE-ecCccchHHHHHHHHHhcCceEEEEEEEec---CCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHhh
Q 017375           45 SMDHTAIELT-GSDRPGLLSEVSAVLTHLKCNVVSAEVWTH---NTRAAALMQVTDEETGGAISDPERLSVIKELLCNVL  120 (372)
Q Consensus        45 ~~~~t~i~v~-~~DrpGLl~~i~~~l~~~glnI~~A~I~T~---~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~L  120 (372)
                      ..+.+.|+|. .+|+||.+++|...|+++|+||.--...+.   ++...-.|.|..          +..++..+.|.+ +
T Consensus        12 ~~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~----------~d~~~a~~~l~~-~   80 (178)
T 2dtj_A           12 DKSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPR----------SDGRRAMEILKK-L   80 (178)
T ss_dssp             ECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEH----------HHHHHHHHHHHT-T
T ss_pred             cCCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEcc----------ccHHHHHHHHHH-H
Confidence            4567888884 699999999999999999999985544433   223333466653          111233333332 1


Q ss_pred             cCCCCCCcccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCCEEEEEecCCCCeEEEEEEec---CCccHHH
Q 017375          121 KGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSK---DRPKLVF  197 (372)
Q Consensus       121 ~~~~~~~~~~~~l~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~v~V~~~---DrpGLL~  197 (372)
                      ..+..                                           ...|.+.    .+...|.|.+.   ++||+++
T Consensus        81 ~~~~~-------------------------------------------~~~v~~~----~~~a~VsvVG~gm~~~~Gv~a  113 (178)
T 2dtj_A           81 QVQGN-------------------------------------------WTNVLYD----DQVGKVSLVGAGMKSHPGVTA  113 (178)
T ss_dssp             TTTTT-------------------------------------------CSEEEEE----SCEEEEEEEEECCTTCHHHHH
T ss_pred             HHhcC-------------------------------------------CCeEEEe----CCeEEEEEEcCCcccCccHHH
Confidence            11110                                           0123332    35678888876   8999999


Q ss_pred             HHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHh
Q 017375          198 DTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIE  254 (372)
Q Consensus       198 ~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~  254 (372)
                      ++.++|++.|+||..-  .|..-..  .|.|..         +..++..+.|.+.+.
T Consensus       114 rif~aLa~~~InI~~i--stSe~~I--s~vV~~---------~d~~~Av~~Lh~~F~  157 (178)
T 2dtj_A          114 EFMEALRDVNVNIELI--STSEIRI--SVLIRE---------DDLDAAARALHEQFQ  157 (178)
T ss_dssp             HHHHHHHHTTCCCCEE--EEETTEE--EEEEEG---------GGHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCCCCEEEE--EcCCCeE--EEEEeH---------HHHHHHHHHHHHHHc
Confidence            9999999999999883  3433222  354532         234555555666653

>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}

Probab=97.17  E-value=0.0015  Score=61.79  Aligned_cols=67  Identities=16%  Similarity=0.189  Sum_probs=49.1

Q ss_pred             CCeEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEec--CCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017375           46 MDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH--NTRAAALMQVTDEETGGAISDPERLSVIKELLCN  118 (372)
Q Consensus        46 ~~~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~--~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~  118 (372)
                      .....++|.|+||||+.+.+++.|+++|+||.++..++.  .|++.-...+..+  +... +   .+.|++.|..
T Consensus        20 ~~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~--~~~~-~---~~~L~~~l~~   88 (302)
T 3o1l_A           20 MRTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRAD--TLPF-D---LDGFREAFTP   88 (302)
T ss_dssp             CCEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGG--GSSS-C---HHHHHHHHHH
T ss_pred             cceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecC--CCCC-C---HHHHHHHHHH
Confidence            345789999999999999999999999999999999974  5665544444321  1112 2   3567777654

>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}

Probab=97.15  E-value=0.0018  Score=60.80  Aligned_cols=66  Identities=18%  Similarity=0.241  Sum_probs=48.4

Q ss_pred             CeEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEe--cCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017375           47 DHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT--HNTRAAALMQVTDEETGGAISDPERLSVIKELLCN  118 (372)
Q Consensus        47 ~~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T--~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~  118 (372)
                      ....++|.|+||||+.+.+++.|+++|+||.+.+.++  ..|++.-...+.-+  .... +   .+.|++.|..
T Consensus         5 ~~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~--~~~~-~---~~~L~~~f~~   72 (288)
T 3obi_A            5 HQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAA--AKVI-P---LASLRTGFGV   72 (288)
T ss_dssp             CEEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEES--SCCC-C---HHHHHHHHHH
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcC--CCCC-C---HHHHHHHHHH
Confidence            3468999999999999999999999999999999986  35665544444322  2122 2   3577777764

>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}

Probab=97.08  E-value=0.029  Score=52.59  Aligned_cols=109  Identities=11%  Similarity=0.140  Sum_probs=65.1

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEeeCC-CCCCCCHHHHHHHHHHHHHHHhc--
Q 017375          181 DYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAE--GPEAYQEYFIRHID-GSPVKSDAERERVIQCLKAAIER--  255 (372)
Q Consensus       181 ~~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~--g~~~~d~F~V~~~~-g~~~~~~~~~e~l~~~L~~~L~~--  255 (372)
                      ...++++.|+||||+++.|+++|+++|+||.+++.++.  .+++.-...+.-+- +...    ..+.|++.|...-++  
T Consensus         9 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~----~~~~L~~~f~~la~~~~   84 (292)
T 3lou_A            9 HQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADAL----RVDALRREFEPIAERFR   84 (292)
T ss_dssp             CEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC----C----CHHHHHHHHHHHHHHHT
T ss_pred             CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccCcccCC----CHHHHHHHHHHHHHhcC
Confidence            34689999999999999999999999999999999864  35554333332210 1011    235666666443221  


Q ss_pred             ------cCCC--ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEee
Q 017375          256 ------RVSE--GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVAT  295 (372)
Q Consensus       256 ------r~~~--~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T  295 (372)
                            ....  ...+-+++.+  --|.+|-.....-.++++-+-+-+
T Consensus        85 m~~~l~~~~~~~ri~vl~Sg~g--~~l~~ll~~~~~g~l~~~i~~Vis  130 (292)
T 3lou_A           85 MQWAIHDVAARPKVLIMVSKLE--HCLADLLFRWKMGELKMDIVGIVS  130 (292)
T ss_dssp             CEEEEEETTSCCEEEEEECSCC--HHHHHHHHHHHHTSSCCEEEEEEE
T ss_pred             cEEEeeccCCCCEEEEEEcCCC--cCHHHHHHHHHcCCCCcEEEEEEe
Confidence                  1122  2333334433  367777777666555444333333

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=97.08  E-value=0.11  Score=53.64  Aligned_cols=191  Identities=12%  Similarity=0.143  Sum_probs=118.3

Q ss_pred             CCCeEEEEEEec---CccchHHHHHHHHHhcCceEEEEEEEecCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHhhc
Q 017375           45 SMDHTAIELTGS---DRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLK  121 (372)
Q Consensus        45 ~~~~t~i~v~~~---DrpGLl~~i~~~l~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~L~  121 (372)
                      ..+...|.|++.   .+||..+++..+|++.|+||.--.  |. +. --.|.|...       +   .++..+.|++.+.
T Consensus       352 ~~~~a~VsvVG~gm~~~~Gv~a~if~aL~~~~Ini~~is--tS-e~-~Is~vI~~~-------d---~~~Av~aLh~~f~  417 (600)
T 3l76_A          352 EKGIAKIAIAGAGMIGRPGIAAKMFKTLADVGVNIEMIS--TS-EV-KVSCVIDQR-------D---ADRAIAALSNAFG  417 (600)
T ss_dssp             ECSEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCCCEEE--EC-SS-EEEEEEEGG-------G---HHHHHHHHHHHTT
T ss_pred             cCCeEEEEEECCCcccCccHHHHHHHHHHhCCCcEEEEe--cC-CC-EEEEEEcHH-------H---HHHHHHHHHHhhc
Confidence            356788999976   689999999999999999997543  32 22 345556431       1   1333445666554


Q ss_pred             CCCCCCcccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCCEEEEEecCCCCeEEEEEE-ecCCccHHHHHH
Q 017375          122 GSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTIT-SKDRPKLVFDTV  200 (372)
Q Consensus       122 ~~~~~~~~~~~l~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~v~V~-~~DrpGLL~~i~  200 (372)
                      .....+     .       + +       ....          ....-+.|..+.    +.+.|+|. .+|+||+.+++.
T Consensus       418 ~~~t~~-----~-------~-~-------~~~~----------~~~~v~Gia~~~----~~a~i~i~~~~~~~g~~~~if  463 (600)
T 3l76_A          418 VTLSPP-----K-------N-Q-------TDTS----------HLPAVRGVALDQ----DQAQIAIRHVPDRPGMAAQLF  463 (600)
T ss_dssp             CCBCCC-----C-------C-C-------CC-------------CCSCCEEEEEC----SEEEEEEEEEESSTTHHHHHH
T ss_pred             ccCCCc-----c-------c-c-------cccc----------ccCceEEEEeeC----CEEEEEEecCCCCccHHHHHH
Confidence            321110     0       0 0       0000          011224455543    45667665 599999999999


Q ss_pred             HHHHhCCceEEEEEEEeeC----C--eEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhc----c---CCCceEEEEEe
Q 017375          201 CTLTDMQYVVFHANIDAEG----P--EAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER----R---VSEGLKLELCT  267 (372)
Q Consensus       201 ~~L~~~glnI~~A~I~T~g----~--~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~----r---~~~~t~lev~~  267 (372)
                      +.|+++|+||.--......    +  ..--.|.|..         +.+++..+.|.+....    .   .+.-..|.+.|
T Consensus       464 ~~La~~~I~vDmI~q~~~~~~~~g~~~~~isftv~~---------~d~~~a~~~l~~~~~~~~~~~v~~~~~~akVSiVG  534 (600)
T 3l76_A          464 TALAEANISVDMIIQSQRCRINQGTPCRDIAFMVAE---------GDSSQAEAILQPLIKDWLDAAIVVNKAIAKVSIVG  534 (600)
T ss_dssp             HHHHHTTCCCCEEEEEEECCCSSSSCEEEEEEEEEH---------HHHHHHHHHHHHHTTTSTTCEEEEECCEEEEEEEC
T ss_pred             HHHHHcCCcEEEEEecccccccCCCccceEEEEEeH---------HHHHHHHHHHHHHHHhcCCceEEEeCCeEEEEEEC
Confidence            9999999999644443321    3  3344566642         2334444444332110    0   13357888886


Q ss_pred             ---CCCcchHHHHHHHHHhCCceEEEEE
Q 017375          268 ---TDRVGLLSNVTRIFRENSLTVTRAE  292 (372)
Q Consensus       268 ---~DrpGlL~~It~~L~~~gi~I~~a~  292 (372)
                         ..+||+.+++.++|++.||||....
T Consensus       535 ~GM~~~~Gvaa~~f~aL~~~~Ini~mis  562 (600)
T 3l76_A          535 SGMIGHPGVAAHFFAALAQENINIEMIA  562 (600)
T ss_dssp             GGGTTCTTHHHHHHHHHHTTTCCCCEEE
T ss_pred             cccccCccHHHHHHHHHHHCCCceEEEE
Confidence               5899999999999999999998876

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=97.04  E-value=0.2  Score=51.55  Aligned_cols=185  Identities=15%  Similarity=0.206  Sum_probs=114.1

Q ss_pred             CeEEEEEE-ecCccchHHHHHHHHHhcCceEEEEEEEe-cCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHhhcCCC
Q 017375           47 DHTAIELT-GSDRPGLLSEVSAVLTHLKCNVVSAEVWT-HNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKGSN  124 (372)
Q Consensus        47 ~~t~i~v~-~~DrpGLl~~i~~~l~~~glnI~~A~I~T-~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~L~~~~  124 (372)
                      +.+.|+|. .++.||.+++|...|+++|++|.--.-+. .+|...-.|.|...       +.   ++....|.+ +..+.
T Consensus       269 ~~~~i~i~~~~~~~g~~~~if~~La~~~I~Vd~I~qs~~~~~~~~Isftv~~~-------~~---~~a~~~l~~-~~~el  337 (600)
T 3l76_A          269 DQAKVALLRVPDRPGVASKLFRDIAQQQVDIDLIIQSIHDGNSNDIAFTVVKD-------LL---NTAEAVTSA-IAPAL  337 (600)
T ss_dssp             CCEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEEBCCCBTTEEEEEEEECGG-------GH---HHHHHHHHH-HGGGG
T ss_pred             CEEEEEEeCCCCcccHHHHHHHHHHHcCCCEEEEEeeccCCCCceEEEEEeHH-------HH---HHHHHHHHH-HHHHh
Confidence            44555554 47899999999999999999995221111 24444456777541       11   222222332 22111


Q ss_pred             CCCcccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCCEEEEEecCCCCeEEEEEEec---CCccHHHHHHH
Q 017375          125 KSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSK---DRPKLVFDTVC  201 (372)
Q Consensus       125 ~~~~~~~~l~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~v~V~~~---DrpGLL~~i~~  201 (372)
                      ..                +.        .            ......|.+.    .+...|.|.+.   .+||+.+++..
T Consensus       338 ~~----------------~~--------~------------~~~~~~v~~~----~~~a~VsvVG~gm~~~~Gv~a~if~  377 (600)
T 3l76_A          338 RS----------------YP--------E------------ADQEAEIIVE----KGIAKIAIAGAGMIGRPGIAAKMFK  377 (600)
T ss_dssp             SS----------------ST--------T------------CSSSSEEEEE----CSEEEEEEECGGGTTCTTHHHHHHH
T ss_pred             hc----------------cc--------c------------ccCcceeEec----CCeEEEEEECCCcccCccHHHHHHH
Confidence            00                00        0            0011234443    35789999976   69999999999


Q ss_pred             HHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhcc-CC--------------------Cc
Q 017375          202 TLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERR-VS--------------------EG  260 (372)
Q Consensus       202 ~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~r-~~--------------------~~  260 (372)
                      +|++.|+||..-.  |. + .--.|.|..         +..++..+.|.+.+... .|                    ..
T Consensus       378 aL~~~~Ini~~is--tS-e-~~Is~vI~~---------~d~~~Av~aLh~~f~~~~t~~~~~~~~~~~~~v~Gia~~~~~  444 (600)
T 3l76_A          378 TLADVGVNIEMIS--TS-E-VKVSCVIDQ---------RDADRAIAALSNAFGVTLSPPKNQTDTSHLPAVRGVALDQDQ  444 (600)
T ss_dssp             HHHHTTCCCCEEE--EC-S-SEEEEEEEG---------GGHHHHHHHHHHHTTCCBCCCCCCCC---CCSCCEEEEECSE
T ss_pred             HHHhCCCcEEEEe--cC-C-CEEEEEEcH---------HHHHHHHHHHHHhhcccCCCccccccccccCceEEEEeeCCE
Confidence            9999999997654  32 2 223355542         23455566666666321 11                    13


Q ss_pred             eEEEEE-eCCCcchHHHHHHHHHhCCceEEEEEEee
Q 017375          261 LKLELC-TTDRVGLLSNVTRIFRENSLTVTRAEVAT  295 (372)
Q Consensus       261 t~lev~-~~DrpGlL~~It~~L~~~gi~I~~a~i~T  295 (372)
                      +.|.|. .+|+||+.++|-+.|++.||+|....-+.
T Consensus       445 a~i~i~~~~~~~g~~~~if~~La~~~I~vDmI~q~~  480 (600)
T 3l76_A          445 AQIAIRHVPDRPGMAAQLFTALAEANISVDMIIQSQ  480 (600)
T ss_dssp             EEEEEEEEESSTTHHHHHHHHHHHTTCCCCEEEEEE
T ss_pred             EEEEEecCCCCccHHHHHHHHHHHcCCcEEEEEecc
Confidence            556664 58999999999999999999997766554

>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}

Probab=96.97  E-value=0.0023  Score=59.98  Aligned_cols=49  Identities=29%  Similarity=0.422  Sum_probs=40.2

Q ss_pred             CCeEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEe--cCCceEEEEEE
Q 017375           46 MDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT--HNTRAAALMQV   94 (372)
Q Consensus        46 ~~~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T--~~~~~~d~F~V   94 (372)
                      .....++|.|+||||+.+.+++.|+++|+||.+.+.++  ..|++.-...+
T Consensus         5 ~~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~   55 (287)
T 3nrb_A            5 NNQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSV   55 (287)
T ss_dssp             TTEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEE
Confidence            34678999999999999999999999999999999986  35555443333

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6

Probab=96.95  E-value=0.0029  Score=54.34  Aligned_cols=63  Identities=21%  Similarity=0.239  Sum_probs=49.5

Q ss_pred             eEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEec-C-CceEEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017375           48 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH-N-TRAAALMQVTDEETGGAISDPERLSVIKELLCN  118 (372)
Q Consensus        48 ~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~-~-~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~  118 (372)
                      ...|.|.+.|+||+|++++++|++.|+||.+..+.+. + +...-+|.|..        ++..++.|..+|.+
T Consensus         3 ~~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~~--------d~~~leqI~kqL~K   67 (164)
T 2f1f_A            3 RRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVG--------DEKVLEQIEKQLHK   67 (164)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEES--------CHHHHHHHHHHHHH
T ss_pred             EEEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEec--------cHHHHHHHHHHHcC
Confidence            3578899999999999999999999999999999864 3 45555666652        24566777777775

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6

Probab=96.89  E-value=0.0026  Score=54.68  Aligned_cols=64  Identities=19%  Similarity=0.280  Sum_probs=50.6

Q ss_pred             eEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecC--CeeeeEEEEEcCCCCCCCHHHHHHHHHHHHHhh
Q 017375          261 LKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKS--GKAVNTFYVGGASGYPVDAKIIDSIRQSIGQTI  330 (372)
Q Consensus       261 t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g--~~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~~~  330 (372)
                      +.|.|...||||+|++|+..|+++|+||.++.+.+..  +...=+|.+.   |.   +..+++|..+|.+..
T Consensus         4 ~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~---~d---~~~leqI~kqL~Kl~   69 (164)
T 2f1f_A            4 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV---GD---EKVLEQIEKQLHKLV   69 (164)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE---SC---HHHHHHHHHHHHHST
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe---cc---HHHHHHHHHHHcCCC
Confidence            5789999999999999999999999999999997543  3455556663   21   557889999888743

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6

Probab=96.75  E-value=0.0051  Score=52.87  Aligned_cols=64  Identities=20%  Similarity=0.200  Sum_probs=49.7

Q ss_pred             eEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEec--CCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHh
Q 017375           48 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH--NTRAAALMQVTDEETGGAISDPERLSVIKELLCNV  119 (372)
Q Consensus        48 ~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~--~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~  119 (372)
                      ...|.|...|+||+|++++++|++.|+||.+..+...  .+...-+|.|..        ++..++.|.++|.+.
T Consensus         4 ~~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~--------d~~~leql~kQL~Kl   69 (165)
T 2pc6_A            4 RHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNG--------PDEIVEQITKQLNKL   69 (165)
T ss_dssp             EEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEE--------CHHHHHHHHHHHHHS
T ss_pred             EEEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEec--------cHHHHHHHHHHhcCC
Confidence            3578899999999999999999999999999998764  344555666653        235667777777753

>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}

Probab=96.72  E-value=0.006  Score=52.06  Aligned_cols=59  Identities=19%  Similarity=0.328  Sum_probs=44.2

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 017375          262 KLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQ  328 (372)
Q Consensus       262 ~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~  328 (372)
                      .|+|.+.||+|+|++|+++|+++++||..+.+.+.|.     +|+.-+   ..+.+.+..|...+..
T Consensus         2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~g~-----i~~~~~---~~~~~~~~~L~~~l~~   60 (190)
T 2jhe_A            2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGR-----IYLNFA---ELEFESFSSLMAEIRR   60 (190)
T ss_dssp             EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETTTE-----EEEEEC---CCCHHHHHHHHHHHHH
T ss_pred             EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecCCE-----EEEEEE---eCCHHHHHHHHHHHHc
Confidence            4899999999999999999999999999999977632     555432   2233455666665554

>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}

Probab=96.65  E-value=0.021  Score=49.68  Aligned_cols=106  Identities=10%  Similarity=0.053  Sum_probs=71.3

Q ss_pred             CeEEEEEE-ecCCccHHHHHHHHHHhCCceEEEEEEEee---CCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhc-
Q 017375          181 DYSVVTIT-SKDRPKLVFDTVCTLTDMQYVVFHANIDAE---GPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER-  255 (372)
Q Consensus       181 ~~t~v~V~-~~DrpGLL~~i~~~L~~~glnI~~A~I~T~---g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~-  255 (372)
                      +.+.|+|. .+|+||.+++|..+|+++|+||..-.....   .+...-.|.|...      +..+..++.+.+...+.- 
T Consensus        15 ~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~------~~~~a~~~L~~~~~el~~~   88 (181)
T 3s1t_A           15 SEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRD------VGPAAVEKLDSLRNEIGFS   88 (181)
T ss_dssp             SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETT------THHHHHHHHHHTHHHHCCS
T ss_pred             CEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehh------HHHHHHHHHHHHHHhcCcc
Confidence            45566553 689999999999999999999976543222   3455566777532      111222222223333311 


Q ss_pred             c---CCCceEEEEEeC---CCcchHHHHHHHHHhCCceEEEEE
Q 017375          256 R---VSEGLKLELCTT---DRVGLLSNVTRIFRENSLTVTRAE  292 (372)
Q Consensus       256 r---~~~~t~lev~~~---DrpGlL~~It~~L~~~gi~I~~a~  292 (372)
                      .   ...-..+.|.|.   ++||+.+++.++|++.||||....
T Consensus        89 ~v~~~~~va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~Is  131 (181)
T 3s1t_A           89 QLLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS  131 (181)
T ss_dssp             EEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred             eEEEeCCEEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEE
Confidence            1   134577887766   899999999999999999999877

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=96.59  E-value=0.014  Score=50.01  Aligned_cols=110  Identities=17%  Similarity=0.160  Sum_probs=71.5

Q ss_pred             CCCeEEEEEEe-cCccchHHHHHHHHHhcCceEEEEEEEec---CCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHhh
Q 017375           45 SMDHTAIELTG-SDRPGLLSEVSAVLTHLKCNVVSAEVWTH---NTRAAALMQVTDEETGGAISDPERLSVIKELLCNVL  120 (372)
Q Consensus        45 ~~~~t~i~v~~-~DrpGLl~~i~~~l~~~glnI~~A~I~T~---~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~L  120 (372)
                      ..+.+.|+|.+ +|+||.++++..+|++.|+||.--.....   .|...-.|.|...       +.+   +..+.|.+ +
T Consensus        13 ~~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~-------d~~---~a~~~L~~-~   81 (167)
T 2dt9_A           13 DLDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKD-------FAQ---EALEALEP-V   81 (167)
T ss_dssp             ECSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGG-------GHH---HHHHHHHH-H
T ss_pred             eCCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehH-------HHH---HHHHHHHH-H
Confidence            45678888876 89999999999999999999985332211   2233446777541       222   22222322 1


Q ss_pred             cCCCCCCcccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCCEEEEEecCCCCeEEEEEEecC---CccHHH
Q 017375          121 KGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSKD---RPKLVF  197 (372)
Q Consensus       121 ~~~~~~~~~~~~l~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~v~V~~~D---rpGLL~  197 (372)
                      ..+.                                        .  .  .|.++    .+...|.|.+.+   +||.++
T Consensus        82 ~~~~----------------------------------------~--~--~v~~~----~~~a~vsvVG~gm~~~~Gv~a  113 (167)
T 2dt9_A           82 LAEI----------------------------------------G--G--EAILR----PDIAKVSIVGVGLASTPEVPA  113 (167)
T ss_dssp             HHHH----------------------------------------C--C--EEEEE----CSEEEEEEEESSGGGSTHHHH
T ss_pred             HHHh----------------------------------------C--C--cEEEe----CCEEEEEEECCCcccCcCHHH
Confidence            1000                                        0  0  22332    356788888876   999999


Q ss_pred             HHHHHHHhCCceEEEE
Q 017375          198 DTVCTLTDMQYVVFHA  213 (372)
Q Consensus       198 ~i~~~L~~~glnI~~A  213 (372)
                      ++.++|++.|+||..-
T Consensus       114 ~~f~aL~~~~InI~~i  129 (167)
T 2dt9_A          114 KMFQAVASTGANIEMI  129 (167)
T ss_dssp             HHHHHHHHTTCCCCEE
T ss_pred             HHHHHHHHCCCCEEEE
Confidence            9999999999999543

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6

Probab=96.58  E-value=0.0069  Score=52.03  Aligned_cols=64  Identities=20%  Similarity=0.324  Sum_probs=50.5

Q ss_pred             eEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecC--CeeeeEEEEEcCCCCCCCHHHHHHHHHHHHHhh
Q 017375          261 LKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKS--GKAVNTFYVGGASGYPVDAKIIDSIRQSIGQTI  330 (372)
Q Consensus       261 t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g--~~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~~~  330 (372)
                      ..|.|...|+||+|++|++.|+++|+||.++.+.+..  +...=+|.+.   |.   +..+++|..+|.+..
T Consensus         5 ~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~---~d---~~~leql~kQL~Kl~   70 (165)
T 2pc6_A            5 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTN---GP---DEIVEQITKQLNKLI   70 (165)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEE---EC---HHHHHHHHHHHHHST
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEe---cc---HHHHHHHHHHhcCCC
Confidence            5788999999999999999999999999999997443  4455556663   21   557889999888744

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A

Probab=96.20  E-value=0.049  Score=53.65  Aligned_cols=106  Identities=10%  Similarity=0.081  Sum_probs=71.5

Q ss_pred             CeEEEEEE-ecCCccHHHHHHHHHHhCCceEEEEEEEee---CCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhc-
Q 017375          181 DYSVVTIT-SKDRPKLVFDTVCTLTDMQYVVFHANIDAE---GPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER-  255 (372)
Q Consensus       181 ~~t~v~V~-~~DrpGLL~~i~~~L~~~glnI~~A~I~T~---g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~-  255 (372)
                      +.+.|+|. .+|+||.++++.+.|+++|+||..-...|.   .+...-.|.|...      +..+..++.+.+...+.- 
T Consensus       263 ~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~~------~~~~a~~~l~~~~~~~~~~  336 (421)
T 3ab4_A          263 SEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRS------DGRRAMEILKKLQVQGNWT  336 (421)
T ss_dssp             SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEETT------THHHHHHHHHHHHTTTTCS
T ss_pred             CEEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEech------hHHHHHHHHHHHHHHcCCc
Confidence            56778888 699999999999999999999987655443   2344555777531      211222222222222221 


Q ss_pred             c---CCCceEEEEEeC---CCcchHHHHHHHHHhCCceEEEEE
Q 017375          256 R---VSEGLKLELCTT---DRVGLLSNVTRIFRENSLTVTRAE  292 (372)
Q Consensus       256 r---~~~~t~lev~~~---DrpGlL~~It~~L~~~gi~I~~a~  292 (372)
                      .   ......+.|.|.   ++||+++++.++|++.||||....
T Consensus       337 ~v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is  379 (421)
T 3ab4_A          337 NVLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS  379 (421)
T ss_dssp             EEEEECCEEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCCEEE
T ss_pred             eEEEeCCeEEEEEEccCcccCccHHHHHHHHHHHCCCCEEEEE
Confidence            0   123456778775   799999999999999999999553

>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X

Probab=96.20  E-value=0.031  Score=49.51  Aligned_cols=107  Identities=10%  Similarity=0.053  Sum_probs=71.2

Q ss_pred             CCeEEEEEE-ecCCccHHHHHHHHHHhCCceEEEEEEEee---CCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhc
Q 017375          180 KDYSVVTIT-SKDRPKLVFDTVCTLTDMQYVVFHANIDAE---GPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER  255 (372)
Q Consensus       180 ~~~t~v~V~-~~DrpGLL~~i~~~L~~~glnI~~A~I~T~---g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~  255 (372)
                      .+.+.|+|. .+|+||++++|.++|++.|+||..-.....   .+.....|.+...      +..+...+.+.+...+..
T Consensus        33 ~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~~------d~~~~~~~l~~~~~~~~~  106 (200)
T 4go7_X           33 RSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRD------VGPAAVEKLDSLRNEIGF  106 (200)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEGG------GHHHHHHHHHTTHHHHCC
T ss_pred             CCEEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecchh------hHHHHHHHHHHHHhhhce
Confidence            356777776 599999999999999999999976443322   2455556776431      111222222333333321


Q ss_pred             c----CCCceEEEEEe---CCCcchHHHHHHHHHhCCceEEEEE
Q 017375          256 R----VSEGLKLELCT---TDRVGLLSNVTRIFRENSLTVTRAE  292 (372)
Q Consensus       256 r----~~~~t~lev~~---~DrpGlL~~It~~L~~~gi~I~~a~  292 (372)
                      .    .+.-..+.|.|   ..+||+.+++-++|++.||||....
T Consensus       107 ~~v~~~~~iakVSvVG~GM~~~~GVaak~F~aLa~~~INI~mIs  150 (200)
T 4go7_X          107 SQLLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS  150 (200)
T ss_dssp             SEEEEECCEEEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred             eeEEEecCeeeeeeeccccccCCCcHHHHHHHHHHCCCCEEEEE
Confidence            1    12345666664   4789999999999999999999885

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6

Probab=96.02  E-value=0.022  Score=49.99  Aligned_cols=65  Identities=15%  Similarity=0.338  Sum_probs=50.2

Q ss_pred             ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEe-ecC-CeeeeEEEEEcCCCCCCCHHHHHHHHHHHHHhh
Q 017375          260 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVA-TKS-GKAVNTFYVGGASGYPVDAKIIDSIRQSIGQTI  330 (372)
Q Consensus       260 ~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~-T~g-~~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~~~  330 (372)
                      ...|.|...|+||.|++|+..|++.|+||.+..+. |.. +...=++.|...      +..+++|..+|.+.+
T Consensus        29 ~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~------e~~ieqL~kQL~KLi   95 (193)
T 2fgc_A           29 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD------DKTIEQIEKQAYKLV   95 (193)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC------TTHHHHHHHHHTTST
T ss_pred             EEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECC------HHHHHHHHHHhcCcC
Confidence            47899999999999999999999999999999886 443 334445555322      336788999988743

>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}

Probab=95.96  E-value=0.43  Score=41.25  Aligned_cols=137  Identities=11%  Similarity=0.105  Sum_probs=82.9

Q ss_pred             CCeEEEEEE-ecCccchHHHHHHHHHhcCceEEEEEEEec---CCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHhhc
Q 017375           46 MDHTAIELT-GSDRPGLLSEVSAVLTHLKCNVVSAEVWTH---NTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLK  121 (372)
Q Consensus        46 ~~~t~i~v~-~~DrpGLl~~i~~~l~~~glnI~~A~I~T~---~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~L~  121 (372)
                      .+.+.|+|. .+|+||.+++|...|+++|+||.--.....   .|...-.|.|...       +.+   +..+.|.+ +.
T Consensus        14 ~~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~-------~~~---~a~~~L~~-~~   82 (181)
T 3s1t_A           14 RSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRD-------VGP---AAVEKLDS-LR   82 (181)
T ss_dssp             CSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETT-------THH---HHHHHHHH-TH
T ss_pred             CCEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehh-------HHH---HHHHHHHH-HH
Confidence            455666653 689999999999999999999973322222   3444557777641       212   22222322 11


Q ss_pred             CCCCCCcccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCCEEEEEecCCCCeEEEEEEec---CCccHHHH
Q 017375          122 GSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSK---DRPKLVFD  198 (372)
Q Consensus       122 ~~~~~~~~~~~l~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~v~V~~~---DrpGLL~~  198 (372)
                      .+..                                           ...|.++    .+...|.|.+.   +.||+.++
T Consensus        83 ~el~-------------------------------------------~~~v~~~----~~va~VsvVG~gm~~~~Gvaa~  115 (181)
T 3s1t_A           83 NEIG-------------------------------------------FSQLLYD----DHIGKVSLIGAGMRSHPGVTAT  115 (181)
T ss_dssp             HHHC-------------------------------------------CSEEEEE----SCEEEEEEEEECCTTCHHHHHH
T ss_pred             HhcC-------------------------------------------cceEEEe----CCEEEEEEEecccccCchHHHH
Confidence            1000                                           0123332    24678888765   89999999


Q ss_pred             HHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHH
Q 017375          199 TVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAI  253 (372)
Q Consensus       199 i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L  253 (372)
                      +.++|++.|+||....  |..-..  .|.|..         +..++..+.|.+.+
T Consensus       116 ~f~aLa~~~InI~~Is--tSei~I--s~vV~~---------~d~~~Av~aLH~~f  157 (181)
T 3s1t_A          116 FCEALAAVGVNIELIS--TSEIRI--SVLCRD---------TELDKAVVALHEAF  157 (181)
T ss_dssp             HHHHHHHTTCCCCEEE--EETTEE--EEEEEG---------GGHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCcEEEEE--cCCCEE--EEEEeH---------HHHHHHHHHHHHHH
Confidence            9999999999998765  333222  255543         23345555666665

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6

Probab=95.86  E-value=0.029  Score=49.18  Aligned_cols=63  Identities=14%  Similarity=0.296  Sum_probs=47.1

Q ss_pred             eEEEEEEecCccchHHHHHHHHHhcCceEEEEEEE-ecC-CceEEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017375           48 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVW-THN-TRAAALMQVTDEETGGAISDPERLSVIKELLCN  118 (372)
Q Consensus        48 ~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~-T~~-~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~  118 (372)
                      ...|.|...|+||.|++|+++|+..|+||.+-.+. |.+ +..--++.|..+       + ..++.|.++|.+
T Consensus        29 ~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~-------e-~~ieqL~kQL~K   93 (193)
T 2fgc_A           29 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD-------D-KTIEQIEKQAYK   93 (193)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC-------T-THHHHHHHHHTT
T ss_pred             EEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECC-------H-HHHHHHHHHhcC
Confidence            46889999999999999999999999999998886 444 444456666531       1 345667766664

>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}

Probab=95.72  E-value=0.041  Score=46.73  Aligned_cols=59  Identities=19%  Similarity=0.158  Sum_probs=44.0

Q ss_pred             EEEEEecCccchHHHHHHHHHhcCceEEEEEEEecCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017375           50 AIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCN  118 (372)
Q Consensus        50 ~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~  118 (372)
                      .|.|.|.||+||+++|+.+|+.+++||....+.+. |.    +++.-+  .   .+.+.+..|...+..
T Consensus         2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~-g~----i~~~~~--~---~~~~~~~~L~~~l~~   60 (190)
T 2jhe_A            2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI-GR----IYLNFA--E---LEFESFSSLMAEIRR   60 (190)
T ss_dssp             EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT-TE----EEEEEC--C---CCHHHHHHHHHHHHH
T ss_pred             EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC-CE----EEEEEE--e---CCHHHHHHHHHHHHc
Confidence            58899999999999999999999999999999776 33    334321  1   133555666666654

>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12

Probab=95.59  E-value=0.014  Score=51.99  Aligned_cols=38  Identities=21%  Similarity=0.280  Sum_probs=31.0

Q ss_pred             ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecC
Q 017375          260 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKS  297 (372)
Q Consensus       260 ~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g  297 (372)
                      ...|.+.+.||||+|++|+++|+++++||...+..+..
T Consensus         4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~   41 (223)
T 1y7p_A            4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIK   41 (223)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECC
T ss_pred             eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccc
Confidence            36789999999999999999999999999999998863

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A

Probab=95.40  E-value=0.79  Score=44.91  Aligned_cols=136  Identities=15%  Similarity=0.170  Sum_probs=83.4

Q ss_pred             CeEEEEEE-ecCccchHHHHHHHHHhcCceEEEEEEEec---CCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHhhcC
Q 017375           47 DHTAIELT-GSDRPGLLSEVSAVLTHLKCNVVSAEVWTH---NTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKG  122 (372)
Q Consensus        47 ~~t~i~v~-~~DrpGLl~~i~~~l~~~glnI~~A~I~T~---~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~L~~  122 (372)
                      +.+.|+|. .+|+||.+++|...|+++|+||.--...|.   .|...-.|.|...       +.++   ..+.|.+ +..
T Consensus       263 ~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~~-------~~~~---a~~~l~~-~~~  331 (421)
T 3ab4_A          263 SEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRS-------DGRR---AMEILKK-LQV  331 (421)
T ss_dssp             SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEETT-------THHH---HHHHHHH-HHT
T ss_pred             CEEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEech-------hHHH---HHHHHHH-HHH
Confidence            44567776 689999999999999999999985544343   2334456777531       2222   2222332 222


Q ss_pred             CCCCCcccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCCEEEEEecCCCCeEEEEEEec---CCccHHHHH
Q 017375          123 SNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSK---DRPKLVFDT  199 (372)
Q Consensus       123 ~~~~~~~~~~l~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~v~V~~~---DrpGLL~~i  199 (372)
                      +...                                           ..|.++    .+...|.|.+.   +.||.++++
T Consensus       332 ~~~~-------------------------------------------~~v~~~----~~~a~vsvVG~gm~~~~Gv~a~~  364 (421)
T 3ab4_A          332 QGNW-------------------------------------------TNVLYD----DQVGKVSLVGAGMKSHPGVTAEF  364 (421)
T ss_dssp             TTTC-------------------------------------------SEEEEE----CCEEEEEEECGGGTSCTTHHHHH
T ss_pred             HcCC-------------------------------------------ceEEEe----CCeEEEEEEccCcccCccHHHHH
Confidence            1110                                           123332    35678888875   799999999


Q ss_pred             HHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHH
Q 017375          200 VCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAI  253 (372)
Q Consensus       200 ~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L  253 (372)
                      ..+|++.|+||..-  .|......  |.|..         +..++..+.|.+.+
T Consensus       365 f~aL~~~~InI~~i--s~Se~~is--~vV~~---------~d~~~Av~~Lh~~f  405 (421)
T 3ab4_A          365 MEALRDVNVNIELI--STSEIRIS--VLIRE---------DDLDAAARALHEQF  405 (421)
T ss_dssp             HHHHHHTTCCCCEE--EEETTEEE--EEEEG---------GGHHHHHHHHHHHT
T ss_pred             HHHHHHCCCCEEEE--EcCCCeEE--EEEeH---------HHHHHHHHHHHHHH
Confidence            99999999999843  34433332  44532         23455555666555

>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12

Probab=94.93  E-value=0.036  Score=49.42  Aligned_cols=48  Identities=10%  Similarity=0.308  Sum_probs=36.1

Q ss_pred             eEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEec-----CCceEEEEEEe
Q 017375           48 HTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH-----NTRAAALMQVT   95 (372)
Q Consensus        48 ~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~-----~~~~~d~F~V~   95 (372)
                      ...|.|.+.||||+|++|+.+|++++.||...+..+.     ++.+.-.+.|.
T Consensus         4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~IEV~   56 (223)
T 1y7p_A            4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIE   56 (223)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEEC
T ss_pred             eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEEEEEC
Confidence            4678999999999999999999999999999999995     34454455554

>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X

Probab=94.48  E-value=0.26  Score=43.46  Aligned_cols=139  Identities=11%  Similarity=0.105  Sum_probs=81.6

Q ss_pred             CCCCeEEEEEE-ecCccchHHHHHHHHHhcCceEEEEEEEe--c-CCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHh
Q 017375           44 QSMDHTAIELT-GSDRPGLLSEVSAVLTHLKCNVVSAEVWT--H-NTRAAALMQVTDEETGGAISDPERLSVIKELLCNV  119 (372)
Q Consensus        44 ~~~~~t~i~v~-~~DrpGLl~~i~~~l~~~glnI~~A~I~T--~-~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~  119 (372)
                      .+.+...|+|. .+|+||..++|...|++.|+||----...  . ++.....|.+...       +.   ++....|.+ 
T Consensus        31 ~~~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~~-------d~---~~~~~~l~~-   99 (200)
T 4go7_X           31 HDRSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRD-------VG---PAAVEKLDS-   99 (200)
T ss_dssp             EECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEGG-------GH---HHHHHHHHT-
T ss_pred             ccCCEEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecchh-------hH---HHHHHHHHH-
Confidence            35567888876 58999999999999999999997432221  1 2333446777541       11   222222221 


Q ss_pred             hcCCCCCCcccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCCEEEEEecCCCCeEEEEEE---ecCCccHH
Q 017375          120 LKGSNKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTIT---SKDRPKLV  196 (372)
Q Consensus       120 L~~~~~~~~~~~~l~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~v~V~---~~DrpGLL  196 (372)
                      +..+..                                           ...|.+++    +...|.|.   .+..||+.
T Consensus       100 ~~~~~~-------------------------------------------~~~v~~~~----~iakVSvVG~GM~~~~GVa  132 (200)
T 4go7_X          100 LRNEIG-------------------------------------------FSQLLYDD----HIGKVSLIGAGMRSHPGVT  132 (200)
T ss_dssp             THHHHC-------------------------------------------CSEEEEEC----CEEEEEEEEESCTTCHHHH
T ss_pred             HHhhhc-------------------------------------------eeeEEEec----CeeeeeeeccccccCCCcH
Confidence            111000                                           01222222    34455555   57799999


Q ss_pred             HHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHH
Q 017375          197 FDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAI  253 (372)
Q Consensus       197 ~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L  253 (372)
                      +++.++|++.|+||..-.  |..-  --.+.|..         +..++-.+.|.+++
T Consensus       133 ak~F~aLa~~~INI~mIs--tSEi--~IS~vV~~---------~d~~~Av~aLH~~F  176 (200)
T 4go7_X          133 ATFCEALAAVGVNIELIS--TSEI--RISVLCRD---------TELDKAVVALHEAF  176 (200)
T ss_dssp             HHHHHHHHHTTCCCCEEE--ECSS--EEEEEEEG---------GGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCEEEEE--ccCC--EEEEEEeH---------HHHHHHHHHHHHHh
Confidence            999999999999998753  3222  22244532         23455555666665

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=93.47  E-value=0.22  Score=50.44  Aligned_cols=63  Identities=16%  Similarity=0.285  Sum_probs=49.8

Q ss_pred             CCceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeec--CCeeeeEEEEEcCCCCCCCHHHHHHHHH
Q 017375          258 SEGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATK--SGKAVNTFYVGGASGYPVDAKIIDSIRQ  324 (372)
Q Consensus       258 ~~~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~--g~~~~d~F~v~~~~g~~~~~~~~~~l~~  324 (372)
                      +..+.|-+.-.|+||.+..|+..|.++||||..+++.-.  |+.+.=++.+    ..+++++.+++|++
T Consensus       452 ~~~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~v----d~~~~~~~l~~l~~  516 (529)
T 1ygy_A          452 AQGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRL----DQDVPDDVRTAIAA  516 (529)
T ss_dssp             SCSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEE----SSCCCHHHHHHHHH
T ss_pred             CCccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEE----CCCCCHHHHHHHhc
Confidence            457889999999999999999999999999999999865  4445444444    33666767777765

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=93.37  E-value=0.15  Score=49.96  Aligned_cols=47  Identities=19%  Similarity=0.345  Sum_probs=41.4

Q ss_pred             ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEE
Q 017375          260 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYV  306 (372)
Q Consensus       260 ~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v  306 (372)
                      ...|-+.-.|+||.+..|+++|.++||||......+.|+.+.-++-+
T Consensus       331 ~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r~g~~A~~vidv  377 (404)
T 1sc6_A          331 GRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDI  377 (404)
T ss_dssp             SEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEE
T ss_pred             cceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccCCCCEEEEEEEc
Confidence            35677888999999999999999999999999999988777666666

>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}

Probab=93.07  E-value=0.24  Score=46.10  Aligned_cols=56  Identities=18%  Similarity=0.193  Sum_probs=45.4

Q ss_pred             ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCe-eeeEEEEEcCCCCCCCH
Q 017375          260 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGK-AVNTFYVGGASGYPVDA  316 (372)
Q Consensus       260 ~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~-~~d~F~v~~~~g~~~~~  316 (372)
                      .|.|-+..+|+||-||++-..|+.+|||+.+.+-.-.... -+=.||| |..|..-++
T Consensus       200 ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~Ffv-D~eg~~~d~  256 (283)
T 2qmx_A          200 KTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYA-DFIGHREDQ  256 (283)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEE-EEESCTTSH
T ss_pred             eEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEE-EEecCCCcH
Confidence            4667777789999999999999999999999998866544 5668888 667866554

>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}

Probab=91.71  E-value=0.52  Score=44.45  Aligned_cols=94  Identities=14%  Similarity=0.204  Sum_probs=63.2

Q ss_pred             HhCC-ceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhccCCCceEEEEEeC-CCcchHHHHHHHH
Q 017375          204 TDMQ-YVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRVSEGLKLELCTT-DRVGLLSNVTRIF  281 (372)
Q Consensus       204 ~~~g-lnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~r~~~~t~lev~~~-DrpGlL~~It~~L  281 (372)
                      ..+| +.|..-.|....+- .-.|.|..........                 .....|.|-+..+ |+||-||++-..|
T Consensus       162 ~~Yg~L~il~~~I~D~~~N-~TRFlvl~~~~~~~~~-----------------~~~~kTSl~f~~~~~~pGaL~~~L~~F  223 (313)
T 3mwb_A          162 AEQPGLNVLAEDIGDNPDA-VTRFILVSRPGALPER-----------------TGADKTTVVVPLPEDHPGALMEILDQF  223 (313)
T ss_dssp             HHCTTCEEEESCCCSCTTC-EEEEEEEECSCCCCCC-----------------CSSEEEEEEEECSSCCTTHHHHHHHHH
T ss_pred             HHcCChhhhhhcccCCCcc-eeEEEEEecCCCCCCC-----------------CCCCeEEEEEEeCCCCCCHHHHHHHHH
Confidence            3467 88888777654422 2236666443321110                 0123577777775 9999999999999


Q ss_pred             HhCCceEEEEEEeecCCe-eeeEEEEEcCCCCCCCH
Q 017375          282 RENSLTVTRAEVATKSGK-AVNTFYVGGASGYPVDA  316 (372)
Q Consensus       282 ~~~gi~I~~a~i~T~g~~-~~d~F~v~~~~g~~~~~  316 (372)
                      +.+|||+.+.+-.-..+. -+=.||| |..|..-++
T Consensus       224 a~~gINLtkIESRP~~~~~~~Y~Ffi-D~eg~~~d~  258 (313)
T 3mwb_A          224 ASRGVNLSRIESRPTGQYLGHYFFSI-DADGHATDS  258 (313)
T ss_dssp             HTTTCCEEEEEEEECSSSTTSEEEEE-EEESCTTSH
T ss_pred             HHCCccEEEEEEeecCCCCccEEEEE-EEeCCCCcH
Confidence            999999999998765444 4567888 667766444

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=91.71  E-value=0.49  Score=46.26  Aligned_cols=49  Identities=8%  Similarity=0.045  Sum_probs=43.6

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEe
Q 017375          181 DYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIR  229 (372)
Q Consensus       181 ~~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~  229 (372)
                      +...+.+.-.|+||.+..|+.+|.++|+||......+.|+.++-++.+.
T Consensus       330 ~~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r~g~~A~~vidvD  378 (404)
T 1sc6_A          330 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIE  378 (404)
T ss_dssp             SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEEE
T ss_pred             CcceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccCCCCEEEEEEEcC
Confidence            4557889999999999999999999999999999999888888777664

>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3

Probab=91.62  E-value=0.56  Score=43.18  Aligned_cols=83  Identities=14%  Similarity=0.223  Sum_probs=58.5

Q ss_pred             hCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhccCCCceEEEEEe---CCCcchHHHHHHHH
Q 017375          205 DMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERRVSEGLKLELCT---TDRVGLLSNVTRIF  281 (372)
Q Consensus       205 ~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~r~~~~t~lev~~---~DrpGlL~~It~~L  281 (372)
                      .+|+.|..-.|....+- .-.|+|..... +.                    ....|.|-+..   .|+||-|+++-..|
T Consensus       153 ~ygL~il~~~I~D~~~N-~TRF~vl~~~~-~~--------------------~~~ktsl~f~~~~~~~~pGaL~~~L~~F  210 (267)
T 2qmw_A          153 AYGFTPIDTHIEDYPHN-VTRFLVIKNQQ-QF--------------------DQNATSLMFLITPMHDKPGLLASVLNTF  210 (267)
T ss_dssp             GGTCCEEEECCCSCSCC-EEEEEEEESCC-CC--------------------CSSCSEEEEEEEESSCCTTHHHHHHHHH
T ss_pred             HCCCcEeeccccCCCCC-ceEEEEEecCC-CC--------------------CCCeEEEEEEcCCCCCCcChHHHHHHHH
Confidence            45888888777665432 22366654322 10                    12356777777   89999999999999


Q ss_pred             HhCCceEEEEEEeecCC-eeeeEEEEEcCC
Q 017375          282 RENSLTVTRAEVATKSG-KAVNTFYVGGAS  310 (372)
Q Consensus       282 ~~~gi~I~~a~i~T~g~-~~~d~F~v~~~~  310 (372)
                      +.+|||+.+.+-.-..+ .-+=.||| |..
T Consensus       211 a~~gINLtkIESRP~~~~~~~Y~Ffi-D~e  239 (267)
T 2qmw_A          211 ALFNINLSWIESRPLKTQLGMYRFFV-QAD  239 (267)
T ss_dssp             HTTTCCEEEEEEEECSSSTTCEEEEE-EES
T ss_pred             HHcCCCeeEEEEeecCCCCccEEEEE-EEe
Confidence            99999999999886654 45668888 444

>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}

Probab=91.54  E-value=0.96  Score=42.91  Aligned_cols=55  Identities=20%  Similarity=0.298  Sum_probs=42.4

Q ss_pred             eEEEEEeC--CCcchHHHHHHHHHhCCceEEEEEEeecCCe-eeeEEEEEcCCCCCCCH
Q 017375          261 LKLELCTT--DRVGLLSNVTRIFRENSLTVTRAEVATKSGK-AVNTFYVGGASGYPVDA  316 (372)
Q Consensus       261 t~lev~~~--DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~-~~d~F~v~~~~g~~~~~  316 (372)
                      +.+-+...  |+||-||++-..|+.+|||+.+.+-.-.... -+=.||| |..|..-++
T Consensus       207 ts~i~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~Ffi-D~eg~~~d~  264 (329)
T 3luy_A          207 ESVLTLIPLVTGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIV-TLDAAPWEE  264 (329)
T ss_dssp             EEEEEEECSCCSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEE-EESSCTTSH
T ss_pred             eEEEEEecCCCCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEE-EEeCCcCCH
Confidence            44444444  7999999999999999999999998866555 4557887 677876555

>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}

Probab=91.23  E-value=1.3  Score=43.70  Aligned_cols=114  Identities=10%  Similarity=0.138  Sum_probs=74.8

Q ss_pred             CeEEEEEEe---cCCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhc-c
Q 017375          181 DYSVVTITS---KDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIER-R  256 (372)
Q Consensus       181 ~~t~v~V~~---~DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~-r  256 (372)
                      +.+.|+|.+   ++.||.++++..+|+++|++|...  .+...  .-.|.|...+-.   .  ..+.+.+.|...+.. .
T Consensus       297 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~i--~~~~~--~is~~V~~~d~~---~--~~~~~~~el~~~~~~~~  367 (446)
T 3tvi_A          297 NFTVIAIEKALLNSEVGFCRKILSILEMYGVSFEHM--PSGVD--SVSLVIEDCKLD---G--KCDKIIEEIKKQCNPDS  367 (446)
T ss_dssp             EEEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEEB--CEETT--EEEEEEEHHHHT---T--THHHHHHHHHHHSCCSE
T ss_pred             CEEEEEEEecCCCccHHHHHHHHHHHHHcCCcEEEE--ecCCC--EEEEEEecchHH---H--HHHHHHHHHHHhcCCCc
Confidence            467888886   699999999999999999999753  22222  234666432110   0  223444444443321 1


Q ss_pred             ---CCCceEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEeecCCeeee-EEEE
Q 017375          257 ---VSEGLKLELCTT---DRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVN-TFYV  306 (372)
Q Consensus       257 ---~~~~t~lev~~~---DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d-~F~v  306 (372)
                         ...-..|.|.|.   .+||+.+++.++|++.||||....   +|..... .|.|
T Consensus       368 v~v~~~vA~VSvVG~gM~~~~Gvaarif~aLa~~~InI~mIs---qgtSei~Is~vV  421 (446)
T 3tvi_A          368 IEIHPNMALVATVGTGMAKTKGIANKIFTALSKENVNIRMID---QGSSEINVIVGV  421 (446)
T ss_dssp             EEEEEEEEEEEEECGGGSSCTTHHHHHHHHHHHTTCCEEEEE---ECSCTTEEEEEE
T ss_pred             EEEeCCeEEEEEECCCccCChhHHHHHHHHHHHCCCCEEEEE---ecCCCceEEEEE
Confidence               123478888876   589999999999999999998876   4444333 3444

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=88.52  E-value=1.6  Score=44.07  Aligned_cols=62  Identities=18%  Similarity=0.307  Sum_probs=48.1

Q ss_pred             CCeEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEec--CCceEEEEEEecCCCCCCCCCHHHHHHHH
Q 017375           46 MDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH--NTRAAALMQVTDEETGGAISDPERLSVIK  113 (372)
Q Consensus        46 ~~~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~--~~~~~d~F~V~~~~~g~~i~~~~~~~~l~  113 (372)
                      .....+.+.-+|+||.+.+++..|.++|+||...++...  ++.++-++.|.+     ++ +++.+++|+
T Consensus       452 ~~~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~vd~-----~~-~~~~l~~l~  515 (529)
T 1ygy_A          452 AQGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQ-----DV-PDDVRTAIA  515 (529)
T ss_dssp             SCSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESS-----CC-CHHHHHHHH
T ss_pred             CCccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEECC-----CC-CHHHHHHHh
Confidence            356778889999999999999999999999999999874  666777776643     24 344555554

>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}

Probab=87.33  E-value=9.3  Score=37.60  Aligned_cols=110  Identities=8%  Similarity=0.118  Sum_probs=69.2

Q ss_pred             CeEEEEEEe---cCccchHHHHHHHHHhcCceEEEEEEEecCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHhhcCC
Q 017375           47 DHTAIELTG---SDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKGS  123 (372)
Q Consensus        47 ~~t~i~v~~---~DrpGLl~~i~~~l~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~L~~~  123 (372)
                      +.+.|+|..   ++.||.+++|..+|+++|++|.--  .+ + ...-.|.|...  .  ...  ...++.+.|...+.  
T Consensus       297 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~i--~~-~-~~~is~~V~~~--d--~~~--~~~~~~~el~~~~~--  364 (446)
T 3tvi_A          297 NFTVIAIEKALLNSEVGFCRKILSILEMYGVSFEHM--PS-G-VDSVSLVIEDC--K--LDG--KCDKIIEEIKKQCN--  364 (446)
T ss_dssp             EEEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEEB--CE-E-TTEEEEEEEHH--H--HTT--THHHHHHHHHHHSC--
T ss_pred             CEEEEEEEecCCCccHHHHHHHHHHHHHcCCcEEEE--ec-C-CCEEEEEEecc--h--HHH--HHHHHHHHHHHhcC--
Confidence            456677775   689999999999999999999732  22 2 22345767541  1  100  11223222322111  


Q ss_pred             CCCCcccccccccccchhhhhhhhhhccccccccCCCCCCCCCCCCCEEEEEecCCCCeEEEEEEec---CCccHHHHHH
Q 017375          124 NKSGLAKTEVSQDVTHTERRLHQMMFADRDYERTGTDDDSLDEKQRPNVNVVNCYDKDYSVVTITSK---DRPKLVFDTV  200 (372)
Q Consensus       124 ~~~~~~~~~l~~~~~~~~rRl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~t~v~V~~~---DrpGLL~~i~  200 (372)
                                                                   ...|.+++    +...|.|++.   ..||+.+++.
T Consensus       365 ---------------------------------------------~~~v~v~~----~vA~VSvVG~gM~~~~Gvaarif  395 (446)
T 3tvi_A          365 ---------------------------------------------PDSIEIHP----NMALVATVGTGMAKTKGIANKIF  395 (446)
T ss_dssp             ---------------------------------------------CSEEEEEE----EEEEEEEECGGGSSCTTHHHHHH
T ss_pred             ---------------------------------------------CCcEEEeC----CeEEEEEECCCccCChhHHHHHH
Confidence                                                         01233332    4678888875   5899999999


Q ss_pred             HHHHhCCceEEEEEEEe
Q 017375          201 CTLTDMQYVVFHANIDA  217 (372)
Q Consensus       201 ~~L~~~glnI~~A~I~T  217 (372)
                      ++|++.|+||......|
T Consensus       396 ~aLa~~~InI~mIsqgt  412 (446)
T 3tvi_A          396 TALSKENVNIRMIDQGS  412 (446)
T ss_dssp             HHHHHTTCCEEEEEECS
T ss_pred             HHHHHCCCCEEEEEecC
Confidence            99999999998744333

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=86.41  E-value=3.7  Score=40.15  Aligned_cols=77  Identities=17%  Similarity=0.207  Sum_probs=53.9

Q ss_pred             HHHHHHHhhCCCCcc-cCCCceecccCCCCeEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEecCCceEEEEEEe
Q 017375           19 ILDYIRKCLGPEACF-ASSMRSVGVKQSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVT   95 (372)
Q Consensus        19 ~~~~i~~~l~~~~~~-~~~~~~~~~~~~~~~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~~~~~d~F~V~   95 (372)
                      ..+.|...|.+.... .+....++-....+..+|.+.-.|.||.+.+|..+|+++|+||..-...|.++.+.-+.-|.
T Consensus       313 ~~~nl~~~l~~g~~~~~Vn~p~~~~~~~~~~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~~~y~~~d~~  390 (416)
T 3k5p_A          313 VTRKLVEYSDVGSTVGAVNFPQVQLPPRPTGTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGEVGYLVMEAD  390 (416)
T ss_dssp             HHHHHHHHHHHCCCTTBSSSCCCCCCCCSSSEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEEC
T ss_pred             HHHHHHHHHhhCCCCceeeCCCcCCCCCCCceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCceEEEEEEec
Confidence            445566666533211 11100232223346789999999999999999999999999999888888888876666554

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=85.41  E-value=2.1  Score=41.86  Aligned_cols=49  Identities=8%  Similarity=0.114  Sum_probs=43.5

Q ss_pred             CCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEE
Q 017375          180 KDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFI  228 (372)
Q Consensus       180 ~~~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V  228 (372)
                      .+...|.+.-.|.||.|.+|..+|+++|+||..-...|.|+.++-+.-|
T Consensus       341 ~~~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~~~y~~~d~  389 (416)
T 3k5p_A          341 PTGTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGEVGYLVMEA  389 (416)
T ss_dssp             SSSEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEE
T ss_pred             CCceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCceEEEEEEe
Confidence            3567999999999999999999999999999999999999888655555

>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10

Probab=84.85  E-value=3.2  Score=41.76  Aligned_cols=117  Identities=13%  Similarity=0.142  Sum_probs=74.8

Q ss_pred             CeEEEEEEe---cCCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCC-CHHHHHHHHHHHHHHHhcc
Q 017375          181 DYSVVTITS---KDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVK-SDAERERVIQCLKAAIERR  256 (372)
Q Consensus       181 ~~t~v~V~~---~DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~-~~~~~e~l~~~L~~~L~~r  256 (372)
                      +.+.|+|.+   .++||.++++..+|+++|++|..-.  |.  ...-+|.|...+..... ....++.+.+.|.. + ..
T Consensus       340 ~~~~I~i~~~~m~~~~g~~~~if~~la~~~I~vd~I~--ss--e~sis~~v~~~~~~~~~~~~~~l~~~~~el~~-~-~~  413 (510)
T 2cdq_A          340 NVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVA--TS--EVSISLTLDPSKLWSRELIQQELDHVVEELEK-I-AV  413 (510)
T ss_dssp             EEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEE--EE--TTEEEEEECCGGGSSSCCCHHHHHHHHHHHTT-T-SE
T ss_pred             CeEEEEEEcCCCCCcccHHHHHHHHHHHcCCcEEEEE--eC--CCeEEEEEechHhhhhhHHHHHHHHHHHHhCC-C-Ce
Confidence            567889985   7899999999999999999998762  22  22334666432211110 11123333332221 0 01


Q ss_pred             ---CCCceEEEEEeC--CCcchHHHHHHHHHhCCceEEEEEEeecCCeeee-EEEE
Q 017375          257 ---VSEGLKLELCTT--DRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVN-TFYV  306 (372)
Q Consensus       257 ---~~~~t~lev~~~--DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d-~F~v  306 (372)
                         ...-..|.|.|.  ..||+.+++..+|++.||||....   +|..... .|.|
T Consensus       414 v~~~~~~a~VsiVG~m~~~~Gvaa~~f~aL~~~~InI~mIs---qGsSei~Is~vV  466 (510)
T 2cdq_A          414 VNLLKGRAIISLIGNVQHSSLILERAFHVLYTKGVNVQMIS---QGASKVNISFIV  466 (510)
T ss_dssp             EEEEEEEEEEEEEECGGGHHHHHHHHHHHHHHHTCCCSEEE---ECTTCSEEEEEE
T ss_pred             EEEeCCcEEEEEEEECCCChhHHHHHHHHHHHCCCCEEEEE---ecCCcceEEEEE
Confidence               123467778887  678999999999999999998874   5655444 4555

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=84.21  E-value=0.9  Score=44.93  Aligned_cols=34  Identities=29%  Similarity=0.496  Sum_probs=30.1

Q ss_pred             ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEE
Q 017375          260 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEV  293 (372)
Q Consensus       260 ~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i  293 (372)
                      .+-+.+...|+||+|.+|+.+|.++||+|.+..=
T Consensus       359 ~yy~r~~~~d~~gvl~~i~~~~~~~~isi~~~~q  392 (444)
T 3mtj_A          359 AYYLRLRAFDRPGVLADITRILADSSISIDAMVQ  392 (444)
T ss_dssp             EEEEEEEEC-CCHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             eeEEEEEecCcccHHHHHHHHHHhcCCceeEEee
Confidence            4788999999999999999999999999998753

>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}

Probab=83.41  E-value=0.96  Score=37.84  Aligned_cols=108  Identities=13%  Similarity=0.096  Sum_probs=66.9

Q ss_pred             CeEEEEEEe---cCCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHHhcc-
Q 017375          181 DYSVVTITS---KDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAIERR-  256 (372)
Q Consensus       181 ~~t~v~V~~---~DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L~~r-  256 (372)
                      +.+.|+|.+   ++.||.++++..+|+++|+||..-.  +...  .-.|.|.+.+        .++++.+.|.. . .. 
T Consensus        17 ~va~Iti~~~~m~~~~g~~~~if~~La~~~I~vd~I~--~s~~--~Isf~v~~~~--------~~~~il~~l~~-~-~~v   82 (157)
T 3mah_A           17 GITVIKVKSSNKLLSWHFMRKLFEIFEFYQEPVDMVA--TSEV--GVSLTIDNDK--------NLPDIVRALSD-I-GDV   82 (157)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHHHTTCCCSCEE--CCSS--EEEEEESCCT--------THHHHHHHHTT-T-EEE
T ss_pred             CEEEEEEEeCCCCCchhHHHHHHHHHHHcCCCEEEEE--ecCC--EEEEEECChH--------HHHHHHHHHhc-c-CeE
Confidence            467888874   5789999999999999999986533  2222  3346664321        12333333322 1 11 


Q ss_pred             --CCCceEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEeecCCeeee-EEEEE
Q 017375          257 --VSEGLKLELCTT---DRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVN-TFYVG  307 (372)
Q Consensus       257 --~~~~t~lev~~~---DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d-~F~v~  307 (372)
                        ...-..+.|.|.   ++||+.+++..+|+  |++|....   +|..... .|.|.
T Consensus        83 ~~~~~~a~vsvvG~gm~~~~gv~a~~f~aL~--~Ini~~is---qg~Se~~is~vv~  134 (157)
T 3mah_A           83 TVDKDMVIICIVGDMEWDNVGFEARIINALK--GVPVRMIS---YGGSNYNVSVLVK  134 (157)
T ss_dssp             EEEEEEEEEEEEC------CCHHHHHHHTTT--TSCCSEEE---ECSSSSCEEEEEE
T ss_pred             EEeCCeEEEEEECCCcccCccHHHHHHHHhC--CCCeEEEe---eCCCCCEEEEEEc
Confidence              123467777765   68999999999999  99988764   4443333 45553

>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}

Probab=81.60  E-value=3.5  Score=38.14  Aligned_cols=54  Identities=6%  Similarity=0.040  Sum_probs=40.5

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEeeCCCCC
Q 017375          181 DYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGSP  235 (372)
Q Consensus       181 ~~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g-~~~~d~F~V~~~~g~~  235 (372)
                      ..|.|.+..+|+||-|+++.+.|+.+|+|+..-.-.-.. +...-.|||. .+|..
T Consensus       199 ~ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD-~eg~~  253 (283)
T 2qmx_A          199 QKTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYAD-FIGHR  253 (283)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEE-EESCT
T ss_pred             ceEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEE-EecCC
Confidence            356777777899999999999999999999876665443 3344557774 56654

>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}

Probab=80.80  E-value=11  Score=35.58  Aligned_cols=54  Identities=11%  Similarity=0.166  Sum_probs=38.1

Q ss_pred             CeEEEEEEec--CCccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEeeCCCCC
Q 017375          181 DYSVVTITSK--DRPKLVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGSP  235 (372)
Q Consensus       181 ~~t~v~V~~~--DrpGLL~~i~~~L~~~glnI~~A~I~T~g-~~~~d~F~V~~~~g~~  235 (372)
                      ..+.+.+..+  |+||-|+++-..|+.+|+|+..-.-.-.. +...-.||| |.+|..
T Consensus       205 ~kts~i~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~Ffi-D~eg~~  261 (329)
T 3luy_A          205 EYESVLTLIPLVTGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIV-TLDAAP  261 (329)
T ss_dssp             CEEEEEEEECSCCSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEE-EESSCT
T ss_pred             CceEEEEEecCCCCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEE-EEeCCc
Confidence            3444444444  79999999999999999999876665544 334455776 456764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	372
d1u8sa1	86	d.58.18.5 (A:2-87) putative transcriptional repres	2e-05
d1y7pa2	77	d.58.18.12 (A:2-78) Hypothetical protein AF1403, N	1e-04
d1u8sa2	93	d.58.18.5 (A:88-180) putative transcriptional repr	2e-04
d1zpva1	83	d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Strepto	4e-04

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Length = 86

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

 Score = 40.2 bits (94), Expect = 2e-05
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 45 SM-DHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVT 95
          S+  H  I   G+DRPG+ +EV  ++T   CN++ + +         LM ++
Sbjct: 1  SLTQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLIS 52

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 77

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 37.8 bits (88), Expect = 1e-04
 Identities = 7/58 (12%), Positives = 22/58 (37%), Gaps = 1/58 (1%)

Query: 49  TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH-NTRAAALMQVTDEETGGAISD 105
             + +   ++ G+L +++ ++     N+  A+ +   +        +  E  GG    
Sbjct: 2   RGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGGDFEK 59

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Length = 93

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

 Score = 37.6 bits (87), Expect = 2e-04
 Identities = 7/54 (12%), Positives = 17/54 (31%), Gaps = 3/54 (5%)

Query: 44 QSMDHTA-IELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTD 96
          Q+  +T  + +   D+ GL  + +      +  + S            L    +
Sbjct: 1  QTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLS--AQTISKDKLHSEQN 52

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]} Length = 83

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 36.7 bits (85), Expect = 4e-04
 Identities = 9/45 (20%), Positives = 19/45 (42%)

Query: 51 IELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVT 95
          I + G D+ G+++ VS  +  L  N+        +     +  V+
Sbjct: 5  ITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVS 49

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	372
d1u8sa1	86	putative transcriptional repressor VC2159 {Vibrio	98.77
d1u8sa1	86	putative transcriptional repressor VC2159 {Vibrio	98.69
d1zpva1	83	UPF0237 protein SP0238 {Streptococcus pneumoniae [	98.52
d1zpva1	83	UPF0237 protein SP0238 {Streptococcus pneumoniae [	98.46
d1u8sa2	93	putative transcriptional repressor VC2159 {Vibrio	98.41
d1u8sa2	93	putative transcriptional repressor VC2159 {Vibrio	98.0
d1ygya3	78	Phosphoglycerate dehydrogenase, regulatory (C-term	97.89
d2f06a1	71	Hypothetical protein BT0572 {Bacteroides thetaiota	97.73
d2f06a1	71	Hypothetical protein BT0572 {Bacteroides thetaiota	97.66
d1y7pa2	77	Hypothetical protein AF1403, N-terminal domain {Ar	97.52
d1ygya3	78	Phosphoglycerate dehydrogenase, regulatory (C-term	97.44
d2f06a2	70	Hypothetical protein BT0572 {Bacteroides thetaiota	97.43
d1y7pa2	77	Hypothetical protein AF1403, N-terminal domain {Ar	97.41
d2f06a2	70	Hypothetical protein BT0572 {Bacteroides thetaiota	97.39
d1sc6a3	84	Phosphoglycerate dehydrogenase, regulatory (C-term	97.06
d2f1fa1	76	Acetolactate synthase small subunit, IlvH {Escheri	97.03
d2pc6a2	77	Acetolactate synthase small subunit, IlvH {Nitroso	97.0
d1sc6a3	84	Phosphoglycerate dehydrogenase, regulatory (C-term	96.92
d2fgca2	78	Acetolactate synthase small subunit, IlvH {Thermot	96.9
d2fgca2	78	Acetolactate synthase small subunit, IlvH {Thermot	96.67
d2f1fa1	76	Acetolactate synthase small subunit, IlvH {Escheri	96.65
d2pc6a2	77	Acetolactate synthase small subunit, IlvH {Nitroso	96.62
d2qmwa2	80	Prephenate dehydratase C-terminal domain {Staphylo	96.07
d1phza1	97	Phenylalanine hydroxylase N-terminal domain {Rat (	95.66
d1phza1	97	Phenylalanine hydroxylase N-terminal domain {Rat (	92.75
d2qmwa2	80	Prephenate dehydratase C-terminal domain {Staphylo	91.23
d2cdqa2	91	Aspartokinase {Thale cress (Arabidopsis thaliana)	86.87
d2hmfa2	67	Aspartokinase {Methanococcus jannaschii [TaxId: 21	84.65
d2cdqa2	91	Aspartokinase {Thale cress (Arabidopsis thaliana)	83.72
d2hmfa3	100	Aspartokinase {Methanococcus jannaschii [TaxId: 21	82.42

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.77  E-value=2.6e-08  Score=75.15  Aligned_cols=69  Identities=25%  Similarity=0.460  Sum_probs=57.9

Q ss_pred             CCCeEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEecCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHhhcC
Q 017375           45 SMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCNVLKG  122 (372)
Q Consensus        45 ~~~~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~L~~  122 (372)
                      ...+.+|+++|+||||++++++++|+++||||.+++.++.++...-.+.|.-+        +..+++|+..|.+ +..
T Consensus         2 m~~~~vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~~~~~~~~~~~~v~~~--------~~~~~~l~~~L~~-l~~   70 (86)
T d1u8sa1           2 LTQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGS--------PSNITRVETTLPL-LGQ   70 (86)
T ss_dssp             CCEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEEC--------HHHHHHHHHHHHH-HHH
T ss_pred             CccEEEEEEEeCCCChHHHHHHHHHHHCCCeEEEeEeEEECCeeEEEEEEEcC--------cccHHHHHHHHHH-HHH
Confidence            45688999999999999999999999999999999999999998888888641        2456788887765 443

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.69  E-value=8.9e-08  Score=72.09  Aligned_cols=66  Identities=21%  Similarity=0.191  Sum_probs=54.5

Q ss_pred             CCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHH
Q 017375          180 KDYSVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAA  252 (372)
Q Consensus       180 ~~~t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~  252 (372)
                      ..+.+|++.|+||||++++++++|+++|+||.+++..+.++.+.-.+.|.-+       +...++|+..|...
T Consensus         3 ~~~~vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~~~~~~~~~~~~v~~~-------~~~~~~l~~~L~~l   68 (86)
T d1u8sa1           3 TQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGS-------PSNITRVETTLPLL   68 (86)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEEC-------HHHHHHHHHHHHHH
T ss_pred             ccEEEEEEEeCCCChHHHHHHHHHHHCCCeEEEeEeEEECCeeEEEEEEEcC-------cccHHHHHHHHHHH
Confidence            3578999999999999999999999999999999999999998877877632       23456666666543

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.52  E-value=3.8e-07  Score=67.95  Aligned_cols=63  Identities=8%  Similarity=0.060  Sum_probs=50.6

Q ss_pred             EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHH
Q 017375          183 SVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKA  251 (372)
Q Consensus       183 t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~  251 (372)
                      ++|++.|+||||+++.++++|+++|+||.+....+.++.+.-.+.+.-+.+.   +   .+.|++.|..
T Consensus         3 ~vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~~~~~~f~~~~~v~~~~~~---~---~~~l~~~l~~   65 (83)
T d1zpva1           3 AIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEKQ---D---FTYLRNEFEA   65 (83)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSCC---C---HHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHCCCeEEEEEeEEeCCEEEEEEEEEEecCC---C---HHHHHHHHHH
Confidence            5899999999999999999999999999999999999888777777644321   1   3456665544

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.46  E-value=4.8e-07  Score=67.40  Aligned_cols=63  Identities=16%  Similarity=0.272  Sum_probs=50.9

Q ss_pred             EEEEEEecCccchHHHHHHHHHhcCceEEEEEEEecCCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017375           49 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTDEETGGAISDPERLSVIKELLCN  118 (372)
Q Consensus        49 t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~  118 (372)
                      ..|+|.|+||||+.+.++++|+++|+||.+...++.++.+.-.+.+.-+ .+  . +   .++|++.|..
T Consensus         3 ~vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~~~~~~f~~~~~v~~~-~~--~-~---~~~l~~~l~~   65 (83)
T d1zpva1           3 AIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSD-EK--Q-D---FTYLRNEFEA   65 (83)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES-SC--C-C---HHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHCCCeEEEEEeEEeCCEEEEEEEEEEe-cC--C-C---HHHHHHHHHH
Confidence            5799999999999999999999999999999999988887777777652 22  2 2   2567777764

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.41  E-value=2.5e-07  Score=70.55  Aligned_cols=67  Identities=13%  Similarity=0.247  Sum_probs=46.3

Q ss_pred             eEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCC----eeeeEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 017375          261 LKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSG----KAVNTFYVGGASGYPVDAKIIDSIRQSIGQ  328 (372)
Q Consensus       261 t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~----~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~  328 (372)
                      ..++|.|+|||||+++||++|+++|+||..+.-.|+..    ...+.|.++-....|-+. .++.|+++|..
T Consensus         7 v~v~v~g~DrpGIV~~it~~la~~~~nI~~l~t~~~~a~~~~~~~~~f~~~~~~~~p~~~-~~~~l~~~l~~   77 (93)
T d1u8sa2           7 VEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDSGC-NLMQLQEEFDA   77 (93)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECTTS-CHHHHHHHHHH
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHcCCCchhhhcccccccCCcccCccEEEEEEEEcCccc-cHHHHHHHHHH
Confidence            56778899999999999999999999999999988754    345678775433223221 24455555543

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.00  E-value=9.6e-06  Score=61.43  Aligned_cols=37  Identities=14%  Similarity=0.001  Sum_probs=33.6

Q ss_pred             EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeC
Q 017375          183 SVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEG  219 (372)
Q Consensus       183 t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g  219 (372)
                      ..|+|.|+|||||+++|+++|+++|+||.+.+..+..
T Consensus         7 v~v~v~g~DrpGIV~~it~~la~~~~nI~~l~t~~~~   43 (93)
T d1u8sa2           7 VEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTIS   43 (93)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHcCCCchhhhccccc
Confidence            4788999999999999999999999999999887753

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.89  E-value=5e-05  Score=55.40  Aligned_cols=63  Identities=16%  Similarity=0.285  Sum_probs=48.0

Q ss_pred             CceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeec--CCeeeeEEEEEcCCCCCCCHHHHHHHHHH
Q 017375          259 EGLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATK--SGKAVNTFYVGGASGYPVDAKIIDSIRQS  325 (372)
Q Consensus       259 ~~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~--g~~~~d~F~v~~~~g~~~~~~~~~~l~~~  325 (372)
                      +++.|-+.-.|+||+|.+|+.+|+++|+||..+.+.+.  |+.+.=++-+    ..+++++.+++|++.
T Consensus         2 eG~~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a~~vi~v----D~~~~~~vl~~I~~~   66 (78)
T d1ygya3           2 QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRL----DQDVPDDVRTAIAAA   66 (78)
T ss_dssp             CSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEE----SSCCCHHHHHHHHHH
T ss_pred             CceEEEEEeCCcCCHHHHHHHHHHhcCcChhhheeeecCCCCeEEEEEEc----CCCccHHHHHHHHcC
Confidence            46788999999999999999999999999999999876  4444444433    236666566666653

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.73  E-value=3.3e-05  Score=55.41  Aligned_cols=47  Identities=15%  Similarity=-0.022  Sum_probs=43.2

Q ss_pred             EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEee
Q 017375          184 VVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRH  230 (372)
Q Consensus       184 ~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~  230 (372)
                      +|.|..+|+||-|++++++|.+.|+||+....+..++.+.-+|.+.|
T Consensus         1 ViaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~~~~~~~~~vl~vdd   47 (71)
T d2f06a1           1 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSN   47 (71)
T ss_dssp             EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEESC
T ss_pred             CEEEEecCCccHHHHHHHHHHHCCCCEEEEEEEcCCCcEEEEEEECC
Confidence            57889999999999999999999999999999999999988888854

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.66  E-value=9.7e-05  Score=52.83  Aligned_cols=47  Identities=15%  Similarity=0.262  Sum_probs=43.0

Q ss_pred             EEEEEecCccchHHHHHHHHHhcCceEEEEEEEecCCceEEEEEEec
Q 017375           50 AIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTHNTRAAALMQVTD   96 (372)
Q Consensus        50 ~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~~~~~~d~F~V~~   96 (372)
                      +|.|..+|+||-|++++++|.++|+||....++...++..-+|.|.+
T Consensus         1 ViaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~~~~~~~~~vl~vdd   47 (71)
T d2f06a1           1 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSN   47 (71)
T ss_dssp             EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEESC
T ss_pred             CEEEEecCCccHHHHHHHHHHHCCCCEEEEEEEcCCCcEEEEEEECC
Confidence            47788999999999999999999999999999998888888888864

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.52  E-value=6.3e-05  Score=54.74  Aligned_cols=49  Identities=20%  Similarity=0.295  Sum_probs=34.9

Q ss_pred             eEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeec-CCee--eeEEEEEcC
Q 017375          261 LKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATK-SGKA--VNTFYVGGA  309 (372)
Q Consensus       261 t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~-g~~~--~d~F~v~~~  309 (372)
                      .-|.|.+.||||+|++|+.+|+++++||..+...+. .+.+  .-.|++.+.
T Consensus         2 ~~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g~~~~~~~i~v~~~   53 (77)
T d1y7pa2           2 RGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIE   53 (77)
T ss_dssp             EEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEEC
T ss_pred             eeEEEEEecCCChHHHHHHHHHHcCCCeEEEEeeccCCCeEEEEEEEEEEcC
Confidence            358899999999999999999999999999988764 3333  445566443

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.44  E-value=0.00053  Score=49.69  Aligned_cols=48  Identities=21%  Similarity=0.360  Sum_probs=40.7

Q ss_pred             CeEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEec--CCceEEEEEE
Q 017375           47 DHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH--NTRAAALMQV   94 (372)
Q Consensus        47 ~~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~--~~~~~d~F~V   94 (372)
                      ..+.+.+.-.|+||.+++|+.+|.++|+||...++.+.  +|.+.-++.+
T Consensus         2 eG~~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a~~vi~v   51 (78)
T d1ygya3           2 QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRL   51 (78)
T ss_dssp             CSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEE
T ss_pred             CceEEEEEeCCcCCHHHHHHHHHHhcCcChhhheeeecCCCCeEEEEEEc
Confidence            35678888999999999999999999999999999873  6666666655

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.43  E-value=0.0003  Score=50.02  Aligned_cols=45  Identities=16%  Similarity=0.287  Sum_probs=39.7

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEE
Q 017375          262 KLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYV  306 (372)
Q Consensus       262 ~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v  306 (372)
                      .+.|...||||.|++|+..|++.|+||.+..+....+.+.-.|-+
T Consensus         5 QisV~~eNkpG~L~~v~~~~~~~~inI~sl~v~~t~~~~i~Riiv   49 (70)
T d2f06a2           5 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIV   49 (70)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEE
T ss_pred             EEEEEEeCCCcHHHHHHHHHHHCCCCEEEEEEeecCCCCEEEEEE
Confidence            478999999999999999999999999999998777777666644

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.41  E-value=5.5e-05  Score=55.08  Aligned_cols=48  Identities=13%  Similarity=0.298  Sum_probs=35.7

Q ss_pred             EEEEEEecCccchHHHHHHHHHhcCceEEEEEEEe-cCCceE--EEEEEec
Q 017375           49 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT-HNTRAA--ALMQVTD   96 (372)
Q Consensus        49 t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T-~~~~~~--d~F~V~~   96 (372)
                      .-|.|.+.||||+|++|+.+|+++|.||......+ .+|.+.  -.+++.+
T Consensus         2 ~~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g~~~~~~~i~v~~   52 (77)
T d1y7pa2           2 RGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEI   52 (77)
T ss_dssp             EEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEE
T ss_pred             eeEEEEEecCCChHHHHHHHHHHcCCCeEEEEeeccCCCeEEEEEEEEEEc
Confidence            45889999999999999999999999999999888 455543  4555654

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.39  E-value=0.00017  Score=51.30  Aligned_cols=46  Identities=7%  Similarity=-0.004  Sum_probs=40.4

Q ss_pred             EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEe
Q 017375          184 VVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIR  229 (372)
Q Consensus       184 ~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~  229 (372)
                      .+.|...||||.|++++++|++.|+||.+..+....+..+-.+.|.
T Consensus         5 QisV~~eNkpG~L~~v~~~~~~~~inI~sl~v~~t~~~~i~Riiv~   50 (70)
T d2f06a2           5 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVS   50 (70)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEES
T ss_pred             EEEEEEeCCCcHHHHHHHHHHHCCCCEEEEEEeecCCCCEEEEEEC
Confidence            6889999999999999999999999999999988777766666554

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=97.06  E-value=0.0019  Score=47.32  Aligned_cols=63  Identities=17%  Similarity=0.319  Sum_probs=46.3

Q ss_pred             ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 017375          260 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQ  328 (372)
Q Consensus       260 ~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~  328 (372)
                      +..|.+.-.|+||+|++|+.+|++.|+||......+.++-+.-+-.+.      .+.+..+++.++|..
T Consensus        11 ~~rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~~~~~~~~a~~~i~------~D~~~~~~v~~~i~~   73 (84)
T d1sc6a3          11 GRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIE------ADEDVAEKALQAMKA   73 (84)
T ss_dssp             SEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEEE------CCHHHHHHHHHHHHT
T ss_pred             CeEEEEEeCCcCCHHHHHHHHHHHcCCCHHHhccccCCCCcEEEEEEE------CCCCCHHHHHHHHHC
Confidence            467888899999999999999999999999999988876654433332      123344555555543

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=97.03  E-value=0.0018  Score=46.52  Aligned_cols=64  Identities=20%  Similarity=0.242  Sum_probs=46.4

Q ss_pred             EEEEEEecCccchHHHHHHHHHhcCceEEEEEEEec-CCceEEEEEEecCCCCCCCCCHHHHHHHHHHHHHh
Q 017375           49 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH-NTRAAALMQVTDEETGGAISDPERLSVIKELLCNV  119 (372)
Q Consensus        49 t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~-~~~~~d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~  119 (372)
                      ..+.++..|+||.|++++++|+..|+||.+-.+.-. +....-+-.|..   |    +++.++.+..+|.+.
T Consensus         2 htlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iSR~tivv~---~----~~~~i~qi~kQL~Kl   66 (76)
T d2f1fa1           2 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV---G----DEKVLEQIEKQLHKL   66 (76)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE---S----CHHHHHHHHHHHHHS
T ss_pred             EEEEEEEECCCcHHHHHHHHHHhcCcceEEEEEcccCCCCeeEEEEEEE---C----CHHHHHHHHHHHhCC
Confidence            357899999999999999999999999999988854 444333222322   2    345667777777653

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=97.00  E-value=0.0018  Score=46.56  Aligned_cols=63  Identities=19%  Similarity=0.215  Sum_probs=47.6

Q ss_pred             EEEEEEecCccchHHHHHHHHHhcCceEEEEEEEe-cCCceE-EEEEEecCCCCCCCCCHHHHHHHHHHHHHh
Q 017375           49 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT-HNTRAA-ALMQVTDEETGGAISDPERLSVIKELLCNV  119 (372)
Q Consensus        49 t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T-~~~~~~-d~F~V~~~~~g~~i~~~~~~~~l~~~L~~~  119 (372)
                      ..|.+...|+||.|++++++|+..|+||.+-.+.- ...... -++.|..        +++.++.+..+|.+.
T Consensus         3 ~tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmtivv~~--------~~~~i~qi~kQL~Kl   67 (77)
T d2pc6a2           3 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNG--------PDEIVEQITKQLNKL   67 (77)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEE--------CHHHHHHHHHHHHHS
T ss_pred             EEEEEEEECCccHHHHHHHHHhccCcceEEEEEeccCCCCeEEEEEEEEC--------CHHHHHHHHHHHhCC
Confidence            46789999999999999999999999999999885 343333 3444442        335667777777754

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=96.92  E-value=0.0048  Score=44.99  Aligned_cols=42  Identities=7%  Similarity=0.104  Sum_probs=36.6

Q ss_pred             EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEE
Q 017375          183 SVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQ  224 (372)
Q Consensus       183 t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d  224 (372)
                      ..+.+.-.|+||.+++|+++|+++|+||.+....+.++...-
T Consensus        12 ~rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~~~~~~~~a   53 (84)
T d1sc6a3          12 RRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYV   53 (84)
T ss_dssp             EEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEE
T ss_pred             eEEEEEeCCcCCHHHHHHHHHHHcCCCHHHhccccCCCCcEE
Confidence            578888899999999999999999999999999887754443

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=96.90  E-value=0.0024  Score=46.06  Aligned_cols=62  Identities=16%  Similarity=0.318  Sum_probs=44.8

Q ss_pred             EEEEEEecCccchHHHHHHHHHhcCceEEEEEEEec-CCceE-EEEEEecCCCCCCCCCHHHHHHHHHHHHH
Q 017375           49 TAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWTH-NTRAA-ALMQVTDEETGGAISDPERLSVIKELLCN  118 (372)
Q Consensus        49 t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T~-~~~~~-d~F~V~~~~~g~~i~~~~~~~~l~~~L~~  118 (372)
                      ..|.+...|+||+|++++++|+..|+||.+-.+... +.... -++.+.    |.   + +..+.+.++|.+
T Consensus         4 ~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tivv~----g~---~-~~i~qi~kQl~K   67 (78)
T d2fgca2           4 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVK----GD---D-KTIEQIEKQAYK   67 (78)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEE----EC---T-THHHHHHHHHTT
T ss_pred             EEEEEEEeCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCeEEEEEEEE----cC---H-HHHHHHHHHHhC
Confidence            578899999999999999999999999999888874 33333 234333    22   2 345666666654

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=96.67  E-value=0.0034  Score=45.19  Aligned_cols=66  Identities=14%  Similarity=0.296  Sum_probs=48.6

Q ss_pred             ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCCHHHHHHHHHHHHHh
Q 017375          260 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQT  329 (372)
Q Consensus       260 ~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~~  329 (372)
                      ...|.+...|+||+|.+|+..|+..|+||.++.+........-.+-++- .|   +++.++++..+|.+.
T Consensus         3 ~~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tivv-~g---~~~~i~qi~kQl~Kl   68 (78)
T d2fgca2           3 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMV-KG---DDKTIEQIEKQAYKL   68 (78)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEE-EE---CTTHHHHHHHHHTTS
T ss_pred             eEEEEEEEeCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCeEEEEEEE-Ec---CHHHHHHHHHHHhCC
Confidence            3578899999999999999999999999999999866554444444432 23   223567777777653

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=96.65  E-value=0.0035  Score=44.91  Aligned_cols=66  Identities=18%  Similarity=0.360  Sum_probs=49.1

Q ss_pred             eEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCeeeeEEEEEcCCCCCCCHHHHHHHHHHHHHhh
Q 017375          261 LKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGKAVNTFYVGGASGYPVDAKIIDSIRQSIGQTI  330 (372)
Q Consensus       261 t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~~~d~F~v~~~~g~~~~~~~~~~l~~~l~~~~  330 (372)
                      ..+.+...|+||+|.+|+..|+..|+||.++.+.-......-.|-++- .|   +++.++++..+|.+.+
T Consensus         2 htlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iSR~tivv-~~---~~~~i~qi~kQL~Kli   67 (76)
T d2f1fa1           2 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQT-VG---DEKVLEQIEKQLHKLV   67 (76)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEE-ES---CHHHHHHHHHHHHHST
T ss_pred             EEEEEEEECCCcHHHHHHHHHHhcCcceEEEEEcccCCCCeeEEEEEE-EC---CHHHHHHHHHHHhCCC
Confidence            357888999999999999999999999999999844444444444432 23   3456788888877643

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=96.62  E-value=0.0046  Score=44.37  Aligned_cols=64  Identities=8%  Similarity=0.107  Sum_probs=47.8

Q ss_pred             EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHH
Q 017375          183 SVVTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEG--PEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAI  253 (372)
Q Consensus       183 t~v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g--~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L  253 (372)
                      ..+.+...|+||.|+++++.|+..|+||.+..+.-..  +..--++.+..       ++..++++...|...+
T Consensus         3 ~tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmtivv~~-------~~~~i~qi~kQL~Klv   68 (77)
T d2pc6a2           3 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNG-------PDEIVEQITKQLNKLI   68 (77)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEE-------CHHHHHHHHHHHHHST
T ss_pred             EEEEEEEECCccHHHHHHHHHhccCcceEEEEEeccCCCCeEEEEEEEEC-------CHHHHHHHHHHHhCCc
Confidence            3678999999999999999999999999999987543  44444454532       2246677777776543

>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Prephenate dehydratase C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.07  E-value=0.016  Score=41.72  Aligned_cols=62  Identities=18%  Similarity=0.205  Sum_probs=44.4

Q ss_pred             EEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCe-eeeEEEEEcCCCCCCCHHHHHHHHHHHHH
Q 017375          264 ELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGK-AVNTFYVGGASGYPVDAKIIDSIRQSIGQ  328 (372)
Q Consensus       264 ev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~-~~d~F~v~~~~g~~~~~~~~~~l~~~l~~  328 (372)
                      -+...|+||-|+++-..|+++|||+.+.+-.-..+. -+=.||| |.+|.. ++ .++.+-++|..
T Consensus         6 i~~~~d~pGaL~~vL~~F~~~~INLt~IeSRP~~~~~~~Y~F~i-d~~g~~-~~-~~~~~l~~L~~   68 (80)
T d2qmwa2           6 ITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFV-QADSAI-TT-DIKKVIAILET   68 (80)
T ss_dssp             EEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEE-EESCCS-CH-HHHHHHHHHHH
T ss_pred             EEeCCCCCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEE-EEecCC-cH-HHHHHHHHHHH
Confidence            344579999999999999999999999998755444 5667888 456753 44 34444444443

>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Phenylalanine hydroxylase N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.66  E-value=0.0091  Score=44.77  Aligned_cols=65  Identities=23%  Similarity=0.357  Sum_probs=48.9

Q ss_pred             ceEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEeecCCe-eeeEEEEEcCCCCCCCHHHHHHHHHHHH
Q 017375          260 GLKLELCTTDRVGLLSNVTRIFRENSLTVTRAEVATKSGK-AVNTFYVGGASGYPVDAKIIDSIRQSIG  327 (372)
Q Consensus       260 ~t~lev~~~DrpGlL~~It~~L~~~gi~I~~a~i~T~g~~-~~d~F~v~~~~g~~~~~~~~~~l~~~l~  327 (372)
                      .|.|-+...|+||-|+++-..|+++|||+.+..-.-.... -.=.||| |..|..  ++.++.+-+.|.
T Consensus        16 ktSl~f~~~~~pGaL~~vL~~f~~~~INLt~IeSRP~~~~~~~Y~F~i-d~eg~~--~~~i~~~l~~L~   81 (97)
T d1phza1          16 AISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFT-YLDKRT--KPVLGSIIKSLR   81 (97)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEE-CBCGGG--HHHHHHHHHHHH
T ss_pred             cEEEEEEeCCCCCHHHHHHHHHHHCCCCEEEEEeeccCCCCceEEEEE-EcccCC--hHHHHHHHHHHH
Confidence            5888888999999999999999999999999988755444 4557888 566752  334444444444

>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Phenylalanine hydroxylase N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.75  E-value=0.16  Score=37.58  Aligned_cols=56  Identities=9%  Similarity=0.028  Sum_probs=42.0

Q ss_pred             CCCCeEEEEEEecCccchHHHHHHHHHhcCceEEEEEEEe-cCCceEEEEEEecCCCCC
Q 017375           44 QSMDHTAIELTGSDRPGLLSEVSAVLTHLKCNVVSAEVWT-HNTRAAALMQVTDEETGG  101 (372)
Q Consensus        44 ~~~~~t~i~v~~~DrpGLl~~i~~~l~~~glnI~~A~I~T-~~~~~~d~F~V~~~~~g~  101 (372)
                      ...+.|.|.+..+|+||-|+++-.+|+.+|+|+..-.-.- .+....-.|||.-  .|.
T Consensus        12 ~~~~ktSl~f~~~~~pGaL~~vL~~f~~~~INLt~IeSRP~~~~~~~Y~F~id~--eg~   68 (97)
T d1phza1          12 NQNGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYL--DKR   68 (97)
T ss_dssp             CSSCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECB--CGG
T ss_pred             CCCCcEEEEEEeCCCCCHHHHHHHHHHHCCCCEEEEEeeccCCCCceEEEEEEc--ccC
Confidence            3456788899999999999999999999999987444333 2444455788853  454

>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Prephenate dehydratase C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=91.23  E-value=0.39  Score=34.00  Aligned_cols=49  Identities=12%  Similarity=0.199  Sum_probs=34.9

Q ss_pred             EEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEeeCCCC
Q 017375          185 VTITSKDRPKLVFDTVCTLTDMQYVVFHANIDAEG-PEAYQEYFIRHIDGS  234 (372)
Q Consensus       185 v~V~~~DrpGLL~~i~~~L~~~glnI~~A~I~T~g-~~~~d~F~V~~~~g~  234 (372)
                      +.+...|+||-|+++-+.|+++|+|+.+-.-.-.. ....-.|||. -+|.
T Consensus         5 ~i~~~~d~pGaL~~vL~~F~~~~INLt~IeSRP~~~~~~~Y~F~id-~~g~   54 (80)
T d2qmwa2           5 LITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQ-ADSA   54 (80)
T ss_dssp             EEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEE-ESCC
T ss_pred             EEEeCCCCCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEE-EecC
Confidence            34445799999999999999999999876655433 2233347775 3565

>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.87  E-value=0.48  Score=34.35  Aligned_cols=33  Identities=27%  Similarity=0.434  Sum_probs=29.6

Q ss_pred             ceEEEEEe---CCCcchHHHHHHHHHhCCceEEEEE
Q 017375          260 GLKLELCT---TDRVGLLSNVTRIFRENSLTVTRAE  292 (372)
Q Consensus       260 ~t~lev~~---~DrpGlL~~It~~L~~~gi~I~~a~  292 (372)
                      -+.+.|.+   .++||++++|..+|++.||+|....
T Consensus        13 ia~i~v~g~~m~~~~G~~a~if~~La~~~Inv~~Is   48 (91)
T d2cdqa2          13 VTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVA   48 (91)
T ss_dssp             EEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEEEEEeCCCCCCccHHHHHHHHHHHcCCcEEEEE
Confidence            36788886   4999999999999999999999986

>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=84.65  E-value=2  Score=28.91  Aligned_cols=45  Identities=4%  Similarity=0.087  Sum_probs=32.9

Q ss_pred             EEEEEe---cCCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEee
Q 017375          184 VVTITS---KDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRH  230 (372)
Q Consensus       184 ~v~V~~---~DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~  230 (372)
                      .|.+.+   .++||+.+++..+|++.|+||..-...+..  .--.|.|.+
T Consensus         3 ~vsvvG~gm~~~~gi~arif~~L~~~~InV~mIsq~~Se--~~Is~~V~~   50 (67)
T d2hmfa2           3 VISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSSE--VNISFVIDE   50 (67)
T ss_dssp             EEEEECTTTTTCTTHHHHHHHHHHHTTCCCCEEEESSCS--SEEEEEEEG
T ss_pred             EEEEEeCCCCCCccHHHHHHHHHHHcCCChHHeeecCcc--ceEEEEEeH
Confidence            566776   689999999999999999999864433332  333466754

>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.72  E-value=0.58  Score=33.89  Aligned_cols=34  Identities=9%  Similarity=0.145  Sum_probs=30.3

Q ss_pred             CeEEEEEEec---CCccHHHHHHHHHHhCCceEEEEE
Q 017375          181 DYSVVTITSK---DRPKLVFDTVCTLTDMQYVVFHAN  214 (372)
Q Consensus       181 ~~t~v~V~~~---DrpGLL~~i~~~L~~~glnI~~A~  214 (372)
                      +.+.|+|.+.   ++||+++++..+|+++|+||..-.
T Consensus        12 ~ia~i~v~g~~m~~~~G~~a~if~~La~~~Inv~~Is   48 (91)
T d2cdqa2          12 NVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVA   48 (91)
T ss_dssp             EEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEE
T ss_pred             CEEEEEEEeCCCCCCccHHHHHHHHHHHcCCcEEEEE
Confidence            4688999874   999999999999999999998764

>d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=82.42  E-value=1.5  Score=32.02  Aligned_cols=62  Identities=8%  Similarity=0.119  Sum_probs=43.0

Q ss_pred             CeEEEEEEe---cCCccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeeCCCCCCCCHHHHHHHHHHHHHHH
Q 017375          181 DYSVVTITS---KDRPKLVFDTVCTLTDMQYVVFHANIDAEGPEAYQEYFIRHIDGSPVKSDAERERVIQCLKAAI  253 (372)
Q Consensus       181 ~~t~v~V~~---~DrpGLL~~i~~~L~~~glnI~~A~I~T~g~~~~d~F~V~~~~g~~~~~~~~~e~l~~~L~~~L  253 (372)
                      +...|++.+   +++||+.+++..+|++.|+||..-...+..  .--.|.|.+         +..++..+.|.+.+
T Consensus        14 nva~IsivG~~m~~~~Gi~arif~~La~~~InV~mIsQ~~Se--~~Isf~V~~---------~d~~~a~~~L~~~f   78 (100)
T d2hmfa3          14 NVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSE--TNISLVVSE---------EDVDKALKALKREF   78 (100)
T ss_dssp             EEEEEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEEECCTT--CCEEEEECS---------TTHHHHHHHHHHHH
T ss_pred             CEEEEEEECCCCCCCcchHHHHHHHHHHcCCCHHHeeccCCc--ceEEEEEeH---------HHHHHHHHHHHHHH
Confidence            467899987   699999999999999999999875443322  233466642         13345555566555