Citrus Sinensis ID: 017381
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 372 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FHS6 | 403 | F-box/kelch-repeat protei | yes | no | 0.922 | 0.851 | 0.520 | 2e-86 | |
| Q9LFV5 | 448 | F-box/kelch-repeat protei | no | no | 0.854 | 0.709 | 0.299 | 2e-30 | |
| Q39090 | 442 | Protein UNUSUAL FLORAL OR | no | no | 0.873 | 0.735 | 0.25 | 4e-20 | |
| Q9FZK1 | 467 | F-box only protein 6 OS=A | no | no | 0.833 | 0.663 | 0.265 | 8e-18 | |
| Q9M310 | 411 | F-box/kelch-repeat protei | no | no | 0.841 | 0.761 | 0.226 | 2e-09 | |
| Q9SMZ3 | 457 | F-box only protein 13 OS= | no | no | 0.852 | 0.693 | 0.246 | 4e-09 | |
| Q9LT21 | 389 | F-box protein At3g19880 O | no | no | 0.448 | 0.429 | 0.252 | 5e-06 | |
| Q9FGY4 | 359 | F-box protein At5g49610 O | no | no | 0.647 | 0.671 | 0.241 | 9e-06 | |
| Q9LJ74 | 388 | F-box protein At3g18910 O | no | no | 0.561 | 0.538 | 0.273 | 7e-05 | |
| Q9LUP4 | 396 | Putative F-box/kelch-repe | no | no | 0.653 | 0.613 | 0.246 | 0.0002 |
| >sp|Q9FHS6|FK119_ARATH F-box/kelch-repeat protein At5g43190 OS=Arabidopsis thaliana GN=At5g43190 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 319 bits (817), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 187/359 (52%), Positives = 238/359 (66%), Gaps = 16/359 (4%)
Query: 7 EMDPAIWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSFLSKTKCSSSAFSCF 66
+DP IWS LP LL+H+LS LP K LL LRS +H SL+ SPSF+S S + F
Sbjct: 42 NLDPNIWSNLPNHLLEHILSLLPFKTLLTLRSISRHLRSLILSPSFISD---HSFSLPSF 98
Query: 67 ILLSHPQCYDQYPLYDSTHGTWRRLSLPYSLLLPSAATLLSSSKGLLCFSLPSSSSFL-- 124
+LLSHPQ ++ +PL++ +W L LP SL L A++LLSSS GLLCFSL SS
Sbjct: 99 LLLSHPQSFNSFPLFNPNLISWCTLPLPRSLSLTCASSLLSSSNGLLCFSLSPSSVSSLS 158
Query: 125 VCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFML---FAKSFPNYAFVYDSTDQSW 181
+ N +T SSR+I P YPF FELL+LV++P GYKIF L + + +YDS D+SW
Sbjct: 159 IFNPLTRSSRSIKLPCYPFPFELLSLVTSPKGYKIFTLCSSSSAASSRSVCLYDSGDRSW 218
Query: 182 SKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTM 241
KF G +L + +Q+GVFY GSLYF EPF IV DL +G W T A
Sbjct: 219 RKF---GGVDQVLPRGFNQDGVFYNGSLYFARSEPFLIVSVDLNDGKWTT---ATGDGVF 272
Query: 242 MLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGG-NWIEVERVPEMMCR 300
E+TF RLV+D E+ LY++GG+G NGI ++K+WE +WIEVE +P+++CR
Sbjct: 273 PADDEITFARLVSDPEK-KILYMVGGIGSNGICRSIKIWEFKEETESWIEVETLPDIVCR 331
Query: 301 KFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRTWHWLPSCPSLPHKWSCGF 359
KF SVCYHNY+HVYC WH+ MICVCCY WPEIL+++V RRTWHW+P CPSLP KWSCGF
Sbjct: 332 KFTSVCYHNYEHVYCLWHKEMICVCCYNWPEILFFHVGRRTWHWVPKCPSLPEKWSCGF 390
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFV5|FK111_ARATH F-box/kelch-repeat protein At5g15710 OS=Arabidopsis thaliana GN=At5g15710 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 133 bits (334), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 106/354 (29%), Positives = 167/354 (47%), Gaps = 36/354 (10%)
Query: 7 EMDPAIWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSFLSKTKCSSSAFSCF 66
+M+ IW+ LPEDLL+ +L+ +PP M+ ++RS CK +N +L SFL SS C
Sbjct: 98 QMEDGIWAMLPEDLLNEILARVPPFMIFRIRSVCKKWNLILQDNSFLKFHSNVSSHGPCL 157
Query: 67 ILL--SHPQCYDQYPLYDSTHGTWRRLSLPYSLLLPSAATLLSSSKGLLCFSLPSSSSF- 123
+ + PQ Q ++ TW + +P++ L P A L+ SS GL+CFS +F
Sbjct: 158 LTFWKNSPQ-IPQCSVFSLPLKTWYK--IPFTFLPPWAFWLVGSSGGLVCFSGLDGLTFR 214
Query: 124 -LVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFA-------KSFPNYAFVYD 175
LVCN + S RT+ Y +L+ +V K F + A KS P VYD
Sbjct: 215 TLVCNPLMQSWRTLPSMHYNQQRQLIMVVDRSD--KSFKVIATSDIYGDKSLPTE--VYD 270
Query: 176 STDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWETPNDA 235
S WS I P++ L S + LY T P ++ + L++G WE
Sbjct: 271 SKTDKWSLHQI--MPAVNLCSSKM---AYCDSRLYLETLSPLGLMMYRLDSGQWE----- 320
Query: 236 NDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELG-CGGNWIEVERV 294
H+ P L LV ++ +L+L+G +G +M++WEL +W+E+ R+
Sbjct: 321 --HIPAKFPRSLLDGYLVAGTQK--RLFLVGRIGLYSTLQSMRIWELDHTKVSWVEISRM 376
Query: 295 PEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRTWHWLPSC 348
P R + + ++ CF +IC + + L YNV ++ W W+ C
Sbjct: 377 PPKYFRALLRLSAERFE---CFGQDNLICFTSWNQGKGLLYNVDKKIWSWISGC 427
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q39090|UFO_ARATH Protein UNUSUAL FLORAL ORGANS OS=Arabidopsis thaliana GN=UFO PE=1 SV=2 | Back alignment and function description |
|---|
Score = 99.4 bits (246), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 93/372 (25%), Positives = 157/372 (42%), Gaps = 47/372 (12%)
Query: 8 MDPAIWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSFLSK-TKCSSSAFSCF 66
MD IWS+LP LLD V++FLPP + R CK F SLLFS +FL + +CF
Sbjct: 42 MDGRIWSKLPPPLLDRVIAFLPPPAFFRTRCVCKRFYSLLFSNTFLETYLQLLPLRHNCF 101
Query: 67 ILLSHPQCYD----------------QYPLYDSTHGTWRRLSLPYSLLLPSAATLLSSSK 110
+ H + L+D W RLS Y +PS SS
Sbjct: 102 LFFKHKTLKSYIYKRGGTNDDDSNKAEGFLFDPNEIRWYRLSFAY---IPSGFYPSGSSG 158
Query: 111 GLLCFSLPSSS--SFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFP 168
GL+ + + + L+CN + S + + P F + L TP+ + +
Sbjct: 159 GLVSWVSEEAGLKTILLCNPLVGSVSQLPPISRPRLFPSIGLSVTPTSIDVTVAGDDLIS 218
Query: 169 NYAFVYDSTDQSWSKFDIDGFPSMILSQSS--------HQEGVFYKGSLYFTTPEPFSIV 220
YA V + + +S+ D GF S+ SS + V+ +G Y PFS++
Sbjct: 219 PYA-VKNLSSESF-HVDAGGFFSLWAMTSSLPRLCSLESGKMVYVQGKFYCMNYSPFSVL 276
Query: 221 RFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGIST--TMK 278
+++ W + + P F R + E +L L+ V ++ ++ +++
Sbjct: 277 SYEVTGNRW---------IKIQAPMR-RFLRSPSLLESKGRLILVAAVEKSKLNVPKSLR 326
Query: 279 LWELGC-GGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNV 337
LW L W+E+ER+P+ + +F + C +Q + + L +++
Sbjct: 327 LWSLQQDNATWVEIERMPQPLYTQFAA--EEGGKGFECVGNQEFVMIVLRGTSLQLLFDI 384
Query: 338 ARRTWHWLPSCP 349
R++W W+P CP
Sbjct: 385 VRKSWLWVPPCP 396
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Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Considered as a meristem identity factor required for normal growth of the young floral meristem. Acts together with LEAFY to positively regulate the B class floral homeotic genes APETALA3 and PISTILLATA. In this way, operates as a region-specific regulator for petal and stamen development. Alternatively, may play a role as a negative regulator of the C class floral homeotic genes. Interacts together with the SKP1-like protein ASK1 to form a ubiquitin E3 ligase complex and could indirectly promote the ubiquitination and degradation of specific proteins controlling the floral primordia development like repressors of B class floral homeotic genes. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FZK1|FBX6_ARATH F-box only protein 6 OS=Arabidopsis thaliana GN=FBX6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 91.7 bits (226), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 96/362 (26%), Positives = 156/362 (43%), Gaps = 52/362 (14%)
Query: 8 MDPAIWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSFLSKTKCSSSAFSCFI 67
MD IW P+DL + V+S LP + R+ C+ +N+L+ S SF F
Sbjct: 112 MDQEIWQEFPQDLFEDVVSRLPMATFFQFRAVCRKWNALIDSDSFSRCFTELPQTIPWFY 171
Query: 68 LLSHPQCYDQYPLYDSTHGTWRRLSLPYSLLLPSAATLL--SSSKGLLCFSLPSSSSFLV 125
++H + + +YD + W +P LP + +L +S+ GL+CF +F V
Sbjct: 172 TITH-ENVNSGQVYDPSLKKWHHPIIPA---LPKKSIVLPMASAGGLVCFLDIGHRNFYV 227
Query: 126 CNLVTLSSRTIDFPTYPFDFELLTLV-------STPSGYKIFMLFAKSFPNYAFVYDSTD 178
N +T S R + P F V ST GYK+ + + Y VYDS
Sbjct: 228 SNPLTKSFR--ELPARSFKVWSRVAVGMTLNGNSTSHGYKVLWVGCEG--EYE-VYDSLS 282
Query: 179 QSWSKFDIDGFPSMI---LSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWET---- 231
W+K PS I + + + V +LYF +P I+ +D+ +G W+
Sbjct: 283 NVWTKRGT--IPSNIKLPVLLNFKSQPVAIHSTLYFMLTDPEGILSYDMVSGKWKQFIIP 340
Query: 232 -PNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWEL-GCGGNWI 289
P D +DH L GE +L L+G + +N +T + +WEL W
Sbjct: 341 GPPDLSDHT------------LAACGE---RLMLVGLLTKNA-ATCVCIWELQKMTLLWK 384
Query: 290 EVERVPEMMCRKFMSVCYHNYDHVYCFWHQG---MICVCCYTWPEILYYNVARRTWHWLP 346
EV+R+P + C +F Y + + C ++G ++ + ++ YN R W +P
Sbjct: 385 EVDRMPNIWCLEF----YGKHIRMNCLGNKGCLILLSLRSRQMNRLITYNAVTREWTKVP 440
Query: 347 SC 348
C
Sbjct: 441 GC 442
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M310|FBK77_ARATH F-box/kelch-repeat protein At3g61590 OS=Arabidopsis thaliana GN=At3g61590 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 84/371 (22%), Positives = 150/371 (40%), Gaps = 58/371 (15%)
Query: 14 SRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSFLSKTKCSSSA----FSCFILL 69
S LP+DLL+ +LSFLP + + + CK +N ++ S FL +S + + F
Sbjct: 41 SLLPDDLLERILSFLPIASIFRAGTVCKRWNEIVSSRRFLCNFSNNSVSQRPWYFMFTTT 100
Query: 70 SHPQCYDQYPLYDSTHGTWRRLSLPYSLLLPSAATLLSSSKGLLCF-SLPSSSSFLVCNL 128
P Y YD W LP + ++ ++SS GL+CF + V N
Sbjct: 101 DDPSGY----AYDPIIRKWYSFDLP---CIETSNWFVASSCGLVCFMDNDCRNKIYVSNP 153
Query: 129 VTLSSRTIDFPT--YPFDFELLT---------LVSTPSGYKIFMLFAKSFPNYAF----- 172
+T RT+ P D+ ++ + Y + ++ +K P F
Sbjct: 154 ITKQWRTLIEPPGHKSTDYTAMSTSVNRANQAVNRANRSYSVSIVKSKQVPGNFFQWDLS 213
Query: 173 --VYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWE 230
+Y S +W+ D ++ E V LYF +S D +G+
Sbjct: 214 IHLYSSETMTWTTLVND----VLSGWRGGNESVICNNVLYFMI---YSTGGSDHRHGLIA 266
Query: 231 T---PNDANDHMTMM-----LPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMK---L 279
+ + +M +P LT RL+N E +L ++GG+G++ +K +
Sbjct: 267 SNLSSIGSPSSGILMRSFIPMPCSLTCGRLMNLRE---RLVIVGGIGKHDRPEVIKGIGI 323
Query: 280 WELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYC-FWHQGMICVCCYTWPEILYYNVA 338
W L G W+E+ ++P+ + F +D V+ ++ + Y P +L +++
Sbjct: 324 WVLK-GKEWVEMAKMPQRFFQGF-----GEFDEVFASSGTDDLVYIQSYGSPALLTFDMN 377
Query: 339 RRTWHWLPSCP 349
+ W W CP
Sbjct: 378 LKYWRWSQKCP 388
|
Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SMZ3|FBX13_ARATH F-box only protein 13 OS=Arabidopsis thaliana GN=FBX13 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 94/381 (24%), Positives = 159/381 (41%), Gaps = 64/381 (16%)
Query: 16 LPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSFLSKTKCSS--SAFSCFILLSHPQ 73
L +D+L+ VLS+LP ++ S CK + S S SF K CS + F ++ +
Sbjct: 70 LNDDVLERVLSWLPTSCFFRMSSVCKRWKSSQTSKSF--KLACSQIPTRDPWFFMIDNDS 127
Query: 74 CYDQYPLYDSTHGTWRRLSLPYSLLLPSAATL-LSSSKGLLCFSLPSSSSFLVCNLVTLS 132
+ ++DST +W+ L+ L + ++SS GLLC+ S FL+ N +T S
Sbjct: 128 NSSSF-VFDSTENSWKNLNRRDFLHHHRQDFIPVASSGGLLCYRCSISGDFLLRNPLTGS 186
Query: 133 SRTIDFPTYPFD-------FELLTLVSTPSGYKIFMLFAKSFPNYAF-VYDSTDQSWSKF 184
SR D P+ + + T TPS Y + + + PN +F +Y+S SWSK
Sbjct: 187 SR--DIPSQDNNNNKPLQAVAMTTTTVTPSSYTLVTI-SGEIPNLSFKIYESNADSWSK- 242
Query: 185 DIDGFPSMILSQSS-HQEGVFYKGSLYFTTPEPFSIVRFDLENGIWETPNDA-NDHMTMM 242
S+ + SS H + G++YF + + +V N + +P+ + +T+
Sbjct: 243 -DQELESVKNNDSSLHDDYDTDSGTVYFLSKQGNVVV---ASNNLQRSPSKQYSSVITVT 298
Query: 243 LPHELTFFRLVNDG------------EESNKL------YLIGGVGRNGI----------- 273
E+ +F L + G E KL Y I V G
Sbjct: 299 DEAEIVYF-LSSYGTIVACDLTKRCFTELPKLLPPFLEYSIDLVECEGTMYVILLSEFFE 357
Query: 274 STTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTW--PE 331
S ++++W L W++V +P + + Y + C G + C+ PE
Sbjct: 358 SASLRIWRLDNNREWVQVGMLPPALSHEL----YGKKGDINCVGGAGNKILVCFNASPPE 413
Query: 332 I----LYYNVARRTWHWLPSC 348
+ Y++ W+ LP C
Sbjct: 414 VYCRYFVYDLVAEEWNELPKC 434
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LT21|FB165_ARATH F-box protein At3g19880 OS=Arabidopsis thaliana GN=At3g19880 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 75/174 (43%), Gaps = 7/174 (4%)
Query: 14 SRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSFLSKTKCSSSAFSCFILLSHPQ 73
S L +DL++ +LS +P L +RSTCK +N+L S + F F++L +
Sbjct: 5 SDLTQDLVEEILSRVPITSLGAVRSTCKGWNAL--SKERILCIGEPKQQFLGFMMLDYRL 62
Query: 74 CYDQYPLYDSTHGTWRRLSLPYSLLLPSAATLLSSSKGLLCFSLPSSSSFLVCNLVTLSS 133
C ++ L HG + S+ + + + LLC + SS ++ N +
Sbjct: 63 CSMRFNL----HGILNEDFVSISMYQVETSQVFYCAGLLLCVTREKSSRLIIWNPYLGQT 118
Query: 134 RTIDFPTYPFDFELLTL-VSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDI 186
R I+ T + L +KI +F + Y +YD SWS F++
Sbjct: 119 RWINTKTTKTGYNTYALGCDNNKNHKILKVFCDDYQCYYEIYDVKSNSWSAFNV 172
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FGY4|FB341_ARATH F-box protein At5g49610 OS=Arabidopsis thaliana GN=At5g49610 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 51.6 bits (122), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 75/310 (24%), Positives = 120/310 (38%), Gaps = 69/310 (22%)
Query: 8 MDPAIWSRLPEDLLDHVLSFLPPKMLLKLRSTCKH-------------FNSLLFSPSFLS 54
MD + P++++ +L+ LP K L + +S CK FN L L
Sbjct: 1 MDNQKGALFPDEVILQILARLPVKSLFRFKSVCKSWYRLPSDKYFTSLFNQLSVKEQLLV 60
Query: 55 KTKCSSSAFSCFILLSHPQCYDQYPLYDSTHGTWRRLSLPYSLLLPSAATLLSSSKGLL- 113
SS+ C D+ G LSL + + + SS GLL
Sbjct: 61 AEVSDSSSLICV---------------DNLRGV-SELSLDF---VRDRVRIRVSSNGLLC 101
Query: 114 CFSLPSSSSFLVCNLVTLSSRTI----DFPTYPF----DFELLTLVSTPSGYKIFMLFA- 164
C S+P + VCN T R + + P F + L+ L S K ++ A
Sbjct: 102 CSSIPEKGVYYVCNPSTREYRKLPKSRERPVTRFYPDGEATLVGLACDLSKNKFNVVLAG 161
Query: 165 --KSF---PNYAF---VYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEP 216
+SF P+ +F V+DS W KF + + S + VF G L++
Sbjct: 162 YHRSFGQRPDGSFICLVFDSESNKWRKF-VSVLEECSFTHMSKNQVVFVNGMLHWLMSGL 220
Query: 217 FSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGI--- 273
I+ D+E+ +W + LP E+ R+ N G N++YL+ G +
Sbjct: 221 CYILALDVEHDVWR---------KISLPDEI---RIGNGG--GNRVYLLESDGFLSVIQL 266
Query: 274 -STTMKLWEL 282
MK+W++
Sbjct: 267 SDVWMKIWKM 276
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LJ74|FB161_ARATH F-box protein At3g18910 OS=Arabidopsis thaliana GN=At3g18910 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 95/238 (39%), Gaps = 29/238 (12%)
Query: 10 PAIWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSFLSKTKCSSSAFSCFILL 69
I +LP DL++ +L +P L +LRSTCK +N L L+ SA F L
Sbjct: 2 KTIQEQLPNDLVEEILCRVPATSLRRLRSTCKAWNRLFKGDRILASKHFEKSA-KQFRSL 60
Query: 70 SHPQCYDQYPLYDSTHGTWRRLSLPYSLLLP----SAA-----TLLSSSKGLLCFSLPSS 120
S Y +P+ + HG L L L+ P SAA ++ LLC S
Sbjct: 61 SLRNDYRIFPISFNLHGNSPSLELKSELIDPHSKNSAAPFEISRVIHCEGLLLCSSQLDE 120
Query: 121 SSFLVCNLVTLSS---RTIDFPTYPFDFEL-----LTLVSTPSGYKIFMLFAKSFPNYAF 172
S +V N +T + RT DF F++ S YK+ + + Y
Sbjct: 121 SRVVVWNPLTGETRWIRTGDFRQKGRSFDVGYYYQKDKRSWIKSYKLLCYYRGT--KYFE 178
Query: 173 VYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYF-------TTPEPFSIVRFD 223
+YD SW D P + S + V KG+ Y+ P S+++FD
Sbjct: 179 IYDFDSDSWRILDDIIAPRGSIGYS--ELSVSLKGNTYWFAKGVTEERPRTISLLKFD 234
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LUP4|FBK60_ARATH Putative F-box/kelch-repeat protein At3g17540 OS=Arabidopsis thaliana GN=At3g17540 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 74/300 (24%), Positives = 122/300 (40%), Gaps = 57/300 (19%)
Query: 12 IWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSFLSKTKCSSSAFSCFILLSH 71
+ S LP ++ +LS +P K L KL +TCK + +L P F+ K S L+ H
Sbjct: 6 VISDLPHEIESEILSRVPTKSLAKLHTTCKRWYALFRDPRFVKKNFGKSERR----LMLH 61
Query: 72 PQCYDQYPLYDSTHGTWRRL--SLPYSLLLPS-------AATLLSSSKGLLCFSLPSSSS 122
+ Y + D HG SL ++ L + T + GL+ S ++
Sbjct: 62 SN-FGVYKITDDLHGILNSGDPSLEFTSKLSNLKISEDLTITKIFHCDGLILCSTKENTR 120
Query: 123 FLVCNLVTLSSRTIDFPTYPF---DFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQ 179
+V N T +R I P+ + D L V++ S Y + + Y F Y+ D
Sbjct: 121 LVVWNPCTGQTRWIK-PSKRYRSDDSYCLGYVNSKSSYHNYKIL-----RYCFYYNDQDA 174
Query: 180 SWSKFDIDGFPS---MILSQSSHQE------GVFYKGSLYFTTPEP---FSIVRFDLENG 227
S+F+I F S +L +E G+ KG+ YF E F ++ FD +
Sbjct: 175 CVSEFEIYDFSSESWRVLDDYCTREWGLFCHGMSLKGNTYFVAGEKETGFFMLYFDFKTE 234
Query: 228 IWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGG-------VGRNGISTTMKLW 280
+E + LP++ +F D E++ L ++GG S M++W
Sbjct: 235 RFE---------RLPLPYQ-SF-----DSEDTAVLSIVGGEKLAVLHQNIQSFSNEMRIW 279
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 372 | ||||||
| 224063447 | 374 | predicted protein [Populus trichocarpa] | 0.916 | 0.911 | 0.663 | 1e-126 | |
| 224127272 | 373 | f-box family protein [Populus trichocarp | 0.916 | 0.914 | 0.647 | 1e-121 | |
| 302142199 | 521 | unnamed protein product [Vitis vinifera] | 0.919 | 0.656 | 0.621 | 1e-111 | |
| 225458836 | 372 | PREDICTED: F-box/kelch-repeat protein At | 0.919 | 0.919 | 0.621 | 1e-111 | |
| 449450281 | 350 | PREDICTED: F-box/kelch-repeat protein At | 0.897 | 0.954 | 0.597 | 1e-111 | |
| 356577799 | 359 | PREDICTED: F-box/kelch-repeat protein At | 0.911 | 0.944 | 0.582 | 1e-108 | |
| 357437601 | 382 | F-box/kelch-repeat protein [Medicago tru | 0.930 | 0.905 | 0.570 | 4e-99 | |
| 356509767 | 376 | PREDICTED: F-box/kelch-repeat protein At | 0.913 | 0.904 | 0.567 | 7e-86 | |
| 18422304 | 403 | F-box/kelch-repeat protein [Arabidopsis | 0.922 | 0.851 | 0.520 | 1e-84 | |
| 297791597 | 403 | F-box family protein [Arabidopsis lyrata | 0.922 | 0.851 | 0.515 | 2e-83 |
| >gi|224063447|ref|XP_002301149.1| predicted protein [Populus trichocarpa] gi|222842875|gb|EEE80422.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust.
Identities = 239/360 (66%), Positives = 270/360 (75%), Gaps = 19/360 (5%)
Query: 7 EMDPAIWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSFLSKTKCSSSAFSCF 66
EMDPAIWSRLPE+LL+HVLS LP K LL LRSTCK F SL+FSPSF+SK +AFS F
Sbjct: 14 EMDPAIWSRLPEELLEHVLSCLPLKTLLNLRSTCKRFKSLMFSPSFMSKHTTRGTAFSSF 73
Query: 67 ILLSHPQCYDQYPLYDSTHGTWRRLSLPYSLLLPSAAT-------LLSSSKGLLCFSLPS 119
+LLSHPQ Y Q+PLYDS G+WR L+L S LLP + LLSSS GL CFSLPS
Sbjct: 74 LLLSHPQFYQQFPLYDSIIGSWRHLALSLSFLLPVTGSNGSPSCSLLSSSNGLFCFSLPS 133
Query: 120 SSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQ 179
S+SFLVCN + SSR ++FP+YPF FE L VS P GYKIF+L +K N FVYDS
Sbjct: 134 SNSFLVCNFLAKSSRIVEFPSYPFAFESLAFVSMPFGYKIFVLCSKFSSNSVFVYDSKVH 193
Query: 180 SWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWETPNDANDHM 239
SW KFD IL + QEGVF+ GSLYFTT EPFSIV FDLE+G WE ++
Sbjct: 194 SWQKFDRF---EPILGDNYRQEGVFFNGSLYFTTSEPFSIVCFDLESGRWERLDNE---- 246
Query: 240 TMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMC 299
LP +LTF RLV+DGE NKLYLIGGVGRNGIS +MKLWELG G NWIEVE +PEMMC
Sbjct: 247 ---LPGDLTFVRLVSDGE--NKLYLIGGVGRNGISRSMKLWELGDGRNWIEVESLPEMMC 301
Query: 300 RKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRTWHWLPSCPSLPHKWSCGF 359
+KF+SVCYHNY+ VYCFWHQGMIC+CCYTWPEILY V+RRTWHWLP CPSLP KWSCGF
Sbjct: 302 KKFVSVCYHNYERVYCFWHQGMICICCYTWPEILYCKVSRRTWHWLPKCPSLPEKWSCGF 361
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224127272|ref|XP_002320031.1| f-box family protein [Populus trichocarpa] gi|222860804|gb|EEE98346.1| f-box family protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 233/360 (64%), Positives = 266/360 (73%), Gaps = 19/360 (5%)
Query: 7 EMDPAIWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSFLSKTKCSSSAFSCF 66
EMDPAIWSRLPE+LL+HVLSFLP KM L LRST KHF SLLFSPSF+SK S S FS F
Sbjct: 13 EMDPAIWSRLPEELLEHVLSFLPLKMFLNLRSTSKHFKSLLFSPSFMSKHTASGSPFSSF 72
Query: 67 ILLSHPQCYDQYPLYDSTHGTWRRLSLPYSLLLPSAA-------TLLSSSKGLLCFSLPS 119
+LLSHPQ + Q+PLYDS G+WR L+L SLLLP TLLSSS GL+CFSLPS
Sbjct: 73 LLLSHPQFFQQFPLYDSIVGSWRNLALSLSLLLPGTGSNASPSCTLLSSSNGLICFSLPS 132
Query: 120 SSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQ 179
S S LVCN + SSR ++FP++PF FE VS GYKIF+L +K N FVYDS
Sbjct: 133 SCSLLVCNFMAKSSRIVEFPSHPFTFESFVFVSMSFGYKIFVLCSKFSSNSVFVYDSKVH 192
Query: 180 SWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWETPNDANDHM 239
SW KFD IL + QEGVF+ GSLYFTT EPFSIV FDLE+G W ++
Sbjct: 193 SWQKFDRF---EPILGDNYRQEGVFFNGSLYFTTSEPFSIVCFDLESGRWGRLDNE---- 245
Query: 240 TMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMC 299
LP ++TF RLV+DGE+ KLYLIGGVGRNGIS +MKLWEL NWIEVE +PEMMC
Sbjct: 246 ---LPGDVTFVRLVSDGEK--KLYLIGGVGRNGISRSMKLWELDGERNWIEVESLPEMMC 300
Query: 300 RKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRTWHWLPSCPSLPHKWSCGF 359
+KF+SVCYHNY+ VYCF H+GMIC+CCYTWPEILYY V+RRTWHWLP CPSLP KWSCGF
Sbjct: 301 KKFLSVCYHNYERVYCFLHEGMICICCYTWPEILYYKVSRRTWHWLPKCPSLPEKWSCGF 360
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302142199|emb|CBI19402.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 228/367 (62%), Positives = 263/367 (71%), Gaps = 25/367 (6%)
Query: 4 KRREMDPAIWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSFLSK------TK 57
K +EMDP IW LP +LL+HVLSFLP K L TCK F SL++SPSFL+K +
Sbjct: 143 KSQEMDPGIWGHLPVELLEHVLSFLPLKSFFNLLCTCKRFKSLIYSPSFLAKYSPSSSSS 202
Query: 58 CSSSAFSCFILLSHPQCYD-QYPLYDSTHGTWRRLSLPYSLLLPSAAT----LLSSSKGL 112
SS A S F+LLSHPQ Y + PLYDS G WR LSL S+LLP AAT LLS++ GL
Sbjct: 203 SSSPALSSFLLLSHPQFYRHRLPLYDSAIGNWRNLSLTCSILLPYAATTAITLLSAANGL 262
Query: 113 LCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAF 172
LCFSLP+SSSFLVCNL+ SSR + FP YPF FE+LTLV P GYKIFM+ + S N A+
Sbjct: 263 LCFSLPNSSSFLVCNLLVGSSRVLQFPGYPFAFEMLTLVPAPDGYKIFMIASGSSSNNAW 322
Query: 173 VYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWETP 232
VYDS SW +F GF LS + HQ GV+ G LYF T EPFSIV FDLE+G+W
Sbjct: 323 VYDSGVHSWREFQ--GFDP-TLSDNCHQ-GVYCNGVLYFCTSEPFSIVCFDLESGVW--- 375
Query: 233 NDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGNWIEVE 292
D + LP ELTF +LV+DGE KLYL+GG+GRNGIS +MKLWEL G NW+ VE
Sbjct: 376 ----DRSVVELPGELTFVKLVSDGE--GKLYLVGGIGRNGISKSMKLWELE-GENWVLVE 428
Query: 293 RVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRTWHWLPSCPSLP 352
+PE MC+K +SVCYHNY+HVYCFWHQ ICVCCYTWPEILYY VARRTWHWLP CPSLP
Sbjct: 429 SLPEFMCQKLVSVCYHNYEHVYCFWHQETICVCCYTWPEILYYKVARRTWHWLPKCPSLP 488
Query: 353 HKWSCGF 359
KWSCGF
Sbjct: 489 DKWSCGF 495
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225458836|ref|XP_002285319.1| PREDICTED: F-box/kelch-repeat protein At5g43190-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust.
Identities = 228/367 (62%), Positives = 263/367 (71%), Gaps = 25/367 (6%)
Query: 4 KRREMDPAIWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSFLSK------TK 57
K +EMDP IW LP +LL+HVLSFLP K L TCK F SL++SPSFL+K +
Sbjct: 7 KSQEMDPGIWGHLPVELLEHVLSFLPLKSFFNLLCTCKRFKSLIYSPSFLAKYSPSSSSS 66
Query: 58 CSSSAFSCFILLSHPQCY-DQYPLYDSTHGTWRRLSLPYSLLLPSAAT----LLSSSKGL 112
SS A S F+LLSHPQ Y + PLYDS G WR LSL S+LLP AAT LLS++ GL
Sbjct: 67 SSSPALSSFLLLSHPQFYRHRLPLYDSAIGNWRNLSLTCSILLPYAATTAITLLSAANGL 126
Query: 113 LCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAF 172
LCFSLP+SSSFLVCNL+ SSR + FP YPF FE+LTLV P GYKIFM+ + S N A+
Sbjct: 127 LCFSLPNSSSFLVCNLLVGSSRVLQFPGYPFAFEMLTLVPAPDGYKIFMIASGSSSNNAW 186
Query: 173 VYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWETP 232
VYDS SW +F GF LS + HQ GV+ G LYF T EPFSIV FDLE+G+W
Sbjct: 187 VYDSGVHSWREFQ--GFDP-TLSDNCHQ-GVYCNGVLYFCTSEPFSIVCFDLESGVW--- 239
Query: 233 NDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGNWIEVE 292
D + LP ELTF +LV+DGE KLYL+GG+GRNGIS +MKLWEL G NW+ VE
Sbjct: 240 ----DRSVVELPGELTFVKLVSDGE--GKLYLVGGIGRNGISKSMKLWELE-GENWVLVE 292
Query: 293 RVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRTWHWLPSCPSLP 352
+PE MC+K +SVCYHNY+HVYCFWHQ ICVCCYTWPEILYY VARRTWHWLP CPSLP
Sbjct: 293 SLPEFMCQKLVSVCYHNYEHVYCFWHQETICVCCYTWPEILYYKVARRTWHWLPKCPSLP 352
Query: 353 HKWSCGF 359
KWSCGF
Sbjct: 353 DKWSCGF 359
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449450281|ref|XP_004142892.1| PREDICTED: F-box/kelch-repeat protein At5g43190-like [Cucumis sativus] gi|449482711|ref|XP_004156380.1| PREDICTED: F-box/kelch-repeat protein At5g43190-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust.
Identities = 212/355 (59%), Positives = 258/355 (72%), Gaps = 21/355 (5%)
Query: 8 MDPAIWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSFLSKTKCSSSAFSCFI 67
MDP IWSRLP +LLDHVLSFL + LRSTCKHF+SLL+SPSF+SK SS + +
Sbjct: 1 MDPGIWSRLPPELLDHVLSFLSLRTYFNLRSTCKHFDSLLYSPSFVSKHSDSSFSSF--L 58
Query: 68 LLSHPQCYDQYPLYDSTHGTWRRLSLPYSLLLPSAATLLSS---SKGLLCFSLPSSSSFL 124
LL+HPQC+ Q+PLYDS GTWR L S+ L S++ S + GL+CFSL S SFL
Sbjct: 59 LLAHPQCFSQFPLYDSARGTWRSFPLSLSVSLLSSSPSTSLLSTANGLVCFSLRHSGSFL 118
Query: 125 VCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKF 184
VCN +T SSR I+FP +PF FELLTLVS P GYKIFMLF S A V+DS + SW +F
Sbjct: 119 VCNFLTKSSRLIEFPYHPFAFELLTLVSVPLGYKIFMLFFDS----ALVFDSRNHSWRRF 174
Query: 185 DIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLP 244
D F I+ + QE +Y G LYF TPEPFSIV FDL+NG WE + +++P
Sbjct: 175 D--NFEP-IIGDNHRQEAAYYNGRLYFVTPEPFSIVSFDLDNGEWEQTD-------IVMP 224
Query: 245 HELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMS 304
ELTF RLV+DG+ KLY+IGG GRNGIS +++LWE GNW+EVE VP+M+C+KFMS
Sbjct: 225 EELTFVRLVSDGD--TKLYMIGGTGRNGISRSLRLWEFSEQGNWVEVESVPQMICKKFMS 282
Query: 305 VCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRTWHWLPSCPSLPHKWSCGF 359
+CYHNY+HVYCFWHQG IC+CCYTWPEILYY + RR+WHWLP CPS+P +WSCGF
Sbjct: 283 ICYHNYEHVYCFWHQGTICLCCYTWPEILYYKICRRSWHWLPKCPSVPERWSCGF 337
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356577799|ref|XP_003557010.1| PREDICTED: F-box/kelch-repeat protein At5g43190-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust.
Identities = 209/359 (58%), Positives = 260/359 (72%), Gaps = 20/359 (5%)
Query: 8 MDPAIWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSFLSK--TKCSSSAFSC 65
MDP IWS+LP ++L+++LSFLP K L LRSTCK F SL+FSP F+SK + +SS FS
Sbjct: 1 MDPIIWSKLPPEILEYILSFLPLKTFLNLRSTCKGFWSLIFSPPFISKHCSPTASSPFSS 60
Query: 66 FILLSHPQCYDQYPLYDSTHGTWRRLSLPYS---LLLPSAATLLSSSKGLLCFSLPSSSS 122
F+LLSHPQ + +PLYD T GTWR SL S PS +TL+SS GL C S +S S
Sbjct: 61 FLLLSHPQFHRHFPLYDCTLGTWRNFSLSLSDSFHSFPSFSTLISSG-GLFCLSDSTSCS 119
Query: 123 FLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWS 182
LVCNL+ SSR I +P++ E LT V+TP+GY IF+LF+++ N AFVYDS Q+W
Sbjct: 120 LLVCNLLAKSSRKIQYPSFSLHLEHLTFVTTPTGYTIFVLFSEAASNCAFVYDSKVQTWK 179
Query: 183 KFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMM 242
+F GF + +L + Q+GV + G LYF TPEPFS+V FDL++G WE P
Sbjct: 180 RFR--GF-APVLGDNHQQQGVLFNGGLYFATPEPFSVVMFDLKSGRWERP-------VWE 229
Query: 243 LP-HELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGN-WIEVERVPEMMCR 300
LP H LTF RLV+DG KLYL+GGVG NGIS ++KLWELG GN W+EV+ +P++MCR
Sbjct: 230 LPSHHLTFVRLVSDG--GGKLYLVGGVGSNGISRSIKLWELGGDGNYWVEVQSLPDLMCR 287
Query: 301 KFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRTWHWLPSCPSLPHKWSCGF 359
KF+SVCYHNY+HVYCFWH+GMIC+CCYTWPEILYY ++RRTWHWLP CPSLP K SCGF
Sbjct: 288 KFVSVCYHNYEHVYCFWHEGMICICCYTWPEILYYLLSRRTWHWLPRCPSLPLKCSCGF 346
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357437601|ref|XP_003589076.1| F-box/kelch-repeat protein [Medicago truncatula] gi|355478124|gb|AES59327.1| F-box/kelch-repeat protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 367 bits (943), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 210/368 (57%), Positives = 259/368 (70%), Gaps = 22/368 (5%)
Query: 4 KRREMDPAIWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSFLSK----TKCS 59
K MDP IWS+LP ++L+++LSFLP K + LRSTCK F L+FSPSF+SK + S
Sbjct: 12 KSLPMDPTIWSKLPPEILEYILSFLPLKTFMSLRSTCKGFWPLIFSPSFISKHSPSSSSS 71
Query: 60 SSAFSCFILLSHPQCYDQYPLYDSTHGTWRRLSLPYSLLLPSAA--TLLSSSKGLLCFSL 117
SS FS F+LLSHPQ + +PLYD GTWR +SL +S L S+ T L SS GL C S
Sbjct: 72 SSPFSSFLLLSHPQFHRHFPLYDCNLGTWRNISLSFSDSLHSSPSFTTLVSSGGLFCLSD 131
Query: 118 PSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDST 177
S S LVCNL+ S R I +P + E LT V+TP GY IF+L ++S N F+YDS+
Sbjct: 132 SLSCSLLVCNLLAKSKRKIQYPNFNLHIEHLTFVTTPKGYMIFVLSSESNSNSVFLYDSS 191
Query: 178 DQ--SWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWETPNDA 235
+ SW KF+ GF LS + HQ+GV++KG LYF TPEPFS+V FDLE+G WE P
Sbjct: 192 SRVLSWRKFN--GF-GPTLSDNPHQQGVYFKGCLYFATPEPFSVVYFDLESGKWEKPIGN 248
Query: 236 NDHMTMMLPHELTFFRLV--NDG--EESNKLYLIGGVGRNGISTTMKLWELGCGGNWIEV 291
LP +LTF RLV ND EE KL+LIGGVG NGIS ++KLWE+ GNW+E+
Sbjct: 249 -------LPEQLTFVRLVSVNDDAVEEGKKLFLIGGVGSNGISRSIKLWEMSEEGNWVEI 301
Query: 292 ERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRTWHWLPSCPSL 351
+ +P++MCRKF+SVCYHNY+HVYCFWH+GMIC+CCYTWPEILYY V+RRTWHWLP CPSL
Sbjct: 302 QSLPDLMCRKFVSVCYHNYEHVYCFWHEGMICICCYTWPEILYYLVSRRTWHWLPRCPSL 361
Query: 352 PHKWSCGF 359
P K SCGF
Sbjct: 362 PFKCSCGF 369
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356509767|ref|XP_003523617.1| PREDICTED: F-box/kelch-repeat protein At5g43190-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 323 bits (829), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 203/358 (56%), Positives = 248/358 (69%), Gaps = 18/358 (5%)
Query: 8 MDPAIWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSFLSKTKCSSSAFSC-F 66
MDP IWS+LP D+++H+L LP K LL LR TCK F SLLFSPSF+SK SSS+ +
Sbjct: 18 MDPRIWSKLPPDVVEHILLLLPLKTLLNLRPTCKAFTSLLFSPSFVSKHSSSSSSPFSSY 77
Query: 67 ILLSHPQCYDQYPLYDSTHGTWRRLSLPYSLLLPSAA--TLLSSSKGLLCFSLPSSSSFL 124
+L+SHPQC + LYDS +WR LSL S L +A TL+SSS GL C P+SSSFL
Sbjct: 78 LLISHPQCPHYFRLYDSNLCSWRTLSLSLSNSLHLSASFTLVSSSGGLFCLYNPTSSSFL 137
Query: 125 VCNLVTLSSRTIDFP-TYPFDFELLTLVSTPSGYKIFMLFAKSFPNYA-FVYDSTDQSWS 182
V NL SSR I+ P T +T V+TP GY I +L +KS N + FVYDS+ SW
Sbjct: 138 VHNLFVRSSRKIESPITRSRHLGHVTFVTTPLGYYIVLLCSKSTSNTSVFVYDSSKLSWR 197
Query: 183 KFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMM 242
F+ GF +++ S S HQ+G F+ G LYFTTPEPFS+V FDLE+G WE
Sbjct: 198 CFE--GF-NVVFSDSFHQQGTFFDGGLYFTTPEPFSVVFFDLESGEWE-------RYVAE 247
Query: 243 LPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGN-WIEVERVPEMMCRK 301
LP ++TF RLV+D E KLYL+GGVG +GIS ++KLWEL G W+EV +PE+MCRK
Sbjct: 248 LPQQVTFVRLVSD--EEGKLYLLGGVGNDGISRSIKLWELIKGERVWVEVVGLPEIMCRK 305
Query: 302 FMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRTWHWLPSCPSLPHKWSCGF 359
F+SVCYHNY+HVYCFWH+GMICVC Y WPEILYY+V RRTW WLP CP LP K+SCGF
Sbjct: 306 FVSVCYHNYEHVYCFWHEGMICVCFYMWPEILYYSVLRRTWDWLPRCPYLPLKFSCGF 363
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18422304|ref|NP_568622.1| F-box/kelch-repeat protein [Arabidopsis thaliana] gi|75170673|sp|Q9FHS6.1|FK119_ARATH RecName: Full=F-box/kelch-repeat protein At5g43190 gi|10177381|dbj|BAB10582.1| unnamed protein product [Arabidopsis thaliana] gi|27765056|gb|AAO23649.1| At5g43190 [Arabidopsis thaliana] gi|110743394|dbj|BAE99583.1| hypothetical protein [Arabidopsis thaliana] gi|332007539|gb|AED94922.1| F-box/kelch-repeat protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 319 bits (817), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 187/359 (52%), Positives = 238/359 (66%), Gaps = 16/359 (4%)
Query: 7 EMDPAIWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSFLSKTKCSSSAFSCF 66
+DP IWS LP LL+H+LS LP K LL LRS +H SL+ SPSF+S S + F
Sbjct: 42 NLDPNIWSNLPNHLLEHILSLLPFKTLLTLRSISRHLRSLILSPSFISD---HSFSLPSF 98
Query: 67 ILLSHPQCYDQYPLYDSTHGTWRRLSLPYSLLLPSAATLLSSSKGLLCFSLPSSSSFL-- 124
+LLSHPQ ++ +PL++ +W L LP SL L A++LLSSS GLLCFSL SS
Sbjct: 99 LLLSHPQSFNSFPLFNPNLISWCTLPLPRSLSLTCASSLLSSSNGLLCFSLSPSSVSSLS 158
Query: 125 VCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFML---FAKSFPNYAFVYDSTDQSW 181
+ N +T SSR+I P YPF FELL+LV++P GYKIF L + + +YDS D+SW
Sbjct: 159 IFNPLTRSSRSIKLPCYPFPFELLSLVTSPKGYKIFTLCSSSSAASSRSVCLYDSGDRSW 218
Query: 182 SKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTM 241
KF G +L + +Q+GVFY GSLYF EPF IV DL +G W T A
Sbjct: 219 RKF---GGVDQVLPRGFNQDGVFYNGSLYFARSEPFLIVSVDLNDGKWTT---ATGDGVF 272
Query: 242 MLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGG-NWIEVERVPEMMCR 300
E+TF RLV+D E+ LY++GG+G NGI ++K+WE +WIEVE +P+++CR
Sbjct: 273 PADDEITFARLVSDPEK-KILYMVGGIGSNGICRSIKIWEFKEETESWIEVETLPDIVCR 331
Query: 301 KFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRTWHWLPSCPSLPHKWSCGF 359
KF SVCYHNY+HVYC WH+ MICVCCY WPEIL+++V RRTWHW+P CPSLP KWSCGF
Sbjct: 332 KFTSVCYHNYEHVYCLWHKEMICVCCYNWPEILFFHVGRRTWHWVPKCPSLPEKWSCGF 390
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297791597|ref|XP_002863683.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] gi|297309518|gb|EFH39942.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 315 bits (807), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 185/359 (51%), Positives = 239/359 (66%), Gaps = 16/359 (4%)
Query: 7 EMDPAIWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSFLSKTKCSSSAFSCF 66
MDP IWS LP LL+H+LS LP K LL LRS +H SL+ SPSF+S S + F
Sbjct: 42 NMDPTIWSNLPNHLLEHILSLLPFKTLLTLRSISRHLRSLILSPSFISD---HSFSLPSF 98
Query: 67 ILLSHPQCYDQYPLYDSTHGTWRRLSLPYSLLLPSAATLLSSSKGLLCFSLPSSSSFL-- 124
+LLSHPQ ++ +PL++ +W L LP SL L +A++LLSSS GLLCFS+ SS
Sbjct: 99 LLLSHPQSFNSFPLFNPNLISWCTLPLPRSLSLTNASSLLSSSNGLLCFSISPSSVSSLS 158
Query: 125 VCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFML---FAKSFPNYAFVYDSTDQSW 181
+ N +T SSR+I P YPF FELL+L+++P GYKIF L + + +YDS D+SW
Sbjct: 159 IFNPLTRSSRSIKLPCYPFHFELLSLLTSPEGYKIFTLCSSSSAASSRSVCLYDSGDRSW 218
Query: 182 SKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTM 241
KF G +L + +Q+GVFY GSLYF EPF IV DL +G W T A
Sbjct: 219 RKF---GGVDQVLPRGFNQDGVFYNGSLYFARSEPFLIVSVDLNDGKWTT---ATGDGFF 272
Query: 242 MLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGG-NWIEVERVPEMMCR 300
+ +TF RLV+D + N LY++GG+G NGI ++K+WE +WIEVE +P+++CR
Sbjct: 273 PADNLITFARLVSDPVK-NILYMVGGIGSNGICRSIKIWEFKEETESWIEVETLPDIVCR 331
Query: 301 KFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRTWHWLPSCPSLPHKWSCGF 359
KF SVCYHNY+HVYC WH+ MICVCCY WPEIL+++V RRTWHW+P CPSLP KWSCGF
Sbjct: 332 KFTSVCYHNYEHVYCLWHKEMICVCCYNWPEILFFHVGRRTWHWVPKCPSLPEKWSCGF 390
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 372 | ||||||
| TAIR|locus:2169253 | 403 | AT5G43190 "AT5G43190" [Arabido | 0.919 | 0.848 | 0.449 | 1.4e-80 | |
| TAIR|locus:2143256 | 448 | AT5G15710 "AT5G15710" [Arabido | 0.551 | 0.457 | 0.260 | 4.4e-20 | |
| TAIR|locus:2015766 | 442 | UFO "AT1G30950" [Arabidopsis t | 0.567 | 0.477 | 0.216 | 2.8e-11 | |
| TAIR|locus:2015974 | 467 | LCR "AT1G27340" [Arabidopsis t | 0.5 | 0.398 | 0.260 | 2.4e-10 | |
| TAIR|locus:2125889 | 457 | AT4G33160 "AT4G33160" [Arabido | 0.602 | 0.490 | 0.225 | 1.5e-06 | |
| TAIR|locus:2082797 | 411 | HWS "HAWAIIAN SKIRT" [Arabidop | 0.263 | 0.238 | 0.261 | 1.7e-06 |
| TAIR|locus:2169253 AT5G43190 "AT5G43190" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 809 (289.8 bits), Expect = 1.4e-80, P = 1.4e-80
Identities = 161/358 (44%), Positives = 207/358 (57%)
Query: 8 MDPAIWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHXXXXXXXXXXXXKTKCSSSAFSCFI 67
+DP IWS LP LL+H+LS LP K LL LRS +H S + F+
Sbjct: 43 LDPNIWSNLPNHLLEHILSLLPFKTLLTLRSISRHLRSLILSPSFISD---HSFSLPSFL 99
Query: 68 LLSHPQCYDQYPLYDSTHGTWRRXXXXXXXXXXXXXXXXXXXKGXX--XXXXXXXXXXXV 125
LLSHPQ ++ +PL++ +W G +
Sbjct: 100 LLSHPQSFNSFPLFNPNLISWCTLPLPRSLSLTCASSLLSSSNGLLCFSLSPSSVSSLSI 159
Query: 126 CNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFP---NYAFVYDSTDQSWS 182
N +T SSR+I P YPF FELL+LV++P GYKIF L + S +YDS D+SW
Sbjct: 160 FNPLTRSSRSIKLPCYPFPFELLSLVTSPKGYKIFTLCSSSSAASSRSVCLYDSGDRSWR 219
Query: 183 KFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMM 242
KF G +L + +Q+GVFY GSLYF EPF IV DL +G W T A
Sbjct: 220 KF---GGVDQVLPRGFNQDGVFYNGSLYFARSEPFLIVSVDLNDGKWTT---ATGDGVFP 273
Query: 243 LPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGG-NWIEVERVPEMMCRK 301
E+TF RLV+D E+ LY++GG+G NGI ++K+WE +WIEVE +P+++CRK
Sbjct: 274 ADDEITFARLVSDPEKKI-LYMVGGIGSNGICRSIKIWEFKEETESWIEVETLPDIVCRK 332
Query: 302 FMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRTWHWLPSCPSLPHKWSCGF 359
F SVCYHNY+HVYC WH+ MICVCCY WPEIL+++V RRTWHW+P CPSLP KWSCGF
Sbjct: 333 FTSVCYHNYEHVYCLWHKEMICVCCYNWPEILFFHVGRRTWHWVPKCPSLPEKWSCGF 390
|
|
| TAIR|locus:2143256 AT5G15710 "AT5G15710" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 195 (73.7 bits), Expect = 4.4e-20, Sum P(2) = 4.4e-20
Identities = 60/230 (26%), Positives = 101/230 (43%)
Query: 125 VCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKS--FPNYAF---VYDSTDQ 179
VCN + S RT+ Y +L+ +V K F + A S + + + VYDS
Sbjct: 217 VCNPLMQSWRTLPSMHYNQQRQLIMVVDRSD--KSFKVIATSDIYGDKSLPTEVYDSKTD 274
Query: 180 SWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWETPNDANDHM 239
WS I P++ L S + LY T P ++ + L++G WE H+
Sbjct: 275 KWSLHQI--MPAVNLCSSKM---AYCDSRLYLETLSPLGLMMYRLDSGQWE-------HI 322
Query: 240 TMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELG-CGGNWIEVERVPEMM 298
P L LV ++ +L+L+G +G +M++WEL +W+E+ R+P
Sbjct: 323 PAKFPRSLLDGYLVAGTQK--RLFLVGRIGLYSTLQSMRIWELDHTKVSWVEISRMPPKY 380
Query: 299 CRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRTWHWLPSC 348
R + + ++ CF +IC + + L YNV ++ W W+ C
Sbjct: 381 FRALLRLSAERFE---CFGQDNLICFTSWNQGKGLLYNVDKKIWSWISGC 427
|
|
| TAIR|locus:2015766 UFO "AT1G30950" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 126 (49.4 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
Identities = 51/236 (21%), Positives = 102/236 (43%)
Query: 125 VCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKF 184
+CN + S + + P F + L TP+ + + YA V + + +S+
Sbjct: 175 LCNPLVGSVSQLPPISRPRLFPSIGLSVTPTSIDVTVAGDDLISPYA-VKNLSSESFH-V 232
Query: 185 DIDGFPSM-ILSQS-----SHQEG--VFYKGSLYFTTPEPFSIVRFDLENGIWETPNDAN 236
D GF S+ ++ S S + G V+ +G Y PFS++ +++ W
Sbjct: 233 DAGGFFSLWAMTSSLPRLCSLESGKMVYVQGKFYCMNYSPFSVLSYEVTGNRW------- 285
Query: 237 DHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGIST--TMKLWELGC-GGNWIEVER 293
+ + P F R + E +L L+ V ++ ++ +++LW L W+E+ER
Sbjct: 286 --IKIQAPMR-RFLRSPSLLESKGRLILVAAVEKSKLNVPKSLRLWSLQQDNATWVEIER 342
Query: 294 VPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRTWHWLPSCP 349
+P+ + +F + C +Q + + L +++ R++W W+P CP
Sbjct: 343 MPQPLYTQFAAE--EGGKGFECVGNQEFVMIVLRGTSLQLLFDIVRKSWLWVPPCP 396
|
|
| TAIR|locus:2015974 LCR "AT1G27340" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 141 (54.7 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 57/219 (26%), Positives = 98/219 (44%)
Query: 152 STPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMI---LSQSSHQEGVFYKGS 208
ST GYK+ + + Y VYDS W+K PS I + + + V +
Sbjct: 259 STSHGYKVLWVGCEG--EYE-VYDSLSNVWTKRGT--IPSNIKLPVLLNFKSQPVAIHST 313
Query: 209 LYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGV 268
LYF +P I+ +D+ +G W+ + P +L+ L GE +L L+G +
Sbjct: 314 LYFMLTDPEGILSYDMVSGKWK-------QFIIPGPPDLSDHTLAACGE---RLMLVGLL 363
Query: 269 GRNGISTTMKLWELG-CGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCY 327
+N +T + +WEL W EV+R+P + C +F Y + + C ++G + +
Sbjct: 364 TKNA-ATCVCIWELQKMTLLWKEVDRMPNIWCLEF----YGKHIRMNCLGNKGCLILLSL 418
Query: 328 TWPE---ILYYNVARRTWHWLPSCPSLPHK----W-SCG 358
+ ++ YN R W +P C ++P W +CG
Sbjct: 419 RSRQMNRLITYNAVTREWTKVPGC-TVPRGRKRLWIACG 456
|
|
| TAIR|locus:2125889 AT4G33160 "AT4G33160" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 112 (44.5 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 56/248 (22%), Positives = 99/248 (39%)
Query: 16 LPEDLLDHVLSFLPPKMLLKLRSTCKHXXXXXXXXXXXXKTKCSS--SAFSCFILLSHPQ 73
L +D+L+ VLS+LP ++ S CK K CS + F ++ +
Sbjct: 70 LNDDVLERVLSWLPTSCFFRMSSVCKRWKSSQTSKSF--KLACSQIPTRDPWFFMIDNDS 127
Query: 74 CYDQYPLYDSTHGTWRRXXXXXXXXXXXXXXXXXXXKGXXXXXXXXXXXXXVC-NLVTLS 132
+ ++DST +W+ G + N +T S
Sbjct: 128 NSSSF-VFDSTENSWKNLNRRDFLHHHRQDFIPVASSGGLLCYRCSISGDFLLRNPLTGS 186
Query: 133 SRTIDFPTY------PFDFELLTLVS-TPSGYKIFMLFAKSFPNYAF-VYDSTDQSWSKF 184
SR D P+ P +T + TPS Y + + + PN +F +Y+S SWSK
Sbjct: 187 SR--DIPSQDNNNNKPLQAVAMTTTTVTPSSYTLVTISGE-IPNLSFKIYESNADSWSK- 242
Query: 185 DIDGFPSMILSQSS-HQEGVFYKGSLYFTTPEPFSIVRFDLENGIWETPNDA-NDHMTMM 242
D + S+ + SS H + G++YF + + +V N + +P+ + +T+
Sbjct: 243 DQE-LESVKNNDSSLHDDYDTDSGTVYFLSKQGNVVVA---SNNLQRSPSKQYSSVITVT 298
Query: 243 LPHELTFF 250
E+ +F
Sbjct: 299 DEAEIVYF 306
|
|
| TAIR|locus:2082797 HWS "HAWAIIAN SKIRT" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 107 (42.7 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
Identities = 29/111 (26%), Positives = 55/111 (49%)
Query: 243 LPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMK---LWELGCGGNWIEVERVPEMMC 299
+P LT RL+N E +L ++GG+G++ +K +W L G W+E+ ++P+
Sbjct: 287 MPCSLTCGRLMNLRE---RLVIVGGIGKHDRPEVIKGIGIWVLK-GKEWVEMAKMPQ--- 339
Query: 300 RKFMSVCYHNYDHVYCF-WHQGMICVCCYTWPEILYYNVARRTWHWLPSCP 349
R F + +D V+ ++ + Y P +L +++ + W W CP
Sbjct: 340 RFFQG--FGEFDEVFASSGTDDLVYIQSYGSPALLTFDMNLKYWRWSQKCP 388
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FHS6 | FK119_ARATH | No assigned EC number | 0.5208 | 0.9220 | 0.8511 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 372 | |||
| pfam12937 | 47 | pfam12937, F-box-like, F-box-like | 2e-07 | |
| smart00256 | 41 | smart00256, FBOX, A Receptor for Ubiquitination Ta | 3e-07 | |
| pfam00646 | 48 | pfam00646, F-box, F-box domain | 4e-06 |
| >gnl|CDD|221867 pfam12937, F-box-like, F-box-like | Back alignment and domain information |
|---|
Score = 46.7 bits (112), Expect = 2e-07
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 13 WSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSF 52
S LP+++L + S+L P+ LL+L C+ + L S
Sbjct: 1 LSDLPDEILLQIFSYLDPRDLLRLALVCRRWRELASDDSL 40
|
This is an F-box-like family. Length = 47 |
| >gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets | Back alignment and domain information |
|---|
Score = 46.3 bits (111), Expect = 3e-07
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 16 LPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSFLSKT 56
LP+++L+ +LS L PK LL+LR + + SL+ S F K
Sbjct: 1 LPDEILEEILSKLDPKDLLRLRKVSRKWRSLIDSHDFWFKL 41
|
Length = 41 |
| >gnl|CDD|201368 pfam00646, F-box, F-box domain | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 4e-06
Identities = 18/44 (40%), Positives = 23/44 (52%)
Query: 12 IWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSFLSK 55
LP+DLL +LS L PK LL+L K + SL+ S K
Sbjct: 2 SLLDLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKLWKK 45
|
This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 372 | |||
| TIGR01640 | 230 | F_box_assoc_1 F-box protein interaction domain. Th | 99.94 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 99.9 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 99.89 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 99.8 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 99.78 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 99.77 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 99.77 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 99.75 | |
| PLN02153 | 341 | epithiospecifier protein | 99.75 | |
| PLN02193 | 470 | nitrile-specifier protein | 99.72 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 99.7 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 99.7 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 99.68 | |
| PLN03215 | 373 | ascorbic acid mannose pathway regulator 1; Provisi | 99.66 | |
| PLN02153 | 341 | epithiospecifier protein | 99.66 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 99.61 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 99.58 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 99.57 | |
| PLN02193 | 470 | nitrile-specifier protein | 99.52 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 99.51 | |
| KOG4693 | 392 | consensus Uncharacterized conserved protein, conta | 99.28 | |
| KOG4693 | 392 | consensus Uncharacterized conserved protein, conta | 99.08 | |
| PF08268 | 129 | FBA_3: F-box associated domain; InterPro: IPR01318 | 98.95 | |
| KOG1230 | 521 | consensus Protein containing repeated kelch motifs | 98.92 | |
| PF12937 | 47 | F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B | 98.86 | |
| KOG0379 | 482 | consensus Kelch repeat-containing proteins [Genera | 98.86 | |
| KOG0379 | 482 | consensus Kelch repeat-containing proteins [Genera | 98.78 | |
| PF07734 | 164 | FBA_1: F-box associated; InterPro: IPR006527 This | 98.76 | |
| PF00646 | 48 | F-box: F-box domain; InterPro: IPR001810 The F-box | 98.73 | |
| KOG1230 | 521 | consensus Protein containing repeated kelch motifs | 98.69 | |
| smart00256 | 41 | FBOX A Receptor for Ubiquitination Targets. | 98.66 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 98.26 | |
| KOG4152 | 830 | consensus Host cell transcription factor HCFC1 [Ce | 97.71 | |
| COG3055 | 381 | Uncharacterized protein conserved in bacteria [Fun | 97.51 | |
| PF13964 | 50 | Kelch_6: Kelch motif | 97.47 | |
| COG3055 | 381 | Uncharacterized protein conserved in bacteria [Fun | 97.35 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 97.16 | |
| PF01344 | 47 | Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is | 97.07 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 96.99 | |
| PF13964 | 50 | Kelch_6: Kelch motif | 96.84 | |
| KOG4152 | 830 | consensus Host cell transcription factor HCFC1 [Ce | 96.71 | |
| smart00612 | 47 | Kelch Kelch domain. | 96.4 | |
| PF01344 | 47 | Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is | 96.4 | |
| PF07646 | 49 | Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is | 96.24 | |
| PF07646 | 49 | Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is | 96.23 | |
| KOG2997 | 366 | consensus F-box protein FBX9 [General function pre | 96.17 | |
| PF13418 | 49 | Kelch_4: Galactose oxidase, central domain; PDB: 2 | 96.15 | |
| PF13415 | 49 | Kelch_3: Galactose oxidase, central domain | 96.02 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 95.81 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 95.27 | |
| smart00612 | 47 | Kelch Kelch domain. | 95.12 | |
| KOG2437 | 723 | consensus Muskelin [Signal transduction mechanisms | 94.46 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 93.63 | |
| PF02191 | 250 | OLF: Olfactomedin-like domain; InterPro: IPR003112 | 93.49 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 93.11 | |
| PF13415 | 49 | Kelch_3: Galactose oxidase, central domain | 92.95 | |
| PF13418 | 49 | Kelch_4: Galactose oxidase, central domain; PDB: 2 | 92.77 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 92.63 | |
| TIGR01640 | 230 | F_box_assoc_1 F-box protein interaction domain. Th | 92.33 | |
| PF07893 | 342 | DUF1668: Protein of unknown function (DUF1668); In | 92.29 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 92.24 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 92.06 | |
| KOG2437 | 723 | consensus Muskelin [Signal transduction mechanisms | 92.0 | |
| smart00284 | 255 | OLF Olfactomedin-like domains. | 91.99 | |
| PF07893 | 342 | DUF1668: Protein of unknown function (DUF1668); In | 91.98 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 91.82 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 91.34 | |
| PLN02772 | 398 | guanylate kinase | 90.98 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 89.93 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 88.2 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 87.84 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 87.73 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 85.98 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 85.23 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 83.53 | |
| PF13854 | 42 | Kelch_5: Kelch motif | 83.38 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 82.55 |
| >TIGR01640 F_box_assoc_1 F-box protein interaction domain | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.8e-25 Score=193.64 Aligned_cols=208 Identities=25% Similarity=0.415 Sum_probs=149.7
Q ss_pred EEecCcEEEEecCCCceEEEEeccccceeccCCCCCC---CC--ceeEEEEeCCCCEEEEEEeecC---CCceEEEEECC
Q 017381 106 LSSSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYP---FD--FELLTLVSTPSGYKIFMLFAKS---FPNYAFVYDST 177 (372)
Q Consensus 106 ~~s~~Gll~~~~~~~~~~~v~NP~t~~~~~lP~~~~~---~~--~~~~~~~~~~~~ykvv~~~~~~---~~~~~~vy~s~ 177 (372)
+++||||+|+... ..++||||.|++++.||+++.+ .. ..++|+++.+++|||+.+.... ....++||+++
T Consensus 1 ~~sCnGLlc~~~~--~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~ 78 (230)
T TIGR01640 1 VVPCDGLICFSYG--KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLG 78 (230)
T ss_pred CcccceEEEEecC--CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeC
Confidence 3689999999764 7899999999999999976542 11 2577888888999999987642 34589999999
Q ss_pred CCCccccccCCCCccccccCCCcccEEECCEEEEeeeCC-----cEEEEEecCCCeeec-cCCCCccccccCCCcc----
Q 017381 178 DQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEP-----FSIVRFDLENGIWET-PNDANDHMTMMLPHEL---- 247 (372)
Q Consensus 178 ~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~~y~~~~~~-----~~i~~yD~~~~~w~~-i~~p~~~~~~~~p~~~---- 247 (372)
+++|+... ..+.... ....++++||.+||+.... ..|++||+.+++|+. +. +|...
T Consensus 79 ~~~Wr~~~--~~~~~~~---~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~---------~P~~~~~~~ 144 (230)
T TIGR01640 79 SNSWRTIE--CSPPHHP---LKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIP---------LPCGNSDSV 144 (230)
T ss_pred CCCccccc--cCCCCcc---ccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeee---------cCccccccc
Confidence 99999987 3333111 1223999999999998532 279999999999994 65 44332
Q ss_pred cccceeeeccCCCeEEEEEeeecCCccceEEEEEEcCCCC--EEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEE
Q 017381 248 TFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGN--WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVC 325 (372)
Q Consensus 248 ~~~~lv~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~~~~~--W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 325 (372)
....|+ + ++|+|+++.... ....++||.|++.+. |++..+++.....++.. ...+.++.+++.|++.
T Consensus 145 ~~~~L~-~--~~G~L~~v~~~~---~~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~-----~~~~~~~~~~g~I~~~ 213 (230)
T TIGR01640 145 DYLSLI-N--YKGKLAVLKQKK---DTNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVD-----DNFLSGFTDKGEIVLC 213 (230)
T ss_pred cceEEE-E--ECCEEEEEEecC---CCCcEEEEEECCCCCCceeEEEEEcCcchhhhhh-----heeEeEEeeCCEEEEE
Confidence 234566 4 899999987632 124599999986643 99999987532222221 1224566777888887
Q ss_pred eec-CCe-EEEEECCCC
Q 017381 326 CYT-WPE-ILYYNVARR 340 (372)
Q Consensus 326 ~~~-~~~-v~~yd~~~~ 340 (372)
.+. ... ++.||++++
T Consensus 214 ~~~~~~~~~~~y~~~~~ 230 (230)
T TIGR01640 214 CEDENPFYIFYYNVGEN 230 (230)
T ss_pred eCCCCceEEEEEeccCC
Confidence 753 133 999999885
|
This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-21 Score=189.47 Aligned_cols=236 Identities=15% Similarity=0.170 Sum_probs=178.8
Q ss_pred CccccccCCCCCeeeecCCCCCCCCCceEEEEecCcEEEEecCCC------ceEEEEeccccceeccCCCCCCCCceeEE
Q 017381 76 DQYPLYDSTHGTWRRLSLPYSLLLPSAATLLSSSKGLLCFSLPSS------SSFLVCNLVTLSSRTIDFPTYPFDFELLT 149 (372)
Q Consensus 76 ~~~~~~d~~~~~w~~l~~~~~~~~~~~~~~~~s~~Gll~~~~~~~------~~~~v~NP~t~~~~~lP~~~~~~~~~~~~ 149 (372)
+.+..||+..+.|..+. .++.++....+++.+|.|++.++.. +.+..|||.+++|..+|+|..++...+++
T Consensus 301 ~~ve~yd~~~~~w~~~a---~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~ 377 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLA---PMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVA 377 (571)
T ss_pred ceeEEecCCcCcEeecC---CCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeE
Confidence 45678999999999885 2233455666788899888877643 47899999999999999998877666555
Q ss_pred EEeCCCCEEEEEEeecCCC---ceEEEEECCCCCccccccCCCCccccccCCCcccEEECCEEEEeeeC------CcEEE
Q 017381 150 LVSTPSGYKIFMLFAKSFP---NYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPE------PFSIV 220 (372)
Q Consensus 150 ~~~~~~~ykvv~~~~~~~~---~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~~y~~~~~------~~~i~ 220 (372)
... .+|+++||.... ..+|.||+.+++|...+ +|+. .+..+.++.++|++|.+++. -..+.
T Consensus 378 ~l~----g~iYavGG~dg~~~l~svE~YDp~~~~W~~va--~m~~----~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve 447 (571)
T KOG4441|consen 378 VLD----GKLYAVGGFDGEKSLNSVECYDPVTNKWTPVA--PMLT----RRSGHGVAVLGGKLYIIGGGDGSSNCLNSVE 447 (571)
T ss_pred EEC----CEEEEEeccccccccccEEEecCCCCcccccC--CCCc----ceeeeEEEEECCEEEEEcCcCCCccccceEE
Confidence 432 389999986532 48999999999999998 6654 33456688999999999872 25799
Q ss_pred EEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeEEEEEeeecCCccceEEEEEEcCCCC-EEEEEecChHHH
Q 017381 221 RFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGN-WIEVERVPEMMC 299 (372)
Q Consensus 221 ~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~~~~~-W~~v~~lp~~~~ 299 (372)
+||+.+++|+.+. | |+..+....+++ .+|+||++||........+++.+ |+.++ |+.+..|....
T Consensus 448 ~YDP~t~~W~~~~-~-------M~~~R~~~g~a~---~~~~iYvvGG~~~~~~~~~VE~y--dp~~~~W~~v~~m~~~r- 513 (571)
T KOG4441|consen 448 CYDPETNTWTLIA-P-------MNTRRSGFGVAV---LNGKIYVVGGFDGTSALSSVERY--DPETNQWTMVAPMTSPR- 513 (571)
T ss_pred EEcCCCCceeecC-C-------cccccccceEEE---ECCEEEEECCccCCCccceEEEE--cCCCCceeEcccCcccc-
Confidence 9999999999974 6 777666666664 89999999996542223344555 66665 99997775332
Q ss_pred HHhhhhccCCCceEEEEeeCCEEEEEeec-----CCeEEEEECCCCceEECCCCC
Q 017381 300 RKFMSVCYHNYDHVYCFWHQGMICVCCYT-----WPEILYYNVARRTWHWLPSCP 349 (372)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~v~~yd~~~~~w~~v~~~~ 349 (372)
....++..++++|+.++. .+.|.+||+.+++|+.++.+.
T Consensus 514 -----------s~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~~~~ 557 (571)
T KOG4441|consen 514 -----------SAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWTEVTEPE 557 (571)
T ss_pred -----------ccccEEEECCEEEEEecccCccccceeEEcCCCCCceeeCCCcc
Confidence 335677789999999853 235999999999999998833
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-21 Score=191.44 Aligned_cols=233 Identities=11% Similarity=0.112 Sum_probs=169.1
Q ss_pred ccccccCCCCCeeeecCCCCCCCCCceEEEEecCcEEEEecCC------CceEEEEeccccceeccCCCCCCCCceeEEE
Q 017381 77 QYPLYDSTHGTWRRLSLPYSLLLPSAATLLSSSKGLLCFSLPS------SSSFLVCNLVTLSSRTIDFPTYPFDFELLTL 150 (372)
Q Consensus 77 ~~~~~d~~~~~w~~l~~~~~~~~~~~~~~~~s~~Gll~~~~~~------~~~~~v~NP~t~~~~~lP~~~~~~~~~~~~~ 150 (372)
....||+..++|..++ ++|.....+.+++.+|.|++.++. .+.++.|||.+++|..+|+++.++...+++.
T Consensus 273 ~v~~yd~~~~~W~~l~---~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~ 349 (557)
T PHA02713 273 CILVYNINTMEYSVIS---TIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAV 349 (557)
T ss_pred CEEEEeCCCCeEEECC---CCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEE
Confidence 3467999999999885 222333344566778877776652 2468899999999999999987766554443
Q ss_pred EeCCCCEEEEEEeecCC---CceEEEEECCCCCccccccCCCCccccccCCCcccEEECCEEEEeeeCC-----------
Q 017381 151 VSTPSGYKIFMLFAKSF---PNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEP----------- 216 (372)
Q Consensus 151 ~~~~~~ykvv~~~~~~~---~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~~y~~~~~~----------- 216 (372)
... +|+++||... ...+++||+.+++|+..+ ++|. .+....++.++|++|.+++..
T Consensus 350 ~~g----~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~--~mp~----~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~ 419 (557)
T PHA02713 350 IDD----TIYAIGGQNGTNVERTIECYTMGDDKWKMLP--DMPI----ALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHM 419 (557)
T ss_pred ECC----EEEEECCcCCCCCCceEEEEECCCCeEEECC--CCCc----ccccccEEEECCEEEEEeCCCccccccccccc
Confidence 322 8999998643 347999999999999998 6765 223456788999999998632
Q ss_pred ------------cEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeEEEEEeeecCCccceEEEEEEcC
Q 017381 217 ------------FSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGC 284 (372)
Q Consensus 217 ------------~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~~ 284 (372)
..+.+||+.+++|+.+. | ||..+....+++ .+|+||++||....... .-.|..+|+
T Consensus 420 ~~~~~~~~~~~~~~ve~YDP~td~W~~v~-~-------m~~~r~~~~~~~---~~~~IYv~GG~~~~~~~-~~~ve~Ydp 487 (557)
T PHA02713 420 NSIDMEEDTHSSNKVIRYDTVNNIWETLP-N-------FWTGTIRPGVVS---HKDDIYVVCDIKDEKNV-KTCIFRYNT 487 (557)
T ss_pred ccccccccccccceEEEECCCCCeEeecC-C-------CCcccccCcEEE---ECCEEEEEeCCCCCCcc-ceeEEEecC
Confidence 35899999999999864 5 666666666774 89999999985321111 112455577
Q ss_pred CC--CEEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeecCC--eEEEEECCCCceEECC
Q 017381 285 GG--NWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWP--EILYYNVARRTWHWLP 346 (372)
Q Consensus 285 ~~--~W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~v~~yd~~~~~w~~v~ 346 (372)
.+ +|+.+..||... ....++..+|+||+.++..+ .+.+||+.|++|+.++
T Consensus 488 ~~~~~W~~~~~m~~~r------------~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~ 541 (557)
T PHA02713 488 NTYNGWELITTTESRL------------SALHTILHDNTIMMLHCYESYMLQDTFNVYTYEWNHIC 541 (557)
T ss_pred CCCCCeeEccccCccc------------ccceeEEECCEEEEEeeecceeehhhcCcccccccchh
Confidence 65 499999887543 22456677999999986544 6899999999999875
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.1e-18 Score=163.81 Aligned_cols=199 Identities=14% Similarity=0.130 Sum_probs=151.8
Q ss_pred ceEEEEeccccceeccCCCCCCCCceeEEEEeCCCCEEEEEEeecC-C---CceEEEEECCCCCccccccCCCCcccccc
Q 017381 121 SSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKS-F---PNYAFVYDSTDQSWSKFDIDGFPSMILSQ 196 (372)
Q Consensus 121 ~~~~v~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~-~---~~~~~vy~s~~~~W~~~~~~~~p~~~~~~ 196 (372)
..+..|||.+++|..+++++.++...+++.... +|+++||.. . ...+++||+.+++|+..+ +|.. .
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~----~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a--~M~~----~ 370 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNG----KLYVVGGYDSGSDRLSSVERYDPRTNQWTPVA--PMNT----K 370 (571)
T ss_pred ceeEEecCCcCcEeecCCCCcccccccEEEECC----EEEEEccccCCCcccceEEEecCCCCceeccC--CccC----c
Confidence 578899999999999999998777666655433 899999876 2 249999999999999988 6654 3
Q ss_pred CCCcccEEECCEEEEeeeCC-----cEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeEEEEEeeecC
Q 017381 197 SSHQEGVFYKGSLYFTTPEP-----FSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRN 271 (372)
Q Consensus 197 ~~~~~~v~~~G~~y~~~~~~-----~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~ 271 (372)
+.....+.++|.+|.+++.. ..+..||+.+++|+.+. | |+..+.....++ .+|+||++||....
T Consensus 371 R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va-~-------m~~~r~~~gv~~---~~g~iYi~GG~~~~ 439 (571)
T KOG4441|consen 371 RSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVA-P-------MLTRRSGHGVAV---LGGKLYIIGGGDGS 439 (571)
T ss_pred cccceeEEECCEEEEEeccccccccccEEEecCCCCcccccC-C-------CCcceeeeEEEE---ECCEEEEEcCcCCC
Confidence 34566789999999998732 46999999999999974 5 555555555553 89999999995432
Q ss_pred C-ccceEEEEEEcCCCC-EEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeecC-----CeEEEEECCCCceEE
Q 017381 272 G-ISTTMKLWELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTW-----PEILYYNVARRTWHW 344 (372)
Q Consensus 272 ~-~~~~i~vw~l~~~~~-W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~v~~yd~~~~~w~~ 344 (372)
. ....++.| |+.++ |+.+..|+... ....++..++.||+.++.. ..|..||+++++|+.
T Consensus 440 ~~~l~sve~Y--DP~t~~W~~~~~M~~~R------------~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~ 505 (571)
T KOG4441|consen 440 SNCLNSVECY--DPETNTWTLIAPMNTRR------------SGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTM 505 (571)
T ss_pred ccccceEEEE--cCCCCceeecCCccccc------------ccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeE
Confidence 2 22455555 77766 99999886432 2244667889999998633 248999999999999
Q ss_pred CCCCCCCCCC
Q 017381 345 LPSCPSLPHK 354 (372)
Q Consensus 345 v~~~~~~~~~ 354 (372)
++.++..++.
T Consensus 506 v~~m~~~rs~ 515 (571)
T KOG4441|consen 506 VAPMTSPRSA 515 (571)
T ss_pred cccCcccccc
Confidence 9878777665
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-17 Score=163.18 Aligned_cols=201 Identities=14% Similarity=0.170 Sum_probs=146.1
Q ss_pred ceEEEEeccccceeccCCCCCCCCceeEEEEeCCCCEEEEEEeecC-C---CceEEEEECCCCCccccccCCCCcccccc
Q 017381 121 SSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKS-F---PNYAFVYDSTDQSWSKFDIDGFPSMILSQ 196 (372)
Q Consensus 121 ~~~~v~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~-~---~~~~~vy~s~~~~W~~~~~~~~p~~~~~~ 196 (372)
..+..|||.+++|..+++++.++...+.+... -+|+++||.. . ...++.||+.+++|...+ +||. .
T Consensus 272 ~~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~----~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~--~m~~----~ 341 (557)
T PHA02713 272 PCILVYNINTMEYSVISTIPNHIINYASAIVD----NEIIIAGGYNFNNPSLNKVYKINIENKIHVELP--PMIK----N 341 (557)
T ss_pred CCEEEEeCCCCeEEECCCCCccccceEEEEEC----CEEEEEcCCCCCCCccceEEEEECCCCeEeeCC--CCcc----h
Confidence 35788999999999999988766544433322 2899999853 1 357999999999999888 6664 2
Q ss_pred CCCcccEEECCEEEEeeeCC-----cEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeEEEEEeeecC
Q 017381 197 SSHQEGVFYKGSLYFTTPEP-----FSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRN 271 (372)
Q Consensus 197 ~~~~~~v~~~G~~y~~~~~~-----~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~ 271 (372)
+.....+.++|++|.+++.. ..+.+||+.+++|+.+. | +|..+.....++ ++|+||++||....
T Consensus 342 R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~-~-------mp~~r~~~~~~~---~~g~IYviGG~~~~ 410 (557)
T PHA02713 342 RCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLP-D-------MPIALSSYGMCV---LDQYIYIIGGRTEH 410 (557)
T ss_pred hhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECC-C-------CCcccccccEEE---ECCEEEEEeCCCcc
Confidence 34556889999999998742 46899999999999864 5 777666666664 89999999985321
Q ss_pred C----------------ccceEEEEEEcCCCC-EEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeecC-----
Q 017381 272 G----------------ISTTMKLWELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTW----- 329 (372)
Q Consensus 272 ~----------------~~~~i~vw~l~~~~~-W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----- 329 (372)
. ....-.+..+|+..+ |+.+..|+... ....++..+|+||+.++..
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r------------~~~~~~~~~~~IYv~GG~~~~~~~ 478 (557)
T PHA02713 411 IDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGT------------IRPGVVSHKDDIYVVCDIKDEKNV 478 (557)
T ss_pred cccccccccccccccccccccceEEEECCCCCeEeecCCCCccc------------ccCcEEEECCEEEEEeCCCCCCcc
Confidence 0 001124666677766 99998876432 1133556788999997532
Q ss_pred -CeEEEEECCC-CceEECCCCCCCCCC
Q 017381 330 -PEILYYNVAR-RTWHWLPSCPSLPHK 354 (372)
Q Consensus 330 -~~v~~yd~~~-~~w~~v~~~~~~~~~ 354 (372)
..+.+||+++ ++|+.++.+|.++..
T Consensus 479 ~~~ve~Ydp~~~~~W~~~~~m~~~r~~ 505 (557)
T PHA02713 479 KTCIFRYNTNTYNGWELITTTESRLSA 505 (557)
T ss_pred ceeEEEecCCCCCCeeEccccCccccc
Confidence 2368999999 899999998876653
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.4e-17 Score=156.63 Aligned_cols=194 Identities=9% Similarity=0.065 Sum_probs=140.5
Q ss_pred ecCcEEEEecCC-----CceEEEEeccccceeccCCCCCCCCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCCcc
Q 017381 108 SSKGLLCFSLPS-----SSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWS 182 (372)
Q Consensus 108 s~~Gll~~~~~~-----~~~~~v~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~ 182 (372)
..++.+++.++. ...+..|||.+++|..+|+++.++...+.+.. +.+|+++||......++.||+.+++|.
T Consensus 269 ~~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~----~~~iYviGG~~~~~sve~ydp~~n~W~ 344 (480)
T PHA02790 269 HVGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPA----NNKLYVVGGLPNPTSVERWFHGDAAWV 344 (480)
T ss_pred EECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEE----CCEEEEECCcCCCCceEEEECCCCeEE
Confidence 355655555542 24678899999999999999876654433322 228999998755567999999999999
Q ss_pred ccccCCCCccccccCCCcccEEECCEEEEeeeCC---cEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCC
Q 017381 183 KFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEP---FSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEES 259 (372)
Q Consensus 183 ~~~~~~~p~~~~~~~~~~~~v~~~G~~y~~~~~~---~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~ 259 (372)
..+ ++|. .+..+.++.++|++|.+++.. ..+.+||+.+++|+.+. | +|..+.....++ .+
T Consensus 345 ~~~--~l~~----~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~-~-------m~~~r~~~~~~~---~~ 407 (480)
T PHA02790 345 NMP--SLLK----PRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGP-S-------TYYPHYKSCALV---FG 407 (480)
T ss_pred ECC--CCCC----CCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCC-C-------CCCccccceEEE---EC
Confidence 988 6664 223566889999999998732 45789999999999864 4 555544455554 89
Q ss_pred CeEEEEEeeecCCccceEEEEEEcCCC-CEEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeecC-----CeEE
Q 017381 260 NKLYLIGGVGRNGISTTMKLWELGCGG-NWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTW-----PEIL 333 (372)
Q Consensus 260 g~L~vv~~~~~~~~~~~i~vw~l~~~~-~W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~v~ 333 (372)
|+||++|+. .++|. ..+ +|+.+..|+... ....++..+|+||+.++.. ..+.
T Consensus 408 ~~IYv~GG~--------~e~yd--p~~~~W~~~~~m~~~r------------~~~~~~v~~~~IYviGG~~~~~~~~~ve 465 (480)
T PHA02790 408 RRLFLVGRN--------AEFYC--ESSNTWTLIDDPIYPR------------DNPELIIVDNKLLLIGGFYRGSYIDTIE 465 (480)
T ss_pred CEEEEECCc--------eEEec--CCCCcEeEcCCCCCCc------------cccEEEEECCEEEEECCcCCCcccceEE
Confidence 999999862 35664 444 499988876432 2244566788999998632 4589
Q ss_pred EEECCCCceEE
Q 017381 334 YYNVARRTWHW 344 (372)
Q Consensus 334 ~yd~~~~~w~~ 344 (372)
+||+++++|+-
T Consensus 466 ~Yd~~~~~W~~ 476 (480)
T PHA02790 466 VYNNRTYSWNI 476 (480)
T ss_pred EEECCCCeEEe
Confidence 99999999974
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.7e-17 Score=158.16 Aligned_cols=233 Identities=15% Similarity=0.081 Sum_probs=156.4
Q ss_pred ccCCCCCeeeecCCCCCCCCCceEEEEecCcEEEEecCC------CceEEEEeccccceeccCCCCCCCCceeEEEEeCC
Q 017381 81 YDSTHGTWRRLSLPYSLLLPSAATLLSSSKGLLCFSLPS------SSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTP 154 (372)
Q Consensus 81 ~d~~~~~w~~l~~~~~~~~~~~~~~~~s~~Gll~~~~~~------~~~~~v~NP~t~~~~~lP~~~~~~~~~~~~~~~~~ 154 (372)
|++...+|..++-. +. ...+..+..++.+++.++. .+.++.|||.+++|..+|+++.++..+..+...
T Consensus 269 ~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~-- 342 (534)
T PHA03098 269 NYSPLSEINTIIDI---HY-VYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFN-- 342 (534)
T ss_pred cchhhhhcccccCc---cc-cccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEEC--
Confidence 45555666655311 11 1222344556655555442 136899999999999999988766544433322
Q ss_pred CCEEEEEEeecCC---CceEEEEECCCCCccccccCCCCccccccCCCcccEEECCEEEEeeeC------CcEEEEEecC
Q 017381 155 SGYKIFMLFAKSF---PNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPE------PFSIVRFDLE 225 (372)
Q Consensus 155 ~~ykvv~~~~~~~---~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~~y~~~~~------~~~i~~yD~~ 225 (372)
-+|+++||... ...+++||+.+++|+..+ ++|. .+..+.++.++|++|.+++. ...+..||+.
T Consensus 343 --~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~--~lp~----~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~ 414 (534)
T PHA03098 343 --NRIYVIGGIYNSISLNTVESWKPGESKWREEP--PLIF----PRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLN 414 (534)
T ss_pred --CEEEEEeCCCCCEecceEEEEcCCCCceeeCC--CcCc----CCccceEEEECCEEEEECCcCCCCcccceEEEEeCC
Confidence 27999998642 347999999999999888 6664 22456678899999999872 1468999999
Q ss_pred CCeeeccCCCCccccccCCCcccccceeeeccCCCeEEEEEeeecCCc-cceEEEEEEcCCCC-EEEEEecChHHHHHhh
Q 017381 226 NGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGI-STTMKLWELGCGGN-WIEVERVPEMMCRKFM 303 (372)
Q Consensus 226 ~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~~~-~~~i~vw~l~~~~~-W~~v~~lp~~~~~~~~ 303 (372)
+++|+.+. + +|..+..+..+. .+|+||++||...... ...-.+|.+|..++ |+++..+|...
T Consensus 415 t~~W~~~~-~-------~p~~r~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r----- 478 (534)
T PHA03098 415 TNKWSKGS-P-------LPISHYGGCAIY---HDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPR----- 478 (534)
T ss_pred CCeeeecC-C-------CCccccCceEEE---ECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCccc-----
Confidence 99999864 4 666555555553 7999999998532111 01123777787765 99987765321
Q ss_pred hhccCCCceEEEEeeCCEEEEEeec-----CCeEEEEECCCCceEECCCCCC
Q 017381 304 SVCYHNYDHVYCFWHQGMICVCCYT-----WPEILYYNVARRTWHWLPSCPS 350 (372)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~v~~yd~~~~~w~~v~~~~~ 350 (372)
.....+..++.||+.++. .+.+.+||+++++|+.++..|-
T Consensus 479 -------~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~ 523 (534)
T PHA03098 479 -------INASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKFPK 523 (534)
T ss_pred -------ccceEEEECCEEEEEcCCcCCcccceeEEEeCCCCEEEecCCCcc
Confidence 112233457888888753 2469999999999999987553
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.1e-16 Score=145.83 Aligned_cols=224 Identities=17% Similarity=0.215 Sum_probs=145.4
Q ss_pred EEEecCcEEEEecC-CCceEEEEec--cccceeccCCCCC-CCCceeEEEEeCCCCEEEEEEeecCC---------CceE
Q 017381 105 LLSSSKGLLCFSLP-SSSSFLVCNL--VTLSSRTIDFPTY-PFDFELLTLVSTPSGYKIFMLFAKSF---------PNYA 171 (372)
Q Consensus 105 ~~~s~~Gll~~~~~-~~~~~~v~NP--~t~~~~~lP~~~~-~~~~~~~~~~~~~~~ykvv~~~~~~~---------~~~~ 171 (372)
..++.++-|++.++ ..+.++++|+ .+++|..+|+++. ++....++... -+|+++||... ...+
T Consensus 12 ~~~~~~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~----~~iYv~GG~~~~~~~~~~~~~~~v 87 (346)
T TIGR03547 12 TGAIIGDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAID----GKLYVFGGIGKANSEGSPQVFDDV 87 (346)
T ss_pred eEEEECCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccceEEEEC----CEEEEEeCCCCCCCCCcceecccE
Confidence 34456776666554 3357888885 6788999999873 44443333322 28999998632 2479
Q ss_pred EEEECCCCCccccccCCCCccccccCCCcccE-EECCEEEEeeeCC----------------------------------
Q 017381 172 FVYDSTDQSWSKFDIDGFPSMILSQSSHQEGV-FYKGSLYFTTPEP---------------------------------- 216 (372)
Q Consensus 172 ~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v-~~~G~~y~~~~~~---------------------------------- 216 (372)
++||+.+++|+.++. .+|. .+..+.++ .++|+||.+++..
T Consensus 88 ~~Yd~~~~~W~~~~~-~~p~----~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (346)
T TIGR03547 88 YRYDPKKNSWQKLDT-RSPV----GLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPE 162 (346)
T ss_pred EEEECCCCEEecCCC-CCCC----cccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChh
Confidence 999999999999861 2222 11223334 6899999997631
Q ss_pred -----cEEEEEecCCCeeeccCCCCccccccCCC-cccccceeeeccCCCeEEEEEeeecCC-ccceEEEEEEcCCCC-E
Q 017381 217 -----FSIVRFDLENGIWETPNDANDHMTMMLPH-ELTFFRLVNDGEESNKLYLIGGVGRNG-ISTTMKLWELGCGGN-W 288 (372)
Q Consensus 217 -----~~i~~yD~~~~~w~~i~~p~~~~~~~~p~-~~~~~~lv~e~~~~g~L~vv~~~~~~~-~~~~i~vw~l~~~~~-W 288 (372)
..+.+||+.+++|+.+. + +|. .+....+++ .+|+||++++..... ....+.++.++.+.+ |
T Consensus 163 ~~~~~~~v~~YDp~t~~W~~~~-~-------~p~~~r~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W 231 (346)
T TIGR03547 163 DYFWNKNVLSYDPSTNQWRNLG-E-------NPFLGTAGSAIVH---KGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEW 231 (346)
T ss_pred HcCccceEEEEECCCCceeECc-c-------CCCCcCCCceEEE---ECCEEEEEeeeeCCCccchheEEEEecCCCcee
Confidence 46899999999999874 5 664 344455553 899999999854221 112344455555544 9
Q ss_pred EEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeecC----------------------CeEEEEECCCCceEECC
Q 017381 289 IEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTW----------------------PEILYYNVARRTWHWLP 346 (372)
Q Consensus 289 ~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----------------------~~v~~yd~~~~~w~~v~ 346 (372)
+++..||........ ......++..+++||+.++.. ..+.+||+++++|+.++
T Consensus 232 ~~~~~m~~~r~~~~~-----~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~ 306 (346)
T TIGR03547 232 NKLPPLPPPKSSSQE-----GLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVG 306 (346)
T ss_pred eecCCCCCCCCCccc-----cccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccC
Confidence 999888643210000 001122445788899987531 14789999999999999
Q ss_pred CCCCCCC
Q 017381 347 SCPSLPH 353 (372)
Q Consensus 347 ~~~~~~~ 353 (372)
.+|.++.
T Consensus 307 ~lp~~~~ 313 (346)
T TIGR03547 307 KLPQGLA 313 (346)
T ss_pred CCCCCce
Confidence 8887653
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.1e-16 Score=143.02 Aligned_cols=243 Identities=12% Similarity=0.082 Sum_probs=150.5
Q ss_pred CCCCeeeecCCC-CCCCCCceEEEEecCcEEEEecCC-------CceEEEEeccccceeccCCCC-CCCC-ceeEEEEeC
Q 017381 84 THGTWRRLSLPY-SLLLPSAATLLSSSKGLLCFSLPS-------SSSFLVCNLVTLSSRTIDFPT-YPFD-FELLTLVST 153 (372)
Q Consensus 84 ~~~~w~~l~~~~-~~~~~~~~~~~~s~~Gll~~~~~~-------~~~~~v~NP~t~~~~~lP~~~-~~~~-~~~~~~~~~ 153 (372)
....|..++... ..|.++..+.+++.++.|++.++. .+.+++||+.+++|..+++++ .++. ...++.+..
T Consensus 5 ~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~ 84 (341)
T PLN02153 5 LQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV 84 (341)
T ss_pred cCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE
Confidence 456788775421 123344444556667776665542 136899999999999998764 2332 222333222
Q ss_pred CCCEEEEEEeecCC---CceEEEEECCCCCccccccCCCCccccc-cCCCcccEEECCEEEEeeeCC-----------cE
Q 017381 154 PSGYKIFMLFAKSF---PNYAFVYDSTDQSWSKFDIDGFPSMILS-QSSHQEGVFYKGSLYFTTPEP-----------FS 218 (372)
Q Consensus 154 ~~~ykvv~~~~~~~---~~~~~vy~s~~~~W~~~~~~~~p~~~~~-~~~~~~~v~~~G~~y~~~~~~-----------~~ 218 (372)
. -+|+++||... ...+++||+++++|+.++ .++....+ .+..+.++..++++|++++.. ..
T Consensus 85 ~--~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~--~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~ 160 (341)
T PLN02153 85 G--TKLYIFGGRDEKREFSDFYSYDTVKNEWTFLT--KLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRT 160 (341)
T ss_pred C--CEEEEECCCCCCCccCcEEEEECCCCEEEEec--cCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccce
Confidence 2 28999988532 247999999999999876 44210001 234566788999999997631 25
Q ss_pred EEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeEEEEEeeecC----C--ccceEEEEEEcCCCC-EEEE
Q 017381 219 IVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRN----G--ISTTMKLWELGCGGN-WIEV 291 (372)
Q Consensus 219 i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~----~--~~~~i~vw~l~~~~~-W~~v 291 (372)
+.+||+++++|..+..++. .|..+..+.+++ .+|+||++++.... + ....-+++.+|...+ |+++
T Consensus 161 v~~yd~~~~~W~~l~~~~~-----~~~~r~~~~~~~---~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~ 232 (341)
T PLN02153 161 IEAYNIADGKWVQLPDPGE-----NFEKRGGAGFAV---VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEV 232 (341)
T ss_pred EEEEECCCCeEeeCCCCCC-----CCCCCCcceEEE---ECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEec
Confidence 8899999999998642210 123333344553 89999999874210 0 011124566666655 9998
Q ss_pred EecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeec--------------CCeEEEEECCCCceEECCC
Q 017381 292 ERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYT--------------WPEILYYNVARRTWHWLPS 347 (372)
Q Consensus 292 ~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------------~~~v~~yd~~~~~w~~v~~ 347 (372)
..+.... .......++..++.||+.++. .+.+.+||+++++|+.+..
T Consensus 233 ~~~g~~P---------~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~ 293 (341)
T PLN02153 233 ETTGAKP---------SARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGE 293 (341)
T ss_pred cccCCCC---------CCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccC
Confidence 6532110 011223345567888888763 1368999999999999874
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.5e-15 Score=144.79 Aligned_cols=239 Identities=10% Similarity=0.047 Sum_probs=153.2
Q ss_pred CCeeeecCCCCCCCCCceEEEEecCcEEEEecCC-------CceEEEEeccccceeccCCCC-CCC-CceeEEEEeCCCC
Q 017381 86 GTWRRLSLPYSLLLPSAATLLSSSKGLLCFSLPS-------SSSFLVCNLVTLSSRTIDFPT-YPF-DFELLTLVSTPSG 156 (372)
Q Consensus 86 ~~w~~l~~~~~~~~~~~~~~~~s~~Gll~~~~~~-------~~~~~v~NP~t~~~~~lP~~~-~~~-~~~~~~~~~~~~~ 156 (372)
.+|.+++.....|.++..+.++..++.|++.++. .+.+++||+.+++|..+|+.. .+. .+..++.+...
T Consensus 151 ~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~-- 228 (470)
T PLN02193 151 GKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIG-- 228 (470)
T ss_pred ceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEEC--
Confidence 6899886432234445555555666666555442 135899999999999887642 222 12222222211
Q ss_pred EEEEEEeecCC---CceEEEEECCCCCccccccCCCCccccccCCCcccEEECCEEEEeeeC-----CcEEEEEecCCCe
Q 017381 157 YKIFMLFAKSF---PNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPE-----PFSIVRFDLENGI 228 (372)
Q Consensus 157 ykvv~~~~~~~---~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~~y~~~~~-----~~~i~~yD~~~~~ 228 (372)
-+|+++++... ...+++||+.+++|+.+. .++.... .+..+..+.+++++|++++. ...+.+||+.+++
T Consensus 229 ~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~--~~~~~P~-~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~ 305 (470)
T PLN02193 229 STLYVFGGRDASRQYNGFYSFDTTTNEWKLLT--PVEEGPT-PRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKK 305 (470)
T ss_pred CEEEEECCCCCCCCCccEEEEECCCCEEEEcC--cCCCCCC-CccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCE
Confidence 27899988542 358999999999999887 4421111 23456677889999999863 2458899999999
Q ss_pred eeccCCCCccccccCCCcccccceeeeccCCCeEEEEEeeecCCccceEEEEEEcCCCC-EEEEEecChHHHHHhhhhcc
Q 017381 229 WETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGN-WIEVERVPEMMCRKFMSVCY 307 (372)
Q Consensus 229 w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~~~~~-W~~v~~lp~~~~~~~~~~~~ 307 (372)
|+.+..++. +|..+..+.+++ .+|+||++++... ...-++|.+|..++ |+++..++....
T Consensus 306 W~~~~~~~~-----~~~~R~~~~~~~---~~gkiyviGG~~g---~~~~dv~~yD~~t~~W~~~~~~g~~P~-------- 366 (470)
T PLN02193 306 WFHCSTPGD-----SFSIRGGAGLEV---VQGKVWVVYGFNG---CEVDDVHYYDPVQDKWTQVETFGVRPS-------- 366 (470)
T ss_pred EEeCCCCCC-----CCCCCCCcEEEE---ECCcEEEEECCCC---CccCceEEEECCCCEEEEeccCCCCCC--------
Confidence 998754321 333344445553 7999999998431 12346777777665 999876521110
Q ss_pred CCCceEEEEeeCCEEEEEeecC--------------CeEEEEECCCCceEECCCCC
Q 017381 308 HNYDHVYCFWHQGMICVCCYTW--------------PEILYYNVARRTWHWLPSCP 349 (372)
Q Consensus 308 ~~~~~~~~~~~~~~i~~~~~~~--------------~~v~~yd~~~~~w~~v~~~~ 349 (372)
.+....++..++.||+.+... +.+.+||+.+++|++++..+
T Consensus 367 -~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~ 421 (470)
T PLN02193 367 -ERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFG 421 (470)
T ss_pred -CcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccCC
Confidence 112233456678888887531 24899999999999997543
|
|
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.8e-15 Score=139.10 Aligned_cols=226 Identities=15% Similarity=0.187 Sum_probs=143.6
Q ss_pred EEEecCcEEEEecC-CCceEEEEecc--ccceeccCCCCC-CCCceeEEEEeCCCCEEEEEEeecCC---------CceE
Q 017381 105 LLSSSKGLLCFSLP-SSSSFLVCNLV--TLSSRTIDFPTY-PFDFELLTLVSTPSGYKIFMLFAKSF---------PNYA 171 (372)
Q Consensus 105 ~~~s~~Gll~~~~~-~~~~~~v~NP~--t~~~~~lP~~~~-~~~~~~~~~~~~~~~ykvv~~~~~~~---------~~~~ 171 (372)
..++.++-|++.++ ....++++|+. +++|..+|+++. ++.....+... -+|+++||... ...+
T Consensus 33 ~~~~~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~----~~IYV~GG~~~~~~~~~~~~~~~v 108 (376)
T PRK14131 33 TGAIDNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFID----GKLYVFGGIGKTNSEGSPQVFDDV 108 (376)
T ss_pred eEEEECCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEEEC----CEEEEEcCCCCCCCCCceeEcccE
Confidence 34556776666443 34568888876 478999998763 44333222221 27999988542 2479
Q ss_pred EEEECCCCCccccccCCCCccccccCCCcccEE-ECCEEEEeeeCC----------------------------------
Q 017381 172 FVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVF-YKGSLYFTTPEP---------------------------------- 216 (372)
Q Consensus 172 ~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~-~~G~~y~~~~~~---------------------------------- 216 (372)
++||+.+++|+.++ ...+ .+ ...+.++. .+|+||.+++..
T Consensus 109 ~~YD~~~n~W~~~~--~~~p--~~-~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~ 183 (376)
T PRK14131 109 YKYDPKTNSWQKLD--TRSP--VG-LAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPE 183 (376)
T ss_pred EEEeCCCCEEEeCC--CCCC--Cc-ccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChh
Confidence 99999999999987 3211 11 12233444 799999998632
Q ss_pred -----cEEEEEecCCCeeeccCCCCccccccCCC-cccccceeeeccCCCeEEEEEeeecCCccceEEEE--EEcCCCC-
Q 017381 217 -----FSIVRFDLENGIWETPNDANDHMTMMLPH-ELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLW--ELGCGGN- 287 (372)
Q Consensus 217 -----~~i~~yD~~~~~w~~i~~p~~~~~~~~p~-~~~~~~lv~e~~~~g~L~vv~~~~~~~~~~~i~vw--~l~~~~~- 287 (372)
..+.+||+.+++|+.+. + +|. .+....++. .+++||++++....+ ....++| +++.+..
T Consensus 184 ~~~~~~~v~~YD~~t~~W~~~~-~-------~p~~~~~~~a~v~---~~~~iYv~GG~~~~~-~~~~~~~~~~~~~~~~~ 251 (376)
T PRK14131 184 DYFFNKEVLSYDPSTNQWKNAG-E-------SPFLGTAGSAVVI---KGNKLWLINGEIKPG-LRTDAVKQGKFTGNNLK 251 (376)
T ss_pred hcCcCceEEEEECCCCeeeECC-c-------CCCCCCCcceEEE---ECCEEEEEeeeECCC-cCChhheEEEecCCCcc
Confidence 35899999999999864 4 554 444455553 799999999854221 2334444 5555544
Q ss_pred EEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeecC----------------------CeEEEEECCCCceEEC
Q 017381 288 WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTW----------------------PEILYYNVARRTWHWL 345 (372)
Q Consensus 288 W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----------------------~~v~~yd~~~~~w~~v 345 (372)
|+++..||..... .... ......++..+++||+.++.. ..+.+||+++++|+.+
T Consensus 252 W~~~~~~p~~~~~-~~~~---~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~ 327 (376)
T PRK14131 252 WQKLPDLPPAPGG-SSQE---GVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKV 327 (376)
T ss_pred eeecCCCCCCCcC-CcCC---ccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCccccc
Confidence 9999888753210 0000 001122345678888887521 1256899999999999
Q ss_pred CCCCCCCCCC
Q 017381 346 PSCPSLPHKW 355 (372)
Q Consensus 346 ~~~~~~~~~~ 355 (372)
+.+|.++...
T Consensus 328 ~~lp~~r~~~ 337 (376)
T PRK14131 328 GELPQGLAYG 337 (376)
T ss_pred CcCCCCccce
Confidence 9888776543
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2e-15 Score=145.76 Aligned_cols=185 Identities=11% Similarity=0.043 Sum_probs=132.5
Q ss_pred ccccccCCCCCeeeecCCCCCCCCCceEEEEecCcEEEEecCC--CceEEEEeccccceeccCCCCCCCCceeEEEEeCC
Q 017381 77 QYPLYDSTHGTWRRLSLPYSLLLPSAATLLSSSKGLLCFSLPS--SSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTP 154 (372)
Q Consensus 77 ~~~~~d~~~~~w~~l~~~~~~~~~~~~~~~~s~~Gll~~~~~~--~~~~~v~NP~t~~~~~lP~~~~~~~~~~~~~~~~~ 154 (372)
....||+..++|..++. ++.++.....++.+|.|++.++. ...+..|||.+++|..+|+++.++...+.+....
T Consensus 288 ~v~~Ydp~~~~W~~~~~---m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g- 363 (480)
T PHA02790 288 NAIAVNYISNNWIPIPP---MNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINN- 363 (480)
T ss_pred eEEEEECCCCEEEECCC---CCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECC-
Confidence 35679999999998862 22334344566788988777653 2468899999999999999987765444333222
Q ss_pred CCEEEEEEeecCC-CceEEEEECCCCCccccccCCCCccccccCCCcccEEECCEEEEeeeCCcEEEEEecCCCeeeccC
Q 017381 155 SGYKIFMLFAKSF-PNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWETPN 233 (372)
Q Consensus 155 ~~ykvv~~~~~~~-~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~~y~~~~~~~~i~~yD~~~~~w~~i~ 233 (372)
+|+++||... ...+++||+++++|+..+ .++. .+..+.++.++|++|++++. ..+||+.+++|+.+.
T Consensus 364 ---~IYviGG~~~~~~~ve~ydp~~~~W~~~~--~m~~----~r~~~~~~~~~~~IYv~GG~---~e~ydp~~~~W~~~~ 431 (480)
T PHA02790 364 ---VIYVIGGHSETDTTTEYLLPNHDQWQFGP--STYY----PHYKSCALVFGRRLFLVGRN---AEFYCESSNTWTLID 431 (480)
T ss_pred ---EEEEecCcCCCCccEEEEeCCCCEEEeCC--CCCC----ccccceEEEECCEEEEECCc---eEEecCCCCcEeEcC
Confidence 8999998643 357899999999999988 5654 12345677899999999853 678999999999874
Q ss_pred CCCccccccCCCcccccceeeeccCCCeEEEEEeeecCCccceEEEEEEcCCCC-EEE
Q 017381 234 DANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGN-WIE 290 (372)
Q Consensus 234 ~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~~~~~-W~~ 290 (372)
| +|..+....+++ .+|+||++||.........+++| |+..+ |+.
T Consensus 432 -~-------m~~~r~~~~~~v---~~~~IYviGG~~~~~~~~~ve~Y--d~~~~~W~~ 476 (480)
T PHA02790 432 -D-------PIYPRDNPELII---VDNKLLLIGGFYRGSYIDTIEVY--NNRTYSWNI 476 (480)
T ss_pred -C-------CCCCccccEEEE---ECCEEEEECCcCCCcccceEEEE--ECCCCeEEe
Confidence 5 666555566664 89999999985422222445555 55554 974
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.5e-14 Score=133.12 Aligned_cols=201 Identities=14% Similarity=0.135 Sum_probs=130.2
Q ss_pred eEEEEe-cccc-ceeccCCCCCCCCceeEEEEeCCCCEEEEEEeecCC---CceEEEEECCCCCc----cccccCCCCcc
Q 017381 122 SFLVCN-LVTL-SSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSF---PNYAFVYDSTDQSW----SKFDIDGFPSM 192 (372)
Q Consensus 122 ~~~v~N-P~t~-~~~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~~---~~~~~vy~s~~~~W----~~~~~~~~p~~ 192 (372)
.+++++ +..+ +|..+++++.++.....+... -+|+++|+... ...++.||..+++| +..+ ++|.
T Consensus 40 ~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~----~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~--~lp~- 112 (323)
T TIGR03548 40 GIYIAKDENSNLKWVKDGQLPYEAAYGASVSVE----NGIYYIGGSNSSERFSSVYRITLDESKEELICETIG--NLPF- 112 (323)
T ss_pred eeEEEecCCCceeEEEcccCCccccceEEEEEC----CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcC--CCCc-
Confidence 466664 4433 799999888766543322221 27888887542 24889999999998 4454 4543
Q ss_pred ccccCCCcccEEECCEEEEeeeC-----CcEEEEEecCCCeeeccCCCCccccccCCC-cccccceeeeccCCCeEEEEE
Q 017381 193 ILSQSSHQEGVFYKGSLYFTTPE-----PFSIVRFDLENGIWETPNDANDHMTMMLPH-ELTFFRLVNDGEESNKLYLIG 266 (372)
Q Consensus 193 ~~~~~~~~~~v~~~G~~y~~~~~-----~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~-~~~~~~lv~e~~~~g~L~vv~ 266 (372)
.+..+.+++++|++|.+++. ...+.+||+.+++|+.+. + +|. .+..+.+++ .+++||+++
T Consensus 113 ---~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~-~-------~p~~~r~~~~~~~---~~~~iYv~G 178 (323)
T TIGR03548 113 ---TFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELP-D-------FPGEPRVQPVCVK---LQNELYVFG 178 (323)
T ss_pred ---CccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECC-C-------CCCCCCCcceEEE---ECCEEEEEc
Confidence 22346678899999999863 246899999999999864 3 443 333444443 899999999
Q ss_pred eeecCCccceEEEEEEcCCCC-EEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeecC----------------
Q 017381 267 GVGRNGISTTMKLWELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTW---------------- 329 (372)
Q Consensus 267 ~~~~~~~~~~i~vw~l~~~~~-W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---------------- 329 (372)
+... ....+++.+|...+ |+++..++....... ......++..+++||+.++..
T Consensus 179 G~~~---~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~------~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~ 249 (323)
T TIGR03548 179 GGSN---IAYTDGYKYSPKKNQWQKVADPTTDSEPIS------LLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKD 249 (323)
T ss_pred CCCC---ccccceEEEecCCCeeEECCCCCCCCCcee------ccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccc
Confidence 8531 12235677777665 998876532100000 001122334567888876432
Q ss_pred ---------------------CeEEEEECCCCceEECCCCCCCC
Q 017381 330 ---------------------PEILYYNVARRTWHWLPSCPSLP 352 (372)
Q Consensus 330 ---------------------~~v~~yd~~~~~w~~v~~~~~~~ 352 (372)
+.+.+||+.+++|+.++.+|..+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~ 293 (323)
T TIGR03548 250 ESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFFA 293 (323)
T ss_pred hhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccccccc
Confidence 46999999999999999777433
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PLN03215 ascorbic acid mannose pathway regulator 1; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-14 Score=132.10 Aligned_cols=289 Identities=15% Similarity=0.131 Sum_probs=152.3
Q ss_pred hhcCCCHHHHHHHHccCC-chhhhHHhhchhhhhhcccChhhhccccccCCCCceEEEEeC-CCCCCccccccCCCC---
Q 017381 12 IWSRLPEDLLDHVLSFLP-PKMLLKLRSTCKHFNSLLFSPSFLSKTKCSSSAFSCFILLSH-PQCYDQYPLYDSTHG--- 86 (372)
Q Consensus 12 ~~~~LP~dll~~IL~rLp-~~~l~r~r~Vck~W~~~i~~~~F~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~~--- 86 (372)
.|++||+||+..|..||| ..++.|+|+|||+||+.+.... +. ...++.|+.+...- +... ....+....
T Consensus 3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~---~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 76 (373)
T PLN03215 3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVG---KK-NPFRTRPLILFNPINPSET--LTDDRSYISRPG 76 (373)
T ss_pred ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccccc---cc-CCcccccccccCcccCCCC--cccccccccccc
Confidence 599999999999999997 8899999999999999876311 00 00111122221110 0000 000111000
Q ss_pred ------CeeeecCCCCCCCCCceEEEEecCcEEEEecC--CCceEEEEeccccceeccCCCCCCC--------Cce-eE-
Q 017381 87 ------TWRRLSLPYSLLLPSAATLLSSSKGLLCFSLP--SSSSFLVCNLVTLSSRTIDFPTYPF--------DFE-LL- 148 (372)
Q Consensus 87 ------~w~~l~~~~~~~~~~~~~~~~s~~Gll~~~~~--~~~~~~v~NP~t~~~~~lP~~~~~~--------~~~-~~- 148 (372)
...+++.+ -++..|+|..... ..+++.+.||+++.-...|+..... ... .+
T Consensus 77 ~~ls~~~~~r~~~~-----------~~~~~~WLik~~~~~~~~~~~Ll~PLsr~~~~~~~~~lnll~f~v~ei~~~y~l~ 145 (373)
T PLN03215 77 AFLSRAAFFRVTLS-----------SSPSKGWLIKSDMDVNSGRFHLLNPLSRLPLRHSSESVDLLEFTVSEIREAYQVL 145 (373)
T ss_pred ceeeeeEEEEeecC-----------CCCCCCcEEEEeccccCCccEecCccccCccCCCCccceeeeeEEEEccceEEEE
Confidence 01111110 0245675554332 3468889999999977766521110 000 00
Q ss_pred EEE-----------------eCCC--CEEEEEEeecCCCceEEEEECCCCCccccccCCCCccccccCCCcccEEECCEE
Q 017381 149 TLV-----------------STPS--GYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSL 209 (372)
Q Consensus 149 ~~~-----------------~~~~--~ykvv~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~~ 209 (372)
+.. ..++ .|-|++++.. .....++ .+.|+.++ ... ......++++|++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~i~~~---g~l~~w~--~~~Wt~l~--~~~------~~~~DIi~~kGkf 212 (373)
T PLN03215 146 DWAKRRETRPGYQRSALVKVKEGDNHRDGVLGIGRD---GKINYWD--GNVLKALK--QMG------YHFSDIIVHKGQT 212 (373)
T ss_pred ecccccccccceeEEEEEEeecCCCcceEEEEEeec---CcEeeec--CCeeeEcc--CCC------ceeeEEEEECCEE
Confidence 000 0001 1222222211 1222232 57888886 322 2356789999999
Q ss_pred EEeeeCCcEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeEEEEEeeecCC------------ccceE
Q 017381 210 YFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNG------------ISTTM 277 (372)
Q Consensus 210 y~~~~~~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~~------------~~~~i 277 (372)
|.+.... .+.++|..-+ -..+..+- ..++..........+| | +.|+|++|....... ....+
T Consensus 213 YAvD~~G-~l~~i~~~l~-i~~v~~~i-~~~~~~g~~~~~~yLV-E--s~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f 286 (373)
T PLN03215 213 YALDSIG-IVYWINSDLE-FSRFGTSL-DENITDGCWTGDRRFV-E--CCGELYIVERLPKESTWKRKADGFEYSRTVGF 286 (373)
T ss_pred EEEcCCC-eEEEEecCCc-eeeeccee-cccccCCcccCceeEE-E--ECCEEEEEEEEccCcccccccccccccceeEE
Confidence 9996543 3666663311 11111110 0000001111235688 6 899999998743110 12468
Q ss_pred EEEEEcCCCC-EEEEEecChHHHHHhhhhccCCCceEEEE-------eeCCEEEEEeecCCeEEEEECCCCceEEC
Q 017381 278 KLWELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCF-------WHQGMICVCCYTWPEILYYNVARRTWHWL 345 (372)
Q Consensus 278 ~vw~l~~~~~-W~~v~~lp~~~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~v~~yd~~~~~w~~v 345 (372)
+||++|.... |+++.+++.... |++. ....++ ..+|.||+..+ ....+||++.++-..+
T Consensus 287 ~VfklD~~~~~WveV~sLgd~aL--FlG~-----~~s~sv~a~e~pG~k~NcIYFtdd--~~~~v~~~~dg~~~~~ 353 (373)
T PLN03215 287 KVYKFDDELAKWMEVKTLGDNAF--VMAT-----DTCFSVLAHEFYGCLPNSIYFTED--TMPKVFKLDNGNGSSI 353 (373)
T ss_pred EEEEEcCCCCcEEEecccCCeEE--EEEC-----CccEEEecCCCCCccCCEEEEECC--CcceEEECCCCCccce
Confidence 9999987755 999999986531 1111 001111 24689999874 3456999999985543
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.1e-14 Score=132.07 Aligned_cols=202 Identities=11% Similarity=0.102 Sum_probs=130.4
Q ss_pred ccccccCCCCCeeeecCCCCCCCC-CceEEEEecCcEEEEecCC-----CceEEEEeccccceeccCCC-----CCCCCc
Q 017381 77 QYPLYDSTHGTWRRLSLPYSLLLP-SAATLLSSSKGLLCFSLPS-----SSSFLVCNLVTLSSRTIDFP-----TYPFDF 145 (372)
Q Consensus 77 ~~~~~d~~~~~w~~l~~~~~~~~~-~~~~~~~s~~Gll~~~~~~-----~~~~~v~NP~t~~~~~lP~~-----~~~~~~ 145 (372)
.+..||+..++|..++.....+.. ...+.+++.++.|++.++. .+.+++|||.+++|..++++ |.++..
T Consensus 51 ~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~ 130 (341)
T PLN02153 51 DLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTF 130 (341)
T ss_pred cEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCcee
Confidence 467799999999987532111211 1234456667766665542 24789999999999999876 333333
Q ss_pred eeEEEEeCCCCEEEEEEeecCC---------CceEEEEECCCCCccccccCCCCccccccCCCcccEEECCEEEEeeeC-
Q 017381 146 ELLTLVSTPSGYKIFMLFAKSF---------PNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPE- 215 (372)
Q Consensus 146 ~~~~~~~~~~~ykvv~~~~~~~---------~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~~y~~~~~- 215 (372)
+.++... -+|+++|+... ...+++||+++++|+.++ .+.. ....+..+..+.++|++|.+++.
T Consensus 131 ~~~~~~~----~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~--~~~~-~~~~r~~~~~~~~~~~iyv~GG~~ 203 (341)
T PLN02153 131 HSMASDE----NHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLP--DPGE-NFEKRGGAGFAVVQGKIWVVYGFA 203 (341)
T ss_pred eEEEEEC----CEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCC--CCCC-CCCCCCcceEEEECCeEEEEeccc
Confidence 3322222 27999988531 137899999999999887 3321 11123445577899999998642
Q ss_pred ------------CcEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeEEEEEeeecC-------Cccce
Q 017381 216 ------------PFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRN-------GISTT 276 (372)
Q Consensus 216 ------------~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~-------~~~~~ 276 (372)
...+.+||+.+++|+.+...+. +|..+..+..++ .+++||++++.... .....
T Consensus 204 ~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~-----~P~~r~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~~~~~ 275 (341)
T PLN02153 204 TSILPGGKSDYESNAVQFFDPASGKWTEVETTGA-----KPSARSVFAHAV---VGKYIIIFGGEVWPDLKGHLGPGTLS 275 (341)
T ss_pred cccccCCccceecCceEEEEcCCCcEEeccccCC-----CCCCcceeeeEE---ECCEEEEECcccCCcccccccccccc
Confidence 1358999999999998742111 455444445553 79999999995211 01112
Q ss_pred EEEEEEcCCCC-EEEEEe
Q 017381 277 MKLWELGCGGN-WIEVER 293 (372)
Q Consensus 277 i~vw~l~~~~~-W~~v~~ 293 (372)
-++|.+|..++ |+++..
T Consensus 276 n~v~~~d~~~~~W~~~~~ 293 (341)
T PLN02153 276 NEGYALDTETLVWEKLGE 293 (341)
T ss_pred ccEEEEEcCccEEEeccC
Confidence 37899988766 998864
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.3e-14 Score=138.51 Aligned_cols=194 Identities=14% Similarity=0.154 Sum_probs=136.1
Q ss_pred ccccccCCCCCeeeecCCCCCCCCCceEEEEecCcEEEEecCC-----CceEEEEeccccceeccCCCCCCCCceeEEEE
Q 017381 77 QYPLYDSTHGTWRRLSLPYSLLLPSAATLLSSSKGLLCFSLPS-----SSSFLVCNLVTLSSRTIDFPTYPFDFELLTLV 151 (372)
Q Consensus 77 ~~~~~d~~~~~w~~l~~~~~~~~~~~~~~~~s~~Gll~~~~~~-----~~~~~v~NP~t~~~~~lP~~~~~~~~~~~~~~ 151 (372)
.+..||+..++|..++ .++.++..+.+++.+|-|++.++. .+.+.+|||.+++|..+++++.++.....+..
T Consensus 312 ~v~~yd~~~~~W~~~~---~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~ 388 (534)
T PHA03098 312 SVVSYDTKTKSWNKVP---ELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNV 388 (534)
T ss_pred cEEEEeCCCCeeeECC---CCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEE
Confidence 4567999999998775 223334444566678866665542 24688999999999999998877655444332
Q ss_pred eCCCCEEEEEEeecCC----CceEEEEECCCCCccccccCCCCccccccCCCcccEEECCEEEEeeeCC--------cEE
Q 017381 152 STPSGYKIFMLFAKSF----PNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEP--------FSI 219 (372)
Q Consensus 152 ~~~~~ykvv~~~~~~~----~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~~y~~~~~~--------~~i 219 (372)
. -+|+++||... ...+++||+.+++|+..+ .+|. .+..+.++.++|++|.+++.. ..+
T Consensus 389 ~----~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~--~~p~----~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v 458 (534)
T PHA03098 389 N----NLIYVIGGISKNDELLKTVECFSLNTNKWSKGS--PLPI----SHYGGCAIYHDGKIYVIGGISYIDNIKVYNIV 458 (534)
T ss_pred C----CEEEEECCcCCCCcccceEEEEeCCCCeeeecC--CCCc----cccCceEEEECCEEEEECCccCCCCCcccceE
Confidence 2 28999988432 258999999999999988 6664 223456788999999998631 248
Q ss_pred EEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeEEEEEeeecCCccceEEEEEEcCCCC-EEEEEecCh
Q 017381 220 VRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGN-WIEVERVPE 296 (372)
Q Consensus 220 ~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~~~~~-W~~v~~lp~ 296 (372)
.+||+.+++|+.+. + +|..+....+++ .+|+||++||....... -.|+.+|..++ |+.+..+|.
T Consensus 459 ~~yd~~~~~W~~~~-~-------~~~~r~~~~~~~---~~~~iyv~GG~~~~~~~--~~v~~yd~~~~~W~~~~~~p~ 523 (534)
T PHA03098 459 ESYNPVTNKWTELS-S-------LNFPRINASLCI---FNNKIYVVGGDKYEYYI--NEIEVYDDKTNTWTLFCKFPK 523 (534)
T ss_pred EEecCCCCceeeCC-C-------CCcccccceEEE---ECCEEEEEcCCcCCccc--ceeEEEeCCCCEEEecCCCcc
Confidence 99999999999874 3 454444445553 79999999985422212 24666676665 998887663
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.1e-13 Score=123.76 Aligned_cols=219 Identities=13% Similarity=0.155 Sum_probs=136.5
Q ss_pred CccccccC--CCCCeeeec-CCCCCCCCCceEEEEecCcEEEEecCC-----------CceEEEEeccccceeccCCCCC
Q 017381 76 DQYPLYDS--THGTWRRLS-LPYSLLLPSAATLLSSSKGLLCFSLPS-----------SSSFLVCNLVTLSSRTIDFPTY 141 (372)
Q Consensus 76 ~~~~~~d~--~~~~w~~l~-~~~~~~~~~~~~~~~s~~Gll~~~~~~-----------~~~~~v~NP~t~~~~~lP~~~~ 141 (372)
..+..||+ ..++|..++ +|. ..+....+++.+|-|++.++. ...++.|||.+++|..++.+ .
T Consensus 29 ~~~~~~d~~~~~~~W~~l~~~p~---~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~-~ 104 (346)
T TIGR03547 29 TSWYKLDLKKPSKGWQKIADFPG---GPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTR-S 104 (346)
T ss_pred CeeEEEECCCCCCCceECCCCCC---CCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCC-C
Confidence 34556664 567899875 331 133444567778877776542 13688999999999999842 2
Q ss_pred CCCceeEEEEeCCCCEEEEEEeecCC-------------------------------------CceEEEEECCCCCcccc
Q 017381 142 PFDFELLTLVSTPSGYKIFMLFAKSF-------------------------------------PNYAFVYDSTDQSWSKF 184 (372)
Q Consensus 142 ~~~~~~~~~~~~~~~ykvv~~~~~~~-------------------------------------~~~~~vy~s~~~~W~~~ 184 (372)
++.+.+.+... ...-+|+++|+... ...+++||+.+++|+.+
T Consensus 105 p~~~~~~~~~~-~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~ 183 (346)
T TIGR03547 105 PVGLLGASGFS-LHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNL 183 (346)
T ss_pred CCcccceeEEE-EeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeEC
Confidence 33222221110 01228999988531 15799999999999999
Q ss_pred ccCCCCccccccCCCcccEEECCEEEEeeeCC------cEEEEEec--CCCeeeccCCCCccccccCCCcc-------cc
Q 017381 185 DIDGFPSMILSQSSHQEGVFYKGSLYFTTPEP------FSIVRFDL--ENGIWETPNDANDHMTMMLPHEL-------TF 249 (372)
Q Consensus 185 ~~~~~p~~~~~~~~~~~~v~~~G~~y~~~~~~------~~i~~yD~--~~~~w~~i~~p~~~~~~~~p~~~-------~~ 249 (372)
+ .+|.. .+..+..+.++|+||++++.. ..+..||+ .+++|+.+. + +|..+ ..
T Consensus 184 ~--~~p~~---~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~-~-------m~~~r~~~~~~~~~ 250 (346)
T TIGR03547 184 G--ENPFL---GTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLP-P-------LPPPKSSSQEGLAG 250 (346)
T ss_pred c--cCCCC---cCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecC-C-------CCCCCCCccccccE
Confidence 8 66531 123455678899999998631 23455654 667998764 4 44321 12
Q ss_pred cceeeeccCCCeEEEEEeeecCC-----------------ccceEEEEEEcCCCCEEEEEecChHHHHHhhhhccCCCce
Q 017381 250 FRLVNDGEESNKLYLIGGVGRNG-----------------ISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDH 312 (372)
Q Consensus 250 ~~lv~e~~~~g~L~vv~~~~~~~-----------------~~~~i~vw~l~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~ 312 (372)
+..++ .+|+||++++..... ....+++|..+ .++|+.+..||... ..
T Consensus 251 ~~a~~---~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~-~~~W~~~~~lp~~~------------~~ 314 (346)
T TIGR03547 251 AFAGI---SNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALD-NGKWSKVGKLPQGL------------AY 314 (346)
T ss_pred EeeeE---ECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEec-CCcccccCCCCCCc------------ee
Confidence 22443 799999999853110 01257788764 34599998887432 11
Q ss_pred EEEEeeCCEEEEEeec
Q 017381 313 VYCFWHQGMICVCCYT 328 (372)
Q Consensus 313 ~~~~~~~~~i~~~~~~ 328 (372)
..++..+|+||+.++.
T Consensus 315 ~~~~~~~~~iyv~GG~ 330 (346)
T TIGR03547 315 GVSVSWNNGVLLIGGE 330 (346)
T ss_pred eEEEEcCCEEEEEecc
Confidence 3345678899998854
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.5e-12 Score=122.19 Aligned_cols=234 Identities=15% Similarity=0.137 Sum_probs=146.0
Q ss_pred ccccccCC--CCCeeeec-CCCCCCCCCceEEEEecCcEEEEecCC-----------CceEEEEeccccceeccCCCCCC
Q 017381 77 QYPLYDST--HGTWRRLS-LPYSLLLPSAATLLSSSKGLLCFSLPS-----------SSSFLVCNLVTLSSRTIDFPTYP 142 (372)
Q Consensus 77 ~~~~~d~~--~~~w~~l~-~~~~~~~~~~~~~~~s~~Gll~~~~~~-----------~~~~~v~NP~t~~~~~lP~~~~~ 142 (372)
.+..||.. .+.|..++ +|. ..+....+++.+|-|++.++. .+.+++|||.+++|..++++ .+
T Consensus 51 ~~~~~d~~~~~~~W~~l~~~p~---~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~-~p 126 (376)
T PRK14131 51 SWYKLDLNAPSKGWTKIAAFPG---GPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTR-SP 126 (376)
T ss_pred eEEEEECCCCCCCeEECCcCCC---CCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCC-CC
Confidence 35567765 46898775 331 123344566778877776542 13688999999999999853 12
Q ss_pred CCceeEEEEeCCCCEEEEEEeecCC-------------------------------------CceEEEEECCCCCccccc
Q 017381 143 FDFELLTLVSTPSGYKIFMLFAKSF-------------------------------------PNYAFVYDSTDQSWSKFD 185 (372)
Q Consensus 143 ~~~~~~~~~~~~~~ykvv~~~~~~~-------------------------------------~~~~~vy~s~~~~W~~~~ 185 (372)
+...+.+.... .+-+|+++||... ...+++||+.+++|+...
T Consensus 127 ~~~~~~~~~~~-~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~ 205 (376)
T PRK14131 127 VGLAGHVAVSL-HNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAG 205 (376)
T ss_pred CcccceEEEEe-eCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECC
Confidence 22222221110 1128999988531 247999999999999987
Q ss_pred cCCCCccccccCCCcccEEECCEEEEeeeCC------c--EEEEEecCCCeeeccCCCCccccccCCCccc--------c
Q 017381 186 IDGFPSMILSQSSHQEGVFYKGSLYFTTPEP------F--SIVRFDLENGIWETPNDANDHMTMMLPHELT--------F 249 (372)
Q Consensus 186 ~~~~p~~~~~~~~~~~~v~~~G~~y~~~~~~------~--~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~--------~ 249 (372)
.+|. +.+..+..+.++++||++++.. . ....||+++++|..+. + +|..+. .
T Consensus 206 --~~p~---~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~-~-------~p~~~~~~~~~~~~~ 272 (376)
T PRK14131 206 --ESPF---LGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLP-D-------LPPAPGGSSQEGVAG 272 (376)
T ss_pred --cCCC---CCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecC-C-------CCCCCcCCcCCccce
Confidence 5653 1123455678899999998631 1 2345677889999864 4 443221 1
Q ss_pred cceeeeccCCCeEEEEEeeecCCc-----------------cceEEEEEEcCCCCEEEEEecChHHHHHhhhhccCCCce
Q 017381 250 FRLVNDGEESNKLYLIGGVGRNGI-----------------STTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDH 312 (372)
Q Consensus 250 ~~lv~e~~~~g~L~vv~~~~~~~~-----------------~~~i~vw~l~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~ 312 (372)
...+ . .+|+||++++...... ...+++|..+ .++|+++..||... ..
T Consensus 273 ~~a~-~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~-~~~W~~~~~lp~~r------------~~ 336 (376)
T PRK14131 273 AFAG-Y--SNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALV-NGKWQKVGELPQGL------------AY 336 (376)
T ss_pred Eece-e--ECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEec-CCcccccCcCCCCc------------cc
Confidence 1123 2 7999999998531100 0134566553 34599988887542 11
Q ss_pred EEEEeeCCEEEEEeecC------CeEEEEECCCCceEE
Q 017381 313 VYCFWHQGMICVCCYTW------PEILYYNVARRTWHW 344 (372)
Q Consensus 313 ~~~~~~~~~i~~~~~~~------~~v~~yd~~~~~w~~ 344 (372)
..++..++.||+.++.. ..|.+|+++++++..
T Consensus 337 ~~av~~~~~iyv~GG~~~~~~~~~~v~~~~~~~~~~~~ 374 (376)
T PRK14131 337 GVSVSWNNGVLLIGGETAGGKAVSDVTLLSWDGKKLTV 374 (376)
T ss_pred eEEEEeCCEEEEEcCCCCCCcEeeeEEEEEEcCCEEEE
Confidence 33566788899988632 258999999988764
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.2e-12 Score=124.42 Aligned_cols=204 Identities=13% Similarity=0.117 Sum_probs=133.6
Q ss_pred ccccccCCCCCeeeecCCCCCCCC-CceEEEEecCcEEEEecCC-----CceEEEEeccccceeccCCC---CCCCCcee
Q 017381 77 QYPLYDSTHGTWRRLSLPYSLLLP-SAATLLSSSKGLLCFSLPS-----SSSFLVCNLVTLSSRTIDFP---TYPFDFEL 147 (372)
Q Consensus 77 ~~~~~d~~~~~w~~l~~~~~~~~~-~~~~~~~s~~Gll~~~~~~-----~~~~~v~NP~t~~~~~lP~~---~~~~~~~~ 147 (372)
.+..||+..++|..++.....|.. ...+.+++.++.|++.++. .+.+++|||.+++|..++++ |.++..+.
T Consensus 194 ~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~ 273 (470)
T PLN02193 194 HLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHS 273 (470)
T ss_pred cEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceE
Confidence 467799999999976532122221 2233456677877666542 25789999999999999877 33443333
Q ss_pred EEEEeCCCCEEEEEEeecCC---CceEEEEECCCCCccccccCCCCccccccCCCcccEEECCEEEEeeeC----CcEEE
Q 017381 148 LTLVSTPSGYKIFMLFAKSF---PNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPE----PFSIV 220 (372)
Q Consensus 148 ~~~~~~~~~ykvv~~~~~~~---~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~~y~~~~~----~~~i~ 220 (372)
++... -+|+++++... ...+++||+.+++|+.+. . +......+..+..+.++|++|++++. ...+.
T Consensus 274 ~~~~~----~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~--~-~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~ 346 (470)
T PLN02193 274 MAADE----ENVYVFGGVSATARLKTLDSYNIVDKKWFHCS--T-PGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVH 346 (470)
T ss_pred EEEEC----CEEEEECCCCCCCCcceEEEEECCCCEEEeCC--C-CCCCCCCCCCcEEEEECCcEEEEECCCCCccCceE
Confidence 33222 28999988542 347899999999999876 2 11011123445677889999998763 24699
Q ss_pred EEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeEEEEEeeecCC-------ccceEEEEEEcCCCC-EEEEE
Q 017381 221 RFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNG-------ISTTMKLWELGCGGN-WIEVE 292 (372)
Q Consensus 221 ~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~~-------~~~~i~vw~l~~~~~-W~~v~ 292 (372)
+||+.+++|+.+...++ .|..+..+..++ .+++||++++..... ....-++|.+|..+. |+++.
T Consensus 347 ~yD~~t~~W~~~~~~g~-----~P~~R~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~ 418 (470)
T PLN02193 347 YYDPVQDKWTQVETFGV-----RPSERSVFASAA---VGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLD 418 (470)
T ss_pred EEECCCCEEEEeccCCC-----CCCCcceeEEEE---ECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcc
Confidence 99999999998742111 344444445553 799999999853210 011236899988776 99887
Q ss_pred ecC
Q 017381 293 RVP 295 (372)
Q Consensus 293 ~lp 295 (372)
.++
T Consensus 419 ~~~ 421 (470)
T PLN02193 419 KFG 421 (470)
T ss_pred cCC
Confidence 664
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.1e-12 Score=118.92 Aligned_cols=212 Identities=15% Similarity=0.145 Sum_probs=129.5
Q ss_pred CeeeecCCCCCCCCCceEEEEecCcEEEEecCC-----CceEEEEeccccce----eccCCCCCCCCceeEEEEeCCCCE
Q 017381 87 TWRRLSLPYSLLLPSAATLLSSSKGLLCFSLPS-----SSSFLVCNLVTLSS----RTIDFPTYPFDFELLTLVSTPSGY 157 (372)
Q Consensus 87 ~w~~l~~~~~~~~~~~~~~~~s~~Gll~~~~~~-----~~~~~v~NP~t~~~----~~lP~~~~~~~~~~~~~~~~~~~y 157 (372)
+|..++ ++|.++.....++.++-|++.++. .+.++.+|+.+++| ..+|++|.++.....+... -
T Consensus 52 ~W~~~~---~lp~~r~~~~~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~----~ 124 (323)
T TIGR03548 52 KWVKDG---QLPYEAAYGASVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKD----G 124 (323)
T ss_pred eEEEcc---cCCccccceEEEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEEC----C
Confidence 687764 222333333344556655554432 24788999999997 7788887766544443332 2
Q ss_pred EEEEEeecC---CCceEEEEECCCCCccccccCCCCccccccCCCcccEEECCEEEEeeeCC----cEEEEEecCCCeee
Q 017381 158 KIFMLFAKS---FPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEP----FSIVRFDLENGIWE 230 (372)
Q Consensus 158 kvv~~~~~~---~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~~y~~~~~~----~~i~~yD~~~~~w~ 230 (372)
+|+++++.. ....+++||+.+++|+.++ .+|.. .+..+..+.++|++|.+++.. ..+.+||+.+++|+
T Consensus 125 ~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~--~~p~~---~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 125 TLYVGGGNRNGKPSNKSYLFNLETQEWFELP--DFPGE---PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred EEEEEeCcCCCccCceEEEEcCCCCCeeECC--CCCCC---CCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeE
Confidence 899998853 2358999999999999987 56531 123445678999999998642 24689999999999
Q ss_pred ccCCCCccccccCCCccc-ccceeeeccCCCeEEEEEeeecCCc------------------------------cceEEE
Q 017381 231 TPNDANDHMTMMLPHELT-FFRLVNDGEESNKLYLIGGVGRNGI------------------------------STTMKL 279 (372)
Q Consensus 231 ~i~~p~~~~~~~~p~~~~-~~~lv~e~~~~g~L~vv~~~~~~~~------------------------------~~~i~v 279 (372)
.+.... . .-.|.... ...++. .+++||++++...... ...-.+
T Consensus 200 ~~~~~~-~--~~~p~~~~~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 273 (323)
T TIGR03548 200 KVADPT-T--DSEPISLLGAASIKI---NESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKI 273 (323)
T ss_pred ECCCCC-C--CCCceeccceeEEEE---CCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceE
Confidence 874210 0 00233222 223332 6899999998532100 001135
Q ss_pred EEEcCCCC-EEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEee
Q 017381 280 WELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCY 327 (372)
Q Consensus 280 w~l~~~~~-W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 327 (372)
+.+|...+ |+.+..+|... ......+..++.||+.++
T Consensus 274 ~~yd~~~~~W~~~~~~p~~~-----------r~~~~~~~~~~~iyv~GG 311 (323)
T TIGR03548 274 LIYNVRTGKWKSIGNSPFFA-----------RCGAALLLTGNNIFSING 311 (323)
T ss_pred EEEECCCCeeeEcccccccc-----------cCchheEEECCEEEEEec
Confidence 55666655 99988775321 112334566788998875
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.9e-10 Score=96.33 Aligned_cols=229 Identities=12% Similarity=0.149 Sum_probs=141.1
Q ss_pred cccccCCCCCeeeecCC---------CC-CCCCCceEEEEecCcEEEEecC-C-----CceEEEEeccccceeccCCCC-
Q 017381 78 YPLYDSTHGTWRRLSLP---------YS-LLLPSAATLLSSSKGLLCFSLP-S-----SSSFLVCNLVTLSSRTIDFPT- 140 (372)
Q Consensus 78 ~~~~d~~~~~w~~l~~~---------~~-~~~~~~~~~~~s~~Gll~~~~~-~-----~~~~~v~NP~t~~~~~lP~~~- 140 (372)
+.+++...-+|.+++.. .+ .|..+..+.+..-.+-+++=++ . -+.++.|||.|.+|.+.---.
T Consensus 46 VH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~ 125 (392)
T KOG4693|consen 46 VHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGF 125 (392)
T ss_pred eEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEcCccCcccccceeeeeccccccccccceeee
Confidence 34455555678776531 11 1222333444455554444332 1 246888999999998753211
Q ss_pred CCCCceeEEEEeCCCCEEEEEEeecC-----CCceEEEEECCCCCccccccCCCCccccccCCCcccEEECCEEEEeeeC
Q 017381 141 YPFDFELLTLVSTPSGYKIFMLFAKS-----FPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPE 215 (372)
Q Consensus 141 ~~~~~~~~~~~~~~~~ykvv~~~~~~-----~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~~y~~~~~ 215 (372)
.+-.+.+...+.-++ ..+++|+.. .+..++++|..+-+|+.+...+.|+ .+ +..+.++.++|.+|..+++
T Consensus 126 vPgaRDGHsAcV~gn--~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~Pp-rw--RDFH~a~~~~~~MYiFGGR 200 (392)
T KOG4693|consen 126 VPGARDGHSACVWGN--QMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPP-RW--RDFHTASVIDGMMYIFGGR 200 (392)
T ss_pred cCCccCCceeeEECc--EEEEecChHHHHHhhhccceeEeccceeeeehhccCCCc-hh--hhhhhhhhccceEEEeccc
Confidence 111111111111111 455666643 2458999999999999997556665 22 3567888999999999863
Q ss_pred C--------------cEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeEEEEEeeecCCccceEEEEE
Q 017381 216 P--------------FSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWE 281 (372)
Q Consensus 216 ~--------------~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~~~~~~i~vw~ 281 (372)
. ..|+++|++|+.|.... + +.+.|.++..+...+ ++|++|++++....-....-++|.
T Consensus 201 ~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p-~----~~~~P~GRRSHS~fv---Yng~~Y~FGGYng~ln~HfndLy~ 272 (392)
T KOG4693|consen 201 SDESGPFHSIHEQYCDTIMALDLATGAWTRTP-E----NTMKPGGRRSHSTFV---YNGKMYMFGGYNGTLNVHFNDLYC 272 (392)
T ss_pred cccCCCccchhhhhcceeEEEeccccccccCC-C----CCcCCCcccccceEE---EcceEEEecccchhhhhhhcceee
Confidence 1 46999999999998742 1 122688877777775 899999999864322234568999
Q ss_pred EcCCCC-EEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeec
Q 017381 282 LGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYT 328 (372)
Q Consensus 282 l~~~~~-W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 328 (372)
+|+.+. |.+|..-....+ ++...-++..++++|+.++.
T Consensus 273 FdP~t~~W~~I~~~Gk~P~---------aRRRqC~~v~g~kv~LFGGT 311 (392)
T KOG4693|consen 273 FDPKTSMWSVISVRGKYPS---------ARRRQCSVVSGGKVYLFGGT 311 (392)
T ss_pred cccccchheeeeccCCCCC---------cccceeEEEECCEEEEecCC
Confidence 998877 999864332211 11122244567888888753
|
|
| >KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=5e-09 Score=88.93 Aligned_cols=210 Identities=13% Similarity=0.196 Sum_probs=133.3
Q ss_pred ceEEEEeccccceeccCCCC------C-----CCCceeEEEEeCCCCEEEEEEeecCCC----ceEEEEECCCCCccccc
Q 017381 121 SSFLVCNLVTLSSRTIDFPT------Y-----PFDFELLTLVSTPSGYKIFMLFAKSFP----NYAFVYDSTDQSWSKFD 185 (372)
Q Consensus 121 ~~~~v~NP~t~~~~~lP~~~------~-----~~~~~~~~~~~~~~~ykvv~~~~~~~~----~~~~vy~s~~~~W~~~~ 185 (372)
-.+.++|..+-+|.++||-- . ++.+.+...+. -.-|+++.|+.+.+ +..+.||++++.|+...
T Consensus 44 iDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~--y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~ 121 (392)
T KOG4693|consen 44 IDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVE--YQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPE 121 (392)
T ss_pred ceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEE--EcceEEEEcCccCcccccceeeeeccccccccccc
Confidence 47899999999999999831 1 12233333221 12278888876542 37789999999999876
Q ss_pred cCC-CCccccccCCCcccEEECCEEEEeeeC-------CcEEEEEecCCCeeeccCCCCccccccCCCcccccceeeecc
Q 017381 186 IDG-FPSMILSQSSHQEGVFYKGSLYFTTPE-------PFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGE 257 (372)
Q Consensus 186 ~~~-~p~~~~~~~~~~~~v~~~G~~y~~~~~-------~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~ 257 (372)
++. +|. .+..+++++.++.+|..++- ...+-++|+.|.+|+.+..-++ -|+.+..+..++
T Consensus 122 v~G~vPg----aRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~-----PprwRDFH~a~~--- 189 (392)
T KOG4693|consen 122 VEGFVPG----ARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGD-----PPRWRDFHTASV--- 189 (392)
T ss_pred eeeecCC----ccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCC-----Cchhhhhhhhhh---
Confidence 422 222 34567888899999998762 1347899999999999864431 244455555443
Q ss_pred CCCeEEEEEeeecCCc-------cceEEEEEEcCCCC-EEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeecC
Q 017381 258 ESNKLYLIGGVGRNGI-------STTMKLWELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTW 329 (372)
Q Consensus 258 ~~g~L~vv~~~~~~~~-------~~~i~vw~l~~~~~-W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 329 (372)
.+|..|++++..+... ...-.|-.+|..+. |++-..-+... ..+..-..++-++++|+.+++.
T Consensus 190 ~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P---------~GRRSHS~fvYng~~Y~FGGYn 260 (392)
T KOG4693|consen 190 IDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKP---------GGRRSHSTFVYNGKMYMFGGYN 260 (392)
T ss_pred ccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCC---------CcccccceEEEcceEEEecccc
Confidence 7999999999754211 11223444444444 98653221100 1122233445577788887532
Q ss_pred -------CeEEEEECCCCceEECC---CCCCCCC
Q 017381 330 -------PEILYYNVARRTWHWLP---SCPSLPH 353 (372)
Q Consensus 330 -------~~v~~yd~~~~~w~~v~---~~~~~~~ 353 (372)
+.+.+||+++..|.++. +.|.++.
T Consensus 261 g~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRR 294 (392)
T KOG4693|consen 261 GTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARR 294 (392)
T ss_pred hhhhhhhcceeecccccchheeeeccCCCCCccc
Confidence 35899999999999974 5555554
|
|
| >PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.8e-08 Score=79.64 Aligned_cols=87 Identities=21% Similarity=0.299 Sum_probs=62.6
Q ss_pred cEEECCEEEEeeeC----CcEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeEEEEEeeecCCccceE
Q 017381 202 GVFYKGSLYFTTPE----PFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTM 277 (372)
Q Consensus 202 ~v~~~G~~y~~~~~----~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~~~~~~i 277 (372)
|+++||.+||++.. ...|++||+++|+|+.+..|.+ .........|+ + ++|+|+++..... .....+
T Consensus 1 gicinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~-----~~~~~~~~~L~-~--~~G~L~~v~~~~~-~~~~~~ 71 (129)
T PF08268_consen 1 GICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPED-----PYSSDCSSTLI-E--YKGKLALVSYNDQ-GEPDSI 71 (129)
T ss_pred CEEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeee-----eccccCccEEE-E--eCCeEEEEEecCC-CCcceE
Confidence 57899999999864 5689999999999999874300 01222346788 5 9999999876431 113579
Q ss_pred EEEEEcCCCC--EEEEEe-cChH
Q 017381 278 KLWELGCGGN--WIEVER-VPEM 297 (372)
Q Consensus 278 ~vw~l~~~~~--W~~v~~-lp~~ 297 (372)
++|.|++.++ |++... +|..
T Consensus 72 ~iWvLeD~~k~~Wsk~~~~lp~~ 94 (129)
T PF08268_consen 72 DIWVLEDYEKQEWSKKHIVLPPS 94 (129)
T ss_pred EEEEeeccccceEEEEEEECChH
Confidence 9999986654 999866 4443
|
Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain. |
| >KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=9.2e-08 Score=86.10 Aligned_cols=202 Identities=11% Similarity=0.172 Sum_probs=129.8
Q ss_pred ceEEEEeccccceeccCC--CCCCCCceeEEEEeCCCCEEEEEEeecCC---------CceEEEEECCCCCccccccCCC
Q 017381 121 SSFLVCNLVTLSSRTIDF--PTYPFDFELLTLVSTPSGYKIFMLFAKSF---------PNYAFVYDSTDQSWSKFDIDGF 189 (372)
Q Consensus 121 ~~~~v~NP~t~~~~~lP~--~~~~~~~~~~~~~~~~~~ykvv~~~~~~~---------~~~~~vy~s~~~~W~~~~~~~~ 189 (372)
+.++.||-.+.+|+.+-. .|.+++.+.+...+. + .+..+||.-. -..+++|+..+++|..+...+-
T Consensus 98 ndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s-~--~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~ 174 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPS-N--ILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGG 174 (521)
T ss_pred eeeeEEeccccceeEeccCCCcCCCccceeEEecc-C--eEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCC
Confidence 478999999999998844 344454443333332 2 4556665321 1288999999999999863222
Q ss_pred CccccccCCCcccEEECCEEEEeee--C--C-----cEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCC
Q 017381 190 PSMILSQSSHQEGVFYKGSLYFTTP--E--P-----FSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESN 260 (372)
Q Consensus 190 p~~~~~~~~~~~~v~~~G~~y~~~~--~--~-----~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g 260 (372)
| . .+..+..|+....+...++ + + .-+.+||+.+-+|+.+.+++. -|..+..+++.+. -+|
T Consensus 175 P---S-~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga-----~PtpRSGcq~~vt--pqg 243 (521)
T KOG1230|consen 175 P---S-PRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGA-----GPTPRSGCQFSVT--PQG 243 (521)
T ss_pred C---C-CCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCC-----CCCCCCcceEEec--CCC
Confidence 2 2 2346778888887777764 1 1 348999999999999875531 3666666676652 499
Q ss_pred eEEEEEeeec-------CCccceEEEEEEcCCC----C--EEEEEecChHHHHHhhhhccCCCceEE-EEeeCCEEEEEe
Q 017381 261 KLYLIGGVGR-------NGISTTMKLWELGCGG----N--WIEVERVPEMMCRKFMSVCYHNYDHVY-CFWHQGMICVCC 326 (372)
Q Consensus 261 ~L~vv~~~~~-------~~~~~~i~vw~l~~~~----~--W~~v~~lp~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~ 326 (372)
.++|-++... ..+..+-+.|.|+++. . |+++......+. .+..+. +++.+++-++.+
T Consensus 244 ~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPs---------pRsgfsv~va~n~kal~FG 314 (521)
T KOG1230|consen 244 GIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPS---------PRSGFSVAVAKNHKALFFG 314 (521)
T ss_pred cEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCC---------CCCceeEEEecCCceEEec
Confidence 9999998642 1234467899998764 2 888865532221 122233 345555555554
Q ss_pred ecC--------------CeEEEEECCCCceEEC
Q 017381 327 YTW--------------PEILYYNVARRTWHWL 345 (372)
Q Consensus 327 ~~~--------------~~v~~yd~~~~~w~~v 345 (372)
+.. +.++.||+..++|.+.
T Consensus 315 GV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~ 347 (521)
T KOG1230|consen 315 GVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEG 347 (521)
T ss_pred ceecccccchhhhhhhhhhhhheecccchhhHh
Confidence 321 2479999999999774
|
|
| >PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.4e-09 Score=69.36 Aligned_cols=39 Identities=31% Similarity=0.638 Sum_probs=34.7
Q ss_pred hcCCCHHHHHHHHccCCchhhhHHhhchhhhhhcccChh
Q 017381 13 WSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPS 51 (372)
Q Consensus 13 ~~~LP~dll~~IL~rLp~~~l~r~r~Vck~W~~~i~~~~ 51 (372)
|..||+|++.+||+.||..++.+++.|||+|+.++.++.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~ 39 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNS 39 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCC
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChh
Confidence 578999999999999999999999999999999998763
|
|
| >KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2e-07 Score=90.05 Aligned_cols=205 Identities=18% Similarity=0.150 Sum_probs=132.0
Q ss_pred cccccCCCCCeeeecCCCCCCCCCceEEEEecCcEEEEecCCC------ceEEEEeccccceeccCCCCC-CCCceeEEE
Q 017381 78 YPLYDSTHGTWRRLSLPYSLLLPSAATLLSSSKGLLCFSLPSS------SSFLVCNLVTLSSRTIDFPTY-PFDFELLTL 150 (372)
Q Consensus 78 ~~~~d~~~~~w~~l~~~~~~~~~~~~~~~~s~~Gll~~~~~~~------~~~~v~NP~t~~~~~lP~~~~-~~~~~~~~~ 150 (372)
++++|.....|.....-...|.....+.+++.+..|++.++.. +.+..+|+.|++|..+.+... +..+.+++.
T Consensus 90 l~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~ 169 (482)
T KOG0379|consen 90 LYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSA 169 (482)
T ss_pred eEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccceE
Confidence 5667877777765532222233344445555555555444422 389999999999999977543 333333333
Q ss_pred EeCCCCEEEEEEeecCC----CceEEEEECCCCCccccccCCCCccccccCCCcccEEECCEEEEeeeCC------cEEE
Q 017381 151 VSTPSGYKIFMLFAKSF----PNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEP------FSIV 220 (372)
Q Consensus 151 ~~~~~~ykvv~~~~~~~----~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~~y~~~~~~------~~i~ 220 (372)
...+. +++++||... ...+++||.++.+|..+....-.+ . .+..+..+.++++++.+++.. ..+.
T Consensus 170 ~~~g~--~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P--~-pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~ 244 (482)
T KOG0379|consen 170 TVVGT--KLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAP--S-PRYGHAMVVVGNKLLVFGGGDDGDVYLNDVH 244 (482)
T ss_pred EEECC--EEEEECCccCcccceeeeeeeccccccceecccCCCCC--C-CCCCceEEEECCeEEEEeccccCCceecceE
Confidence 22222 8888888642 359999999999999886311111 1 245677888899998887532 3489
Q ss_pred EEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeEEEEEeeecCCccceEEEEEEcCCCC-EEEEEecC
Q 017381 221 RFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGN-WIEVERVP 295 (372)
Q Consensus 221 ~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~~~~~-W~~v~~lp 295 (372)
.+|+.+.+|..+...++ .|..+..+.++. .+..++++++.........-++|.|+.... |.++....
T Consensus 245 ~ldl~~~~W~~~~~~g~-----~p~~R~~h~~~~---~~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~~~~~ 312 (482)
T KOG0379|consen 245 ILDLSTWEWKLLPTGGD-----LPSPRSGHSLTV---SGDHLLLFGGGTDPKQEPLGDLYGLDLETLVWSKVESVG 312 (482)
T ss_pred eeecccceeeeccccCC-----CCCCcceeeeEE---ECCEEEEEcCCcccccccccccccccccccceeeeeccc
Confidence 99999999985431122 566666666663 788899998854321113457888876655 99998776
|
|
| >KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.3e-06 Score=84.59 Aligned_cols=204 Identities=13% Similarity=0.097 Sum_probs=133.1
Q ss_pred eEEEEeccccceeccCCCC-CCCCceeEEEEeCCCCEEEEEEeecCC----CceEEEEECCCCCcccccc-CCCCccccc
Q 017381 122 SFLVCNLVTLSSRTIDFPT-YPFDFELLTLVSTPSGYKIFMLFAKSF----PNYAFVYDSTDQSWSKFDI-DGFPSMILS 195 (372)
Q Consensus 122 ~~~v~NP~t~~~~~lP~~~-~~~~~~~~~~~~~~~~ykvv~~~~~~~----~~~~~vy~s~~~~W~~~~~-~~~p~~~~~ 195 (372)
.++++|-.+..|...+.-. .+..+.++.++... -+++.+|+... ...++.||..+++|+.... .+.|+
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~--~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~---- 162 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVG--DKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPP---- 162 (482)
T ss_pred eeEEeecCCcccccccccCCCCCcccceeEEEEC--CeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCC----
Confidence 4999999999998876542 22233333332222 27888887542 2389999999999998863 12122
Q ss_pred cCCCcccEEECCEEEEeeeC------CcEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeEEEEEeee
Q 017381 196 QSSHQEGVFYKGSLYFTTPE------PFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVG 269 (372)
Q Consensus 196 ~~~~~~~v~~~G~~y~~~~~------~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~ 269 (372)
.+..+.++.++.++|+.++. ...+.+||+++.+|..+...+. .|..+..+.+++ .+++++++++..
T Consensus 163 ~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~-----~P~pR~gH~~~~---~~~~~~v~gG~~ 234 (482)
T KOG0379|consen 163 PRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGE-----APSPRYGHAMVV---VGNKLLVFGGGD 234 (482)
T ss_pred CcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCC-----CCCCCCCceEEE---ECCeEEEEeccc
Confidence 34567788888899998763 1358999999999998765542 466566666764 799999998854
Q ss_pred cCCccceEEEEEEcCCCC-EEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeec-------CCeEEEEECCCCc
Q 017381 270 RNGISTTMKLWELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYT-------WPEILYYNVARRT 341 (372)
Q Consensus 270 ~~~~~~~i~vw~l~~~~~-W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-------~~~v~~yd~~~~~ 341 (372)
......-++|.||-.+. |.++...+... ........+..++.+++.+.. ...+..||++++.
T Consensus 235 -~~~~~l~D~~~ldl~~~~W~~~~~~g~~p---------~~R~~h~~~~~~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~ 304 (482)
T KOG0379|consen 235 -DGDVYLNDVHILDLSTWEWKLLPTGGDLP---------SPRSGHSLTVSGDHLLLFGGGTDPKQEPLGDLYGLDLETLV 304 (482)
T ss_pred -cCCceecceEeeecccceeeeccccCCCC---------CCcceeeeEEECCEEEEEcCCcccccccccccccccccccc
Confidence 12234457888876665 98654432111 011112222445556665532 2347999999999
Q ss_pred eEECCCCC
Q 017381 342 WHWLPSCP 349 (372)
Q Consensus 342 w~~v~~~~ 349 (372)
|.++....
T Consensus 305 w~~~~~~~ 312 (482)
T KOG0379|consen 305 WSKVESVG 312 (482)
T ss_pred eeeeeccc
Confidence 99987665
|
|
| >PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.2e-07 Score=76.58 Aligned_cols=128 Identities=16% Similarity=0.248 Sum_probs=78.1
Q ss_pred cEEECCEEEEeeeCC-----cEEEEEecCCCee-eccCCCCccccccCCCccc----ccceeeeccCCCeEEEEEeeecC
Q 017381 202 GVFYKGSLYFTTPEP-----FSIVRFDLENGIW-ETPNDANDHMTMMLPHELT----FFRLVNDGEESNKLYLIGGVGRN 271 (372)
Q Consensus 202 ~v~~~G~~y~~~~~~-----~~i~~yD~~~~~w-~~i~~p~~~~~~~~p~~~~----~~~lv~e~~~~g~L~vv~~~~~~ 271 (372)
+|++||.+||++... ..|++||+.+|++ ..+. +|.... ...|.+. .+++|+++...
T Consensus 1 gV~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~---------lP~~~~~~~~~~~L~~v--~~~~L~~~~~~--- 66 (164)
T PF07734_consen 1 GVFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLP---------LPFCNDDDDDSVSLSVV--RGDCLCVLYQC--- 66 (164)
T ss_pred CEEECCEEEeeEEecCCCCceEEEEEeccccccCCEEC---------CCCccCccCCEEEEEEe--cCCEEEEEEec---
Confidence 589999999998632 1699999999999 6655 444322 2344211 57899998652
Q ss_pred CccceEEEEEEcCCC----CEEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeec-C-----CeEEEEECCCCc
Q 017381 272 GISTTMKLWELGCGG----NWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYT-W-----PEILYYNVARRT 341 (372)
Q Consensus 272 ~~~~~i~vw~l~~~~----~W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~-----~~v~~yd~~~~~ 341 (372)
.....++||.+++.+ +|++..+++.......... + ......+..++++.+.... . ..+.+|+ +++.
T Consensus 67 ~~~~~~~IWvm~~~~~~~~SWtK~~~i~~~~~~~~~~~-~--~~~~~~i~~~~~vlv~~~~~~~~~~~~~i~i~g-~~~~ 142 (164)
T PF07734_consen 67 DETSKIEIWVMKKYGYGKESWTKLFTIDLPPLPSLFFH-F--RNPSFFIDEEKKVLVCCDKETQREEKNKIYIVG-EDGK 142 (164)
T ss_pred cCCccEEEEEEeeeccCcceEEEEEEEecCCCCCcccc-c--ccceEEEeCCCeEEEEEcCCCCccceeEEEEEc-CCCE
Confidence 223469999998532 3999988864432211100 0 0111223444555554322 1 3478888 7777
Q ss_pred eEECCC
Q 017381 342 WHWLPS 347 (372)
Q Consensus 342 w~~v~~ 347 (372)
.+++.-
T Consensus 143 ~~~~~~ 148 (164)
T PF07734_consen 143 FIEVDI 148 (164)
T ss_pred EEEccc
Confidence 877763
|
Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain. |
| >PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.4e-09 Score=68.07 Aligned_cols=44 Identities=41% Similarity=0.660 Sum_probs=37.2
Q ss_pred hhcCCCHHHHHHHHccCCchhhhHHhhchhhhhhcccChhhhcc
Q 017381 12 IWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSFLSK 55 (372)
Q Consensus 12 ~~~~LP~dll~~IL~rLp~~~l~r~r~Vck~W~~~i~~~~F~~~ 55 (372)
.|..||+|++.+||.+|+..++.+++.|||+|++++.++.+...
T Consensus 2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~ 45 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKK 45 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHH
T ss_pred CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHH
Confidence 47889999999999999999999999999999999998876543
|
This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B. |
| >KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=9.6e-07 Score=79.69 Aligned_cols=165 Identities=18% Similarity=0.233 Sum_probs=105.1
Q ss_pred ceEEEEECCCCCccccccCCCCccccccCCCcccEEEC-CEEEEeeeCC-----------cEEEEEecCCCeeeccCCCC
Q 017381 169 NYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYK-GSLYFTTPEP-----------FSIVRFDLENGIWETPNDAN 236 (372)
Q Consensus 169 ~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~-G~~y~~~~~~-----------~~i~~yD~~~~~w~~i~~p~ 236 (372)
..++.|+.++++|+.+.+-+.| .+ +..+.+|++- |.+|..+++- .-+..||..+++|+.+..+|
T Consensus 98 ndLy~Yn~k~~eWkk~~spn~P---~p-Rsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g 173 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVVSPNAP---PP-RSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGG 173 (521)
T ss_pred eeeeEEeccccceeEeccCCCc---CC-CccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCC
Confidence 3788999999999988742222 22 3456666664 7777776531 24899999999999987665
Q ss_pred ccccccCCCcccccceeeeccCCCeEEEEEeeecCC--ccceEEEEEEcCCC-CEEEEEecChHHHHHhhhhccCCCceE
Q 017381 237 DHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNG--ISTTMKLWELGCGG-NWIEVERVPEMMCRKFMSVCYHNYDHV 313 (372)
Q Consensus 237 ~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~~--~~~~i~vw~l~~~~-~W~~v~~lp~~~~~~~~~~~~~~~~~~ 313 (372)
-|..+..++||+ +..+|.++++..+.. ....-+||.++-++ +|+++.. +.. ...- +....
T Consensus 174 ------~PS~RSGHRMva---wK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klep-sga-~Ptp------RSGcq 236 (521)
T KOG1230|consen 174 ------GPSPRSGHRMVA---WKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEP-SGA-GPTP------RSGCQ 236 (521)
T ss_pred ------CCCCCccceeEE---eeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccC-CCC-CCCC------CCcce
Confidence 688888899996 999999999976532 22345778777655 4999865 221 0000 11223
Q ss_pred EEEeeCCEEEEEeecCC--------------eEEEEECCCC-----ceEECCCCCCCCCC
Q 017381 314 YCFWHQGMICVCCYTWP--------------EILYYNVARR-----TWHWLPSCPSLPHK 354 (372)
Q Consensus 314 ~~~~~~~~i~~~~~~~~--------------~v~~yd~~~~-----~w~~v~~~~~~~~~ 354 (372)
..+.-+|.|++.++++. ..+..+++++ +|.++...-+.|+.
T Consensus 237 ~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPsp 296 (521)
T KOG1230|consen 237 FSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSP 296 (521)
T ss_pred EEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCC
Confidence 33343555777764321 2577777773 56666544444433
|
|
| >smart00256 FBOX A Receptor for Ubiquitination Targets | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.9e-08 Score=62.12 Aligned_cols=38 Identities=45% Similarity=0.802 Sum_probs=35.6
Q ss_pred CCHHHHHHHHccCCchhhhHHhhchhhhhhcccChhhh
Q 017381 16 LPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSFL 53 (372)
Q Consensus 16 LP~dll~~IL~rLp~~~l~r~r~Vck~W~~~i~~~~F~ 53 (372)
||+|++.+|+.+|+..++.++++|||+|+.++.++.|.
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~ 38 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFW 38 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhh
Confidence 79999999999999999999999999999999887664
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=98.26 E-value=5.9e-05 Score=66.77 Aligned_cols=41 Identities=22% Similarity=0.452 Sum_probs=37.3
Q ss_pred hhcCCC----HHHHHHHHccCCchhhhHHhhchhhhhhcccChhh
Q 017381 12 IWSRLP----EDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSF 52 (372)
Q Consensus 12 ~~~~LP----~dll~~IL~rLp~~~l~r~r~Vck~W~~~i~~~~F 52 (372)
-+..|| +++.+.||+.|...+|+.+..|||+|+++++++..
T Consensus 74 Fi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~ 118 (499)
T KOG0281|consen 74 FITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGML 118 (499)
T ss_pred HHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchH
Confidence 356799 99999999999999999999999999999998744
|
|
| >KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0017 Score=60.74 Aligned_cols=206 Identities=15% Similarity=0.134 Sum_probs=109.2
Q ss_pred ceEEEEeccccceeccCCCC-CCCCceeEEEEeCCCCEEEEEEeecC--CCceEEEEECCCC--CccccccCCCCc-ccc
Q 017381 121 SSFLVCNLVTLSSRTIDFPT-YPFDFELLTLVSTPSGYKIFMLFAKS--FPNYAFVYDSTDQ--SWSKFDIDGFPS-MIL 194 (372)
Q Consensus 121 ~~~~v~NP~t~~~~~lP~~~-~~~~~~~~~~~~~~~~ykvv~~~~~~--~~~~~~vy~s~~~--~W~~~~~~~~p~-~~~ 194 (372)
+++.|||-.|+||-.-.... .+....++|++..+. ||+++|++- ....=+.|..... .|+.+.. ..|. +..
T Consensus 57 DELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGt--rilvFGGMvEYGkYsNdLYELQasRWeWkrlkp-~~p~nG~p 133 (830)
T KOG4152|consen 57 DELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGT--RILVFGGMVEYGKYSNDLYELQASRWEWKRLKP-KTPKNGPP 133 (830)
T ss_pred hhhhhhccccceeecchhcCCCCCchhhcceEecCc--eEEEEccEeeeccccchHHHhhhhhhhHhhcCC-CCCCCCCC
Confidence 37899999999997543222 233445667765544 899999853 2223345655544 4676652 1121 111
Q ss_pred c-cCCCcccEEECCEEEEeeeC------C--------cEEEEEecC--CC--eeeccCCCCccccccCCCcccccceeee
Q 017381 195 S-QSSHQEGVFYKGSLYFTTPE------P--------FSIVRFDLE--NG--IWETPNDANDHMTMMLPHELTFFRLVND 255 (372)
Q Consensus 195 ~-~~~~~~~v~~~G~~y~~~~~------~--------~~i~~yD~~--~~--~w~~i~~p~~~~~~~~p~~~~~~~lv~e 255 (372)
+ .+..+....++.+.|.+++- . ..+...++. .. .|.....-| .+|..++.+..|..
T Consensus 134 PCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~G-----v~P~pRESHTAViY 208 (830)
T KOG4152|consen 134 PCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYG-----VLPPPRESHTAVIY 208 (830)
T ss_pred CCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccC-----CCCCCcccceeEEE
Confidence 1 23456677888999998751 0 112333332 22 455421111 04555554433321
Q ss_pred ccCCC---eEEEEEeeecCCccceEEEEEEcCCCC-EEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEee----
Q 017381 256 GEESN---KLYLIGGVGRNGISTTMKLWELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCY---- 327 (372)
Q Consensus 256 ~~~~g---~L~vv~~~~~~~~~~~i~vw~l~~~~~-W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---- 327 (372)
.+.|. ++++.++.. ...-=++|.||-++. |.+...-..... .+........||+.|+.++
T Consensus 209 ~eKDs~~skmvvyGGM~---G~RLgDLW~Ldl~Tl~W~kp~~~G~~Pl---------PRSLHsa~~IGnKMyvfGGWVPl 276 (830)
T KOG4152|consen 209 TEKDSKKSKMVVYGGMS---GCRLGDLWTLDLDTLTWNKPSLSGVAPL---------PRSLHSATTIGNKMYVFGGWVPL 276 (830)
T ss_pred EeccCCcceEEEEcccc---cccccceeEEecceeecccccccCCCCC---------CcccccceeecceeEEecceeee
Confidence 01343 477777643 233448999988776 998642110000 0011122234565666542
Q ss_pred ---------------cCCeEEEEECCCCceEECC
Q 017381 328 ---------------TWPEILYYNVARRTWHWLP 346 (372)
Q Consensus 328 ---------------~~~~v~~yd~~~~~w~~v~ 346 (372)
-...+.++|+.+..|+.+-
T Consensus 277 ~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~ 310 (830)
T KOG4152|consen 277 VMDDVKVATHEKEWKCTSSLACLNLDTMAWETLL 310 (830)
T ss_pred eccccccccccceeeeccceeeeeecchheeeee
Confidence 0134789999999998753
|
|
| >COG3055 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0029 Score=56.84 Aligned_cols=157 Identities=19% Similarity=0.255 Sum_probs=94.8
Q ss_pred ceEEEEecc--ccceeccCCCCCC-CCceeEEEEeCCCCEEEEEEeecCC--------CceEEEEECCCCCccccccCCC
Q 017381 121 SSFLVCNLV--TLSSRTIDFPTYP-FDFELLTLVSTPSGYKIFMLFAKSF--------PNYAFVYDSTDQSWSKFDIDGF 189 (372)
Q Consensus 121 ~~~~v~NP~--t~~~~~lP~~~~~-~~~~~~~~~~~~~~ykvv~~~~~~~--------~~~~~vy~s~~~~W~~~~~~~~ 189 (372)
..+++.|.. .+.|..+...|-. +.....++... +++++++... -..++.||+.+++|..+.. ..
T Consensus 58 ~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~----kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t-~s 132 (381)
T COG3055 58 TAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGG----KLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDT-RS 132 (381)
T ss_pred ccceehhhhcCCCCceEcccCCCcccccchheeeCC----eEEEeeccccCCCCCceEeeeeEEecCCCChhheecc-cc
Confidence 455665553 3569998876543 33322222222 7777776431 1378999999999998873 33
Q ss_pred CccccccCCCcccEEECC-EEEEeeeC---------------------------------------CcEEEEEecCCCee
Q 017381 190 PSMILSQSSHQEGVFYKG-SLYFTTPE---------------------------------------PFSIVRFDLENGIW 229 (372)
Q Consensus 190 p~~~~~~~~~~~~v~~~G-~~y~~~~~---------------------------------------~~~i~~yD~~~~~w 229 (372)
|.+ .....++.+++ .+|+.++- ...+++||+.+++|
T Consensus 133 P~g----l~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W 208 (381)
T COG3055 133 PTG----LVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQW 208 (381)
T ss_pred ccc----cccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchh
Confidence 432 23445666676 88888641 02489999999999
Q ss_pred eccCCCCccccccCCCcccc-cceeeeccCCCeEEEEEeeecCCccceEEEEEEcC--CCC-EEEEEecChHH
Q 017381 230 ETPNDANDHMTMMLPHELTF-FRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGC--GGN-WIEVERVPEMM 298 (372)
Q Consensus 230 ~~i~~p~~~~~~~~p~~~~~-~~lv~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~~--~~~-W~~v~~lp~~~ 298 (372)
+..- . .|-...+ ..++. -+++|.+|.+.... ..++-++++.+- +.. |.+...+|...
T Consensus 209 ~~~G-~-------~pf~~~aGsa~~~---~~n~~~lInGEiKp-GLRt~~~k~~~~~~~~~~w~~l~~lp~~~ 269 (381)
T COG3055 209 RNLG-E-------NPFYGNAGSAVVI---KGNKLTLINGEIKP-GLRTAEVKQADFGGDNLKWLKLSDLPAPI 269 (381)
T ss_pred hhcC-c-------CcccCccCcceee---cCCeEEEEcceecC-CccccceeEEEeccCceeeeeccCCCCCC
Confidence 9863 1 2322222 23442 57889999874432 234445555443 333 99998887654
|
|
| >PF13964 Kelch_6: Kelch motif | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00041 Score=44.55 Aligned_cols=39 Identities=23% Similarity=0.269 Sum_probs=31.2
Q ss_pred EEEeeCCEEEEEeecC------CeEEEEECCCCceEECCCCCCCC
Q 017381 314 YCFWHQGMICVCCYTW------PEILYYNVARRTWHWLPSCPSLP 352 (372)
Q Consensus 314 ~~~~~~~~i~~~~~~~------~~v~~yd~~~~~w~~v~~~~~~~ 352 (372)
.++..++.||+.++.. +.+.+||+++++|+.++++|.++
T Consensus 6 s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 6 SAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred EEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCCC
Confidence 4556788899987542 45899999999999999888653
|
|
| >COG3055 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0064 Score=54.68 Aligned_cols=160 Identities=18% Similarity=0.260 Sum_probs=97.6
Q ss_pred eEEEEECCC--CCccccccCCCCccccccCCCcccEEECCEEEEeeeCC----------cEEEEEecCCCeeeccCCCCc
Q 017381 170 YAFVYDSTD--QSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEP----------FSIVRFDLENGIWETPNDAND 237 (372)
Q Consensus 170 ~~~vy~s~~--~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~~y~~~~~~----------~~i~~yD~~~~~w~~i~~p~~ 237 (372)
..+.-|.+. ..|+..+ ..|-. .+.....++++|++|+.++-+ ..+..||+.+++|..+...
T Consensus 59 afy~ldL~~~~k~W~~~a--~FpG~---~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~-- 131 (381)
T COG3055 59 AFYVLDLKKPGKGWTKIA--DFPGG---ARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTR-- 131 (381)
T ss_pred cceehhhhcCCCCceEcc--cCCCc---ccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheeccc--
Confidence 445556654 5699998 66642 122345789999999987521 3478899999999987644
Q ss_pred cccccCCCcccccceeeeccCCC-eEEEEEeeecCC--------------------------------ccceEEEEEEcC
Q 017381 238 HMTMMLPHELTFFRLVNDGEESN-KLYLIGGVGRNG--------------------------------ISTTMKLWELGC 284 (372)
Q Consensus 238 ~~~~~~p~~~~~~~lv~e~~~~g-~L~vv~~~~~~~--------------------------------~~~~i~vw~l~~ 284 (372)
.|.+......+. .++ ++++.+++..+. .-..-+||.+++
T Consensus 132 -----sP~gl~G~~~~~---~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p 203 (381)
T COG3055 132 -----SPTGLVGASTFS---LNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDP 203 (381)
T ss_pred -----cccccccceeEe---cCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhccccccccccc
Confidence 677755444442 566 899998864210 001224566666
Q ss_pred CCC-EEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEe-ec-----CCeEEEEECCCC--ceEECCCCCCCCCCC
Q 017381 285 GGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCC-YT-----WPEILYYNVARR--TWHWLPSCPSLPHKW 355 (372)
Q Consensus 285 ~~~-W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~-----~~~v~~yd~~~~--~w~~v~~~~~~~~~~ 355 (372)
.++ |......| |.. .....++..+|.+.+.. .. ..++..+|...+ +|.+++.+|-+....
T Consensus 204 ~~n~W~~~G~~p------f~~-----~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~ 272 (381)
T COG3055 204 STNQWRNLGENP------FYG-----NAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPIGSN 272 (381)
T ss_pred ccchhhhcCcCc------ccC-----ccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCCCCCC
Confidence 555 77555543 111 11233445677554443 32 124677777754 899998888776654
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00028 Score=61.94 Aligned_cols=40 Identities=38% Similarity=0.627 Sum_probs=36.7
Q ss_pred hhcCCCHHHHHHHHccCCchhhhHHhhchhhhhhcccChh
Q 017381 12 IWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPS 51 (372)
Q Consensus 12 ~~~~LP~dll~~IL~rLp~~~l~r~r~Vck~W~~~i~~~~ 51 (372)
.|-.||||++..|++.|+.++|.++..|||+|.++.++..
T Consensus 97 ~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~ 136 (419)
T KOG2120|consen 97 SWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDES 136 (419)
T ss_pred CcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcccccc
Confidence 4789999999999999999999999999999999877643
|
|
| >PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0013 Score=41.51 Aligned_cols=37 Identities=22% Similarity=0.189 Sum_probs=30.1
Q ss_pred EEEEeeCCEEEEEeecC------CeEEEEECCCCceEECCCCC
Q 017381 313 VYCFWHQGMICVCCYTW------PEILYYNVARRTWHWLPSCP 349 (372)
Q Consensus 313 ~~~~~~~~~i~~~~~~~------~~v~~yd~~~~~w~~v~~~~ 349 (372)
..++..++.||+.++.. ..+.+||+++++|+.++++|
T Consensus 5 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 5 HAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp EEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 55677899999998642 24899999999999998775
|
This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A .... |
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.13 Score=50.46 Aligned_cols=45 Identities=36% Similarity=0.533 Sum_probs=39.4
Q ss_pred hhhhcCCCHHHHHHHHccCCchhhhHHhhchhhhhhcccChhhhc
Q 017381 10 PAIWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSFLS 54 (372)
Q Consensus 10 ~~~~~~LP~dll~~IL~rLp~~~l~r~r~Vck~W~~~i~~~~F~~ 54 (372)
+.-++.||.++...||..|+.++++++++||+.|+.++.+.....
T Consensus 105 ~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~ 149 (537)
T KOG0274|consen 105 RDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWW 149 (537)
T ss_pred cchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhh
Confidence 446788999999999999999999999999999999987655444
|
|
| >PF13964 Kelch_6: Kelch motif | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0031 Score=40.35 Aligned_cols=38 Identities=11% Similarity=-0.138 Sum_probs=28.3
Q ss_pred EEecCcEEEEecCC------CceEEEEeccccceeccCCCCCCC
Q 017381 106 LSSSKGLLCFSLPS------SSSFLVCNLVTLSSRTIDFPTYPF 143 (372)
Q Consensus 106 ~~s~~Gll~~~~~~------~~~~~v~NP~t~~~~~lP~~~~~~ 143 (372)
+++.+|-|++.++. .+.+++|||.|++|..+|+++.++
T Consensus 7 ~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 7 AVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred EEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCCC
Confidence 45566655555442 358999999999999999987653
|
|
| >KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.16 Score=48.01 Aligned_cols=122 Identities=18% Similarity=0.205 Sum_probs=78.9
Q ss_pred CEEEEEEeecCCC--ceEEEEECCCCCccccccCCCCccccccCCCcccEEECCEEEEeeeC------------------
Q 017381 156 GYKIFMLFAKSFP--NYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPE------------------ 215 (372)
Q Consensus 156 ~ykvv~~~~~~~~--~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~~y~~~~~------------------ 215 (372)
.-|.|+.|++... ...+..|..+-+|.....+.+++ +++ .-+.++..++++|..++-
T Consensus 215 ~skmvvyGGM~G~RLgDLW~Ldl~Tl~W~kp~~~G~~P--lPR-SLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWk 291 (830)
T KOG4152|consen 215 KSKMVVYGGMSGCRLGDLWTLDLDTLTWNKPSLSGVAP--LPR-SLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWK 291 (830)
T ss_pred cceEEEEcccccccccceeEEecceeecccccccCCCC--CCc-ccccceeecceeEEecceeeeeccccccccccceee
Confidence 3466666665432 36778888899998876545543 442 346788999999998751
Q ss_pred -CcEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeEEEEEeeecC-----CccceEEEEEEcC
Q 017381 216 -PFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRN-----GISTTMKLWELGC 284 (372)
Q Consensus 216 -~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~-----~~~~~i~vw~l~~ 284 (372)
...+-++++++..|..+.....+.+. .|+.+..++.++ .+.+||+-.++... ...-+-++|-||.
T Consensus 292 CTssl~clNldt~~W~tl~~d~~ed~t-iPR~RAGHCAvA---igtRlYiWSGRDGYrKAwnnQVCCkDlWyLdT 362 (830)
T KOG4152|consen 292 CTSSLACLNLDTMAWETLLMDTLEDNT-IPRARAGHCAVA---IGTRLYIWSGRDGYRKAWNNQVCCKDLWYLDT 362 (830)
T ss_pred eccceeeeeecchheeeeeeccccccc-cccccccceeEE---eccEEEEEeccchhhHhhccccchhhhhhhcc
Confidence 13578889999999886433111111 677777666675 79999998875421 1112346777764
|
|
| >smart00612 Kelch Kelch domain | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.0075 Score=37.62 Aligned_cols=44 Identities=20% Similarity=0.340 Sum_probs=29.4
Q ss_pred EEEEEeecCC---CceEEEEECCCCCccccccCCCCccccccCCCcccEEECC
Q 017381 158 KIFMLFAKSF---PNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKG 207 (372)
Q Consensus 158 kvv~~~~~~~---~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G 207 (372)
+|+++||... ...+++||+++++|+..+ ++|. .+..+..+.++|
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~--~~~~----~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLP--SMPT----PRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCCCCeEccCC--CCCC----ccccceEEEeCC
Confidence 3677776532 358999999999999988 6664 223444555554
|
|
| >PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.02 Score=35.86 Aligned_cols=37 Identities=30% Similarity=0.457 Sum_probs=28.0
Q ss_pred CCCeEEEEEeeecCCccceEEEEEEcCCCC-EEEEEecC
Q 017381 258 ESNKLYLIGGVGRNGISTTMKLWELGCGGN-WIEVERVP 295 (372)
Q Consensus 258 ~~g~L~vv~~~~~~~~~~~i~vw~l~~~~~-W~~v~~lp 295 (372)
.+++||++||... .....-.++.+|...+ |+++..||
T Consensus 10 ~~~~iyv~GG~~~-~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 10 VGNKIYVIGGYDG-NNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp ETTEEEEEEEBES-TSSBEEEEEEEETTTTEEEEEEEES
T ss_pred ECCEEEEEeeecc-cCceeeeEEEEeCCCCEEEEcCCCC
Confidence 8999999999764 2334556777777666 99999886
|
This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A .... |
| >PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.008 Score=38.26 Aligned_cols=38 Identities=29% Similarity=0.621 Sum_probs=28.7
Q ss_pred CCCeEEEEEee-ecCCccceEEEEEEcCCCC-EEEEEecC
Q 017381 258 ESNKLYLIGGV-GRNGISTTMKLWELGCGGN-WIEVERVP 295 (372)
Q Consensus 258 ~~g~L~vv~~~-~~~~~~~~i~vw~l~~~~~-W~~v~~lp 295 (372)
.+++|||+++. .........++|.+|..+. |+++..+|
T Consensus 10 ~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 10 LDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred ECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 89999999997 2223445678888888776 99887664
|
This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding |
| >PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.019 Score=36.51 Aligned_cols=37 Identities=14% Similarity=0.143 Sum_probs=28.8
Q ss_pred EEEEeeCCEEEEEeec--------CCeEEEEECCCCceEECCCCC
Q 017381 313 VYCFWHQGMICVCCYT--------WPEILYYNVARRTWHWLPSCP 349 (372)
Q Consensus 313 ~~~~~~~~~i~~~~~~--------~~~v~~yd~~~~~w~~v~~~~ 349 (372)
..++..+++||+.+.. .+.+.+||+++++|+.++.+|
T Consensus 5 hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 5 HSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred eEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 4566778889998755 134899999999999988654
|
This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding |
| >KOG2997 consensus F-box protein FBX9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.0023 Score=56.47 Aligned_cols=44 Identities=20% Similarity=0.397 Sum_probs=38.4
Q ss_pred hcCCCHHHHHHHHccC-----CchhhhHHhhchhhhhhcccChhhhccc
Q 017381 13 WSRLPEDLLDHVLSFL-----PPKMLLKLRSTCKHFNSLLFSPSFLSKT 56 (372)
Q Consensus 13 ~~~LP~dll~~IL~rL-----p~~~l~r~r~Vck~W~~~i~~~~F~~~~ 56 (372)
++.||+|++.+||.++ ++.+|.++.+|||.|.....+|.|-+..
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~a 155 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLA 155 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHH
Confidence 4689999999999987 3699999999999999999998876553
|
|
| >PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.014 Score=37.05 Aligned_cols=33 Identities=24% Similarity=0.455 Sum_probs=19.9
Q ss_pred eeCCEEEEEeec------CCeEEEEECCCCceEECCCCC
Q 017381 317 WHQGMICVCCYT------WPEILYYNVARRTWHWLPSCP 349 (372)
Q Consensus 317 ~~~~~i~~~~~~------~~~v~~yd~~~~~w~~v~~~~ 349 (372)
..++.||+.++. .+.+.+||+++++|++++++|
T Consensus 10 ~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 10 IGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp E-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred EeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence 345677777642 235899999999999997776
|
|
| >PF13415 Kelch_3: Galactose oxidase, central domain | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.016 Score=36.78 Aligned_cols=26 Identities=12% Similarity=0.382 Sum_probs=21.6
Q ss_pred CeEEEEECCCCceEECCCCCCCCCCC
Q 017381 330 PEILYYNVARRTWHWLPSCPSLPHKW 355 (372)
Q Consensus 330 ~~v~~yd~~~~~w~~v~~~~~~~~~~ 355 (372)
+.+.+||+++++|++++..|.++.-+
T Consensus 19 nd~~~~~~~~~~W~~~~~~P~~R~~h 44 (49)
T PF13415_consen 19 NDVWVFDLDTNTWTRIGDLPPPRSGH 44 (49)
T ss_pred cCEEEEECCCCEEEECCCCCCCccce
Confidence 45899999999999998888776543
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=95.81 E-value=1.2 Score=39.09 Aligned_cols=200 Identities=15% Similarity=0.172 Sum_probs=106.3
Q ss_pred EecCcEEEEecCCCceEEEEeccccceeccCCCCCCCCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCCcccccc
Q 017381 107 SSSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDI 186 (372)
Q Consensus 107 ~s~~Gll~~~~~~~~~~~v~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~~~~ 186 (372)
...+|-+++.....+.++.+||.+++...+.... ..++++... +-++++... ....++|..+++++.+.
T Consensus 8 d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~----~~G~~~~~~--~g~l~v~~~----~~~~~~d~~~g~~~~~~- 76 (246)
T PF08450_consen 8 DPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG----PNGMAFDRP--DGRLYVADS----GGIAVVDPDTGKVTVLA- 76 (246)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS----EEEEEEECT--TSEEEEEET----TCEEEEETTTTEEEEEE-
T ss_pred ECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC----CceEEEEcc--CCEEEEEEc----CceEEEecCCCcEEEEe-
Confidence 3345655555555678999999999876544332 234444422 235665543 34567799999998776
Q ss_pred CCCCccccccCCCcc-cEEECCEEEEeeeCC--------cEEEEEecCCCeeeccCCCCccccccCCCcccccceeeecc
Q 017381 187 DGFPSMILSQSSHQE-GVFYKGSLYFTTPEP--------FSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGE 257 (372)
Q Consensus 187 ~~~p~~~~~~~~~~~-~v~~~G~~y~~~~~~--------~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~ 257 (372)
..+....+...... .+--+|.+|+..... ..+..+|+. .+...+... .-.|.+ +...
T Consensus 77 -~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~-----~~~pNG-----i~~s-- 142 (246)
T PF08450_consen 77 -DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG-----LGFPNG-----IAFS-- 142 (246)
T ss_dssp -EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE-----ESSEEE-----EEEE--
T ss_pred -eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC-----cccccc-----eEEC--
Confidence 33210101111111 222378988765421 358888888 555443211 002332 2212
Q ss_pred CCCe-EEEEEeeecCCccceEEEEEEcCCCC-EEEEEec---ChHHHHHhhhhccCCCceEEEEeeCCEEEEEeecCCeE
Q 017381 258 ESNK-LYLIGGVGRNGISTTMKLWELGCGGN-WIEVERV---PEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEI 332 (372)
Q Consensus 258 ~~g~-L~vv~~~~~~~~~~~i~vw~l~~~~~-W~~v~~l---p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v 332 (372)
-+|+ ||+... ....|..+.++..+. +.....+ +... ....-.++..++.||+.....+.|
T Consensus 143 ~dg~~lyv~ds-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~----------g~pDG~~vD~~G~l~va~~~~~~I 207 (246)
T PF08450_consen 143 PDGKTLYVADS-----FNGRIWRFDLDADGGELSNRRVFIDFPGGP----------GYPDGLAVDSDGNLWVADWGGGRI 207 (246)
T ss_dssp TTSSEEEEEET-----TTTEEEEEEEETTTCCEEEEEEEEE-SSSS----------CEEEEEEEBTTS-EEEEEETTTEE
T ss_pred Ccchheeeccc-----ccceeEEEeccccccceeeeeeEEEcCCCC----------cCCCcceEcCCCCEEEEEcCCCEE
Confidence 4665 666543 234556666654444 5543322 2110 012234555567799998888899
Q ss_pred EEEECCCCceEECC
Q 017381 333 LYYNVARRTWHWLP 346 (372)
Q Consensus 333 ~~yd~~~~~w~~v~ 346 (372)
.+||++-+....++
T Consensus 208 ~~~~p~G~~~~~i~ 221 (246)
T PF08450_consen 208 VVFDPDGKLLREIE 221 (246)
T ss_dssp EEEETTSCEEEEEE
T ss_pred EEECCCccEEEEEc
Confidence 99999955555554
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.67 Score=40.48 Aligned_cols=154 Identities=14% Similarity=0.214 Sum_probs=80.3
Q ss_pred eEEEEECCCCCccccccCCCCccccccCCCcccEEECCEEEEeeeC---CcEEEEEecCC----CeeeccCCCCcccccc
Q 017381 170 YAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPE---PFSIVRFDLEN----GIWETPNDANDHMTMM 242 (372)
Q Consensus 170 ~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~~y~~~~~---~~~i~~yD~~~----~~w~~i~~p~~~~~~~ 242 (372)
...+||+.+++++.+. +..-.+ +....+.-||.+...++. ...+..|++.+ ..|...... +-
T Consensus 47 ~s~~yD~~tn~~rpl~---v~td~F---CSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~-----m~ 115 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLT---VQTDTF---CSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPND-----MQ 115 (243)
T ss_pred EEEEEecCCCcEEecc---CCCCCc---ccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECccc-----cc
Confidence 4568999999999886 222011 122233447888877653 34578888865 567653211 00
Q ss_pred CCCcccccceeeeccCCCeEEEEEeeecCCccceEEEEEEcCCC-CEEEEEecChHHHHHhhhhccCCCceEEEEeeCCE
Q 017381 243 LPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGG-NWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGM 321 (372)
Q Consensus 243 ~p~~~~~~~lv~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~~~~-~W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (372)
.++-.....++ -||++++++|.. ....+.|--.... ......-+. +.. .... .....+..+.-++.
T Consensus 116 ~~RWYpT~~~L----~DG~vlIvGG~~----~~t~E~~P~~~~~~~~~~~~~l~-~~~-~~~~---~nlYP~~~llPdG~ 182 (243)
T PF07250_consen 116 SGRWYPTATTL----PDGRVLIVGGSN----NPTYEFWPPKGPGPGPVTLPFLS-QTS-DTLP---NNLYPFVHLLPDGN 182 (243)
T ss_pred CCCccccceEC----CCCCEEEEeCcC----CCcccccCCccCCCCceeeecch-hhh-ccCc---cccCceEEEcCCCC
Confidence 12211122232 589999999843 2344555221111 111111111 100 0010 12233444445566
Q ss_pred EEEEeecCCeEEEEECCCCce-EECCCCC
Q 017381 322 ICVCCYTWPEILYYNVARRTW-HWLPSCP 349 (372)
Q Consensus 322 i~~~~~~~~~v~~yd~~~~~w-~~v~~~~ 349 (372)
|++... ..-..||..++++ +.+|.+|
T Consensus 183 lFi~an--~~s~i~d~~~n~v~~~lP~lP 209 (243)
T PF07250_consen 183 LFIFAN--RGSIIYDYKTNTVVRTLPDLP 209 (243)
T ss_pred EEEEEc--CCcEEEeCCCCeEEeeCCCCC
Confidence 676653 3467889999987 7788777
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >smart00612 Kelch Kelch domain | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.032 Score=34.66 Aligned_cols=25 Identities=24% Similarity=0.449 Sum_probs=21.0
Q ss_pred CeEEEEECCCCceEECCCCCCCCCC
Q 017381 330 PEILYYNVARRTWHWLPSCPSLPHK 354 (372)
Q Consensus 330 ~~v~~yd~~~~~w~~v~~~~~~~~~ 354 (372)
..+.+||+++++|+.++.+|..+..
T Consensus 15 ~~v~~yd~~~~~W~~~~~~~~~r~~ 39 (47)
T smart00612 15 KSVEVYDPETNKWTPLPSMPTPRSG 39 (47)
T ss_pred eeEEEECCCCCeEccCCCCCCcccc
Confidence 4589999999999999988876644
|
|
| >KOG2437 consensus Muskelin [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.048 Score=51.36 Aligned_cols=138 Identities=19% Similarity=0.310 Sum_probs=87.6
Q ss_pred CCCcccEEECC--EEEEeeeCC-----cEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeEEEEEeee
Q 017381 197 SSHQEGVFYKG--SLYFTTPEP-----FSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVG 269 (372)
Q Consensus 197 ~~~~~~v~~~G--~~y~~~~~~-----~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~ 269 (372)
+..++.|+..| .+|.-++-. ....+|....+.|..+..-++ .|..+.++++|. .....|||++|..-
T Consensus 261 RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~-----~PG~RsCHRMVi-d~S~~KLYLlG~Y~ 334 (723)
T KOG2437|consen 261 RGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTE-----GPGARSCHRMVI-DISRRKLYLLGRYL 334 (723)
T ss_pred cCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCC-----CCcchhhhhhhh-hhhHhHHhhhhhcc
Confidence 45677888888 899877521 235789999999998753322 678888888884 22566899998654
Q ss_pred cC----CccceEEEEEEcCCCC-EEEEEecChHHHHHhhhhccCCCceEEEE-eeCCEEEEEeec--------CCeEEEE
Q 017381 270 RN----GISTTMKLWELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCF-WHQGMICVCCYT--------WPEILYY 335 (372)
Q Consensus 270 ~~----~~~~~i~vw~l~~~~~-W~~v~~lp~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~--------~~~v~~y 335 (372)
+. ....+-++|++|-+++ |..+.. ..+- +-.+. ..+....++ +..+.||+.++- -..+.+|
T Consensus 335 ~sS~r~~~s~RsDfW~FDi~~~~W~~ls~-dt~~--dGGP~--~vfDHqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf 409 (723)
T KOG2437|consen 335 DSSVRNSKSLRSDFWRFDIDTNTWMLLSE-DTAA--DGGPK--LVFDHQMCVDSEKHMIYVFGGRILTCNEPQFSGLYAF 409 (723)
T ss_pred ccccccccccccceEEEecCCceeEEecc-cccc--cCCcc--eeecceeeEecCcceEEEecCeeccCCCccccceEEE
Confidence 32 2234678999998776 997632 1110 00000 011222344 455678888742 1348999
Q ss_pred ECCCCceEEC
Q 017381 336 NVARRTWHWL 345 (372)
Q Consensus 336 d~~~~~w~~v 345 (372)
|.+...|+-+
T Consensus 410 ~~~~~~w~~l 419 (723)
T KOG2437|consen 410 NCQCQTWKLL 419 (723)
T ss_pred ecCCccHHHH
Confidence 9999999754
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.63 E-value=4.3 Score=34.97 Aligned_cols=213 Identities=9% Similarity=0.053 Sum_probs=96.0
Q ss_pred cCcEEEEecCCCceEEEEeccccceeccCCCCCCCCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCC----cccc
Q 017381 109 SKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQS----WSKF 184 (372)
Q Consensus 109 ~~Gll~~~~~~~~~~~v~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~----W~~~ 184 (372)
.+|--|+..+.+..+.+|||..+....-=.- .....+-.+...+.-|+-..|+ +..+++||..+|+ |+..
T Consensus 27 ~dGnY~ltcGsdrtvrLWNp~rg~liktYsg---hG~EVlD~~~s~Dnskf~s~Gg---Dk~v~vwDV~TGkv~Rr~rgH 100 (307)
T KOG0316|consen 27 VDGNYCLTCGSDRTVRLWNPLRGALIKTYSG---HGHEVLDAALSSDNSKFASCGG---DKAVQVWDVNTGKVDRRFRGH 100 (307)
T ss_pred cCCCEEEEcCCCceEEeecccccceeeeecC---CCceeeeccccccccccccCCC---CceEEEEEcccCeeeeecccc
Confidence 3454555555678899999998875431000 0000000111122224443333 4688999998874 4443
Q ss_pred ccCCCCccccccCCCcccEEECC--EEEEeeeCCcEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeE
Q 017381 185 DIDGFPSMILSQSSHQEGVFYKG--SLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKL 262 (372)
Q Consensus 185 ~~~~~p~~~~~~~~~~~~v~~~G--~~y~~~~~~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L 262 (372)
.. .-+.|.+|. .+...++-...+.++|-.+.+++.++.-.+..+-.+.-....+.+++ |..+|.+
T Consensus 101 ~a------------qVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIva-GS~DGtv 167 (307)
T KOG0316|consen 101 LA------------QVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVA-GSVDGTV 167 (307)
T ss_pred cc------------eeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEe-eccCCcE
Confidence 31 122344443 22222222456888998888877665220000000000112234442 5566665
Q ss_pred EEEEeeec----CCccceEEEEEEcCCCCEEEEEecChH----------HHHHhhhhccCCCceEEEE-eeCCEEEEEee
Q 017381 263 YLIGGVGR----NGISTTMKLWELGCGGNWIEVERVPEM----------MCRKFMSVCYHNYDHVYCF-WHQGMICVCCY 327 (372)
Q Consensus 263 ~vv~~~~~----~~~~~~i~vw~l~~~~~W~~v~~lp~~----------~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~ 327 (372)
-....... +.....|.--.+..+++-+.+..|... ....+.+..-.. ...-|. .+.+...+.+.
T Consensus 168 RtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~e-ykldc~l~qsdthV~sgS 246 (307)
T KOG0316|consen 168 RTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNME-YKLDCCLNQSDTHVFSGS 246 (307)
T ss_pred EEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccce-eeeeeeecccceeEEecc
Confidence 44433211 011122333333344556665554321 222222210001 112333 44455555554
Q ss_pred cCCeEEEEECCCCc
Q 017381 328 TWPEILYYNVARRT 341 (372)
Q Consensus 328 ~~~~v~~yd~~~~~ 341 (372)
..+.|+.||+...+
T Consensus 247 EDG~Vy~wdLvd~~ 260 (307)
T KOG0316|consen 247 EDGKVYFWDLVDET 260 (307)
T ss_pred CCceEEEEEeccce
Confidence 45578999988764
|
|
| >PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium [] | Back alignment and domain information |
|---|
Probab=93.49 E-value=5 Score=35.35 Aligned_cols=132 Identities=17% Similarity=0.178 Sum_probs=77.7
Q ss_pred CcccEEECCEEEEeeeCCcEEEEEecCCCeee-ccCCCCccccccCC---CcccccceeeeccCCCeEEEEEeeecCCcc
Q 017381 199 HQEGVFYKGSLYFTTPEPFSIVRFDLENGIWE-TPNDANDHMTMMLP---HELTFFRLVNDGEESNKLYLIGGVGRNGIS 274 (372)
Q Consensus 199 ~~~~v~~~G~~y~~~~~~~~i~~yD~~~~~w~-~i~~p~~~~~~~~p---~~~~~~~lv~e~~~~g~L~vv~~~~~~~~~ 274 (372)
....|+.||.+|+.......|+.||+.++.-. ....|+....-..| .+.....+.+ -+.-|.+|....+ ..
T Consensus 71 GtG~vVYngslYY~~~~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~Av---DE~GLWvIYat~~--~~ 145 (250)
T PF02191_consen 71 GTGHVVYNGSLYYNKYNSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAV---DENGLWVIYATED--NN 145 (250)
T ss_pred cCCeEEECCcEEEEecCCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEE---cCCCEEEEEecCC--CC
Confidence 34467889999999887778999999988776 43333110000011 1112245554 4677999877432 22
Q ss_pred ceEEEEEEcCCC-----CEEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeecC---Ce-EEEEECCCCceEEC
Q 017381 275 TTMKLWELGCGG-----NWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTW---PE-ILYYNVARRTWHWL 345 (372)
Q Consensus 275 ~~i~vw~l~~~~-----~W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~-v~~yd~~~~~w~~v 345 (372)
..|-|=++|+.. +|.. .++.. ....++...|.+|...... .+ -.+||+.+++-+.
T Consensus 146 g~ivvskld~~tL~v~~tw~T--~~~k~-------------~~~naFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~- 209 (250)
T PF02191_consen 146 GNIVVSKLDPETLSVEQTWNT--SYPKR-------------SAGNAFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEED- 209 (250)
T ss_pred CcEEEEeeCcccCceEEEEEe--ccCch-------------hhcceeeEeeEEEEEEECCCCCcEEEEEEECCCCceec-
Confidence 347777777653 2763 22221 1123555677788776432 23 5899999987764
Q ss_pred CCCCCC
Q 017381 346 PSCPSL 351 (372)
Q Consensus 346 ~~~~~~ 351 (372)
+..++.
T Consensus 210 ~~i~f~ 215 (250)
T PF02191_consen 210 VSIPFP 215 (250)
T ss_pred eeeeec
Confidence 445553
|
Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=93.11 E-value=3.7 Score=36.27 Aligned_cols=119 Identities=10% Similarity=0.157 Sum_probs=72.2
Q ss_pred EEEecCcEEEEecCCCceEEEEeccccceeccCCCCC-CCCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCCccc
Q 017381 105 LLSSSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTY-PFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSK 183 (372)
Q Consensus 105 ~~~s~~Gll~~~~~~~~~~~v~NP~t~~~~~lP~~~~-~~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~ 183 (372)
+++.-+|-+.+..-..+.+...||+++.-..+|++.. ......+..++.+ ++-.. ......++.||+.+.+|.+
T Consensus 194 i~atpdGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig---~~wit--twg~g~l~rfdPs~~sW~e 268 (353)
T COG4257 194 ICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIG---RAWIT--TWGTGSLHRFDPSVTSWIE 268 (353)
T ss_pred eEECCCCcEEEEeccccceEEcccccCCcceecCCCcccccccccccCccC---cEEEe--ccCCceeeEeCccccccee
Confidence 5667777666654445678889999998777776642 1111122222211 22221 2234588999999999988
Q ss_pred cccCCCCccccccCCCcccEEEC--CEEEEeeeCCcEEEEEecCCCeeeccCCC
Q 017381 184 FDIDGFPSMILSQSSHQEGVFYK--GSLYFTTPEPFSIVRFDLENGIWETPNDA 235 (372)
Q Consensus 184 ~~~~~~p~~~~~~~~~~~~v~~~--G~~y~~~~~~~~i~~yD~~~~~w~~i~~p 235 (372)
.. +|.. - ..-...+++ |.+.....+...|..||+.+.+++++..|
T Consensus 269 yp---LPgs-~---arpys~rVD~~grVW~sea~agai~rfdpeta~ftv~p~p 315 (353)
T COG4257 269 YP---LPGS-K---ARPYSMRVDRHGRVWLSEADAGAIGRFDPETARFTVLPIP 315 (353)
T ss_pred ee---CCCC-C---CCcceeeeccCCcEEeeccccCceeecCcccceEEEecCC
Confidence 86 4431 1 122345554 45544344556799999999999987533
|
|
| >PF13415 Kelch_3: Galactose oxidase, central domain | Back alignment and domain information |
|---|
Probab=92.95 E-value=0.38 Score=30.37 Aligned_cols=27 Identities=19% Similarity=-0.033 Sum_probs=22.0
Q ss_pred ceEEEEeccccceeccCCCCCCCCcee
Q 017381 121 SSFLVCNLVTLSSRTIDFPTYPFDFEL 147 (372)
Q Consensus 121 ~~~~v~NP~t~~~~~lP~~~~~~~~~~ 147 (372)
+.++++|+.+++|.+++.+|.++..+.
T Consensus 19 nd~~~~~~~~~~W~~~~~~P~~R~~h~ 45 (49)
T PF13415_consen 19 NDVWVFDLDTNTWTRIGDLPPPRSGHT 45 (49)
T ss_pred cCEEEEECCCCEEEECCCCCCCccceE
Confidence 579999999999999988776665443
|
|
| >PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B | Back alignment and domain information |
|---|
Probab=92.77 E-value=0.25 Score=31.08 Aligned_cols=36 Identities=31% Similarity=0.726 Sum_probs=20.0
Q ss_pred CCeEEEEEeeecCCccceEEEEEEcCCCC-EEEEEecC
Q 017381 259 SNKLYLIGGVGRNGISTTMKLWELGCGGN-WIEVERVP 295 (372)
Q Consensus 259 ~g~L~vv~~~~~~~~~~~i~vw~l~~~~~-W~~v~~lp 295 (372)
+++|++++|..... ...-++|.+|..++ |+++..+|
T Consensus 12 ~~~i~v~GG~~~~~-~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 12 DNSIYVFGGRDSSG-SPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp TTEEEEE--EEE-T-EE---EEEEETTTTEEEE--SS-
T ss_pred CCeEEEECCCCCCC-cccCCEEEEECCCCEEEECCCCC
Confidence 68999999975422 23446788887766 99997766
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=92.63 E-value=4.4 Score=35.78 Aligned_cols=152 Identities=13% Similarity=0.073 Sum_probs=83.0
Q ss_pred EEEEEeecCCCceEEEEECCCCCccccccCCCCccccccCCCccc-EEECCEEEEeeeCCcEEEEEecCCCeeeccCCCC
Q 017381 158 KIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEG-VFYKGSLYFTTPEPFSIVRFDLENGIWETPNDAN 236 (372)
Q Consensus 158 kvv~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~-v~~~G~~y~~~~~~~~i~~yD~~~~~w~~i~~p~ 236 (372)
.++--.|....+.+..||..+++=.... .+|. ..+..+ +.+++++|.++........||..+- +.+. .
T Consensus 57 ~LyESTG~yG~S~l~~~d~~tg~~~~~~--~l~~-----~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl--~~~~-~- 125 (264)
T PF05096_consen 57 TLYESTGLYGQSSLRKVDLETGKVLQSV--PLPP-----RYFGEGITILGDKLYQLTWKEGTGFVYDPNTL--KKIG-T- 125 (264)
T ss_dssp EEEEEECSTTEEEEEEEETTTSSEEEEE--E-TT-----T--EEEEEEETTEEEEEESSSSEEEEEETTTT--EEEE-E-
T ss_pred EEEEeCCCCCcEEEEEEECCCCcEEEEE--ECCc-----cccceeEEEECCEEEEEEecCCeEEEEccccc--eEEE-E-
Confidence 4554444455678999999998644333 3443 234444 5679999999998888999999753 2221 0
Q ss_pred ccccccCCCcccccceeeeccCCCeEEEEEeeecCCccceEEEEEEcCCCCEEEEEecChHHHHHhhhhccCCCceEEEE
Q 017381 237 DHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCF 316 (372)
Q Consensus 237 ~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~~~~ 316 (372)
.+-..+...|.. -+..|++.+|. . .++.+|+. +.+.+.++.... . +..+...+..+++
T Consensus 126 ------~~y~~EGWGLt~---dg~~Li~SDGS------~--~L~~~dP~-~f~~~~~i~V~~--~--g~pv~~LNELE~i 183 (264)
T PF05096_consen 126 ------FPYPGEGWGLTS---DGKRLIMSDGS------S--RLYFLDPE-TFKEVRTIQVTD--N--GRPVSNLNELEYI 183 (264)
T ss_dssp ------EE-SSS--EEEE---CSSCEEEE-SS------S--EEEEE-TT-T-SEEEEEE-EE--T--TEE---EEEEEEE
T ss_pred ------EecCCcceEEEc---CCCEEEEECCc------c--ceEEECCc-ccceEEEEEEEE--C--CEECCCcEeEEEE
Confidence 112224456663 45567776652 2 45556653 233333332110 0 0011122344444
Q ss_pred eeCCEEEEEeecCCeEEEEECCCCceEE
Q 017381 317 WHQGMICVCCYTWPEILYYNVARRTWHW 344 (372)
Q Consensus 317 ~~~~~i~~~~~~~~~v~~yd~~~~~w~~ 344 (372)
++.||.--...+.|+.-|+++++-..
T Consensus 184 --~G~IyANVW~td~I~~Idp~tG~V~~ 209 (264)
T PF05096_consen 184 --NGKIYANVWQTDRIVRIDPETGKVVG 209 (264)
T ss_dssp --TTEEEEEETTSSEEEEEETTT-BEEE
T ss_pred --cCEEEEEeCCCCeEEEEeCCCCeEEE
Confidence 67788776667789999999986654
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >TIGR01640 F_box_assoc_1 F-box protein interaction domain | Back alignment and domain information |
|---|
Probab=92.33 E-value=3.4 Score=35.74 Aligned_cols=147 Identities=17% Similarity=0.242 Sum_probs=71.4
Q ss_pred ccccccCCCCCeeeecCCCCCCCCCceEEEEecCcEEEEecC----CCc-eEEEEeccccceec-cCCCCCCC-CceeEE
Q 017381 77 QYPLYDSTHGTWRRLSLPYSLLLPSAATLLSSSKGLLCFSLP----SSS-SFLVCNLVTLSSRT-IDFPTYPF-DFELLT 149 (372)
Q Consensus 77 ~~~~~d~~~~~w~~l~~~~~~~~~~~~~~~~s~~Gll~~~~~----~~~-~~~v~NP~t~~~~~-lP~~~~~~-~~~~~~ 149 (372)
.+..|+...+.|+.+..+......... -...||.++.... ... .+..||..+.++.. +|.+.... ......
T Consensus 71 ~~~Vys~~~~~Wr~~~~~~~~~~~~~~--~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~ 148 (230)
T TIGR01640 71 EHQVYTLGSNSWRTIECSPPHHPLKSR--GVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLS 148 (230)
T ss_pred cEEEEEeCCCCccccccCCCCccccCC--eEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccccccceE
Confidence 456788888899987632111111111 2245775433221 111 68889999999994 76553221 111122
Q ss_pred EEeCCCCEEEEEEeecCCCceEEEEEC---CCCCccccccCCCCc-cccccCCCcccEEECCEEEEeeeC--CcEEEEEe
Q 017381 150 LVSTPSGYKIFMLFAKSFPNYAFVYDS---TDQSWSKFDIDGFPS-MILSQSSHQEGVFYKGSLYFTTPE--PFSIVRFD 223 (372)
Q Consensus 150 ~~~~~~~ykvv~~~~~~~~~~~~vy~s---~~~~W~~~~~~~~p~-~~~~~~~~~~~v~~~G~~y~~~~~--~~~i~~yD 223 (372)
+..-.+ ++..+........++|+-. +...|+..-..+++. ..+.......++.-+|.+...... ...++.||
T Consensus 149 L~~~~G--~L~~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~~~~~~~y~ 226 (230)
T TIGR01640 149 LINYKG--KLAVLKQKKDTNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFYIFYYN 226 (230)
T ss_pred EEEECC--EEEEEEecCCCCcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCCceEEEEEe
Confidence 222112 3444333222222444433 355797654112211 011111112345567888877654 33489999
Q ss_pred cCCC
Q 017381 224 LENG 227 (372)
Q Consensus 224 ~~~~ 227 (372)
+.++
T Consensus 227 ~~~~ 230 (230)
T TIGR01640 227 VGEN 230 (230)
T ss_pred ccCC
Confidence 8764
|
This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. |
| >PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function | Back alignment and domain information |
|---|
Probab=92.29 E-value=4.7 Score=37.39 Aligned_cols=122 Identities=15% Similarity=0.197 Sum_probs=67.8
Q ss_pred ceEEEEecCc-EEEEecCCCceEEEEeccccceeccCCCCCCCCceeEEEEeCCCCEEEEEEeecCCC-----c---eEE
Q 017381 102 AATLLSSSKG-LLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFP-----N---YAF 172 (372)
Q Consensus 102 ~~~~~~s~~G-ll~~~~~~~~~~~v~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~~~-----~---~~~ 172 (372)
...+.+..+. ++++.. .....+||+.|+....+|.+..+.... +.+. .++ +|+++...... . ..|
T Consensus 68 ~~~F~al~gskIv~~d~--~~~t~vyDt~t~av~~~P~l~~pk~~p-isv~-VG~--~LY~m~~~~~~~~~~~~~~~~FE 141 (342)
T PF07893_consen 68 SMDFFALHGSKIVAVDQ--SGRTLVYDTDTRAVATGPRLHSPKRCP-ISVS-VGD--KLYAMDRSPFPEPAGRPDFPCFE 141 (342)
T ss_pred eeEEEEecCCeEEEEcC--CCCeEEEECCCCeEeccCCCCCCCcce-EEEE-eCC--eEEEeeccCccccccCccceeEE
Confidence 3444444333 444433 367999999999999999876554433 2221 122 57777653211 0 344
Q ss_pred EE--EC--------CCCCccccccCCCCccccccCC----CcccEEECCEEEEeeeCCc--EEEEEecCCCeeecc
Q 017381 173 VY--DS--------TDQSWSKFDIDGFPSMILSQSS----HQEGVFYKGSLYFTTPEPF--SIVRFDLENGIWETP 232 (372)
Q Consensus 173 vy--~s--------~~~~W~~~~~~~~p~~~~~~~~----~~~~v~~~G~~y~~~~~~~--~i~~yD~~~~~w~~i 232 (372)
++ +. +.-+|+.++ . |+....... ...-++++|.-.|+..... ...+||+.+.+|+..
T Consensus 142 ~l~~~~~~~~~~~~~~w~W~~LP--~-PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~~GTysfDt~~~~W~~~ 214 (342)
T PF07893_consen 142 ALVYRPPPDDPSPEESWSWRSLP--P-PPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRRWGTYSFDTESHEWRKH 214 (342)
T ss_pred EeccccccccccCCCcceEEcCC--C-CCccccCCcccceEEEEEEecCCeEEEEecCCceEEEEEEcCCcceeec
Confidence 44 41 223567765 3 431111111 1122233787777755443 689999999999875
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=92.24 E-value=10 Score=35.78 Aligned_cols=181 Identities=12% Similarity=0.104 Sum_probs=96.2
Q ss_pred ecCcEEEEecCCCceEEEEeccccceeccCCCCCC-CCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCC--cccc
Q 017381 108 SSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYP-FDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQS--WSKF 184 (372)
Q Consensus 108 s~~Gll~~~~~~~~~~~v~NP~t~~~~~lP~~~~~-~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~--W~~~ 184 (372)
..+|.+++.. ..+.++.+|+.|++...--..+.. ...+. +. +. ++++.. ....+..+|.++++ |+..
T Consensus 118 v~~~~v~v~~-~~g~l~ald~~tG~~~W~~~~~~~~~ssP~--v~---~~-~v~v~~---~~g~l~ald~~tG~~~W~~~ 187 (394)
T PRK11138 118 VAGGKVYIGS-EKGQVYALNAEDGEVAWQTKVAGEALSRPV--VS---DG-LVLVHT---SNGMLQALNESDGAVKWTVN 187 (394)
T ss_pred EECCEEEEEc-CCCEEEEEECCCCCCcccccCCCceecCCE--EE---CC-EEEEEC---CCCEEEEEEccCCCEeeeec
Confidence 3456666544 356889999999983221111111 11111 11 11 444422 23468889988775 8776
Q ss_pred ccCCCCccccccCCCcccEEECCEEEEeeeCCcEEEEEecCCC--eeeccCCCCccccccCCCc---------cccccee
Q 017381 185 DIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENG--IWETPNDANDHMTMMLPHE---------LTFFRLV 253 (372)
Q Consensus 185 ~~~~~p~~~~~~~~~~~~v~~~G~~y~~~~~~~~i~~yD~~~~--~w~~i~~p~~~~~~~~p~~---------~~~~~lv 253 (372)
. ..|. ........++..+|.+|+...+ ..+.++|..+. .|+.-. . .|.. .....++
T Consensus 188 ~--~~~~--~~~~~~~sP~v~~~~v~~~~~~-g~v~a~d~~~G~~~W~~~~-~-------~~~~~~~~~~~~~~~~sP~v 254 (394)
T PRK11138 188 L--DVPS--LTLRGESAPATAFGGAIVGGDN-GRVSAVLMEQGQLIWQQRI-S-------QPTGATEIDRLVDVDTTPVV 254 (394)
T ss_pred C--CCCc--ccccCCCCCEEECCEEEEEcCC-CEEEEEEccCChhhheecc-c-------cCCCccchhcccccCCCcEE
Confidence 5 3222 1111224567778888875544 35889998865 465311 1 1111 0122333
Q ss_pred eeccCCCeEEEEEeeecCCccceEEEEEEcCC-CC--EEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeecCC
Q 017381 254 NDGEESNKLYLIGGVGRNGISTTMKLWELGCG-GN--WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWP 330 (372)
Q Consensus 254 ~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~~~-~~--W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 330 (372)
.+|.||+.+.. . .++.+|.. ++ |+.- .+ ... ..+..++.||+... .+
T Consensus 255 ----~~~~vy~~~~~------g--~l~ald~~tG~~~W~~~--~~-------------~~~--~~~~~~~~vy~~~~-~g 304 (394)
T PRK11138 255 ----VGGVVYALAYN------G--NLVALDLRSGQIVWKRE--YG-------------SVN--DFAVDGGRIYLVDQ-ND 304 (394)
T ss_pred ----ECCEEEEEEcC------C--eEEEEECCCCCEEEeec--CC-------------Ccc--CcEEECCEEEEEcC-CC
Confidence 57888886541 2 34444433 33 8742 11 001 12345778888763 46
Q ss_pred eEEEEECCCCc
Q 017381 331 EILYYNVARRT 341 (372)
Q Consensus 331 ~v~~yd~~~~~ 341 (372)
.+++.|.++++
T Consensus 305 ~l~ald~~tG~ 315 (394)
T PRK11138 305 RVYALDTRGGV 315 (394)
T ss_pred eEEEEECCCCc
Confidence 89999999884
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.06 E-value=5.2 Score=37.24 Aligned_cols=180 Identities=13% Similarity=0.171 Sum_probs=91.3
Q ss_pred ceEEEEeccccceeccCCCCCCCCceeEEEEeCCCCEEEEEEeecCCCceEEEEECC---CCCccccccCCCCccccccC
Q 017381 121 SSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDST---DQSWSKFDIDGFPSMILSQS 197 (372)
Q Consensus 121 ~~~~v~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~---~~~W~~~~~~~~p~~~~~~~ 197 (372)
..+.+||..|+.-+..=+-....+....+..+. .+++| .|+. +..+..+|.. .+.|+-+. .|.
T Consensus 291 e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pD--g~~~V-~Gs~--dr~i~~wdlDgn~~~~W~gvr---~~~------ 356 (519)
T KOG0293|consen 291 EVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPD--GFRFV-TGSP--DRTIIMWDLDGNILGNWEGVR---DPK------ 356 (519)
T ss_pred HheeeccCCcchhhhhcccCcCCCcceeEEccC--CceeE-ecCC--CCcEEEecCCcchhhcccccc---cce------
Confidence 457778888888554422211112122222222 23333 2321 2344445553 35788775 232
Q ss_pred CCcccEEECCEEEEeeeCCcEEEEEecCCCeee-ccCCCCccccccCCCcccccceeeeccCCCeEEEEEeeecCCccce
Q 017381 198 SHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWE-TPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTT 276 (372)
Q Consensus 198 ~~~~~v~~~G~~y~~~~~~~~i~~yD~~~~~w~-~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~~~~~~ 276 (372)
...-++..+|+-..+......|..|+..+..-. .+. .........+- -+|++.++... ...
T Consensus 357 v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis---------e~~~its~~iS----~d~k~~LvnL~-----~qe 418 (519)
T KOG0293|consen 357 VHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS---------EEQPITSFSIS----KDGKLALVNLQ-----DQE 418 (519)
T ss_pred eEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc---------ccCceeEEEEc----CCCcEEEEEcc-----cCe
Confidence 122345567754443333345888887654333 222 11222223443 68999998762 367
Q ss_pred EEEEEEcCCCCEEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeecC-CeEEEEECCCCceE
Q 017381 277 MKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTW-PEILYYNVARRTWH 343 (372)
Q Consensus 277 i~vw~l~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~v~~yd~~~~~w~ 343 (372)
+..|.+. .|.. .+++++..-+.+..-.|+|.+|.-++.++.+ .+|..||..+++.-
T Consensus 419 i~LWDl~---e~~l--------v~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll 475 (519)
T KOG0293|consen 419 IHLWDLE---ENKL--------VRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLL 475 (519)
T ss_pred eEEeecc---hhhH--------HHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCcee
Confidence 8999885 3332 2344443222233345776666455555433 46888888887654
|
|
| >KOG2437 consensus Muskelin [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.00 E-value=0.34 Score=45.85 Aligned_cols=158 Identities=15% Similarity=0.144 Sum_probs=87.8
Q ss_pred eccccceeccCCCCCC--------CCceeEEEEeCCCCEEEEEEeecCCC---ceEEEEECCCCCccccccCC-CCcccc
Q 017381 127 NLVTLSSRTIDFPTYP--------FDFELLTLVSTPSGYKIFMLFAKSFP---NYAFVYDSTDQSWSKFDIDG-FPSMIL 194 (372)
Q Consensus 127 NP~t~~~~~lP~~~~~--------~~~~~~~~~~~~~~ykvv~~~~~~~~---~~~~vy~s~~~~W~~~~~~~-~p~~~~ 194 (372)
-|.+-.|.++|+-... -.+.++-++-...+-.|+..||-.+. ...++|.-+.+.|....+.. .|.
T Consensus 235 ~ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG--- 311 (723)
T KOG2437|consen 235 QEYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTEGPG--- 311 (723)
T ss_pred ccccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCCCCc---
Confidence 4667778888765421 12233334433334467777764432 37889999999998886311 232
Q ss_pred ccCCCcccEEECC--EEEEeee-----------CCcEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCe
Q 017381 195 SQSSHQEGVFYKG--SLYFTTP-----------EPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNK 261 (372)
Q Consensus 195 ~~~~~~~~v~~~G--~~y~~~~-----------~~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~ 261 (372)
.+..+..|.--. ++|.++. ....+..||..++.|..+....+ -.=-|...-.+++++. .-.|-
T Consensus 312 -~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~--~dGGP~~vfDHqM~Vd-~~k~~ 387 (723)
T KOG2437|consen 312 -ARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTA--ADGGPKLVFDHQMCVD-SEKHM 387 (723)
T ss_pred -chhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEeccccc--ccCCcceeecceeeEe-cCcce
Confidence 223455555443 8888763 12358999999999988642200 0002333334566541 13455
Q ss_pred EEEEEeeecCCcc-ceEEEEEEcCCCC-EEEE
Q 017381 262 LYLIGGVGRNGIS-TTMKLWELGCGGN-WIEV 291 (372)
Q Consensus 262 L~vv~~~~~~~~~-~~i~vw~l~~~~~-W~~v 291 (372)
|||.||+.-...+ ..-.+|.++..+. |...
T Consensus 388 iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l 419 (723)
T KOG2437|consen 388 IYVFGGRILTCNEPQFSGLYAFNCQCQTWKLL 419 (723)
T ss_pred EEEecCeeccCCCccccceEEEecCCccHHHH
Confidence 9999985422221 1224566665555 7754
|
|
| >smart00284 OLF Olfactomedin-like domains | Back alignment and domain information |
|---|
Probab=91.99 E-value=6.3 Score=34.68 Aligned_cols=132 Identities=19% Similarity=0.232 Sum_probs=77.1
Q ss_pred CcccEEECCEEEEeeeCCcEEEEEecCCCeeecc-CCCCccc-cccCCC---cccccceeeeccCCCeEEEEEeeecCCc
Q 017381 199 HQEGVFYKGSLYFTTPEPFSIVRFDLENGIWETP-NDANDHM-TMMLPH---ELTFFRLVNDGEESNKLYLIGGVGRNGI 273 (372)
Q Consensus 199 ~~~~v~~~G~~y~~~~~~~~i~~yD~~~~~w~~i-~~p~~~~-~~~~p~---~~~~~~lv~e~~~~g~L~vv~~~~~~~~ 273 (372)
....|+.+|.+|+.......|+.||+.+++-... ..|+.-. +. .|- +.....+.+ -+.-|.+|..... .
T Consensus 76 GtG~VVYngslYY~~~~s~~iiKydL~t~~v~~~~~Lp~a~y~~~-~~Y~~~~~sdiDlAv---DE~GLWvIYat~~--~ 149 (255)
T smart00284 76 GTGVVVYNGSLYFNKFNSHDICRFDLTTETYQKEPLLNGAGYNNR-FPYAWGGFSDIDLAV---DENGLWVIYATEQ--N 149 (255)
T ss_pred cccEEEECceEEEEecCCccEEEEECCCCcEEEEEecCccccccc-cccccCCCccEEEEE---cCCceEEEEeccC--C
Confidence 3456889999999876666799999999877532 2221000 00 111 122345654 4677999977432 2
Q ss_pred cceEEEEEEcCCC-----CEEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEee-c---CCeEEEEECCCCceEE
Q 017381 274 STTMKLWELGCGG-----NWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCY-T---WPEILYYNVARRTWHW 344 (372)
Q Consensus 274 ~~~i~vw~l~~~~-----~W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~---~~~v~~yd~~~~~w~~ 344 (372)
...|-|=+||+.+ +|.. ..+.. ..-.++...|.+|+... . .....+||..+++-.
T Consensus 150 ~g~ivvSkLnp~tL~ve~tW~T--~~~k~-------------sa~naFmvCGvLY~~~s~~~~~~~I~yayDt~t~~~~- 213 (255)
T smart00284 150 AGKIVISKLNPATLTIENTWIT--TYNKR-------------SASNAFMICGILYVTRSLGSKGEKVFYAYDTNTGKEG- 213 (255)
T ss_pred CCCEEEEeeCcccceEEEEEEc--CCCcc-------------cccccEEEeeEEEEEccCCCCCcEEEEEEECCCCccc-
Confidence 3567777777653 2764 22211 11235556777888752 1 123589999998744
Q ss_pred CCCCCCCC
Q 017381 345 LPSCPSLP 352 (372)
Q Consensus 345 v~~~~~~~ 352 (372)
-+..||+.
T Consensus 214 ~~~i~f~n 221 (255)
T smart00284 214 HLDIPFEN 221 (255)
T ss_pred eeeeeecc
Confidence 35566643
|
|
| >PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function | Back alignment and domain information |
|---|
Probab=91.98 E-value=4.1 Score=37.78 Aligned_cols=131 Identities=12% Similarity=0.093 Sum_probs=71.3
Q ss_pred CCEEEEeeeCCcEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeEEEEEeeecCCcc-----ceEEEE
Q 017381 206 KGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGIS-----TTMKLW 280 (372)
Q Consensus 206 ~G~~y~~~~~~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~~~~-----~~i~vw 280 (372)
+.+|..+.... ..+.||.++...... |. ++......-.+ . .+|+||++......... ..+++.
T Consensus 76 gskIv~~d~~~-~t~vyDt~t~av~~~--P~------l~~pk~~pisv-~--VG~~LY~m~~~~~~~~~~~~~~~~FE~l 143 (342)
T PF07893_consen 76 GSKIVAVDQSG-RTLVYDTDTRAVATG--PR------LHSPKRCPISV-S--VGDKLYAMDRSPFPEPAGRPDFPCFEAL 143 (342)
T ss_pred CCeEEEEcCCC-CeEEEECCCCeEecc--CC------CCCCCcceEEE-E--eCCeEEEeeccCccccccCccceeEEEe
Confidence 55776665443 388999998877753 21 33322233333 3 68999999875422111 156666
Q ss_pred EEcC-------CCC--EEEEEecChHHHHHhhhhccCCC-ceEEEEeeCCEEEEEeecC-CeEEEEECCCCceEECC--C
Q 017381 281 ELGC-------GGN--WIEVERVPEMMCRKFMSVCYHNY-DHVYCFWHQGMICVCCYTW-PEILYYNVARRTWHWLP--S 347 (372)
Q Consensus 281 ~l~~-------~~~--W~~v~~lp~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~-~~v~~yd~~~~~w~~v~--~ 347 (372)
.++. ... |.. +|...+..... +... ...+++.+|..|++..... ..-++||..+++|+++- .
T Consensus 144 ~~~~~~~~~~~~~~w~W~~---LP~PPf~~~~~--~~~~~i~sYavv~g~~I~vS~~~~~~GTysfDt~~~~W~~~GdW~ 218 (342)
T PF07893_consen 144 VYRPPPDDPSPEESWSWRS---LPPPPFVRDRR--YSDYRITSYAVVDGRTIFVSVNGRRWGTYSFDTESHEWRKHGDWM 218 (342)
T ss_pred ccccccccccCCCcceEEc---CCCCCccccCC--cccceEEEEEEecCCeEEEEecCCceEEEEEEcCCcceeecccee
Confidence 5441 122 654 55443321111 0000 1123333466777755322 25799999999999985 5
Q ss_pred CCCCCC
Q 017381 348 CPSLPH 353 (372)
Q Consensus 348 ~~~~~~ 353 (372)
+||.+.
T Consensus 219 LPF~G~ 224 (342)
T PF07893_consen 219 LPFHGQ 224 (342)
T ss_pred cCcCCc
Confidence 666443
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=91.82 E-value=10 Score=34.74 Aligned_cols=192 Identities=10% Similarity=0.029 Sum_probs=87.7
Q ss_pred CCceEEEEeccc-cceeccCCCCCCCCceeEEEEeCCCCEEEEEEeecCCCceEEEEECC-CCCccccccCCCCcccccc
Q 017381 119 SSSSFLVCNLVT-LSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDST-DQSWSKFDIDGFPSMILSQ 196 (372)
Q Consensus 119 ~~~~~~v~NP~t-~~~~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~-~~~W~~~~~~~~p~~~~~~ 196 (372)
.++.+.+|+..+ ++...+...+.......+++.+.+. .+++... ....+.+|+.. ++++.... ..+. ..
T Consensus 10 ~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~--~lyv~~~--~~~~i~~~~~~~~g~l~~~~--~~~~---~~ 80 (330)
T PRK11028 10 ESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKR--HLYVGVR--PEFRVLSYRIADDGALTFAA--ESPL---PG 80 (330)
T ss_pred CCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCC--EEEEEEC--CCCcEEEEEECCCCceEEee--eecC---CC
Confidence 346677777653 4433333222111122344433222 3344322 23566777775 56676554 2221 11
Q ss_pred CCCcccEEE--CCE-EEEeeeCCcEEEEEecCCCe-e-eccCCCCccccccCCCcccccceeeeccCCCeEEEEEeeecC
Q 017381 197 SSHQEGVFY--KGS-LYFTTPEPFSIVRFDLENGI-W-ETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRN 271 (372)
Q Consensus 197 ~~~~~~v~~--~G~-~y~~~~~~~~i~~yD~~~~~-w-~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~ 271 (372)
....+.+ +|+ +|........+.+||+.++. . ..+. . .+.....+.+... -+|+..++..
T Consensus 81 --~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~-~-------~~~~~~~~~~~~~--p~g~~l~v~~---- 144 (330)
T PRK11028 81 --SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQ-I-------IEGLEGCHSANID--PDNRTLWVPC---- 144 (330)
T ss_pred --CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCcee-e-------ccCCCcccEeEeC--CCCCEEEEee----
Confidence 1123333 464 55444445678889986431 1 1111 0 1111111222112 4665444433
Q ss_pred CccceEEEEEEcCCCCEEEE----EecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeecCCeEEEEECC--CCceEEC
Q 017381 272 GISTTMKLWELGCGGNWIEV----ERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVA--RRTWHWL 345 (372)
Q Consensus 272 ~~~~~i~vw~l~~~~~W~~v----~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~yd~~--~~~w~~v 345 (372)
.....+.||.++..+.-... .+++.. .....+..-.++..+|+.....+.|.+||+. +++++.+
T Consensus 145 ~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g----------~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~ 214 (330)
T PRK11028 145 LKEDRIRLFTLSDDGHLVAQEPAEVTTVEG----------AGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECV 214 (330)
T ss_pred CCCCEEEEEEECCCCcccccCCCceecCCC----------CCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEE
Confidence 13468999998753433211 111110 0011121223556788887667889999997 4565443
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=91.34 E-value=8.7 Score=33.02 Aligned_cols=188 Identities=14% Similarity=0.185 Sum_probs=96.5
Q ss_pred cCcEEEEecCCCceEEEEeccccceeccCCCCCCCCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCC--ccc-cc
Q 017381 109 SKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQS--WSK-FD 185 (372)
Q Consensus 109 ~~Gll~~~~~~~~~~~v~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~--W~~-~~ 185 (372)
.+|.+++.. ..+.++.+|+.|++...--.++.+..... .... -++++... ...+..+|..+++ |+. ..
T Consensus 35 ~~~~v~~~~-~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~----~~v~v~~~---~~~l~~~d~~tG~~~W~~~~~ 105 (238)
T PF13360_consen 35 DGGRVYVAS-GDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDG----GRVYVGTS---DGSLYALDAKTGKVLWSIYLT 105 (238)
T ss_dssp ETTEEEEEE-TTSEEEEEETTTSEEEEEEECSSCGGSGE-EEET----TEEEEEET---TSEEEEEETTTSCEEEEEEE-
T ss_pred eCCEEEEEc-CCCEEEEEECCCCCEEEEeecccccccee-eecc----cccccccc---eeeeEecccCCcceeeeeccc
Confidence 667666653 35889999999998443322222211111 1111 14554442 2378888877764 984 43
Q ss_pred cCCCCccccccCCCcccEEECCEEEEeeeCCcEEEEEecCCCe--eeccCCCCccccccCCCccc--------ccceeee
Q 017381 186 IDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENGI--WETPNDANDHMTMMLPHELT--------FFRLVND 255 (372)
Q Consensus 186 ~~~~p~~~~~~~~~~~~v~~~G~~y~~~~~~~~i~~yD~~~~~--w~~i~~p~~~~~~~~p~~~~--------~~~lv~e 255 (372)
..+. .........++.++.+|.... ...+.++|+++.+ |.... . .|.... ...++.
T Consensus 106 --~~~~--~~~~~~~~~~~~~~~~~~~~~-~g~l~~~d~~tG~~~w~~~~-~-------~~~~~~~~~~~~~~~~~~~~- 171 (238)
T PF13360_consen 106 --SSPP--AGVRSSSSPAVDGDRLYVGTS-SGKLVALDPKTGKLLWKYPV-G-------EPRGSSPISSFSDINGSPVI- 171 (238)
T ss_dssp --SSCT--CSTB--SEEEEETTEEEEEET-CSEEEEEETTTTEEEEEEES-S-------TT-SS--EEEETTEEEEEEC-
T ss_pred --cccc--cccccccCceEecCEEEEEec-cCcEEEEecCCCcEEEEeec-C-------CCCCCcceeeecccccceEE-
Confidence 2222 111112233444666765553 4469999988664 55421 2 222111 123332
Q ss_pred ccCCCeEEEEEeeecCCccceEEEEEEcCCCC-EEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeecCCeEEE
Q 017381 256 GEESNKLYLIGGVGRNGISTTMKLWELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILY 334 (372)
Q Consensus 256 ~~~~g~L~vv~~~~~~~~~~~i~vw~l~~~~~-W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~ 334 (372)
.+|.+++.... + ..+.+ .+..... |+.. +.. ........++.+|+.. ..+.+.+
T Consensus 172 --~~~~v~~~~~~---g--~~~~~-d~~tg~~~w~~~--~~~--------------~~~~~~~~~~~l~~~~-~~~~l~~ 226 (238)
T PF13360_consen 172 --SDGRVYVSSGD---G--RVVAV-DLATGEKLWSKP--ISG--------------IYSLPSVDGGTLYVTS-SDGRLYA 226 (238)
T ss_dssp --CTTEEEEECCT---S--SEEEE-ETTTTEEEEEEC--SS---------------ECECEECCCTEEEEEE-TTTEEEE
T ss_pred --ECCEEEEEcCC---C--eEEEE-ECCCCCEEEEec--CCC--------------ccCCceeeCCEEEEEe-CCCEEEE
Confidence 46777776541 1 12333 4432222 8422 210 0011345788888887 5688999
Q ss_pred EECCCCceEE
Q 017381 335 YNVARRTWHW 344 (372)
Q Consensus 335 yd~~~~~w~~ 344 (372)
+|+++++-.+
T Consensus 227 ~d~~tG~~~W 236 (238)
T PF13360_consen 227 LDLKTGKVVW 236 (238)
T ss_dssp EETTTTEEEE
T ss_pred EECCCCCEEe
Confidence 9999996443
|
... |
| >PLN02772 guanylate kinase | Back alignment and domain information |
|---|
Probab=90.98 E-value=1.8 Score=40.57 Aligned_cols=77 Identities=13% Similarity=0.190 Sum_probs=49.2
Q ss_pred CCcccEEECCEEEEeeeCC------cEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeEEEEEeeecC
Q 017381 198 SHQEGVFYKGSLYFTTPEP------FSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRN 271 (372)
Q Consensus 198 ~~~~~v~~~G~~y~~~~~~------~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~ 271 (372)
..++++.+++++|+.++.. ..+.+||..+.+|....+-|. .|..+..+..+.. -+++|+++....
T Consensus 26 ~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~-----~P~~r~GhSa~v~--~~~rilv~~~~~-- 96 (398)
T PLN02772 26 NRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGT-----GPKPCKGYSAVVL--NKDRILVIKKGS-- 96 (398)
T ss_pred CcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCC-----CCCCCCcceEEEE--CCceEEEEeCCC--
Confidence 3567889999999998621 368999999999987543221 3444433322211 489999998632
Q ss_pred CccceEEEEEEcCC
Q 017381 272 GISTTMKLWELGCG 285 (372)
Q Consensus 272 ~~~~~i~vw~l~~~ 285 (372)
...-.+|-|.-+
T Consensus 97 --~~~~~~w~l~~~ 108 (398)
T PLN02772 97 --APDDSIWFLEVD 108 (398)
T ss_pred --CCccceEEEEcC
Confidence 122467777433
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=89.93 E-value=12 Score=32.19 Aligned_cols=133 Identities=16% Similarity=0.245 Sum_probs=71.4
Q ss_pred eEEEEECCCCC--ccccccCCCCccccccCCCcccEEECCEEEEeeeCCcEEEEEecCCC--eeeccCCCCccccccCCC
Q 017381 170 YAFVYDSTDQS--WSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENG--IWETPNDANDHMTMMLPH 245 (372)
Q Consensus 170 ~~~vy~s~~~~--W~~~~~~~~p~~~~~~~~~~~~v~~~G~~y~~~~~~~~i~~yD~~~~--~w~~i~~p~~~~~~~~p~ 245 (372)
.+..+|..+++ |+..- . +. .. ......+.-+|.+|... ....+.++|..+. .|+.- ++.
T Consensus 4 ~l~~~d~~tG~~~W~~~~--~-~~--~~-~~~~~~~~~~~~v~~~~-~~~~l~~~d~~tG~~~W~~~----------~~~ 66 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYDL--G-PG--IG-GPVATAVPDGGRVYVAS-GDGNLYALDAKTGKVLWRFD----------LPG 66 (238)
T ss_dssp EEEEEETTTTEEEEEEEC--S-SS--CS-SEEETEEEETTEEEEEE-TTSEEEEEETTTSEEEEEEE----------CSS
T ss_pred EEEEEECCCCCEEEEEEC--C-CC--CC-CccceEEEeCCEEEEEc-CCCEEEEEECCCCCEEEEee----------ccc
Confidence 46677776654 76532 0 00 00 01111344778888764 4457999998765 45542 323
Q ss_pred cccccceeeeccCCCeEEEEEeeecCCccceEEEEEEc-CCCC--EEE-EEecChHHHHHhhhhccCCCceEEEEeeCCE
Q 017381 246 ELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELG-CGGN--WIE-VERVPEMMCRKFMSVCYHNYDHVYCFWHQGM 321 (372)
Q Consensus 246 ~~~~~~lv~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~-~~~~--W~~-v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (372)
......++ .++++++... .. .++.+| ..++ |+. ...-+... . .........++.
T Consensus 67 ~~~~~~~~----~~~~v~v~~~------~~--~l~~~d~~tG~~~W~~~~~~~~~~~---~-------~~~~~~~~~~~~ 124 (238)
T PF13360_consen 67 PISGAPVV----DGGRVYVGTS------DG--SLYALDAKTGKVLWSIYLTSSPPAG---V-------RSSSSPAVDGDR 124 (238)
T ss_dssp CGGSGEEE----ETTEEEEEET------TS--EEEEEETTTSCEEEEEEE-SSCTCS---T-------B--SEEEEETTE
T ss_pred cccceeee----cccccccccc------ee--eeEecccCCcceeeeeccccccccc---c-------ccccCceEecCE
Confidence 22222343 5889888763 12 566666 4455 984 43322111 0 011122234777
Q ss_pred EEEEeecCCeEEEEECCCCce
Q 017381 322 ICVCCYTWPEILYYNVARRTW 342 (372)
Q Consensus 322 i~~~~~~~~~v~~yd~~~~~w 342 (372)
+++.. ..+.++++|+++++-
T Consensus 125 ~~~~~-~~g~l~~~d~~tG~~ 144 (238)
T PF13360_consen 125 LYVGT-SSGKLVALDPKTGKL 144 (238)
T ss_dssp EEEEE-TCSEEEEEETTTTEE
T ss_pred EEEEe-ccCcEEEEecCCCcE
Confidence 77765 367899999999855
|
... |
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=88.20 E-value=20 Score=32.71 Aligned_cols=216 Identities=10% Similarity=0.050 Sum_probs=104.2
Q ss_pred EEEecCc-EEEEecCCCceEEEEeccccc-e-eccCCCCCCCCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCC-CC
Q 017381 105 LLSSSKG-LLCFSLPSSSSFLVCNLVTLS-S-RTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTD-QS 180 (372)
Q Consensus 105 ~~~s~~G-ll~~~~~~~~~~~v~NP~t~~-~-~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~-~~ 180 (372)
+..+.+| .++......+.+.+|+..+.. . ..+...+.......+++.+.+ . .+++.. .....+.+||..+ +.
T Consensus 85 i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g-~-~l~v~~--~~~~~v~v~d~~~~g~ 160 (330)
T PRK11028 85 ISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDN-R-TLWVPC--LKEDRIRLFTLSDDGH 160 (330)
T ss_pred EEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCC-C-EEEEee--CCCCEEEEEEECCCCc
Confidence 3444455 566555446788888875321 1 111111111111233444332 2 333322 2345789999876 32
Q ss_pred cccccc--CCCCccccccCCCcccEEE-CC-EEEEeeeCCcEEEEEecC--CCeeeccCCCCccccccCCCccc---c-c
Q 017381 181 WSKFDI--DGFPSMILSQSSHQEGVFY-KG-SLYFTTPEPFSIVRFDLE--NGIWETPNDANDHMTMMLPHELT---F-F 250 (372)
Q Consensus 181 W~~~~~--~~~p~~~~~~~~~~~~v~~-~G-~~y~~~~~~~~i~~yD~~--~~~w~~i~~p~~~~~~~~p~~~~---~-~ 250 (372)
-..... ...+.+. .....++. +| .+|........+.+||+. +.+++.+..-. . +|.... . .
T Consensus 161 l~~~~~~~~~~~~g~----~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~----~-~p~~~~~~~~~~ 231 (330)
T PRK11028 161 LVAQEPAEVTTVEGA----GPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLD----M-MPADFSDTRWAA 231 (330)
T ss_pred ccccCCCceecCCCC----CCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEe----c-CCCcCCCCccce
Confidence 221100 0111110 11112222 44 456655546678889886 33443321000 0 232211 1 1
Q ss_pred ceeeeccCCCe-EEEEEeeecCCccceEEEEEEcCCCC-EEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeec
Q 017381 251 RLVNDGEESNK-LYLIGGVGRNGISTTMKLWELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYT 328 (372)
Q Consensus 251 ~lv~e~~~~g~-L~vv~~~~~~~~~~~i~vw~l~~~~~-W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 328 (372)
.+... -+|+ ||+... ....+.||.++.++. ++.+..++.... ...+..-..+..+|+....
T Consensus 232 ~i~~~--pdg~~lyv~~~-----~~~~I~v~~i~~~~~~~~~~~~~~~~~~----------p~~~~~~~dg~~l~va~~~ 294 (330)
T PRK11028 232 DIHIT--PDGRHLYACDR-----TASLISVFSVSEDGSVLSFEGHQPTETQ----------PRGFNIDHSGKYLIAAGQK 294 (330)
T ss_pred eEEEC--CCCCEEEEecC-----CCCeEEEEEEeCCCCeEEEeEEEecccc----------CCceEECCCCCEEEEEEcc
Confidence 12211 4666 555422 246899999977654 877777653310 1122222456688887766
Q ss_pred CCeEEEEEC--CCCceEECCCCCC
Q 017381 329 WPEILYYNV--ARRTWHWLPSCPS 350 (372)
Q Consensus 329 ~~~v~~yd~--~~~~w~~v~~~~~ 350 (372)
.+.|.+|+. +++.+..+...+.
T Consensus 295 ~~~v~v~~~~~~~g~l~~~~~~~~ 318 (330)
T PRK11028 295 SHHISVYEIDGETGLLTELGRYAV 318 (330)
T ss_pred CCcEEEEEEcCCCCcEEEcccccc
Confidence 677888865 5678887765554
|
|
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=87.84 E-value=4.2 Score=35.59 Aligned_cols=88 Identities=8% Similarity=0.035 Sum_probs=54.1
Q ss_pred ceEEEEeccccceeccCCCCCCCCceeEEEEeCCCCEEEEEEeecCC-CceEEEEECCC----CCccccccCCCCccccc
Q 017381 121 SSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSF-PNYAFVYDSTD----QSWSKFDIDGFPSMILS 195 (372)
Q Consensus 121 ~~~~v~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~~-~~~~~vy~s~~----~~W~~~~~~~~p~~~~~ 195 (372)
..-.+|||.|++++.++.....++... ++.+. -+++.+||... ...+.+|++.+ ..|.+... .|.. +
T Consensus 46 a~s~~yD~~tn~~rpl~v~td~FCSgg-~~L~d---G~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~-~m~~---~ 117 (243)
T PF07250_consen 46 AHSVEYDPNTNTFRPLTVQTDTFCSGG-AFLPD---GRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPN-DMQS---G 117 (243)
T ss_pred EEEEEEecCCCcEEeccCCCCCcccCc-CCCCC---CCEEEeCCCCccccceEEEecCCCCCCCCceECcc-cccC---C
Confidence 456889999999998875433333222 12122 27888887643 34778888765 67877651 2322 2
Q ss_pred cCCCcccEEECCEEEEeeeCC
Q 017381 196 QSSHQEGVFYKGSLYFTTPEP 216 (372)
Q Consensus 196 ~~~~~~~v~~~G~~y~~~~~~ 216 (372)
+.+....+.-||++..+++..
T Consensus 118 RWYpT~~~L~DG~vlIvGG~~ 138 (243)
T PF07250_consen 118 RWYPTATTLPDGRVLIVGGSN 138 (243)
T ss_pred CccccceECCCCCEEEEeCcC
Confidence 223344445589999998754
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.73 E-value=0.34 Score=45.08 Aligned_cols=39 Identities=33% Similarity=0.494 Sum_probs=34.6
Q ss_pred hhcCCCHHHHHHHHccCCchhhhHHhhchhhhhhcccCh
Q 017381 12 IWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSP 50 (372)
Q Consensus 12 ~~~~LP~dll~~IL~rLp~~~l~r~r~Vck~W~~~i~~~ 50 (372)
+--.||.|++.+|++.|..+++.|++.+|+.|+.+..+.
T Consensus 71 ~~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~ 109 (483)
T KOG4341|consen 71 ISRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDG 109 (483)
T ss_pred ccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcc
Confidence 334699999999999999999999999999999987653
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.98 E-value=12 Score=35.53 Aligned_cols=175 Identities=15% Similarity=0.148 Sum_probs=90.7
Q ss_pred eccccceeccCCCCCCC---CceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCCccc-cccCCCCccccccCCCccc
Q 017381 127 NLVTLSSRTIDFPTYPF---DFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSK-FDIDGFPSMILSQSSHQEG 202 (372)
Q Consensus 127 NP~t~~~~~lP~~~~~~---~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~-~~~~~~p~~~~~~~~~~~~ 202 (372)
+|.++-|+....++... ....+.+.+ ...|.+++.++ ..+++|++.+.+=+. .. .+- ....+
T Consensus 8 t~e~~~w~~~~~~~~~ke~~~vssl~fsp-~~P~d~aVt~S----~rvqly~~~~~~~~k~~s--rFk-------~~v~s 73 (487)
T KOG0310|consen 8 TPEIRYWRQETFPPVHKEHNSVSSLCFSP-KHPYDFAVTSS----VRVQLYSSVTRSVRKTFS--RFK-------DVVYS 73 (487)
T ss_pred CccchhhhhhcccccccccCcceeEecCC-CCCCceEEecc----cEEEEEecchhhhhhhHH--hhc-------cceeE
Confidence 45566676664443221 122333432 34456666554 689999998753322 11 110 11112
Q ss_pred E--EECCEEEEeeeCCcEEEEEecCCCee-eccCCCCccccccCCCcccccceeeeccCCCeEEEEEeeecCCccceEEE
Q 017381 203 V--FYKGSLYFTTPEPFSIVRFDLENGIW-ETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKL 279 (372)
Q Consensus 203 v--~~~G~~y~~~~~~~~i~~yD~~~~~w-~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~~~~~~i~v 279 (372)
+ -.+|++...+.+...+-+||+++..- ..+.... .|-... ..- . .++.+++.+. ....+.+
T Consensus 74 ~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~------apv~~~--~f~-~--~d~t~l~s~s-----Dd~v~k~ 137 (487)
T KOG0310|consen 74 VDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQ------APVHVT--KFS-P--QDNTMLVSGS-----DDKVVKY 137 (487)
T ss_pred EEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhcc------CceeEE--Eec-c--cCCeEEEecC-----CCceEEE
Confidence 2 23699998887766799999665211 1111000 222221 111 1 4677766654 2356788
Q ss_pred EEEcCCCCEEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeecCCeEEEEECCCC-ceE
Q 017381 280 WELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARR-TWH 343 (372)
Q Consensus 280 w~l~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~yd~~~~-~w~ 343 (372)
|.++... + ...+... .++.+ ...+....+.|++.+.+.+.|-.||.++. .|.
T Consensus 138 ~d~s~a~--v-~~~l~~h--tDYVR-------~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v 190 (487)
T KOG0310|consen 138 WDLSTAY--V-QAELSGH--TDYVR-------CGDISPANDHIVVTGSYDGKVRLWDTRSLTSRV 190 (487)
T ss_pred EEcCCcE--E-EEEecCC--cceeE-------eeccccCCCeEEEecCCCceEEEEEeccCCcee
Confidence 8775332 3 2222110 11211 12222356678888888889999999998 443
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=85.23 E-value=33 Score=32.08 Aligned_cols=186 Identities=15% Similarity=0.195 Sum_probs=94.2
Q ss_pred ecCcEEEEecCCCceEEEEeccccceeccCCCCCC-CCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCC--cccc
Q 017381 108 SSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYP-FDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQS--WSKF 184 (372)
Q Consensus 108 s~~Gll~~~~~~~~~~~v~NP~t~~~~~lP~~~~~-~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~--W~~~ 184 (372)
..++.+++.. ..+.++.+|+.|++...--..+.. ...+. +. +. ++++.. ....+..+|.++++ |+..
T Consensus 103 v~~~~v~v~~-~~g~l~ald~~tG~~~W~~~~~~~~~~~p~--v~---~~-~v~v~~---~~g~l~a~d~~tG~~~W~~~ 172 (377)
T TIGR03300 103 ADGGLVFVGT-EKGEVIALDAEDGKELWRAKLSSEVLSPPL--VA---NG-LVVVRT---NDGRLTALDAATGERLWTYS 172 (377)
T ss_pred EcCCEEEEEc-CCCEEEEEECCCCcEeeeeccCceeecCCE--EE---CC-EEEEEC---CCCeEEEEEcCCCceeeEEc
Confidence 3466666544 246888899999883321111111 00011 11 11 444432 23567888887764 8755
Q ss_pred ccCCCCccccccCCCcccEEECCEEEEeeeCCcEEEEEecCCC--eeeccCCCCccccccCCCc---------cccccee
Q 017381 185 DIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENG--IWETPNDANDHMTMMLPHE---------LTFFRLV 253 (372)
Q Consensus 185 ~~~~~p~~~~~~~~~~~~v~~~G~~y~~~~~~~~i~~yD~~~~--~w~~i~~p~~~~~~~~p~~---------~~~~~lv 253 (372)
. ..+. ........++..+|.+|+-.. ...+.++|+.+. .|+.-. . .|.. .....++
T Consensus 173 ~--~~~~--~~~~~~~sp~~~~~~v~~~~~-~g~v~ald~~tG~~~W~~~~-~-------~~~g~~~~~~~~~~~~~p~~ 239 (377)
T TIGR03300 173 R--VTPA--LTLRGSASPVIADGGVLVGFA-GGKLVALDLQTGQPLWEQRV-A-------LPKGRTELERLVDVDGDPVV 239 (377)
T ss_pred c--CCCc--eeecCCCCCEEECCEEEEECC-CCEEEEEEccCCCEeeeecc-c-------cCCCCCchhhhhccCCccEE
Confidence 4 2221 111123446777887765433 346899998765 465311 1 1111 1112233
Q ss_pred eeccCCCeEEEEEeeecCCccceEEEEEEcCCCC-EEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeecCCeE
Q 017381 254 NDGEESNKLYLIGGVGRNGISTTMKLWELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEI 332 (372)
Q Consensus 254 ~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~~~~~-W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v 332 (372)
.++.+|+.... ..+..+..+.... |..-. + .... .+..++.||+.. ..+.+
T Consensus 240 ----~~~~vy~~~~~------g~l~a~d~~tG~~~W~~~~--~-------------~~~~--p~~~~~~vyv~~-~~G~l 291 (377)
T TIGR03300 240 ----DGGQVYAVSYQ------GRVAALDLRSGRVLWKRDA--S-------------SYQG--PAVDDNRLYVTD-ADGVV 291 (377)
T ss_pred ----ECCEEEEEEcC------CEEEEEECCCCcEEEeecc--C-------------CccC--ceEeCCEEEEEC-CCCeE
Confidence 57788876541 2344554432222 86531 0 0011 113467788865 34679
Q ss_pred EEEECCCCc--eEE
Q 017381 333 LYYNVARRT--WHW 344 (372)
Q Consensus 333 ~~yd~~~~~--w~~ 344 (372)
.++|..+++ |+.
T Consensus 292 ~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 292 VALDRRSGSELWKN 305 (377)
T ss_pred EEEECCCCcEEEcc
Confidence 999999874 543
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=83.53 E-value=40 Score=31.78 Aligned_cols=132 Identities=14% Similarity=0.254 Sum_probs=69.6
Q ss_pred ceEEEEECCCCC--ccccccCCCCccc--cc--cCCCcccEEECCEEEEeeeCCcEEEEEecCCC--eeeccCCCCcccc
Q 017381 169 NYAFVYDSTDQS--WSKFDIDGFPSMI--LS--QSSHQEGVFYKGSLYFTTPEPFSIVRFDLENG--IWETPNDANDHMT 240 (372)
Q Consensus 169 ~~~~vy~s~~~~--W~~~~~~~~p~~~--~~--~~~~~~~v~~~G~~y~~~~~~~~i~~yD~~~~--~w~~i~~p~~~~~ 240 (372)
..+..++..+++ |+... ..|... .. ......++..+|.+|..+.+. .+.++|+++. .|+.-
T Consensus 215 g~v~a~d~~~G~~~W~~~~--~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g-~l~ald~~tG~~~W~~~-------- 283 (394)
T PRK11138 215 GRVSAVLMEQGQLIWQQRI--SQPTGATEIDRLVDVDTTPVVVGGVVYALAYNG-NLVALDLRSGQIVWKRE-------- 283 (394)
T ss_pred CEEEEEEccCChhhheecc--ccCCCccchhcccccCCCcEEECCEEEEEEcCC-eEEEEECCCCCEEEeec--------
Confidence 456667776654 76432 112100 00 011245778899999876543 6999999865 46642
Q ss_pred ccCCCcccccceeeeccCCCeEEEEEeeecCCccceEEEEEEcCC-CC--EEEEEecChHHHHHhhhhccCCCceEEEEe
Q 017381 241 MMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCG-GN--WIEVERVPEMMCRKFMSVCYHNYDHVYCFW 317 (372)
Q Consensus 241 ~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~~~-~~--W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~ 317 (372)
.... ..++. .+|+||+.... .. ++.++.. ++ |..-. +.... .. ... .
T Consensus 284 --~~~~---~~~~~---~~~~vy~~~~~------g~--l~ald~~tG~~~W~~~~-~~~~~-----------~~-sp~-v 333 (394)
T PRK11138 284 --YGSV---NDFAV---DGGRIYLVDQN------DR--VYALDTRGGVELWSQSD-LLHRL-----------LT-APV-L 333 (394)
T ss_pred --CCCc---cCcEE---ECCEEEEEcCC------Ce--EEEEECCCCcEEEcccc-cCCCc-----------cc-CCE-E
Confidence 2111 12332 57888887641 22 4444332 22 86321 11000 01 111 2
Q ss_pred eCCEEEEEeecCCeEEEEECCCCce
Q 017381 318 HQGMICVCCYTWPEILYYNVARRTW 342 (372)
Q Consensus 318 ~~~~i~~~~~~~~~v~~yd~~~~~w 342 (372)
.++.||+.. ..+.+.+.|.++++-
T Consensus 334 ~~g~l~v~~-~~G~l~~ld~~tG~~ 357 (394)
T PRK11138 334 YNGYLVVGD-SEGYLHWINREDGRF 357 (394)
T ss_pred ECCEEEEEe-CCCEEEEEECCCCCE
Confidence 477788765 346789999999854
|
|
| >PF13854 Kelch_5: Kelch motif | Back alignment and domain information |
|---|
Probab=83.38 E-value=2.2 Score=25.83 Aligned_cols=38 Identities=26% Similarity=0.322 Sum_probs=23.1
Q ss_pred CCcccccceeeeccCCCeEEEEEeeecCCccceEEEEEEcC
Q 017381 244 PHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGC 284 (372)
Q Consensus 244 p~~~~~~~lv~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~~ 284 (372)
|..+..+..+. .+++||+.+|.........-++|.++-
T Consensus 2 P~~R~~hs~~~---~~~~iyi~GG~~~~~~~~~~d~~~l~l 39 (42)
T PF13854_consen 2 PSPRYGHSAVV---VGNNIYIFGGYSGNNNSYSNDLYVLDL 39 (42)
T ss_pred CCCccceEEEE---ECCEEEEEcCccCCCCCEECcEEEEEC
Confidence 34444455553 789999999965211223447787764
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.55 E-value=42 Score=34.82 Aligned_cols=84 Identities=15% Similarity=0.267 Sum_probs=44.4
Q ss_pred CCCCCccccccCCCCccccccCCCcccEEECC--EEEEeeeCCcEEEEEecCCCeeeccCCCCccccccCCCccccccee
Q 017381 176 STDQSWSKFDIDGFPSMILSQSSHQEGVFYKG--SLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLV 253 (372)
Q Consensus 176 s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G--~~y~~~~~~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv 253 (372)
+++..|..-. +- .+....+++.+++ .+....++...|-++|+...+--.. ..+......++
T Consensus 236 netKaWEvDt---cr----gH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~t----------frrendRFW~l 298 (1202)
T KOG0292|consen 236 NETKAWEVDT---CR----GHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQT----------FRRENDRFWIL 298 (1202)
T ss_pred ccccceeehh---hh----cccCCcceEEecCccceeEecCCCccEEEEecccccceee----------eeccCCeEEEE
Confidence 3566776543 11 1122345677777 5555566777899999986543221 11111112333
Q ss_pred eeccCCCeEEEEEeeecCCccceEEEEEEc
Q 017381 254 NDGEESNKLYLIGGVGRNGISTTMKLWELG 283 (372)
Q Consensus 254 ~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~ 283 (372)
+. --...||..++ ...+.|++++
T Consensus 299 aa-hP~lNLfAAgH------DsGm~VFkle 321 (1202)
T KOG0292|consen 299 AA-HPELNLFAAGH------DSGMIVFKLE 321 (1202)
T ss_pred Ee-cCCcceeeeec------CCceEEEEEc
Confidence 21 01366777665 2467899885
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 4e-08
Identities = 15/48 (31%), Positives = 20/48 (41%)
Query: 5 RREMDPAIWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSF 52
R W LP++LL + S L LLK+ CK + L S
Sbjct: 1 RENFPGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 48
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 2e-07
Identities = 15/67 (22%), Positives = 22/67 (32%)
Query: 5 RREMDPAIWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSFLSKTKCSSSAFS 64
R W LP++LL + S L LLK+ CK + L S +
Sbjct: 1 RENFPGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLH 60
Query: 65 CFILLSH 71
+
Sbjct: 61 PDVTGRL 67
|
| >2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297 | Back alignment and structure |
|---|
Score = 48.8 bits (115), Expect = 1e-06
Identities = 15/89 (16%), Positives = 24/89 (26%), Gaps = 1/89 (1%)
Query: 3 PKRREMDPAIWSRLPEDLLDHVLSFLPPKMLLKL-RSTCKHFNSLLFSPSFLSKTKCSSS 61
+ + LPE LL VL+ LP L++ R C + L+
Sbjct: 41 EEEEAEAVEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQEG 100
Query: 62 AFSCFILLSHPQCYDQYPLYDSTHGTWRR 90
+ Q+ R
Sbjct: 101 LVPEGSADEERDHWQQFYFLSKRRRNLLR 129
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357 | Back alignment and structure |
|---|
Score = 46.5 bits (110), Expect = 7e-06
Identities = 24/216 (11%), Positives = 55/216 (25%), Gaps = 49/216 (22%)
Query: 170 YAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYF---------TTPEPFSIV 220
Y + D+ W+ + F G+LY + F+ V
Sbjct: 34 YKLDTQAKDKKWTAL-----AAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDV 88
Query: 221 -RFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKL 279
+++ + W P + K Y+ GGV +N + +
Sbjct: 89 HKYNPKTNSWVKLMS-------HAPMGMAGHVTFVHN---GKAYVTGGVNQNIFNGYFED 138
Query: 280 WELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVAR 339
G + ++++ K Y + ++ +
Sbjct: 139 LNEA-GKDSTAIDKINAHYFDKKAED-YFFNKFLLS-------------------FDPST 177
Query: 340 RTWHWLPSCPSLPHKWSCGFSLN---YLAAGASGSN 372
+ W + P + + +L G +
Sbjct: 178 QQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPG 213
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 9e-05
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 11 AIWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPS 51
+ +RLP D+ ++LSFL P L +L ST ++N + P
Sbjct: 3 STLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPI 43
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 372 | |||
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 99.9 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 99.89 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 99.88 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 99.87 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 99.87 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 99.87 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 99.79 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 99.79 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 99.79 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 99.78 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 99.77 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 99.76 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 99.75 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 99.74 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 99.63 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 99.59 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 99.48 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 99.32 | |
| 1fs1_A | 53 | SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L | 99.09 | |
| 2e31_A | 297 | FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui | 98.89 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 98.83 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 98.82 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 98.71 | |
| 3l2o_B | 312 | F-box only protein 4; small G protein fold, UBL co | 97.83 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 97.6 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 97.25 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 96.47 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 96.1 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 96.06 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 95.72 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 95.68 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 95.49 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 95.34 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 95.13 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 95.05 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 95.02 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 95.0 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 94.97 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 94.83 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 94.5 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 93.98 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 93.92 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 93.82 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 93.63 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 93.28 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 92.77 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 92.62 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 92.31 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 91.74 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 91.54 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 91.36 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 91.19 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 91.11 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 91.07 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 90.76 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 90.75 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 90.36 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 90.25 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 90.11 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 89.92 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 89.53 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 89.39 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 88.91 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 88.79 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 88.57 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 88.36 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 88.28 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 88.26 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 88.24 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 88.17 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 88.09 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 88.07 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 87.69 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 87.36 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 87.08 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 86.94 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 86.83 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 86.72 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 86.67 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 86.23 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 86.13 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 84.8 | |
| 2kwv_A | 48 | RAD30 homolog B, DNA polymerase IOTA; ubiquitin-bi | 84.43 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 84.28 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 84.07 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 83.98 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 83.52 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 82.86 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 82.48 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 82.1 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 81.84 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 81.74 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 81.68 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 81.39 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 81.35 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 81.3 |
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-21 Score=177.93 Aligned_cols=256 Identities=16% Similarity=0.098 Sum_probs=184.3
Q ss_pred ceEEEEeCCCCCCccccccCCCCCeeeecCCCCCCCCCceEEEEecCcEEEEecCC----CceEEEEeccccceeccCCC
Q 017381 64 SCFILLSHPQCYDQYPLYDSTHGTWRRLSLPYSLLLPSAATLLSSSKGLLCFSLPS----SSSFLVCNLVTLSSRTIDFP 139 (372)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~d~~~~~w~~l~~~~~~~~~~~~~~~~s~~Gll~~~~~~----~~~~~v~NP~t~~~~~lP~~ 139 (372)
..++++.+......+..||+..++|..++. +|..+..+.++..+|.|++.++. .+.+.+|||.+++|..++++
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~---~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~ 88 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRC---PFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGP 88 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCC---CSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECC
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCC---CCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCC
Confidence 346666554445567889999999998852 23344445555667766665542 35899999999999999998
Q ss_pred CCCCCceeEEEEeCCCCEEEEEEeecC----CCceEEEEECCCCCccccccCCCCccccccCCCcccEEECCEEEEeeeC
Q 017381 140 TYPFDFELLTLVSTPSGYKIFMLFAKS----FPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPE 215 (372)
Q Consensus 140 ~~~~~~~~~~~~~~~~~ykvv~~~~~~----~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~~y~~~~~ 215 (372)
+.++..+..+... -+|+++||.. ....+++||+.+++|+... .+|. .+..+..+.++|++|.+++.
T Consensus 89 p~~r~~~~~~~~~----~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~--~~p~----~r~~~~~~~~~~~iyv~GG~ 158 (306)
T 3ii7_A 89 PTPRDSLAACAAE----GKIYTSGGSEVGNSALYLFECYDTRTESWHTKP--SMLT----QRCSHGMVEANGLIYVCGGS 158 (306)
T ss_dssp SSCCBSCEEEEET----TEEEEECCBBTTBSCCCCEEEEETTTTEEEEEC--CCSS----CCBSCEEEEETTEEEEECCE
T ss_pred CccccceeEEEEC----CEEEEECCCCCCCcEeeeEEEEeCCCCceEeCC--CCcC----CcceeEEEEECCEEEEECCC
Confidence 8776655544432 2799998854 2358999999999999998 6665 23456678899999999752
Q ss_pred ---------CcEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeEEEEEeeecCCccceEEEEEEcCCC
Q 017381 216 ---------PFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGG 286 (372)
Q Consensus 216 ---------~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~~~~ 286 (372)
...+..||+.+++|+.+. + +|..+..+.++. .+++||++++.... ...-++|.+|..+
T Consensus 159 ~~~~~~~~~~~~~~~yd~~~~~W~~~~-~-------~p~~r~~~~~~~---~~~~i~v~GG~~~~--~~~~~~~~yd~~~ 225 (306)
T 3ii7_A 159 LGNNVSGRVLNSCEVYDPATETWTELC-P-------MIEARKNHGLVF---VKDKIFAVGGQNGL--GGLDNVEYYDIKL 225 (306)
T ss_dssp ESCTTTCEECCCEEEEETTTTEEEEEC-C-------CSSCCBSCEEEE---ETTEEEEECCEETT--EEBCCEEEEETTT
T ss_pred CCCCCcccccceEEEeCCCCCeEEECC-C-------ccchhhcceEEE---ECCEEEEEeCCCCC--CCCceEEEeeCCC
Confidence 345899999999999874 5 676666666664 89999999986432 1223566667666
Q ss_pred C-EEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeec-----CCeEEEEECCCCceEECCCCCCCCCCCcc
Q 017381 287 N-WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYT-----WPEILYYNVARRTWHWLPSCPSLPHKWSC 357 (372)
Q Consensus 287 ~-W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~v~~yd~~~~~w~~v~~~~~~~~~~~~ 357 (372)
+ |+++..+|.. .....++..++.||+.++. ...+.+||+++++|+.++.+|.++.-+++
T Consensus 226 ~~W~~~~~~p~~------------r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~ 290 (306)
T 3ii7_A 226 NEWKMVSPMPWK------------GVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDKWVANSKVRAFPVTSCL 290 (306)
T ss_dssp TEEEECCCCSCC------------BSCCEEEEETTEEEEEECBCSSSBCCEEEEEETTTTEEEEEEEEECCSCTTCE
T ss_pred CcEEECCCCCCC------------ccceeEEEECCEEEEEeCcCCCeeeeeEEEEcCCCCeEEeCCCcccccceeEE
Confidence 5 9999877632 1223455568889998752 35699999999999999988877654433
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1e-20 Score=171.79 Aligned_cols=253 Identities=17% Similarity=0.117 Sum_probs=179.3
Q ss_pred eEEEEeCC--CCCCccccccCCCCCeeeecCCCCCCCCCceEEEEecCcEEEEecCC---------CceEEEEeccccce
Q 017381 65 CFILLSHP--QCYDQYPLYDSTHGTWRRLSLPYSLLLPSAATLLSSSKGLLCFSLPS---------SSSFLVCNLVTLSS 133 (372)
Q Consensus 65 ~~~~~~~~--~~~~~~~~~d~~~~~w~~l~~~~~~~~~~~~~~~~s~~Gll~~~~~~---------~~~~~v~NP~t~~~ 133 (372)
.++++.+. .....+..||+..++|..++ .+|..+..+.++..+|.|++.++. .+.+++|||.+++|
T Consensus 26 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W 102 (308)
T 1zgk_A 26 LIYTAGGYFRQSLSYLEAYNPSNGTWLRLA---DLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQW 102 (308)
T ss_dssp CEEEECCBSSSBCCCEEEEETTTTEEEECC---CCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEE
T ss_pred EEEEEeCcCCCCcceEEEEcCCCCeEeECC---CCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeE
Confidence 35555432 22345678999999999885 223334444455667766665542 24789999999999
Q ss_pred eccCCCCCCCCceeEEEEeCCCCEEEEEEeecCC---CceEEEEECCCCCccccccCCCCccccccCCCcccEEECCEEE
Q 017381 134 RTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSF---PNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLY 210 (372)
Q Consensus 134 ~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~~---~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~~y 210 (372)
..+++++.++.....+.... +|+++|+... ...+++||+.+++|+... .+|. .+..+..+.++|++|
T Consensus 103 ~~~~~~p~~r~~~~~~~~~~----~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~--~~p~----~r~~~~~~~~~~~iy 172 (308)
T 1zgk_A 103 SPCAPMSVPRNRIGVGVIDG----HIYAVGGSHGCIHHNSVERYEPERDEWHLVA--PMLT----RRIGVGVAVLNRLLY 172 (308)
T ss_dssp EECCCCSSCCBTCEEEEETT----EEEEECCEETTEECCCEEEEETTTTEEEECC--CCSS----CCBSCEEEEETTEEE
T ss_pred eECCCCCcCccccEEEEECC----EEEEEcCCCCCcccccEEEECCCCCeEeECC--CCCc----cccceEEEEECCEEE
Confidence 99999887766555444322 7999987543 358999999999999998 6664 234566788899999
Q ss_pred EeeeC-----CcEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeEEEEEeeecCCccceEEEEEEcCC
Q 017381 211 FTTPE-----PFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCG 285 (372)
Q Consensus 211 ~~~~~-----~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~~~ 285 (372)
.+++. ...+..||+.+++|+.+. + +|..+..+.++. .+++||++++..... ..-++|.+|..
T Consensus 173 v~GG~~~~~~~~~~~~yd~~~~~W~~~~-~-------~p~~r~~~~~~~---~~~~iyv~GG~~~~~--~~~~v~~yd~~ 239 (308)
T 1zgk_A 173 AVGGFDGTNRLNSAECYYPERNEWRMIT-A-------MNTIRSGAGVCV---LHNCIYAAGGYDGQD--QLNSVERYDVE 239 (308)
T ss_dssp EECCBCSSCBCCCEEEEETTTTEEEECC-C-------CSSCCBSCEEEE---ETTEEEEECCBCSSS--BCCCEEEEETT
T ss_pred EEeCCCCCCcCceEEEEeCCCCeEeeCC-C-------CCCccccceEEE---ECCEEEEEeCCCCCC--ccceEEEEeCC
Confidence 99863 245999999999999874 4 666655556664 899999999854322 23456666766
Q ss_pred CC-EEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeec-----CCeEEEEECCCCceEECCCCCCCCCCC
Q 017381 286 GN-WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYT-----WPEILYYNVARRTWHWLPSCPSLPHKW 355 (372)
Q Consensus 286 ~~-W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~v~~yd~~~~~w~~v~~~~~~~~~~ 355 (372)
++ |+++..+|... ....++..++.||+.++. ...+.+||+++++|++++.+|.++.-+
T Consensus 240 ~~~W~~~~~~p~~r------------~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~ 303 (308)
T 1zgk_A 240 TETWTFVAPMKHRR------------SALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTSGRSGV 303 (308)
T ss_dssp TTEEEECCCCSSCC------------BSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSC
T ss_pred CCcEEECCCCCCCc------------cceEEEEECCEEEEEcCcCCCcccceEEEEcCCCCEEeecCCCCCCcccc
Confidence 65 99988776321 123344568889998752 346899999999999999988776543
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.7e-20 Score=166.88 Aligned_cols=241 Identities=12% Similarity=0.076 Sum_probs=172.3
Q ss_pred CccccccCCCCCeeeecCCCCCCCCCceEEEEecCcEEEEecCC-----CceEEEEeccccceeccCCCCCCCCceeEEE
Q 017381 76 DQYPLYDSTHGTWRRLSLPYSLLLPSAATLLSSSKGLLCFSLPS-----SSSFLVCNLVTLSSRTIDFPTYPFDFELLTL 150 (372)
Q Consensus 76 ~~~~~~d~~~~~w~~l~~~~~~~~~~~~~~~~s~~Gll~~~~~~-----~~~~~v~NP~t~~~~~lP~~~~~~~~~~~~~ 150 (372)
..+..||+..++|..++ .+|..+..+.++..+|.|++.++. .+.+++|||.+++|..+++++.++..+..+.
T Consensus 30 ~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~ 106 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVA---ELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV 106 (302)
T ss_dssp CCEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE
T ss_pred CcEEEEcCcCCcEeEcc---cCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE
Confidence 35677999999999885 223334444455667766665542 2478999999999999999887766555444
Q ss_pred EeCCCCEEEEEEeecCCC---ceEEEEECCCCCccccccCCCCccccccCCCcccEEECCEEEEeeeC-------CcEEE
Q 017381 151 VSTPSGYKIFMLFAKSFP---NYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPE-------PFSIV 220 (372)
Q Consensus 151 ~~~~~~ykvv~~~~~~~~---~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~~y~~~~~-------~~~i~ 220 (372)
... +|+++||.... ..+++||+.+++|+.+. .+|. .+..+..+.++|++|.+++. ...+.
T Consensus 107 ~~~----~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~--~~p~----~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 176 (302)
T 2xn4_A 107 LNG----LLYAVGGFDGSTGLSSVEAYNIKSNEWFHVA--PMNT----RRSSVGVGVVGGLLYAVGGYDVASRQCLSTVE 176 (302)
T ss_dssp ETT----EEEEEEEECSSCEEEEEEEEETTTTEEEEEC--CCSS----CCBSCEEEEETTEEEEECCEETTTTEECCCEE
T ss_pred ECC----EEEEEcCCCCCccCceEEEEeCCCCeEeecC--CCCC----cccCceEEEECCEEEEEeCCCCCCCccccEEE
Confidence 322 78888885432 48999999999999998 6664 23456678899999999752 24589
Q ss_pred EEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeEEEEEeeecCCccceEEEEEEcCCCC-EEEEEecChHHH
Q 017381 221 RFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGN-WIEVERVPEMMC 299 (372)
Q Consensus 221 ~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~~~~~-W~~v~~lp~~~~ 299 (372)
.||+.+++|+.+. + +|..+..+.++. .+++||++++.... ...-++|.+|..+. |+++..+|...
T Consensus 177 ~yd~~~~~W~~~~-~-------~p~~r~~~~~~~---~~~~iyv~GG~~~~--~~~~~~~~yd~~~~~W~~~~~~~~~r- 242 (302)
T 2xn4_A 177 CYNATTNEWTYIA-E-------MSTRRSGAGVGV---LNNLLYAVGGHDGP--LVRKSVEVYDPTTNAWRQVADMNMCR- 242 (302)
T ss_dssp EEETTTTEEEEEC-C-------CSSCCBSCEEEE---ETTEEEEECCBSSS--SBCCCEEEEETTTTEEEEECCCSSCC-
T ss_pred EEeCCCCcEEECC-C-------CccccccccEEE---ECCEEEEECCCCCC--cccceEEEEeCCCCCEeeCCCCCCcc-
Confidence 9999999999874 4 666665566664 89999999985422 12235666676665 99998776321
Q ss_pred HHhhhhccCCCceEEEEeeCCEEEEEeecC-----CeEEEEECCCCceEECC-CCCCCCCC
Q 017381 300 RKFMSVCYHNYDHVYCFWHQGMICVCCYTW-----PEILYYNVARRTWHWLP-SCPSLPHK 354 (372)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~v~~yd~~~~~w~~v~-~~~~~~~~ 354 (372)
....++..++.||+.++.. ..+.+||+++++|+.++ .+|.++..
T Consensus 243 -----------~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~r~~ 292 (302)
T 2xn4_A 243 -----------RNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVVSSCMSTGRSY 292 (302)
T ss_dssp -----------BSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECSSCCSSCCBS
T ss_pred -----------ccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCeEEECCcccCccccc
Confidence 1233455688899987532 35999999999999997 67766543
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.3e-20 Score=167.60 Aligned_cols=237 Identities=14% Similarity=0.145 Sum_probs=169.8
Q ss_pred CccccccCCCCCeeeecCCCCCCCCCceEEEEecCcEEEEecCC-----------CceEEEEeccccceeccCCCCCCCC
Q 017381 76 DQYPLYDSTHGTWRRLSLPYSLLLPSAATLLSSSKGLLCFSLPS-----------SSSFLVCNLVTLSSRTIDFPTYPFD 144 (372)
Q Consensus 76 ~~~~~~d~~~~~w~~l~~~~~~~~~~~~~~~~s~~Gll~~~~~~-----------~~~~~v~NP~t~~~~~lP~~~~~~~ 144 (372)
..+..||+..++|...++|. |.++..+.++..+|.|++.++. .+.+++|||.+++|..+|+++.++.
T Consensus 13 ~~~~~yd~~~~~W~~~~~~~--p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~ 90 (315)
T 4asc_A 13 EGAVAYDPAANECYCASLSS--QVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRC 90 (315)
T ss_dssp TEEEEEETTTTEEEEEECCC--CSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEE
T ss_pred CceEEECCCCCeEecCCCCC--CCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchh
Confidence 35678999999998755543 2345555566677755444331 1248999999999999999887665
Q ss_pred ceeEEEEeCCCCEEEEEEeecC------CCceEEEEECCCCCccccccCCCCccccccCCCcccEEECCEEEEeeeC---
Q 017381 145 FELLTLVSTPSGYKIFMLFAKS------FPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPE--- 215 (372)
Q Consensus 145 ~~~~~~~~~~~~ykvv~~~~~~------~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~~y~~~~~--- 215 (372)
.+..+.... +|+++||.. ....+++||+.+++|+.++ .+|. .+..+.++.++|++|.+++.
T Consensus 91 ~~~~~~~~~----~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~--~~p~----~r~~~~~~~~~~~iyv~GG~~~~ 160 (315)
T 4asc_A 91 LFGLGEALN----SIYVVGGREIKDGERCLDSVMCYDRLSFKWGESD--PLPY----VVYGHTVLSHMDLVYVIGGKGSD 160 (315)
T ss_dssp SCEEEEETT----EEEEECCEESSTTCCBCCCEEEEETTTTEEEECC--CCSS----CCBSCEEEEETTEEEEECCBCTT
T ss_pred ceeEEEECC----EEEEEeCCcCCCCCcccceEEEECCCCCcEeECC--CCCC----cccceeEEEECCEEEEEeCCCCC
Confidence 554444322 899998842 2358999999999999998 6665 23456788899999999864
Q ss_pred ---CcEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeEEEEEeeecCCccceEEEEEEcCCCC-EEEE
Q 017381 216 ---PFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGN-WIEV 291 (372)
Q Consensus 216 ---~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~~~~~-W~~v 291 (372)
...+..||+.+++|+.+. + +|..+..+..++ .+|+||++++..... ..-++|.+|..++ |+++
T Consensus 161 ~~~~~~~~~yd~~~~~W~~~~-~-------~p~~r~~~~~~~---~~~~iyv~GG~~~~~--~~~~~~~yd~~~~~W~~~ 227 (315)
T 4asc_A 161 RKCLNKMCVYDPKKFEWKELA-P-------MQTARSLFGATV---HDGRIIVAAGVTDTG--LTSSAEVYSITDNKWAPF 227 (315)
T ss_dssp SCBCCCEEEEETTTTEEEECC-C-------CSSCCBSCEEEE---ETTEEEEEEEECSSS--EEEEEEEEETTTTEEEEE
T ss_pred CcccceEEEEeCCCCeEEECC-C-------CCCchhceEEEE---ECCEEEEEeccCCCC--ccceEEEEECCCCeEEEC
Confidence 246999999999999874 5 676666666664 899999999964322 2346777777665 9999
Q ss_pred EecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeecC--------------CeEEEEECCCCceEECCCCC
Q 017381 292 ERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTW--------------PEILYYNVARRTWHWLPSCP 349 (372)
Q Consensus 292 ~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--------------~~v~~yd~~~~~w~~v~~~~ 349 (372)
..+|... ....++..++.||+.++.. ..+.+||+++++|+.++..|
T Consensus 228 ~~~p~~r------------~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~ 287 (315)
T 4asc_A 228 EAFPQER------------SSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGVLREI 287 (315)
T ss_dssp CCCSSCC------------BSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEEESCS
T ss_pred CCCCCcc------------cceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhhccCC
Confidence 8776331 2234455678888887531 34899999999999994433
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.3e-20 Score=168.83 Aligned_cols=241 Identities=14% Similarity=0.105 Sum_probs=173.5
Q ss_pred CccccccCCCCCeeeecCCCCCCCCCceEEEEecCcEEEEecCC-----CceEEEEeccccc---eeccCCCCCCCCcee
Q 017381 76 DQYPLYDSTHGTWRRLSLPYSLLLPSAATLLSSSKGLLCFSLPS-----SSSFLVCNLVTLS---SRTIDFPTYPFDFEL 147 (372)
Q Consensus 76 ~~~~~~d~~~~~w~~l~~~~~~~~~~~~~~~~s~~Gll~~~~~~-----~~~~~v~NP~t~~---~~~lP~~~~~~~~~~ 147 (372)
..+..||+..++|..++ .+|..+..+..+..+|.|++.++. .+.+++|||.+++ |..+++++.++..+.
T Consensus 31 ~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~ 107 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLP---SITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAG 107 (301)
T ss_dssp CCEEEEETTTTEEEECC---CCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCE
T ss_pred eEEEEEcCCCCeEEeCC---CCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCcccee
Confidence 45678999999999886 223334444455667766665542 2479999999999 999999887766555
Q ss_pred EEEEeCCCCEEEEEEeecCC---CceEEEEECCCCCccccccCCCCccccccCCCcccEEECCEEEEeeeC-----CcEE
Q 017381 148 LTLVSTPSGYKIFMLFAKSF---PNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPE-----PFSI 219 (372)
Q Consensus 148 ~~~~~~~~~ykvv~~~~~~~---~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~~y~~~~~-----~~~i 219 (372)
.+... -+|+++|+... ...+++||+.+++|+.+. .+|. .+..+..+.++|++|.+++. ...+
T Consensus 108 ~~~~~----~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~--~~p~----~r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 177 (301)
T 2vpj_A 108 ATTLG----DMIYVSGGFDGSRRHTSMERYDPNIDQWSMLG--DMQT----AREGAGLVVASGVIYCLGGYDGLNILNSV 177 (301)
T ss_dssp EEEET----TEEEEECCBCSSCBCCEEEEEETTTTEEEEEE--ECSS----CCBSCEEEEETTEEEEECCBCSSCBCCCE
T ss_pred EEEEC----CEEEEEcccCCCcccceEEEEcCCCCeEEECC--CCCC----CcccceEEEECCEEEEECCCCCCcccceE
Confidence 54442 27999987543 348999999999999988 5654 23456678889999999763 2458
Q ss_pred EEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeEEEEEeeecCCccceEEEEEEcCCCC-EEEEEecChHH
Q 017381 220 VRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGN-WIEVERVPEMM 298 (372)
Q Consensus 220 ~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~~~~~-W~~v~~lp~~~ 298 (372)
.+||+.+++|+.+. + +|..+..+.++. .+++|+++++...... .-++|.+|..+. |+++..+|...
T Consensus 178 ~~~d~~~~~W~~~~-~-------~p~~r~~~~~~~---~~~~i~v~GG~~~~~~--~~~v~~yd~~~~~W~~~~~~p~~r 244 (301)
T 2vpj_A 178 EKYDPHTGHWTNVT-P-------MATKRSGAGVAL---LNDHIYVVGGFDGTAH--LSSVEAYNIRTDSWTTVTSMTTPR 244 (301)
T ss_dssp EEEETTTTEEEEEC-C-------CSSCCBSCEEEE---ETTEEEEECCBCSSSB--CCCEEEEETTTTEEEEECCCSSCC
T ss_pred EEEeCCCCcEEeCC-C-------CCcccccceEEE---ECCEEEEEeCCCCCcc--cceEEEEeCCCCcEEECCCCCCcc
Confidence 99999999999874 4 666665566664 8999999998543221 235666666655 99998776321
Q ss_pred HHHhhhhccCCCceEEEEeeCCEEEEEeecC-----CeEEEEECCCCceEECCCCCCCCCC
Q 017381 299 CRKFMSVCYHNYDHVYCFWHQGMICVCCYTW-----PEILYYNVARRTWHWLPSCPSLPHK 354 (372)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~v~~yd~~~~~w~~v~~~~~~~~~ 354 (372)
....++..++.||+.++.. ..+.+||+++++|+.++.+|.++..
T Consensus 245 ------------~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~ 293 (301)
T 2vpj_A 245 ------------CYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSWEVVTSMGTQRCD 293 (301)
T ss_dssp ------------BSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTEEEEEEEEEEEEES
T ss_pred ------------cceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCeEEEcCCCCccccc
Confidence 1233455688899987532 4589999999999999988876543
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-19 Score=164.82 Aligned_cols=231 Identities=14% Similarity=0.215 Sum_probs=165.8
Q ss_pred cccccCCCCCeeeecCCCCCCCCCceEEEEecCcEEEEecCC-----------CceEEEEeccccceeccCCCCCCCCce
Q 017381 78 YPLYDSTHGTWRRLSLPYSLLLPSAATLLSSSKGLLCFSLPS-----------SSSFLVCNLVTLSSRTIDFPTYPFDFE 146 (372)
Q Consensus 78 ~~~~d~~~~~w~~l~~~~~~~~~~~~~~~~s~~Gll~~~~~~-----------~~~~~v~NP~t~~~~~lP~~~~~~~~~ 146 (372)
...||+..++|...+++. +.++..+.++..+|.|++.++. ...+++|||.+++|..+|+++.++..+
T Consensus 26 ~~~yd~~~~~W~~~~~~~--~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~ 103 (318)
T 2woz_A 26 AVAYDPMENECYLTALAE--QIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLF 103 (318)
T ss_dssp EEEEETTTTEEEEEEECT--TSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSC
T ss_pred eEEECCCCCceecccCCc--cCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccccc
Confidence 578999999998865442 2334555566777755554431 113889999999999999988776655
Q ss_pred eEEEEeCCCCEEEEEEeecCC-----CceEEEEECCCCCccccccCCCCccccccCCCcccEEECCEEEEeeeC------
Q 017381 147 LLTLVSTPSGYKIFMLFAKSF-----PNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPE------ 215 (372)
Q Consensus 147 ~~~~~~~~~~ykvv~~~~~~~-----~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~~y~~~~~------ 215 (372)
..+.... +|+++||... ...+++||+.+++|+.++ .+|. .+..+..++++|++|++++.
T Consensus 104 ~~~~~~~----~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~--~~p~----~r~~~~~~~~~~~iyv~GG~~~~~~~ 173 (318)
T 2woz_A 104 GLGEVDD----KIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVK--NLPI----KVYGHNVISHNGMIYCLGGKTDDKKC 173 (318)
T ss_dssp EEEEETT----EEEEEEEEBTTTCCEEEEEEEEETTTTEEEEEC--CCSS----CEESCEEEEETTEEEEECCEESSSCB
T ss_pred ceEEECC----EEEEEcCccCCCCcccceEEEEeCCCCCEeECC--CCCC----cccccEEEEECCEEEEEcCCCCCCCc
Confidence 5444322 7899888641 248999999999999998 6665 22456678899999999862
Q ss_pred CcEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeEEEEEeeecCCccceEEEEEEcCCCC-EEEEEec
Q 017381 216 PFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGN-WIEVERV 294 (372)
Q Consensus 216 ~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~~~~~-W~~v~~l 294 (372)
...+..||+.+++|+.+. + +|..+..+.+++ .+|+||++++.... ...-++|.+|..++ |+++..+
T Consensus 174 ~~~~~~yd~~~~~W~~~~-~-------~p~~r~~~~~~~---~~~~iyv~GG~~~~--~~~~~~~~yd~~~~~W~~~~~~ 240 (318)
T 2woz_A 174 TNRVFIYNPKKGDWKDLA-P-------MKTPRSMFGVAI---HKGKIVIAGGVTED--GLSASVEAFDLKTNKWEVMTEF 240 (318)
T ss_dssp CCCEEEEETTTTEEEEEC-C-------CSSCCBSCEEEE---ETTEEEEEEEEETT--EEEEEEEEEETTTCCEEECCCC
T ss_pred cceEEEEcCCCCEEEECC-C-------CCCCcccceEEE---ECCEEEEEcCcCCC--CccceEEEEECCCCeEEECCCC
Confidence 245999999999999874 4 666665556664 89999999986532 22346777776655 9999877
Q ss_pred ChHHHHHhhhhccCCCceEEEEeeCCEEEEEeec--------------CCeEEEEECCCCceEEC
Q 017381 295 PEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYT--------------WPEILYYNVARRTWHWL 345 (372)
Q Consensus 295 p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------------~~~v~~yd~~~~~w~~v 345 (372)
|... ....++..++.||+.++. ...+.+||+++++|+++
T Consensus 241 p~~r------------~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 241 PQER------------SSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp SSCC------------BSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred CCcc------------cceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence 6421 123445567888888642 24589999999999998
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.5e-17 Score=148.17 Aligned_cols=203 Identities=14% Similarity=0.167 Sum_probs=149.4
Q ss_pred CceEEEEeccccceeccCCCCCCCCceeEEEEeCCCCEEEEEEeecC--CCceEEEEECCCCCccccccCCCCccccccC
Q 017381 120 SSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKS--FPNYAFVYDSTDQSWSKFDIDGFPSMILSQS 197 (372)
Q Consensus 120 ~~~~~v~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~--~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~ 197 (372)
.+.+.+|||.+++|..+++++.++..+..+.... +|+++||.. ....+++||+.+++|+.+. .+|. .+
T Consensus 23 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~----~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~--~~p~----~r 92 (306)
T 3ii7_A 23 PQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDN----VVYILGGSQLFPIKRMDCYNVVKDSWYSKL--GPPT----PR 92 (306)
T ss_dssp TTSEEEEETTTTEEEECCCCSCCCBSCEEEEETT----EEEEECCBSSSBCCEEEEEETTTTEEEEEE--CCSS----CC
T ss_pred CceEEEecCCCCCEecCCCCCcccceeEEEEECC----EEEEEeCCCCCCcceEEEEeCCCCeEEECC--CCCc----cc
Confidence 4689999999999999999887766555444322 789998864 2358999999999999998 6664 23
Q ss_pred CCcccEEECCEEEEeeeCC------cEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeEEEEEeeecC
Q 017381 198 SHQEGVFYKGSLYFTTPEP------FSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRN 271 (372)
Q Consensus 198 ~~~~~v~~~G~~y~~~~~~------~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~ 271 (372)
..+..+.++|++|++++.. ..+..||+.+++|+.+. + +|..+..+.++. .+|+||++++....
T Consensus 93 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~-~-------~p~~r~~~~~~~---~~~~iyv~GG~~~~ 161 (306)
T 3ii7_A 93 DSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKP-S-------MLTQRCSHGMVE---ANGLIYVCGGSLGN 161 (306)
T ss_dssp BSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEEC-C-------CSSCCBSCEEEE---ETTEEEEECCEESC
T ss_pred cceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCC-C-------CcCCcceeEEEE---ECCEEEEECCCCCC
Confidence 4567788999999998632 45899999999999873 4 666666666664 89999999986532
Q ss_pred Cc--cceEEEEEEcCCCC-EEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeec-----CCeEEEEECCCCceE
Q 017381 272 GI--STTMKLWELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYT-----WPEILYYNVARRTWH 343 (372)
Q Consensus 272 ~~--~~~i~vw~l~~~~~-W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~v~~yd~~~~~w~ 343 (372)
.. ...-++|.+|..+. |+++..+|.. .....++..++.||+.++. ...+.+||+++++|+
T Consensus 162 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~------------r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~ 229 (306)
T 3ii7_A 162 NVSGRVLNSCEVYDPATETWTELCPMIEA------------RKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWK 229 (306)
T ss_dssp TTTCEECCCEEEEETTTTEEEEECCCSSC------------CBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEE
T ss_pred CCcccccceEEEeCCCCCeEEECCCccch------------hhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEE
Confidence 21 01335666676665 9999877632 1223344558889998753 246899999999999
Q ss_pred ECCCCCCCCCCC
Q 017381 344 WLPSCPSLPHKW 355 (372)
Q Consensus 344 ~v~~~~~~~~~~ 355 (372)
.++.+|.++..+
T Consensus 230 ~~~~~p~~r~~~ 241 (306)
T 3ii7_A 230 MVSPMPWKGVTV 241 (306)
T ss_dssp ECCCCSCCBSCC
T ss_pred ECCCCCCCccce
Confidence 999888766543
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.3e-17 Score=148.11 Aligned_cols=201 Identities=9% Similarity=0.078 Sum_probs=147.6
Q ss_pred ceEEEEeccccceeccCCCCCCCCceeEEEEeCCCCEEEEEEeecCC---CceEEEEECCCCCccccccCCCCccccccC
Q 017381 121 SSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSF---PNYAFVYDSTDQSWSKFDIDGFPSMILSQS 197 (372)
Q Consensus 121 ~~~~v~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~~---~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~ 197 (372)
+.+.+|||.+++|..+++++.++..+..+... -+|+++||... ...+++||+.+++|+.+. .+|. .+
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~----~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~--~~p~----~r 99 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCRAGMVYMA----GLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA--NMRD----RR 99 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEET----TEEEEESCBCSSSBCCCEEEEETTTTEEEEEC--CCSS----CC
T ss_pred CcEEEEcCcCCcEeEcccCCcccccceEEEEC----CEEEEEeCcCCCccccceEEECCCCCceeeCC--CCCc----cc
Confidence 57899999999999999888766554444332 27999988543 358999999999999998 6665 23
Q ss_pred CCcccEEECCEEEEeeeCC-----cEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeEEEEEeeecCC
Q 017381 198 SHQEGVFYKGSLYFTTPEP-----FSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNG 272 (372)
Q Consensus 198 ~~~~~v~~~G~~y~~~~~~-----~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~~ 272 (372)
..+..+.++|++|.+++.. ..+..||+.+++|+.+. + +|..+..+..++ .+|+||++++.....
T Consensus 100 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~-~-------~p~~r~~~~~~~---~~~~iyv~GG~~~~~ 168 (302)
T 2xn4_A 100 STLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVA-P-------MNTRRSSVGVGV---VGGLLYAVGGYDVAS 168 (302)
T ss_dssp BSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEEC-C-------CSSCCBSCEEEE---ETTEEEEECCEETTT
T ss_pred cceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecC-C-------CCCcccCceEEE---ECCEEEEEeCCCCCC
Confidence 4567788999999998632 35899999999999874 4 666665556663 899999999864322
Q ss_pred ccceEEEEEEcCCCC-EEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeec-----CCeEEEEECCCCceEECC
Q 017381 273 ISTTMKLWELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYT-----WPEILYYNVARRTWHWLP 346 (372)
Q Consensus 273 ~~~~i~vw~l~~~~~-W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~v~~yd~~~~~w~~v~ 346 (372)
....-++|.+|..++ |+++..+|... ....++..++.||+.++. ...+.+||+++++|+.++
T Consensus 169 ~~~~~~~~~yd~~~~~W~~~~~~p~~r------------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~ 236 (302)
T 2xn4_A 169 RQCLSTVECYNATTNEWTYIAEMSTRR------------SGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVA 236 (302)
T ss_dssp TEECCCEEEEETTTTEEEEECCCSSCC------------BSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEEC
T ss_pred CccccEEEEEeCCCCcEEECCCCcccc------------ccccEEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCC
Confidence 111235666676665 99998776321 223445568889998753 246999999999999999
Q ss_pred CCCCCCCC
Q 017381 347 SCPSLPHK 354 (372)
Q Consensus 347 ~~~~~~~~ 354 (372)
.+|.++..
T Consensus 237 ~~~~~r~~ 244 (302)
T 2xn4_A 237 DMNMCRRN 244 (302)
T ss_dssp CCSSCCBS
T ss_pred CCCCcccc
Confidence 88876643
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.79 E-value=9.9e-18 Score=155.20 Aligned_cols=227 Identities=13% Similarity=0.115 Sum_probs=150.9
Q ss_pred CCCceEEEEecCcEEEEecC-CCceEEEEeccc--cceeccCCCC-CCCCceeEEEEeCCCCEEEEEEeec-C-------
Q 017381 99 LPSAATLLSSSKGLLCFSLP-SSSSFLVCNLVT--LSSRTIDFPT-YPFDFELLTLVSTPSGYKIFMLFAK-S------- 166 (372)
Q Consensus 99 ~~~~~~~~~s~~Gll~~~~~-~~~~~~v~NP~t--~~~~~lP~~~-~~~~~~~~~~~~~~~~ykvv~~~~~-~------- 166 (372)
..+.....+..+|.|++.++ ..+.+++|||.+ ++|..+++++ .++..+..+.... +|+++||. .
T Consensus 8 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~----~lyv~GG~~~~~~~~~~ 83 (357)
T 2uvk_A 8 VPFKSGTGAIDNDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDG----NLYVFGGIGKNSEGLTQ 83 (357)
T ss_dssp SCCCSCEEEEETTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETT----EEEEECCEEECTTSCEE
T ss_pred ccccceEEEEECCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEECC----EEEEEcCCCCCCCccce
Confidence 33444445555786666554 346899999984 9999999988 5665555444322 79999886 2
Q ss_pred CCceEEEEECCCCCccccccCCCCccccccCCCcccEEECCEEEEeeeCC------------------------------
Q 017381 167 FPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEP------------------------------ 216 (372)
Q Consensus 167 ~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~~y~~~~~~------------------------------ 216 (372)
....+++||+.+++|+.+. .+++ . .+..+.++.++|++|++++..
T Consensus 84 ~~~~v~~yd~~~~~W~~~~--~~~p--~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (357)
T 2uvk_A 84 VFNDVHKYNPKTNSWVKLM--SHAP--M-GMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFD 158 (357)
T ss_dssp ECCCEEEEETTTTEEEECS--CCCS--S-CCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred eeccEEEEeCCCCcEEECC--CCCC--c-ccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhcc
Confidence 1348999999999999998 5552 1 234556677999999998631
Q ss_pred ---------cEEEEEecCCCeeeccCCCCccccccCCCcccc-cceeeeccCCCeEEEEEeeecCCccceEEEEEEc--C
Q 017381 217 ---------FSIVRFDLENGIWETPNDANDHMTMMLPHELTF-FRLVNDGEESNKLYLIGGVGRNGISTTMKLWELG--C 284 (372)
Q Consensus 217 ---------~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~-~~lv~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~--~ 284 (372)
..+.+||+.+++|+.+. + +|..... +.++. .+++||++++..... ....++|.++ .
T Consensus 159 ~~~~~~~~~~~v~~yd~~~~~W~~~~-~-------~p~~~~~~~~~~~---~~~~iyv~GG~~~~~-~~~~~v~~~d~d~ 226 (357)
T 2uvk_A 159 KKAEDYFFNKFLLSFDPSTQQWSYAG-E-------SPWYGTAGAAVVN---KGDKTWLINGEAKPG-LRTDAVFELDFTG 226 (357)
T ss_dssp SCGGGGCCCCEEEEEETTTTEEEEEE-E-------CSSCCCBSCEEEE---ETTEEEEECCEEETT-EECCCEEEEECC-
T ss_pred ccccccCCcccEEEEeCCCCcEEECC-C-------CCCCCcccccEEE---ECCEEEEEeeecCCC-cccCceEEEEecC
Confidence 47999999999999873 4 5644333 55553 899999999864322 2233455554 3
Q ss_pred CCC-EEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeecC----------------------CeEEEEECCCCc
Q 017381 285 GGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTW----------------------PEILYYNVARRT 341 (372)
Q Consensus 285 ~~~-W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----------------------~~v~~yd~~~~~ 341 (372)
.+. |+++..+|... ......++..++.||+.++.. ..+.+||+++++
T Consensus 227 ~~~~W~~~~~~~~~~----------~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~ 296 (357)
T 2uvk_A 227 NNLKWNKLAPVSSPD----------GVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGK 296 (357)
T ss_dssp --CEEEECCCSSTTT----------CCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---
T ss_pred CCCcEEecCCCCCCc----------ccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCc
Confidence 544 99988775321 011233556788899987521 257899999999
Q ss_pred eEECCCCCCCCCCCc
Q 017381 342 WHWLPSCPSLPHKWS 356 (372)
Q Consensus 342 w~~v~~~~~~~~~~~ 356 (372)
|+.++.+|.++..+.
T Consensus 297 W~~~~~~p~~r~~~~ 311 (357)
T 2uvk_A 297 WDKSGELSQGRAYGV 311 (357)
T ss_dssp CEEEEECSSCCBSSE
T ss_pred eeeCCCCCCCcccce
Confidence 999998887765433
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=99.78 E-value=3.9e-17 Score=148.16 Aligned_cols=200 Identities=12% Similarity=0.082 Sum_probs=146.6
Q ss_pred CceEEEEeccccceeccCCCCCCCCceeEEEEeCCCCEEEEEEeec----C---CCceEEEEECCCCCccccccCCCCcc
Q 017381 120 SSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAK----S---FPNYAFVYDSTDQSWSKFDIDGFPSM 192 (372)
Q Consensus 120 ~~~~~v~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~----~---~~~~~~vy~s~~~~W~~~~~~~~p~~ 192 (372)
.+.+.+|||.+++|..+++++.++....++.... +|+++||. . ....+++||+.+++|+.++ .+|.
T Consensus 38 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~----~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~--~~p~- 110 (308)
T 1zgk_A 38 LSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGG----LLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCA--PMSV- 110 (308)
T ss_dssp CCCEEEEETTTTEEEECCCCSSCCBSCEEEEETT----EEEEECCEEEETTEEEECCCEEEEETTTTEEEECC--CCSS-
T ss_pred cceEEEEcCCCCeEeECCCCCcccccceEEEECC----EEEEECCCcCCCCCCeecceEEEECCCCCeEeECC--CCCc-
Confidence 3579999999999999998887766554443322 78888875 2 2347999999999999998 6664
Q ss_pred ccccCCCcccEEECCEEEEeeeC-----CcEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeEEEEEe
Q 017381 193 ILSQSSHQEGVFYKGSLYFTTPE-----PFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGG 267 (372)
Q Consensus 193 ~~~~~~~~~~v~~~G~~y~~~~~-----~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~ 267 (372)
.+..+..+.++|++|.+++. ...+..||+.+++|+.+. + +|..+..+..+. .+++||++++
T Consensus 111 ---~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~-~-------~p~~r~~~~~~~---~~~~iyv~GG 176 (308)
T 1zgk_A 111 ---PRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVA-P-------MLTRRIGVGVAV---LNRLLYAVGG 176 (308)
T ss_dssp ---CCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECC-C-------CSSCCBSCEEEE---ETTEEEEECC
T ss_pred ---CccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECC-C-------CCccccceEEEE---ECCEEEEEeC
Confidence 23456678889999999762 245899999999999874 4 666665556663 8999999998
Q ss_pred eecCCccceEEEEEEcCCCC-EEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeec-----CCeEEEEECCCCc
Q 017381 268 VGRNGISTTMKLWELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYT-----WPEILYYNVARRT 341 (372)
Q Consensus 268 ~~~~~~~~~i~vw~l~~~~~-W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~v~~yd~~~~~ 341 (372)
...... .-++|.+|..++ |+++..+|.. .....++..++.||+.++. ...+.+||+++++
T Consensus 177 ~~~~~~--~~~~~~yd~~~~~W~~~~~~p~~------------r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 242 (308)
T 1zgk_A 177 FDGTNR--LNSAECYYPERNEWRMITAMNTI------------RSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETET 242 (308)
T ss_dssp BCSSCB--CCCEEEEETTTTEEEECCCCSSC------------CBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CCCCCc--CceEEEEeCCCCeEeeCCCCCCc------------cccceEEEECCEEEEEeCCCCCCccceEEEEeCCCCc
Confidence 543222 234666666655 9998877632 1123344558889998753 2569999999999
Q ss_pred eEECCCCCCCCCC
Q 017381 342 WHWLPSCPSLPHK 354 (372)
Q Consensus 342 w~~v~~~~~~~~~ 354 (372)
|+.++.+|.++..
T Consensus 243 W~~~~~~p~~r~~ 255 (308)
T 1zgk_A 243 WTFVAPMKHRRSA 255 (308)
T ss_dssp EEECCCCSSCCBS
T ss_pred EEECCCCCCCccc
Confidence 9999988876643
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-16 Score=144.25 Aligned_cols=199 Identities=13% Similarity=0.078 Sum_probs=146.4
Q ss_pred ceEEEEeccccceeccCCCCCCCCceeEEEEeCCCCEEEEEEeecCC---CceEEEEECCCCC---ccccccCCCCcccc
Q 017381 121 SSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSF---PNYAFVYDSTDQS---WSKFDIDGFPSMIL 194 (372)
Q Consensus 121 ~~~~v~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~~---~~~~~vy~s~~~~---W~~~~~~~~p~~~~ 194 (372)
+.+++|||.+++|..+++++.++.....+... -+|+++|+... ...+++||+.+++ |+.+. .+|.
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~----~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~--~~p~--- 101 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVSLH----DRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVA--PMNV--- 101 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEET----TEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEEC--CCSS---
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEEEC----CEEEEEcCCCCCccCceEEEEECCCCCCCeeEECC--CCCC---
Confidence 57899999999999999887765544443332 27898888542 3589999999999 99998 6665
Q ss_pred ccCCCcccEEECCEEEEeeeC-----CcEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeEEEEEeee
Q 017381 195 SQSSHQEGVFYKGSLYFTTPE-----PFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVG 269 (372)
Q Consensus 195 ~~~~~~~~v~~~G~~y~~~~~-----~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~ 269 (372)
.+..+..+.++|++|.+++. ...+..||+.+++|+.+. + +|..+..+..++ .+|+||++++..
T Consensus 102 -~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~-~-------~p~~r~~~~~~~---~~~~iyv~GG~~ 169 (301)
T 2vpj_A 102 -RRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLG-D-------MQTAREGAGLVV---ASGVIYCLGGYD 169 (301)
T ss_dssp -CCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEE-E-------CSSCCBSCEEEE---ETTEEEEECCBC
T ss_pred -CccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECC-C-------CCCCcccceEEE---ECCEEEEECCCC
Confidence 23456678899999999862 246899999999999874 4 666655566664 899999999854
Q ss_pred cCCccceEEEEEEcCCCC-EEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeec-----CCeEEEEECCCCceE
Q 017381 270 RNGISTTMKLWELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYT-----WPEILYYNVARRTWH 343 (372)
Q Consensus 270 ~~~~~~~i~vw~l~~~~~-W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~v~~yd~~~~~w~ 343 (372)
... ..-++|.+|..+. |+++..+|... ....++..++.||+.++. ...+.+||+++++|+
T Consensus 170 ~~~--~~~~~~~~d~~~~~W~~~~~~p~~r------------~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 235 (301)
T 2vpj_A 170 GLN--ILNSVEKYDPHTGHWTNVTPMATKR------------SGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWT 235 (301)
T ss_dssp SSC--BCCCEEEEETTTTEEEEECCCSSCC------------BSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred CCc--ccceEEEEeCCCCcEEeCCCCCccc------------ccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEE
Confidence 322 2335666676655 99997776321 223345568889998753 346999999999999
Q ss_pred ECCCCCCCCCC
Q 017381 344 WLPSCPSLPHK 354 (372)
Q Consensus 344 ~v~~~~~~~~~ 354 (372)
.++.+|.++..
T Consensus 236 ~~~~~p~~r~~ 246 (301)
T 2vpj_A 236 TVTSMTTPRCY 246 (301)
T ss_dssp EECCCSSCCBS
T ss_pred ECCCCCCcccc
Confidence 99988876644
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.1e-16 Score=146.17 Aligned_cols=247 Identities=11% Similarity=0.043 Sum_probs=159.1
Q ss_pred EEEEeCCCCCCccccccCC--CCCeeeecCCCCCC-CCCceEEEEecCcEEEEecCC----------CceEEEEeccccc
Q 017381 66 FILLSHPQCYDQYPLYDST--HGTWRRLSLPYSLL-LPSAATLLSSSKGLLCFSLPS----------SSSFLVCNLVTLS 132 (372)
Q Consensus 66 ~~~~~~~~~~~~~~~~d~~--~~~w~~l~~~~~~~-~~~~~~~~~s~~Gll~~~~~~----------~~~~~v~NP~t~~ 132 (372)
++++.+ .....+..||+. .++|..++ ++| ..+..+.++..+|.|++.++. .+.+++|||.+++
T Consensus 22 iyv~GG-~~~~~~~~~d~~~~~~~W~~~~---~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~ 97 (357)
T 2uvk_A 22 VYIGLG-SAGTAWYKLDTQAKDKKWTALA---AFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS 97 (357)
T ss_dssp EEEECG-GGTTCEEEEETTSSSCCEEECC---CCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTE
T ss_pred EEEEeC-cCCCeEEEEccccCCCCeeECC---CCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCc
Confidence 444432 223456788987 48999885 223 234445556667866665543 2478999999999
Q ss_pred eeccCCCC-CCCCceeEEEEeCCCCEEEEEEeecCC-------------------------------------CceEEEE
Q 017381 133 SRTIDFPT-YPFDFELLTLVSTPSGYKIFMLFAKSF-------------------------------------PNYAFVY 174 (372)
Q Consensus 133 ~~~lP~~~-~~~~~~~~~~~~~~~~ykvv~~~~~~~-------------------------------------~~~~~vy 174 (372)
|..+++++ .++..+..+... -+|+++||... ...+++|
T Consensus 98 W~~~~~~~p~~r~~~~~~~~~----~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~y 173 (357)
T 2uvk_A 98 WVKLMSHAPMGMAGHVTFVHN----GKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSF 173 (357)
T ss_dssp EEECSCCCSSCCSSEEEEEET----TEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEE
T ss_pred EEECCCCCCcccccceEEEEC----CEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEE
Confidence 99999887 444433333222 28999987531 3589999
Q ss_pred ECCCCCccccccCCCCccccccCCCcccEEECCEEEEeeeC------CcEEEEEec--CCCeeeccCCCCccccccC--C
Q 017381 175 DSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPE------PFSIVRFDL--ENGIWETPNDANDHMTMML--P 244 (372)
Q Consensus 175 ~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~~y~~~~~------~~~i~~yD~--~~~~w~~i~~p~~~~~~~~--p 244 (372)
|+.+++|+.+. .+|. +....+..+.++|++|++++. ...+..||+ .+++|+.+. + + |
T Consensus 174 d~~~~~W~~~~--~~p~---~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~-~-------~~~~ 240 (357)
T 2uvk_A 174 DPSTQQWSYAG--ESPW---YGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLA-P-------VSSP 240 (357)
T ss_dssp ETTTTEEEEEE--ECSS---CCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECC-C-------SSTT
T ss_pred eCCCCcEEECC--CCCC---CCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecC-C-------CCCC
Confidence 99999999998 5653 122336678899999999752 235788887 899999864 3 3 3
Q ss_pred CcccccceeeeccCCCeEEEEEeeecCC---------------ccceEEEEEEcCCCC-EEEEEecChHHHHHhhhhccC
Q 017381 245 HELTFFRLVNDGEESNKLYLIGGVGRNG---------------ISTTMKLWELGCGGN-WIEVERVPEMMCRKFMSVCYH 308 (372)
Q Consensus 245 ~~~~~~~lv~e~~~~g~L~vv~~~~~~~---------------~~~~i~vw~l~~~~~-W~~v~~lp~~~~~~~~~~~~~ 308 (372)
..+..+.+++ .+|+||++++..... ......++.+|..+. |+++..+|...
T Consensus 241 ~~~~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r---------- 307 (357)
T 2uvk_A 241 DGVAGGFAGI---SNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGR---------- 307 (357)
T ss_dssp TCCBSCEEEE---ETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCC----------
T ss_pred cccccceEEE---ECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCc----------
Confidence 4343444553 899999999864211 111235566666655 99998887431
Q ss_pred CCceEEEEeeCCEEEEEeecC------CeEEEEECCCCceEECCCC
Q 017381 309 NYDHVYCFWHQGMICVCCYTW------PEILYYNVARRTWHWLPSC 348 (372)
Q Consensus 309 ~~~~~~~~~~~~~i~~~~~~~------~~v~~yd~~~~~w~~v~~~ 348 (372)
....++..++.||+.++.. +.+..+++++++|......
T Consensus 308 --~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~ 351 (357)
T 2uvk_A 308 --AYGVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNLE 351 (357)
T ss_dssp --BSSEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC--
T ss_pred --ccceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeecc
Confidence 1233455688888887532 3488899999999986633
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-16 Score=145.45 Aligned_cols=202 Identities=15% Similarity=0.179 Sum_probs=143.2
Q ss_pred ceEEEEeccccceeccCCCCCCCCceeEEEEeCCCCEEEEEEeec-----CC----CceEEEEECCCCCccccccCCCCc
Q 017381 121 SSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAK-----SF----PNYAFVYDSTDQSWSKFDIDGFPS 191 (372)
Q Consensus 121 ~~~~v~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~-----~~----~~~~~vy~s~~~~W~~~~~~~~p~ 191 (372)
+.+.+|||.+++|.. ++++.+..+..++.+.. .-+|+++||. .. ...+++||+.+++|+.++ .+|.
T Consensus 13 ~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~--~~p~ 87 (315)
T 4asc_A 13 EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTK--ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP--PLPS 87 (315)
T ss_dssp TEEEEEETTTTEEEE-EECCCCSCSSEEEEECT--TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC--CBSS
T ss_pred CceEEECCCCCeEec-CCCCCCCCccceEEEEE--CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECC--CCCc
Confidence 679999999999987 55544333444444432 2278888874 11 125899999999999988 6664
Q ss_pred cccccCCCcccEEECCEEEEeeeC--------CcEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeEE
Q 017381 192 MILSQSSHQEGVFYKGSLYFTTPE--------PFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLY 263 (372)
Q Consensus 192 ~~~~~~~~~~~v~~~G~~y~~~~~--------~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~ 263 (372)
.+..+..+.++|++|++++. ...+..||+.+++|+.+. + +|..+..+..++ .+++||
T Consensus 88 ----~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~-~-------~p~~r~~~~~~~---~~~~iy 152 (315)
T 4asc_A 88 ----PRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESD-P-------LPYVVYGHTVLS---HMDLVY 152 (315)
T ss_dssp ----CEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECC-C-------CSSCCBSCEEEE---ETTEEE
T ss_pred ----chhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECC-C-------CCCcccceeEEE---ECCEEE
Confidence 23456788899999999862 145899999999999874 5 676666666664 899999
Q ss_pred EEEeeecCCccceEEEEEEcCCCC-EEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeecC-----CeEEEEEC
Q 017381 264 LIGGVGRNGISTTMKLWELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTW-----PEILYYNV 337 (372)
Q Consensus 264 vv~~~~~~~~~~~i~vw~l~~~~~-W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~v~~yd~ 337 (372)
++++... .....-++|.+|..+. |+++..+|.. +....++..++.||+.++.. ..+.+||+
T Consensus 153 v~GG~~~-~~~~~~~~~~yd~~~~~W~~~~~~p~~------------r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~ 219 (315)
T 4asc_A 153 VIGGKGS-DRKCLNKMCVYDPKKFEWKELAPMQTA------------RSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSI 219 (315)
T ss_dssp EECCBCT-TSCBCCCEEEEETTTTEEEECCCCSSC------------CBSCEEEEETTEEEEEEEECSSSEEEEEEEEET
T ss_pred EEeCCCC-CCcccceEEEEeCCCCeEEECCCCCCc------------hhceEEEEECCEEEEEeccCCCCccceEEEEEC
Confidence 9998632 1122335677776665 9998877632 12233455688899987532 35899999
Q ss_pred CCCceEECCCCCCCCCCC
Q 017381 338 ARRTWHWLPSCPSLPHKW 355 (372)
Q Consensus 338 ~~~~w~~v~~~~~~~~~~ 355 (372)
++++|+.++.+|.++..+
T Consensus 220 ~~~~W~~~~~~p~~r~~~ 237 (315)
T 4asc_A 220 TDNKWAPFEAFPQERSSL 237 (315)
T ss_dssp TTTEEEEECCCSSCCBSC
T ss_pred CCCeEEECCCCCCcccce
Confidence 999999999888776543
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.1e-16 Score=142.76 Aligned_cols=209 Identities=11% Similarity=0.200 Sum_probs=143.7
Q ss_pred cEEEEecCCCceEEEEeccccceeccCCCCCCCCceeEEEEeCCCCEEEEEEeecC----C-----CceEEEEECCCCCc
Q 017381 111 GLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKS----F-----PNYAFVYDSTDQSW 181 (372)
Q Consensus 111 Gll~~~~~~~~~~~v~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~----~-----~~~~~vy~s~~~~W 181 (372)
+.|++.++ ..+.+|||.+++|...+ ++.+..+...+.+.. .-+|+++||.. . ...+++||+.+++|
T Consensus 16 ~~i~~~GG--~~~~~yd~~~~~W~~~~-~~~~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W 90 (318)
T 2woz_A 16 DLILLVND--TAAVAYDPMENECYLTA-LAEQIPRNHSSIVTQ--QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEW 90 (318)
T ss_dssp EEEEEECS--SEEEEEETTTTEEEEEE-ECTTSCSSEEEEECS--SSCEEEEESSCC-------CCCBEEEEEETTTTEE
T ss_pred chhhhccc--cceEEECCCCCceeccc-CCccCCccceEEEEE--CCEEEEECCcccCccccCCCccccEEEEeCCCCcE
Confidence 34444443 45889999999998843 332222233333322 22788888832 1 12489999999999
Q ss_pred cccccCCCCccccccCCCcccEEECCEEEEeeeCC-------cEEEEEecCCCeeeccCCCCccccccCCCcccccceee
Q 017381 182 SKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEP-------FSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVN 254 (372)
Q Consensus 182 ~~~~~~~~p~~~~~~~~~~~~v~~~G~~y~~~~~~-------~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~ 254 (372)
+.++ .+|. .+..+..+.++|++|++++.. ..+.+||+.+++|+.+. + +|..+..+.+++
T Consensus 91 ~~~~--~~p~----~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~-~-------~p~~r~~~~~~~ 156 (318)
T 2woz_A 91 VGLP--PLPS----ARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVK-N-------LPIKVYGHNVIS 156 (318)
T ss_dssp EECS--CBSS----CBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEEC-C-------CSSCEESCEEEE
T ss_pred EECC--CCCc----cccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECC-C-------CCCcccccEEEE
Confidence 9998 6665 234567788999999998631 35899999999999874 4 676666566664
Q ss_pred eccCCCeEEEEEeeecCCccceEEEEEEcCCCC-EEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeec-----
Q 017381 255 DGEESNKLYLIGGVGRNGISTTMKLWELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYT----- 328 (372)
Q Consensus 255 e~~~~g~L~vv~~~~~~~~~~~i~vw~l~~~~~-W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----- 328 (372)
.+|+||++++..... ...-++|.+|..++ |+++..+|.. +....++..++.||+.++.
T Consensus 157 ---~~~~iyv~GG~~~~~-~~~~~~~~yd~~~~~W~~~~~~p~~------------r~~~~~~~~~~~iyv~GG~~~~~~ 220 (318)
T 2woz_A 157 ---HNGMIYCLGGKTDDK-KCTNRVFIYNPKKGDWKDLAPMKTP------------RSMFGVAIHKGKIVIAGGVTEDGL 220 (318)
T ss_dssp ---ETTEEEEECCEESSS-CBCCCEEEEETTTTEEEEECCCSSC------------CBSCEEEEETTEEEEEEEEETTEE
T ss_pred ---ECCEEEEEcCCCCCC-CccceEEEEcCCCCEEEECCCCCCC------------cccceEEEECCEEEEEcCcCCCCc
Confidence 899999999864221 12235667777665 9999877632 1223345568889998753
Q ss_pred CCeEEEEECCCCceEECCCCCCCCCC
Q 017381 329 WPEILYYNVARRTWHWLPSCPSLPHK 354 (372)
Q Consensus 329 ~~~v~~yd~~~~~w~~v~~~~~~~~~ 354 (372)
...+.+||+++++|+.++.+|.++..
T Consensus 221 ~~~~~~yd~~~~~W~~~~~~p~~r~~ 246 (318)
T 2woz_A 221 SASVEAFDLKTNKWEVMTEFPQERSS 246 (318)
T ss_dssp EEEEEEEETTTCCEEECCCCSSCCBS
T ss_pred cceEEEEECCCCeEEECCCCCCcccc
Confidence 23588999999999999988876654
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.7e-14 Score=144.21 Aligned_cols=250 Identities=11% Similarity=0.014 Sum_probs=156.6
Q ss_pred cccccCCCCCeeee-cCCCCCCCCCceEEEEe-cCcEEEEecCC-----------CceEEEEeccccceeccCCCCCCCC
Q 017381 78 YPLYDSTHGTWRRL-SLPYSLLLPSAATLLSS-SKGLLCFSLPS-----------SSSFLVCNLVTLSSRTIDFPTYPFD 144 (372)
Q Consensus 78 ~~~~d~~~~~w~~l-~~~~~~~~~~~~~~~~s-~~Gll~~~~~~-----------~~~~~v~NP~t~~~~~lP~~~~~~~ 144 (372)
+..||+..++|..+ ++|. ........ .+|-|++.++. ...+.+|||.|++|..+++++.++.
T Consensus 168 ~~~~dp~~~~W~~~~~~P~-----~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~ 242 (656)
T 1k3i_A 168 YTAPQPGLGRWGPTIDLPI-----VPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHD 242 (656)
T ss_dssp CCCCCTTSCEEEEEEECSS-----CCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCC
T ss_pred cccCCCCCCeeeeeccCCC-----CceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCC
Confidence 45689999999976 3442 12222222 27755554321 1268899999999999988766554
Q ss_pred ceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCCccccccCCCCccccccCCCcccEEE-CCEEEEeeeC-C-----c
Q 017381 145 FELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFY-KGSLYFTTPE-P-----F 217 (372)
Q Consensus 145 ~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~-~G~~y~~~~~-~-----~ 217 (372)
..+.+.... .+-+|+++||... ..+++||+.+++|+... .+|. .+..+..+.+ +|++|.+++. . .
T Consensus 243 ~~~~~~~~~-~~g~lyv~GG~~~-~~v~~yd~~t~~W~~~~--~~~~----~R~~~s~~~~~dg~iyv~GG~~~~~~~~~ 314 (656)
T 1k3i_A 243 MFCPGISMD-GNGQIVVTGGNDA-KKTSLYDSSSDSWIPGP--DMQV----ARGYQSSATMSDGRVFTIGGSWSGGVFEK 314 (656)
T ss_dssp CSSCEEEEC-TTSCEEEECSSST-TCEEEEEGGGTEEEECC--CCSS----CCSSCEEEECTTSCEEEECCCCCSSSCCC
T ss_pred CccccccCC-CCCCEEEeCCCCC-CceEEecCcCCceeECC--CCCc----cccccceEEecCCeEEEEeCcccCCcccc
Confidence 433222211 1227899988543 37999999999999998 6664 2345667777 9999999872 1 4
Q ss_pred EEEEEecCCCeeeccC----CCCccccccCCCc-----------------------------------------------
Q 017381 218 SIVRFDLENGIWETPN----DANDHMTMMLPHE----------------------------------------------- 246 (372)
Q Consensus 218 ~i~~yD~~~~~w~~i~----~p~~~~~~~~p~~----------------------------------------------- 246 (372)
.+..||+.+++|+.+. .| ++..
T Consensus 315 ~~e~yd~~t~~W~~~~~~~~~p-------~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~ 387 (656)
T 1k3i_A 315 NGEVYSPSSKTWTSLPNAKVNP-------MLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGK 387 (656)
T ss_dssp CEEEEETTTTEEEEETTSCSGG-------GCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEE
T ss_pred cceEeCCCCCcceeCCCccccc-------cccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCc
Confidence 6899999999999852 12 1110
Q ss_pred ----------ccccceeeeccCCCeEEEEEeeecCC----ccceEEEEEEcCCCC-EEEEE--ecChHHHHHhhhhccCC
Q 017381 247 ----------LTFFRLVNDGEESNKLYLIGGVGRNG----ISTTMKLWELGCGGN-WIEVE--RVPEMMCRKFMSVCYHN 309 (372)
Q Consensus 247 ----------~~~~~lv~e~~~~g~L~vv~~~~~~~----~~~~i~vw~l~~~~~-W~~v~--~lp~~~~~~~~~~~~~~ 309 (372)
......+.-...+|+|+++++..... ......++.+|.... |+++. .||...
T Consensus 388 ~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R----------- 456 (656)
T 1k3i_A 388 RQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFAR----------- 456 (656)
T ss_dssp CEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCC-----------
T ss_pred cccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCc-----------
Confidence 00011110001489999999853111 111224555666655 99886 665321
Q ss_pred CceEEEEeeCCEEEEEeecC-----------CeEEEEECCCCceEECCCCCCCCCCCccc
Q 017381 310 YDHVYCFWHQGMICVCCYTW-----------PEILYYNVARRTWHWLPSCPSLPHKWSCG 358 (372)
Q Consensus 310 ~~~~~~~~~~~~i~~~~~~~-----------~~v~~yd~~~~~w~~v~~~~~~~~~~~~~ 358 (372)
.....++..+++||+.++.. ..+.+||+++++|+.++.+|.++.-+++.
T Consensus 457 ~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a 516 (656)
T 1k3i_A 457 TFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSIS 516 (656)
T ss_dssp BSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEE
T ss_pred ccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHh
Confidence 11222333377788887522 45899999999999999988887766544
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.1e-13 Score=136.83 Aligned_cols=213 Identities=8% Similarity=0.078 Sum_probs=139.6
Q ss_pred EecCcEEEEecC----CCceEEEEeccccceeccC-C-----CCCCCCceeEEEEeCCCCEEEEEEeecCC----CceEE
Q 017381 107 SSSKGLLCFSLP----SSSSFLVCNLVTLSSRTID-F-----PTYPFDFELLTLVSTPSGYKIFMLFAKSF----PNYAF 172 (372)
Q Consensus 107 ~s~~Gll~~~~~----~~~~~~v~NP~t~~~~~lP-~-----~~~~~~~~~~~~~~~~~~ykvv~~~~~~~----~~~~~ 172 (372)
++.++.|++.++ ..+.+++|||.+++|..++ + ++.++..+..+..... -+|+++||... ...++
T Consensus 394 ~~~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~--~~lyv~GG~~~~~~~~~dv~ 471 (695)
T 2zwa_A 394 DVAGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRN--NQLLLIGGRKAPHQGLSDNW 471 (695)
T ss_dssp EECSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTT--TEEEEECCBSSTTCBCCCCE
T ss_pred EEECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccC--CEEEEEcCCCCCCCccccEE
Confidence 336665655554 2357999999999999998 5 3444444444433101 27999998643 34899
Q ss_pred EEECCCCCccccccCCCCccccccCCCcccEEE-CCEEEEeeeCC--cEEEEEecCCCeeeccCCCCccccccCCCcccc
Q 017381 173 VYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFY-KGSLYFTTPEP--FSIVRFDLENGIWETPNDANDHMTMMLPHELTF 249 (372)
Q Consensus 173 vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~-~G~~y~~~~~~--~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~ 249 (372)
+||+.+++|+.+. .+|. .+..+.++.+ +|++|++++.. ..+.+||+.+++|+.+...+. +|..+..
T Consensus 472 ~yd~~t~~W~~~~--~~p~----~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~-----~p~~r~~ 540 (695)
T 2zwa_A 472 IFDMKTREWSMIK--SLSH----TRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDE-----FFQNSLV 540 (695)
T ss_dssp EEETTTTEEEECC--CCSB----CCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSG-----GGGSCCB
T ss_pred EEeCCCCcEEECC--CCCC----CcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCC-----CCCcccc
Confidence 9999999999998 6765 2345666775 99999998632 159999999999998753211 4444444
Q ss_pred cceeeeccCC---CeEEEEEeeecCC--ccceEEEEEEcCCCC-----EEEEEecChHHHHHhhhhccCCCceEEEEeeC
Q 017381 250 FRLVNDGEES---NKLYLIGGVGRNG--ISTTMKLWELGCGGN-----WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQ 319 (372)
Q Consensus 250 ~~lv~e~~~~---g~L~vv~~~~~~~--~~~~i~vw~l~~~~~-----W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~ 319 (372)
+..++ ++ |+||++||....+ ....+.+|.++.... |+++..+|.. .+....++..+
T Consensus 541 ~~a~v---~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~-----------~R~~~~~~~~~ 606 (695)
T 2zwa_A 541 SAGLE---FDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLF-----------QRYGSQIKYIT 606 (695)
T ss_dssp SCEEE---EETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGG-----------CCBSCEEEEEE
T ss_pred eeEEE---EeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCC-----------CcccceEEEeC
Confidence 44232 34 9999999864322 234566666644331 8988875421 11122334444
Q ss_pred -CEEEEEeec--------CCeEEEEECCCCceEECC
Q 017381 320 -GMICVCCYT--------WPEILYYNVARRTWHWLP 346 (372)
Q Consensus 320 -~~i~~~~~~--------~~~v~~yd~~~~~w~~v~ 346 (372)
+.||+.++. ...+.+||+++++|+.++
T Consensus 607 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~ 642 (695)
T 2zwa_A 607 PRKLLIVGGTSPSGLFDRTNSIISLDPLSETLTSIP 642 (695)
T ss_dssp TTEEEEECCBCSSCCCCTTTSEEEEETTTTEEEECC
T ss_pred CCEEEEECCccCCCCCCCCCeEEEEECCCCeEEEee
Confidence 889998753 346999999999999654
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.7e-12 Score=130.18 Aligned_cols=201 Identities=9% Similarity=0.034 Sum_probs=133.7
Q ss_pred CccccccCCCCCeeeecCC---CCCCCCCceEEEEec--CcEEEEecCC------CceEEEEeccccceeccCCCCCCCC
Q 017381 76 DQYPLYDSTHGTWRRLSLP---YSLLLPSAATLLSSS--KGLLCFSLPS------SSSFLVCNLVTLSSRTIDFPTYPFD 144 (372)
Q Consensus 76 ~~~~~~d~~~~~w~~l~~~---~~~~~~~~~~~~~s~--~Gll~~~~~~------~~~~~v~NP~t~~~~~lP~~~~~~~ 144 (372)
..+..||+..++|..++++ ..++..+..+..+.. +|-|++.++. .+.+++|||.+++|..+++++.++.
T Consensus 412 ~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~ 491 (695)
T 2zwa_A 412 NEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRF 491 (695)
T ss_dssp CCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCB
T ss_pred CcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcc
Confidence 3467799999999988733 123445555555666 7866665541 2478999999999999999887766
Q ss_pred ceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCCccccccCC---CCccccccCCCcccEEEC---CEEEEeeeC---
Q 017381 145 FELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDG---FPSMILSQSSHQEGVFYK---GSLYFTTPE--- 215 (372)
Q Consensus 145 ~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~~~~~~---~p~~~~~~~~~~~~v~~~---G~~y~~~~~--- 215 (372)
.+..+... .-+|+++||......+++||+.+++|+.+. . +|. .+..+.+++++ |++|++++.
T Consensus 492 ~h~~~~~~---~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~--~~g~~p~----~r~~~~a~v~~~~~~~iyv~GG~~~~ 562 (695)
T 2zwa_A 492 RHSACSLP---DGNVLILGGVTEGPAMLLYNVTEEIFKDVT--PKDEFFQ----NSLVSAGLEFDPVSKQGIILGGGFMD 562 (695)
T ss_dssp SCEEEECT---TSCEEEECCBCSSCSEEEEETTTTEEEECC--CSSGGGG----SCCBSCEEEEETTTTEEEEECCBCTT
T ss_pred cceEEEEc---CCEEEEECCCCCCCCEEEEECCCCceEEcc--CCCCCCC----cccceeEEEEeCCCCEEEEECCcCCC
Confidence 55544421 227899988654448999999999999887 3 222 22345556667 899999863
Q ss_pred ----CcEEEEEecCCCe------eeccCCCCccccccCC-CcccccceeeeccCC-CeEEEEEeeecCCc-cceEEEEEE
Q 017381 216 ----PFSIVRFDLENGI------WETPNDANDHMTMMLP-HELTFFRLVNDGEES-NKLYLIGGVGRNGI-STTMKLWEL 282 (372)
Q Consensus 216 ----~~~i~~yD~~~~~------w~~i~~p~~~~~~~~p-~~~~~~~lv~e~~~~-g~L~vv~~~~~~~~-~~~i~vw~l 282 (372)
...+.+||+.+++ |+.+. + +| ..+..+.+++ .+ |+||++||...... ...-+||.+
T Consensus 563 ~~~~~~~v~~yd~~~~~w~~~~~W~~~~-~-------~p~~~R~~~~~~~---~~~~~iyv~GG~~~~~~~~~~~~v~~y 631 (695)
T 2zwa_A 563 QTTVSDKAIIFKYDAENATEPITVIKKL-Q-------HPLFQRYGSQIKY---ITPRKLLIVGGTSPSGLFDRTNSIISL 631 (695)
T ss_dssp SSCBCCEEEEEEECTTCSSCCEEEEEEE-E-------CGGGCCBSCEEEE---EETTEEEEECCBCSSCCCCTTTSEEEE
T ss_pred CCeeeCcEEEEEccCCccccceEEEEcC-C-------CCCCCcccceEEE---eCCCEEEEECCccCCCCCCCCCeEEEE
Confidence 2468999999999 77653 1 22 3333444453 67 99999998542211 122345666
Q ss_pred cCCCC-EEEEEecChH
Q 017381 283 GCGGN-WIEVERVPEM 297 (372)
Q Consensus 283 ~~~~~-W~~v~~lp~~ 297 (372)
|..+. |+.+ .+|..
T Consensus 632 d~~t~~W~~~-~~p~~ 646 (695)
T 2zwa_A 632 DPLSETLTSI-PISRR 646 (695)
T ss_dssp ETTTTEEEEC-CCCHH
T ss_pred ECCCCeEEEe-ecccc
Confidence 66655 9943 45543
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=99.32 E-value=1.1e-10 Score=116.69 Aligned_cols=204 Identities=12% Similarity=0.068 Sum_probs=126.8
Q ss_pred ccccccCCCCCeeeec-CCCCCCCCCceEEEEecCcEEEEecC-CCceEEEEeccccceeccCCCCCCCCceeEEEEeCC
Q 017381 77 QYPLYDSTHGTWRRLS-LPYSLLLPSAATLLSSSKGLLCFSLP-SSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTP 154 (372)
Q Consensus 77 ~~~~~d~~~~~w~~l~-~~~~~~~~~~~~~~~s~~Gll~~~~~-~~~~~~v~NP~t~~~~~lP~~~~~~~~~~~~~~~~~ 154 (372)
....||+..++|..++ +|... ...........+|.|++.++ ....+.+|||.|++|..+++++.++..+..+...
T Consensus 220 ~~~~yd~~t~~w~~~~~~~~~~-~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~-- 296 (656)
T 1k3i_A 220 LTSSWDPSTGIVSDRTVTVTKH-DMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-- 296 (656)
T ss_dssp EEEEECTTTCCBCCCEEEECSC-CCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT--
T ss_pred EEEEEeCCCCcEEeCcccCCCC-CCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEec--
Confidence 3567999999998774 22111 11122234456786666654 4458999999999999999988776655444321
Q ss_pred CCEEEEEEeec-C---CCceEEEEECCCCCccccccC---CCCccc-------------cc-------------------
Q 017381 155 SGYKIFMLFAK-S---FPNYAFVYDSTDQSWSKFDID---GFPSMI-------------LS------------------- 195 (372)
Q Consensus 155 ~~ykvv~~~~~-~---~~~~~~vy~s~~~~W~~~~~~---~~p~~~-------------~~------------------- 195 (372)
+-+|+++||. . ....+++||+.+++|+.+... .++... +.
T Consensus 297 -dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd 375 (656)
T 1k3i_A 297 -DGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYY 375 (656)
T ss_dssp -TSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEE
T ss_pred -CCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeee
Confidence 1279999883 2 235899999999999886310 122100 00
Q ss_pred ---------------------cCCCcccEE---ECCEEEEeeeCC--------c---EEEEEecCCCeeeccC-CCCccc
Q 017381 196 ---------------------QSSHQEGVF---YKGSLYFTTPEP--------F---SIVRFDLENGIWETPN-DANDHM 239 (372)
Q Consensus 196 ---------------------~~~~~~~v~---~~G~~y~~~~~~--------~---~i~~yD~~~~~w~~i~-~p~~~~ 239 (372)
......++. .+|++|.+++.. . .+..||+.+++|..+. .+
T Consensus 376 ~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~---- 451 (656)
T 1k3i_A 376 TSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNG---- 451 (656)
T ss_dssp CSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTC----
T ss_pred cCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCC----
Confidence 000111222 389999998631 1 5889999999998763 23
Q ss_pred cccCCCcccccceeeeccCCCeEEEEEeeecC------CccceEEEEEEcCCCC-EEEEEecC
Q 017381 240 TMMLPHELTFFRLVNDGEESNKLYLIGGVGRN------GISTTMKLWELGCGGN-WIEVERVP 295 (372)
Q Consensus 240 ~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~------~~~~~i~vw~l~~~~~-W~~v~~lp 295 (372)
+|..+..+..+.. .+|+|+++++.... .....+++| |..++ |+++..++
T Consensus 452 ---mp~~R~~~~~~~l--~~g~i~v~GG~~~~~~~~~~~~~~~v~~y--dp~t~~W~~~~~~~ 507 (656)
T 1k3i_A 452 ---LYFARTFHTSVVL--PDGSTFITGGQRRGIPFEDSTPVFTPEIY--VPEQDTFYKQNPNS 507 (656)
T ss_dssp ---CSSCCBSCEEEEC--TTSCEEEECCBSBCCTTCCCSBCCCCEEE--EGGGTEEEECCCCS
T ss_pred ---CCCCcccCCeEEC--CCCCEEEECCcccCcCcCCCCcccceEEE--cCCCCceeecCCCC
Confidence 6766655554431 39999999985321 112345555 44444 99887665
|
| >1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E | Back alignment and structure |
|---|
Probab=99.09 E-value=6.2e-11 Score=76.99 Aligned_cols=44 Identities=32% Similarity=0.511 Sum_probs=38.4
Q ss_pred ChhhhcCCCHHHHHHHHccCCchhhhHHhhchhhhhhcccChhh
Q 017381 9 DPAIWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSF 52 (372)
Q Consensus 9 ~~~~~~~LP~dll~~IL~rLp~~~l~r~r~Vck~W~~~i~~~~F 52 (372)
.+..|..||+|++.+||++||.+++.++++|||+|+.++.++.|
T Consensus 5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~l 48 (53)
T 1fs1_A 5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 48 (53)
T ss_dssp ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGG
T ss_pred CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHH
Confidence 34578999999999999999999999999999999999988765
|
| >2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A | Back alignment and structure |
|---|
Probab=98.89 E-value=3.7e-10 Score=99.53 Aligned_cols=52 Identities=25% Similarity=0.293 Sum_probs=46.4
Q ss_pred CChhhhcCCCHHHHHHHHccCCchhhh-HHhhchhhhhhcccChhhhcccccc
Q 017381 8 MDPAIWSRLPEDLLDHVLSFLPPKMLL-KLRSTCKHFNSLLFSPSFLSKTKCS 59 (372)
Q Consensus 8 ~~~~~~~~LP~dll~~IL~rLp~~~l~-r~r~Vck~W~~~i~~~~F~~~~~~~ 59 (372)
++...+..||+||+.+||++||+++|+ |+++|||+|+++++++.|-+.+..+
T Consensus 46 ~~~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~ 98 (297)
T 2e31_A 46 EAVEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQ 98 (297)
T ss_dssp -CCCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHH
T ss_pred ccccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhc
Confidence 344578899999999999999999999 9999999999999999998887654
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=98.83 E-value=4.6e-06 Score=78.92 Aligned_cols=40 Identities=10% Similarity=0.280 Sum_probs=37.3
Q ss_pred hhhhcCCCHHHHHHHHccCCchhhhHHhhchhhhhhcccC
Q 017381 10 PAIWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFS 49 (372)
Q Consensus 10 ~~~~~~LP~dll~~IL~rLp~~~l~r~r~Vck~W~~~i~~ 49 (372)
...++.||+|++.+||+.||+++|++++.|||.|+.++.+
T Consensus 12 ~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~ 51 (464)
T 3v7d_B 12 RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK 51 (464)
T ss_dssp CCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTT
T ss_pred cCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcC
Confidence 3468899999999999999999999999999999999987
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=98.82 E-value=1e-06 Score=83.24 Aligned_cols=202 Identities=17% Similarity=0.112 Sum_probs=101.1
Q ss_pred hhhcCCCHHHHHHHHccCCchhhhHHhhchhhhhhcccChhhhcccccc-CCCCceEEE-EeCC--CC-CCcc-cccc--
Q 017381 11 AIWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSFLSKTKCS-SSAFSCFIL-LSHP--QC-YDQY-PLYD-- 82 (372)
Q Consensus 11 ~~~~~LP~dll~~IL~rLp~~~l~r~r~Vck~W~~~i~~~~F~~~~~~~-~~~~~~~~~-~~~~--~~-~~~~-~~~d-- 82 (372)
..++.||+|++.+||+.|++++|+++++|||+|+.++.++.+-+..... ....+...- .... .. ...+ ..|-
T Consensus 17 d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wk~~~~~~ 96 (445)
T 2ovr_B 17 DFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQ 96 (445)
T ss_dssp STTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTTCCSCCCCCC--CCSSCCCCCHHHHHHHHH
T ss_pred ChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhheeecccccccccccceecCCCccCCcHHHHHhhh
Confidence 4678999999999999999999999999999999999887554432211 100000000 0000 00 0000 0000
Q ss_pred -CCCCCeeeecC--CCCCC-CCC-ceEEEEecCcEEEEecCCCceEEEEeccccceeccCCCCCCCCceeEEEEeCCCCE
Q 017381 83 -STHGTWRRLSL--PYSLL-LPS-AATLLSSSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGY 157 (372)
Q Consensus 83 -~~~~~w~~l~~--~~~~~-~~~-~~~~~~s~~Gll~~~~~~~~~~~v~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~y 157 (372)
.....|..-.. ...+. +.. ....+...+.+++... .++.+.+||..+++....-... ......+.+. +
T Consensus 97 ~~~~~~w~~~~~~~~~~l~~h~~~v~~~~~~~g~~l~sg~-~dg~i~vwd~~~~~~~~~~~~h-~~~v~~~~~~--~--- 169 (445)
T 2ovr_B 97 HRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGS-DDNTLKVWSAVTGKCLRTLVGH-TGGVWSSQMR--D--- 169 (445)
T ss_dssp HHHHHHHHHSCCCCCEEEECSTTSCEEEEEEETTEEEEEE-TTSCEEEEETTTCCEEEECCCC-SSCEEEEEEE--T---
T ss_pred hhhhhcccCCCcceeEEecccCCCcEEEEEEcCCEEEEEE-CCCcEEEEECCCCcEEEEEcCC-CCCEEEEEec--C---
Confidence 00011221111 00111 111 1233444444554443 4689999999888743221110 1111223333 1
Q ss_pred EEEEEeecCCCceEEEEECCCCCccccccCCCCccccccCCCcccEEECCEEEEeeeCCcEEEEEecCCCee
Q 017381 158 KIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENGIW 229 (372)
Q Consensus 158 kvv~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~~y~~~~~~~~i~~yD~~~~~w 229 (372)
.+++.++ ....+.+||..++.-...- .. .......+..++...+.++....+..||+.+.+-
T Consensus 170 ~~l~s~~--~dg~i~vwd~~~~~~~~~~----~~----h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~ 231 (445)
T 2ovr_B 170 NIIISGS--TDRTLKVWNAETGECIHTL----YG----HTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQC 231 (445)
T ss_dssp TEEEEEE--TTSCEEEEETTTTEEEEEE----CC----CSSCEEEEEEETTEEEEEETTSEEEEEESSSCCE
T ss_pred CEEEEEe--CCCeEEEEECCcCcEEEEE----CC----CCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcE
Confidence 1334333 3357889998876422111 11 0111224445566566666666799999887644
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=98.71 E-value=4.2e-07 Score=85.69 Aligned_cols=44 Identities=20% Similarity=0.385 Sum_probs=39.0
Q ss_pred CChhhhcCCCHH----HHHHHHccCCchhhhHHhhchhhhhhcccChh
Q 017381 8 MDPAIWSRLPED----LLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPS 51 (372)
Q Consensus 8 ~~~~~~~~LP~d----ll~~IL~rLp~~~l~r~r~Vck~W~~~i~~~~ 51 (372)
+....++.||+| ++.+||+.|++.+|.++++|||+|+.++.++.
T Consensus 6 ~~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~ 53 (435)
T 1p22_A 6 LQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGM 53 (435)
T ss_dssp SCCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTT
T ss_pred hhcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChH
Confidence 344567899999 99999999999999999999999999987654
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.83 E-value=5.3e-06 Score=72.36 Aligned_cols=45 Identities=33% Similarity=0.431 Sum_probs=40.2
Q ss_pred hhhcCCCHHHHHHHHccCCchhhhHHhhchhhhhhcccChhhhcc
Q 017381 11 AIWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSFLSK 55 (372)
Q Consensus 11 ~~~~~LP~dll~~IL~rLp~~~l~r~r~Vck~W~~~i~~~~F~~~ 55 (372)
..+..||+|++.+||+.|++++++++.+|||.||.+.+++..=+.
T Consensus 3 ~~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~ 47 (312)
T 3l2o_B 3 STLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRY 47 (312)
T ss_dssp CHHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHH
T ss_pred chhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHH
Confidence 457889999999999999999999999999999999998765433
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=97.60 E-value=2e-05 Score=71.35 Aligned_cols=44 Identities=32% Similarity=0.511 Sum_probs=38.7
Q ss_pred ChhhhcCCCHHHHHHHHccCCchhhhHHhhchhhhhhcccChhh
Q 017381 9 DPAIWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSF 52 (372)
Q Consensus 9 ~~~~~~~LP~dll~~IL~rLp~~~l~r~r~Vck~W~~~i~~~~F 52 (372)
+...|+.||+|++.+||.+|+..++.+++.|||+|+.++.++..
T Consensus 5 ~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~ 48 (336)
T 2ast_B 5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 48 (336)
T ss_dssp --CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTT
T ss_pred ccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchh
Confidence 34578999999999999999999999999999999999876653
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=97.25 E-value=9.8e-05 Score=72.28 Aligned_cols=39 Identities=31% Similarity=0.542 Sum_probs=29.4
Q ss_pred CChhhhcCCCHHHHHHHHccCC-chhhhHHhhchhhhhhc
Q 017381 8 MDPAIWSRLPEDLLDHVLSFLP-PKMLLKLRSTCKHFNSL 46 (372)
Q Consensus 8 ~~~~~~~~LP~dll~~IL~rLp-~~~l~r~r~Vck~W~~~ 46 (372)
|+...|+.||+|++.+||++|| .+++.+++.|||+|+.+
T Consensus 1 ~~~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 1 MQKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp ---------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred CcccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence 3456799999999999999999 99999999999999987
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.44 Score=42.38 Aligned_cols=241 Identities=14% Similarity=0.119 Sum_probs=120.8
Q ss_pred EEEEeCCCC---CCccccccCCCCCeeeec-CC-CCCCCCCceEEEEecCcEEEEecCCCceEEEEeccccce-eccCCC
Q 017381 66 FILLSHPQC---YDQYPLYDSTHGTWRRLS-LP-YSLLLPSAATLLSSSKGLLCFSLPSSSSFLVCNLVTLSS-RTIDFP 139 (372)
Q Consensus 66 ~~~~~~~~~---~~~~~~~d~~~~~w~~l~-~~-~~~~~~~~~~~~~s~~Gll~~~~~~~~~~~v~NP~t~~~-~~lP~~ 139 (372)
+|+++.+.. ...+.++|+..++...-- .. ...+......-+...++.+++.....+.+.++|+.|++. ..++..
T Consensus 4 ~~v~neg~~g~~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~ 83 (328)
T 3dsm_A 4 LFITNEGNFQYSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRITGF 83 (328)
T ss_dssp EEEEECCCTTSCCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEECC
T ss_pred EEEEecCCCCCCCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcCCC
Confidence 555554421 235677888776654210 00 000111111122334565555544457899999999886 556432
Q ss_pred CCCCCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCCccccccCCCCccccccCCCcccEEECCEEEEeee-CCcE
Q 017381 140 TYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTP-EPFS 218 (372)
Q Consensus 140 ~~~~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~~y~~~~-~~~~ 218 (372)
. ....+++++. . ++++... ....+.++|..+++-...- ......-........++-+|.+|.... ....
T Consensus 84 ~---~p~~i~~~~~--g-~lyv~~~--~~~~v~~iD~~t~~~~~~i--~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~ 153 (328)
T 3dsm_A 84 T---SPRYIHFLSD--E-KAYVTQI--WDYRIFIINPKTYEITGYI--ECPDMDMESGSTEQMVQYGKYVYVNCWSYQNR 153 (328)
T ss_dssp S---SEEEEEEEET--T-EEEEEEB--SCSEEEEEETTTTEEEEEE--ECTTCCTTTCBCCCEEEETTEEEEEECTTCCE
T ss_pred C---CCcEEEEeCC--C-eEEEEEC--CCCeEEEEECCCCeEEEEE--EcCCccccCCCcceEEEECCEEEEEcCCCCCE
Confidence 1 1234555433 3 6766552 2468899999887532111 111100000011223346788888765 3568
Q ss_pred EEEEecCCCeeec-cCCCCccccccCCCcccccceeeeccCCCeEEEEEeeecCCcc---ceEEEEEEcCCCC-EEEEEe
Q 017381 219 IVRFDLENGIWET-PNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGIS---TTMKLWELGCGGN-WIEVER 293 (372)
Q Consensus 219 i~~yD~~~~~w~~-i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~~~~---~~i~vw~l~~~~~-W~~v~~ 293 (372)
|.++|+.+.+... +.... .|. .+... -+|+++++......... ..-.|+.+|..+. ..+.-.
T Consensus 154 v~viD~~t~~~~~~i~~g~------~p~-----~i~~~--~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~ 220 (328)
T 3dsm_A 154 ILKIDTETDKVVDELTIGI------QPT-----SLVMD--KYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFK 220 (328)
T ss_dssp EEEEETTTTEEEEEEECSS------CBC-----CCEEC--TTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEE
T ss_pred EEEEECCCCeEEEEEEcCC------Ccc-----ceEEc--CCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEe
Confidence 9999999876543 22110 222 22223 57999888642100000 0124555555432 333223
Q ss_pred cChHHHHHhhhhccCCCceEEEEe-eCCEEEEEeecCCeEEEEECCCCceE
Q 017381 294 VPEMMCRKFMSVCYHNYDHVYCFW-HQGMICVCCYTWPEILYYNVARRTWH 343 (372)
Q Consensus 294 lp~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~v~~yd~~~~~w~ 343 (372)
++.. ....-.++. +++.+|+... .|.++|+++++..
T Consensus 221 ~~~g-----------~~p~~la~~~d~~~lyv~~~---~v~~~d~~t~~~~ 257 (328)
T 3dsm_A 221 FKLG-----------DWPSEVQLNGTRDTLYWINN---DIWRMPVEADRVP 257 (328)
T ss_dssp CCTT-----------CCCEEEEECTTSCEEEEESS---SEEEEETTCSSCC
T ss_pred cCCC-----------CCceeEEEecCCCEEEEEcc---EEEEEECCCCcee
Confidence 3211 001122333 4677888753 8999999998864
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.56 Score=41.15 Aligned_cols=190 Identities=11% Similarity=0.043 Sum_probs=97.6
Q ss_pred cEEEEecCCCceEEEEeccccceeccCCCCCCCCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCCccccccCCCC
Q 017381 111 GLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFP 190 (372)
Q Consensus 111 Gll~~~~~~~~~~~v~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p 190 (372)
+.+++.....+.+.+||+.+++....-..+. ....+++.+.+. .+++... ....+.+||..++.-.... +.
T Consensus 10 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~s~dg~--~l~~~~~--~~~~i~~~d~~~~~~~~~~---~~ 80 (331)
T 3u4y_A 10 NFGIVVEQHLRRISFFSTDTLEILNQITLGY--DFVDTAITSDCS--NVVVTSD--FCQTLVQIETQLEPPKVVA---IQ 80 (331)
T ss_dssp CEEEEEEGGGTEEEEEETTTCCEEEEEECCC--CEEEEEECSSSC--EEEEEES--TTCEEEEEECSSSSCEEEE---EE
T ss_pred CEEEEEecCCCeEEEEeCcccceeeeEEccC--CcceEEEcCCCC--EEEEEeC--CCCeEEEEECCCCceeEEe---cc
Confidence 3444444345789999999998754433221 112444443332 4454443 2348899999887641111 01
Q ss_pred ccccccCCCcccEEE--CCE-EEEeeeCC-c--EEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCe-EE
Q 017381 191 SMILSQSSHQEGVFY--KGS-LYFTTPEP-F--SIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNK-LY 263 (372)
Q Consensus 191 ~~~~~~~~~~~~v~~--~G~-~y~~~~~~-~--~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~-L~ 263 (372)
. ......++.+ +|. +| ..... . .|..||+.+.+..... + ..... ..+... -+|+ |+
T Consensus 81 ~----~~~~~~~~~~s~dg~~l~-~~~~~~~~~~i~v~d~~~~~~~~~~-~-------~~~~~--~~~~~s--pdg~~l~ 143 (331)
T 3u4y_A 81 E----GQSSMADVDITPDDQFAV-TVTGLNHPFNMQSYSFLKNKFISTI-P-------IPYDA--VGIAIS--PNGNGLI 143 (331)
T ss_dssp E----CSSCCCCEEECTTSSEEE-ECCCSSSSCEEEEEETTTTEEEEEE-E-------CCTTE--EEEEEC--TTSSCEE
T ss_pred c----CCCCccceEECCCCCEEE-EecCCCCcccEEEEECCCCCeEEEE-E-------CCCCc--cceEEC--CCCCEEE
Confidence 1 0011221333 454 55 44333 2 7999999877654321 1 11111 122212 4676 66
Q ss_pred EEEeeecCCccce-EEEEEEcCCCCEEEE--EecChHHHHHhhhhccCCCceEEEEe-eCCEEEEEeecCCeEEEEECCC
Q 017381 264 LIGGVGRNGISTT-MKLWELGCGGNWIEV--ERVPEMMCRKFMSVCYHNYDHVYCFW-HQGMICVCCYTWPEILYYNVAR 339 (372)
Q Consensus 264 vv~~~~~~~~~~~-i~vw~l~~~~~W~~v--~~lp~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~v~~yd~~~ 339 (372)
+... .... +.+|.++..+.-... ..++.. .......+. .+..+|+.....+.|.+||+++
T Consensus 144 ~~~~-----~~~~~i~~~~~~~~g~~~~~~~~~~~~~-----------~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~ 207 (331)
T 3u4y_A 144 LIDR-----SSANTVRRFKIDADGVLFDTGQEFISGG-----------TRPFNITFTPDGNFAFVANLIGNSIGILETQN 207 (331)
T ss_dssp EEEE-----TTTTEEEEEEECTTCCEEEEEEEEECSS-----------SSEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEec-----CCCceEEEEEECCCCcEeecCCccccCC-----------CCccceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence 6654 1245 899999866653222 112100 011112333 3446888776677899999998
Q ss_pred Cce
Q 017381 340 RTW 342 (372)
Q Consensus 340 ~~w 342 (372)
++.
T Consensus 208 ~~~ 210 (331)
T 3u4y_A 208 PEN 210 (331)
T ss_dssp TTS
T ss_pred Ccc
Confidence 875
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0018 Score=63.15 Aligned_cols=33 Identities=15% Similarity=0.430 Sum_probs=31.4
Q ss_pred cCCCHHHHHHHHccC-CchhhhHHhhchhhhhhc
Q 017381 14 SRLPEDLLDHVLSFL-PPKMLLKLRSTCKHFNSL 46 (372)
Q Consensus 14 ~~LP~dll~~IL~rL-p~~~l~r~r~Vck~W~~~ 46 (372)
+.||+|++.+||++| |.+++.+++.|||+|+.+
T Consensus 14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~ 47 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKI 47 (592)
T ss_dssp CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHH
T ss_pred CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHh
Confidence 579999999999999 899999999999999987
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.37 Score=42.84 Aligned_cols=207 Identities=9% Similarity=0.131 Sum_probs=102.2
Q ss_pred ecCc-EEEEecCCCceEEEEecc-ccceeccCCCCC------C----CCceeEEEEeCCCCEEEEEEeecCCCceEEEEE
Q 017381 108 SSKG-LLCFSLPSSSSFLVCNLV-TLSSRTIDFPTY------P----FDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYD 175 (372)
Q Consensus 108 s~~G-ll~~~~~~~~~~~v~NP~-t~~~~~lP~~~~------~----~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~ 175 (372)
+-+| .++......+.+.+|+.. +++...+..... . .....+++.+.+. +++... ....+.+|+
T Consensus 94 spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~---l~v~~~--~~~~v~~~~ 168 (347)
T 3hfq_A 94 DEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR---LAVIDL--GSDKVYVYN 168 (347)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC---EEEEET--TTTEEEEEE
T ss_pred CCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc---EEEEeC--CCCEEEEEE
Confidence 4455 555555345778888874 333332221100 0 0112344444332 444332 335788999
Q ss_pred CC-CCCccccccCCCCccccccCCCcccEEE--CCE-EEEeeeCCcEEEEEecC--CCeeeccCCCCccccccCCCc---
Q 017381 176 ST-DQSWSKFDIDGFPSMILSQSSHQEGVFY--KGS-LYFTTPEPFSIVRFDLE--NGIWETPNDANDHMTMMLPHE--- 246 (372)
Q Consensus 176 s~-~~~W~~~~~~~~p~~~~~~~~~~~~v~~--~G~-~y~~~~~~~~i~~yD~~--~~~w~~i~~p~~~~~~~~p~~--- 246 (372)
.. +++.........+. . .....+.+ +|+ +|+.......+..||+. +.++..+..-. . .|..
T Consensus 169 ~~~~g~~~~~~~~~~~~----g-~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~----~-~~~~~~~ 238 (347)
T 3hfq_A 169 VSDAGQLSEQSVLTMEA----G-FGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVK----T-IPADYTA 238 (347)
T ss_dssp ECTTSCEEEEEEEECCT----T-CCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEE----S-SCTTCCS
T ss_pred ECCCCcEEEeeeEEcCC----C-CCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeee----e-cCCCCCC
Confidence 87 56554332000111 0 01112333 566 66655555567777765 45554321000 0 2221
Q ss_pred -ccccceeeeccCCCe-EEEEEeeecCCccceEEEEEEcCCCCEEEEEecChHHHHHhhhhccCCCceEEEEe-eCCEEE
Q 017381 247 -LTFFRLVNDGEESNK-LYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFW-HQGMIC 323 (372)
Q Consensus 247 -~~~~~lv~e~~~~g~-L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~-~~~~i~ 323 (372)
.....+... -+|+ ||+... ....+.+|.++..+.++.+..++..- ....-.++. ++..+|
T Consensus 239 ~~~~~~i~~s--pdG~~l~v~~~-----~~~~v~v~~~~~~g~~~~~~~~~~~~----------~~~~~~~~spdg~~l~ 301 (347)
T 3hfq_A 239 HNGAAAIRLS--HDGHFLYVSNR-----GYNTLAVFAVTADGHLTLIQQISTEG----------DFPRDFDLDPTEAFVV 301 (347)
T ss_dssp CCEEEEEEEC--TTSCEEEEEEE-----TTTEEEEEEECGGGCEEEEEEEECSS----------SCCCEEEECTTSSEEE
T ss_pred CCcceeEEEC--CCCCEEEEEeC-----CCCEEEEEEECCCCcEEEeEEEecCC----------CCcCeEEECCCCCEEE
Confidence 111122212 5777 555543 23679999997655677666654210 001122333 455688
Q ss_pred EEeecCCeEEEE--ECCCCceEECC
Q 017381 324 VCCYTWPEILYY--NVARRTWHWLP 346 (372)
Q Consensus 324 ~~~~~~~~v~~y--d~~~~~w~~v~ 346 (372)
+.....+.+.+| |.++++.+.+.
T Consensus 302 v~~~~~~~v~v~~~d~~tg~l~~~~ 326 (347)
T 3hfq_A 302 VVNQNTDNATLYARDLTSGKLSLLQ 326 (347)
T ss_dssp EEETTTTEEEEEEECTTTCCEEEEE
T ss_pred EEEcCCCcEEEEEEeCCCCeEEecc
Confidence 877666778888 77888887654
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=95.68 E-value=0.81 Score=39.34 Aligned_cols=151 Identities=11% Similarity=-0.062 Sum_probs=87.1
Q ss_pred EEEEEeecCCCceEEEEECCCCCccccccCCCCccccccCCCccc-EEECCEEEEeeeCCcEEEEEecCCCeee-ccCCC
Q 017381 158 KIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEG-VFYKGSLYFTTPEPFSIVRFDLENGIWE-TPNDA 235 (372)
Q Consensus 158 kvv~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~-v~~~G~~y~~~~~~~~i~~yD~~~~~w~-~i~~p 235 (372)
.++...+......+.++|.++++=...- .++. .....+ +..++.+|.++.....+.+||+++.+-. .+.
T Consensus 54 ~LyestG~~g~S~v~~vD~~Tgkv~~~~--~l~~-----~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~-- 124 (262)
T 3nol_A 54 YFYESTGLNGRSSIRKVDIESGKTLQQI--ELGK-----RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFN-- 124 (262)
T ss_dssp EEEEEEEETTEEEEEEECTTTCCEEEEE--ECCT-----TCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEE--
T ss_pred EEEEECCCCCCceEEEEECCCCcEEEEE--ecCC-----ccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEE--
Confidence 6777666555678999999998643222 2222 122233 4557799999988888999999875543 332
Q ss_pred CccccccCCCcccccceeeeccCCCeEEEEEeeecCCccceEEEEEEcCCCCEEEEEecChHHHHHhhhhccCCCceEEE
Q 017381 236 NDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYC 315 (372)
Q Consensus 236 ~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~~~ 315 (372)
.+. ....+.. -+++|++..+. . .|+.+|..+. ..+.+++... .+..+...+...+
T Consensus 125 -------~~~--eG~glt~---dg~~L~~SdGs------~--~i~~iDp~T~-~v~~~I~V~~----~g~~~~~lNELe~ 179 (262)
T 3nol_A 125 -------YDG--EGWGLTH---NDQYLIMSDGT------P--VLRFLDPESL-TPVRTITVTA----HGEELPELNELEW 179 (262)
T ss_dssp -------CSS--CCCCEEE---CSSCEEECCSS------S--EEEEECTTTC-SEEEEEECEE----TTEECCCEEEEEE
T ss_pred -------CCC--CceEEec---CCCEEEEECCC------C--eEEEEcCCCC-eEEEEEEecc----CCccccccceeEE
Confidence 222 3344542 35567776541 2 4777776542 1222222110 0000001122333
Q ss_pred EeeCCEEEEEeecCCeEEEEECCCCceEE
Q 017381 316 FWHQGMICVCCYTWPEILYYNVARRTWHW 344 (372)
Q Consensus 316 ~~~~~~i~~~~~~~~~v~~yd~~~~~w~~ 344 (372)
.++.||+.....+.|.+-|+++++-..
T Consensus 180 --~~G~lyan~w~~~~I~vIDp~tG~V~~ 206 (262)
T 3nol_A 180 --VDGEIFANVWQTNKIVRIDPETGKVTG 206 (262)
T ss_dssp --ETTEEEEEETTSSEEEEECTTTCBEEE
T ss_pred --ECCEEEEEEccCCeEEEEECCCCcEEE
Confidence 367899888778899999999986643
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=95.49 E-value=1 Score=38.31 Aligned_cols=151 Identities=13% Similarity=0.091 Sum_probs=88.2
Q ss_pred EEEEEeecCCCceEEEEECCCCCccccccCCCCccccccCCCccc-EEECCEEEEeeeCCcEEEEEecCCCeee-ccCCC
Q 017381 158 KIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEG-VFYKGSLYFTTPEPFSIVRFDLENGIWE-TPNDA 235 (372)
Q Consensus 158 kvv~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~-v~~~G~~y~~~~~~~~i~~yD~~~~~w~-~i~~p 235 (372)
.++...+......+.++|.++++=...- .++. .....+ +..++++|.++.....+.+||.++.+-. .+.
T Consensus 32 ~LyestG~~g~S~v~~vD~~tgkv~~~~--~l~~-----~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~-- 102 (243)
T 3mbr_X 32 HLYESTGETGRSSVRKVDLETGRILQRA--EVPP-----PYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFR-- 102 (243)
T ss_dssp EEEEEECCTTSCEEEEEETTTCCEEEEE--ECCT-----TCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEE--
T ss_pred EEEEECCCCCCceEEEEECCCCCEEEEE--eCCC-----CcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEe--
Confidence 6777666556678999999998543332 2332 122233 4567899999988888999999876543 222
Q ss_pred CccccccCCCcccccceeeeccCCCeEEEEEeeecCCccceEEEEEEcCCCCEEEEEecChHHHHHhhhhccCCCceEEE
Q 017381 236 NDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYC 315 (372)
Q Consensus 236 ~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~~~ 315 (372)
.+ .....+.. -+++|++..+ .. .|+.+|..+. ..+.+++... . +..+.....+.
T Consensus 103 -------~~--~~Gwglt~---dg~~L~vSdg------s~--~l~~iDp~t~-~~~~~I~V~~--~--g~~~~~lNeLe- 156 (243)
T 3mbr_X 103 -------YP--GEGWALTS---DDSHLYMSDG------TA--VIRKLDPDTL-QQVGSIKVTA--G--GRPLDNLNELE- 156 (243)
T ss_dssp -------CS--SCCCEEEE---CSSCEEEECS------SS--EEEEECTTTC-CEEEEEECEE--T--TEECCCEEEEE-
T ss_pred -------CC--CCceEEee---CCCEEEEECC------CC--eEEEEeCCCC-eEEEEEEEcc--C--CcccccceeeE-
Confidence 22 23345552 4667888764 12 4666675542 2222222110 0 00000112222
Q ss_pred EeeCCEEEEEeecCCeEEEEECCCCceEE
Q 017381 316 FWHQGMICVCCYTWPEILYYNVARRTWHW 344 (372)
Q Consensus 316 ~~~~~~i~~~~~~~~~v~~yd~~~~~w~~ 344 (372)
..++.||......+.|.+-|+++++-..
T Consensus 157 -~~~G~lyanvw~s~~I~vIDp~tG~V~~ 184 (243)
T 3mbr_X 157 -WVNGELLANVWLTSRIARIDPASGKVVA 184 (243)
T ss_dssp -EETTEEEEEETTTTEEEEECTTTCBEEE
T ss_pred -EeCCEEEEEECCCCeEEEEECCCCCEEE
Confidence 3477899877677899999999986543
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=95.34 E-value=1.4 Score=39.02 Aligned_cols=180 Identities=9% Similarity=0.031 Sum_probs=95.2
Q ss_pred CceEEEEeccccceec-cCCC--CCCC--CceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCCcc-ccccCCCCccc
Q 017381 120 SSSFLVCNLVTLSSRT-IDFP--TYPF--DFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWS-KFDIDGFPSMI 193 (372)
Q Consensus 120 ~~~~~v~NP~t~~~~~-lP~~--~~~~--~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~-~~~~~~~p~~~ 193 (372)
.+.+.++||.|++... +... .... ....+.++. . ++++... ....+.++|..+++-. .+. ...
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~---~-~lyv~~~--~~~~v~viD~~t~~~~~~i~--~~~--- 84 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRD---G-IGWIVVN--NSHVIFAIDINTFKEVGRIT--GFT--- 84 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEET---T-EEEEEEG--GGTEEEEEETTTCCEEEEEE--CCS---
T ss_pred CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEEC---C-EEEEEEc--CCCEEEEEECcccEEEEEcC--CCC---
Confidence 4689999999998653 2100 1111 112333332 2 5665543 2357899999887542 122 110
Q ss_pred cccCCCcccEE-ECCEEEEeeeCCcEEEEEecCCCeeec-cCCCCccccccCCCc---c-cccceeeeccCCCeEEEEEe
Q 017381 194 LSQSSHQEGVF-YKGSLYFTTPEPFSIVRFDLENGIWET-PNDANDHMTMMLPHE---L-TFFRLVNDGEESNKLYLIGG 267 (372)
Q Consensus 194 ~~~~~~~~~v~-~~G~~y~~~~~~~~i~~yD~~~~~w~~-i~~p~~~~~~~~p~~---~-~~~~lv~e~~~~g~L~vv~~ 267 (372)
.....++ -+|++|+.......|.++|+.+.+... +. .+.. . .-..++. .+++||+...
T Consensus 85 ----~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~---------~g~~~~~~~~p~~i~~---~~~~lyv~~~ 148 (328)
T 3dsm_A 85 ----SPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIE---------CPDMDMESGSTEQMVQ---YGKYVYVNCW 148 (328)
T ss_dssp ----SEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEE---------CTTCCTTTCBCCCEEE---ETTEEEEEEC
T ss_pred ----CCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEE---------cCCccccCCCcceEEE---ECCEEEEEcC
Confidence 1111233 588998877455679999999876542 22 1110 0 1123442 5889998853
Q ss_pred eecCCccceEEEEEEcCCCCEEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeecC----------CeEEEEEC
Q 017381 268 VGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTW----------PEILYYNV 337 (372)
Q Consensus 268 ~~~~~~~~~i~vw~l~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----------~~v~~yd~ 337 (372)
+....+.++.++ .++....-..... .. -..+..++.+|+..... +.|.++|+
T Consensus 149 ----~~~~~v~viD~~-t~~~~~~i~~g~~------------p~-~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~ 210 (328)
T 3dsm_A 149 ----SYQNRILKIDTE-TDKVVDELTIGIQ------------PT-SLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDA 210 (328)
T ss_dssp ----TTCCEEEEEETT-TTEEEEEEECSSC------------BC-CCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEET
T ss_pred ----CCCCEEEEEECC-CCeEEEEEEcCCC------------cc-ceEEcCCCCEEEEECCCccCCccccCCceEEEEEC
Confidence 112455666442 1222221111100 01 11334456778776543 57999999
Q ss_pred CCCceEE
Q 017381 338 ARRTWHW 344 (372)
Q Consensus 338 ~~~~w~~ 344 (372)
++++..+
T Consensus 211 ~t~~v~~ 217 (328)
T 3dsm_A 211 ETFTVEK 217 (328)
T ss_dssp TTTEEEE
T ss_pred CCCeEEE
Confidence 9987753
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=95.13 E-value=0.98 Score=39.49 Aligned_cols=189 Identities=9% Similarity=0.053 Sum_probs=87.6
Q ss_pred CceEEEEecc-ccceeccCCCCCCCCceeEEEEeCCCCEEEEEEeecCCCceEEEEECC--CCCccccccCCCCcccccc
Q 017381 120 SSSFLVCNLV-TLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDST--DQSWSKFDIDGFPSMILSQ 196 (372)
Q Consensus 120 ~~~~~v~NP~-t~~~~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~--~~~W~~~~~~~~p~~~~~~ 196 (372)
++.+.+|+.. +++...+...+.......+++.+.+. .+++... ....+.+|+.. +++++... .++. .
T Consensus 14 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~--~~~~v~~~~~~~~~~~~~~~~--~~~~---~- 83 (343)
T 1ri6_A 14 SQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKR--YLYVGVR--PEFRVLAYRIAPDDGALTFAA--ESAL---P- 83 (343)
T ss_dssp GTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSS--EEEEEET--TTTEEEEEEECTTTCCEEEEE--EEEC---S-
T ss_pred CCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCC--EEEEeec--CCCeEEEEEecCCCCceeecc--cccc---C-
Confidence 4677777763 44433332211111222344543322 3444332 22577888776 77777654 2221 0
Q ss_pred CCCcccEEE--CCE-EEEeeeCCcEEEEEecCCCe-eeccCCCCccccccCCCcccccceeeeccCCCe-EEEEEeeecC
Q 017381 197 SSHQEGVFY--KGS-LYFTTPEPFSIVRFDLENGI-WETPNDANDHMTMMLPHELTFFRLVNDGEESNK-LYLIGGVGRN 271 (372)
Q Consensus 197 ~~~~~~v~~--~G~-~y~~~~~~~~i~~yD~~~~~-w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~-L~vv~~~~~~ 271 (372)
.....+.+ +|. +|+.+.....+..||+.+.. ...+. . .+.......+... -+|+ |++...
T Consensus 84 -~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~-~-------~~~~~~~~~~~~s--~dg~~l~~~~~---- 148 (343)
T 1ri6_A 84 -GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVD-V-------VEGLDGCHSANIS--PDNRTLWVPAL---- 148 (343)
T ss_dssp -SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEE-E-------ECCCTTBCCCEEC--TTSSEEEEEEG----
T ss_pred -CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccc-c-------ccCCCCceEEEEC--CCCCEEEEecC----
Confidence 11122333 454 55555445568889884221 11111 0 1111111122212 4665 554432
Q ss_pred CccceEEEEEEcCCCCEEEEE--ecChHHHHHhhhhccCCCceEEEEe-eCCEEEEEeecCCeEEEEECC--CCceE
Q 017381 272 GISTTMKLWELGCGGNWIEVE--RVPEMMCRKFMSVCYHNYDHVYCFW-HQGMICVCCYTWPEILYYNVA--RRTWH 343 (372)
Q Consensus 272 ~~~~~i~vw~l~~~~~W~~v~--~lp~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~v~~yd~~--~~~w~ 343 (372)
....+.+|.++..++...+. .+.... ........+. .+..+++.....+.+.+||+. +++++
T Consensus 149 -~~~~v~~~d~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~ 215 (343)
T 1ri6_A 149 -KQDRICLFTVSDDGHLVAQDPAEVTTVE---------GAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIE 215 (343)
T ss_dssp -GGTEEEEEEECTTSCEEEEEEEEEECST---------TCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCE
T ss_pred -CCCEEEEEEecCCCceeeecccccccCC---------CCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEE
Confidence 13578999997546555443 221000 0001112222 445677776566789999995 45543
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=95.05 E-value=1.5 Score=37.83 Aligned_cols=181 Identities=10% Similarity=0.034 Sum_probs=86.1
Q ss_pred cCCCceEEEEeccccceeccCCCCCCCCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCC--CccccccCCCCcccc
Q 017381 117 LPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQ--SWSKFDIDGFPSMIL 194 (372)
Q Consensus 117 ~~~~~~~~v~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~--~W~~~~~~~~p~~~~ 194 (372)
+...+.+.++|+.|++...--+.+.......+.+.+.+ ++++.. ...+..||+ ++ .|+... .... .
T Consensus 11 ~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG---~ilvs~----~~~V~~~d~-~G~~~W~~~~--~~~~-~- 78 (276)
T 3no2_A 11 GSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAG---EILFSY----SKGAKMITR-DGRELWNIAA--PAGC-E- 78 (276)
T ss_dssp CTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTS---CEEEEC----BSEEEEECT-TSCEEEEEEC--CTTC-E-
T ss_pred eCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCC---CEEEeC----CCCEEEECC-CCCEEEEEcC--CCCc-c-
Confidence 33467889999989883321111110111233333322 344422 256888988 44 376543 1000 0
Q ss_pred ccCCCcccEEECCEEEEeeeC-CcEEEEEecCCC-eeeccCCCCccccccCCCccccccee-eeccCCCeEEEEEeeecC
Q 017381 195 SQSSHQEGVFYKGSLYFTTPE-PFSIVRFDLENG-IWETPNDANDHMTMMLPHELTFFRLV-NDGEESNKLYLIGGVGRN 271 (372)
Q Consensus 195 ~~~~~~~~v~~~G~~y~~~~~-~~~i~~yD~~~~-~w~~i~~p~~~~~~~~p~~~~~~~lv-~e~~~~g~L~vv~~~~~~ 271 (372)
.......-+|.+++.... ...++.+|+.-+ .|+. ..... .+........+ .. .+|.++++..
T Consensus 79 ---~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~-~~~~~-----~~~~~~~~~~v~~~--~~G~~lv~~~---- 143 (276)
T 3no2_A 79 ---MQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKT-EFETG-----IERPHAQFRQINKN--KKGNYLVPLF---- 143 (276)
T ss_dssp ---EEEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEE-EECCS-----CSSGGGSCSCCEEC--TTSCEEEEET----
T ss_pred ---ccccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEE-eccCC-----CCcccccccCceEC--CCCCEEEEec----
Confidence 011123347777776555 566888887543 2332 11100 11111111111 12 5788776643
Q ss_pred CccceEEEEEEcCCCC--EEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeecCCeEEEEECCCCce
Q 017381 272 GISTTMKLWELGCGGN--WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRTW 342 (372)
Q Consensus 272 ~~~~~i~vw~l~~~~~--W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~yd~~~~~w 342 (372)
....+.+| |..++ |+.-..- ..... .+..++.+++.....+.|+++|+++++.
T Consensus 144 -~~~~v~~~--d~~G~~~w~~~~~~--------------~~~~~-~~~~~g~~~v~~~~~~~v~~~d~~tG~~ 198 (276)
T 3no2_A 144 -ATSEVREI--APNGQLLNSVKLSG--------------TPFSS-AFLDNGDCLVACGDAHCFVQLNLESNRI 198 (276)
T ss_dssp -TTTEEEEE--CTTSCEEEEEECSS--------------CCCEE-EECTTSCEEEECBTTSEEEEECTTTCCE
T ss_pred -CCCEEEEE--CCCCCEEEEEECCC--------------Cccce-eEcCCCCEEEEeCCCCeEEEEeCcCCcE
Confidence 12344444 55565 8743210 01112 2223444666655556799999997754
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.02 E-value=1.8 Score=38.38 Aligned_cols=187 Identities=10% Similarity=0.123 Sum_probs=93.3
Q ss_pred CceEEEEeccccceeccCCCCC-CCCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCCccccccCCCCccccccCC
Q 017381 120 SSSFLVCNLVTLSSRTIDFPTY-PFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQSS 198 (372)
Q Consensus 120 ~~~~~v~NP~t~~~~~lP~~~~-~~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~ 198 (372)
++.+.+||...++...+..+.. ......+.+.+.... +.++.++ ....+.+||..++.|.... .... ...
T Consensus 32 dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~~--~dg~v~iwd~~~~~~~~~~--~~~~----~~~ 102 (379)
T 3jrp_A 32 DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG-TILASCS--YDGKVLIWKEENGRWSQIA--VHAV----HSA 102 (379)
T ss_dssp TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEE--TTSCEEEEEEETTEEEEEE--EECC----CSS
T ss_pred CCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCC-CEEEEec--cCCEEEEEEcCCCceeEee--eecC----CCc
Confidence 4678888887544433322211 111223334322112 2333333 2357889999998886665 2221 011
Q ss_pred CcccEEEC----CEEEEeeeCCcEEEEEecCCCeeec-cCCCCccccccCCCcccccceeee-----------ccCCCeE
Q 017381 199 HQEGVFYK----GSLYFTTPEPFSIVRFDLENGIWET-PNDANDHMTMMLPHELTFFRLVND-----------GEESNKL 262 (372)
Q Consensus 199 ~~~~v~~~----G~~y~~~~~~~~i~~yD~~~~~w~~-i~~p~~~~~~~~p~~~~~~~lv~e-----------~~~~g~L 262 (372)
....+.+. |.+.+.+.....|..||+.+..-.. ....+ .+... ..+... +.-++.+
T Consensus 103 ~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~------~~~~v--~~~~~~~~~~~~~~~~~~~~~~~~ 174 (379)
T 3jrp_A 103 SVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDA------HAIGV--NSASWAPATIEEDGEHNGTKESRK 174 (379)
T ss_dssp CEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEEC------CTTCE--EEEEECCCC----------CTTCE
T ss_pred ceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecC------CCCce--EEEEEcCccccccccccCCCCCCE
Confidence 12233332 5566666666679999987652211 10000 11111 111100 0015777
Q ss_pred EEEEeeecCCccceEEEEEEcCCCC-EEEEEecChHHHHHhhhhccCCCceEEEE--eeC---CEEEEEeecCCeEEEEE
Q 017381 263 YLIGGVGRNGISTTMKLWELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCF--WHQ---GMICVCCYTWPEILYYN 336 (372)
Q Consensus 263 ~vv~~~~~~~~~~~i~vw~l~~~~~-W~~v~~lp~~~~~~~~~~~~~~~~~~~~~--~~~---~~i~~~~~~~~~v~~yd 336 (372)
++++.. ...+.+|.+..... |..+..+... ...+.++ ..+ +.+++.....+.|.+||
T Consensus 175 l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~h------------~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd 237 (379)
T 3jrp_A 175 FVTGGA-----DNLVKIWKYNSDAQTYVLESTLEGH------------SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 237 (379)
T ss_dssp EEEEET-----TSCEEEEEEETTTTEEEEEEEECCC------------SSCEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred EEEEeC-----CCeEEEEEecCCCcceeeEEEEecc------------cCcEeEEEECCCCCCCCeEEEEeCCCEEEEEe
Confidence 776652 35799999975554 7776655311 1123323 233 55566665567899999
Q ss_pred CCCC
Q 017381 337 VARR 340 (372)
Q Consensus 337 ~~~~ 340 (372)
++++
T Consensus 238 ~~~~ 241 (379)
T 3jrp_A 238 QDNE 241 (379)
T ss_dssp ESST
T ss_pred CCCC
Confidence 9986
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=95.00 E-value=1.8 Score=38.76 Aligned_cols=191 Identities=8% Similarity=-0.002 Sum_probs=95.8
Q ss_pred EecCc-EEEEecCCCceEEEEeccccceeccCCCCCCCCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCCccccc
Q 017381 107 SSSKG-LLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFD 185 (372)
Q Consensus 107 ~s~~G-ll~~~~~~~~~~~v~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~~~ 185 (372)
-+.+| .+++....++.+.+||+.+++....-.... ....+++.+.+. .+++.+. ....+.+||..+++-...-
T Consensus 39 ~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~--~v~~~~~spdg~--~l~~~~~--~~~~v~v~d~~~~~~~~~~ 112 (391)
T 1l0q_A 39 ISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS--SPQGVAVSPDGK--QVYVTNM--ASSTLSVIDTTSNTVAGTV 112 (391)
T ss_dssp ECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS--SEEEEEECTTSS--EEEEEET--TTTEEEEEETTTTEEEEEE
T ss_pred ECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC--CccceEECCCCC--EEEEEEC--CCCEEEEEECCCCeEEEEE
Confidence 34455 555544345789999999988644322211 223344433222 4444432 3357899999887543222
Q ss_pred cCCCCccccccCCCcccEEE--CCE-EEEeeeCCcEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCe-
Q 017381 186 IDGFPSMILSQSSHQEGVFY--KGS-LYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNK- 261 (372)
Q Consensus 186 ~~~~p~~~~~~~~~~~~v~~--~G~-~y~~~~~~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~- 261 (372)
... .....+.+ +|. +|+.+.....|..+|+.+.+..... + ..... ..+... -+|+
T Consensus 113 --~~~-------~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~-~-------~~~~~--~~~~~~--~dg~~ 171 (391)
T 1l0q_A 113 --KTG-------KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV-S-------VGRSP--KGIAVT--PDGTK 171 (391)
T ss_dssp --ECS-------SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE-E-------CCSSE--EEEEEC--TTSSE
T ss_pred --eCC-------CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE-e-------cCCCc--ceEEEC--CCCCE
Confidence 111 11123333 454 6666665668999999887654421 1 11111 122211 4565
Q ss_pred EEEEEeeecCCccceEEEEEEcCCCCEEEEEecChHHHHHhhhhccCCCceEEEEe-eCCEEEEEee--cCCeEEEEECC
Q 017381 262 LYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFW-HQGMICVCCY--TWPEILYYNVA 338 (372)
Q Consensus 262 L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~--~~~~v~~yd~~ 338 (372)
|++.+. ....+.+|.+.. + ..+..++.. ......++. .+..+++... ..+.|.+||++
T Consensus 172 l~~~~~-----~~~~v~~~d~~~-~--~~~~~~~~~-----------~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~ 232 (391)
T 1l0q_A 172 VYVANF-----DSMSISVIDTVT-N--SVIDTVKVE-----------AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTG 232 (391)
T ss_dssp EEEEET-----TTTEEEEEETTT-T--EEEEEEECS-----------SEEEEEEECTTSSEEEEEEECSSCCEEEEEETT
T ss_pred EEEEeC-----CCCEEEEEECCC-C--eEEEEEecC-----------CCccceEECCCCCEEEEEecCcCCCcEEEEECC
Confidence 444432 235688887642 2 222222110 000111222 3456666654 45689999999
Q ss_pred CCceE
Q 017381 339 RRTWH 343 (372)
Q Consensus 339 ~~~w~ 343 (372)
+++..
T Consensus 233 ~~~~~ 237 (391)
T 1l0q_A 233 TNKIT 237 (391)
T ss_dssp TTEEE
T ss_pred CCeEE
Confidence 87543
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=94.97 E-value=1.7 Score=37.94 Aligned_cols=226 Identities=8% Similarity=0.046 Sum_probs=110.1
Q ss_pred ccccccCCCCCeeee-cCCCCCCCCCceEEEEecCc-EEEEecCCCceEEEEeccccce--eccCCCCCCCCceeEEEEe
Q 017381 77 QYPLYDSTHGTWRRL-SLPYSLLLPSAATLLSSSKG-LLCFSLPSSSSFLVCNLVTLSS--RTIDFPTYPFDFELLTLVS 152 (372)
Q Consensus 77 ~~~~~d~~~~~w~~l-~~~~~~~~~~~~~~~~s~~G-ll~~~~~~~~~~~v~NP~t~~~--~~lP~~~~~~~~~~~~~~~ 152 (372)
.+..+|...++.... ..+ . ....+.-+-+| .+++.....+.+.++|+.+++. ..++....+ ...+++.+
T Consensus 21 ~v~~~d~~~~~~~~~~~~~----~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~--~~~~~~s~ 93 (331)
T 3u4y_A 21 RISFFSTDTLEILNQITLG----Y-DFVDTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSS--MADVDITP 93 (331)
T ss_dssp EEEEEETTTCCEEEEEECC----C-CEEEEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSC--CCCEEECT
T ss_pred eEEEEeCcccceeeeEEcc----C-CcceEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCC--ccceEECC
Confidence 456678776665432 322 1 11133345555 5665554467999999999874 222221111 11244543
Q ss_pred CCCCEEEEEEeecC-CCceEEEEECCCCCccccccCCCCccccccCCCcccEEE--CCE-EEEeeeCCcE-EEEEecCCC
Q 017381 153 TPSGYKIFMLFAKS-FPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFY--KGS-LYFTTPEPFS-IVRFDLENG 227 (372)
Q Consensus 153 ~~~~ykvv~~~~~~-~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~--~G~-~y~~~~~~~~-i~~yD~~~~ 227 (372)
.+. .++ +.... ....+.+||..++.-...- .... ....+.+ +|+ +|........ +..||+..+
T Consensus 94 dg~--~l~-~~~~~~~~~~i~v~d~~~~~~~~~~--~~~~-------~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~ 161 (331)
T 3u4y_A 94 DDQ--FAV-TVTGLNHPFNMQSYSFLKNKFISTI--PIPY-------DAVGIAISPNGNGLILIDRSSANTVRRFKIDAD 161 (331)
T ss_dssp TSS--EEE-ECCCSSSSCEEEEEETTTTEEEEEE--ECCT-------TEEEEEECTTSSCEEEEEETTTTEEEEEEECTT
T ss_pred CCC--EEE-EecCCCCcccEEEEECCCCCeEEEE--ECCC-------CccceEECCCCCEEEEEecCCCceEEEEEECCC
Confidence 322 444 33221 2238999999877543221 1110 1122333 564 6766555445 888887642
Q ss_pred e-eeccCCCCccccccCCCcccccceeeeccCCCe-EEEEEeeecCCccceEEEEEEcCCCCEEEEEecChHHHHHhhhh
Q 017381 228 I-WETPNDANDHMTMMLPHELTFFRLVNDGEESNK-LYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSV 305 (372)
Q Consensus 228 ~-w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~-L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~lp~~~~~~~~~~ 305 (372)
. ..... . ..++.+.....+... -+|+ |++... ....+.+|.++....-..+..++...
T Consensus 162 g~~~~~~-~-----~~~~~~~~~~~~~~s--pdg~~l~v~~~-----~~~~v~v~d~~~~~~~~~~~~~~~~~------- 221 (331)
T 3u4y_A 162 GVLFDTG-Q-----EFISGGTRPFNITFT--PDGNFAFVANL-----IGNSIGILETQNPENITLLNAVGTNN------- 221 (331)
T ss_dssp CCEEEEE-E-----EEECSSSSEEEEEEC--TTSSEEEEEET-----TTTEEEEEECSSTTSCEEEEEEECSS-------
T ss_pred CcEeecC-C-----ccccCCCCccceEEC--CCCCEEEEEeC-----CCCeEEEEECCCCcccceeeeccCCC-------
Confidence 1 11000 0 001111111122212 4676 666543 23578899875332222244443210
Q ss_pred ccCCCceEEEEe-eCCEEEEEeecCCeEEEEECCCCceEEC
Q 017381 306 CYHNYDHVYCFW-HQGMICVCCYTWPEILYYNVARRTWHWL 345 (372)
Q Consensus 306 ~~~~~~~~~~~~-~~~~i~~~~~~~~~v~~yd~~~~~w~~v 345 (372)
... ...+. ++..+|+.....+.|.+||+++++.+.+
T Consensus 222 ---~~~-~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~ 258 (331)
T 3u4y_A 222 ---LPG-TIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFV 258 (331)
T ss_dssp ---CCC-CEEECTTSSEEEEECSSEEEEEEEETTTTEEEEE
T ss_pred ---CCc-eEEECCCCCEEEEEEcCCCEEEEEECCCCceeee
Confidence 011 12333 4556787765556799999999988554
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=94.83 E-value=2.1 Score=38.36 Aligned_cols=187 Identities=12% Similarity=0.038 Sum_probs=94.3
Q ss_pred EEEEecCCCceEEEEeccccceeccCCCCCCCCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCCccccccCCCCc
Q 017381 112 LLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPS 191 (372)
Q Consensus 112 ll~~~~~~~~~~~v~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~ 191 (372)
.+++.+..++.+.+||..+++....-... .....+++.+. .-.+++.+. ....+.+||..+++-...- ...
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~--~~~~~~~~s~d--g~~l~~~~~--~d~~i~v~d~~~~~~~~~~--~~~- 73 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVG--SNPMGAVISPD--GTKVYVANA--HSNDVSIIDTATNNVIATV--PAG- 73 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECS--SSEEEEEECTT--SSEEEEEEG--GGTEEEEEETTTTEEEEEE--ECS-
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecC--CCcceEEECCC--CCEEEEECC--CCCeEEEEECCCCeEEEEE--ECC-
Confidence 34444445678999999988754322111 11223444332 224544442 2357889999877543221 111
Q ss_pred cccccCCCcccEEE--CCE-EEEeeeCCcEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCe-EEEEEe
Q 017381 192 MILSQSSHQEGVFY--KGS-LYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNK-LYLIGG 267 (372)
Q Consensus 192 ~~~~~~~~~~~v~~--~G~-~y~~~~~~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~-L~vv~~ 267 (372)
.....+.+ +|. +|+.+.....|..||+.+.+..... + ..... ..+... -+|+ |++.+.
T Consensus 74 ------~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~-~-------~~~~~--~~~~~s--~dg~~l~~~~~ 135 (391)
T 1l0q_A 74 ------SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTV-K-------TGKSP--LGLALS--PDGKKLYVTNN 135 (391)
T ss_dssp ------SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE-E-------CSSSE--EEEEEC--TTSSEEEEEET
T ss_pred ------CCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEE-e-------CCCCc--ceEEEC--CCCCEEEEEeC
Confidence 01122333 354 5555555567999999887654321 1 11111 122212 4666 445432
Q ss_pred eecCCccceEEEEEEcCCCCEEEEEecChHHHHHhhhhccCCCceEEEEe-eCCEEEEEeecCCeEEEEECCCCceEE
Q 017381 268 VGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFW-HQGMICVCCYTWPEILYYNVARRTWHW 344 (372)
Q Consensus 268 ~~~~~~~~~i~vw~l~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~v~~yd~~~~~w~~ 344 (372)
....+.+|.+.. ++......... .....++. .++.+++.....+.|.+||+++++...
T Consensus 136 -----~~~~v~~~d~~~-~~~~~~~~~~~-------------~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~ 194 (391)
T 1l0q_A 136 -----GDKTVSVINTVT-KAVINTVSVGR-------------SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVID 194 (391)
T ss_dssp -----TTTEEEEEETTT-TEEEEEEECCS-------------SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred -----CCCEEEEEECCC-CcEEEEEecCC-------------CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEE
Confidence 235788887642 33222211110 01112222 345677776666789999999886544
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=94.50 E-value=2 Score=36.63 Aligned_cols=190 Identities=13% Similarity=0.079 Sum_probs=95.4
Q ss_pred EecCcEEEEecCCCceEEEEeccccceeccCCCCCCCCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCCcccccc
Q 017381 107 SSSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDI 186 (372)
Q Consensus 107 ~s~~Gll~~~~~~~~~~~v~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~~~~ 186 (372)
...+|-+++.....+.+.++|+ +++...+...........+++++. . ++++... ....+.+|+. +++.....
T Consensus 106 ~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~--g-~l~v~~~--~~~~i~~~~~-~g~~~~~~- 177 (299)
T 2z2n_A 106 EGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSD--N-ALWFTEN--QNNAIGRITE-SGDITEFK- 177 (299)
T ss_dssp ECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTT--S-CEEEEET--TTTEEEEECT-TCCEEEEE-
T ss_pred ECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCC--C-CEEEEeC--CCCEEEEEcC-CCcEEEee-
Confidence 3446755555433578999999 777655432211112233444332 2 4444331 2357888888 77665442
Q ss_pred CCCCccccccCCCcccEEE--CCEEEEeeeCCcEEEEEecCCCeeeccCCCCccccccCCCccc-ccceeeeccCCCeEE
Q 017381 187 DGFPSMILSQSSHQEGVFY--KGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELT-FFRLVNDGEESNKLY 263 (372)
Q Consensus 187 ~~~p~~~~~~~~~~~~v~~--~G~~y~~~~~~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~-~~~lv~e~~~~g~L~ 263 (372)
.+. .. ....++.+ +|.+|+.......+..||+ +.++..+. ++.... ...+... -+|+|+
T Consensus 178 --~~~-~~---~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~---------~~~~~~~~~~i~~~--~~g~l~ 239 (299)
T 2z2n_A 178 --IPT-PA---SGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFK---------IPTPNARPHAITAG--AGIDLW 239 (299)
T ss_dssp --CSS-TT---CCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEE---------CSSTTCCEEEEEEC--STTCEE
T ss_pred --CCC-CC---CcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEE---------CCCCCCCceeEEEC--CCCCEE
Confidence 111 00 11224444 4788776655567999999 66665543 222111 1233323 478888
Q ss_pred EEEeeecCCccceEEEEEEcCCCCEEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeecCCeEEEEECCCCce
Q 017381 264 LIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRTW 342 (372)
Q Consensus 264 vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~yd~~~~~w 342 (372)
+.... ...+.+| +..+....+ .++... .......+ .++.+++... .+.+..||+++++.
T Consensus 240 v~~~~-----~~~i~~~--d~~g~~~~~-~~~~~~----------~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~~~ 298 (299)
T 2z2n_A 240 FTEWG-----ANKIGRL--TSNNIIEEY-PIQIKS----------AEPHGICF-DGETIWFAME-CDKIGKLTLIKDNM 298 (299)
T ss_dssp EEETT-----TTEEEEE--ETTTEEEEE-ECSSSS----------CCEEEEEE-CSSCEEEEET-TTEEEEEEEC----
T ss_pred EeccC-----CceEEEE--CCCCceEEE-eCCCCC----------CccceEEe-cCCCEEEEec-CCcEEEEEcCcccC
Confidence 87531 2344444 443433322 122110 00111233 6677888764 57899999988754
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.98 E-value=2.6 Score=42.19 Aligned_cols=187 Identities=10% Similarity=0.147 Sum_probs=94.4
Q ss_pred CceEEEEeccccceeccCCCCCC-CCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCCccccccCCCCccccccCC
Q 017381 120 SSSFLVCNLVTLSSRTIDFPTYP-FDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQSS 198 (372)
Q Consensus 120 ~~~~~v~NP~t~~~~~lP~~~~~-~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~ 198 (372)
++.+.|||..++++..+...... .....+.+.+..+. +.++.++ .+..+.+||..++.|.... .... ...
T Consensus 30 dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~-~~l~s~s--~Dg~I~vwd~~~~~~~~~~--~~~~----h~~ 100 (753)
T 3jro_A 30 DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG-TILASCS--YDGKVLIWKEENGRWSQIA--VHAV----HSA 100 (753)
T ss_dssp TTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSC-SEEEEEE--TTSCEEEEEEETTEEEEEE--EECC----CSS
T ss_pred CCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCC-CEEEEEe--CCCeEEEEECCCCcccccc--cccC----CCC
Confidence 46788888875554443322211 11223344332112 2333333 2357889999988876655 2211 111
Q ss_pred CcccEEEC----CEEEEeeeCCcEEEEEecCCCeeecc-CCCCccccccCCCcccccceeee-----------ccCCCeE
Q 017381 199 HQEGVFYK----GSLYFTTPEPFSIVRFDLENGIWETP-NDANDHMTMMLPHELTFFRLVND-----------GEESNKL 262 (372)
Q Consensus 199 ~~~~v~~~----G~~y~~~~~~~~i~~yD~~~~~w~~i-~~p~~~~~~~~p~~~~~~~lv~e-----------~~~~g~L 262 (372)
.-..+.+. |...+.++....|..||+.+..-... ...+ .+.... .+... +..+|.+
T Consensus 101 ~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~------~~~~v~--~l~~~p~~~~~~~~~~~~~d~~~ 172 (753)
T 3jro_A 101 SVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDA------HAIGVN--SASWAPATIEEDGEHNGTKESRK 172 (753)
T ss_dssp CEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEEC------CSSCEE--EEEECCCC---------CGGGCC
T ss_pred CeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeec------CCCceE--EEEecCcccccccccccCCCCCE
Confidence 12233332 66666666666799999876522111 0000 111111 11100 0014666
Q ss_pred EEEEeeecCCccceEEEEEEcCCCC-EEEEEecChHHHHHhhhhccCCCceEEEE--eeC---CEEEEEeecCCeEEEEE
Q 017381 263 YLIGGVGRNGISTTMKLWELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCF--WHQ---GMICVCCYTWPEILYYN 336 (372)
Q Consensus 263 ~vv~~~~~~~~~~~i~vw~l~~~~~-W~~v~~lp~~~~~~~~~~~~~~~~~~~~~--~~~---~~i~~~~~~~~~v~~yd 336 (372)
++++.. ...+.+|.+..... +..+..+... ...+.++ ..+ +..++.+...+.|.+||
T Consensus 173 l~sgs~-----dg~I~iwd~~~~~~~~~~~~~~~~h------------~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd 235 (753)
T 3jro_A 173 FVTGGA-----DNLVKIWKYNSDAQTYVLESTLEGH------------SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 235 (753)
T ss_dssp EEEEET-----TSCEEEEEEETTTTEEEEEEEECCC------------SSCEEEEEECCCCSSSEEEEEEESSSCEEEEE
T ss_pred EEEEEC-----CCeEEEEeccCCcccceeeeeecCC------------CCcEEEEEeccCCCCCCEEEEEecCCEEEEec
Confidence 666552 35799999976554 7766555311 1223333 223 55666665667899999
Q ss_pred CCCC
Q 017381 337 VARR 340 (372)
Q Consensus 337 ~~~~ 340 (372)
+.++
T Consensus 236 ~~~~ 239 (753)
T 3jro_A 236 QDNE 239 (753)
T ss_dssp ESSS
T ss_pred CCCC
Confidence 9986
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=93.92 E-value=2.7 Score=35.85 Aligned_cols=195 Identities=14% Similarity=0.099 Sum_probs=101.3
Q ss_pred EEecCcEEEEecCCCceEEEEeccccceeccCCCCCCCCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCCccccc
Q 017381 106 LSSSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFD 185 (372)
Q Consensus 106 ~~s~~Gll~~~~~~~~~~~v~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~~~ 185 (372)
....+|-+++.....+.+.++|+. ++...++..........++++.. . ++++... ....+.+||.. ++++...
T Consensus 26 ~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~--g-~l~v~~~--~~~~v~~~d~~-g~~~~~~ 98 (300)
T 2qc5_A 26 TSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSL--G-DIWFTEN--GANKIGKLSKK-GGFTEYP 98 (300)
T ss_dssp EECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTT--S-CEEEEET--TTTEEEEECTT-SCEEEEE
T ss_pred eECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCC--C-CEEEEec--CCCeEEEECCC-CCeEEec
Confidence 334566555554345789999998 77665443211112223344322 2 3444331 23578889887 6665443
Q ss_pred cCCCCccccccCCCcccEEE--CCEEEEeeeCCcEEEEEecCCCeeeccCCCCccccccCCCcc-cccceeeeccCCCeE
Q 017381 186 IDGFPSMILSQSSHQEGVFY--KGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHEL-TFFRLVNDGEESNKL 262 (372)
Q Consensus 186 ~~~~p~~~~~~~~~~~~v~~--~G~~y~~~~~~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~-~~~~lv~e~~~~g~L 262 (372)
.+. .. ....++.+ +|.+|+.......+..||+. .+..... +|... ....+... -+|+|
T Consensus 99 ---~~~-~~---~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~---------~~~~~~~~~~i~~d--~~g~l 159 (300)
T 2qc5_A 99 ---LPQ-PD---SGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYD---------LPNKGSYPAFITLG--SDNAL 159 (300)
T ss_dssp ---CSS-TT---CCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEE---------CSSTTCCEEEEEEC--TTSSE
T ss_pred ---CCC-CC---CCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEcc---------CCCCCCCceeEEEC--CCCCE
Confidence 121 00 11223444 58888766555679999987 5554432 22111 11233323 57888
Q ss_pred EEEEeeecCCccceEEEEEEcCCCCEEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeecCCeEEEEECCCCce
Q 017381 263 YLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRTW 342 (372)
Q Consensus 263 ~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~yd~~~~~w 342 (372)
++.... .. .|+.++..++...+ .++... ....-.++..++.+|+.....+.|..||+ ++++
T Consensus 160 ~v~~~~-----~~--~i~~~~~~g~~~~~-~~~~~~----------~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~ 220 (300)
T 2qc5_A 160 WFTENQ-----NN--SIGRITNTGKLEEY-PLPTNA----------AAPVGITSGNDGALWFVEIMGNKIGRITT-TGEI 220 (300)
T ss_dssp EEEETT-----TT--EEEEECTTCCEEEE-ECSSTT----------CCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE
T ss_pred EEEecC-----CC--eEEEECCCCcEEEe-eCCCCC----------CCcceEEECCCCCEEEEccCCCEEEEEcC-CCcE
Confidence 887531 12 46666665555543 222110 00111223335678888765667999998 6666
Q ss_pred EEC
Q 017381 343 HWL 345 (372)
Q Consensus 343 ~~v 345 (372)
...
T Consensus 221 ~~~ 223 (300)
T 2qc5_A 221 SEY 223 (300)
T ss_dssp EEE
T ss_pred EEE
Confidence 553
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=93.82 E-value=2.5 Score=35.80 Aligned_cols=138 Identities=17% Similarity=0.087 Sum_probs=79.4
Q ss_pred CccccccCCCCCee-eecCCCCCCCCCceEEEEecCcEEEEecCCCceEEEEeccccce-eccCCCCCCCCceeEEEEeC
Q 017381 76 DQYPLYDSTHGTWR-RLSLPYSLLLPSAATLLSSSKGLLCFSLPSSSSFLVCNLVTLSS-RTIDFPTYPFDFELLTLVST 153 (372)
Q Consensus 76 ~~~~~~d~~~~~w~-~l~~~~~~~~~~~~~~~~s~~Gll~~~~~~~~~~~v~NP~t~~~-~~lP~~~~~~~~~~~~~~~~ 153 (372)
..+..+|+..++-. .++++. .....-++..++-|+......+.++|+|+.|.+. .++|... .+.|+...
T Consensus 43 S~v~~vD~~tgkv~~~~~l~~----~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~-----~Gwglt~d 113 (243)
T 3mbr_X 43 SSVRKVDLETGRILQRAEVPP----PYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYPG-----EGWALTSD 113 (243)
T ss_dssp CEEEEEETTTCCEEEEEECCT----TCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEECSS-----CCCEEEEC
T ss_pred ceEEEEECCCCCEEEEEeCCC----CcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCC-----CceEEeeC
Confidence 34566788776543 345442 1111223444666666666678999999998774 4555332 23455543
Q ss_pred CCCEEEEEEeecCCCceEEEEECCCCCcc-ccccCCCCccccccCCCcccEEECCEEEEeeeCCcEEEEEecCCCeee
Q 017381 154 PSGYKIFMLFAKSFPNYAFVYDSTDQSWS-KFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWE 230 (372)
Q Consensus 154 ~~~ykvv~~~~~~~~~~~~vy~s~~~~W~-~~~~~~~p~~~~~~~~~~~~v~~~G~~y~~~~~~~~i~~yD~~~~~w~ 230 (372)
+ .++++..+ ...+.++|+++.+=. .+. +.....+........+.+|.+|.-......|.+.|+++.+-.
T Consensus 114 g--~~L~vSdg---s~~l~~iDp~t~~~~~~I~---V~~~g~~~~~lNeLe~~~G~lyanvw~s~~I~vIDp~tG~V~ 183 (243)
T 3mbr_X 114 D--SHLYMSDG---TAVIRKLDPDTLQQVGSIK---VTAGGRPLDNLNELEWVNGELLANVWLTSRIARIDPASGKVV 183 (243)
T ss_dssp S--SCEEEECS---SSEEEEECTTTCCEEEEEE---CEETTEECCCEEEEEEETTEEEEEETTTTEEEEECTTTCBEE
T ss_pred C--CEEEEECC---CCeEEEEeCCCCeEEEEEE---EccCCcccccceeeEEeCCEEEEEECCCCeEEEEECCCCCEE
Confidence 3 25665442 467899999986532 221 110001101112234569999977777778999999987653
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=93.63 E-value=1.5 Score=38.63 Aligned_cols=152 Identities=13% Similarity=0.093 Sum_probs=77.1
Q ss_pred eEEEEECCCCCccccccCCCCccccccCCCcccEEE--CCEEEEeeeC--CcEEEEEecCCCeeeccCCCCccccccCCC
Q 017381 170 YAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFY--KGSLYFTTPE--PFSIVRFDLENGIWETPNDANDHMTMMLPH 245 (372)
Q Consensus 170 ~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~--~G~~y~~~~~--~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~ 245 (372)
.++.+|..+++++... .... . .....+.+ +|++|..... ...|..||+.+.+.+.+... ...
T Consensus 19 ~v~~~d~~tg~~~~~~--~~~~--~---~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~-------~~~ 84 (347)
T 3hfq_A 19 YQGTLDTTAKTLTNDG--LLAA--T---QNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTV-------VAP 84 (347)
T ss_dssp EEEEEETTTTEEEEEE--EEEE--C---SCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEE-------EEE
T ss_pred EEEEEcCCCCeEEEee--eeec--c---CCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeee-------ecC
Confidence 4556677778776644 1111 0 11122333 6888877653 35799999987776554310 001
Q ss_pred cccccceeeeccCCCe-EEEEEeeecCCccceEEEEEEcCCCCEEEEEecChHHHHHhhhhccCCCceE--EEEeeCCEE
Q 017381 246 ELTFFRLVNDGEESNK-LYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHV--YCFWHQGMI 322 (372)
Q Consensus 246 ~~~~~~lv~e~~~~g~-L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~--~~~~~~~~i 322 (372)
......+... -+|+ |++... ....+.+|.++.++....+..++..-..-..+ .....+ ..+..++.+
T Consensus 85 ~~~p~~~a~s--pdg~~l~~~~~-----~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~---~~~~~~~~~~~spdg~l 154 (347)
T 3hfq_A 85 GTPPAYVAVD--EARQLVYSANY-----HKGTAEVMKIAADGALTLTDTVQHSGHGPRPE---QDGSHIHYTDLTPDNRL 154 (347)
T ss_dssp SCCCSEEEEE--TTTTEEEEEET-----TTTEEEEEEECTTSCEEEEEEEECCCCCSSTT---CSSCCEEEEEECTTSCE
T ss_pred CCCCEEEEEC--CCCCEEEEEeC-----CCCEEEEEEeCCCCCeeecceeecCCCCCCcc---ccCCCceEEEECCCCcE
Confidence 1111122212 5676 554432 23578999997666655554432110000000 000112 233334447
Q ss_pred EEEeecCCeEEEEECC-CCceEEC
Q 017381 323 CVCCYTWPEILYYNVA-RRTWHWL 345 (372)
Q Consensus 323 ~~~~~~~~~v~~yd~~-~~~w~~v 345 (372)
|+.....+.|.+||+. +++...+
T Consensus 155 ~v~~~~~~~v~~~~~~~~g~~~~~ 178 (347)
T 3hfq_A 155 AVIDLGSDKVYVYNVSDAGQLSEQ 178 (347)
T ss_dssp EEEETTTTEEEEEEECTTSCEEEE
T ss_pred EEEeCCCCEEEEEEECCCCcEEEe
Confidence 7777666789999998 6666543
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=93.28 E-value=4.3 Score=36.27 Aligned_cols=186 Identities=11% Similarity=0.085 Sum_probs=96.3
Q ss_pred EEecCcEEEEecCCCceEEEEeccccceeccCCCCCCCCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCC--ccc
Q 017381 106 LSSSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQS--WSK 183 (372)
Q Consensus 106 ~~s~~Gll~~~~~~~~~~~v~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~--W~~ 183 (372)
....+|.+++... .+.++.+|+.|++...--....... ....... . +|++.. ....+..||..+++ |+.
T Consensus 99 ~~~~~~~v~v~~~-~g~l~a~d~~tG~~~W~~~~~~~~~-~~p~~~~---~-~v~v~~---~~g~l~~~d~~tG~~~W~~ 169 (376)
T 3q7m_A 99 VTVSGGHVYIGSE-KAQVYALNTSDGTVAWQTKVAGEAL-SRPVVSD---G-LVLIHT---SNGQLQALNEADGAVKWTV 169 (376)
T ss_dssp EEEETTEEEEEET-TSEEEEEETTTCCEEEEEECSSCCC-SCCEEET---T-EEEEEC---TTSEEEEEETTTCCEEEEE
T ss_pred ceEeCCEEEEEcC-CCEEEEEECCCCCEEEEEeCCCceE-cCCEEEC---C-EEEEEc---CCCeEEEEECCCCcEEEEE
Confidence 4456777666543 4789999999998432111111111 0111111 1 444432 23478899988775 876
Q ss_pred cccCCCCccccccCCCcccEEECCEEEEeeeCCcEEEEEecCCC--eeeccCCCCccccccCCCc---------ccccce
Q 017381 184 FDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENG--IWETPNDANDHMTMMLPHE---------LTFFRL 252 (372)
Q Consensus 184 ~~~~~~p~~~~~~~~~~~~v~~~G~~y~~~~~~~~i~~yD~~~~--~w~~i~~p~~~~~~~~p~~---------~~~~~l 252 (372)
.. .-+. ........++..+|.+|+-. ....+.+||..+. .|+.-. + .|.+ .....+
T Consensus 170 ~~--~~~~--~~~~~~~~~~~~~~~v~~g~-~~g~l~~~d~~tG~~~w~~~~-~-------~~~~~~~~~~~~~~~~~p~ 236 (376)
T 3q7m_A 170 NL--DMPS--LSLRGESAPTTAFGAAVVGG-DNGRVSAVLMEQGQMIWQQRI-S-------QATGSTEIDRLSDVDTTPV 236 (376)
T ss_dssp EC--CC-------CCCCCCEEETTEEEECC-TTTEEEEEETTTCCEEEEEEC-C-------C-----------CCCCCCE
T ss_pred eC--CCCc--eeecCCCCcEEECCEEEEEc-CCCEEEEEECCCCcEEEEEec-c-------cCCCCcccccccccCCCcE
Confidence 54 2221 11112244667788887643 3346999998755 455421 1 1211 112223
Q ss_pred eeeccCCCeEEEEEeeecCCccceEEEEEEcCCCC--EEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeecCC
Q 017381 253 VNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGN--WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWP 330 (372)
Q Consensus 253 v~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~~~~~--W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 330 (372)
+ .+|.+++... ...+..+... .++ |..- .+ .....+..++.||+... .+
T Consensus 237 ~----~~~~v~~~~~------~g~l~~~d~~-tG~~~w~~~--~~---------------~~~~~~~~~~~l~~~~~-~g 287 (376)
T 3q7m_A 237 V----VNGVVFALAY------NGNLTALDLR-SGQIMWKRE--LG---------------SVNDFIVDGNRIYLVDQ-ND 287 (376)
T ss_dssp E----ETTEEEEECT------TSCEEEEETT-TCCEEEEEC--CC---------------CEEEEEEETTEEEEEET-TC
T ss_pred E----ECCEEEEEec------CcEEEEEECC-CCcEEeecc--CC---------------CCCCceEECCEEEEEcC-CC
Confidence 3 5788877643 1233344332 233 8642 11 01123345788888763 46
Q ss_pred eEEEEECCCCce
Q 017381 331 EILYYNVARRTW 342 (372)
Q Consensus 331 ~v~~yd~~~~~w 342 (372)
.+.++|.++++-
T Consensus 288 ~l~~~d~~tG~~ 299 (376)
T 3q7m_A 288 RVMALTIDGGVT 299 (376)
T ss_dssp CEEEEETTTCCE
T ss_pred eEEEEECCCCcE
Confidence 899999999863
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=92.77 E-value=2 Score=36.83 Aligned_cols=137 Identities=15% Similarity=0.051 Sum_probs=77.5
Q ss_pred ccccccCCCCCee-eecCCCCCCCCCceEEEEecCcEEEEecCCCceEEEEeccccce-eccCCCCCCCCceeEEEEeCC
Q 017381 77 QYPLYDSTHGTWR-RLSLPYSLLLPSAATLLSSSKGLLCFSLPSSSSFLVCNLVTLSS-RTIDFPTYPFDFELLTLVSTP 154 (372)
Q Consensus 77 ~~~~~d~~~~~w~-~l~~~~~~~~~~~~~~~~s~~Gll~~~~~~~~~~~v~NP~t~~~-~~lP~~~~~~~~~~~~~~~~~ 154 (372)
.+..+|+..++-. .++++. .....-++..++-|+......+.++|+|+.|.+. .++|... .+.|+...+
T Consensus 66 ~v~~vD~~Tgkv~~~~~l~~----~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~-----eG~glt~dg 136 (262)
T 3nol_A 66 SIRKVDIESGKTLQQIELGK----RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDG-----EGWGLTHND 136 (262)
T ss_dssp EEEEECTTTCCEEEEEECCT----TCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSS-----CCCCEEECS
T ss_pred eEEEEECCCCcEEEEEecCC----ccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCC-----CceEEecCC
Confidence 3556777766533 444431 1111223445666666666678999999999884 4555322 233444332
Q ss_pred CCEEEEEEeecCCCceEEEEECCCCCcc-ccccCCCCccccccCCCcccEEECCEEEEeeeCCcEEEEEecCCCeee
Q 017381 155 SGYKIFMLFAKSFPNYAFVYDSTDQSWS-KFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWE 230 (372)
Q Consensus 155 ~~ykvv~~~~~~~~~~~~vy~s~~~~W~-~~~~~~~p~~~~~~~~~~~~v~~~G~~y~~~~~~~~i~~yD~~~~~w~ 230 (372)
.+++...+ ...+.++|+++.+=. .+. +.....+...-....+.+|.+|.-......|...|+++.+-.
T Consensus 137 --~~L~~SdG---s~~i~~iDp~T~~v~~~I~---V~~~g~~~~~lNELe~~~G~lyan~w~~~~I~vIDp~tG~V~ 205 (262)
T 3nol_A 137 --QYLIMSDG---TPVLRFLDPESLTPVRTIT---VTAHGEELPELNELEWVDGEIFANVWQTNKIVRIDPETGKVT 205 (262)
T ss_dssp --SCEEECCS---SSEEEEECTTTCSEEEEEE---CEETTEECCCEEEEEEETTEEEEEETTSSEEEEECTTTCBEE
T ss_pred --CEEEEECC---CCeEEEEcCCCCeEEEEEE---eccCCccccccceeEEECCEEEEEEccCCeEEEEECCCCcEE
Confidence 24555432 467899999986532 222 111000100111234669999987777778999999987653
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=92.62 E-value=4.3 Score=34.51 Aligned_cols=149 Identities=10% Similarity=0.083 Sum_probs=77.3
Q ss_pred ecCcEEEEecCCCceEEEEeccccceeccCCCCCCCCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCCccccccC
Q 017381 108 SSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDID 187 (372)
Q Consensus 108 s~~Gll~~~~~~~~~~~v~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~~~~~ 187 (372)
..+|-+++.....+.+.++|+..+....+...........+++++. . ++++... ....+.+|+.....-....
T Consensus 129 ~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~--g-~l~v~~~--~~~~i~~~~~~g~~~~~~~-- 201 (286)
T 1q7f_A 129 DNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDK--Q-EIFISDN--RAHCVKVFNYEGQYLRQIG-- 201 (286)
T ss_dssp CTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSS--S-EEEEEEG--GGTEEEEEETTCCEEEEES--
T ss_pred eCCCCEEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCC--C-CEEEEEC--CCCEEEEEcCCCCEEEEEc--
Confidence 4466555554445789999986555444432111111234455432 2 4555432 2357889998554322222
Q ss_pred CCCccccccCCCcccEEE--CCEEEEeeeCCc-EEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeEEE
Q 017381 188 GFPSMILSQSSHQEGVFY--KGSLYFTTPEPF-SIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYL 264 (372)
Q Consensus 188 ~~p~~~~~~~~~~~~v~~--~G~~y~~~~~~~-~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~v 264 (372)
. .. .+ ....++.+ +|.+|+...... .|..||...+....+... .+.. ....+... -+|+|++
T Consensus 202 ~-~g-~~---~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~-------~~~~-~~~~i~~~--~~g~l~v 266 (286)
T 1q7f_A 202 G-EG-IT---NYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESK-------VKHA-QCFDVALM--DDGSVVL 266 (286)
T ss_dssp C-TT-TS---CSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEES-------SCCS-CEEEEEEE--TTTEEEE
T ss_pred c-CC-cc---CCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEccc-------CCCC-cceeEEEC--CCCcEEE
Confidence 0 00 00 11234555 578887766554 799999765544443211 1111 11123223 5899888
Q ss_pred EEeeecCCccceEEEEEEcC
Q 017381 265 IGGVGRNGISTTMKLWELGC 284 (372)
Q Consensus 265 v~~~~~~~~~~~i~vw~l~~ 284 (372)
... ..++.||++..
T Consensus 267 s~~------~~~v~v~~~~~ 280 (286)
T 1q7f_A 267 ASK------DYRLYIYRYVQ 280 (286)
T ss_dssp EET------TTEEEEEECSC
T ss_pred ECC------CCeEEEEEccc
Confidence 742 25789998753
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=92.31 E-value=5 Score=34.49 Aligned_cols=148 Identities=16% Similarity=0.002 Sum_probs=81.0
Q ss_pred EEEEEeecCCCceEEEEECCCCCccccccCCCCccccccCCCcccEE-ECCEEEEeeeCCcEEEEEecCCCeee-ccCCC
Q 017381 158 KIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVF-YKGSLYFTTPEPFSIVRFDLENGIWE-TPNDA 235 (372)
Q Consensus 158 kvv~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~-~~G~~y~~~~~~~~i~~yD~~~~~w~-~i~~p 235 (372)
.++...+.. ..+.++|.++++=...- ++. .....++. .++.+|.++.....+.+||.++.+-. .+.
T Consensus 66 ~Ly~stG~~--g~v~~iD~~Tgkv~~~~---l~~-----~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~-- 133 (268)
T 3nok_A 66 HFFESTGHQ--GTLRQLSLESAQPVWME---RLG-----NIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTR-- 133 (268)
T ss_dssp EEEEEETTT--TEEEECCSSCSSCSEEE---ECT-----TCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEE--
T ss_pred EEEEEcCCC--CEEEEEECCCCcEEeEE---CCC-----CcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEe--
Confidence 566555432 23889999887421110 111 12223444 45799999888888999999876543 332
Q ss_pred CccccccCCCcccccceeeeccCCCeEEEEEeeecCCccceEEEEEEcCCCCEEEEEecChHHHHHhhhhccCCCceEEE
Q 017381 236 NDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYC 315 (372)
Q Consensus 236 ~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~~~ 315 (372)
.+ .....+.. -+++|++..+ .. .|+.+|..+. ..+.+++... .+..+.....+.+
T Consensus 134 -------~~--~eGwGLt~---Dg~~L~vSdG------s~--~l~~iDp~T~-~v~~~I~V~~----~g~~v~~lNeLe~ 188 (268)
T 3nok_A 134 -------YS--GEGWGLCY---WNGKLVRSDG------GT--MLTFHEPDGF-ALVGAVQVKL----RGQPVELINELEC 188 (268)
T ss_dssp -------CS--SCCCCEEE---ETTEEEEECS------SS--EEEEECTTTC-CEEEEEECEE----TTEECCCEEEEEE
T ss_pred -------CC--CceeEEec---CCCEEEEECC------CC--EEEEEcCCCC-eEEEEEEeCC----CCcccccccccEE
Confidence 22 12234542 4667887764 12 4666675542 2222222110 0000001122232
Q ss_pred EeeCCEEEEEeecCCeEEEEECCCCceEE
Q 017381 316 FWHQGMICVCCYTWPEILYYNVARRTWHW 344 (372)
Q Consensus 316 ~~~~~~i~~~~~~~~~v~~yd~~~~~w~~ 344 (372)
.++.||+.....+.|.+-|+++++-..
T Consensus 189 --~dG~lyanvw~s~~I~vIDp~TG~V~~ 215 (268)
T 3nok_A 189 --ANGVIYANIWHSSDVLEIDPATGTVVG 215 (268)
T ss_dssp --ETTEEEEEETTCSEEEEECTTTCBEEE
T ss_pred --eCCEEEEEECCCCeEEEEeCCCCcEEE
Confidence 367899887777899999999996543
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=91.74 E-value=5.9 Score=34.15 Aligned_cols=194 Identities=11% Similarity=0.069 Sum_probs=98.9
Q ss_pred ecCcEEEEecCCCceEEEEeccccceeccCCCCCCCCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCCccccccC
Q 017381 108 SSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDID 187 (372)
Q Consensus 108 s~~Gll~~~~~~~~~~~v~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~~~~~ 187 (372)
..+|-+++.....+.++.+||.+++...+... .....+++++.+. +++.. ...+.+||..+++++.+.
T Consensus 22 ~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~---~~~~~i~~~~dG~---l~v~~----~~~l~~~d~~~g~~~~~~-- 89 (297)
T 3g4e_A 22 EVSNSLLFVDIPAKKVCRWDSFTKQVQRVTMD---APVSSVALRQSGG---YVATI----GTKFCALNWKEQSAVVLA-- 89 (297)
T ss_dssp TTTTEEEEEETTTTEEEEEETTTCCEEEEECS---SCEEEEEEBTTSS---EEEEE----TTEEEEEETTTTEEEEEE--
T ss_pred CCCCEEEEEECCCCEEEEEECCCCcEEEEeCC---CceEEEEECCCCC---EEEEE----CCeEEEEECCCCcEEEEE--
Confidence 33454445444457899999998876544321 1223445544332 33332 257899999998887665
Q ss_pred CCCccccccCCCcccEEE--CCEEEEeeeC-----------CcEEEEEecCCCeeeccCCCCccccccCCCcccccceee
Q 017381 188 GFPSMILSQSSHQEGVFY--KGSLYFTTPE-----------PFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVN 254 (372)
Q Consensus 188 ~~p~~~~~~~~~~~~v~~--~G~~y~~~~~-----------~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~ 254 (372)
..+. ..+. .....+.+ +|.+|+-+.. ...+..+|... +...+.... -.|. .+..
T Consensus 90 ~~~~-~~~~-~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~~~~~-----~~pn-----gi~~ 156 (297)
T 3g4e_A 90 TVDN-DKKN-NRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH-HVKKYFDQV-----DISN-----GLDW 156 (297)
T ss_dssp ECCT-TCSS-EEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS-CEEEEEEEE-----SBEE-----EEEE
T ss_pred ecCC-CCCC-CCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC-CEEEEeecc-----cccc-----ceEE
Confidence 2211 0010 11123333 5887765421 13577777653 222221000 0122 2221
Q ss_pred eccCCCe-EEEEEeeecCCccceEEEEEEc-CCCCEEE---EEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeecC
Q 017381 255 DGEESNK-LYLIGGVGRNGISTTMKLWELG-CGGNWIE---VERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTW 329 (372)
Q Consensus 255 e~~~~g~-L~vv~~~~~~~~~~~i~vw~l~-~~~~W~~---v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 329 (372)
. -+|+ ||++.. ....|.+|.++ ..+.... +..++... ....-.++..++.+++.....
T Consensus 157 s--pdg~~lyv~~~-----~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~----------~~p~g~~~d~~G~lwva~~~~ 219 (297)
T 3g4e_A 157 S--LDHKIFYYIDS-----LSYSVDAFDYDLQTGQISNRRSVYKLEKEE----------QIPDGMCIDAEGKLWVACYNG 219 (297)
T ss_dssp C--TTSCEEEEEEG-----GGTEEEEEEECTTTCCEEEEEEEEECCGGG----------CEEEEEEEBTTSCEEEEEETT
T ss_pred c--CCCCEEEEecC-----CCCcEEEEeccCCCCcccCcEEEEECCCCC----------CCCCeeEECCCCCEEEEEcCC
Confidence 1 3565 666653 23567777775 3444322 22232110 001122344456789988766
Q ss_pred CeEEEEECCCCceE
Q 017381 330 PEILYYNVARRTWH 343 (372)
Q Consensus 330 ~~v~~yd~~~~~w~ 343 (372)
+.|..||+++++..
T Consensus 220 ~~v~~~d~~tG~~~ 233 (297)
T 3g4e_A 220 GRVIRLDPVTGKRL 233 (297)
T ss_dssp TEEEEECTTTCCEE
T ss_pred CEEEEEcCCCceEE
Confidence 78999999987654
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=91.54 E-value=6.3 Score=34.08 Aligned_cols=205 Identities=13% Similarity=0.085 Sum_probs=96.1
Q ss_pred ecCc-EEEEecCCCceEEEEecc--ccceeccCCCCCCCCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCC-ccc
Q 017381 108 SSKG-LLCFSLPSSSSFLVCNLV--TLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQS-WSK 183 (372)
Q Consensus 108 s~~G-ll~~~~~~~~~~~v~NP~--t~~~~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~-W~~ 183 (372)
+-+| .++......+.+.+|+.. +++...+...+.......+++.+.+. .+++... ....+.+|+..++. .+.
T Consensus 46 spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~--~l~~~~~--~~~~i~~~d~~~~~~~~~ 121 (343)
T 1ri6_A 46 SPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQ--FVFVGSY--NAGNVSVTRLEDGLPVGV 121 (343)
T ss_dssp CTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSS--EEEEEET--TTTEEEEEEEETTEEEEE
T ss_pred CCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCC--EEEEEec--CCCeEEEEECCCCccccc
Confidence 4444 455544334678887765 66765443322111223444443322 3444332 23567888874322 222
Q ss_pred cccCCCCccccccCCCcccEEE--CC-EEEEeeeCCcEEEEEecCC-CeeeccC---CCCccccccCCCcccccceeeec
Q 017381 184 FDIDGFPSMILSQSSHQEGVFY--KG-SLYFTTPEPFSIVRFDLEN-GIWETPN---DANDHMTMMLPHELTFFRLVNDG 256 (372)
Q Consensus 184 ~~~~~~p~~~~~~~~~~~~v~~--~G-~~y~~~~~~~~i~~yD~~~-~~w~~i~---~p~~~~~~~~p~~~~~~~lv~e~ 256 (372)
.. ..+. ......+.+ +| .+|........+..||+.+ .+...+. .. .+.+.....+...
T Consensus 122 ~~--~~~~-----~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~- 186 (343)
T 1ri6_A 122 VD--VVEG-----LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVT-------TVEGAGPRHMVFH- 186 (343)
T ss_dssp EE--EECC-----CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEE-------CSTTCCEEEEEEC-
T ss_pred cc--cccC-----CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccc-------cCCCCCcceEEEC-
Confidence 22 1111 011112222 45 4555443445799999886 5554211 01 2221111122212
Q ss_pred cCCCe-EEEEEeeecCCccceEEEEEEcCC-CCEEEE---EecChHHHHHhhhhccCCCceE--EEEe-eCCEEEEEeec
Q 017381 257 EESNK-LYLIGGVGRNGISTTMKLWELGCG-GNWIEV---ERVPEMMCRKFMSVCYHNYDHV--YCFW-HQGMICVCCYT 328 (372)
Q Consensus 257 ~~~g~-L~vv~~~~~~~~~~~i~vw~l~~~-~~W~~v---~~lp~~~~~~~~~~~~~~~~~~--~~~~-~~~~i~~~~~~ 328 (372)
-+|+ |++.+. ....+.+|.++.. +.++.. ..++... ...... .++. .+..+|+....
T Consensus 187 -pdg~~l~~~~~-----~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~---------~~~~~~~~i~~s~dg~~l~v~~~~ 251 (343)
T 1ri6_A 187 -PNEQYAYCVNE-----LNSSVDVWELKDPHGNIECVQTLDMMPENF---------SDTRWAADIHITPDGRHLYACDRT 251 (343)
T ss_dssp -TTSSEEEEEET-----TTTEEEEEESSCTTSCCEEEEEEECSCTTC---------CSCCCEEEEEECTTSSEEEEEETT
T ss_pred -CCCCEEEEEeC-----CCCEEEEEEecCCCCcEEEEeeccccCccc---------cccCCccceEECCCCCEEEEEecC
Confidence 4666 555542 2357899998643 334433 2333210 001111 2232 34567776655
Q ss_pred CCeEEEEECC--CCceEECC
Q 017381 329 WPEILYYNVA--RRTWHWLP 346 (372)
Q Consensus 329 ~~~v~~yd~~--~~~w~~v~ 346 (372)
.+.+.+||++ +++++.+.
T Consensus 252 ~~~i~v~d~~~~~~~~~~~~ 271 (343)
T 1ri6_A 252 ASLITVFSVSEDGSVLSKEG 271 (343)
T ss_dssp TTEEEEEEECTTSCCEEEEE
T ss_pred CCEEEEEEEcCCCCceEEee
Confidence 6789999998 55666554
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.36 E-value=6.4 Score=34.57 Aligned_cols=196 Identities=6% Similarity=0.005 Sum_probs=92.4
Q ss_pred CCceEEEEeccccceeccCCCCC-CCCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCCccccccCCCCccccccC
Q 017381 119 SSSSFLVCNLVTLSSRTIDFPTY-PFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQS 197 (372)
Q Consensus 119 ~~~~~~v~NP~t~~~~~lP~~~~-~~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~ 197 (372)
.++.+.+||..++++..+..... ......+.+.+.... +.++.++ ....+.+||..++.-.... .+.. ..
T Consensus 77 ~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~--~d~~i~v~d~~~~~~~~~~--~~~~----~~ 147 (379)
T 3jrp_A 77 YDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG-PLLLVAS--SDGKVSVVEFKENGTTSPI--IIDA----HA 147 (379)
T ss_dssp TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEE--TTSEEEEEECCTTSCCCEE--EEEC----CT
T ss_pred cCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCC-CEEEEec--CCCcEEEEecCCCCceeeE--EecC----CC
Confidence 45789999999987554433321 112223444332102 2333332 2357889998876322111 0000 00
Q ss_pred CCcccEEE---------------CCEEEEeeeCCcEEEEEecCCCe--eeccCCCCccccccCCC-cccccceeeeccCC
Q 017381 198 SHQEGVFY---------------KGSLYFTTPEPFSIVRFDLENGI--WETPNDANDHMTMMLPH-ELTFFRLVNDGEES 259 (372)
Q Consensus 198 ~~~~~v~~---------------~G~~y~~~~~~~~i~~yD~~~~~--w~~i~~p~~~~~~~~p~-~~~~~~lv~e~~~~ 259 (372)
.....+.. +|...+.+.....|..||+.+.. +..+. . +.. ......+... -+
T Consensus 148 ~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~-------~~~h~~~v~~~~~s--p~ 217 (379)
T 3jrp_A 148 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLES-T-------LEGHSDWVRDVAWS--PT 217 (379)
T ss_dssp TCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEE-E-------ECCCSSCEEEEEEC--CC
T ss_pred CceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEE-E-------EecccCcEeEEEEC--CC
Confidence 01111111 46666666655678899986542 33221 0 111 1111122211 34
Q ss_pred ---CeEEEEEeeecCCccceEEEEEEcCCCC-EEEEEecChHHHHHhhhhccCCCceEEE--EeeCCEEEEEeecCCeEE
Q 017381 260 ---NKLYLIGGVGRNGISTTMKLWELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYC--FWHQGMICVCCYTWPEIL 333 (372)
Q Consensus 260 ---g~L~vv~~~~~~~~~~~i~vw~l~~~~~-W~~v~~lp~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~v~ 333 (372)
|++++.+.. ...+.+|.++.... +....... . .....+.+ +..++..++.....+.|.
T Consensus 218 ~~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~-~----------~~~~~v~~~~~s~~g~~l~~~~~dg~i~ 281 (379)
T 3jrp_A 218 VLLRSYLASVSQ-----DRTCIIWTQDNEQGPWKKTLLKE-E----------KFPDVLWRASWSLSGNVLALSGGDNKVT 281 (379)
T ss_dssp CSSSEEEEEEET-----TSCEEEEEESSTTSCCEEEESSS-S----------CCSSCEEEEEECSSSCCEEEEESSSSEE
T ss_pred CCCCCeEEEEeC-----CCEEEEEeCCCCCccceeeeecc-c----------cCCCcEEEEEEcCCCCEEEEecCCCcEE
Confidence 677766652 35789999975543 33221110 0 00112222 223333344443467799
Q ss_pred EEECC-CCceEECCCCC
Q 017381 334 YYNVA-RRTWHWLPSCP 349 (372)
Q Consensus 334 ~yd~~-~~~w~~v~~~~ 349 (372)
+||+. .++|..+....
T Consensus 282 iw~~~~~~~~~~~~~~~ 298 (379)
T 3jrp_A 282 LWKENLEGKWEPAGEVH 298 (379)
T ss_dssp EEEEEETTEEEEEEEEC
T ss_pred EEeCCCCCcccccccee
Confidence 99998 46777655433
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=91.19 E-value=6.7 Score=33.70 Aligned_cols=138 Identities=10% Similarity=-0.014 Sum_probs=76.9
Q ss_pred CccccccCCCCCee-eecCCCCCCCCCceEEEEecCcEEEEecCCCceEEEEeccccce-eccCCCCCCCCceeEEEEeC
Q 017381 76 DQYPLYDSTHGTWR-RLSLPYSLLLPSAATLLSSSKGLLCFSLPSSSSFLVCNLVTLSS-RTIDFPTYPFDFELLTLVST 153 (372)
Q Consensus 76 ~~~~~~d~~~~~w~-~l~~~~~~~~~~~~~~~~s~~Gll~~~~~~~~~~~v~NP~t~~~-~~lP~~~~~~~~~~~~~~~~ 153 (372)
..+..+|+..++-. .++++. .....-++-.++.++......+.+.|+|+.|.+. ..+|.. .+ .+.|+...
T Consensus 44 s~v~~iD~~tg~v~~~i~l~~----~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g-~~---~g~glt~D 115 (266)
T 2iwa_A 44 SSVRQVALQTGKVENIHKMDD----SYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ-MK---DGWGLATD 115 (266)
T ss_dssp CEEEEEETTTCCEEEEEECCT----TCCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEEEECC-SS---SCCEEEEC
T ss_pred CEEEEEECCCCCEEEEEecCC----CcceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEEECC-CC---CeEEEEEC
Confidence 44566787766543 344431 1111123334667777776678999999999773 445432 11 23444433
Q ss_pred CCCEEEEEEeecCCCceEEEEECCCCCcc-ccccCCCCccccccCCCcccEEECCEEEEeeeCCcEEEEEecCCCee
Q 017381 154 PSGYKIFMLFAKSFPNYAFVYDSTDQSWS-KFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENGIW 229 (372)
Q Consensus 154 ~~~ykvv~~~~~~~~~~~~vy~s~~~~W~-~~~~~~~p~~~~~~~~~~~~v~~~G~~y~~~~~~~~i~~yD~~~~~w 229 (372)
+. ++++.. ....+.++|+++.+=. .+. +.....+........+.+|.+|.-......|.+.|+++.+-
T Consensus 116 g~--~l~vs~---gs~~l~viD~~t~~v~~~I~---Vg~~~~p~~~~nele~~dg~lyvn~~~~~~V~vID~~tg~V 184 (266)
T 2iwa_A 116 GK--ILYGSD---GTSILYEIDPHTFKLIKKHN---VKYNGHRVIRLNELEYINGEVWANIWQTDCIARISAKDGTL 184 (266)
T ss_dssp SS--SEEEEC---SSSEEEEECTTTCCEEEEEE---CEETTEECCCEEEEEEETTEEEEEETTSSEEEEEETTTCCE
T ss_pred CC--EEEEEC---CCCeEEEEECCCCcEEEEEE---ECCCCcccccceeEEEECCEEEEecCCCCeEEEEECCCCcE
Confidence 32 455543 2568899999875421 111 11000010011223456899997776667899999998765
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=91.11 E-value=3.4 Score=35.57 Aligned_cols=144 Identities=10% Similarity=0.056 Sum_probs=72.8
Q ss_pred EEEEEeecCCCceEEEEECCCCC--ccccccCCCCccccccCCCcccEEECCEEEEeeeCCcEEEEEecCC-CeeeccCC
Q 017381 158 KIFMLFAKSFPNYAFVYDSTDQS--WSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLEN-GIWETPND 234 (372)
Q Consensus 158 kvv~~~~~~~~~~~~vy~s~~~~--W~~~~~~~~p~~~~~~~~~~~~v~~~G~~y~~~~~~~~i~~yD~~~-~~w~~i~~ 234 (372)
++++.+. ....+.++|.++++ |+... .-.. ......+.-+|.+++ +. ...+..||+.- ..|+. .
T Consensus 6 ~~lv~~~--~~~~v~~~d~~tG~~~w~~~~--~~~~-----~~~~~~~~pdG~ilv-s~-~~~V~~~d~~G~~~W~~-~- 72 (276)
T 3no2_A 6 HLLVGGS--GWNKIAIINKDTKEIVWEYPL--EKGW-----ECNSVAATKAGEILF-SY-SKGAKMITRDGRELWNI-A- 72 (276)
T ss_dssp EEEEECT--TCSEEEEEETTTTEEEEEEEC--CTTC-----CCCEEEECTTSCEEE-EC-BSEEEEECTTSCEEEEE-E-
T ss_pred cEEEeeC--CCCEEEEEECCCCeEEEEeCC--CccC-----CCcCeEECCCCCEEE-eC-CCCEEEECCCCCEEEEE-c-
Confidence 5665543 34678899987775 76654 1100 011112223788777 33 34699999842 24553 2
Q ss_pred CCccccccCCC--cccccceeeeccCCCeEEEEEeeecCCccceEEEEEEcCCCC--EEEEEecChHHHHHhhhhccCCC
Q 017381 235 ANDHMTMMLPH--ELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGN--WIEVERVPEMMCRKFMSVCYHNY 310 (372)
Q Consensus 235 p~~~~~~~~p~--~~~~~~lv~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~~~~~--W~~v~~lp~~~~~~~~~~~~~~~ 310 (372)
.+. .......+ .+|++++.... ..-.|+.++.+++ |+... ......... ..
T Consensus 73 --------~~~~~~~~~~~~~----~dG~~lv~~~~------~~~~v~~vd~~Gk~l~~~~~--~~~~~~~~~-----~~ 127 (276)
T 3no2_A 73 --------APAGCEMQTARIL----PDGNALVAWCG------HPSTILEVNMKGEVLSKTEF--ETGIERPHA-----QF 127 (276)
T ss_dssp --------CCTTCEEEEEEEC----TTSCEEEEEES------TTEEEEEECTTSCEEEEEEE--CCSCSSGGG-----SC
T ss_pred --------CCCCccccccEEC----CCCCEEEEecC------CCCEEEEEeCCCCEEEEEec--cCCCCcccc-----cc
Confidence 221 11112222 58888877541 1336788887776 65432 111000000 01
Q ss_pred ceEEEEeeCCEEEEEeecCCeEEEEECCCCc
Q 017381 311 DHVYCFWHQGMICVCCYTWPEILYYNVARRT 341 (372)
Q Consensus 311 ~~~~~~~~~~~i~~~~~~~~~v~~yd~~~~~ 341 (372)
..+ .+..++.+++.....+.|.+||.+ ++
T Consensus 128 ~~v-~~~~~G~~lv~~~~~~~v~~~d~~-G~ 156 (276)
T 3no2_A 128 RQI-NKNKKGNYLVPLFATSEVREIAPN-GQ 156 (276)
T ss_dssp SCC-EECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred cCc-eECCCCCEEEEecCCCEEEEECCC-CC
Confidence 112 222334455555556789999998 53
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=91.07 E-value=4.8 Score=35.62 Aligned_cols=194 Identities=8% Similarity=-0.057 Sum_probs=91.6
Q ss_pred EEEEeccccceeccCCCCCCCCceeEEEEeCCCCEEEEEEeecC-CCceEEEEE--CCCCCccccccCCCCccccccCCC
Q 017381 123 FLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKS-FPNYAFVYD--STDQSWSKFDIDGFPSMILSQSSH 199 (372)
Q Consensus 123 ~~v~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~-~~~~~~vy~--s~~~~W~~~~~~~~p~~~~~~~~~ 199 (372)
++.+|+.+++...+... .......+++.+.+ -.+++..... ....+.+|+ ..+++.+.+. ..+. ....
T Consensus 31 ~~~~d~~~g~~~~~~~~-~~~~p~~l~~spdg--~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~--~~~~----~~~~ 101 (361)
T 3scy_A 31 TFRFNEETGESLPLSDA-EVANPSYLIPSADG--KFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLN--TQKT----MGAD 101 (361)
T ss_dssp EEEEETTTCCEEEEEEE-ECSCCCSEEECTTS--SEEEEEECCSSTTCEEEEEEEETTTTEEEEEE--EEEC----SSSC
T ss_pred EEEEeCCCCCEEEeecc-cCCCCceEEECCCC--CEEEEEEccCCCCCcEEEEEEeCCCCcEEEee--Eecc----CCCC
Confidence 44467888887665543 11112234554332 2455544321 234565654 4446666554 2221 0011
Q ss_pred cccEEECCE-EEEeeeCCcEEEEEecCCC-eeeccC----CCCccccccCCCc--ccc-cceeeeccCCCe-EEEEEeee
Q 017381 200 QEGVFYKGS-LYFTTPEPFSIVRFDLENG-IWETPN----DANDHMTMMLPHE--LTF-FRLVNDGEESNK-LYLIGGVG 269 (372)
Q Consensus 200 ~~~v~~~G~-~y~~~~~~~~i~~yD~~~~-~w~~i~----~p~~~~~~~~p~~--~~~-~~lv~e~~~~g~-L~vv~~~~ 269 (372)
...+..+|. +|........+..||+.++ ....+. ..+.. . .|.. ... ..+... -+|+ |++.+.
T Consensus 102 p~~~~~dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~--~-~~~~~~~~~~~~~~~s--pdg~~l~~~~~-- 174 (361)
T 3scy_A 102 PCYLTTNGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSG--P-DKERQTMPHLHCVRIT--PDGKYLLADDL-- 174 (361)
T ss_dssp EEEEEECSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCC--S-CTTTCSSCCEEEEEEC--TTSSEEEEEET--
T ss_pred cEEEEECCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCC--C-CccccCCCcceEEEEC--CCCCEEEEEeC--
Confidence 122333776 4544445567899998643 222111 00000 0 0100 001 122212 4777 555432
Q ss_pred cCCccceEEEEEEcCCCC------EEEE-----EecChHHHHHhhhhccCCCceEEEEe-eCCEEEEEeecCCeEEEEEC
Q 017381 270 RNGISTTMKLWELGCGGN------WIEV-----ERVPEMMCRKFMSVCYHNYDHVYCFW-HQGMICVCCYTWPEILYYNV 337 (372)
Q Consensus 270 ~~~~~~~i~vw~l~~~~~------W~~v-----~~lp~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~v~~yd~ 337 (372)
....+.+|.++..+. .... ..++.. ......++. ++..+|+.....+.|.+||+
T Consensus 175 ---~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----------~~~~~~~~spdg~~l~v~~~~~~~v~v~~~ 240 (361)
T 3scy_A 175 ---GTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPG-----------SGPRHLIFNSDGKFAYLINEIGGTVIAFRY 240 (361)
T ss_dssp ---TTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTT-----------CCEEEEEECTTSSEEEEEETTTCEEEEEEE
T ss_pred ---CCCEEEEEEEcCCCCcccccceeecccccceecCCC-----------CCCeEEEEcCCCCEEEEEcCCCCeEEEEEe
Confidence 246889999976542 3222 112110 001122333 34467887766678999999
Q ss_pred CCCceEECC
Q 017381 338 ARRTWHWLP 346 (372)
Q Consensus 338 ~~~~w~~v~ 346 (372)
.+++++.+.
T Consensus 241 ~~g~~~~~~ 249 (361)
T 3scy_A 241 ADGMLDEIQ 249 (361)
T ss_dssp ETTEEEEEE
T ss_pred cCCceEEeE
Confidence 988775544
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.76 E-value=15 Score=36.98 Aligned_cols=192 Identities=13% Similarity=0.015 Sum_probs=96.9
Q ss_pred cCcEEEEecCCCceEEEEecccc----ceeccCCCCCCCCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCCcccc
Q 017381 109 SKGLLCFSLPSSSSFLVCNLVTL----SSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKF 184 (372)
Q Consensus 109 ~~Gll~~~~~~~~~~~v~NP~t~----~~~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~~ 184 (372)
.+|.|++.....+.++.+++... ....+..... ....+++++..++ +||+... ....+++++.....-+.+
T Consensus 434 ~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l-~~P~GLAvD~~~~--~LY~tD~--~~~~I~v~~ldG~~~~~l 508 (791)
T 3m0c_C 434 ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI-QAPDGLAVDWIHS--NIYWTDS--VLGTVSVADTKGVKRKTL 508 (791)
T ss_dssp TTTEEEEEETTTTEEEEEEC--------CEEEECSSC-SCCCEEEEETTTT--EEEEEET--TTTEEEEEETTSSSEEEE
T ss_pred cCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCC-CCcceeeeeecCC--cEEEEec--CCCeEEEEeCCCCeEEEE
Confidence 35666666554556666666542 1111111000 1123566764433 6776643 345788888876543333
Q ss_pred ccCCCCccccccCCCcccEEE---CCEEEEeeeCC-cEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCC
Q 017381 185 DIDGFPSMILSQSSHQEGVFY---KGSLYFTTPEP-FSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESN 260 (372)
Q Consensus 185 ~~~~~p~~~~~~~~~~~~v~~---~G~~y~~~~~~-~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g 260 (372)
.... + ..-.++++ +|.|||..... ..|..+++....-..+...+ ...|. .|+. ...+|
T Consensus 509 ~~~~-----l---~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~----l~~P~-----GLav-D~~~~ 570 (791)
T 3m0c_C 509 FREN-----G---SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN----IQWPN-----GITL-DLLSG 570 (791)
T ss_dssp EECT-----T---CCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSS----CSCEE-----EEEE-ETTTT
T ss_pred EeCC-----C---CCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCC----CCCce-----EEEE-ecCCC
Confidence 2001 1 12235666 58999987543 57999998754433321010 00222 2332 11478
Q ss_pred eEEEEEeeecCCccceEEEEEEcCCCCEEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeecCCeEEEEECCCC
Q 017381 261 KLYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARR 340 (372)
Q Consensus 261 ~L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~yd~~~~ 340 (372)
+||++... ...|.+..++.....+.+..- . .+ ...+.....++.||+.....+.|...|..++
T Consensus 571 ~LYwaD~~-----~~~I~~~d~dG~~~~~v~~~~-~-----~l------~~P~glav~~~~lYwtD~~~~~I~~~dk~tG 633 (791)
T 3m0c_C 571 RLYWVDSK-----LHSISSIDVNGGNRKTILEDE-K-----RL------AHPFSLAVFEDKVFWTDIINEAIFSANRLTG 633 (791)
T ss_dssp EEEEEETT-----TTEEEEEETTSCSCEEEEECT-T-----TT------SSEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred eEEEEeCC-----CCcEEEEecCCCceEEEecCC-C-----cc------CCCCEEEEeCCEEEEEECCCCEEEEEeCCCC
Confidence 99998651 244555544322224443221 0 00 0122333467789998877778888887665
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=90.75 E-value=6.9 Score=33.12 Aligned_cols=221 Identities=15% Similarity=0.101 Sum_probs=111.5
Q ss_pred ccccccCCCCCeeeecCCCCCCCCCceEEEEecCcEEEEecCCCceEEEEeccccceeccCCCCCCCCceeEEEEeCCCC
Q 017381 77 QYPLYDSTHGTWRRLSLPYSLLLPSAATLLSSSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSG 156 (372)
Q Consensus 77 ~~~~~d~~~~~w~~l~~~~~~~~~~~~~~~~s~~Gll~~~~~~~~~~~v~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~ 156 (372)
.+..+|+. ++...+.++... .....+....+|-+++.....+.+.++|+. ++...+...........++++..+
T Consensus 42 ~v~~~~~~-~~~~~~~~~~~~--~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g-- 115 (300)
T 2qc5_A 42 KISSLDQS-GRIKEFEVPTPD--AKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNG-- 115 (300)
T ss_dssp EEEEECTT-SCEEEEECSSTT--CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTT--
T ss_pred eEEEECCC-CceEEEECCCCC--CcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCC--
Confidence 34556776 555555443211 111223334566555554445789999998 776544322111222344444322
Q ss_pred EEEEEEeecCCCceEEEEECCCCCccccccCCCCccccccCCCcccEEE--CCEEEEeeeCCcEEEEEecCCCeeeccCC
Q 017381 157 YKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFY--KGSLYFTTPEPFSIVRFDLENGIWETPND 234 (372)
Q Consensus 157 ykvv~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~--~G~~y~~~~~~~~i~~yD~~~~~w~~i~~ 234 (372)
++++... ....+..|+.. ++..... .+. .. ....++.+ +|.+|+.......|..||. +.++..+.
T Consensus 116 -~l~v~~~--~~~~i~~~~~~-g~~~~~~---~~~-~~---~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~- 182 (300)
T 2qc5_A 116 -DIWFTQL--NGDRIGKLTAD-GTIYEYD---LPN-KG---SYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYP- 182 (300)
T ss_dssp -CEEEEET--TTTEEEEECTT-SCEEEEE---CSS-TT---CCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEE-
T ss_pred -CEEEEcc--CCCeEEEECCC-CCEEEcc---CCC-CC---CCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEee-
Confidence 3444332 23467888876 5554332 111 00 11223444 5788776655567999998 55555443
Q ss_pred CCccccccCCCcccc-cceeeeccCCCeEEEEEeeecCCccceEEEEEEcCCCCEEEEEecChHHHHHhhhhccCCCceE
Q 017381 235 ANDHMTMMLPHELTF-FRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHV 313 (372)
Q Consensus 235 p~~~~~~~~p~~~~~-~~lv~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~ 313 (372)
.|..... ..+... .+|.|++.... .. .|+.++..+...... ++.. . .....
T Consensus 183 --------~~~~~~~~~~i~~d--~~g~l~v~~~~-----~~--~i~~~~~~g~~~~~~-~~~~-----~-----~~~~~ 234 (300)
T 2qc5_A 183 --------LPTNAAAPVGITSG--NDGALWFVEIM-----GN--KIGRITTTGEISEYD-IPTP-----N-----ARPHA 234 (300)
T ss_dssp --------CSSTTCCEEEEEEC--TTSSEEEEETT-----TT--EEEEECTTCCEEEEE-CSST-----T-----CCEEE
T ss_pred --------CCCCCCCcceEEEC--CCCCEEEEccC-----CC--EEEEEcCCCcEEEEE-CCCC-----C-----CCceE
Confidence 2222111 233323 47889887641 12 355556555555432 2211 0 00111
Q ss_pred EEEeeCCEEEEEeecCCeEEEEECCCCceEEC
Q 017381 314 YCFWHQGMICVCCYTWPEILYYNVARRTWHWL 345 (372)
Q Consensus 314 ~~~~~~~~i~~~~~~~~~v~~yd~~~~~w~~v 345 (372)
.++..++.+|+.....+.|..||+ +++....
T Consensus 235 i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~ 265 (300)
T 2qc5_A 235 ITAGKNSEIWFTEWGANQIGRITN-DNTIQEY 265 (300)
T ss_dssp EEECSTTCEEEEETTTTEEEEECT-TSCEEEE
T ss_pred EEECCCCCEEEeccCCCeEEEECC-CCcEEEE
Confidence 233345668888766678999999 5665543
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=90.36 E-value=7.5 Score=37.47 Aligned_cols=201 Identities=7% Similarity=-0.039 Sum_probs=97.1
Q ss_pred CcEEEEecCCCceEEEEecccccee-ccCCCCCCCCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCCccccccCC
Q 017381 110 KGLLCFSLPSSSSFLVCNLVTLSSR-TIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDG 188 (372)
Q Consensus 110 ~Gll~~~~~~~~~~~v~NP~t~~~~-~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~~~~~~ 188 (372)
++++++.....+.+.|+|+.|++.. .++... ..+.+.+.+.++ .+++.. ....+.+||..+.+-+... .
T Consensus 166 ~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~---~p~~v~~SpDGr--~lyv~~---~dg~V~viD~~~~t~~~v~--~ 235 (567)
T 1qks_A 166 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY---AVHISRLSASGR--YLFVIG---RDGKVNMIDLWMKEPTTVA--E 235 (567)
T ss_dssp GGEEEEEETTTTEEEEEETTTCCEEEEEECSS---CEEEEEECTTSC--EEEEEE---TTSEEEEEETTSSSCCEEE--E
T ss_pred CceEEEEeCCCCeEEEEECCCCeEEEEEeCCC---CccceEECCCCC--EEEEEc---CCCeEEEEECCCCCCcEeE--E
Confidence 3466666556789999999998754 344221 112444433322 344433 2457999998522223333 2
Q ss_pred CCccccccCCCcccEEE-----CC-EEEEeeeCCcEEEEEecCCCeeec-cCCCCcccc--ccCCCcccccceeeeccCC
Q 017381 189 FPSMILSQSSHQEGVFY-----KG-SLYFTTPEPFSIVRFDLENGIWET-PNDANDHMT--MMLPHELTFFRLVNDGEES 259 (372)
Q Consensus 189 ~p~~~~~~~~~~~~v~~-----~G-~~y~~~~~~~~i~~yD~~~~~w~~-i~~p~~~~~--~~~p~~~~~~~lv~e~~~~ 259 (372)
++.+.- ....++. +| .+|..+.....+.++|..+.+-.. +...+...+ .+.|..+ ...++.. -+
T Consensus 236 i~~G~~----P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~r-va~i~~s--~~ 308 (567)
T 1qks_A 236 IKIGSE----ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPR-VAAILAS--HY 308 (567)
T ss_dssp EECCSE----EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCC-EEEEEEC--SS
T ss_pred EecCCC----CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCc-eEEEEEc--CC
Confidence 322111 1112333 56 566666666779999987654332 221100000 0001100 1123321 33
Q ss_pred CeEEEEEeeecCCccceEEEEEEcCCCC-EEEEEecChHHHHHhhhhccCCCceEEEE-eeCCEEEEEeecCCeEEEEEC
Q 017381 260 NKLYLIGGVGRNGISTTMKLWELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCF-WHQGMICVCCYTWPEILYYNV 337 (372)
Q Consensus 260 g~L~vv~~~~~~~~~~~i~vw~l~~~~~-W~~v~~lp~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~v~~yd~ 337 (372)
+..+++... ... .||..|-... ..++..++... ...-..+ ..+..+++....++.|.++|.
T Consensus 309 ~~~~vv~~~----~~g--~v~~vd~~~~~~~~v~~i~~~~-----------~~~d~~~~pdgr~~~va~~~sn~V~ViD~ 371 (567)
T 1qks_A 309 RPEFIVNVK----ETG--KILLVDYTDLNNLKTTEISAER-----------FLHDGGLDGSHRYFITAANARNKLVVIDT 371 (567)
T ss_dssp SSEEEEEET----TTT--EEEEEETTCSSEEEEEEEECCS-----------SEEEEEECTTSCEEEEEEGGGTEEEEEET
T ss_pred CCEEEEEec----CCC--eEEEEecCCCccceeeeeeccc-----------cccCceECCCCCEEEEEeCCCCeEEEEEC
Confidence 444444331 112 3444443332 44555553211 0111122 245567777767789999999
Q ss_pred CCCceEE
Q 017381 338 ARRTWHW 344 (372)
Q Consensus 338 ~~~~w~~ 344 (372)
++++...
T Consensus 372 ~t~kl~~ 378 (567)
T 1qks_A 372 KEGKLVA 378 (567)
T ss_dssp TTTEEEE
T ss_pred CCCcEEE
Confidence 9997653
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=90.25 E-value=7.7 Score=32.82 Aligned_cols=195 Identities=15% Similarity=0.101 Sum_probs=100.1
Q ss_pred EEecCcEEEEecCCCceEEEEeccccceeccCCCCCCCCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCCccccc
Q 017381 106 LSSSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFD 185 (372)
Q Consensus 106 ~~s~~Gll~~~~~~~~~~~v~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~~~ 185 (372)
....+|-+++.....+.+.++|+. ++....+..........++++.. . ++++... ....+.+|+.. +..+...
T Consensus 21 ~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~--g-~l~v~~~--~~~~i~~~~~~-g~~~~~~ 93 (299)
T 2z2n_A 21 TVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSD--G-EVWFTEN--AANKIGRITKK-GIIKEYT 93 (299)
T ss_dssp EECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTT--S-CEEEEET--TTTEEEEECTT-SCEEEEE
T ss_pred EECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCC--C-CEEEeCC--CCCeEEEECCC-CcEEEEe
Confidence 334566555554335789999998 77665543211112233444332 2 3444322 23467888875 4444333
Q ss_pred cCCCCccccccCCCcccEEE--CCEEEEeeeCCcEEEEEecCCCeeeccCCCCccccccCCCcc-cccceeeeccCCCeE
Q 017381 186 IDGFPSMILSQSSHQEGVFY--KGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHEL-TFFRLVNDGEESNKL 262 (372)
Q Consensus 186 ~~~~p~~~~~~~~~~~~v~~--~G~~y~~~~~~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~-~~~~lv~e~~~~g~L 262 (372)
.|. ......++.+ +|.+|+.......+..||+ +.+...+. .|... ....+... -+|+|
T Consensus 94 ---~~~----~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~---------~~~~~~~~~~i~~~--~~g~l 154 (299)
T 2z2n_A 94 ---LPN----PDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYE---------LPNKGSYPSFITLG--SDNAL 154 (299)
T ss_dssp ---CSS----TTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEE---------CSSTTCCEEEEEEC--TTSCE
T ss_pred ---CCC----cCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEec---------CCCCCCCCceEEEc--CCCCE
Confidence 111 0011223444 5788876655567999998 55555432 22111 11233323 57889
Q ss_pred EEEEeeecCCccceEEEEEEcCCCCEEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeecCCeEEEEECCCCce
Q 017381 263 YLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRTW 342 (372)
Q Consensus 263 ~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~yd~~~~~w 342 (372)
++.... .. .|+.++..++...+ .++.. . ....-.++..++.+|+.....+.|..||+ +++.
T Consensus 155 ~v~~~~-----~~--~i~~~~~~g~~~~~-~~~~~-----~-----~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~ 215 (299)
T 2z2n_A 155 WFTENQ-----NN--AIGRITESGDITEF-KIPTP-----A-----SGPVGITKGNDDALWFVEIIGNKIGRITT-SGEI 215 (299)
T ss_dssp EEEETT-----TT--EEEEECTTCCEEEE-ECSST-----T-----CCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE
T ss_pred EEEeCC-----CC--EEEEEcCCCcEEEe-eCCCC-----C-----CcceeEEECCCCCEEEEccCCceEEEECC-CCcE
Confidence 887531 12 45666664455543 22211 0 00111233344668888766678999999 7777
Q ss_pred EEC
Q 017381 343 HWL 345 (372)
Q Consensus 343 ~~v 345 (372)
..+
T Consensus 216 ~~~ 218 (299)
T 2z2n_A 216 TEF 218 (299)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=90.11 E-value=10 Score=34.04 Aligned_cols=204 Identities=11% Similarity=0.083 Sum_probs=97.6
Q ss_pred Cc-EEEEecCCCceEEEEeccccceeccC-C----CC-CCCCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCCcc
Q 017381 110 KG-LLCFSLPSSSSFLVCNLVTLSSRTID-F----PT-YPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWS 182 (372)
Q Consensus 110 ~G-ll~~~~~~~~~~~v~NP~t~~~~~lP-~----~~-~~~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~ 182 (372)
+| +++... .++.+.+||..+++...-. . +. .......+.+.+.+. .+++.++ ....+.+||..++...
T Consensus 93 ~~~~l~s~s-~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~--~~l~s~~--~dg~i~iwd~~~~~~~ 167 (402)
T 2aq5_A 93 NDNVIASGS-EDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQ--NVLLSAG--CDNVILVWDVGTGAAV 167 (402)
T ss_dssp CTTEEEEEE-TTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBT--TEEEEEE--TTSCEEEEETTTTEEE
T ss_pred CCCEEEEEe-CCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCC--CEEEEEc--CCCEEEEEECCCCCcc
Confidence 45 444333 4688999999887542211 0 00 011112333333221 2333333 2357889998877542
Q ss_pred ccccCCCCccccccCCCcccEEE--CCEEEEeeeCCcEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCC
Q 017381 183 KFDIDGFPSMILSQSSHQEGVFY--KGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESN 260 (372)
Q Consensus 183 ~~~~~~~p~~~~~~~~~~~~v~~--~G~~y~~~~~~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g 260 (372)
..- .... .......+.+ +|...+.+.....|..||+.+.+-...... .........+... -+|
T Consensus 168 ~~~--~~~~----~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-------~~~~~~~~~~~~~--~~~ 232 (402)
T 2aq5_A 168 LTL--GPDV----HPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDR-------PHEGTRPVHAVFV--SEG 232 (402)
T ss_dssp EEE--CTTT----CCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEEC-------SSCSSSCCEEEEC--STT
T ss_pred EEE--ecCC----CCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeecc-------CCCCCcceEEEEc--CCC
Confidence 211 0000 0011122333 566666666666799999987654332101 1111111122212 578
Q ss_pred eEEEEEeeecCCccceEEEEEEcCCCCEEEEEecChHHHHHhhhhccCCCceEEEEe-eCCEEEEEeecCCeEEEEECCC
Q 017381 261 KLYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFW-HQGMICVCCYTWPEILYYNVAR 339 (372)
Q Consensus 261 ~L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~v~~yd~~~ 339 (372)
++++++.. ......+.+|.+.....-.....++.. ......++. .++.+++.+...+.|.+||+.+
T Consensus 233 ~~l~~g~~--~~~d~~i~iwd~~~~~~~~~~~~~~~~-----------~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~ 299 (402)
T 2aq5_A 233 KILTTGFS--RMSERQVALWDTKHLEEPLSLQELDTS-----------SGVLLPFFDPDTNIVYLCGKGDSSIRYFEITS 299 (402)
T ss_dssp EEEEEEEC--TTCCEEEEEEETTBCSSCSEEEECCCC-----------SSCEEEEEETTTTEEEEEETTCSCEEEEEECS
T ss_pred cEEEEecc--CCCCceEEEEcCccccCCceEEeccCC-----------CceeEEEEcCCCCEEEEEEcCCCeEEEEEecC
Confidence 87777631 112467899987543331111122100 001111222 4556666665567899999998
Q ss_pred Cc--eEECC
Q 017381 340 RT--WHWLP 346 (372)
Q Consensus 340 ~~--w~~v~ 346 (372)
++ ...+.
T Consensus 300 ~~~~~~~l~ 308 (402)
T 2aq5_A 300 EAPFLHYLS 308 (402)
T ss_dssp STTCEEEEE
T ss_pred CCcceEeec
Confidence 87 55444
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=89.92 E-value=8.7 Score=32.97 Aligned_cols=158 Identities=11% Similarity=-0.020 Sum_probs=86.4
Q ss_pred eEEEEeCCCCEEEEEEeecCCCceEEEEECCCCCccccccCCCCccccccCCCcccE-EECCEEEEeeeCCcEEEEEecC
Q 017381 147 LLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGV-FYKGSLYFTTPEPFSIVRFDLE 225 (372)
Q Consensus 147 ~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v-~~~G~~y~~~~~~~~i~~yD~~ 225 (372)
++.+++. . +++...+......+.++|..+++=...- .++. .....++ ..++.+|..+.....+.+||..
T Consensus 25 Gl~~~~d--g-~Lyvstg~~~~s~v~~iD~~tg~v~~~i--~l~~-----~~fgeGi~~~g~~lyv~t~~~~~v~viD~~ 94 (266)
T 2iwa_A 25 GLVYAEN--D-TLFESTGLYGRSSVRQVALQTGKVENIH--KMDD-----SYFGEGLTLLNEKLYQVVWLKNIGFIYDRR 94 (266)
T ss_dssp EEEECST--T-EEEEEECSTTTCEEEEEETTTCCEEEEE--ECCT-----TCCEEEEEEETTEEEEEETTCSEEEEEETT
T ss_pred cEEEeCC--C-eEEEECCCCCCCEEEEEECCCCCEEEEE--ecCC-----CcceEEEEEeCCEEEEEEecCCEEEEEECC
Confidence 4555432 2 6777665555678999999998632221 1221 1222333 3466999998877889999998
Q ss_pred CCeee-ccCCCCccccccCCCcccccceeeeccCCCeEEEEEeeecCCccceEEEEEEcCCCCEEEEEecChHHHHHhhh
Q 017381 226 NGIWE-TPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMS 304 (372)
Q Consensus 226 ~~~w~-~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~lp~~~~~~~~~ 304 (372)
+.+-. .+. .+ ......+.. -+++||+..+ .. .|+.+|..+. ..+.+++.... +
T Consensus 95 t~~v~~~i~---------~g-~~~g~glt~---Dg~~l~vs~g------s~--~l~viD~~t~-~v~~~I~Vg~~----~ 148 (266)
T 2iwa_A 95 TLSNIKNFT---------HQ-MKDGWGLAT---DGKILYGSDG------TS--ILYEIDPHTF-KLIKKHNVKYN----G 148 (266)
T ss_dssp TTEEEEEEE---------CC-SSSCCEEEE---CSSSEEEECS------SS--EEEEECTTTC-CEEEEEECEET----T
T ss_pred CCcEEEEEE---------CC-CCCeEEEEE---CCCEEEEECC------CC--eEEEEECCCC-cEEEEEEECCC----C
Confidence 76443 222 22 012233431 3455776543 22 4666665432 23333321100 0
Q ss_pred hccCCCceEEEEeeCCEEEEEeecCCeEEEEECCCCce
Q 017381 305 VCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRTW 342 (372)
Q Consensus 305 ~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~yd~~~~~w 342 (372)
........+.+. ++.+|+.....+.|.+-|+++++-
T Consensus 149 ~p~~~~nele~~--dg~lyvn~~~~~~V~vID~~tg~V 184 (266)
T 2iwa_A 149 HRVIRLNELEYI--NGEVWANIWQTDCIARISAKDGTL 184 (266)
T ss_dssp EECCCEEEEEEE--TTEEEEEETTSSEEEEEETTTCCE
T ss_pred cccccceeEEEE--CCEEEEecCCCCeEEEEECCCCcE
Confidence 000001122322 678998877778999999999865
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=89.53 E-value=2.8 Score=36.07 Aligned_cols=136 Identities=10% Similarity=-0.138 Sum_probs=75.8
Q ss_pred cccccCCCCCee-eecCCCCCCCCCceEEEEecCcEEEEecCCCceEEEEeccccce-eccCCCCCCCCceeEEEEeCCC
Q 017381 78 YPLYDSTHGTWR-RLSLPYSLLLPSAATLLSSSKGLLCFSLPSSSSFLVCNLVTLSS-RTIDFPTYPFDFELLTLVSTPS 155 (372)
Q Consensus 78 ~~~~d~~~~~w~-~l~~~~~~~~~~~~~~~~s~~Gll~~~~~~~~~~~v~NP~t~~~-~~lP~~~~~~~~~~~~~~~~~~ 155 (372)
+..+|+..++-. .+ ++. .....-++..++-|+......+.++|+|+.|.+. .++|..+ .+.|+...+
T Consensus 77 v~~iD~~Tgkv~~~~-l~~----~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~-----eGwGLt~Dg- 145 (268)
T 3nok_A 77 LRQLSLESAQPVWME-RLG----NIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYSG-----EGWGLCYWN- 145 (268)
T ss_dssp EEECCSSCSSCSEEE-ECT----TCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEECSS-----CCCCEEEET-
T ss_pred EEEEECCCCcEEeEE-CCC----CcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCCC-----ceeEEecCC-
Confidence 556677665432 23 331 1111224445666666665678999999999874 4555422 123333322
Q ss_pred CEEEEEEeecCCCceEEEEECCCCCccccccCCCCccccccCCCcccEEECCEEEEeeeCCcEEEEEecCCCeee
Q 017381 156 GYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWE 230 (372)
Q Consensus 156 ~ykvv~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~~y~~~~~~~~i~~yD~~~~~w~ 230 (372)
.++++.. ....+.++|+++.+=...- .+.....+......-.+.+|.+|.-.+....|.++|+++.+-.
T Consensus 146 -~~L~vSd---Gs~~l~~iDp~T~~v~~~I--~V~~~g~~v~~lNeLe~~dG~lyanvw~s~~I~vIDp~TG~V~ 214 (268)
T 3nok_A 146 -GKLVRSD---GGTMLTFHEPDGFALVGAV--QVKLRGQPVELINELECANGVIYANIWHSSDVLEIDPATGTVV 214 (268)
T ss_dssp -TEEEEEC---SSSEEEEECTTTCCEEEEE--ECEETTEECCCEEEEEEETTEEEEEETTCSEEEEECTTTCBEE
T ss_pred -CEEEEEC---CCCEEEEEcCCCCeEEEEE--EeCCCCcccccccccEEeCCEEEEEECCCCeEEEEeCCCCcEE
Confidence 2666654 2568899999986532111 1111001100112234569999977766778999999987653
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=89.39 E-value=8.8 Score=32.30 Aligned_cols=197 Identities=13% Similarity=-0.005 Sum_probs=101.0
Q ss_pred EecCcEEEEecCCCceEEEEeccccceeccCCCCCCCCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCCcccccc
Q 017381 107 SSSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDI 186 (372)
Q Consensus 107 ~s~~Gll~~~~~~~~~~~v~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~~~~ 186 (372)
...+|.|++.....+.+.++++.++....+-.... ....+++++..++ ++++... ....+.+++.....-+...
T Consensus 44 d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~-~~p~~ia~d~~~~--~lyv~d~--~~~~I~~~~~~g~~~~~~~- 117 (267)
T 1npe_A 44 DCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDL-GSPEGIALDHLGR--TIFWTDS--QLDRIEVAKMDGTQRRVLF- 117 (267)
T ss_dssp ETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTC-CCEEEEEEETTTT--EEEEEET--TTTEEEEEETTSCSCEEEE-
T ss_pred ecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCC-CCccEEEEEecCC--eEEEEEC--CCCEEEEEEcCCCCEEEEE-
Confidence 33467777766556789999998765433321111 1223556654322 5665542 3457888887643322221
Q ss_pred CCCCccccccCCCcccEEE---CCEEEEeeeC--CcEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCe
Q 017381 187 DGFPSMILSQSSHQEGVFY---KGSLYFTTPE--PFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNK 261 (372)
Q Consensus 187 ~~~p~~~~~~~~~~~~v~~---~G~~y~~~~~--~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~ 261 (372)
+. .+ ....++.+ +|.+||.... ...|..+++....-..+...+ ...|. .+... ..++.
T Consensus 118 ---~~-~~---~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~----~~~P~-----gia~d-~~~~~ 180 (267)
T 1npe_A 118 ---DT-GL---VNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDN----LGLPN-----GLTFD-AFSSQ 180 (267)
T ss_dssp ---CS-SC---SSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTT----CSCEE-----EEEEE-TTTTE
T ss_pred ---EC-CC---CCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECC----CCCCc-----EEEEc-CCCCE
Confidence 11 00 11234444 5899998754 356888887644322221000 00122 22212 02578
Q ss_pred EEEEEeeecCCccceEEEEEEcCCCCEEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeecCCeEEEEECCCCc
Q 017381 262 LYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRT 341 (372)
Q Consensus 262 L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~yd~~~~~ 341 (372)
||+.... ...|.++ +.++.-... .++ . . .........++.+|+.....+.|..+|+++++
T Consensus 181 lyv~d~~-----~~~I~~~--~~~g~~~~~-~~~-~-----~------~~P~gi~~d~~~lyva~~~~~~v~~~d~~~g~ 240 (267)
T 1npe_A 181 LCWVDAG-----THRAECL--NPAQPGRRK-VLE-G-----L------QYPFAVTSYGKNLYYTDWKTNSVIAMDLAISK 240 (267)
T ss_dssp EEEEETT-----TTEEEEE--ETTEEEEEE-EEE-C-----C------CSEEEEEEETTEEEEEETTTTEEEEEETTTTE
T ss_pred EEEEECC-----CCEEEEE--ecCCCceEE-Eec-C-----C------CCceEEEEeCCEEEEEECCCCeEEEEeCCCCC
Confidence 8888652 2344444 443321110 111 0 0 01122233578899988777899999999876
Q ss_pred e-EECC
Q 017381 342 W-HWLP 346 (372)
Q Consensus 342 w-~~v~ 346 (372)
. ..++
T Consensus 241 ~~~~i~ 246 (267)
T 1npe_A 241 EMDTFH 246 (267)
T ss_dssp EEEEEC
T ss_pred ceEEEc
Confidence 5 3444
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=88.91 E-value=11 Score=32.74 Aligned_cols=201 Identities=10% Similarity=0.048 Sum_probs=97.5
Q ss_pred EecCcEEEEecCCCceEEEEecccccee-ccCCCCCC-------CCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCC
Q 017381 107 SSSKGLLCFSLPSSSSFLVCNLVTLSSR-TIDFPTYP-------FDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTD 178 (372)
Q Consensus 107 ~s~~Gll~~~~~~~~~~~v~NP~t~~~~-~lP~~~~~-------~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~ 178 (372)
...+..+++.....+.+.++|+.+++.. .++..... .....+++.+.++ ++++... .....+.+||..+
T Consensus 97 s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~--~l~~~~~-~~~~~i~~~d~~~ 173 (353)
T 3vgz_A 97 NNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATN--TVYISGI-GKESVIWVVDGGN 173 (353)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTT--EEEEEEE-SSSCEEEEEETTT
T ss_pred CCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCC--EEEEEec-CCCceEEEEcCCC
Confidence 3334456665555679999999998853 33321111 1123455554333 3444332 2345789999886
Q ss_pred CCccccccCCCCccccccCCCcccEEE-CCEEEEeeeCCcEEEEEecCCCeeec-cCCCCccccccCCCcccccceeeec
Q 017381 179 QSWSKFDIDGFPSMILSQSSHQEGVFY-KGSLYFTTPEPFSIVRFDLENGIWET-PNDANDHMTMMLPHELTFFRLVNDG 256 (372)
Q Consensus 179 ~~W~~~~~~~~p~~~~~~~~~~~~v~~-~G~~y~~~~~~~~i~~yD~~~~~w~~-i~~p~~~~~~~~p~~~~~~~lv~e~ 256 (372)
++=... ++. . .......++. +|...+++.....+..||+.+.+-.. +..+.. -+.. ....+...
T Consensus 174 ~~~~~~----~~~--~-~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~-----~~~~-~~~~~~~s- 239 (353)
T 3vgz_A 174 IKLKTA----IQN--T-GKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDD-----GKEH-FFINISLD- 239 (353)
T ss_dssp TEEEEE----ECC--C-CTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCS-----SSCC-CEEEEEEE-
T ss_pred CceEEE----ecC--C-CCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCC-----CCCc-ccceEEEC-
Confidence 542211 110 0 0011112222 55544444445578899998775543 221100 0111 11112211
Q ss_pred cCCCe-EEEEEeeecCCccceEEEEEEcCCCCEEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeecCCeEEEE
Q 017381 257 EESNK-LYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYY 335 (372)
Q Consensus 257 ~~~g~-L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~y 335 (372)
-+|+ |++... ....+.+|.++ .++-.....++. ...+..-.+++.+|+.....+.|.+|
T Consensus 240 -~dg~~l~~~~~-----~~~~v~~~d~~-~~~~~~~~~~~~-------------~~~~~~s~dg~~l~v~~~~~~~v~~~ 299 (353)
T 3vgz_A 240 -TARQRAFITDS-----KAAEVLVVDTR-NGNILAKVAAPE-------------SLAVLFNPARNEAYVTHRQAGKVSVI 299 (353)
T ss_dssp -TTTTEEEEEES-----SSSEEEEEETT-TCCEEEEEECSS-------------CCCEEEETTTTEEEEEETTTTEEEEE
T ss_pred -CCCCEEEEEeC-----CCCEEEEEECC-CCcEEEEEEcCC-------------CceEEECCCCCEEEEEECCCCeEEEE
Confidence 3555 655542 23567777653 233222222211 11122223456688887667889999
Q ss_pred ECCCCceEE
Q 017381 336 NVARRTWHW 344 (372)
Q Consensus 336 d~~~~~w~~ 344 (372)
|+++++...
T Consensus 300 d~~~~~~~~ 308 (353)
T 3vgz_A 300 DAKSYKVVK 308 (353)
T ss_dssp ETTTTEEEE
T ss_pred ECCCCeEEE
Confidence 999887654
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=88.79 E-value=8.8 Score=33.91 Aligned_cols=141 Identities=10% Similarity=0.034 Sum_probs=62.1
Q ss_pred CCceEEEEeccccceeccCCCCCC-CCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCC-ccccccCCCCcccccc
Q 017381 119 SSSSFLVCNLVTLSSRTIDFPTYP-FDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQS-WSKFDIDGFPSMILSQ 196 (372)
Q Consensus 119 ~~~~~~v~NP~t~~~~~lP~~~~~-~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~-W~~~~~~~~p~~~~~~ 196 (372)
.++.+.+||..++.+..+..+... .....+.+.+.+ +.++.++ ....+.+||..++. |.... .+.. .
T Consensus 31 ~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~---~~l~s~s--~d~~v~vwd~~~~~~~~~~~--~~~~----~ 99 (377)
T 3dwl_C 31 ATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKS---NRIVTCS--QDRNAYVYEKRPDGTWKQTL--VLLR----L 99 (377)
T ss_dssp SSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTT---CCEEEEE--TTSSEEEC------CCCCEE--ECCC----C
T ss_pred CCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCC---CEEEEEe--CCCeEEEEEcCCCCceeeee--Eecc----c
Confidence 457888999998866555444321 112234443332 2333333 23568899988876 65443 1111 0
Q ss_pred CCCcccEEE--CCEEEEeeeCCcEEEEEecCCCe-eeccCCCCccccccCCCcccccceeeeccCCCeEEEEEeeecCCc
Q 017381 197 SSHQEGVFY--KGSLYFTTPEPFSIVRFDLENGI-WETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGI 273 (372)
Q Consensus 197 ~~~~~~v~~--~G~~y~~~~~~~~i~~yD~~~~~-w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~~~ 273 (372)
......+.+ +|...+.+.....|..||+.+.+ |..+..-. .+.......+... -+|++++.+..
T Consensus 100 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~------~~h~~~v~~~~~~--~~~~~l~~~~~----- 166 (377)
T 3dwl_C 100 NRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLK------RPLRSTILSLDWH--PNNVLLAAGCA----- 166 (377)
T ss_dssp SSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEEC------SSCCSCEEEEEEC--TTSSEEEEEES-----
T ss_pred CCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEee------cccCCCeEEEEEc--CCCCEEEEEeC-----
Confidence 011112222 45555555555568889987654 22211000 1111111122211 36776666542
Q ss_pred cceEEEEEEc
Q 017381 274 STTMKLWELG 283 (372)
Q Consensus 274 ~~~i~vw~l~ 283 (372)
...+.+|.+.
T Consensus 167 d~~i~iwd~~ 176 (377)
T 3dwl_C 167 DRKAYVLSAY 176 (377)
T ss_dssp SSCEEEEEEC
T ss_pred CCEEEEEEEE
Confidence 2578999985
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=88.57 E-value=14 Score=33.39 Aligned_cols=197 Identities=11% Similarity=0.073 Sum_probs=96.8
Q ss_pred cCcEEEEecCCCceEEEEeccccceeccCCCC-C-CCC--ceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCCcccc
Q 017381 109 SKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPT-Y-PFD--FELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKF 184 (372)
Q Consensus 109 ~~Gll~~~~~~~~~~~v~NP~t~~~~~lP~~~-~-~~~--~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~~ 184 (372)
.+|.+++....++.+.+||+.+++.....+.. . ... ...+.+. .+. ++++.+. ....+.+||..+++-...
T Consensus 132 ~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~--~~~-~~~~s~~--~d~~v~~~d~~~~~~~~~ 206 (433)
T 3bws_A 132 DNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIP--EHN-ELWVSQM--QANAVHVFDLKTLAYKAT 206 (433)
T ss_dssp SSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEG--GGT-EEEEEEG--GGTEEEEEETTTCCEEEE
T ss_pred CCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEc--CCC-EEEEEEC--CCCEEEEEECCCceEEEE
Confidence 36666665555578999999998876543321 1 111 1123331 122 4554443 235788999887643221
Q ss_pred ccCCCCccccccCCCcccEEE--CC-EEEEeeeCCcEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCe
Q 017381 185 DIDGFPSMILSQSSHQEGVFY--KG-SLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNK 261 (372)
Q Consensus 185 ~~~~~p~~~~~~~~~~~~v~~--~G-~~y~~~~~~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~ 261 (372)
- +. .......+.+ +| .+|..+.....|..||+.+.+..... + .... ...+... -+|+
T Consensus 207 ~----~~----~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~-~-------~~~~--~~~~~~~--~~g~ 266 (433)
T 3bws_A 207 V----DL----TGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKT-D-------KIGL--PRGLLLS--KDGK 266 (433)
T ss_dssp E----EC----SSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEC-C-------CCSE--EEEEEEC--TTSS
T ss_pred E----cC----CCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEe-c-------CCCC--ceEEEEc--CCCC
Confidence 1 00 0011112222 34 45555545567999999877654321 1 1111 1122211 4665
Q ss_pred EEEEEeeecCC---ccceEEEEEEcCCCCEEEEEecChHHHHHhhhhccCCCceEEEEe-eCCEEEEEeecCCeEEEEEC
Q 017381 262 LYLIGGVGRNG---ISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFW-HQGMICVCCYTWPEILYYNV 337 (372)
Q Consensus 262 L~vv~~~~~~~---~~~~i~vw~l~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~v~~yd~ 337 (372)
.++++...... ....+.+|.+.. ++-......+. .....++. .++.+++.....+.+.+||+
T Consensus 267 ~l~~~~~~~~~~~~~dg~i~~~d~~~-~~~~~~~~~~~-------------~~~~~~~~~~g~~l~~~~~~~~~v~v~d~ 332 (433)
T 3bws_A 267 ELYIAQFSASNQESGGGRLGIYSMDK-EKLIDTIGPPG-------------NKRHIVSGNTENKIYVSDMCCSKIEVYDL 332 (433)
T ss_dssp EEEEEEEESCTTCSCCEEEEEEETTT-TEEEEEEEEEE-------------CEEEEEECSSTTEEEEEETTTTEEEEEET
T ss_pred EEEEEECCCCccccCCCeEEEEECCC-CcEEeeccCCC-------------CcceEEECCCCCEEEEEecCCCEEEEEEC
Confidence 55544432111 124678887643 22111111110 00111222 34567787666778999999
Q ss_pred CCCceEE
Q 017381 338 ARRTWHW 344 (372)
Q Consensus 338 ~~~~w~~ 344 (372)
++++...
T Consensus 333 ~~~~~~~ 339 (433)
T 3bws_A 333 KEKKVQK 339 (433)
T ss_dssp TTTEEEE
T ss_pred CCCcEEE
Confidence 9876543
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=88.36 E-value=22 Score=35.48 Aligned_cols=193 Identities=9% Similarity=0.088 Sum_probs=96.0
Q ss_pred EecCcEEEEecCCCceEEEEeccccceeccCCCCC-CC-CceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCCcccc
Q 017381 107 SSSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTY-PF-DFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKF 184 (372)
Q Consensus 107 ~s~~Gll~~~~~~~~~~~v~NP~t~~~~~lP~~~~-~~-~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~~ 184 (372)
...+|-+.+... +.++++||.++++..++.... .. .....++...... ++.+ +.. ...+..|+..+++++..
T Consensus 457 ~d~~g~lwigt~--~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g-~lWi-gt~--~~Gl~~~~~~~~~~~~~ 530 (781)
T 3v9f_A 457 EDKNKKIWIGTH--AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEG-RFWI-GTF--GGGVGIYTPDMQLVRKF 530 (781)
T ss_dssp ECTTSEEEEEET--TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTC-CEEE-EES--SSCEEEECTTCCEEEEE
T ss_pred ECCCCCEEEEEC--CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCC-CEEE-EEc--CCCEEEEeCCCCeEEEc
Confidence 344565555442 568889999988876653321 00 1111122211222 2332 211 13477888888888766
Q ss_pred ccCCCCccccccCCCcccEEE--CCEEEEeeeCCcEE-EEEecCCCeeeccCCC-CccccccCCCcccccceeeeccCCC
Q 017381 185 DIDGFPSMILSQSSHQEGVFY--KGSLYFTTPEPFSI-VRFDLENGIWETPNDA-NDHMTMMLPHELTFFRLVNDGEESN 260 (372)
Q Consensus 185 ~~~~~p~~~~~~~~~~~~v~~--~G~~y~~~~~~~~i-~~yD~~~~~w~~i~~p-~~~~~~~~p~~~~~~~lv~e~~~~g 260 (372)
. . +. .++. .....++. +|.+ |++.. ..+ ..||+.++++...... + +|.... ..++.+ .+|
T Consensus 531 ~--~-~~-~l~~-~~i~~i~~d~~g~l-Wi~T~-~Glv~~~d~~~~~~~~~~~~~g------l~~~~i-~~i~~d--~~g 594 (781)
T 3v9f_A 531 N--Q-YE-GFCS-NTINQIYRSSKGQM-WLATG-EGLVCFPSARNFDYQVFQRKEG------LPNTHI-RAISED--KNG 594 (781)
T ss_dssp C--T-TT-TCSC-SCEEEEEECTTSCE-EEEET-TEEEEESCTTTCCCEEECGGGT------CSCCCC-CEEEEC--SSS
T ss_pred c--C-CC-CCCC-CeeEEEEECCCCCE-EEEEC-CCceEEECCCCCcEEEccccCC------CCCceE-EEEEEC--CCC
Confidence 4 1 11 1211 11223444 4665 45544 457 8999998887764311 1 444332 234423 578
Q ss_pred eEEEEEeeecCCccceEEEEEEcCCCC-EEEEEecChHHHHHhhhhccCCCc-eEEEEeeCCEEEEEeecCCeEEEEECC
Q 017381 261 KLYLIGGVGRNGISTTMKLWELGCGGN-WIEVERVPEMMCRKFMSVCYHNYD-HVYCFWHQGMICVCCYTWPEILYYNVA 338 (372)
Q Consensus 261 ~L~vv~~~~~~~~~~~i~vw~l~~~~~-W~~v~~lp~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~v~~yd~~ 338 (372)
.|++.+. . .+..+++.+. +.....-. . +.. .... ...+...++.+++.+ .+.+..||++
T Consensus 595 ~lW~~t~-------~--Gl~~~~~~~~~~~~~~~~d-G-----l~~--~~f~~~~~~~~~~G~l~~g~--~~Gl~~f~p~ 655 (781)
T 3v9f_A 595 NIWASTN-------T--GISCYITSKKCFYTYDHSN-N-----IPQ--GSFISGCVTKDHNGLIYFGS--INGLCFFNPD 655 (781)
T ss_dssp CEEEECS-------S--CEEEEETTTTEEEEECGGG-T-----CCS--SCEEEEEEEECTTSCEEEEE--TTEEEEECSC
T ss_pred CEEEEcC-------C--ceEEEECCCCceEEecccC-C-----ccc--cccccCceEECCCCEEEEEC--CCceEEEChh
Confidence 8988753 1 2455555544 54332211 0 000 0011 112234567788866 4568888887
Q ss_pred CC
Q 017381 339 RR 340 (372)
Q Consensus 339 ~~ 340 (372)
+-
T Consensus 656 ~~ 657 (781)
T 3v9f_A 656 IA 657 (781)
T ss_dssp CG
T ss_pred hc
Confidence 53
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=88.28 E-value=11 Score=32.20 Aligned_cols=195 Identities=10% Similarity=0.082 Sum_probs=91.5
Q ss_pred ecCcEEEEecCCCceEEEEeccccceec-cCCC---CCCCCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCCccc
Q 017381 108 SSKGLLCFSLPSSSSFLVCNLVTLSSRT-IDFP---TYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSK 183 (372)
Q Consensus 108 s~~Gll~~~~~~~~~~~v~NP~t~~~~~-lP~~---~~~~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~ 183 (372)
+.+|-+++... ++.+.+||..+++... +... ........+.+.+. . +.+++++ ....+.+|+..++....
T Consensus 60 ~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~-~~l~~~~--~d~~i~~~d~~~~~~~~ 133 (337)
T 1gxr_A 60 SNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD--G-CTLIVGG--EASTLSIWDLAAPTPRI 133 (337)
T ss_dssp CSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTT--S-SEEEEEE--SSSEEEEEECCCC--EE
T ss_pred ecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCC--C-CEEEEEc--CCCcEEEEECCCCCcce
Confidence 44553333333 5889999998765322 1111 11111223334332 2 2333332 23578999998877544
Q ss_pred cccCCCCccccccCCCcccEEE--CCEEEEeeeCCcEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCe
Q 017381 184 FDIDGFPSMILSQSSHQEGVFY--KGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNK 261 (372)
Q Consensus 184 ~~~~~~p~~~~~~~~~~~~v~~--~G~~y~~~~~~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~ 261 (372)
.. .+.. .......+.+ +|...+.+.....+..||+.+.+....... ..... ..+... -+|+
T Consensus 134 ~~--~~~~----~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~-------~~~~i--~~~~~~--~~~~ 196 (337)
T 1gxr_A 134 KA--ELTS----SAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQG-------HTDGA--SCIDIS--NDGT 196 (337)
T ss_dssp EE--EEEC----SSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-------CSSCE--EEEEEC--TTSS
T ss_pred ee--eccc----CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeec-------ccCce--EEEEEC--CCCC
Confidence 33 1111 0011112222 566655665555699999987654432101 11111 122211 3676
Q ss_pred EEEEEeeecCCccceEEEEEEcCCCCEEEEEecChHHHHHhhhhccCCCceEE--EEeeCCEEEEEeecCCeEEEEECCC
Q 017381 262 LYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVY--CFWHQGMICVCCYTWPEILYYNVAR 339 (372)
Q Consensus 262 L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~v~~yd~~~ 339 (372)
+++++.. ...+.+|.+..... +..+.. ...+. .+..++..++.+...+.+.+||+++
T Consensus 197 ~l~~~~~-----dg~i~~~d~~~~~~---~~~~~~-------------~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~ 255 (337)
T 1gxr_A 197 KLWTGGL-----DNTVRSWDLREGRQ---LQQHDF-------------TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNK 255 (337)
T ss_dssp EEEEEET-----TSEEEEEETTTTEE---EEEEEC-------------SSCEEEEEECTTSSEEEEEETTSCEEEEETTS
T ss_pred EEEEEec-----CCcEEEEECCCCce---EeeecC-------------CCceEEEEECCCCCEEEEEcCCCcEEEEECCC
Confidence 6666541 35788997753221 111110 01122 2223333444444556799999998
Q ss_pred CceEECC
Q 017381 340 RTWHWLP 346 (372)
Q Consensus 340 ~~w~~v~ 346 (372)
++-..+.
T Consensus 256 ~~~~~~~ 262 (337)
T 1gxr_A 256 PDKYQLH 262 (337)
T ss_dssp SCEEEEC
T ss_pred CCeEEEc
Confidence 7655543
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=88.26 E-value=13 Score=32.88 Aligned_cols=182 Identities=10% Similarity=-0.003 Sum_probs=89.2
Q ss_pred CceEEEEeccccceeccCCC-CCCCCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCCccccccCCCCccccccCC
Q 017381 120 SSSFLVCNLVTLSSRTIDFP-TYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQSS 198 (372)
Q Consensus 120 ~~~~~v~NP~t~~~~~lP~~-~~~~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~ 198 (372)
++.+.+||..+++....-.. ........+.+.+. +-+.++.++ ....+.+||..++...... .... ...
T Consensus 95 dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~~l~s~~--~d~~i~iwd~~~~~~~~~~--~~~~----~~~ 164 (383)
T 3ei3_B 95 GGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQF--NTNQLFVSS--IRGATTLRDFSGSVIQVFA--KTDS----WDY 164 (383)
T ss_dssp TSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETT--EEEEEEEEE--TTTEEEEEETTSCEEEEEE--CCCC----SSC
T ss_pred CCeEEEEeCCCcccceeeecCCcCCceeEEEeCCC--CCCEEEEEe--CCCEEEEEECCCCceEEEe--ccCC----CCC
Confidence 56788999988876544322 11122233444321 223444443 3457889999876555443 1111 000
Q ss_pred CcccEE--ECCEEEEeeeCCcEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCe-EEEEEeeecCCccc
Q 017381 199 HQEGVF--YKGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNK-LYLIGGVGRNGIST 275 (372)
Q Consensus 199 ~~~~v~--~~G~~y~~~~~~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~-L~vv~~~~~~~~~~ 275 (372)
....+. -+|...+.+.....|..||+..+....+.. ...... .+... -+|+ +++.+.. ..
T Consensus 165 ~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--------h~~~v~--~~~~~--~~~~~~l~s~~~-----d~ 227 (383)
T 3ei3_B 165 WYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKL--------HKAKVT--HAEFN--PRCDWLMATSSV-----DA 227 (383)
T ss_dssp CEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEEEC--------SSSCEE--EEEEC--SSCTTEEEEEET-----TS
T ss_pred CeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEecc--------CCCcEE--EEEEC--CCCCCEEEEEeC-----CC
Confidence 111222 146655566666689999986544443321 111111 12111 3565 6665541 35
Q ss_pred eEEEEEEcCCCC-EEEEEecChHHHHHhhhhccCCCceEEEE--ee-CCEEEEEeecCCeEEEEECCCCc
Q 017381 276 TMKLWELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCF--WH-QGMICVCCYTWPEILYYNVARRT 341 (372)
Q Consensus 276 ~i~vw~l~~~~~-W~~v~~lp~~~~~~~~~~~~~~~~~~~~~--~~-~~~i~~~~~~~~~v~~yd~~~~~ 341 (372)
.+.+|.+..... -..+..+.. ...+.++ .. ++..++.....+.|.+||+++.+
T Consensus 228 ~i~iwd~~~~~~~~~~~~~~~~-------------~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~ 284 (383)
T 3ei3_B 228 TVKLWDLRNIKDKNSYIAEMPH-------------EKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWS 284 (383)
T ss_dssp EEEEEEGGGCCSTTCEEEEEEC-------------SSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTT
T ss_pred EEEEEeCCCCCcccceEEEecC-------------CCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCc
Confidence 799998864321 122222210 0122222 22 34444555456789999998754
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=88.24 E-value=12 Score=32.28 Aligned_cols=141 Identities=13% Similarity=0.072 Sum_probs=62.8
Q ss_pred ceEEEEECCCCCccccccCCCCccccccCCCcccEEE--CCEEEEeeeCCcEEEEEecCCCeeeccCCCCccccccCCCc
Q 017381 169 NYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFY--KGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHE 246 (372)
Q Consensus 169 ~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~--~G~~y~~~~~~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~ 246 (372)
..+.+||..++.-...- .. ....-..+.+ +|.+.+.++....|..||+.+.+-.... . ....
T Consensus 195 ~~i~i~d~~~~~~~~~~----~~----h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~-~-------~~~~ 258 (340)
T 4aow_A 195 KLVKVWNLANCKLKTNH----IG----HTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL-D-------GGDI 258 (340)
T ss_dssp SCEEEEETTTTEEEEEE----CC----CSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEE-E-------CSSC
T ss_pred CEEEEEECCCCceeeEe----cC----CCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeee-c-------CCce
Confidence 46788888776432221 00 0011112333 4666666666667999998876443211 1 1111
Q ss_pred ccccceeeeccCCCeEEEEEeeecCCccceEEEEEEcCCCCEEEEEecChHHHHHhhhhccCCCceEEEE--eeCCEEEE
Q 017381 247 LTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCF--WHQGMICV 324 (372)
Q Consensus 247 ~~~~~lv~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~ 324 (372)
. ..+... -++.+...+. ...+.+|.++.... +..+..+....... .....+.++ ..++..++
T Consensus 259 v--~~~~~~--~~~~~~~~~~------d~~i~iwd~~~~~~---~~~~~~~~~~~~~~---~h~~~v~~l~~s~dg~~l~ 322 (340)
T 4aow_A 259 I--NALCFS--PNRYWLCAAT------GPSIKIWDLEGKII---VDELKQEVISTSSK---AEPPQCTSLAWSADGQTLF 322 (340)
T ss_dssp E--EEEEEC--SSSSEEEEEE------TTEEEEEETTTTEE---EEEECCC----------CCCCCEEEEEECTTSSEEE
T ss_pred E--EeeecC--CCCceeeccC------CCEEEEEECCCCeE---EEeccccceeeecc---CCCCCEEEEEECCCCCEEE
Confidence 1 112211 2444443322 25788997643221 11121111000000 011223333 33444555
Q ss_pred EeecCCeEEEEECCCCc
Q 017381 325 CCYTWPEILYYNVARRT 341 (372)
Q Consensus 325 ~~~~~~~v~~yd~~~~~ 341 (372)
.+...+.|.+||+++++
T Consensus 323 sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 323 AGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEETTSCEEEEEEEC--
T ss_pred EEeCCCEEEEEeCCCcC
Confidence 55556789999999875
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=88.17 E-value=15 Score=33.47 Aligned_cols=214 Identities=7% Similarity=-0.039 Sum_probs=105.2
Q ss_pred EecCcEEEEecCCCceEEEEeccccceeccCCCCCCCCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCC-ccccc
Q 017381 107 SSSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQS-WSKFD 185 (372)
Q Consensus 107 ~s~~Gll~~~~~~~~~~~v~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~-W~~~~ 185 (372)
...+|-|++.......+.++|+.+++...+...... ..++++..++ .+++.... ....+.+++..++. .+...
T Consensus 138 ~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~---~~ia~~~~g~--~l~~~d~~-~~~~I~~~d~~~~~~~~~~g 211 (409)
T 3hrp_A 138 AVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG---GKPAVTKDKQ--RVYSIGWE-GTHTVYVYMKASGWAPTRIG 211 (409)
T ss_dssp ECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB---CBCEECTTSS--EEEEEBSS-TTCEEEEEEGGGTTCEEEEE
T ss_pred EeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC---CceeEecCCC--cEEEEecC-CCceEEEEEcCCCceeEEee
Confidence 345676666655557899999999887665433111 1145544332 44544321 22278888876542 12221
Q ss_pred cCCCCccccccCCCcccEEE---CCEEEEeeeCCcEEEEEecCCCeeeccCCCCccccccCCCcccc-c-ceeeeccC-C
Q 017381 186 IDGFPSMILSQSSHQEGVFY---KGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTF-F-RLVNDGEE-S 259 (372)
Q Consensus 186 ~~~~p~~~~~~~~~~~~v~~---~G~~y~~~~~~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~-~-~lv~e~~~-~ 259 (372)
..+.... ....++.+ +|.+|+ +.....|..||+.+.....+..... ....... . .+... - +
T Consensus 212 --~~~~~~~---~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~~~~~~~~-----~g~~~~~P~~~ia~~--p~~ 278 (409)
T 3hrp_A 212 --QLGSTFS---GKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVTLIKQLEL-----SGSLGTNPGPYLIYY--FVD 278 (409)
T ss_dssp --ECCTTSC---SCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEEEEEECCC-----CSCCCCSSCCEEEEE--TTT
T ss_pred --eccchhc---CCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEEEEecccc-----cCCCCCCccccEEEe--CCC
Confidence 0110000 11123333 589998 4444579999998765444310000 1111111 1 34322 3 6
Q ss_pred CeEEEEEeeecCCccceEEEEEEcCCCCEEEEEecC-hHHHHHhhhh--ccCCCceEEEEeeCCEEEEEee-cCCeEEEE
Q 017381 260 NKLYLIGGVGRNGISTTMKLWELGCGGNWIEVERVP-EMMCRKFMSV--CYHNYDHVYCFWHQGMICVCCY-TWPEILYY 335 (372)
Q Consensus 260 g~L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~lp-~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~-~~~~v~~y 335 (372)
|.||+.... .. .|++++.++.-..+..-+ ..-..+-... .+ ....-.++..++.+|+... ..+.|..+
T Consensus 279 g~lyv~d~~-----~~--~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~-~~P~gia~d~dG~lyvad~~~~~~I~~~ 350 (409)
T 3hrp_A 279 SNFYMSDQN-----LS--SVYKITPDGECEWFCGSATQKTVQDGLREEALF-AQPNGMTVDEDGNFYIVDGFKGYCLRKL 350 (409)
T ss_dssp TEEEEEETT-----TT--EEEEECTTCCEEEEEECTTCCSCBCEEGGGCBC-SSEEEEEECTTCCEEEEETTTTCEEEEE
T ss_pred CEEEEEeCC-----CC--EEEEEecCCCEEEEEeCCCCCCcCCCcccccEe-CCCeEEEEeCCCCEEEEeCCCCCEEEEE
Confidence 889988641 22 455556555532221111 0000000000 00 0111223344556999987 77889999
Q ss_pred ECCCCceEECCC
Q 017381 336 NVARRTWHWLPS 347 (372)
Q Consensus 336 d~~~~~w~~v~~ 347 (372)
|+.+++...+..
T Consensus 351 ~~~~G~v~~~~g 362 (409)
T 3hrp_A 351 DILDGYVSTVAG 362 (409)
T ss_dssp ETTTTEEEEEEE
T ss_pred ECCCCEEEEEeC
Confidence 988888776543
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=88.09 E-value=10 Score=31.52 Aligned_cols=195 Identities=11% Similarity=0.042 Sum_probs=94.5
Q ss_pred EecCcEEEE-ecCCCceEEEEeccccceeccCCCCCCCCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCCccccc
Q 017381 107 SSSKGLLCF-SLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFD 185 (372)
Q Consensus 107 ~s~~Gll~~-~~~~~~~~~v~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~~~ 185 (372)
...+|-+++ .....+.+.++|+.++....++.... .....++++..+ ++++... ...+.+|+..++.-....
T Consensus 31 ~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~p~~i~~~~~g---~l~v~~~---~~~i~~~d~~~~~~~~~~ 103 (270)
T 1rwi_B 31 VDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGL-YQPQGLAVDGAG---TVYVTDF---NNRVVTLAAGSNNQTVLP 103 (270)
T ss_dssp ECTTCCEEEEECSSSCEEEEECC-----EECCCCSC-CSCCCEEECTTC---CEEEEET---TTEEEEECTTCSCCEECC
T ss_pred ECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCc-CCcceeEECCCC---CEEEEcC---CCEEEEEeCCCceEeeee
Confidence 344565555 43345788899988777555442211 112345554332 3554432 457888988765433322
Q ss_pred cCCCCccccccCCCcccEEE--CCEEEEeeeCCcEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeEE
Q 017381 186 IDGFPSMILSQSSHQEGVFY--KGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLY 263 (372)
Q Consensus 186 ~~~~p~~~~~~~~~~~~v~~--~G~~y~~~~~~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~ 263 (372)
... . ....++.+ +|.+|+.......|..||..+......... .......+... -+|+||
T Consensus 104 ---~~~--~---~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~---------~~~~p~~i~~~--~~g~l~ 164 (270)
T 1rwi_B 104 ---FDG--L---NYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFT---------GLNDPDGVAVD--NSGNVY 164 (270)
T ss_dssp ---CCS--C---SSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCC---------SCCSCCCEEEC--TTCCEE
T ss_pred ---cCC--c---CCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccc---------cCCCceeEEEe--CCCCEE
Confidence 010 0 11123444 578887765555788888765443321101 10011233322 478888
Q ss_pred EEEeeecCCccceEEEEEEcCCCCEEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeecCCeEEEEECCCCceE
Q 017381 264 LIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRTWH 343 (372)
Q Consensus 264 vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~yd~~~~~w~ 343 (372)
+.... ...+.+| +..+.-....... . + ....-.++..++.+|+.....+.|..||+.++.-.
T Consensus 165 v~~~~-----~~~i~~~--~~~~~~~~~~~~~-~----~------~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~ 226 (270)
T 1rwi_B 165 VTDTD-----NNRVVKL--EAESNNQVVLPFT-D----I------TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTST 226 (270)
T ss_dssp EEEGG-----GTEEEEE--CTTTCCEEECCCS-S----C------CSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCE
T ss_pred EEECC-----CCEEEEE--ecCCCceEeeccc-C----C------CCceEEEECCCCCEEEEECCCCcEEEEcCCCCcce
Confidence 87641 2345555 4443311111100 0 0 00111233345578888766678999999887655
Q ss_pred EC
Q 017381 344 WL 345 (372)
Q Consensus 344 ~v 345 (372)
..
T Consensus 227 ~~ 228 (270)
T 1rwi_B 227 VL 228 (270)
T ss_dssp EC
T ss_pred ee
Confidence 43
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=88.07 E-value=13 Score=32.52 Aligned_cols=99 Identities=6% Similarity=-0.036 Sum_probs=51.0
Q ss_pred CCceEEEEeccccceeccCCCC-CCCCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCCccccccCCCCccccccC
Q 017381 119 SSSSFLVCNLVTLSSRTIDFPT-YPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQS 197 (372)
Q Consensus 119 ~~~~~~v~NP~t~~~~~lP~~~-~~~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~ 197 (372)
.++.+.+||..++++..+..+. .......+.+.+.+ +.++.++ ....+.+||..++.+.... .... ..
T Consensus 28 ~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---~~l~~~~--~dg~i~vwd~~~~~~~~~~--~~~~----~~ 96 (372)
T 1k8k_C 28 NNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS---NRIVTCG--TDRNAYVWTLKGRTWKPTL--VILR----IN 96 (372)
T ss_dssp SSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTT---TEEEEEE--TTSCEEEEEEETTEEEEEE--ECCC----CS
T ss_pred CCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCC---CEEEEEc--CCCeEEEEECCCCeeeeeE--Eeec----CC
Confidence 3578999999988644333221 11122344454422 2333333 2357889998888765443 1111 00
Q ss_pred CCcccEEE--CCEEEEeeeCCcEEEEEecCCCe
Q 017381 198 SHQEGVFY--KGSLYFTTPEPFSIVRFDLENGI 228 (372)
Q Consensus 198 ~~~~~v~~--~G~~y~~~~~~~~i~~yD~~~~~ 228 (372)
.....+.+ +|...+.+.....+..||+.+.+
T Consensus 97 ~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~ 129 (372)
T 1k8k_C 97 RAARCVRWAPNEKKFAVGSGSRVISICYFEQEN 129 (372)
T ss_dssp SCEEEEEECTTSSEEEEEETTSSEEEEEEETTT
T ss_pred CceeEEEECCCCCEEEEEeCCCEEEEEEecCCC
Confidence 11112222 46555556555568888876543
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=87.69 E-value=16 Score=33.22 Aligned_cols=186 Identities=12% Similarity=0.071 Sum_probs=95.5
Q ss_pred ceEEEEeccccceeccCCCCCCCCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCCccccccCCCCccccccCCCc
Q 017381 121 SSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQ 200 (372)
Q Consensus 121 ~~~~v~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~ 200 (372)
..+++||..+++...+...+. ....+.+.+. .-+++..........+++||..++..+.+. ..+. ..
T Consensus 203 ~~i~~~d~~tg~~~~l~~~~~--~~~~~~~spd--g~~la~~~~~~g~~~i~~~d~~~~~~~~l~--~~~~-------~~ 269 (415)
T 2hqs_A 203 SALVIQTLANGAVRQVASFPR--HNGAPAFSPD--GSKLAFALSKTGSLNLYVMDLASGQIRQVT--DGRS-------NN 269 (415)
T ss_dssp CEEEEEETTTCCEEEEECCSS--CEEEEEECTT--SSEEEEEECTTSSCEEEEEETTTCCEEECC--CCSS-------CE
T ss_pred cEEEEEECCCCcEEEeecCCC--cccCEEEcCC--CCEEEEEEecCCCceEEEEECCCCCEEeCc--CCCC-------cc
Confidence 489999999998776653321 1223344333 224554544444567999999888765554 2111 11
Q ss_pred ccEEE--CCE-EEEeeeC--CcEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeEEEEEeeecCCccc
Q 017381 201 EGVFY--KGS-LYFTTPE--PFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGIST 275 (372)
Q Consensus 201 ~~v~~--~G~-~y~~~~~--~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~~~~~ 275 (372)
..+.. +|. +++.... ...|..+|+.+.+...+. ..........+ . -+|+..++.... ....
T Consensus 270 ~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~---------~~~~~~~~~~~-s--pdG~~l~~~~~~--~g~~ 335 (415)
T 2hqs_A 270 TEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRIT---------WEGSQNQDADV-S--SDGKFMVMVSSN--GGQQ 335 (415)
T ss_dssp EEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECC---------CSSSEEEEEEE-C--TTSSEEEEEEEC--SSCE
T ss_pred cceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEe---------cCCCcccCeEE-C--CCCCEEEEEECc--CCce
Confidence 12222 564 4444432 236888898876644432 11111111122 2 577755554421 1124
Q ss_pred eEEEEEEcCCCCEEEEEecChHHHHHhhhhccCCCceEEEEe-eCCEEEEEeecCC--eEEEEECCCCceEECCCC
Q 017381 276 TMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFW-HQGMICVCCYTWP--EILYYNVARRTWHWLPSC 348 (372)
Q Consensus 276 ~i~vw~l~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~--~v~~yd~~~~~w~~v~~~ 348 (372)
.+.+|.++ .+....+..-. . .....+. ++..|++.....+ .|..+|+.++..+.++..
T Consensus 336 ~i~~~d~~-~~~~~~l~~~~--------~------~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~~ 396 (415)
T 2hqs_A 336 HIAKQDLA-TGGVQVLSSTF--------L------DETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPAT 396 (415)
T ss_dssp EEEEEETT-TCCEEECCCSS--------S------CEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCS
T ss_pred EEEEEECC-CCCEEEecCCC--------C------cCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEeeCC
Confidence 56666653 23343221110 0 1122333 4455666554433 699999998888887654
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=87.36 E-value=16 Score=36.15 Aligned_cols=197 Identities=13% Similarity=-0.002 Sum_probs=94.8
Q ss_pred EecCcEEEEecCCCceEEEEeccc----cceeccCCCCCCCCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCCcc
Q 017381 107 SSSKGLLCFSLPSSSSFLVCNLVT----LSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWS 182 (372)
Q Consensus 107 ~s~~Gll~~~~~~~~~~~v~NP~t----~~~~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~ 182 (372)
...+|.|++.....+.+.++++.+ .....+-.... ....+++++...+ +|++... ....+.+++..+..=+
T Consensus 414 d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~-~~P~glavD~~~g--~LY~tD~--~~~~I~v~d~dg~~~~ 488 (699)
T 1n7d_A 414 EVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI-QAPDGLAVDWIHS--NIYWTDS--VLGTVSVADTKGVKRK 488 (699)
T ss_dssp ETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC---CCCEECCCSSS--BCEECCT--TTSCEEEEBSSSCCEE
T ss_pred ccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCC-CCcceEEEEeeCC--cEEEEec--cCCeEEEEecCCCceE
Confidence 445677777665556788888875 12111111000 0112444442222 4555421 2346788887654322
Q ss_pred ccccCCCCccccccCCCcccEEE---CCEEEEeeeCC-cEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccC
Q 017381 183 KFDIDGFPSMILSQSSHQEGVFY---KGSLYFTTPEP-FSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEE 258 (372)
Q Consensus 183 ~~~~~~~p~~~~~~~~~~~~v~~---~G~~y~~~~~~-~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~ 258 (372)
.+. .. .+ ....++++ +|.+||..... ..|..+++....-..+...+ ...|.+ |+.. ..
T Consensus 489 ~l~--~~---~~---~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~----l~~PnG-----lavd-~~ 550 (699)
T 1n7d_A 489 TLF--RE---QG---SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN----IQWPNG-----ITLD-LL 550 (699)
T ss_dssp EEC--CC---SS---CCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSS----CSSCCC-----EEEC-TT
T ss_pred EEE--eC---CC---CCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCC----CCCccE-----EEEe-cc
Confidence 221 10 01 11235555 58999987543 46888887643222211000 002333 3321 13
Q ss_pred CCeEEEEEeeecCCccceEEEEEEcCCCC-EEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeecCCeEEEEEC
Q 017381 259 SNKLYLIGGVGRNGISTTMKLWELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNV 337 (372)
Q Consensus 259 ~g~L~vv~~~~~~~~~~~i~vw~l~~~~~-W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~yd~ 337 (372)
+++||++... ...|.++.+ ++. -..+...+.. +. ........++.||+.....+.|..+|.
T Consensus 551 ~~~LY~aD~~-----~~~I~~~d~--dG~~~~~~~~~~~~-----~~------~P~glavd~~~lywtd~~~~~V~~~d~ 612 (699)
T 1n7d_A 551 SGRLYWVDSK-----LHSISSIDV--NGGNRKTILEDEKR-----LA------HPFSLAVFEDKVFWTDIINEAIFSANR 612 (699)
T ss_dssp TCCEEEEETT-----TTEEEEECS--SSSCCEEECCCSSS-----CS------SCCCCEEETTEEEEECSTTTCEEEEET
T ss_pred CCEEEEEecC-----CCeEEEEcc--CCCceEEEEecCCc-----CC------CceEeEEECCEEEEEeCCCCeEEEEEc
Confidence 5889998742 345555544 333 2222221100 00 111122245688988876778999999
Q ss_pred CCCceEE
Q 017381 338 ARRTWHW 344 (372)
Q Consensus 338 ~~~~w~~ 344 (372)
.+++-..
T Consensus 613 ~~G~~~~ 619 (699)
T 1n7d_A 613 LTGSDVN 619 (699)
T ss_dssp TTEEEEE
T ss_pred cCCCceE
Confidence 8776544
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=87.08 E-value=17 Score=32.77 Aligned_cols=106 Identities=13% Similarity=-0.010 Sum_probs=54.8
Q ss_pred EEEEecCCCceEEEEeccccceeccCCCCCCCCceeEEEEeCCCCEEEEEEeecC-----CCceEEEEECCCCCcccccc
Q 017381 112 LLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKS-----FPNYAFVYDSTDQSWSKFDI 186 (372)
Q Consensus 112 ll~~~~~~~~~~~v~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~-----~~~~~~vy~s~~~~W~~~~~ 186 (372)
.+++....++.+.+||+.+++....-+.. .....+.+.+.+ . .++...... ....+.+||..+++-....
T Consensus 225 ~l~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~g-~-~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~- 299 (433)
T 3bws_A 225 LVYCSNWISEDISVIDRKTKLEIRKTDKI--GLPRGLLLSKDG-K-ELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI- 299 (433)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEECCCC--SEEEEEEECTTS-S-EEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-
T ss_pred EEEEEecCCCcEEEEECCCCcEEEEecCC--CCceEEEEcCCC-C-EEEEEECCCCccccCCCeEEEEECCCCcEEeec-
Confidence 45444434578999999888754332221 112233333322 2 344333221 2358899999876432221
Q ss_pred CCCCccccccCCCcccEEE--CC-EEEEeeeCCcEEEEEecCCCeee
Q 017381 187 DGFPSMILSQSSHQEGVFY--KG-SLYFTTPEPFSIVRFDLENGIWE 230 (372)
Q Consensus 187 ~~~p~~~~~~~~~~~~v~~--~G-~~y~~~~~~~~i~~yD~~~~~w~ 230 (372)
..+ .....+.+ +| .+|+.+.....+..||+.+.+..
T Consensus 300 -~~~-------~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~ 338 (433)
T 3bws_A 300 -GPP-------GNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQ 338 (433)
T ss_dssp -EEE-------ECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEE
T ss_pred -cCC-------CCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEE
Confidence 000 01112233 35 56766666668999999876543
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=86.94 E-value=17 Score=32.62 Aligned_cols=135 Identities=10% Similarity=0.051 Sum_probs=70.9
Q ss_pred CceEEEEeccccceeccCCCCCCCCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCCccccccCCCCccccccCCC
Q 017381 120 SSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSH 199 (372)
Q Consensus 120 ~~~~~v~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~ 199 (372)
++.+.+||..+++...+-..........+++.+.+ +.++++. ....+.+||..++.-...- .. ....
T Consensus 112 d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~---~~l~~~~--~dg~i~iwd~~~~~~~~~~----~~----~~~~ 178 (401)
T 4aez_A 112 ERNVYVWNADSGSVSALAETDESTYVASVKWSHDG---SFLSVGL--GNGLVDIYDVESQTKLRTM----AG----HQAR 178 (401)
T ss_dssp TTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTS---SEEEEEE--TTSCEEEEETTTCCEEEEE----CC----CSSC
T ss_pred CCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCC---CEEEEEC--CCCeEEEEECcCCeEEEEe----cC----CCCc
Confidence 57899999999987655433222222344443322 2344443 2357889998876432211 11 1112
Q ss_pred cccEEECCEEEEeeeCCcEEEEEecCCCee--eccCCCCccccccCCCcccccceeeeccCCCeEEEEEeeecCCccceE
Q 017381 200 QEGVFYKGSLYFTTPEPFSIVRFDLENGIW--ETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTM 277 (372)
Q Consensus 200 ~~~v~~~G~~y~~~~~~~~i~~yD~~~~~w--~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~~~~~~i 277 (372)
...+..++...+.++....|..+|+.+..- ..+. . ..... ..+... -+|++++++.. ...+
T Consensus 179 v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~-------~~~~v--~~~~~~--~~~~~l~s~~~-----d~~v 241 (401)
T 4aez_A 179 VGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQ-G-------HSSEV--CGLAWR--SDGLQLASGGN-----DNVV 241 (401)
T ss_dssp EEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEE-C-------CSSCE--EEEEEC--TTSSEEEEEET-----TSCE
T ss_pred eEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEc-C-------CCCCe--eEEEEc--CCCCEEEEEeC-----CCeE
Confidence 224445777666676667899999874321 1111 0 11111 122211 36777776652 3578
Q ss_pred EEEEEcC
Q 017381 278 KLWELGC 284 (372)
Q Consensus 278 ~vw~l~~ 284 (372)
.+|.+..
T Consensus 242 ~iwd~~~ 248 (401)
T 4aez_A 242 QIWDARS 248 (401)
T ss_dssp EEEETTC
T ss_pred EEccCCC
Confidence 9998753
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.83 E-value=16 Score=32.29 Aligned_cols=25 Identities=12% Similarity=0.060 Sum_probs=16.6
Q ss_pred CCEEEEEeecCCeEEEEECCCCceE
Q 017381 319 QGMICVCCYTWPEILYYNVARRTWH 343 (372)
Q Consensus 319 ~~~i~~~~~~~~~v~~yd~~~~~w~ 343 (372)
++..++.+...+.+.+||+.+++-.
T Consensus 256 ~~~~l~~~~~dg~i~vwd~~~~~~~ 280 (408)
T 4a11_B 256 DGLHLLTVGTDNRMRLWNSSNGENT 280 (408)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCBC
T ss_pred CCCEEEEecCCCeEEEEECCCCccc
Confidence 3444444545678999999987643
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=86.72 E-value=15 Score=31.87 Aligned_cols=66 Identities=12% Similarity=-0.019 Sum_probs=32.7
Q ss_pred CcEEEEecCCCceEEEEeccccceeccC-CCC-CCCCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCC
Q 017381 110 KGLLCFSLPSSSSFLVCNLVTLSSRTID-FPT-YPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQS 180 (372)
Q Consensus 110 ~Gll~~~~~~~~~~~v~NP~t~~~~~lP-~~~-~~~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~ 180 (372)
+|-+++.+..++.+.+||..+++....- ... .......+.+.+. .-.++ .++ ....+.+||..++.
T Consensus 127 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~-~~~--~dg~i~i~d~~~~~ 194 (366)
T 3k26_A 127 DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL--GEKIM-SCG--MDHSLKLWRINSKR 194 (366)
T ss_dssp CTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTT--SSEEE-EEE--TTSCEEEEESCSHH
T ss_pred CCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCC--CCEEE-Eec--CCCCEEEEECCCCc
Confidence 4433333334578999999887754332 111 1111223334332 22333 333 23578899988654
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=86.67 E-value=22 Score=33.79 Aligned_cols=211 Identities=10% Similarity=0.030 Sum_probs=96.3
Q ss_pred cEEEEecCCCceEEEEeccccceeccCCCCCCCCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCCccccccCCCC
Q 017381 111 GLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFP 190 (372)
Q Consensus 111 Gll~~~~~~~~~~~v~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p 190 (372)
+.+++.....+.+.++|..+.+...+...+.......+++++.+ .| +++... ....+.++|..+++=... ++
T Consensus 292 ~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg-~~-l~va~~--~~~~v~v~D~~tg~l~~~----i~ 363 (543)
T 1nir_A 292 PEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSH-RY-FMTAAN--NSNKVAVIDSKDRRLSAL----VD 363 (543)
T ss_dssp SEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTS-CE-EEEEEG--GGTEEEEEETTTTEEEEE----EE
T ss_pred CEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCC-CE-EEEEec--CCCeEEEEECCCCeEEEe----ec
Confidence 34444444467899999877653221111111122345565433 23 333322 235788899998753221 11
Q ss_pred ccccccCCCcccEEE--C-CEEEEeee-CCcEEEEEecCCC-----eeeccCC-CCccccccCCCcccccceeeeccCCC
Q 017381 191 SMILSQSSHQEGVFY--K-GSLYFTTP-EPFSIVRFDLENG-----IWETPND-ANDHMTMMLPHELTFFRLVNDGEESN 260 (372)
Q Consensus 191 ~~~~~~~~~~~~v~~--~-G~~y~~~~-~~~~i~~yD~~~~-----~w~~i~~-p~~~~~~~~p~~~~~~~lv~e~~~~g 260 (372)
.+..++.. ....+. + |.+|..+. ....|..+|+.++ .|+.+.. + .+... ...+..- -+|
T Consensus 364 ~g~~ph~g-~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~-------~~g~~-~~~v~~~--pdg 432 (543)
T 1nir_A 364 VGKTPHPG-RGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQ-------GQGGG-SLFIKTH--PKS 432 (543)
T ss_dssp CSSSBCCT-TCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEE-------CSCSC-CCCEECC--TTC
T ss_pred cCCCCCCC-CCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEE-------cCCCC-ceEEEcC--CCC
Confidence 10111100 111222 3 56665543 3467999998773 2554320 1 11111 0112111 356
Q ss_pred eEEEEEeeecCC--ccceEEEEEEcCCCCEEEEEecChHHHHHhhhhccCCCce-EEEE-eeCCEEEEEee----cCCeE
Q 017381 261 KLYLIGGVGRNG--ISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDH-VYCF-WHQGMICVCCY----TWPEI 332 (372)
Q Consensus 261 ~L~vv~~~~~~~--~~~~i~vw~l~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~-~~~~-~~~~~i~~~~~----~~~~v 332 (372)
+...++...... ...+|.||..+....= ...||..-...... ..... -..+ -+|+.+++... ..+.|
T Consensus 433 ~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~--~~~~~v~~~~~~~~---~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i 507 (543)
T 1nir_A 433 SHLYVDTTFNPDARISQSVAVFDLKNLDAK--YQVLPIAEWADLGE---GAKRVVQPEYNKRGDEVWFSVWNGKNDSSAL 507 (543)
T ss_dssp CEEEECCTTCSSHHHHTCEEEEETTCTTSC--CEEECHHHHHCCCS---SCCEEEEEEECSSSSEEEEEEECCTTSCCEE
T ss_pred CcEEEecCCCCCcccCceEEEEECCCCCCC--eEEeechhhcccCC---CCCceEeccCCCCCCEEEEEeecCCCCCCeE
Confidence 544443211000 2468999987643321 12333221111100 00111 1122 35677887743 24679
Q ss_pred EEEECCCCceEEC
Q 017381 333 LYYNVARRTWHWL 345 (372)
Q Consensus 333 ~~yd~~~~~w~~v 345 (372)
.+||.+|.+..+.
T Consensus 508 ~v~D~~t~~~~~~ 520 (543)
T 1nir_A 508 VVVDDKTLKLKAV 520 (543)
T ss_dssp EEEETTTTEEEEE
T ss_pred EEEECCCceEEEe
Confidence 9999999987664
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=86.23 E-value=18 Score=32.15 Aligned_cols=192 Identities=9% Similarity=0.070 Sum_probs=92.2
Q ss_pred cCcEEEEecCCCceEEEEeccccceeccCCCCCC-------CCc--eeEEEEeCCCCEEEEEEeecCCCceEEEEECCCC
Q 017381 109 SKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYP-------FDF--ELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQ 179 (372)
Q Consensus 109 ~~Gll~~~~~~~~~~~v~NP~t~~~~~lP~~~~~-------~~~--~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~ 179 (372)
.+|.+++... .+.++.+|+.|++...--..+.. ... .....+. . +|++.. ....+..+|.+++
T Consensus 52 ~~~~v~~~~~-~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~v~v~~---~~g~l~a~d~~tG 123 (376)
T 3q7m_A 52 ADNVVYAADR-AGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSG---G-HVYIGS---EKAQVYALNTSDG 123 (376)
T ss_dssp ETTEEEEECT-TSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEET---T-EEEEEE---TTSEEEEEETTTC
T ss_pred ECCEEEEEcC-CCeEEEEEccCCceeeeecCccccccccccCcccccCceEeC---C-EEEEEc---CCCEEEEEECCCC
Confidence 4666665542 46888999998884322111110 011 1112211 1 455433 2357889998877
Q ss_pred C--ccccccCCCCccccccCCCcccEEECCEEEEeeeCCcEEEEEecCCC--eeeccCCCCccccccCCCc--c-cccce
Q 017381 180 S--WSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENG--IWETPNDANDHMTMMLPHE--L-TFFRL 252 (372)
Q Consensus 180 ~--W~~~~~~~~p~~~~~~~~~~~~v~~~G~~y~~~~~~~~i~~yD~~~~--~w~~i~~p~~~~~~~~p~~--~-~~~~l 252 (372)
+ |+... . . .....++..+|.+|+.+.+ ..+.+||..+. .|+.-. + .+.. . ....+
T Consensus 124 ~~~W~~~~--~--~-----~~~~~p~~~~~~v~v~~~~-g~l~~~d~~tG~~~W~~~~-~-------~~~~~~~~~~~~~ 185 (376)
T 3q7m_A 124 TVAWQTKV--A--G-----EALSRPVVSDGLVLIHTSN-GQLQALNEADGAVKWTVNL-D-------MPSLSLRGESAPT 185 (376)
T ss_dssp CEEEEEEC--S--S-----CCCSCCEEETTEEEEECTT-SEEEEEETTTCCEEEEEEC-C-------C-----CCCCCCE
T ss_pred CEEEEEeC--C--C-----ceEcCCEEECCEEEEEcCC-CeEEEEECCCCcEEEEEeC-C-------CCceeecCCCCcE
Confidence 5 76543 1 1 1223456778888865543 46999998765 466521 1 1110 0 11222
Q ss_pred eeeccCCCeEEEEEeeecCCccceEEEEEEcCCCC--EEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeecCC
Q 017381 253 VNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGN--WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWP 330 (372)
Q Consensus 253 v~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~~~~~--W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 330 (372)
+ .+|.+++... ...+..+... .++ |+.-...+.... ...... ..... .+..++.||+... .+
T Consensus 186 ~----~~~~v~~g~~------~g~l~~~d~~-tG~~~w~~~~~~~~~~~-~~~~~~--~~~~~-p~~~~~~v~~~~~-~g 249 (376)
T 3q7m_A 186 T----AFGAAVVGGD------NGRVSAVLME-QGQMIWQQRISQATGST-EIDRLS--DVDTT-PVVVNGVVFALAY-NG 249 (376)
T ss_dssp E----ETTEEEECCT------TTEEEEEETT-TCCEEEEEECCC--------------CCCCC-CEEETTEEEEECT-TS
T ss_pred E----ECCEEEEEcC------CCEEEEEECC-CCcEEEEEecccCCCCc-cccccc--ccCCC-cEEECCEEEEEec-Cc
Confidence 2 4666655321 1233333332 233 875433221110 000000 00011 1234777888753 46
Q ss_pred eEEEEECCCCce
Q 017381 331 EILYYNVARRTW 342 (372)
Q Consensus 331 ~v~~yd~~~~~w 342 (372)
.+.++|+++++-
T Consensus 250 ~l~~~d~~tG~~ 261 (376)
T 3q7m_A 250 NLTALDLRSGQI 261 (376)
T ss_dssp CEEEEETTTCCE
T ss_pred EEEEEECCCCcE
Confidence 799999998843
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=86.13 E-value=29 Score=34.56 Aligned_cols=199 Identities=11% Similarity=0.082 Sum_probs=102.7
Q ss_pred cCcEEEEecCCCceEEEEeccccceeccCCCCCCCCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCCccccccCC
Q 017381 109 SKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDG 188 (372)
Q Consensus 109 ~~Gll~~~~~~~~~~~v~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~~~~~~ 188 (372)
.+|-|.+.. ..+.++.+||.++++..++...... ....++...... ++.+ +.. ..+.+|+..++.|+... .
T Consensus 416 ~~g~lWigt-~~~Gl~~~~~~~~~~~~~~~~~~~~-~~v~~i~~d~~g-~lwi-gt~---~Gl~~~~~~~~~~~~~~--~ 486 (781)
T 3v9f_A 416 SEGNLWFGT-YLGNISYYNTRLKKFQIIELEKNEL-LDVRVFYEDKNK-KIWI-GTH---AGVFVIDLASKKVIHHY--D 486 (781)
T ss_dssp TTSCEEEEE-TTEEEEEECSSSCEEEECCSTTTCC-CCEEEEEECTTS-EEEE-EET---TEEEEEESSSSSCCEEE--C
T ss_pred CCCCEEEEe-ccCCEEEEcCCCCcEEEeccCCCCC-CeEEEEEECCCC-CEEE-EEC---CceEEEeCCCCeEEecc--c
Confidence 355444432 2357889999999888776431111 111222222222 3333 221 46889999999887665 2
Q ss_pred CCccccccCCCcccEEE--CCEEEEeeeCCcEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeEEEEE
Q 017381 189 FPSMILSQSSHQEGVFY--KGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIG 266 (372)
Q Consensus 189 ~p~~~~~~~~~~~~v~~--~G~~y~~~~~~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~ 266 (372)
.+...... .....++. +|.+ |++.....+..||+.++++..+..+.. +|.... ..+..+ .+|.|++..
T Consensus 487 ~~~~~~~~-~~i~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~-----l~~~~i-~~i~~d--~~g~lWi~T 556 (781)
T 3v9f_A 487 TSNSQLLE-NFVRSIAQDSEGRF-WIGTFGGGVGIYTPDMQLVRKFNQYEG-----FCSNTI-NQIYRS--SKGQMWLAT 556 (781)
T ss_dssp TTTSSCSC-SCEEEEEECTTCCE-EEEESSSCEEEECTTCCEEEEECTTTT-----CSCSCE-EEEEEC--TTSCEEEEE
T ss_pred Cccccccc-ceeEEEEEcCCCCE-EEEEcCCCEEEEeCCCCeEEEccCCCC-----CCCCee-EEEEEC--CCCCEEEEE
Confidence 22101111 11123333 4565 455443458999999888876542200 333221 233323 578888865
Q ss_pred eeecCCccceEEE-EEEcCCCC-EEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeecCCeEEEEECCCCceEE
Q 017381 267 GVGRNGISTTMKL-WELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRTWHW 344 (372)
Q Consensus 267 ~~~~~~~~~~i~v-w~l~~~~~-W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~yd~~~~~w~~ 344 (372)
. . .+ +.++..+. ++....- .-+... ... ..+...++.|++.. .+.+..||+++++++.
T Consensus 557 ~-------~--Glv~~~d~~~~~~~~~~~~------~gl~~~--~i~-~i~~d~~g~lW~~t--~~Gl~~~~~~~~~~~~ 616 (781)
T 3v9f_A 557 G-------E--GLVCFPSARNFDYQVFQRK------EGLPNT--HIR-AISEDKNGNIWAST--NTGISCYITSKKCFYT 616 (781)
T ss_dssp T-------T--EEEEESCTTTCCCEEECGG------GTCSCC--CCC-EEEECSSSCEEEEC--SSCEEEEETTTTEEEE
T ss_pred C-------C--CceEEECCCCCcEEEcccc------CCCCCc--eEE-EEEECCCCCEEEEc--CCceEEEECCCCceEE
Confidence 3 1 24 66665543 5544321 001000 011 11223456788876 4579999999998877
Q ss_pred CC
Q 017381 345 LP 346 (372)
Q Consensus 345 v~ 346 (372)
..
T Consensus 617 ~~ 618 (781)
T 3v9f_A 617 YD 618 (781)
T ss_dssp EC
T ss_pred ec
Confidence 54
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=84.80 E-value=18 Score=31.16 Aligned_cols=114 Identities=12% Similarity=0.124 Sum_probs=54.9
Q ss_pred ecCcEEEEecCCCceEEEEeccccceeccCCCCC-CCCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCCcccccc
Q 017381 108 SSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTY-PFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDI 186 (372)
Q Consensus 108 s~~Gll~~~~~~~~~~~v~NP~t~~~~~lP~~~~-~~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~~~~ 186 (372)
+.+|-.++.+..++.+.+||..+++...+..+.. ......+++.+.... ++++.++ .+..+.+||..++.|....
T Consensus 22 s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~-~~l~s~s--~D~~v~iWd~~~~~~~~~~- 97 (316)
T 3bg1_A 22 DYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYG-NILASCS--YDRKVIIWREENGTWEKSH- 97 (316)
T ss_dssp CGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGS-SCEEEEE--TTSCEEEECCSSSCCCEEE-
T ss_pred cCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCC-CEEEEEE--CCCEEEEEECCCCcceEEE-
Confidence 3445333333345788999988765332221110 111123333221111 2333333 3357889999988886543
Q ss_pred CCCCccccccCCCcccEEE--C--CEEEEeeeCCcEEEEEecCCC-eee
Q 017381 187 DGFPSMILSQSSHQEGVFY--K--GSLYFTTPEPFSIVRFDLENG-IWE 230 (372)
Q Consensus 187 ~~~p~~~~~~~~~~~~v~~--~--G~~y~~~~~~~~i~~yD~~~~-~w~ 230 (372)
.+.. ....-..+.+ + |.+...+.....|..+|+.+. .|.
T Consensus 98 -~~~~----h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~ 141 (316)
T 3bg1_A 98 -EHAG----HDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWE 141 (316)
T ss_dssp -EECC----CSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEE
T ss_pred -EccC----CCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcc
Confidence 1111 1111223333 2 555555555556888888765 454
|
| >2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=84.43 E-value=0.99 Score=26.78 Aligned_cols=27 Identities=22% Similarity=0.450 Sum_probs=22.0
Q ss_pred CCCCChhhhcCCCHHHHHHHHccCCch
Q 017381 5 RREMDPAIWSRLPEDLLDHVLSFLPPK 31 (372)
Q Consensus 5 ~~~~~~~~~~~LP~dll~~IL~rLp~~ 31 (372)
++-.|++-++.||.|+..+||+.-...
T Consensus 13 P~~VD~eVF~~LP~dIQ~Ells~~~~e 39 (48)
T 2kwv_A 13 PEGVDQEVFKQLPADIQEEILSGKSRE 39 (48)
T ss_dssp CTTCCGGGTTTSCHHHHHHHTTCCCSC
T ss_pred CCCCCHHHHHHCcHHHHHHHHhcchHH
Confidence 345889999999999999999876533
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=84.28 E-value=19 Score=30.79 Aligned_cols=190 Identities=11% Similarity=0.051 Sum_probs=91.5
Q ss_pred ecCc-EEEEecCCCceEEEEeccccceeccCCCCCC-CCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCCccccc
Q 017381 108 SSKG-LLCFSLPSSSSFLVCNLVTLSSRTIDFPTYP-FDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFD 185 (372)
Q Consensus 108 s~~G-ll~~~~~~~~~~~v~NP~t~~~~~lP~~~~~-~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~~~ 185 (372)
+.+| +++... .++.+.+||..+++.......... .....+.+.+. . +.++.++ ....+.+||..+++-...-
T Consensus 106 ~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~--~-~~l~~~~--~dg~v~~~d~~~~~~~~~~ 179 (337)
T 1gxr_A 106 LPDGCTLIVGG-EASTLSIWDLAAPTPRIKAELTSSAPACYALAISPD--S-KVCFSCC--SDGNIAVWDLHNQTLVRQF 179 (337)
T ss_dssp CTTSSEEEEEE-SSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTT--S-SEEEEEE--TTSCEEEEETTTTEEEEEE
T ss_pred cCCCCEEEEEc-CCCcEEEEECCCCCcceeeecccCCCceEEEEECCC--C-CEEEEEe--CCCcEEEEeCCCCceeeee
Confidence 4455 343333 357899999988774333222111 11123333322 2 2333333 2356889998876432211
Q ss_pred cCCCCccccccCCCcccEEE--CCEEEEeeeCCcEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeEE
Q 017381 186 IDGFPSMILSQSSHQEGVFY--KGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLY 263 (372)
Q Consensus 186 ~~~~p~~~~~~~~~~~~v~~--~G~~y~~~~~~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~ 263 (372)
.. .......+.+ +|...+.+.....+..||+.+.+-.... . .+........ . -+|+++
T Consensus 180 ----~~----~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-~-------~~~~v~~~~~--s--~~~~~l 239 (337)
T 1gxr_A 180 ----QG----HTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH-D-------FTSQIFSLGY--C--PTGEWL 239 (337)
T ss_dssp ----CC----CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-E-------CSSCEEEEEE--C--TTSSEE
T ss_pred ----ec----ccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeee-c-------CCCceEEEEE--C--CCCCEE
Confidence 10 0011122333 5666666666667999999876543221 1 2222211122 1 467776
Q ss_pred EEEeeecCCccceEEEEEEcCCCCEEEEEecChHHHHHhhhhccCCCceEEEE--eeCCEEEEEeecCCeEEEEECCCCc
Q 017381 264 LIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCF--WHQGMICVCCYTWPEILYYNVARRT 341 (372)
Q Consensus 264 vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~v~~yd~~~~~ 341 (372)
+++.. ...+.+|.++........ . ....+..+ ..++..++.....+.+.+||+++++
T Consensus 240 ~~~~~-----~~~i~~~~~~~~~~~~~~-~---------------~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~ 298 (337)
T 1gxr_A 240 AVGME-----SSNVEVLHVNKPDKYQLH-L---------------HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA 298 (337)
T ss_dssp EEEET-----TSCEEEEETTSSCEEEEC-C---------------CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred EEEcC-----CCcEEEEECCCCCeEEEc-C---------------CccceeEEEECCCCCEEEEecCCCcEEEEECCCCe
Confidence 66541 356889987543222110 0 00112222 2234444455456789999999886
Q ss_pred eEE
Q 017381 342 WHW 344 (372)
Q Consensus 342 w~~ 344 (372)
-..
T Consensus 299 ~~~ 301 (337)
T 1gxr_A 299 SIF 301 (337)
T ss_dssp EEE
T ss_pred EEE
Confidence 553
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=84.07 E-value=24 Score=31.83 Aligned_cols=191 Identities=12% Similarity=0.036 Sum_probs=99.8
Q ss_pred ecCcEEEEecCCCceEEEEeccccceeccCCCCCCCCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCCccccccC
Q 017381 108 SSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDID 187 (372)
Q Consensus 108 s~~Gll~~~~~~~~~~~v~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~~~~~ 187 (372)
..+|.|++.....+.+..+++.++....+...... ...+++++...+ +|++... ....+++++.....-+.+.
T Consensus 125 ~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~-~p~glavd~~~g--~lY~~d~--~~~~I~~~~~dg~~~~~l~-- 197 (386)
T 3v65_B 125 HRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLE-SPGGLAVDWVHD--KLYWTDS--GTSRIEVANLDGAHRKVLL-- 197 (386)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCS-CCCCEEEETTTT--EEEEEET--TTTEEEECBTTSCSCEEEE--
T ss_pred cCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCC-CccEEEEEeCCC--eEEEEcC--CCCeEEEEeCCCCceEEee--
Confidence 45677777765567899999988765544322111 123566664333 5666543 2347777777544322221
Q ss_pred CCCccccccCCCcccEEE---CCEEEEeeeCC-cEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeEE
Q 017381 188 GFPSMILSQSSHQEGVFY---KGSLYFTTPEP-FSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLY 263 (372)
Q Consensus 188 ~~p~~~~~~~~~~~~v~~---~G~~y~~~~~~-~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~ 263 (372)
. . .+ ..-.++.+ +|.+||..... ..|..+|+....-..+...+ ...|.+ |... ..+++||
T Consensus 198 ~--~-~l---~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~----~~~PnG-----lavd-~~~~~lY 261 (386)
T 3v65_B 198 W--Q-SL---EKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTH----LFWPNG-----LTID-YAGRRMY 261 (386)
T ss_dssp C--S-SC---SCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSS----CSCEEE-----EEEE-GGGTEEE
T ss_pred c--C-CC---CCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECC----CCCeee-----EEEe-CCCCEEE
Confidence 0 0 01 11234444 58999987655 67999998754332221010 002332 3311 1378899
Q ss_pred EEEeeecCCccceEEEEEEcCCCC-EEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeecCCeEEEEECCCCc
Q 017381 264 LIGGVGRNGISTTMKLWELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRT 341 (372)
Q Consensus 264 vv~~~~~~~~~~~i~vw~l~~~~~-W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~yd~~~~~ 341 (372)
++... ...|.++ +.++. -..+..-. + ......+..++.||+.....+.|..+|..+++
T Consensus 262 ~aD~~-----~~~I~~~--d~dG~~~~~~~~~~-------~------~~P~giav~~~~ly~td~~~~~V~~~~~~~G~ 320 (386)
T 3v65_B 262 WVDAK-----HHVIERA--NLDGSHRKAVISQG-------L------PHPFAITVFEDSLYWTDWHTKSINSANKFTGK 320 (386)
T ss_dssp EEETT-----TTEEEEE--CTTSCSCEEEECSS-------C------SSEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred EEECC-----CCEEEEE--eCCCCeeEEEEECC-------C------CCceEEEEECCEEEEeeCCCCeEEEEECCCCc
Confidence 98652 2344444 44443 22221110 0 01122223677899988777789999965553
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=83.98 E-value=25 Score=31.94 Aligned_cols=189 Identities=10% Similarity=0.062 Sum_probs=94.7
Q ss_pred eEEEEecCcEEEEecCCCceEEEEeccccceec-cCCCCCCCCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCCc
Q 017381 103 ATLLSSSKGLLCFSLPSSSSFLVCNLVTLSSRT-IDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSW 181 (372)
Q Consensus 103 ~~~~~s~~Gll~~~~~~~~~~~v~NP~t~~~~~-lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W 181 (372)
...+...+.+++... .++.+.+||..+++... +..- ......+.+.. . . ++.++ ....+.+||..++.-
T Consensus 162 v~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~h--~~~v~~~~~~~---~-~-l~s~s--~dg~i~~wd~~~~~~ 231 (445)
T 2ovr_B 162 VWSSQMRDNIIISGS-TDRTLKVWNAETGECIHTLYGH--TSTVRCMHLHE---K-R-VVSGS--RDATLRVWDIETGQC 231 (445)
T ss_dssp EEEEEEETTEEEEEE-TTSCEEEEETTTTEEEEEECCC--SSCEEEEEEET---T-E-EEEEE--TTSEEEEEESSSCCE
T ss_pred EEEEEecCCEEEEEe-CCCeEEEEECCcCcEEEEECCC--CCcEEEEEecC---C-E-EEEEe--CCCEEEEEECCCCcE
Confidence 333333455544433 46789999998886432 2211 11112333321 2 2 33332 346788999887542
Q ss_pred cccccCCCCccccccCCCcccEEECCEEEEeeeCCcEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCe
Q 017381 182 SKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNK 261 (372)
Q Consensus 182 ~~~~~~~~p~~~~~~~~~~~~v~~~G~~y~~~~~~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~ 261 (372)
...- .. .......+..+|...+.+.....+..||+.+.+..... . . .......+. .+|.
T Consensus 232 ~~~~----~~----~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~-------~-~~~~v~~~~----~~~~ 290 (445)
T 2ovr_B 232 LHVL----MG----HVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTL-Q-------G-HTNRVYSLQ----FDGI 290 (445)
T ss_dssp EEEE----EC----CSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEE-C-------C-CSSCEEEEE----ECSS
T ss_pred EEEE----cC----CcccEEEEEECCCEEEEEcCCCEEEEEECCCCcEeEEe-c-------C-CCCceEEEE----ECCC
Confidence 1111 00 11122345558877777776667999998776543211 0 0 111112222 5677
Q ss_pred EEEEEeeecCCccceEEEEEEcCCCCEEEEEecChHHHHHhhhhccCCCceEEEE-eeCCEEEEEeecCCeEEEEECCCC
Q 017381 262 LYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCF-WHQGMICVCCYTWPEILYYNVARR 340 (372)
Q Consensus 262 L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~v~~yd~~~~ 340 (372)
.++++.. ...+.+|.+..... +..+.. ....+.++ ..++. ++.+...+.|.+||++++
T Consensus 291 ~l~~~~~-----d~~i~i~d~~~~~~---~~~~~~------------~~~~v~~~~~~~~~-l~~~~~dg~i~vwd~~~~ 349 (445)
T 2ovr_B 291 HVVSGSL-----DTSIRVWDVETGNC---IHTLTG------------HQSLTSGMELKDNI-LVSGNADSTVKIWDIKTG 349 (445)
T ss_dssp EEEEEET-----TSCEEEEETTTCCE---EEEECC------------CCSCEEEEEEETTE-EEEEETTSCEEEEETTTC
T ss_pred EEEEEeC-----CCeEEEEECCCCCE---EEEEcC------------CcccEEEEEEeCCE-EEEEeCCCeEEEEECCCC
Confidence 6666542 35789998753222 222210 01122333 34554 444445678999999887
Q ss_pred ceE
Q 017381 341 TWH 343 (372)
Q Consensus 341 ~w~ 343 (372)
+-.
T Consensus 350 ~~~ 352 (445)
T 2ovr_B 350 QCL 352 (445)
T ss_dssp CEE
T ss_pred cEE
Confidence 543
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=83.52 E-value=26 Score=31.88 Aligned_cols=105 Identities=15% Similarity=0.163 Sum_probs=57.2
Q ss_pred CCEEEEeeeCCcEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeEEEEEeeecCCccceEEEEEEcCC
Q 017381 206 KGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCG 285 (372)
Q Consensus 206 ~G~~y~~~~~~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~~~ 285 (372)
+|...+.+.....|..||+.+.+-.... .........+. .+++.++.+.. ...+.+|.+...
T Consensus 321 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~----------~~h~~~v~~~~---~~~~~l~s~s~-----dg~v~vwd~~~~ 382 (464)
T 3v7d_B 321 ERKRCISASMDTTIRIWDLENGELMYTL----------QGHTALVGLLR---LSDKFLVSAAA-----DGSIRGWDANDY 382 (464)
T ss_dssp TTTEEEEEETTSCEEEEETTTTEEEEEE----------CCCSSCEEEEE---ECSSEEEEEET-----TSEEEEEETTTC
T ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEE----------eCCCCcEEEEE---EcCCEEEEEeC-----CCcEEEEECCCC
Confidence 4555555665567999999876543221 11111112232 45666555541 357999988643
Q ss_pred CC-EEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeecCCeEEEEECCCCceEE
Q 017381 286 GN-WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRTWHW 344 (372)
Q Consensus 286 ~~-W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~yd~~~~~w~~ 344 (372)
.. +..... ......++..++.+++.+. .+.|.+||+++++...
T Consensus 383 ~~~~~~~~~---------------~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~ 426 (464)
T 3v7d_B 383 SRKFSYHHT---------------NLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVH 426 (464)
T ss_dssp CEEEEEECT---------------TCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEE
T ss_pred ceeeeecCC---------------CCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEe
Confidence 32 322110 1122334444554555544 5789999999998765
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=82.86 E-value=27 Score=31.60 Aligned_cols=93 Identities=11% Similarity=0.183 Sum_probs=48.7
Q ss_pred ceEEEEECCCCCccccccCCCCccccccCCCcccEEECCEEEEeeeCCcEEEEEecCCCeeeccCCCCccccccCCCccc
Q 017381 169 NYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELT 248 (372)
Q Consensus 169 ~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~~y~~~~~~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~ 248 (372)
..+.+||..++.-...- .. ....-..+..+|.+.+.++....|..+|+.+.+..... . .....
T Consensus 153 g~i~iwd~~~~~~~~~~----~~----h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~-~--------~h~~~ 215 (435)
T 1p22_A 153 NTIKIWDKNTLECKRIL----TG----HTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTL-I--------HHCEA 215 (435)
T ss_dssp SCEEEEESSSCCEEEEE----CC----CSSCEEEEECCSSEEEEEETTSCEEEEESSSCCEEEEE-C--------CCCSC
T ss_pred CeEEEEeCCCCeEEEEE----cC----CCCcEEEEEECCCEEEEEcCCCeEEEEECCCCcEEEEE-c--------CCCCc
Confidence 56788888765422111 11 11112244457877777776667999999876543221 0 11111
Q ss_pred ccceeeeccCCCeEEEEEeeecCCccceEEEEEEcCCCC
Q 017381 249 FFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGN 287 (372)
Q Consensus 249 ~~~lv~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~~~~~ 287 (372)
...+. .++.+++.+. ....+.+|.+.....
T Consensus 216 v~~l~----~~~~~l~s~s-----~dg~i~vwd~~~~~~ 245 (435)
T 1p22_A 216 VLHLR----FNNGMMVTCS-----KDRSIAVWDMASPTD 245 (435)
T ss_dssp EEEEE----CCTTEEEEEE-----TTSCEEEEECSSSSC
T ss_pred EEEEE----EcCCEEEEee-----CCCcEEEEeCCCCCC
Confidence 12222 4555555544 135788998764433
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.48 E-value=23 Score=30.53 Aligned_cols=98 Identities=6% Similarity=-0.090 Sum_probs=48.6
Q ss_pred CCceEEEEeccccc--eeccCCCCC--CCCceeEEEEe-CCCCEEEEEEeecCCCceEEEEECCCCCccccccCCCCccc
Q 017381 119 SSSSFLVCNLVTLS--SRTIDFPTY--PFDFELLTLVS-TPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMI 193 (372)
Q Consensus 119 ~~~~~~v~NP~t~~--~~~lP~~~~--~~~~~~~~~~~-~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~ 193 (372)
.++.+.+||..+++ ...+..... ......+.+.. -..+.+.++.++ ....+.+||..++.=.... ...
T Consensus 137 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~--~~~--- 209 (357)
T 3i2n_A 137 RDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGY--DNGDIKLFDLRNMALRWET--NIK--- 209 (357)
T ss_dssp TTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEE--TTSEEEEEETTTTEEEEEE--ECS---
T ss_pred CCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEc--cCCeEEEEECccCceeeec--CCC---
Confidence 45789999998876 333332221 11222333221 111223444443 2357899998876532111 111
Q ss_pred cccCCCcccEEE-----CCEEEEeeeCCcEEEEEecCCC
Q 017381 194 LSQSSHQEGVFY-----KGSLYFTTPEPFSIVRFDLENG 227 (372)
Q Consensus 194 ~~~~~~~~~v~~-----~G~~y~~~~~~~~i~~yD~~~~ 227 (372)
.....+.+ +|...+.+.....+..||+.+.
T Consensus 210 ----~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 244 (357)
T 3i2n_A 210 ----NGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQ 244 (357)
T ss_dssp ----SCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEE
T ss_pred ----CceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCC
Confidence 11112222 4666666666667888998654
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=82.10 E-value=24 Score=30.50 Aligned_cols=197 Identities=13% Similarity=0.067 Sum_probs=99.8
Q ss_pred CcEEEEecCCCceEEEEeccccceeccCCCCC--CC-CceeEEEEe-CCCCEEEEEEeec---------------CCCce
Q 017381 110 KGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTY--PF-DFELLTLVS-TPSGYKIFMLFAK---------------SFPNY 170 (372)
Q Consensus 110 ~Gll~~~~~~~~~~~v~NP~t~~~~~lP~~~~--~~-~~~~~~~~~-~~~~ykvv~~~~~---------------~~~~~ 170 (372)
+|-|++... ...+.++|+.+++.+.+..... +. ....+++++ .+ ++++.... .....
T Consensus 91 ~g~l~v~d~-~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G---~l~v~d~~~~~~~~~~~~~~~~~~~~g~ 166 (322)
T 2fp8_A 91 NNQLYIVDC-YYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTG---IVYFTDVSTLYDDRGVQQIMDTSDKTGR 166 (322)
T ss_dssp TTEEEEEET-TTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTC---CEEEEESCSSCCTTCHHHHHHHTCCCEE
T ss_pred CCcEEEEEC-CCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCC---EEEEECCcccccccccceehcccCCCce
Confidence 665555432 2458889998887655532111 11 112344443 22 45554321 11246
Q ss_pred EEEEECCCCCccccccCCCCccccccCCCcccEEEC--CE-EEEeeeCCcEEEEEecCCC---eeeccCCCCccccccCC
Q 017381 171 AFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYK--GS-LYFTTPEPFSIVRFDLENG---IWETPNDANDHMTMMLP 244 (372)
Q Consensus 171 ~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~--G~-~y~~~~~~~~i~~yD~~~~---~w~~i~~p~~~~~~~~p 244 (372)
+.+|+..++..+.... .+ ....++.++ |. +|+.......|..||+... ..+.+. . +|
T Consensus 167 v~~~d~~~~~~~~~~~------~~---~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~-~-------~~ 229 (322)
T 2fp8_A 167 LIKYDPSTKETTLLLK------EL---HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLV-K-------IP 229 (322)
T ss_dssp EEEEETTTTEEEEEEE------EE---SCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEE-E-------CS
T ss_pred EEEEeCCCCEEEEecc------CC---ccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEE-e-------CC
Confidence 8889988776543320 11 122355553 54 7766555567999998753 222211 0 22
Q ss_pred CcccccceeeeccCCCeEEEEEeeecCCc---cceEEEEEEcCCCCEEEEEecChHHHHHhhhhccCCCceEEEEeeCCE
Q 017381 245 HELTFFRLVNDGEESNKLYLIGGVGRNGI---STTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGM 321 (372)
Q Consensus 245 ~~~~~~~lv~e~~~~g~L~vv~~~~~~~~---~~~i~vw~l~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (372)
. -..+... -+|.|++......... ...-.|++++++++-...-..|.... +. ....++..++.
T Consensus 230 g---P~gi~~d--~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~---~~------~~~~~~~~~g~ 295 (322)
T 2fp8_A 230 N---PGNIKRN--ADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFA---GE------HFEQIQEHDGL 295 (322)
T ss_dssp S---EEEEEEC--TTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTT---TS------CCCEEEEETTE
T ss_pred C---CCCeEEC--CCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCc---cc------cceEEEEeCCE
Confidence 1 1123324 6789998875310000 01346888888776444434442210 00 11123346788
Q ss_pred EEEEeecCCeEEEEECCCCc
Q 017381 322 ICVCCYTWPEILYYNVARRT 341 (372)
Q Consensus 322 i~~~~~~~~~v~~yd~~~~~ 341 (372)
+|+.....+.|..|++..+.
T Consensus 296 L~v~~~~~~~i~~~~~~~~~ 315 (322)
T 2fp8_A 296 LYIGTLFHGSVGILVYDKKG 315 (322)
T ss_dssp EEEECSSCSEEEEEEC----
T ss_pred EEEeecCCCceEEEeccccc
Confidence 99988777889999987654
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=81.84 E-value=21 Score=29.58 Aligned_cols=188 Identities=11% Similarity=0.065 Sum_probs=95.8
Q ss_pred ecCcEEEEecCCCceEEEEeccccceeccCCCCCCCCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCCccccccC
Q 017381 108 SSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDID 187 (372)
Q Consensus 108 s~~Gll~~~~~~~~~~~v~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~~~~~ 187 (372)
..+|-+++... .+.+.++|+.++....++.... .....+++++.+ ++++... ....+.+|+.++.......
T Consensus 75 ~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~-~~p~~i~~~~~g---~l~v~~~--~~~~i~~~~~~~~~~~~~~-- 145 (270)
T 1rwi_B 75 DGAGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGL-NYPEGLAVDTQG---AVYVADR--GNNRVVKLAAGSKTQTVLP-- 145 (270)
T ss_dssp CTTCCEEEEET-TTEEEEECTTCSCCEECCCCSC-SSEEEEEECTTC---CEEEEEG--GGTEEEEECTTCCSCEECC--
T ss_pred CCCCCEEEEcC-CCEEEEEeCCCceEeeeecCCc-CCCcceEECCCC---CEEEEEC--CCCEEEEEECCCceeEeec--
Confidence 44565555543 5789999998877655542211 112344444322 3555432 1246778876654433221
Q ss_pred CCCccccccCCCcccEEE--CCEEEEeeeCCcEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeEEEE
Q 017381 188 GFPSMILSQSSHQEGVFY--KGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLI 265 (372)
Q Consensus 188 ~~p~~~~~~~~~~~~v~~--~G~~y~~~~~~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv 265 (372)
. . .. ....++.+ +|.+|+.......|..||..+......... .......+... -+|.|++.
T Consensus 146 ~--~-~~---~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~---------~~~~p~~i~~d--~~g~l~v~ 208 (270)
T 1rwi_B 146 F--T-GL---NDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFT---------DITAPWGIAVD--EAGTVYVT 208 (270)
T ss_dssp C--C-SC---CSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCS---------SCCSEEEEEEC--TTCCEEEE
T ss_pred c--c-cC---CCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeeccc---------CCCCceEEEEC--CCCCEEEE
Confidence 0 0 00 11224444 588887765555799999887654332111 10111223323 46788887
Q ss_pred EeeecCCccceEEEEEEcCCCCEEEEEecChHHHHHhhhhccCCCceE--EEEeeCCEEEEEeecCCeEEEEECCCCc
Q 017381 266 GGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHV--YCFWHQGMICVCCYTWPEILYYNVARRT 341 (372)
Q Consensus 266 ~~~~~~~~~~~i~vw~l~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~v~~yd~~~~~ 341 (372)
... ...+.+| +..+.-... .+. .....+ .++..++.+|+.....+.|.+|++...+
T Consensus 209 ~~~-----~~~v~~~--~~~~~~~~~--~~~-----------~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 209 EHN-----TNQVVKL--LAGSTTSTV--LPF-----------TGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp ETT-----TSCEEEE--CTTCSCCEE--CCC-----------CSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred ECC-----CCcEEEE--cCCCCccee--ecc-----------CCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 641 2344555 444431111 110 001112 2333445689988777889999988764
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=81.74 E-value=36 Score=32.28 Aligned_cols=201 Identities=8% Similarity=0.002 Sum_probs=97.4
Q ss_pred ecCcEEEEecCCCceEEEEecccccee-ccCCCCCCCCceeEEEEeCCCCEEEEEEeecCCCceEEEEEC--CCCCcccc
Q 017381 108 SSKGLLCFSLPSSSSFLVCNLVTLSSR-TIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDS--TDQSWSKF 184 (372)
Q Consensus 108 s~~Gll~~~~~~~~~~~v~NP~t~~~~-~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s--~~~~W~~~ 184 (372)
+-+|.+++....++.+.++|+.|++.. .++.. .....+++.+.++ .+++.... ..+.+||. .+++ ..
T Consensus 146 ~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g---~~~~~v~~spdg~--~l~v~~~d---~~V~v~D~~~~t~~--~~ 215 (543)
T 1nir_A 146 DLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTG---YAVHISRMSASGR--YLLVIGRD---ARIDMIDLWAKEPT--KV 215 (543)
T ss_dssp CGGGEEEEEEGGGTEEEEEETTTCCEEEEEECS---TTEEEEEECTTSC--EEEEEETT---SEEEEEETTSSSCE--EE
T ss_pred CCCCEEEEEEcCCCeEEEEECCCceEEEEEecC---cccceEEECCCCC--EEEEECCC---CeEEEEECcCCCCc--EE
Confidence 346666665555678999999998753 33311 1123344433222 44444432 78999999 5543 22
Q ss_pred ccCCCCccccccCCCcccEEE------CCE-EEEeeeCCcEEEEEecCCCeeec-cCCCCcccc--ccCCCcccccceee
Q 017381 185 DIDGFPSMILSQSSHQEGVFY------KGS-LYFTTPEPFSIVRFDLENGIWET-PNDANDHMT--MMLPHELTFFRLVN 254 (372)
Q Consensus 185 ~~~~~p~~~~~~~~~~~~v~~------~G~-~y~~~~~~~~i~~yD~~~~~w~~-i~~p~~~~~--~~~p~~~~~~~lv~ 254 (372)
. .++.+ .....+.+ +|+ +|..+.....+.++|..+.+-.. +...+...+ .+.|... ...++.
T Consensus 216 ~--~i~~g-----~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~-v~~i~~ 287 (543)
T 1nir_A 216 A--EIKIG-----IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPR-VAAIIA 287 (543)
T ss_dssp E--EEECC-----SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCC-EEEEEE
T ss_pred E--EEecC-----CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCc-eEEEEE
Confidence 2 12211 11122333 564 55555445678999988765432 221100000 0001101 112332
Q ss_pred eccCCCeEEEEEeeecCCccceEEEEEEcCCCCEEEEEecChHHHHHhhhhccCCCceEEEEe-eCCEEEEEeecCCeEE
Q 017381 255 DGEESNKLYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFW-HQGMICVCCYTWPEIL 333 (372)
Q Consensus 255 e~~~~g~L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~v~ 333 (372)
. -+|..+++.. .....+.+|.+...+.- ++.+++.. . ...-..+. .+..+++.....+.|.
T Consensus 288 s--~~~~~~~vs~----~~~g~i~vvd~~~~~~l-~~~~i~~~---~--------~~~~~~~spdg~~l~va~~~~~~v~ 349 (543)
T 1nir_A 288 S--HEHPEFIVNV----KETGKVLLVNYKDIDNL-TVTSIGAA---P--------FLHDGGWDSSHRYFMTAANNSNKVA 349 (543)
T ss_dssp C--SSSSEEEEEE----TTTTEEEEEECTTSSSC-EEEEEECC---S--------SCCCEEECTTSCEEEEEEGGGTEEE
T ss_pred C--CCCCEEEEEE----CCCCeEEEEEecCCCcc-eeEEeccC---c--------CccCceECCCCCEEEEEecCCCeEE
Confidence 1 3455444443 12357777776543331 12233211 0 01112332 4455677766678899
Q ss_pred EEECCCCceEE
Q 017381 334 YYNVARRTWHW 344 (372)
Q Consensus 334 ~yd~~~~~w~~ 344 (372)
++|+++++...
T Consensus 350 v~D~~tg~l~~ 360 (543)
T 1nir_A 350 VIDSKDRRLSA 360 (543)
T ss_dssp EEETTTTEEEE
T ss_pred EEECCCCeEEE
Confidence 99999997654
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=81.68 E-value=30 Score=31.21 Aligned_cols=106 Identities=10% Similarity=0.044 Sum_probs=59.6
Q ss_pred ecCcEEEEecCCCceEEEEeccccceeccCCCCC-CCCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCCcccccc
Q 017381 108 SSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTY-PFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDI 186 (372)
Q Consensus 108 s~~Gll~~~~~~~~~~~v~NP~t~~~~~lP~~~~-~~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~~~~ 186 (372)
|.+++|.+.. ++.++|||..|++...+-.... ......+++.+.+ +.++.++ ....+.+||..+++= +.
T Consensus 114 S~~n~lAvgl--d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg---~~lasgs--~Dg~v~iWd~~~~~~--~~- 183 (420)
T 4gga_A 114 SSGNVLAVAL--DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEG---NYLAVGT--SSAEVQLWDVQQQKR--LR- 183 (420)
T ss_dssp CTTSEEEEEE--TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTS---SEEEEEE--TTSCEEEEETTTTEE--EE-
T ss_pred CCCCEEEEEe--CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCC---CEEEEEE--CCCeEEEEEcCCCcE--EE-
Confidence 4566655543 4799999999998765433321 1122345554332 3444444 345788999887642 11
Q ss_pred CCCCccccccCCCcccEEECCEEEEeeeCCcEEEEEecCCCe
Q 017381 187 DGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENGI 228 (372)
Q Consensus 187 ~~~p~~~~~~~~~~~~v~~~G~~y~~~~~~~~i~~yD~~~~~ 228 (372)
.+.. +......+..++.+...+.....+..+|.....
T Consensus 184 -~~~~----h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~ 220 (420)
T 4gga_A 184 -NMTS----HSARVGSLSWNSYILSSGSRSGHIHHHDVRVAE 220 (420)
T ss_dssp -EECC----CSSCEEEEEEETTEEEEEETTSEEEEEETTSSS
T ss_pred -EEeC----CCCceEEEeeCCCEEEEEeCCCceeEeeecccc
Confidence 1111 111223455677766666666678888876543
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=81.39 E-value=31 Score=31.27 Aligned_cols=106 Identities=6% Similarity=-0.016 Sum_probs=53.7
Q ss_pred EEEEecCCCceEEEEeccccceeccCCC-CCCCCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCCccccccCCCC
Q 017381 112 LLCFSLPSSSSFLVCNLVTLSSRTIDFP-TYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFP 190 (372)
Q Consensus 112 ll~~~~~~~~~~~v~NP~t~~~~~lP~~-~~~~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p 190 (372)
+|.. +..++.+.|||..+++...+-.. .-......+.+.+.... .++. ++ .+..+.+||.+++.-+... ...
T Consensus 134 ~las-Gs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~-~l~s-~s--~D~~v~iwd~~~~~~~~~~--~~~ 206 (435)
T 4e54_B 134 TVAV-GSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTN-QFYA-SS--MEGTTRLQDFKGNILRVFA--SSD 206 (435)
T ss_dssp CEEE-EETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTT-EEEE-EC--SSSCEEEEETTSCEEEEEE--CCS
T ss_pred EEEE-EeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCC-EEEE-Ee--CCCEEEEeeccCCceeEEe--ccC
Confidence 4433 33467899999988875433221 11112234455432222 3333 32 2356888998876554433 111
Q ss_pred ccccccCCCcccEEE--CCEEEEeeeCCcEEEEEecCCCe
Q 017381 191 SMILSQSSHQEGVFY--KGSLYFTTPEPFSIVRFDLENGI 228 (372)
Q Consensus 191 ~~~~~~~~~~~~v~~--~G~~y~~~~~~~~i~~yD~~~~~ 228 (372)
. . ......+.+ +|.+.+.+.....|..+|+..+.
T Consensus 207 ~--~--~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~ 242 (435)
T 4e54_B 207 T--I--NIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE 242 (435)
T ss_dssp S--C--SCCCCCEEEETTTTEEEEECSSSBEEEEESSSCB
T ss_pred C--C--CccEEEEEECCCCCEEEEEeCCCcEeeeccCcce
Confidence 1 0 011112222 56666666655678899987654
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=81.35 E-value=24 Score=29.96 Aligned_cols=190 Identities=14% Similarity=0.086 Sum_probs=89.4
Q ss_pred CceEEEEeccccceeccCCCC---CCCCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCCcccc-ccCCCCccccc
Q 017381 120 SSSFLVCNLVTLSSRTIDFPT---YPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKF-DIDGFPSMILS 195 (372)
Q Consensus 120 ~~~~~v~NP~t~~~~~lP~~~---~~~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~~-~~~~~p~~~~~ 195 (372)
.+.+.++|+.+++...+.... .......+.+++ +.-++++... ...+.+|+.. ++.+.. . .... ...
T Consensus 45 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~--~~g~l~v~~~---~~~l~~~d~~-g~~~~~~~--~~~~-~~~ 115 (314)
T 1pjx_A 45 AGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR--DANQLFVADM---RLGLLVVQTD-GTFEEIAK--KDSE-GRR 115 (314)
T ss_dssp CCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS--SSSEEEEEET---TTEEEEEETT-SCEEECCS--BCTT-SCB
T ss_pred CCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEec--CCCcEEEEEC---CCCEEEEeCC-CCEEEEEe--ccCC-Ccc
Confidence 467899999898876554210 001112333332 2124555432 1368889988 766544 2 1111 010
Q ss_pred cCCCcccEEE--CCEEEEeeeCC---------------cEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccC
Q 017381 196 QSSHQEGVFY--KGSLYFTTPEP---------------FSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEE 258 (372)
Q Consensus 196 ~~~~~~~v~~--~G~~y~~~~~~---------------~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~ 258 (372)
. .....+.+ +|.+|+.+... ..+..||+. .+...+.... -.|..... .++.. -
T Consensus 116 ~-~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~-----~~~~~i~~-~~~~d--~ 185 (314)
T 1pjx_A 116 M-QGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAF-----QFPNGIAV-RHMND--G 185 (314)
T ss_dssp C-BCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEE-----SSEEEEEE-EECTT--S
T ss_pred c-cCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCC-----CCcceEEE-ecccC--C
Confidence 0 11223444 57888765432 468888876 4444321010 01221110 00000 2
Q ss_pred CC-eEEEEEeeecCCccceEEEEEEcCCCCEEEE---EecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeecCCeEEE
Q 017381 259 SN-KLYLIGGVGRNGISTTMKLWELGCGGNWIEV---ERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILY 334 (372)
Q Consensus 259 ~g-~L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v---~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~ 334 (372)
+| .|++... ....+.+|.++..+..... ..++... . ....-.++..++.+++.....+.|..
T Consensus 186 dg~~l~v~~~-----~~~~i~~~~~~~~g~~~~~~~~~~~~~~~----~-----~~p~~i~~d~~G~l~v~~~~~~~i~~ 251 (314)
T 1pjx_A 186 RPYQLIVAET-----PTKKLWSYDIKGPAKIENKKVWGHIPGTH----E-----GGADGMDFDEDNNLLVANWGSSHIEV 251 (314)
T ss_dssp CEEEEEEEET-----TTTEEEEEEEEETTEEEEEEEEEECCCCS----S-----CEEEEEEEBTTCCEEEEEETTTEEEE
T ss_pred CCCEEEEEEC-----CCCeEEEEECCCCCccccceEEEECCCCC----C-----CCCCceEECCCCCEEEEEcCCCEEEE
Confidence 45 4666543 1346777766533333221 2222100 0 00111233445678888766678999
Q ss_pred EECCCCce
Q 017381 335 YNVARRTW 342 (372)
Q Consensus 335 yd~~~~~w 342 (372)
||+++++.
T Consensus 252 ~d~~~g~~ 259 (314)
T 1pjx_A 252 FGPDGGQP 259 (314)
T ss_dssp ECTTCBSC
T ss_pred EcCCCCcE
Confidence 99986543
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=81.30 E-value=29 Score=30.94 Aligned_cols=107 Identities=12% Similarity=-0.005 Sum_probs=54.8
Q ss_pred ecCcEEEEecCCCceEEEEeccccceeccCCCCCCCCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCCccccccC
Q 017381 108 SSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDID 187 (372)
Q Consensus 108 s~~Gll~~~~~~~~~~~v~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~~~~~ 187 (372)
+.+|-.++.+..++.+.+||..+++....-... ......+.+.+.+ -.++ .++ ....+.+||..++.-...-
T Consensus 132 s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h-~~~v~~~~~~p~~--~~l~-s~s--~d~~v~iwd~~~~~~~~~~-- 203 (393)
T 1erj_A 132 SPDGKFLATGAEDRLIRIWDIENRKIVMILQGH-EQDIYSLDYFPSG--DKLV-SGS--GDRTVRIWDLRTGQCSLTL-- 203 (393)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEECTTS--SEEE-EEE--TTSEEEEEETTTTEEEEEE--
T ss_pred CCCCCEEEEEcCCCeEEEEECCCCcEEEEEccC-CCCEEEEEEcCCC--CEEE-Eec--CCCcEEEEECCCCeeEEEE--
Confidence 446633333334678999999887753321110 1112233443322 2333 332 3467889998876543221
Q ss_pred CCCccccccCCCcccEEE---CCEEEEeeeCCcEEEEEecCCCee
Q 017381 188 GFPSMILSQSSHQEGVFY---KGSLYFTTPEPFSIVRFDLENGIW 229 (372)
Q Consensus 188 ~~p~~~~~~~~~~~~v~~---~G~~y~~~~~~~~i~~yD~~~~~w 229 (372)
... .....+.+ +|.+...+.....|..||+.+.+.
T Consensus 204 ~~~-------~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~ 241 (393)
T 1erj_A 204 SIE-------DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFL 241 (393)
T ss_dssp ECS-------SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCE
T ss_pred EcC-------CCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcE
Confidence 111 11112222 566666666666799999887654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 372 | ||||
| d1fs1a1 | 41 | a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [ | 8e-09 | |
| d2ovrb1 | 102 | a.158.1.1 (B:2263-2364) F-box/WD repeat-containing | 3e-07 | |
| d1nexb1 | 100 | a.158.1.1 (B:270-369) Cdc4 F-box and linker domain | 2e-05 | |
| d1p22a1 | 118 | a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b | 7e-04 |
| >d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.9 bits (117), Expect = 8e-09
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 13 WSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSF 52
W LP++LL + S L LLK+ CK + L S
Sbjct: 1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 40
|
| >d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.8 bits (108), Expect = 3e-07
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 5/79 (6%)
Query: 13 WSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSFLSKTKCSSSAFSCFILLSHP 72
S LP++L +VLSFL PK LL+ TC+++ L L + KC + +
Sbjct: 19 ISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNL-LWREKCKEEGIDEPLHIKRR 77
Query: 73 QCYDQYPLYDSTHGTWRRL 91
+ + H W+
Sbjct: 78 KVIKPGFI----HSPWKSA 92
|
| >d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: Cdc4 F-box and linker domains species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.8 bits (95), Expect = 2e-05
Identities = 8/51 (15%), Positives = 23/51 (45%)
Query: 13 WSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSFLSKTKCSSSAF 63
+ LP ++ + ++L + ++ +++N ++ + L K S F
Sbjct: 6 ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISENF 56
|
| >d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.1 bits (85), Expect = 7e-04
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 4/45 (8%)
Query: 12 IWSRLPEDLLDHV----LSFLPPKMLLKLRSTCKHFNSLLFSPSF 52
+ LP LDH+ LS+L K L CK + +
Sbjct: 10 FITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGML 54
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 372 | |||
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 99.74 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 99.56 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 99.41 | |
| d1fs1a1 | 41 | Skp2 {Human (Homo sapiens) [TaxId: 9606]} | 99.24 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 99.01 | |
| d2ovrb1 | 102 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 98.55 | |
| d1nexb1 | 100 | Cdc4 F-box and linker domains {Baker's yeast (Sacc | 98.47 | |
| d1p22a1 | 118 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 98.11 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 93.77 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 87.97 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 85.39 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 84.87 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 83.95 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 83.37 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 81.53 |
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=5.1e-16 Score=136.73 Aligned_cols=240 Identities=17% Similarity=0.130 Sum_probs=164.5
Q ss_pred ccccccCCCCCeeeecCCCCCCCCCceEEEEecCcEEEEecC---------CCceEEEEeccccceeccCCCCCCCCcee
Q 017381 77 QYPLYDSTHGTWRRLSLPYSLLLPSAATLLSSSKGLLCFSLP---------SSSSFLVCNLVTLSSRTIDFPTYPFDFEL 147 (372)
Q Consensus 77 ~~~~~d~~~~~w~~l~~~~~~~~~~~~~~~~s~~Gll~~~~~---------~~~~~~v~NP~t~~~~~lP~~~~~~~~~~ 147 (372)
.+..||+..++|.+++ .+|.++..+..++.+|-+++.++ ....+.+|||.+++|.++|+++.++..+.
T Consensus 20 ~~~~yd~~t~~W~~~~---~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~ 96 (288)
T d1zgka1 20 YLEAYNPSNGTWLRLA---DLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIG 96 (288)
T ss_dssp CEEEEETTTTEEEECC---CCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCE
T ss_pred eEEEEECCCCeEEECC---CCCCccceeEEEEECCEEEEEeCcccCCCCccccchhhhcccccccccccccccceeccee
Confidence 4567999999999985 23334444445555665555443 12478999999999999999887776655
Q ss_pred EEEEeCCCCEEEEEEeecCC---CceEEEEECCCCCccccccCCCCccccccCCCcccEEECCEEEEeeeC-----CcEE
Q 017381 148 LTLVSTPSGYKIFMLFAKSF---PNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPE-----PFSI 219 (372)
Q Consensus 148 ~~~~~~~~~ykvv~~~~~~~---~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~~y~~~~~-----~~~i 219 (372)
.+.... +++++++... ...+++|+..++.|.... ..+. .+..+..+..++.+|.+++. ...+
T Consensus 97 ~~~~~~----~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~--~~~~----~r~~~~~~~~~~~~~~~GG~~~~~~~~~~ 166 (288)
T d1zgka1 97 VGVIDG----HIYAVGGSHGCIHHNSVERYEPERDEWHLVA--PMLT----RRIGVGVAVLNRLLYAVGGFDGTNRLNSA 166 (288)
T ss_dssp EEEETT----EEEEECCEETTEECCCEEEEETTTTEEEECC--CCSS----CCBSCEEEEETTEEEEECCBCSSCBCCCE
T ss_pred ccccce----eeEEecceecccccceeeeeccccCcccccc--cccc----ccccceeeeeeecceEecCcccccccceE
Confidence 544322 7888776432 347899999999998887 4443 23456678889999988753 2458
Q ss_pred EEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeEEEEEeeecCCccceEEEEEEcCCCC-EEEEEecChHH
Q 017381 220 VRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGN-WIEVERVPEMM 298 (372)
Q Consensus 220 ~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~~~~~-W~~v~~lp~~~ 298 (372)
..||+.+++|..... .+.......... .+++|+++++.... ......|.++.... |+.+..+|..
T Consensus 167 ~~~d~~~~~~~~~~~--------~~~~~~~~~~~~---~~~~i~i~GG~~~~--~~~~~~~~~~~~~~~~~~~~~~p~~- 232 (288)
T d1zgka1 167 ECYYPERNEWRMITA--------MNTIRSGAGVCV---LHNCIYAAGGYDGQ--DQLNSVERYDVETETWTFVAPMKHR- 232 (288)
T ss_dssp EEEETTTTEEEECCC--------CSSCCBSCEEEE---ETTEEEEECCBCSS--SBCCCEEEEETTTTEEEECCCCSSC-
T ss_pred EEeeccccccccccc--------cccccccccccc---eeeeEEEecCcccc--ccccceeeeeecceeeecccCccCc-
Confidence 999999999997642 333333344443 78999999885422 22334555565555 9988766522
Q ss_pred HHHhhhhccCCCceEEEEeeCCEEEEEeec-----CCeEEEEECCCCceEECCCCCCCCCC
Q 017381 299 CRKFMSVCYHNYDHVYCFWHQGMICVCCYT-----WPEILYYNVARRTWHWLPSCPSLPHK 354 (372)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~v~~yd~~~~~w~~v~~~~~~~~~ 354 (372)
+....++..+++||+.++. ...+.+||+++++|+.++.+|.++.-
T Consensus 233 -----------r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~R~~ 282 (288)
T d1zgka1 233 -----------RSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTSGRSG 282 (288)
T ss_dssp -----------CBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBS
T ss_pred -----------ccceEEEEECCEEEEEecCCCCeecceEEEEECCCCEEEECCCCCCCcEe
Confidence 1223445568889998642 23589999999999999999887643
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=4.7e-13 Score=117.30 Aligned_cols=201 Identities=12% Similarity=0.087 Sum_probs=139.8
Q ss_pred ceEEEEeccccceeccCCCCCCCCceeEEEEeCCCCEEEEEEeecC-------CCceEEEEECCCCCccccccCCCCccc
Q 017381 121 SSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKS-------FPNYAFVYDSTDQSWSKFDIDGFPSMI 193 (372)
Q Consensus 121 ~~~~v~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~-------~~~~~~vy~s~~~~W~~~~~~~~p~~~ 193 (372)
+.+.+|||.|++|.+++++|.++..+..+.... +++++||.. ....+++||+.+++|+... .+|.
T Consensus 19 ~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~----~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~--~~p~-- 90 (288)
T d1zgka1 19 SYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGG----LLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCA--PMSV-- 90 (288)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEETT----EEEEECCEEEETTEEEECCCEEEEETTTTEEEECC--CCSS--
T ss_pred ceEEEEECCCCeEEECCCCCCccceeEEEEECC----EEEEEeCcccCCCCccccchhhhcccccccccccc--cccc--
Confidence 478899999999999999887766555444322 788888742 2348999999999999998 6664
Q ss_pred cccCCCcccEEECCEEEEeeeC-----CcEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeEEEEEee
Q 017381 194 LSQSSHQEGVFYKGSLYFTTPE-----PFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGV 268 (372)
Q Consensus 194 ~~~~~~~~~v~~~G~~y~~~~~-----~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~ 268 (372)
.+..+.++.++|++|++++. ......||+.++.|.... + +|..+..+..+ . .+++++++++.
T Consensus 91 --~r~~~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~r~~~~~~-~--~~~~~~~~GG~ 157 (288)
T d1zgka1 91 --PRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVA-P-------MLTRRIGVGVA-V--LNRLLYAVGGF 157 (288)
T ss_dssp --CCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECC-C-------CSSCCBSCEEE-E--ETTEEEEECCB
T ss_pred --eecceeccccceeeEEecceecccccceeeeeccccCcccccc-c-------cccccccceee-e--eeecceEecCc
Confidence 23456678899999998642 234788999999998753 2 44444445555 3 78999999885
Q ss_pred ecCCccceEEEEEEcCCCC-EEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeec-----CCeEEEEECCCCce
Q 017381 269 GRNGISTTMKLWELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYT-----WPEILYYNVARRTW 342 (372)
Q Consensus 269 ~~~~~~~~i~vw~l~~~~~-W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~v~~yd~~~~~w 342 (372)
....... .++.++.... |......+.. ......+..++.|++.+.. ......||+.+++|
T Consensus 158 ~~~~~~~--~~~~~d~~~~~~~~~~~~~~~------------~~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~ 223 (288)
T d1zgka1 158 DGTNRLN--SAECYYPERNEWRMITAMNTI------------RSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETW 223 (288)
T ss_dssp CSSCBCC--CEEEEETTTTEEEECCCCSSC------------CBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred ccccccc--eEEEeeccccccccccccccc------------cccccccceeeeEEEecCccccccccceeeeeecceee
Confidence 4322223 4555565555 8876554422 1123344566778877642 23579999999999
Q ss_pred EECCCCCCCCCCCc
Q 017381 343 HWLPSCPSLPHKWS 356 (372)
Q Consensus 343 ~~v~~~~~~~~~~~ 356 (372)
+.++..|.++..++
T Consensus 224 ~~~~~~p~~r~~~~ 237 (288)
T d1zgka1 224 TFVAPMKHRRSALG 237 (288)
T ss_dssp EECCCCSSCCBSCE
T ss_pred ecccCccCcccceE
Confidence 99998887765433
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=99.41 E-value=1.7e-12 Score=118.49 Aligned_cols=261 Identities=11% Similarity=0.049 Sum_probs=150.8
Q ss_pred cccccCCCCCeeeecCC-CCCCCCCceEEEEecCcEEEEecC-CCceEEEEeccccceeccCCCCCCCCceeEEEEeCCC
Q 017381 78 YPLYDSTHGTWRRLSLP-YSLLLPSAATLLSSSKGLLCFSLP-SSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPS 155 (372)
Q Consensus 78 ~~~~d~~~~~w~~l~~~-~~~~~~~~~~~~~s~~Gll~~~~~-~~~~~~v~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~ 155 (372)
...||+..++|..++.. .+. ...........+|.+++.+. ..+.+.+|||.+++|..+|.++.++..+..+...
T Consensus 54 ~~~yd~~t~~w~~~~~~~~~~-~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~--- 129 (387)
T d1k3ia3 54 TSSWDPSTGIVSDRTVTVTKH-DMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS--- 129 (387)
T ss_dssp EEEECTTTCCBCCCEEEECSC-CCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT---
T ss_pred EEEEECCCCcEeecCCCCCCc-ccceeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeec---
Confidence 45699999999866421 111 11222334456776655543 4568999999999999999998776655544332
Q ss_pred CEEEEEEeecCC----CceEEEEECCCCCccccccCCCCccccccC-------C-CcccEE--ECCEEEEeeeCCcEEEE
Q 017381 156 GYKIFMLFAKSF----PNYAFVYDSTDQSWSKFDIDGFPSMILSQS-------S-HQEGVF--YKGSLYFTTPEPFSIVR 221 (372)
Q Consensus 156 ~ykvv~~~~~~~----~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~-------~-~~~~v~--~~G~~y~~~~~~~~i~~ 221 (372)
+-+|+++++... ...+++||+.+++|+... .++....... . ....++ .+|++|..+.....+..
T Consensus 130 dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~ 207 (387)
T d1k3ia3 130 DGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLP--NAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWY 207 (387)
T ss_dssp TSCEEEECCCCCSSSCCCCEEEEETTTTEEEEET--TSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEE
T ss_pred CCceeeeccccccccccceeeeecCCCCceeecC--CCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEe
Confidence 226888877432 348999999999999876 3332111000 0 111122 26788777665556888
Q ss_pred EecCCCeeeccCCCCccccccCCCcccc-cceeeeccCCCeEEEEEeeecCC---ccceEEEEEEcCCC-C---EEEEEe
Q 017381 222 FDLENGIWETPNDANDHMTMMLPHELTF-FRLVNDGEESNKLYLIGGVGRNG---ISTTMKLWELGCGG-N---WIEVER 293 (372)
Q Consensus 222 yD~~~~~w~~i~~p~~~~~~~~p~~~~~-~~lv~e~~~~g~L~vv~~~~~~~---~~~~i~vw~l~~~~-~---W~~v~~ 293 (372)
||+.+..|....... ......+..... ..+... .+|+++++++..... ......+..+.... . |+.+..
T Consensus 208 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (387)
T d1k3ia3 208 YTSGSGDVKSAGKRQ-SNRGVAPDAMCGNAVMYDA--VKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNG 284 (387)
T ss_dssp ECSTTCEEEEEEECE-ETTEECCCCBTCEEEEEET--TTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTC
T ss_pred cCcccCcEeeccccc-cCcccCcccccccEEEeec--cCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccc
Confidence 999999997642110 000001111111 112212 689999999854211 11233444332222 2 555555
Q ss_pred cChHHHHHhhhhccCCCceEEEEeeCCEEEEEeecC-----------CeEEEEECCCCceEECCCCCCCCCCCccc
Q 017381 294 VPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTW-----------PEILYYNVARRTWHWLPSCPSLPHKWSCG 358 (372)
Q Consensus 294 lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----------~~v~~yd~~~~~w~~v~~~~~~~~~~~~~ 358 (372)
||... .....++..+++||+.+... ..+.+||+++++|+.++.+|.++.-++..
T Consensus 285 ~p~~r-----------~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~~~~R~~Hs~a 349 (387)
T d1k3ia3 285 LYFAR-----------TFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSIS 349 (387)
T ss_dssp CSSCC-----------BSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEE
T ss_pred ccccc-----------ccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEECCCCCCcccceEEE
Confidence 54221 11222333466788876421 24789999999999999999887655543
|
| >d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=2.5e-12 Score=76.81 Aligned_cols=40 Identities=35% Similarity=0.595 Sum_probs=37.1
Q ss_pred hcCCCHHHHHHHHccCCchhhhHHhhchhhhhhcccChhh
Q 017381 13 WSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSF 52 (372)
Q Consensus 13 ~~~LP~dll~~IL~rLp~~~l~r~r~Vck~W~~~i~~~~F 52 (372)
|..||+|++.+||++||.+++.++++|||+|+.+++++.+
T Consensus 1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~l 40 (41)
T d1fs1a1 1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 40 (41)
T ss_dssp CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGG
T ss_pred CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Confidence 5789999999999999999999999999999999987653
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=99.01 E-value=3.7e-10 Score=102.66 Aligned_cols=203 Identities=8% Similarity=0.000 Sum_probs=119.9
Q ss_pred eccccceeccCCCCCCCCceeEEEEeCCCCEEEEEEeecCC---------CceEEEEECCCCCccccccCCCCccccccC
Q 017381 127 NLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSF---------PNYAFVYDSTDQSWSKFDIDGFPSMILSQS 197 (372)
Q Consensus 127 NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~~---------~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~ 197 (372)
.|.+++|...+++|.... ..+.... +-||+++++... ...+++||+.+++|+... .++. .. ..
T Consensus 5 ~p~~g~W~~~~~~p~~~~--~~a~~~~--~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~--~~~~-~~-~~ 76 (387)
T d1k3ia3 5 QPGLGRWGPTIDLPIVPA--AAAIEPT--SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRT--VTVT-KH-DM 76 (387)
T ss_dssp CTTSCEEEEEEECSSCCS--EEEEETT--TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCE--EEEC-SC-CC
T ss_pred CCCCCccCCcCCCCcccc--EEEEEee--CCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecC--CCCC-Cc-cc
Confidence 488899998877764432 3333332 238999988431 126889999999998765 2222 01 11
Q ss_pred CCc-ccEEECCEEEEeeeC-CcEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeEEEEEeeecCC-cc
Q 017381 198 SHQ-EGVFYKGSLYFTTPE-PFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNG-IS 274 (372)
Q Consensus 198 ~~~-~~v~~~G~~y~~~~~-~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~vv~~~~~~~-~~ 274 (372)
... ..+..+|++|+.++. ...+..||+.+++|.... + +|..+..+..+.. .+|+++++++..... ..
T Consensus 77 ~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~-~-------~~~~r~~~~~~~~--~dG~v~v~GG~~~~~~~~ 146 (387)
T d1k3ia3 77 FCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGP-D-------MQVARGYQSSATM--SDGRVFTIGGSWSGGVFE 146 (387)
T ss_dssp SSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECC-C-------CSSCCSSCEEEEC--TTSCEEEECCCCCSSSCC
T ss_pred ceeEEEEecCCcEEEeecCCCcceeEecCccCcccccc-c-------ccccccccceeee--cCCceeeecccccccccc
Confidence 111 223348899988753 356899999999999863 3 5554443333322 589999998853211 22
Q ss_pred ceEEEEEEcCCCC-EEEEEecChHHHHHhhh--hccCCCceEEEEeeCCEEEEEeecCCeEEEEECCCCceEECCCCC
Q 017381 275 TTMKLWELGCGGN-WIEVERVPEMMCRKFMS--VCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRTWHWLPSCP 349 (372)
Q Consensus 275 ~~i~vw~l~~~~~-W~~v~~lp~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~yd~~~~~w~~v~~~~ 349 (372)
..+++| |...+ |+.+..++......... ..............++.+++.+.....+..||..+..|...+..+
T Consensus 147 ~~v~~y--d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 222 (387)
T d1k3ia3 147 KNGEVY--SPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQ 222 (387)
T ss_dssp CCEEEE--ETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECE
T ss_pred ceeeee--cCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccc
Confidence 345555 55555 99886554332110000 000011122233445667776655567899999999998875444
|
| >d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.55 E-value=1.7e-08 Score=73.31 Aligned_cols=44 Identities=36% Similarity=0.462 Sum_probs=39.9
Q ss_pred hhhcCCCHHHHHHHHccCCchhhhHHhhchhhhhhcccChhhhc
Q 017381 11 AIWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSFLS 54 (372)
Q Consensus 11 ~~~~~LP~dll~~IL~rLp~~~l~r~r~Vck~W~~~i~~~~F~~ 54 (372)
..++.||+|++.+||++||+.+++++++|||+|+.++.++.+=+
T Consensus 17 D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~~~~~lW~ 60 (102)
T d2ovrb1 17 DFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWR 60 (102)
T ss_dssp STTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHH
T ss_pred CChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 45788999999999999999999999999999999998876543
|
| >d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: Cdc4 F-box and linker domains species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.47 E-value=1.5e-08 Score=73.29 Aligned_cols=41 Identities=15% Similarity=0.316 Sum_probs=36.9
Q ss_pred hhhcCCCHHHHHHHHccCCchhhhHHhhchhhhhhccc-Chh
Q 017381 11 AIWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLF-SPS 51 (372)
Q Consensus 11 ~~~~~LP~dll~~IL~rLp~~~l~r~r~Vck~W~~~i~-~~~ 51 (372)
..++.||+||+.+||+.|+++++++++.|||+|+.+++ ++.
T Consensus 4 D~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~~ 45 (100)
T d1nexb1 4 DLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTS 45 (100)
T ss_dssp CHHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCSH
T ss_pred CchhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHH
Confidence 35788999999999999999999999999999999985 444
|
| >d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.11 E-value=3e-07 Score=68.40 Aligned_cols=44 Identities=20% Similarity=0.400 Sum_probs=38.0
Q ss_pred hhhcCCC----HHHHHHHHccCCchhhhHHhhchhhhhhcccChhhhc
Q 017381 11 AIWSRLP----EDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSFLS 54 (372)
Q Consensus 11 ~~~~~LP----~dll~~IL~rLp~~~l~r~r~Vck~W~~~i~~~~F~~ 54 (372)
..++.|| +||+.+||+.|++.+|+++++|||.|+.+++++.+=+
T Consensus 9 D~i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~~d~~lWk 56 (118)
T d1p22a1 9 DFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWK 56 (118)
T ss_dssp CHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHH
T ss_pred cHHHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 3567777 5999999999999999999999999999998765533
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=93.77 E-value=1.5 Score=36.19 Aligned_cols=201 Identities=10% Similarity=0.041 Sum_probs=99.7
Q ss_pred EecCcEEEEecCCCceEEEEeccccceeccCCCCCCCCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCCcccccc
Q 017381 107 SSSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDI 186 (372)
Q Consensus 107 ~s~~Gll~~~~~~~~~~~v~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~~~~ 186 (372)
...+|-|++.+-..++++.+||.+++....+.+. ....++.... . .+++... ..+..||+.+++.+.+.
T Consensus 26 d~~~~~l~wvDi~~~~I~r~d~~~g~~~~~~~~~---~~~~i~~~~d--g-~l~va~~----~gl~~~d~~tg~~~~l~- 94 (295)
T d2ghsa1 26 DPASGTAWWFNILERELHELHLASGRKTVHALPF---MGSALAKISD--S-KQLIASD----DGLFLRDTATGVLTLHA- 94 (295)
T ss_dssp ETTTTEEEEEEGGGTEEEEEETTTTEEEEEECSS---CEEEEEEEET--T-EEEEEET----TEEEEEETTTCCEEEEE-
T ss_pred ECCCCEEEEEECCCCEEEEEECCCCeEEEEECCC---CcEEEEEecC--C-CEEEEEe----CccEEeecccceeeEEe-
Confidence 3445544544434568889999999866543221 1234455433 2 3443322 46889999999988775
Q ss_pred CCCCccccccCCCcccE-EECCEEEEeeeC----CcEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCe
Q 017381 187 DGFPSMILSQSSHQEGV-FYKGSLYFTTPE----PFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNK 261 (372)
Q Consensus 187 ~~~p~~~~~~~~~~~~v-~~~G~~y~~~~~----~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~ 261 (372)
..+. ..+......++ --+|.+|+-... ...-..|.....+...+... ...|.+. .+.. .+..
T Consensus 95 -~~~~-~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-----~~~~Ng~----~~s~--d~~~ 161 (295)
T d2ghsa1 95 -ELES-DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-----ISIPNSI----CFSP--DGTT 161 (295)
T ss_dssp -CSST-TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-----ESSEEEE----EECT--TSCE
T ss_pred -eeec-CCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-----cCCccee----eecC--CCce
Confidence 3322 11111111122 226777765431 11123344444554443211 0022221 1211 2334
Q ss_pred EEEEEeeecCCccceEEEEEEcCCCC-----EEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeecCCeEEEEE
Q 017381 262 LYLIGGVGRNGISTTMKLWELGCGGN-----WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYN 336 (372)
Q Consensus 262 L~vv~~~~~~~~~~~i~vw~l~~~~~-----W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~yd 336 (372)
|+++.. ....|..+.+|.+.. .......+.. .....-.++..++.|++.....+.|..||
T Consensus 162 l~~~dt-----~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~----------~g~pdG~~vD~~GnlWva~~~~g~V~~~d 226 (295)
T d2ghsa1 162 GYFVDT-----KVNRLMRVPLDARTGLPTGKAEVFIDSTGI----------KGGMDGSVCDAEGHIWNARWGEGAVDRYD 226 (295)
T ss_dssp EEEEET-----TTCEEEEEEBCTTTCCBSSCCEEEEECTTS----------SSEEEEEEECTTSCEEEEEETTTEEEEEC
T ss_pred EEEeec-----ccceeeEeeecccccccccceEEEeccCcc----------cccccceEEcCCCCEEeeeeCCCceEEec
Confidence 666543 234555666654322 1112222111 00112234555666899887778899999
Q ss_pred CCCCceEECC
Q 017381 337 VARRTWHWLP 346 (372)
Q Consensus 337 ~~~~~w~~v~ 346 (372)
++.+....++
T Consensus 227 p~G~~~~~i~ 236 (295)
T d2ghsa1 227 TDGNHIARYE 236 (295)
T ss_dssp TTCCEEEEEE
T ss_pred CCCcEeeEec
Confidence 9888777764
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=87.97 E-value=7.5 Score=33.50 Aligned_cols=200 Identities=8% Similarity=-0.007 Sum_probs=97.9
Q ss_pred EEEEecCCCceEEEEeccccceeccCCCCCCCCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCCccccccCCCCc
Q 017381 112 LLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPS 191 (372)
Q Consensus 112 ll~~~~~~~~~~~v~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~ 191 (372)
++.+.....+.+.|||+.|++...--+.. .....++|.+.++ .++.. + ....+.+||..+++-.... .++.
T Consensus 33 ~~~v~~~d~g~v~v~D~~t~~v~~~~~~g--~~~~~v~fSpDG~--~l~~~-s--~dg~v~~~d~~t~~~~~~~--~i~~ 103 (432)
T d1qksa2 33 LFSVTLRDAGQIALIDGSTYEIKTVLDTG--YAVHISRLSASGR--YLFVI-G--RDGKVNMIDLWMKEPTTVA--EIKI 103 (432)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEEECS--SCEEEEEECTTSC--EEEEE-E--TTSEEEEEETTSSSCCEEE--EEEC
T ss_pred EEEEEEcCCCEEEEEECCCCcEEEEEeCC--CCeeEEEECCCCC--EEEEE-c--CCCCEEEEEeeCCCceEEE--EEec
Confidence 54454445689999999999964432222 1233455544332 33333 3 2357899999887654443 2222
Q ss_pred cccccCCCcccEEE------CCE-EEEeeeCCcEEEEEecCCCeeeccC-CCCcccc--ccCCCcccccceeeeccCCCe
Q 017381 192 MILSQSSHQEGVFY------KGS-LYFTTPEPFSIVRFDLENGIWETPN-DANDHMT--MMLPHELTFFRLVNDGEESNK 261 (372)
Q Consensus 192 ~~~~~~~~~~~v~~------~G~-~y~~~~~~~~i~~yD~~~~~w~~i~-~p~~~~~--~~~p~~~~~~~lv~e~~~~g~ 261 (372)
. ....++.. +|+ +|..+.....+..+|..+.+..... ..+.... .+.|... ...++.. -+|+
T Consensus 104 ~-----~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~s--~dg~ 175 (432)
T d1qksa2 104 G-----SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPR-VAAILAS--HYRP 175 (432)
T ss_dssp C-----SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCC-EEEEEEC--SSSS
T ss_pred C-----CCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCc-eeEEEEC--CCCC
Confidence 0 11122222 575 5666666678999999887654321 0000000 0001111 1112211 3565
Q ss_pred EEEEEeeecCCccceEEEEEEcCCCCEEEEEecChHHHHHhhhhccCCCceEEEE-eeCCEEEEEeecCCeEEEEECCCC
Q 017381 262 LYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCF-WHQGMICVCCYTWPEILYYNVARR 340 (372)
Q Consensus 262 L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~v~~yd~~~~ 340 (372)
.+++... ....+.+|.... .+-.++.+++.. ....-..+ ..+..+++.....+.+.+.|.+++
T Consensus 176 ~~~vs~~----~~~~i~~~d~~~-~~~~~~~~i~~g-----------~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~ 239 (432)
T d1qksa2 176 EFIVNVK----ETGKILLVDYTD-LNNLKTTEISAE-----------RFLHDGGLDGSHRYFITAANARNKLVVIDTKEG 239 (432)
T ss_dssp EEEEEET----TTTEEEEEETTC-SSEEEEEEEECC-----------SSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred EEEEEEc----cCCeEEEEEccC-CCcceEEEEccc-----------CccccceECCCCCEEEEeccccceEEEeecccc
Confidence 5554431 234555664422 222233333211 00111122 345567777766778888898887
Q ss_pred ceEE
Q 017381 341 TWHW 344 (372)
Q Consensus 341 ~w~~ 344 (372)
+...
T Consensus 240 ~~~~ 243 (432)
T d1qksa2 240 KLVA 243 (432)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 6654
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=85.39 E-value=8.1 Score=31.33 Aligned_cols=201 Identities=11% Similarity=0.082 Sum_probs=93.7
Q ss_pred ecCcEEEEecCCCceEEEEeccccceeccCCCC-CCCCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCCcccccc
Q 017381 108 SSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPT-YPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDI 186 (372)
Q Consensus 108 s~~Gll~~~~~~~~~~~v~NP~t~~~~~lP~~~-~~~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~~~~ 186 (372)
+-+|-.++.+..++.+.+||..+++......+. .......+.+.+.+ +.++.++......+.+++..+++-. .
T Consensus 67 sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~---~~l~~~~~~~~~~~~v~~~~~~~~~--~- 140 (311)
T d1nr0a1 67 SPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSES---KRIAAVGEGRERFGHVFLFDTGTSN--G- 140 (311)
T ss_dssp CTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTS---CEEEEEECCSSCSEEEEETTTCCBC--B-
T ss_pred eCCCCeEeccccCceEeeeeeeccccccccccccccCccccccccccc---ccccccccccccccccccccccccc--c-
Confidence 556744444445688999999887643211111 11112234443322 3344444333445677877665321 1
Q ss_pred CCCCccccccCCCcccEEE--CCEE-EEeeeCCcEEEEEecCCCeeeccCCCCccccccCCCcccccceeeeccCCCeEE
Q 017381 187 DGFPSMILSQSSHQEGVFY--KGSL-YFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLY 263 (372)
Q Consensus 187 ~~~p~~~~~~~~~~~~v~~--~G~~-y~~~~~~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~~~g~L~ 263 (372)
.+.. ....-..+.+ +|.. ...+.....|..||..+.+....... .......+... -+|+++
T Consensus 141 -~l~~----h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~---------~~~~i~~v~~~--p~~~~l 204 (311)
T d1nr0a1 141 -NLTG----QARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGE---------HTKFVHSVRYN--PDGSLF 204 (311)
T ss_dssp -CCCC----CSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECC---------CSSCEEEEEEC--TTSSEE
T ss_pred -cccc----cccccccccccccceeeeccccccccccccccccccccccccc---------ccccccccccC--cccccc
Confidence 1111 0011123333 3543 33344555688999987655432211 11111122211 367776
Q ss_pred EEEeeecCCccceEEEEEEcCCCCEEEEEecChHHHHHhhhhccCCCceEEEE--eeCCEEEEEeecCCeEEEEECCCCc
Q 017381 264 LIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCF--WHQGMICVCCYTWPEILYYNVARRT 341 (372)
Q Consensus 264 vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~v~~yd~~~~~ 341 (372)
+++.. ...+.+|.+... .++..+...... .. .....+.++ ..++..++.+...+.|.+||.++++
T Consensus 205 ~~~~~-----d~~v~~~d~~~~---~~~~~~~~~~~~-~~----~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~ 271 (311)
T d1nr0a1 205 ASTGG-----DGTIVLYNGVDG---TKTGVFEDDSLK-NV----AHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLK 271 (311)
T ss_dssp EEEET-----TSCEEEEETTTC---CEEEECBCTTSS-SC----SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred ccccc-----cccccccccccc---cccccccccccc-cc----cccccccccccCCCCCEEEEEeCCCeEEEEECCCCc
Confidence 66541 356889976432 233333211100 00 011223333 2344445555455679999999987
Q ss_pred eE
Q 017381 342 WH 343 (372)
Q Consensus 342 w~ 343 (372)
..
T Consensus 272 ~~ 273 (311)
T d1nr0a1 272 VE 273 (311)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=84.87 E-value=9 Score=31.40 Aligned_cols=202 Identities=10% Similarity=0.075 Sum_probs=100.6
Q ss_pred cCcEEEEecCCCceEEEEeccccceeccC-CCCCCCCceeEEEEeCCCCEEEEEEeec--CCCceEEEEECCCCCccccc
Q 017381 109 SKGLLCFSLPSSSSFLVCNLVTLSSRTID-FPTYPFDFELLTLVSTPSGYKIFMLFAK--SFPNYAFVYDSTDQSWSKFD 185 (372)
Q Consensus 109 ~~Gll~~~~~~~~~~~v~NP~t~~~~~lP-~~~~~~~~~~~~~~~~~~~ykvv~~~~~--~~~~~~~vy~s~~~~W~~~~ 185 (372)
.+|-|++.....++++.+||.+++..... +.. ....+++++..+ +++++... .....+..++..++......
T Consensus 49 ~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~--~~p~gla~~~dG---~l~va~~~~~~~~~~i~~~~~~~~~~~~~~ 123 (319)
T d2dg1a1 49 RQGQLFLLDVFEGNIFKINPETKEIKRPFVSHK--ANPAAIKIHKDG---RLFVCYLGDFKSTGGIFAATENGDNLQDII 123 (319)
T ss_dssp TTSCEEEEETTTCEEEEECTTTCCEEEEEECSS--SSEEEEEECTTS---CEEEEECTTSSSCCEEEEECTTSCSCEEEE
T ss_pred CCCCEEEEECCCCEEEEEECCCCeEEEEEeCCC--CCeeEEEECCCC---CEEEEecCCCccceeEEEEcCCCceeeeec
Confidence 34545555444578888999988754332 211 112344554332 34444321 22345667777766554332
Q ss_pred cCCCCccccccCCCcccEEE--CCEEEEeeeC------CcEEEEEecCCCeeeccCCCCccccccCCCcccccceeeecc
Q 017381 186 IDGFPSMILSQSSHQEGVFY--KGSLYFTTPE------PFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGE 257 (372)
Q Consensus 186 ~~~~p~~~~~~~~~~~~v~~--~G~~y~~~~~------~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~~~lv~e~~ 257 (372)
. .... ....+.+.+ +|.+|+.... ...+..+|+.......+... ...|.+ +...
T Consensus 124 ~-~~~~-----~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~-----~~~pnG-----ia~s-- 185 (319)
T d2dg1a1 124 E-DLST-----AYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN-----ISVANG-----IALS-- 185 (319)
T ss_dssp C-SSSS-----CCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE-----ESSEEE-----EEEC--
T ss_pred c-CCCc-----ccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeec-----cceeee-----eeec--
Confidence 1 1111 011122333 6888876432 12477777766555543211 002332 2212
Q ss_pred CCC-eEEEEEeeecCCccceEEEEEEcCCCC--EEEEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeecCCeEEE
Q 017381 258 ESN-KLYLIGGVGRNGISTTMKLWELGCGGN--WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILY 334 (372)
Q Consensus 258 ~~g-~L~vv~~~~~~~~~~~i~vw~l~~~~~--W~~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~ 334 (372)
-+| .||+... ....|..+.++.++. .......+.... .. ....-.++..++.||+.....+.|.+
T Consensus 186 ~dg~~lyvad~-----~~~~I~~~d~~~~g~~~~~~~~~~~~~~~-~~------~~PdGl~vD~~G~l~Va~~~~g~V~~ 253 (319)
T d2dg1a1 186 TDEKVLWVTET-----TANRLHRIALEDDGVTIQPFGATIPYYFT-GH------EGPDSCCIDSDDNLYVAMYGQGRVLV 253 (319)
T ss_dssp TTSSEEEEEEG-----GGTEEEEEEECTTSSSEEEEEEEEEEECC-SS------SEEEEEEEBTTCCEEEEEETTTEEEE
T ss_pred cccceEEEecc-----cCCceEEEEEcCCCceeccccceeeeccC-Cc------cceeeeeEcCCCCEEEEEcCCCEEEE
Confidence 355 4787754 235677777766554 333222211100 00 00122345456669999887889999
Q ss_pred EECCCCceEEC
Q 017381 335 YNVARRTWHWL 345 (372)
Q Consensus 335 yd~~~~~w~~v 345 (372)
||++-+...++
T Consensus 254 ~~p~G~~l~~i 264 (319)
T d2dg1a1 254 FNKRGYPIGQI 264 (319)
T ss_dssp ECTTSCEEEEE
T ss_pred ECCCCcEEEEE
Confidence 99876655555
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=83.95 E-value=8.3 Score=30.47 Aligned_cols=101 Identities=9% Similarity=0.051 Sum_probs=49.6
Q ss_pred CCceEEEEeccccceeccCCCCCCCCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCCccccccCCCCccccccCC
Q 017381 119 SSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQSS 198 (372)
Q Consensus 119 ~~~~~~v~NP~t~~~~~lP~~~~~~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~ 198 (372)
.++.+.+||..+++...+...........+.+.+. . +.++.++ ....+.+|+..++....... .... ...
T Consensus 156 ~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~-~--~~l~~~~--~d~~i~~~~~~~~~~~~~~~-~~~~----h~~ 225 (299)
T d1nr0a2 156 QDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNN-G--AFLVATD--QSRKVIPYSVANNFELAHTN-SWTF----HTA 225 (299)
T ss_dssp TTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTT-S--SEEEEEE--TTSCEEEEEGGGTTEESCCC-CCCC----CSS
T ss_pred ccccccccccccccccccccccccccccccccccc-c--ccccccc--cccccccccccccccccccc-cccc----ccc
Confidence 35788888887776544432211111223333322 2 2233332 23468899987765433220 1111 001
Q ss_pred CcccEEE--CCEEEEeeeCCcEEEEEecCCCee
Q 017381 199 HQEGVFY--KGSLYFTTPEPFSIVRFDLENGIW 229 (372)
Q Consensus 199 ~~~~v~~--~G~~y~~~~~~~~i~~yD~~~~~w 229 (372)
.-..+.+ +|...+.++....|..||+.+.+.
T Consensus 226 ~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~ 258 (299)
T d1nr0a2 226 KVACVSWSPDNVRLATGSLDNSVIVWNMNKPSD 258 (299)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTCTTS
T ss_pred ccccccccccccceEEEcCCCEEEEEECCCCCc
Confidence 1112222 566555566556799999876543
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=83.37 E-value=11 Score=31.20 Aligned_cols=143 Identities=9% Similarity=0.177 Sum_probs=75.5
Q ss_pred ceEEEEECCCCCccccccCCCCccccccCCCcccEEE--CCEEEEeeeCCcEEEEEecCCCeeeccCCCCccccccCCC-
Q 017381 169 NYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFY--KGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPH- 245 (372)
Q Consensus 169 ~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~--~G~~y~~~~~~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~- 245 (372)
..+.+|+..++.+.... .+.. +...-..+.+ +|.....++....+..+|+.+.++..... +..
T Consensus 29 ~~i~iw~~~~~~~~~~~--~l~g----H~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~--------~~~~ 94 (371)
T d1k8kc_ 29 HEVHIYEKSGNKWVQVH--ELKE----HNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLV--------ILRI 94 (371)
T ss_dssp SEEEEEEEETTEEEEEE--EEEC----CSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEE--------CCCC
T ss_pred CEEEEEECCCCCEEEEE--EecC----CCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccccc--------cccc
Confidence 57889999888887665 2211 1111122222 46655555555679999998888765321 111
Q ss_pred cccccceeeeccCCCeEEEEEeeecCCccceEEEEEEcCCCCEEEEEecChHHHHHhhhhccCCCceEEEE-e-eCCEEE
Q 017381 246 ELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCF-W-HQGMIC 323 (372)
Q Consensus 246 ~~~~~~lv~e~~~~g~L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~lp~~~~~~~~~~~~~~~~~~~~~-~-~~~~i~ 323 (372)
......+... -+|+.++++. ....+.+|.++....+......... ....+.++ . .++..+
T Consensus 95 ~~~v~~i~~~--p~~~~l~~~s-----~d~~i~i~~~~~~~~~~~~~~~~~~-----------~~~~v~~v~~~p~~~~l 156 (371)
T d1k8kc_ 95 NRAARCVRWA--PNEKKFAVGS-----GSRVISICYFEQENDWWVCKHIKKP-----------IRSTVLSLDWHPNSVLL 156 (371)
T ss_dssp SSCEEEEEEC--TTSSEEEEEE-----TTSSEEEEEEETTTTEEEEEEECTT-----------CCSCEEEEEECTTSSEE
T ss_pred cccccccccc--cccccceeec-----ccCcceeeeeecccccccccccccc-----------cccccccccccccccce
Confidence 1111112111 4677666654 1357899999876664333222111 01223333 2 234444
Q ss_pred EEeecCCeEEEEECCCCceE
Q 017381 324 VCCYTWPEILYYNVARRTWH 343 (372)
Q Consensus 324 ~~~~~~~~v~~yd~~~~~w~ 343 (372)
+.+...+.+.+||+..+...
T Consensus 157 ~s~s~D~~v~v~~~~~~~~~ 176 (371)
T d1k8kc_ 157 AAGSCDFKCRIFSAYIKEVE 176 (371)
T ss_dssp EEEETTSCEEEEECCCTTTS
T ss_pred eccccCcEEEEEeeccCccc
Confidence 54445567899998876543
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=81.53 E-value=11 Score=29.98 Aligned_cols=194 Identities=11% Similarity=0.127 Sum_probs=94.2
Q ss_pred ecCcEEEEecCCCceEEEEeccccceeccCCCCCC----CCceeEEEEeCCCCEEEEEEeecCCCceEEEEECCCCCccc
Q 017381 108 SSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYP----FDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSK 183 (372)
Q Consensus 108 s~~Gll~~~~~~~~~~~v~NP~t~~~~~lP~~~~~----~~~~~~~~~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~ 183 (372)
+.+|-|++......++.++|+........+..... .....++++..... .++.... ....+.+++.....++.
T Consensus 31 d~dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~--~~~~i~~~~~~g~~~~~ 107 (279)
T d1q7fa_ 31 NAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGD-IIVTERS--PTHQIQIYNQYGQFVRK 107 (279)
T ss_dssp CTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTE-EEEEECG--GGCEEEEECTTSCEEEE
T ss_pred cCCCCEEEEECCCCEEEEEeCCCCEEEEecccCCCcccccccccccccccccc-cceeccC--Cccccccccccccceee
Confidence 34676666554457899999874433344332211 11123444433222 2332221 22466777766555554
Q ss_pred cccCCCCccccccCCCcccEEE--CCEEEEeeeCCcEEEEEecCCCeeeccCCCCccccccCCCcccc-cceeeeccCCC
Q 017381 184 FDIDGFPSMILSQSSHQEGVFY--KGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTF-FRLVNDGEESN 260 (372)
Q Consensus 184 ~~~~~~p~~~~~~~~~~~~v~~--~G~~y~~~~~~~~i~~yD~~~~~w~~i~~p~~~~~~~~p~~~~~-~~lv~e~~~~g 260 (372)
... +. . ....++.+ +|.+|+.......+..||........+. .+..... ..+... -+|
T Consensus 108 ~~~---~~--~---~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~~~~g---------~~~~~~~~~~i~~d--~~g 168 (279)
T d1q7fa_ 108 FGA---TI--L---QHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFG---------CSKHLEFPNGVVVN--DKQ 168 (279)
T ss_dssp ECT---TT--C---SCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEE---------CTTTCSSEEEEEEC--SSS
T ss_pred cCC---Cc--c---cccceeccccCCcEEEEeeccceeeEeccCCceeeccc---------ccccccccceeeec--cce
Confidence 431 10 0 11223444 5788887766667888988755433322 1111111 123323 578
Q ss_pred eEEEEEeeecCCccceEEEEEEcCCCCEE-EEEecChHHHHHhhhhccCCCceEEEEeeCCEEEEEeec-CCeEEEEECC
Q 017381 261 KLYLIGGVGRNGISTTMKLWELGCGGNWI-EVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYT-WPEILYYNVA 338 (372)
Q Consensus 261 ~L~vv~~~~~~~~~~~i~vw~l~~~~~W~-~v~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~v~~yd~~ 338 (372)
.|+++... ... |+.++.++++. .+.. +.. + ....-.++..++.||+.... ...|.+||..
T Consensus 169 ~i~v~d~~-----~~~--V~~~d~~G~~~~~~g~-~g~-----~-----~~P~giavD~~G~i~Vad~~~~~~v~~f~~~ 230 (279)
T d1q7fa_ 169 EIFISDNR-----AHC--VKVFNYEGQYLRQIGG-EGI-----T-----NYPIGVGINSNGEILIADNHNNFNLTIFTQD 230 (279)
T ss_dssp EEEEEEGG-----GTE--EEEEETTCCEEEEESC-TTT-----S-----CSEEEEEECTTCCEEEEECSSSCEEEEECTT
T ss_pred eEEeeecc-----ccc--eeeeecCCceeeeecc-ccc-----c-----cCCcccccccCCeEEEEECCCCcEEEEECCC
Confidence 89888652 234 45556667733 2211 100 0 01112244445558887643 3458889864
Q ss_pred CCce
Q 017381 339 RRTW 342 (372)
Q Consensus 339 ~~~w 342 (372)
+++
T Consensus 231 -G~~ 233 (279)
T d1q7fa_ 231 -GQL 233 (279)
T ss_dssp -SCE
T ss_pred -CCE
Confidence 443
|