Citrus Sinensis ID: 017383

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370--
Protein Sequence
MAKHNRDQALDFQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGNSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEKYGKSGMKVNGHEVRAVRNTIQKTGVAEIQDLTISKKTENKNLRDESKTEGQRDGSGANATHISGLDKRNHRTKKAVLDASVQELATRATSRAVAEAAKNITPPKSAYEFEVSWRGFAGDHALQARLLKAISPNALPQIFKNALSASILIDIVKVVATFFT
Secondary Structure (PSIPRED)
ccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccccccccHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHcHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHcccccHHHHHHccccHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccHccHccccccccccccccccHccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccEEccccccccccccHcccHHHcccccccccccccccccccccccccccccccccccHHHHHHHccccccHHccccccccccEEEEccHHHHcccHHHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MAKHNRDQALDFQGFLNDLQDWDLSLNEKDKKMkhkasskdnlvssslksakkpspsgnsysrnydpvshissslmneestpdatsekelgnecfkqKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEKYgksgmkvngheVRAVRNTIQKTGVAEIQDLTiskktenknlrdesktegqrdgsganathisgldkrnhrtkKAVLDASVQELATRATSRAVAEAaknitppksayefevswrgfagdHALQARLLKaispnalpQIFKNALSASILIDIVKVVATFFT
Flexible Loop (DISEMBL)
MAKHNRDQALDFQGFLNDLQDWDLSLNEKDKKMkhkasskdnlvssslksakkpspsgnsysrnyDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGklkesiedsefalrlepqnqEIKKQLAEVKSLYEKEVFQKASKTLekygksgmkvnghevravrntiqktgvaeiqdltiskktenknlrdesktegqrdgsganathisgldkrnhrTKKAVLDASVQELATRATSRAvaeaaknitppksAYEFEVSWRGFAGDHALQARLLKAISPNALPQIFKNALSASILIDIVKVVATFFT
Low Complexity Region (SEG)
MAKHNRDQALDFQGFLNDLQDWDLSLNEkdkkmkhkasskdNLVssslksakkpspsGNSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEKYGKSGMKVNGHEVRAVRNTIQKTGVAEIQDLTISKKTENKNLRDESKTEGQRDGSGANATHISGLDKRNHRTKKAVLDASVQELATRATSRAVAEAAKNITPPKSAYEFEVSWRGFAGDHALQARLLKAISPNALPQIFKNALSASILIDIVKVVATFFT
Disordered region (IsUnstruct)
***********FQGFLNDLQDWD**********************************************************************CFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYS*********************************************************************VRAVRNTIQKTGVA******************************************************************************SAYEFEVSWRGFAGDHALQARLLKAISPNALPQIFKNALSASILIDIVKVVATFF*
Disordered Region (DISOPRED)
******DQALDFQGFLNDLQDWD****************************************************************KELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLA*****************************************************************************************************************************AYEFEVSWRGFAGDHALQARLLKAISPNALPQIFKNALSASILIDIVKVVATFFT
Disordered Region (DISEMBL)
MAKHNRDQALDFQGFLNDLQDWDLSLNEK*******************************YSRNYDPVSHIS*****************LGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEKYGKSGMKVNGHEVRAVRNTIQKTGVAEIQDLTISKKTENK*****************NATHISGLDKRNHRTKKAVLDASVQELATRATSRAVAEAAKNITPPKSAYEFEVSWRGFAGDHALQARLLKAISPNALPQIFKNALSASILIDIVKVVATFFT
Disordered Region (DISPRO)
MAKHNRDQALDFQGFLNDLQDWDLSLNEKDKKMKHK**********S********************************STPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKT*************************TGVAEIQD******************************************************A****SRAVAEAAKNITPPKSAYEFEVSWRGFAGDHALQARLLKAISPNALPQIFKNALSASILIDIVKVVATFFT
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAKHNRDQALDFQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGNSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEKYGKSGMKVNGHEVRAVRNTIQKTGVAEIQDLTISKKTENKNLRDESKTEGQRDGSGANATHISGLDKRNHRTKKAVLDASVQELATRATSRAVAEAAKNITPPKSAYEFEVSWRGFAGDHALQARLLKAISPNALPQIFKNALSASILIDIVKVVATFFT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	372	2.2.26 [Sep-21-2011]
Q9D706	660	RNA polymerase II-associa	yes	no	0.728	0.410	0.308	1e-28
Q68FQ7	659	RNA polymerase II-associa	yes	no	0.776	0.438	0.311	3e-27
Q5ZKQ3	665	RNA polymerase II-associa	yes	no	0.733	0.410	0.285	5e-27
Q9H6T3	665	RNA polymerase II-associa	no	no	0.760	0.425	0.306	1e-26
Q28IV3	657	RNA polymerase II-associa	yes	no	0.755	0.427	0.287	2e-25
Q6NU95	660	RNA polymerase II-associa	N/A	no	0.741	0.418	0.276	2e-22
Q9LVH5	589	Outer envelope protein 64	no	no	0.360	0.227	0.457	1e-20
Q9MUK5	593	Translocon at the outer m	N/A	no	0.301	0.188	0.424	3e-19
Q80ZX8	901	Sperm-associated antigen	no	no	0.327	0.135	0.427	2e-18
Q07617	926	Sperm-associated antigen	no	no	0.298	0.119	0.464	2e-17

>sp|Q9D706|RPAP3_MOUSE RNA polymerase II-associated protein 3 OS=Mus musculus GN=Rpap3 PE=1 SV=1

 Score =  127 bits (319), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 102/331 (30%), Positives = 163/331 (49%), Gaps = 60/331 (18%)

Query: 84  ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTE 142
           A +EK+LGN  FK+ K+++AI+CY+R IA   T A+  ANRAMAYLK++R++EAE DCT+
Sbjct: 284 AIAEKDLGNGFFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQ 343

Query: 143 ALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV-KSLYEK- 200
           A+ LD  Y KA++RR TAR  LGK+ E+ +D E  L LEP N++   +L+ + K L EK 
Sbjct: 344 AIVLDGSYSKAFARRGTARTFLGKINEAKQDFETVLLLEPGNKQAATELSRIKKELIEKG 403

Query: 201 ---EVFQKASKTLEKYGKSGMKVNGHEVRAVRN-------TIQKTGVAEIQDLTISKKTE 250
              +VF  +++              H V+AV N        ++K  + E  +L      E
Sbjct: 404 HWDDVFLDSTQ------------RHHVVKAVDNPPRGSPKALKKVFIEETGNL-----IE 446

Query: 251 NKNLRDESKTEGQRD------GSGANATHISGL-----DKRNHRTKK--AVLDASV---- 293
             +  D S T  + D      G+G       G+     D+   +  K  AV D S     
Sbjct: 447 TVDAPDSSATVPESDRATAAVGTGTKKNPSEGVSLPAGDRPRAKVLKIEAVSDTSAPQAQ 506

Query: 294 ------------QELATRATSRAVAEAAKNITP-PKSAYEFEVSWRGFAGDHALQARLLK 340
                       ++ + RA       AA  + P P ++++ E  +R       +  + +K
Sbjct: 507 VGVKQDARQPGSEKASVRAEQMPGQLAAAGLPPVPANSFQLESDFRQLRSSPEMLYQYVK 566

Query: 341 AISPNALPQIFKNALSASILIDIVKVVATFF 371
            I P+  P++F+  L   +   I+K++  F+
Sbjct: 567 NIEPSLYPKLFQKNLDPDVFNQIIKILHDFY 597

Forms an interface between the RNA polymerase II enzyme and chaperone/scaffolding protein, suggesting that it is required to connect RNA polymerase II to regulators of protein complex formation.
Mus musculus (taxid: 10090)

>sp|Q68FQ7|RPAP3_RAT RNA polymerase II-associated protein 3 OS=Rattus norvegicus GN=Rpap3 PE=2 SV=1

 Score =  123 bits (308), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 98/315 (31%), Positives = 162/315 (51%), Gaps = 26/315 (8%)

Query: 84  ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTE 142
           A +EK+LGN  FK+ K+++AI+CY+R IA   T A+  ANRAMAYLK+++++EAE DCT+
Sbjct: 282 AIAEKDLGNGFFKEGKYEQAIECYTRGIAADSTNALLPANRAMAYLKVQKYEEAERDCTQ 341

Query: 143 ALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV-KSLYEK- 200
           A+ LD  Y KA++RR TAR  LGK+ E+ +D E  L LEP N++   +L+ + K L EK 
Sbjct: 342 AILLDGSYSKAFARRGTARTFLGKINEAKQDFETVLLLEPGNKQAVTELSRIKKELIEKG 401

Query: 201 ---EVFQKASKTLEKYGKSGMKVNGHEVRAVRNTIQKTG-VAEIQDLTISKKTENKNLRD 256
              +VF  +++             G      +  I++TG + E  D   S  T  ++ R 
Sbjct: 402 RWDDVFLDSTQRHNVVKPVDSPHRGSPKALKKVFIEETGNLIESVDAPESSATVPESDRA 461

Query: 257 ESKTEGQRDGSGANATHISGLDKRNHRTKK--AVLDAS-----------VQELATRATSR 303
               +  R    +    +S  +    +  K  AV D+S           V++  +  TS 
Sbjct: 462 AVAVDTGRKKDFSQGDSVSSGETPRAKVLKIEAVGDSSAPQAQVDVKQGVRQSVSEKTSV 521

Query: 304 AVAE-----AAKNITP-PKSAYEFEVSWRGFAGDHALQARLLKAISPNALPQIFKNALSA 357
            VA+     AA  + P P ++++ E  +R       +  + +K I P+  P++F+  L  
Sbjct: 522 RVAQTPGQLAAVVLPPVPANSFQLESDFRQLRSSPEMLYQYVKKIEPSLYPKLFQKNLDP 581

Query: 358 SILIDIVKVVATFFT 372
            +   I+K++  F+ 
Sbjct: 582 DVFNQIIKILHDFYV 596

Forms an interface between the RNA polymerase II enzyme and chaperone/scaffolding protein, suggesting that it is required to connect RNA polymerase II to regulators of protein complex formation.

Rattus norvegicus (taxid: 10116)

>sp|Q5ZKQ3|RPAP3_CHICK RNA polymerase II-associated protein 3 OS=Gallus gallus GN=RPAP3 PE=2 SV=1

 Score =  122 bits (305), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 95/333 (28%), Positives = 162/333 (48%), Gaps = 60/333 (18%)

Query: 84  ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTE 142
           A +EK+LGN  FK+ K++ AI+CY+R IA   T A+  ANRAMAYLK+++++EAE+DCT+
Sbjct: 283 AVTEKDLGNGYFKEGKYEAAIECYTRGIAADGTNALLPANRAMAYLKIQKYEEAENDCTQ 342

Query: 143 ALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEV 202
           AL LD  Y KA++RR  AR  LGKLKE+++D E  L+LEP N++   +L ++++    E+
Sbjct: 343 ALLLDASYSKAFARRGAARVALGKLKEAMQDFEAVLKLEPGNKQAINELTKIRN----EL 398

Query: 203 FQKASKTLEKYGKSGMKVN--------GHEVRAVRNT--IQKTGVAEIQDLTIS------ 246
            +K     E+Y    +K +         H    +++T  +++  V E+ D  ++      
Sbjct: 399 AEKEQSCHEEYPAVLIKESEIKNIVKLTHNPLNLKSTKPLRRIAVEEVDDDVLNSDFSSS 458

Query: 247 -------------KKTEN---------------KNLRDESKTEGQRDGSGANATHISGLD 278
                        + TEN               K L+ E  T+       A A  +S   
Sbjct: 459 TSLVNNWKNSVNIETTENLDQDDQLTSMDIPKAKQLKIEEITDVSSPQLPAGAKGVS--- 515

Query: 279 KRNHRTKKAVLDASVQELATRATSRAVAEAAKNITPPKSAYEFEVSWRGFAGDHALQARL 338
                   +VL  S+ +   R    +   A+     P ++++ E  +R            
Sbjct: 516 --------SVLHPSMNKQIERENKASFRSASPVPAIPANSFQLESDFRKLKDCPEKMYLY 567

Query: 339 LKAISPNALPQIFKNALSASILIDIVKVVATFF 371
           LK I P+  P++F+ +L   +   I++++  F+
Sbjct: 568 LKQIEPSIYPKLFQKSLDPDLFNQILRILHDFY 600

May for an interface between the RNA polymerase II enzyme and chaperone/scaffolding protein.

Gallus gallus (taxid: 9031)

>sp|Q9H6T3|RPAP3_HUMAN RNA polymerase II-associated protein 3 OS=Homo sapiens GN=RPAP3 PE=1 SV=2

 Score =  121 bits (303), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 100/326 (30%), Positives = 162/326 (49%), Gaps = 43/326 (13%)

Query: 84  ATSEKELGNECFKQKKFKEAIDCYSRSIAL-SPTAVAYANRAMAYLKLRRFQEAEDDCTE 142
           A SEK+ GN  FK+ K++ AI+CY+R IA     A+  ANRAMAYLK+++++EAE DCT+
Sbjct: 282 AISEKDRGNGFFKEGKYERAIECYTRGIAADGANALLPANRAMAYLKIQKYEEAEKDCTQ 341

Query: 143 ALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV-KSLYEK- 200
           A+ LD  Y KA++RR TAR  LGKL E+ +D E  L LEP N++   +L+++ K L EK 
Sbjct: 342 AILLDGSYSKAFARRGTARTFLGKLNEAKQDFETVLLLEPGNKQAVTELSKIKKELIEKG 401

Query: 201 ---EVF------QKASKTLEKYGKSGMKVNGHEVRAVRNTIQKTG----VAEIQDLTISK 247
              +VF      Q   K ++     G      +V      I++TG      ++ D T + 
Sbjct: 402 HWDDVFLDSTQRQNVVKPIDNPPHPGSTKPLKKV-----IIEETGNLIQTIDVPDSTTAA 456

Query: 248 KTENK-----NLRDESKTEGQRDGSGANATHISGLDKRNHRTKKAVLD-------ASVQE 295
             EN      N+   + T  +++ S  +    S   +      + V D       AS+++
Sbjct: 457 APENNPINLANVIAATGTTSKKNSSQDDLFPTSDTPRAKVLKIEEVSDTSSLQPQASLKQ 516

Query: 296 LATRATSRAV--------AEAAKNITPPKSA--YEFEVSWRGFAGDHALQARLLKAISPN 345
              ++ S  +        A+ A  + PP  A  ++ E  +R       +  + LK I P+
Sbjct: 517 DVCQSYSEKMPIEIEQKPAQFATTVLPPIPANSFQLESDFRQLKSSPDMLYQYLKQIEPS 576

Query: 346 ALPQIFKNALSASILIDIVKVVATFF 371
             P++F+  L   +   IVK++  F+
Sbjct: 577 LYPKLFQKNLDPDVFNQIVKILHDFY 602

Forms an interface between the RNA polymerase II enzyme and chaperone/scaffolding protein, suggesting that it is required to connect RNA polymerase II to regulators of protein complex formation.

Homo sapiens (taxid: 9606)

>sp|Q28IV3|RPAP3_XENTR RNA polymerase II-associated protein 3 OS=Xenopus tropicalis GN=rpap3 PE=2 SV=1

 Score =  117 bits (292), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/310 (28%), Positives = 158/310 (50%), Gaps = 29/310 (9%)

Query: 84  ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTE 142
           A  +K+LGN  FK+ K++ AIDCYS+ +    T A+  ANRAMAYLK+++++EAE DCT 
Sbjct: 284 AIMQKDLGNAYFKEGKYEIAIDCYSQGMEADTTNALLPANRAMAYLKIQKYKEAETDCTL 343

Query: 143 ALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ----EIKKQLAEVKS-- 196
           A++LD  Y KA++RR TAR  LGK KE+ ED E  L+L+P N+    E++K   E++S  
Sbjct: 344 AISLDASYCKAFARRGTARIMLGKQKEAKEDFEMVLKLDPGNKQAVLELEKISRELRSNE 403

Query: 197 -------------LYEKEVFQKASKTLEKYGKSGMKVNGHEVRAVRNTIQKTGVAEIQDL 243
                          EK   Q+++K L +     ++  G  V +  +++ ++   +   +
Sbjct: 404 KDTKGNKERKLINAVEKLPHQRSTKPLRRM---VIEEVGGPVESCISSLNESNHGKADSM 460

Query: 244 TISKKTENKNLRDESKTEGQRDGSGANATHISGL-DKRNHRTKKAVLDASVQELATRATS 302
            +  K + ++L +E       D   A    I  + D        +  + SV + +     
Sbjct: 461 DLITKADKQDLNEEQNFCSLPDVPSAKVPKIEEISDTYGSCEPSSGEEHSVSQPSPPKIE 520

Query: 303 RAVAEAAKNI-----TPPKSAYEFEVSWRGFAGDHALQARLLKAISPNALPQIFKNALSA 357
           + V   ++++       P ++++ E  +R   G+  L  R LK I P+   ++F+ AL  
Sbjct: 521 KVVTTFSESLNIGIPVVPTNSFQLESDFRRLKGNPDLLYRYLKQIEPSFYGKLFQKALDP 580

Query: 358 SILIDIVKVV 367
            +  +I+ ++
Sbjct: 581 DLFSEILTIL 590

May for an interface between the RNA polymerase II enzyme and chaperone/scaffolding protein.

Xenopus tropicalis (taxid: 8364)

>sp|Q6NU95|RPAP3_XENLA RNA polymerase II-associated protein 3 OS=Xenopus laevis GN=rpap3 PE=2 SV=1

 Score =  107 bits (266), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 90/326 (27%), Positives = 156/326 (47%), Gaps = 50/326 (15%)

Query: 84  ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTE 142
           A  +K+LGN  FK+ K++ AI+CYS+ +    T A+  ANRAMAYLK+++++EAE DCT 
Sbjct: 284 AIMQKDLGNAYFKEGKYEIAIECYSQGMEADNTNALLPANRAMAYLKIQKYKEAEADCTL 343

Query: 143 ALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEV 202
           A++LD  Y KA++RR TA   LGK KE+ ED E  L+L+P N++   +LA++        
Sbjct: 344 AISLDASYCKAFARRGTASIMLGKQKEAKEDFEMVLKLDPGNKQAVLELAKI-------- 395

Query: 203 FQKASKTLEKYGKSGMKVNGHEVRAVRNTIQKT------------------GVAEIQDLT 244
             +  +++EK  ++G K +    R + NT++K                   G AEI + +
Sbjct: 396 -SQELRSIEK-DRNGNKDSNQ--RKLINTVEKLPHLRSTKPLRRMVIEEVGGPAEIFNTS 451

Query: 245 ISKKTENK----------NLRDESKTEGQRDGSGANATHISGLDKRNHRTKKAVLDASVQ 294
           + +    K          N +D ++ +   +     +  I  +++ +             
Sbjct: 452 LKETNHRKADSVDLTAETNTQDLNQEQNICNSPDVPSPKIPKIEEISDTPGSCEPTTGED 511

Query: 295 ELATRATSRAVAEAAK------NITPP---KSAYEFEVSWRGFAGDHALQARLLKAISPN 345
            L +R +   + +         NI  P    ++++ E  +R   G+  L    LK I P 
Sbjct: 512 YLTSRPSPPKIEKVVSTFSESLNIGIPAVPTNSFQLESDFRRLKGNPDLLYVYLKQIEPT 571

Query: 346 ALPQIFKNALSASILIDIVKVVATFF 371
              ++FK AL   +  DI+ ++   F
Sbjct: 572 LYGKLFKKALDPDLFSDILTILREQF 597

May for an interface between the RNA polymerase II enzyme and chaperone/scaffolding protein.

Xenopus laevis (taxid: 8355)

>sp|Q9LVH5|OE64C_ARATH Outer envelope protein 64, chloroplastic OS=Arabidopsis thaliana GN=OEP64 PE=1 SV=1

 Score =  100 bits (250), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/140 (45%), Positives = 86/140 (61%), Gaps = 6/140 (4%)

Query: 48  LKSAKKPSPSGNSYSRNY-DPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDC 106
           L + +   PS   YS    DP S    ++  EES   A   KE GN+ FK+K +++AI  
Sbjct: 441 LDTVQTMYPSLQEYSSIVTDPKSS-KKAITKEES---AEIAKEKGNQAFKEKLWQKAIGL 496

Query: 107 YSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG 165
           YS +I LS   A  Y+NRA AYL+L  F +AE+DCT+A+ LD + +KAY RR TAR+ LG
Sbjct: 497 YSEAIKLSDNNATYYSNRAAAYLELGGFLQAEEDCTKAITLDKKNVKAYLRRGTAREMLG 556

Query: 166 KLKESIEDSEFALRLEPQNQ 185
             K +IED  +AL LEP N+
Sbjct: 557 DCKGAIEDFRYALVLEPNNK 576

Chaperone receptor mediating Hsp90-dependent protein targeting to chloroplasts. Bi-functional preprotein receptor acting on both sides of the membrane. Not essential for an efficient import of pre-proteins into plastids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9MUK5|TOC64_PEA Translocon at the outer membrane of chloroplasts 64 OS=Pisum sativum GN=TOC64 PE=1 SV=1

 Score = 96.7 bits (239), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 48/113 (42%), Positives = 75/113 (66%), Gaps = 1/113 (0%)

Query: 88  KELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNL 146
           KE GN+ +K K++++AI  Y+ +I L    A  Y+NRA AYL+L  + +AE+DCT A++ 
Sbjct: 481 KEKGNQAYKDKQWQKAIGFYTEAIKLCGNNATYYSNRAQAYLELGSYLQAEEDCTTAISF 540

Query: 147 DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYE 199
           D + +KAY RR TAR+ LG  KE+I+D ++AL LEP N+        ++ L++
Sbjct: 541 DKKNVKAYFRRGTAREMLGYYKEAIDDFKYALVLEPTNKRAASSAERLRKLFQ 593

Chaperone receptor mediating Hsp90-dependent protein targeting to chloroplasts. Bi-functional preprotein receptor acting on both sides of the membrane.

Pisum sativum (taxid: 3888)

>sp|Q80ZX8|SPAG1_MOUSE Sperm-associated antigen 1 OS=Mus musculus GN=Spag1 PE=1 SV=1

 Score = 93.2 bits (230), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/124 (42%), Positives = 78/124 (62%)

Query: 72  SSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLR 131
           ++ L  +E +  A  EK  GNE F    ++EA+  Y+RS++  PTA+AY NRA A +KL+
Sbjct: 201 TAGLTEKEKSFLANREKGKGNEAFYSGDYEEAVMYYTRSLSALPTAIAYNNRAQAEIKLQ 260

Query: 132 RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQL 191
           R+  A +DC +AL LD   +KA  RRAT  K   KL+E+++D    L++EP N   KK L
Sbjct: 261 RWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAKKTL 320

Query: 192 AEVK 195
           +EV+
Sbjct: 321 SEVE 324

Plays a role in fertilization. Binds GTP and has GTPase activity.

Mus musculus (taxid: 10090)

>sp|Q07617|SPAG1_HUMAN Sperm-associated antigen 1 OS=Homo sapiens GN=SPAG1 PE=1 SV=3

 Score = 90.5 bits (223), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/112 (46%), Positives = 68/112 (60%)

Query: 84  ATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEA 143
           AT EKE GNE F    ++EA+  Y+RSI+  PT VAY NRA A +KL+ +  A  DC + 
Sbjct: 209 ATREKEKGNEAFNSGDYEEAVMYYTRSISALPTVVAYNNRAQAEIKLQNWNSAFQDCEKV 268

Query: 144 LNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVK 195
           L L+   +KA  RRAT  K   KL+E+ ED    L +EP N   KK L+EV+
Sbjct: 269 LELEPGNVKALLRRATTYKHQNKLREATEDLSKVLDVEPDNDLAKKTLSEVE 320

Plays a role in fertilization. Binds GTP and has GTPase activity.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	372
359487668	474	PREDICTED: RNA polymerase II-associated	0.986	0.774	0.630	1e-129
296089779	1097	unnamed protein product [Vitis vinifera]	0.986	0.334	0.630	1e-129
356575341	455	PREDICTED: RNA polymerase II-associated	0.973	0.795	0.564	1e-113
363808038	454	uncharacterized protein LOC100784528 [Gl	0.962	0.788	0.562	1e-112
224123972	434	predicted protein [Populus trichocarpa]	0.903	0.774	0.598	1e-108
224122920	471	predicted protein [Populus trichocarpa]	0.967	0.764	0.575	1e-107
449454004	458	PREDICTED: RNA polymerase II-associated	0.956	0.777	0.555	1e-106
356517104	474	PREDICTED: LOW QUALITY PROTEIN: RNA poly	0.841	0.660	0.587	1e-105
42562786	476	tetratricopeptide repeat domain-containi	0.978	0.764	0.492	2e-96
297853532	472	hypothetical protein ARALYDRAFT_474807 [	0.954	0.752	0.501	2e-95

>gi|359487668|ref|XP_002277910.2| PREDICTED: RNA polymerase II-associated protein 3-like [Vitis vinifera]

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 256/406 (63%), Positives = 293/406 (72%), Gaps = 39/406 (9%)

Query: 2   AKHNRDQALDFQGFLNDLQDWDLSLNEKDKKMKHKASSKD-----NLVSSSLKSAKKPSP 56
           +KH RDQALDFQGFL DLQDW+LSL EKDKKMK +A  KD       V  S K +  P  
Sbjct: 7   SKHARDQALDFQGFLTDLQDWELSLKEKDKKMKAQAEEKDVPTARGNVKHSSKLSSSPGV 66

Query: 57  S---GNS--------YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAID 105
           S   G S        YSRN+D +S ISSS M EES PDA SEKELGNE FKQ+KFKEAID
Sbjct: 67  SLRLGQSRSDTRQHEYSRNHDAISRISSSFMTEESLPDAASEKELGNEYFKQRKFKEAID 126

Query: 106 CYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG 165
           CYSRSIAL PTAVAYANRAMAY+K++RF+EAEDDC EALNLDDRYIKAYSRRATARKELG
Sbjct: 127 CYSRSIALLPTAVAYANRAMAYIKIKRFREAEDDCMEALNLDDRYIKAYSRRATARKELG 186

Query: 166 KLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKAS-------KTLEKYGKSGM 218
           K KE+ ED+EFALRLEPQNQEIKKQ AE KSLYEKE+ QKAS       + L+K GKS +
Sbjct: 187 KFKEATEDAEFALRLEPQNQEIKKQYAEAKSLYEKEILQKASGALKSSVQGLQKVGKSVV 246

Query: 219 KVNG--HEVRAVRNTIQKTGVAEIQDL--------TISKKTENKNLRDESKTEGQRDGSG 268
           +VN     VR++ ++ Q  G A IQD         T  ++TENK   + SK  G  +   
Sbjct: 247 EVNADTQGVRSISSSSQGAGEAAIQDRFMVPANTSTSMEETENKGTGNRSKENGYLE--- 303

Query: 269 ANATHISGLD--KRNHRTKKAVLDASVQELATRATSRAVAEAAKNITPPKSAYEFEVSWR 326
            NA   SGL+    NH+T +  + +S+QELA+RA SRA+ EAAKNIT P SAY+FEVSWR
Sbjct: 304 -NAVQNSGLEDVMSNHKTGQREMKSSLQELASRAASRAMVEAAKNITAPNSAYQFEVSWR 362

Query: 327 GFAGDHALQARLLKAISPNALPQIFKNALSASILIDIVKVVATFFT 372
           G  GDHALQA  LKAISPNALPQIFKNALSA ILIDI+K +ATFF 
Sbjct: 363 GLLGDHALQASYLKAISPNALPQIFKNALSAPILIDIIKCIATFFV 408

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089779|emb|CBI39598.3| unnamed protein product [Vitis vinifera]

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 256/406 (63%), Positives = 293/406 (72%), Gaps = 39/406 (9%)

Query: 2    AKHNRDQALDFQGFLNDLQDWDLSLNEKDKKMKHKASSKD-----NLVSSSLKSAKKPSP 56
            +KH RDQALDFQGFL DLQDW+LSL EKDKKMK +A  KD       V  S K +  P  
Sbjct: 630  SKHARDQALDFQGFLTDLQDWELSLKEKDKKMKAQAEEKDVPTARGNVKHSSKLSSSPGV 689

Query: 57   S---GNS--------YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAID 105
            S   G S        YSRN+D +S ISSS M EES PDA SEKELGNE FKQ+KFKEAID
Sbjct: 690  SLRLGQSRSDTRQHEYSRNHDAISRISSSFMTEESLPDAASEKELGNEYFKQRKFKEAID 749

Query: 106  CYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG 165
            CYSRSIAL PTAVAYANRAMAY+K++RF+EAEDDC EALNLDDRYIKAYSRRATARKELG
Sbjct: 750  CYSRSIALLPTAVAYANRAMAYIKIKRFREAEDDCMEALNLDDRYIKAYSRRATARKELG 809

Query: 166  KLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKAS-------KTLEKYGKSGM 218
            K KE+ ED+EFALRLEPQNQEIKKQ AE KSLYEKE+ QKAS       + L+K GKS +
Sbjct: 810  KFKEATEDAEFALRLEPQNQEIKKQYAEAKSLYEKEILQKASGALKSSVQGLQKVGKSVV 869

Query: 219  KVNG--HEVRAVRNTIQKTGVAEIQDL--------TISKKTENKNLRDESKTEGQRDGSG 268
            +VN     VR++ ++ Q  G A IQD         T  ++TENK   + SK  G  +   
Sbjct: 870  EVNADTQGVRSISSSSQGAGEAAIQDRFMVPANTSTSMEETENKGTGNRSKENGYLE--- 926

Query: 269  ANATHISGLDK--RNHRTKKAVLDASVQELATRATSRAVAEAAKNITPPKSAYEFEVSWR 326
             NA   SGL+    NH+T +  + +S+QELA+RA SRA+ EAAKNIT P SAY+FEVSWR
Sbjct: 927  -NAVQNSGLEDVMSNHKTGQREMKSSLQELASRAASRAMVEAAKNITAPNSAYQFEVSWR 985

Query: 327  GFAGDHALQARLLKAISPNALPQIFKNALSASILIDIVKVVATFFT 372
            G  GDHALQA  LKAISPNALPQIFKNALSA ILIDI+K +ATFF 
Sbjct: 986  GLLGDHALQASYLKAISPNALPQIFKNALSAPILIDIIKCIATFFV 1031

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575341|ref|XP_003555800.1| PREDICTED: RNA polymerase II-associated protein 3-like [Glycine max]

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 220/390 (56%), Positives = 279/390 (71%), Gaps = 28/390 (7%)

Query: 10  LDFQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGNSYSRN----Y 65
           +DF GFLNDLQDW+ S  +K +  K  ASS     S  ++ A K        +RN    Y
Sbjct: 1   MDFHGFLNDLQDWEFSRKDKARPQKENASSSRITGSVGVEKASKGDTISFDNARNSPGQY 60

Query: 66  D--PVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANR 123
           D   ++H+ SS + E+  PDA SEK+LGNE FKQKKFKEA DCYSRSIALSPTAVAYANR
Sbjct: 61  DLSRINHLHSSFVPED-VPDAASEKDLGNEFFKQKKFKEARDCYSRSIALSPTAVAYANR 119

Query: 124 AMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQ 183
           AMA +KLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGK+KES++D+EFALRLEP 
Sbjct: 120 AMANIKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKIKESMDDAEFALRLEPN 179

Query: 184 NQEIKKQLAEVKSLYEKEVFQKASKTL-------EKYGKSGMKVNGHEVRAVRNTIQKTG 236
           NQEIKKQ A+ KS YEK++ QKAS  L       +K GKS  KVNG  +  +  + QK+G
Sbjct: 180 NQEIKKQYADAKSFYEKDILQKASGVLRSTVQGTQKVGKSEEKVNGDSIHPISRSTQKSG 239

Query: 237 VAE-------------IQDLTISKKTENKNLRDESKTEGQ-RDGSGANATHISGLDKRNH 282
           +AE             +++  +++  + + ++  S  + Q  DGS    +  + L++RNH
Sbjct: 240 LAEVHHHKKDNKRQILVKESLLTEDVDGREIKARSWPQSQGDDGSKGGLSASNSLEQRNH 299

Query: 283 RTKKAVLDASVQELATRATSRAVAEAAKNITPPKSAYEFEVSWRGFAGDHALQARLLKAI 342
           R  K  + ASVQ+LA+RA SRA++EAAKN+TPP +AY+FEVSWR F+GD ALQARLLKAI
Sbjct: 300 RITKPEMKASVQQLASRAASRAMSEAAKNVTPPTTAYQFEVSWRAFSGDLALQARLLKAI 359

Query: 343 SPNALPQIFKNALSASILIDIVKVVATFFT 372
           SP+ LP+IFKNALS++ILI+I+K +A+ FT
Sbjct: 360 SPHELPKIFKNALSSTILIEIIKCLASLFT 389

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363808038|ref|NP_001242466.1| uncharacterized protein LOC100784528 [Glycine max] gi|255641877|gb|ACU21207.1| unknown [Glycine max]

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 221/393 (56%), Positives = 280/393 (71%), Gaps = 35/393 (8%)

Query: 10  LDFQGFLNDLQDWDLSLNEKDKKMKH---------KASSKDNLVSSSLKSAKKPSPSGNS 60
           +DFQGFLNDLQDW+LS  +K +  K          KAS  D +   S   A+  SP    
Sbjct: 1   MDFQGFLNDLQDWELSRKDKTRAQKENLTGSVGVEKASKGDTI---SFDRARN-SPGQYD 56

Query: 61  YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAY 120
            SR  DP + + SS + E+  PDA SEK+LGNE FKQKKFKEA DCYSRSIALSPTAVAY
Sbjct: 57  LSRINDPFNRVHSSFVPED-VPDAVSEKDLGNEFFKQKKFKEARDCYSRSIALSPTAVAY 115

Query: 121 ANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRL 180
           ANRAMA +KLRRFQEAEDDCTEALNLDDRYIKAYSR ATARKELGK+KES++D+ FALRL
Sbjct: 116 ANRAMANIKLRRFQEAEDDCTEALNLDDRYIKAYSRGATARKELGKIKESMDDAAFALRL 175

Query: 181 EPQNQEIKKQLAEVKSLYEKEVFQKASKTL-------EKYGKSGMKVNGHEVRAVRNTIQ 233
           EP NQEIKKQ A+ KSLYEK++ QKAS  L       +K  KS  K+NG  ++ + ++ Q
Sbjct: 176 EPNNQEIKKQYADAKSLYEKDILQKASGALRSTVQGTQKSQKSEEKINGDSIQPISHSTQ 235

Query: 234 KTGVAE-------------IQDLTISKKTENKNLRDESKTEGQ-RDGSGANATHISGLDK 279
           K+G+AE             +++  +++  +++  +  S+ + Q  DGS    +  + L++
Sbjct: 236 KSGLAEVNHHKKDNEQQILVKESLLTEDVDSRETKARSRPQSQGGDGSKEGLSASNSLEQ 295

Query: 280 RNHRTKKAVLDASVQELATRATSRAVAEAAKNITPPKSAYEFEVSWRGFAGDHALQARLL 339
           RNH   K  + ASVQ+LA+RA SR VAEAAKN+TPP +AY+FEVSWR F+GD ALQARLL
Sbjct: 296 RNHSITKLEMKASVQQLASRAASRVVAEAAKNVTPPTTAYQFEVSWRAFSGDLALQARLL 355

Query: 340 KAISPNALPQIFKNALSASILIDIVKVVATFFT 372
           KAISP+ LP+IFKNALS++ILI+I+K +A+FFT
Sbjct: 356 KAISPHELPKIFKNALSSAILIEIIKCLASFFT 388

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123972|ref|XP_002330255.1| predicted protein [Populus trichocarpa] gi|222871711|gb|EEF08842.1| predicted protein [Populus trichocarpa]

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 237/396 (59%), Positives = 276/396 (69%), Gaps = 60/396 (15%)

Query: 2   AKHNRDQALDFQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGNS- 60
            KH RDQALDFQGFLNDLQDW+L L + DKKMK K+ + D  +    +S  K S + +S 
Sbjct: 6   GKHGRDQALDFQGFLNDLQDWEL-LKDTDKKMKKKSRASDVKIGEDGRSKGKTSAADSSR 64

Query: 61  -------YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIAL 113
                  YSRN+  ++ +SSS   +E T DAT+EKELGNE FKQKKF EAI+CYSRSIAL
Sbjct: 65  SGSGQYEYSRNFGAINRLSSSFTTDEITVDATTEKELGNEYFKQKKFNEAIECYSRSIAL 124

Query: 114 SPTAVAYANRAMAYLKLRR----FQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKE 169
           SPTAVAYANRAMAYLK++R    F+EAEDDCTEALNLDDRYIKAYSRRATARKELGKLKE
Sbjct: 125 SPTAVAYANRAMAYLKIKRQFFLFREAEDDCTEALNLDDRYIKAYSRRATARKELGKLKE 184

Query: 170 SIEDSEFALRLEPQNQEIKKQLAEVKSLYEK-------EVFQKASKTL-------EKYGK 215
           SIEDSEFAL+LEP NQEIKKQ AEVKSLYEK       E+ QKAS TL       ++ G+
Sbjct: 185 SIEDSEFALKLEPNNQEIKKQYAEVKSLYEKASDYLMLEILQKASGTLRSSLQGTQQGGR 244

Query: 216 SGMKVNGHEVRAVRNTIQKTGVAEIQDLTISKKTENKNLRDESKTEGQRDGSGANATHIS 275
           S   VNGH V  V    QKTGV+       + K +N                        
Sbjct: 245 SEASVNGHAVHPVSIATQKTGVS-------ASKKDNT----------------------- 274

Query: 276 GLDKRNHRTKKAVLDASVQELATRATSRAVAEAAKNITPPKSAYEFEVSWRGFAGDHALQ 335
              K+N+RT++  L  SV ELA++A SRA+AEAAKNITPP SAY+FEVSW+GF+GD ALQ
Sbjct: 275 ---KKNNRTRRQELKTSVIELASQAASRAMAEAAKNITPPNSAYQFEVSWQGFSGDRALQ 331

Query: 336 ARLLKAISPNALPQIFKNALSASILIDIVKVVATFF 371
           A LLK  SP+ALPQIFKNALS  ILIDI+K VA+FF
Sbjct: 332 AHLLKVTSPSALPQIFKNALSVPILIDIIKCVASFF 367

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122920|ref|XP_002318949.1| predicted protein [Populus trichocarpa] gi|222857325|gb|EEE94872.1| predicted protein [Populus trichocarpa]

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 236/410 (57%), Positives = 285/410 (69%), Gaps = 50/410 (12%)

Query: 2   AKHNRDQALDFQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSG-NS 60
            KH RDQALDFQGFLNDLQDW+L L + DKKMK K++ K + V  S       S SG   
Sbjct: 6   GKHGRDQALDFQGFLNDLQDWEL-LKDTDKKMKKKSTGKTSAVDFS-------SSSGMYD 57

Query: 61  YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAY 120
           ++RN+D ++ +S+S   +EST DAT+EKELGNE FKQKK+KEAI+CYSRSIALSPTAVAY
Sbjct: 58  HARNFDAINRLSNSFAIDESTVDATTEKELGNEYFKQKKYKEAIECYSRSIALSPTAVAY 117

Query: 121 ANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRL 180
           ANRAMAYLK++R  +AEDDCTEALNLDDRYIKAYSRRAT RKELGKLKESIEDSEFAL+L
Sbjct: 118 ANRAMAYLKIKR--QAEDDCTEALNLDDRYIKAYSRRATTRKELGKLKESIEDSEFALKL 175

Query: 181 EPQNQEIKKQLAEVKSLYEKE------------------VFQKASKTL-------EKYGK 215
           EP NQEIKKQ AEVKSLYEK                      KAS++L       +K G+
Sbjct: 176 EPNNQEIKKQYAEVKSLYEKASDSTICCYSGCYISLLQFFVTKASESLRSSLQGAQKGGR 235

Query: 216 SGMKVNGHEVRAVRNTIQKTGVAEIQ---------DLTISKKTENKNLRDESKTEGQR-D 265
           S   VNGH V  V N  Q+TG +  Q         D  + K    + ++++S   G R D
Sbjct: 236 SEASVNGHAVHPVSNVTQRTGASASQKDKAKENDGDGVVKKSVYVEEIKNKSTGAGSRSD 295

Query: 266 GSGANATHISGLDKRN----HRTKKAVLDASVQELATRATSRAVAEAAKNITPPKSAYEF 321
           G   N +  + +   N      T +  L ASV+ELA++A SRA+AEAAKNITPP SAY+F
Sbjct: 296 GQLGNDSRANAIPSSNAESIQVTGRQELKASVKELASQAASRAMAEAAKNITPPNSAYQF 355

Query: 322 EVSWRGFAGDHALQARLLKAISPNALPQIFKNALSASILIDIVKVVATFF 371
           EVSWRGF+GD ALQA LLK ++P+ALPQIFKNALS +ILIDI+K V++FF
Sbjct: 356 EVSWRGFSGDRALQAHLLKVVTPSALPQIFKNALSVTILIDIIKCVSSFF 405

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454004|ref|XP_004144746.1| PREDICTED: RNA polymerase II-associated protein 3-like [Cucumis sativus] gi|449517788|ref|XP_004165926.1| PREDICTED: RNA polymerase II-associated protein 3-like [Cucumis sativus]

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 222/400 (55%), Positives = 269/400 (67%), Gaps = 44/400 (11%)

Query: 2   AKHNRDQALDFQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGNSY 61
           AKH RDQ LDFQGFLNDLQDW++S   KDKK+K +A  K+       + A     S   Y
Sbjct: 6   AKHGRDQLLDFQGFLNDLQDWEVSFKGKDKKLKPQAIGKEKEDRRQTEKA-----SAADY 60

Query: 62  SRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYA 121
            + YD V+ +S +   E S  DA SEKE GNE FKQKKFKEAIDCYSRSIALSPTAVA+A
Sbjct: 61  MKQYDAVNRLSRNFQTEGSFVDAASEKEQGNEYFKQKKFKEAIDCYSRSIALSPTAVAFA 120

Query: 122 NRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLE 181
           NRAMAYLK+RRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGK KE++ED+EFA RLE
Sbjct: 121 NRAMAYLKIRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLE 180

Query: 182 PQNQEIKKQLAEVKSLYEKEVFQKAS----------KTLEKYGKSGMKVNGHEVRAVRNT 231
           P NQEIKKQ A++++   K + +KAS          KTL+K   S  K+   ++  V ++
Sbjct: 181 PNNQEIKKQHADLRAFVGKAILEKASGASRSSTKNKKTLKK-SDSDAKI--QDIPPVSSS 237

Query: 232 IQKTGVAEIQDLTISKKTENKNLRDESKT-----EGQRDGSGANAT-------------- 272
             +TG+     L   ++ E     +  KT     E +   SGA  T              
Sbjct: 238 TSRTGL-----LAARERVEENGGGNAVKTSARLEESEDTSSGAEITSKKVATNGFHKDSS 292

Query: 273 -HISGLDKRNHRTKKAVLDASVQELATRATSRAVAEAAKNITPPKSAYEFEVSWRGFAGD 331
            ++S L+ R+H  +K  L ASV ELA++A SR++ EAAKNI  P +AY+FEVSWRGF+GD
Sbjct: 293 SYLSALE-RDHLPRKQELKASVYELASQAASRSMVEAAKNIIAPTTAYQFEVSWRGFSGD 351

Query: 332 HALQARLLKAISPNALPQIFKNALSASILIDIVKVVATFF 371
            ALQARLLK ISP  LPQIFK+AL+A ILIDIVK VATFF
Sbjct: 352 QALQARLLKTISPAKLPQIFKDALTAPILIDIVKCVATFF 391

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517104|ref|XP_003527230.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase II-associated protein 3-like [Glycine max]

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 199/339 (58%), Positives = 255/339 (75%), Gaps = 26/339 (7%)

Query: 55  SPSGNSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALS 114
           SP     SR    ++H+ SS + E+  PDA SEK+LGNE FKQKKFKEA DCYSRSIALS
Sbjct: 75  SPGQYDLSR----INHLHSSFVPED-VPDAASEKDLGNEFFKQKKFKEARDCYSRSIALS 129

Query: 115 PTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDS 174
           PTAVAYANRAMA +KLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGK+KES++D+
Sbjct: 130 PTAVAYANRAMANIKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKIKESMDDA 189

Query: 175 EFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTL-------EKYGKSGMKVNGHEVRA 227
           EFALRLEP NQEIKKQ A+ KS YEK++ QKAS  L       +K GKS  KVNG  +  
Sbjct: 190 EFALRLEPNNQEIKKQYADAKSFYEKDILQKASGVLRSTVQGTQKVGKSEEKVNGDSIHP 249

Query: 228 VRNTIQKTGVAE-------------IQDLTISKKTENKNLRDESKTEGQ-RDGSGANATH 273
           + ++ QK+G+AE             +++  +++  +++ ++  S+ + Q  DGS    + 
Sbjct: 250 ISHSTQKSGLAEVHHHKKDNERKILVKESLLTEDVDSREIKARSRPQSQGDDGSKGGLSA 309

Query: 274 ISGLDKRNHRTKKAVLDASVQELATRATSRAVAEAAKNITPPKSAYEFEVSWRGFAGDHA 333
            + L++RNHR  K  + ASV++LA+RA SRA++EAAKN+TPP +AY+FEVSWR F+GD A
Sbjct: 310 SNSLEQRNHRITKPEMKASVEQLASRAASRAMSEAAKNVTPPTTAYQFEVSWRAFSGDLA 369

Query: 334 LQARLLKAISPNALPQIFKNALSASILIDIVKVVATFFT 372
           LQARLLKAISP+ LP+IFKNALS++ILI+I+K +A+ FT
Sbjct: 370 LQARLLKAISPHXLPKIFKNALSSTILIEIIKCLASLFT 408

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42562786|ref|NP_176039.2| tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] gi|53828529|gb|AAU94374.1| At1g56440 [Arabidopsis thaliana] gi|59958350|gb|AAX12885.1| At1g56440 [Arabidopsis thaliana] gi|110743110|dbj|BAE99447.1| hypothetical protein [Arabidopsis thaliana] gi|332195274|gb|AEE33395.1| tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana]

 Score =  358 bits (920), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 203/412 (49%), Positives = 274/412 (66%), Gaps = 48/412 (11%)

Query: 2   AKHNRDQALDFQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-S 60
           +KH RDQ  DFQGF NDLQDW+LSL +KDKK+K + ++  N  S + +    PS SG   
Sbjct: 6   SKHGRDQTQDFQGFFNDLQDWELSLKDKDKKIKQQPANSSNPSSETFR----PSGSGKYD 61

Query: 61  YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAY 120
           +++ Y  +  +SSSL+ E S  D++SEKE GNE FKQKKF EAIDCYSRSIALSP AV Y
Sbjct: 62  FAKKYRSIRDLSSSLIGE-SLLDSSSEKEQGNEFFKQKKFNEAIDCYSRSIALSPNAVTY 120

Query: 121 ANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRL 180
           ANRAMAYLK++R++EAE DCTEALNLDDRYIKAYSRRATARKELG +KE+ ED+EFALRL
Sbjct: 121 ANRAMAYLKIKRYREAEVDCTEALNLDDRYIKAYSRRATARKELGMIKEAKEDAEFALRL 180

Query: 181 EPQNQEIKKQLAEVKSLYEKEVFQKASKTLEKYGKSGMKVNGHE---------------- 224
           EP++QE+KKQ A++KSL EKE+ +KA+  ++   +  +K +G +                
Sbjct: 181 EPESQELKKQYADIKSLLEKEIIEKATGAMQSTAQELLKTSGLDKKIQKPKTEMTSKPVT 240

Query: 225 ---------VRAVRNTIQKTGVAEIQDLTISKKTENKNLRDESKTE-------------- 261
                    V+ V  + + +G   I+++   +K++  +++  + TE              
Sbjct: 241 LVAKTNRDIVQPVLGSNESSGKKLIENIQPEEKSKEGSMKIPAITEILDSKKVTPGSQSY 300

Query: 262 -GQRDGSGANATHISGLDKRNHRTKKAVLDASVQELATRATSRAVAEAAKNITPPKSAYE 320
             +   S  N T  SG +  N  +K+  L  SVQELA  A S A+ EA+KNI  PKSAYE
Sbjct: 301 EKEAKPSDRNGTQPSGPE--NQVSKQLELKPSVQELAAHAASLAMTEASKNIKTPKSAYE 358

Query: 321 FEVSWRGFAGDHALQARLLKAISPNALPQIFKNALSASILIDIVKVVATFFT 372
           FE SWR F+GD AL+++LLK  +P++LPQIFKNAL++ +L+DI+K VA+FFT
Sbjct: 359 FENSWRSFSGDSALRSQLLKVTTPSSLPQIFKNALTSPVLVDIIKCVASFFT 410

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297853532|ref|XP_002894647.1| hypothetical protein ARALYDRAFT_474807 [Arabidopsis lyrata subsp. lyrata] gi|297340489|gb|EFH70906.1| hypothetical protein ARALYDRAFT_474807 [Arabidopsis lyrata subsp. lyrata]

 Score =  355 bits (912), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 208/415 (50%), Positives = 269/415 (64%), Gaps = 60/415 (14%)

Query: 3   KHNRDQALDFQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SY 61
           KH RDQ    QGFLNDLQDW+LSL +KDKK+K +  +  N  S + +    PS SG   +
Sbjct: 7   KHGRDQT---QGFLNDLQDWELSLKDKDKKIKQQRDNSPNPSSENFR----PSGSGQYDF 59

Query: 62  SRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYA 121
            +NY  V  +SSSL+ E S  D+ SEKE GNE FKQKKF EAIDCYSRSIALSP A+AYA
Sbjct: 60  VKNYHSVRDLSSSLIGE-SLLDSNSEKEQGNEFFKQKKFNEAIDCYSRSIALSPNAIAYA 118

Query: 122 NRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLE 181
           NRAMAYLK++R++EA+ DCTEALNLDDRYIKAYSRRATARKELG +KE+ ED+EFALRLE
Sbjct: 119 NRAMAYLKIKRYREADVDCTEALNLDDRYIKAYSRRATARKELGMIKEAKEDAEFALRLE 178

Query: 182 PQNQEIKKQLAEVKSLYEKEVFQKASKTLEKYGKSGMKVNGHEVRAVRNTIQKTGVAEIQ 241
           P++QE+KKQ A++KSL EKE+ +KA+  ++   +  +K +G + +     IQK     ++
Sbjct: 179 PESQELKKQYADIKSLLEKEIIEKATGAMQSTAQELLKTSGLDKK-----IQKPNTETLK 233

Query: 242 DLTISKKTEN------------------KNLRDESKT----------------------- 260
            +T+  KT                    +N++ E K+                       
Sbjct: 234 PVTLGTKTNRDMGQPVPGSKESSGKKLIENIQPEGKSIEGSKKIPAIMENLDSKKVTPRV 293

Query: 261 ---EGQRDGSGANATHISGLDKRNHRTKKAVLDASVQELATRATSRAVAEAAKNITPPKS 317
              E +   S  N T  SG  + N  +KK  L  SVQELA  A S A++EA+KNI  PKS
Sbjct: 294 QSYEKEVKSSDRNGTQPSG--QGNQVSKKLELKPSVQELAAHAASLAMSEASKNIKAPKS 351

Query: 318 AYEFEVSWRGFAGDHALQARLLKAISPNALPQIFKNALSASILIDIVKVVATFFT 372
           AYEFE SWR F+GD ALQ +LLK +SP+ LPQIFKNA+++ +L+DI+K VA+FFT
Sbjct: 352 AYEFENSWRSFSGDLALQTQLLKVMSPSTLPQIFKNAMTSPVLVDIIKCVASFFT 406

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	372
MGI|MGI:1277218	660	Rpap3 "RNA polymerase II assoc	0.360	0.203	0.463	3e-28
ZFIN|ZDB-GENE-040426-928	273	rpap3 "RNA polymerase II assoc	0.293	0.399	0.427	3.4e-23
TAIR|locus:2088600	589	TOC64-III "translocon at the o	0.311	0.196	0.487	3.1e-21
UNIPROTKB|Q9MUK5	593	TOC64 "Translocon at the outer	0.346	0.217	0.393	6.7e-21
UNIPROTKB|Q07617	926	SPAG1 "Sperm-associated antige	0.577	0.232	0.341	9.5e-21
MGI|MGI:1349387	901	Spag1 "sperm associated antige	0.513	0.211	0.341	4.1e-19
UNIPROTKB|F1P4X4	304	TOMM34 "Uncharacterized protei	0.298	0.365	0.441	9.7e-19
ZFIN|ZDB-GENE-050327-75	481	zgc:110801 "zgc:110801" [Danio	0.354	0.274	0.345	3.9e-17
RGD|1310702	893	Spag1 "sperm associated antige	0.379	0.157	0.402	5.7e-17
UNIPROTKB|E1BGD1	309	TOMM34 "Uncharacterized protei	0.306	0.368	0.448	8.1e-17

MGI|MGI:1277218 Rpap3 "RNA polymerase II associated protein 3" [Mus musculus (taxid:10090)]

 Score = 297 (109.6 bits), Expect = 3.0e-28, Sum P(2) = 3.0e-28
 Identities = 63/136 (46%), Positives = 91/136 (66%)

Query:    67 PVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAM 125
             P +  S     ++    A +EK+LGN  FK+ K+++AI+CY+R IA   T A+  ANRAM
Sbjct:   267 PAAGESKPTGGQQGRQKAIAEKDLGNGFFKEGKYEQAIECYTRGIAADRTNALLPANRAM 326

Query:   126 AYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ 185
             AYLK++R++EAE DCT+A+ LD  Y KA++RR TAR  LGK+ E+ +D E  L LEP N+
Sbjct:   327 AYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTARTFLGKINEAKQDFETVLLLEPGNK 386

Query:   186 EIKKQLAEVKS-LYEK 200
             +   +L+ +K  L EK
Sbjct:   387 QAATELSRIKKELIEK 402

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-040426-928 rpap3 "RNA polymerase II associated protein 3" [Danio rerio (taxid:7955)]

 Score = 235 (87.8 bits), Expect = 3.4e-23, Sum P(2) = 3.4e-23
 Identities = 47/110 (42%), Positives = 69/110 (62%)

Query:    84 ATSEKELGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTE 142
             A +EKE GN+ FK  +F  A++CY+R++   P   V   NRA  + +L++F  AE DC  
Sbjct:   128 ALAEKEKGNQFFKDGQFDSAVECYTRAMDADPYNPVPPTNRATCFYRLKKFAVAESDCNL 187

Query:   143 ALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLA 192
             A+ LD +Y+KAY RRA  R  L K  E++ED E  L+L+P N E +++ A
Sbjct:   188 AIALDSKYVKAYIRRAATRTALEKHPEALEDYEMVLKLDPGNSERERERA 237

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

TAIR|locus:2088600 TOC64-III "translocon at the outer membrane of chloroplasts 64-III" [Arabidopsis thaliana (taxid:3702)]

 Score = 257 (95.5 bits), Expect = 3.1e-21, P = 3.1e-21
 Identities = 59/121 (48%), Positives = 79/121 (65%)

Query:    66 DPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRA 124
             DP S    ++  EES   A   KE GN+ FK+K +++AI  YS +I LS   A  Y+NRA
Sbjct:   460 DPKSS-KKAITKEESAEIA---KEKGNQAFKEKLWQKAIGLYSEAIKLSDNNATYYSNRA 515

Query:   125 MAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN 184
              AYL+L  F +AE+DCT+A+ LD + +KAY RR TAR+ LG  K +IED  +AL LEP N
Sbjct:   516 AAYLELGGFLQAEEDCTKAITLDKKNVKAYLRRGTAREMLGDCKGAIEDFRYALVLEPNN 575

Query:   185 Q 185
             +
Sbjct:   576 K 576

GO:0016884 "carbon-nitrogen ligase activity, with glutamine as amido-N-donor" evidence=IEA

GO:0031359 "integral to chloroplast outer membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

GO:0009536 "plastid" evidence=IDA

UNIPROTKB|Q9MUK5 TOC64 "Translocon at the outer membrane of chloroplasts 64" [Pisum sativum (taxid:3888)]

 Score = 254 (94.5 bits), Expect = 6.7e-21, P = 6.7e-21
 Identities = 52/132 (39%), Positives = 86/132 (65%)

Query:    69 SHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIAL-SPTAVAYANRAMAY 127
             S  S S++++E + + + EK  GN+ +K K++++AI  Y+ +I L    A  Y+NRA AY
Sbjct:   464 SKSSKSVVSKEQSAEISKEK--GNQAYKDKQWQKAIGFYTEAIKLCGNNATYYSNRAQAY 521

Query:   128 LKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI 187
             L+L  + +AE+DCT A++ D + +KAY RR TAR+ LG  KE+I+D ++AL LEP N+  
Sbjct:   522 LELGSYLQAEEDCTTAISFDKKNVKAYFRRGTAREMLGYYKEAIDDFKYALVLEPTNKRA 581

Query:   188 KKQLAEVKSLYE 199
                   ++ L++
Sbjct:   582 ASSAERLRKLFQ 593

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q07617 SPAG1 "Sperm-associated antigen 1" [Homo sapiens (taxid:9606)]

 Score = 256 (95.2 bits), Expect = 9.5e-21, P = 9.5e-21
 Identities = 81/237 (34%), Positives = 114/237 (48%)

Query:    72 SSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLR 131
             ++ L  +E    AT EKE GNE F    ++EA+  Y+RSI+  PT VAY NRA A +KL+
Sbjct:   197 TAGLTEKEKDFLATREKEKGNEAFNSGDYEEAVMYYTRSISALPTVVAYNNRAQAEIKLQ 256

Query:   132 RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQL 191
              +  A  DC + L L+   +KA  RRAT  K   KL+E+ ED    L +EP N   KK L
Sbjct:   257 NWNSAFQDCEKVLELEPGNVKALLRRATTYKHQNKLREATEDLSKVLDVEPDNDLAKKTL 316

Query:   192 AEV-KSLYEKE------------VFQKASKTLEKYGKSGMKVNGHEVRAV-RNTIQKTGV 237
             +EV + L   E            V Q+   + ++ GKSG K   HE     +   +  G 
Sbjct:   317 SEVERDLKNSEAASETQTKGKRMVIQEIENSEDEEGKSGRK---HEDGGGDKKPAEPAGA 373

Query:   238 AEIQDLTISKKTENKNLRDESKTEGQRDGSGA---NATHISGLDKRNHRTKKAVLDA 291
             A      +    + K L  +++  G+R   GA     T  +G DKR+ R   A   A
Sbjct:   374 ARAAQPCVMGNIQKK-LTGKAEG-GKRPARGAPQRGQTPEAGADKRSPRRASAAAAA 428

GO:0005525 "GTP binding" evidence=IEA

GO:0007338 "single fertilization" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

MGI|MGI:1349387 Spag1 "sperm associated antigen 1" [Mus musculus (taxid:10090)]

 Score = 249 (92.7 bits), Expect = 4.1e-19, P = 4.1e-19
 Identities = 69/202 (34%), Positives = 104/202 (51%)

Query:    72 SSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLR 131
             ++ L  +E +  A  EK  GNE F    ++EA+  Y+RS++  PTA+AY NRA A +KL+
Sbjct:   201 TAGLTEKEKSFLANREKGKGNEAFYSGDYEEAVMYYTRSLSALPTAIAYNNRAQAEIKLQ 260

Query:   132 RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQL 191
             R+  A +DC +AL LD   +KA  RRAT  K   KL+E+++D    L++EP N   KK L
Sbjct:   261 RWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAKKTL 320

Query:   192 AEV-KSLYEKEV---FQKASKTL-----EKYGKSGMKVNGHEVRAVRNTIQKTGVAEIQD 242
             +EV + L   E     Q   K +     E  G  G K +  E R    +  +  +  IQ 
Sbjct:   321 SEVERDLKNSEPVSELQTKGKRMVIEEVENSGDEGGKGSADE-REDGGS-DEAAMGNIQK 378

Query:   243 LTISKKTENKNLRDESKTEGQR 264
               + +++E        +T G R
Sbjct:   379 KLMVRRSEGGRRSRRGRTPGPR 400

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007338 "single fertilization" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|F1P4X4 TOMM34 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 226 (84.6 bits), Expect = 9.7e-19, P = 9.7e-19
 Identities = 49/111 (44%), Positives = 68/111 (61%)

Query:    84 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEA 143
             A + KE GN+  K+   K+AI+ YS S+ L+     Y NRA+ YL L++ +EA  DCTEA
Sbjct:   191 AQTLKEEGNKLVKKGNHKKAIEKYSESLKLNQECATYTNRALCYLTLKQHKEAVQDCTEA 250

Query:   144 LNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV 194
             L LD + +KA+ RRA A KEL   K SI D    L++EP+N    + L E+
Sbjct:   251 LRLDPKNVKAFYRRAQALKELKDYKSSIADINSLLKIEPKNTAALRLLQEL 301

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0006626 "protein targeting to mitochondrion" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

ZFIN|ZDB-GENE-050327-75 zgc:110801 "zgc:110801" [Danio rerio (taxid:7955)]

 Score = 231 (86.4 bits), Expect = 3.9e-17, P = 3.9e-17
 Identities = 46/133 (34%), Positives = 78/133 (58%)

Query:    75 LMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRF 133
             +  EE    A   KE  N+ FK K ++ AI  Y+ ++ L+PT  + Y+NR+++YL+   +
Sbjct:     1 MAEEERNASAEKLKEKANDYFKDKDYENAIKYYTEALDLNPTNPIYYSNRSLSYLRTECY 60

Query:   134 QEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAE 193
               A  D T AL LD  Y+K Y RRAT+   LGK K +++D E  +R+ P +++ K +  E
Sbjct:    61 GYALADATRALELDKNYLKGYYRRATSNMALGKFKAALKDYETVVRVRPNDKDAKMKYQE 120

Query:   194 VKSLYEKEVFQKA 206
                + +++ F++A
Sbjct:   121 CNKIVKQKAFERA 133

GO:0016787 "hydrolase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA

GO:0006470 "protein dephosphorylation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

RGD|1310702 Spag1 "sperm associated antigen 1" [Rattus norvegicus (taxid:10116)]

 Score = 234 (87.4 bits), Expect = 5.7e-17, P = 5.7e-17
 Identities = 58/144 (40%), Positives = 83/144 (57%)

Query:    72 SSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLR 131
             ++ L  +E    A  EK  GNE F    ++EA+  Y+RS++  PTA AY NRA A +KL+
Sbjct:   201 TAGLTEKEKNFLANREKGKGNEAFYSGDYEEAVMYYTRSLSALPTATAYNNRAQAEIKLQ 260

Query:   132 RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQL 191
             R+  A +DC +AL L+   IKA  RRAT  K   K  E+++D    L+ EP N   KK L
Sbjct:   261 RWSSALEDCEKALELEPGNIKALLRRATTYKHQNKFLEAVDDLRKVLQAEPDNDLAKKTL 320

Query:   192 AEVKSLYEKEVFQKASKTLEKYGK 215
             +EV+   E +  + AS+ L+  GK
Sbjct:   321 SEVER--ELKNSEPASE-LQTKGK 341

GO:0005525 "GTP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007338 "single fertilization" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|E1BGD1 TOMM34 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 219 (82.2 bits), Expect = 8.1e-17, P = 8.1e-17
 Identities = 52/116 (44%), Positives = 73/116 (62%)

Query:    84 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVA-YANRAMAYLKLRRFQEAEDDCTE 142
             A + KE GNE  K+   K+AI+ YS S+  S    A Y+NRA+ +L+L++FQEA  DCTE
Sbjct:   193 ARALKEEGNELVKKGNHKQAIEKYSESLWFSNLESATYSNRALCHLELKQFQEAVKDCTE 252

Query:   143 ALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV-KSL 197
             AL LD + +KA+ RRA A K L   + S  D +  L++EP+N   +K   EV +SL
Sbjct:   253 ALRLDGKNVKAFYRRAQAYKALKDFRSSFADIDSLLQIEPRNGPAQKLRQEVNRSL 308

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0006626 "protein targeting to mitochondrion" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	372
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	9e-21
pfam13877	94	pfam13877, RPAP3_C, Potential Monad-binding region	3e-17
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	4e-16
pfam13414	69	pfam13414, TPR_11, TPR repeat	2e-12
pfam13414	69	pfam13414, TPR_11, TPR repeat	1e-09
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-09
PLN03088	356	PLN03088, PLN03088, SGT1, suppressor of G2 allele	1e-08
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	4e-05
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	4e-05
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	7e-05
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	1e-04
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	3e-04
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	4e-04
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	8e-04
pfam07719	34	pfam07719, TPR_2, Tetratricopeptide repeat	0.002

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 85.9 bits (213), Expect = 9e-21
 Identities = 39/97 (40%), Positives = 56/97 (57%), Gaps = 1/97 (1%)

Query: 88  KELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNL 146
             LGN  +K   + EA++ Y +++ L P  A AY N A AY KL +++EA +D  +AL L
Sbjct: 4   LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL 63

Query: 147 DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQ 183
           D    KAY     A  +LGK +E++E  E AL L+P 
Sbjct: 64  DPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|222431 pfam13877, RPAP3_C, Potential Monad-binding region of RPAP3

 Score = 75.7 bits (187), Expect = 3e-17
 Identities = 25/60 (41%), Positives = 38/60 (63%)

Query: 313 TPPKSAYEFEVSWRGFAGDHALQARLLKAISPNALPQIFKNALSASILIDIVKVVATFFT 372
             PK+AYEFE +WR  +GD  L+ + LK I P++LP++F N+L   +L DI+K +     
Sbjct: 2   PAPKNAYEFERAWRRLSGDPDLRYQYLKNIPPDSLPKLFGNSLDPDLLGDILKALNEHLV 61

This domain is found at the C-terminus of RNA-polymerase II-associated proteins. These proteins bind to Monad and are involved in regulating apoptosis. They contain TPR-repeats towards the N_terminus. Length = 94

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 79.3 bits (195), Expect = 4e-16
 Identities = 45/146 (30%), Positives = 70/146 (47%), Gaps = 1/146 (0%)

Query: 29  KDKKMKHKASSKDNLVSSSLKSAKKPS-PSGNSYSRNYDPVSHISSSLMNEESTPDATSE 87
           K ++ K K + K+    +  K +  P            +      ++L  EE    A   
Sbjct: 71  KKERRKRKQAEKETEGKTEEKKSTAPKNAPVEPADELPEIDESSVANLSEEERKKYAAKL 130

Query: 88  KELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLD 147
           KE GN+ ++ K F +AI  YS++I   P  V Y+NRA  +  L  +++  +D T AL LD
Sbjct: 131 KEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD 190

Query: 148 DRYIKAYSRRATARKELGKLKESIED 173
             Y KA +RRA A   LGK  +++ D
Sbjct: 191 PDYSKALNRRANAYDGLGKYADALLD 216

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 61.9 bits (151), Expect = 2e-12
 Identities = 30/67 (44%), Positives = 43/67 (64%), Gaps = 2/67 (2%)

Query: 83  DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKL-RRFQEAEDDC 140
           +A + K LGN  FK   + EAI+ Y +++ L P  A AY N A+AYLKL + ++EA +D 
Sbjct: 2   NAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDL 61

Query: 141 TEALNLD 147
            +AL LD
Sbjct: 62  EKALELD 68

Length = 69

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 53.5 bits (129), Expect = 1e-09
 Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 117 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGK-LKESIEDSE 175
           A A  N   A  KL  + EA +   +AL LD    +AY   A A  +LGK  +E++ED E
Sbjct: 3   AEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLE 62

Query: 176 FALRLEP 182
            AL L+P
Sbjct: 63  KALELDP 69

Length = 69

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 53.9 bits (130), Expect = 2e-09
 Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 2/94 (2%)

Query: 119 AYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFAL 178
           A  N    Y KL  + EA +   +AL LD     AY   A A  +LGK +E++ED E AL
Sbjct: 2   ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61

Query: 179 RLEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEK 212
            L+P N +    L    + Y+   +++A +  EK
Sbjct: 62  ELDPDNAKAYYNLG--LAYYKLGKYEEALEAYEK 93

Length = 100

>gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional

 Score = 55.9 bits (135), Expect = 1e-08
 Identities = 37/114 (32%), Positives = 54/114 (47%), Gaps = 1/114 (0%)

Query: 89  ELGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTEALNLD 147
           +   E F    F  A+D Y+++I L P  A  YA+RA A +KL  F EA  D  +A+ LD
Sbjct: 7   DKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD 66

Query: 148 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKE 201
               KAY R+ TA  +L + + +    E    L P +    K + E      +E
Sbjct: 67  PSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAEE 120

Length = 356

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 40.1 bits (95), Expect = 4e-05
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 117 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY 150
           A A  N   AYLKL ++ EA +   +AL L+   
Sbjct: 1   AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34

Length = 34

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 41.2 bits (97), Expect = 4e-05
 Identities = 17/65 (26%), Positives = 28/65 (43%)

Query: 116 TAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSE 175
            A A  N A+   +L  + EA +   +AL L     + +   A A   L +L  ++ D +
Sbjct: 4   LAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYD 63

Query: 176 FALRL 180
            AL  
Sbjct: 64  EALEY 68

Length = 78

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 39.4 bits (93), Expect = 7e-05
 Identities = 14/31 (45%), Positives = 17/31 (54%)

Query: 117 AVAYANRAMAYLKLRRFQEAEDDCTEALNLD 147
           A A  N   AYLKL  + EA +   +AL LD
Sbjct: 1   AEALYNLGNAYLKLGDYDEALEYYEKALELD 31

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 8/74 (10%)

Query: 84  ATSEKELGNECFKQKKFKEAIDCYSRSIALSP--------TAVAYANRAMAYLKLRRFQE 135
           A +   L     +   + EA++   +++ L+         TA A  N A  YL L  + E
Sbjct: 5   AAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDE 64

Query: 136 AEDDCTEALNLDDR 149
           A +   +AL L + 
Sbjct: 65  ALEYLEKALALREA 78

Length = 78

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 37.4 bits (88), Expect = 3e-04
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT 116
           LGN   K  K+ EA++ Y +++ L+P 
Sbjct: 7   LGNAYLKLGKYDEALEYYEKALELNPN 33

Length = 34

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 41.4 bits (95), Expect = 4e-04
 Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 7/123 (5%)

Query: 95  FKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLD-DR 149
           ++   ++EA++ Y +++ L P     A A          L R++EA +   +AL L+ D 
Sbjct: 141 YELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDD 200

Query: 150 YIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKT 209
             +A         +LGK +E++E  E AL L+P N E    LA +  L E   +++A + 
Sbjct: 201 DAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALL--LLELGRYEEALEA 258

Query: 210 LEK 212
           LEK
Sbjct: 259 LEK 261

Length = 291

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 36.3 bits (85), Expect = 8e-04
 Identities = 9/29 (31%), Positives = 15/29 (51%)

Query: 88  KELGNECFKQKKFKEAIDCYSRSIALSPT 116
             LGN   K   + EA++ Y +++ L P 
Sbjct: 5   YNLGNAYLKLGDYDEALEYYEKALELDPN 33

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat

 Score = 35.2 bits (82), Expect = 0.002
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 117 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY 150
           A A  N  +AY KL  ++EA +   +AL LD   
Sbjct: 1   AEALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34

This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	372
KOG4648	536	consensus Uncharacterized conserved protein, conta	100.0
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.8
KOG0553	304	consensus TPR repeat-containing protein [General f	99.8
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.78
PRK15359	144	type III secretion system chaperone protein SscB;	99.75
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.7
PF13877	94	RPAP3_C: Potential Monad-binding region of RPAP3	99.69
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.69
KOG1126	638	consensus DNA-binding cell division cycle control	99.65
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.65
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.65
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.62
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.61
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.59
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.56
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.56
KOG4234	271	consensus TPR repeat-containing protein [General f	99.56
PRK11189	296	lipoprotein NlpI; Provisional	99.56
KOG1126	638	consensus DNA-binding cell division cycle control	99.55
PRK11189	296	lipoprotein NlpI; Provisional	99.55
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.54
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.53
PRK12370	553	invasion protein regulator; Provisional	99.52
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.52
PRK15359	144	type III secretion system chaperone protein SscB;	99.52
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.52
PRK12370	553	invasion protein regulator; Provisional	99.51
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.49
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.48
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.47
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.45
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.45
KOG0553	304	consensus TPR repeat-containing protein [General f	99.45
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.42
PLN02789	320	farnesyltranstransferase	99.4
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.39
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.39
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.38
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.37
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.36
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.36
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.36
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	99.36
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.35
KOG1125	579	consensus TPR repeat-containing protein [General f	99.35
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.34
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.34
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.33
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.33
PLN02789	320	farnesyltranstransferase	99.32
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.31
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.3
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.3
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.28
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.28
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.27
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.27
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.27
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.27
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.25
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.24
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.24
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.23
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.22
KOG1125	579	consensus TPR repeat-containing protein [General f	99.21
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.21
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.2
KOG1129	478	consensus TPR repeat-containing protein [General f	99.2
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.2
KOG2076	895	consensus RNA polymerase III transcription factor	99.19
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.19
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.19
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.15
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	99.14
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	99.12
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.12
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.12
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.11
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.1
KOG1129	478	consensus TPR repeat-containing protein [General f	99.09
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.08
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.08
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.08
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.07
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.06
PRK15331	165	chaperone protein SicA; Provisional	99.05
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.05
PRK10803	263	tol-pal system protein YbgF; Provisional	99.05
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.04
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.03
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.03
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	99.03
PRK14574	822	hmsH outer membrane protein; Provisional	99.02
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	99.02
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.01
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.98
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.96
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.96
PRK14574	822	hmsH outer membrane protein; Provisional	98.96
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.94
PRK11906	458	transcriptional regulator; Provisional	98.94
PF12688	120	TPR_5: Tetratrico peptide repeat	98.92
KOG2003	840	consensus TPR repeat-containing protein [General f	98.92
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.92
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.91
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.91
KOG4555	175	consensus TPR repeat-containing protein [Function	98.91
KOG4234	271	consensus TPR repeat-containing protein [General f	98.91
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.91
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.89
PF13512	142	TPR_18: Tetratricopeptide repeat	98.87
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.86
KOG2076	895	consensus RNA polymerase III transcription factor	98.86
KOG2003	840	consensus TPR repeat-containing protein [General f	98.85
PF13371	73	TPR_9: Tetratricopeptide repeat	98.81
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.81
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.8
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.79
PF13371	73	TPR_9: Tetratricopeptide repeat	98.79
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.79
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.79
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.78
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.77
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.77
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.76
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.76
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.76
PRK10803	263	tol-pal system protein YbgF; Provisional	98.75
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.74
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.73
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.73
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.72
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.72
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.72
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.71
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.71
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.69
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.68
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	98.67
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.66
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.66
PRK11906	458	transcriptional regulator; Provisional	98.64
PRK15331	165	chaperone protein SicA; Provisional	98.64
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.62
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.61
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.61
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.61
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.6
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.59
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	98.58
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.58
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.56
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	98.53
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.51
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.5
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.49
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.49
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.45
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.43
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.4
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.4
KOG4555	175	consensus TPR repeat-containing protein [Function	98.37
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.37
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.35
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.35
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.35
PF13512	142	TPR_18: Tetratricopeptide repeat	98.34
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.29
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.29
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.27
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.27
PF12688	120	TPR_5: Tetratrico peptide repeat	98.25
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.23
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.22
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.16
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.14
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.12
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.09
PF13428	44	TPR_14: Tetratricopeptide repeat	98.06
PF13431	34	TPR_17: Tetratricopeptide repeat	98.06
KOG1941	518	consensus Acetylcholine receptor-associated protei	98.05
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	98.04
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.02
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.01
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	98.0
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.0
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.99
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.98
KOG1310	758	consensus WD40 repeat protein [General function pr	97.97
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.96
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.96
PLN03218	1060	maturation of RBCL 1; Provisional	97.91
PF13428	44	TPR_14: Tetratricopeptide repeat	97.9
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.89
PLN03218	1060	maturation of RBCL 1; Provisional	97.87
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.85
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.85
PLN03077	857	Protein ECB2; Provisional	97.82
PF13431	34	TPR_17: Tetratricopeptide repeat	97.79
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.79
KOG1915	677	consensus Cell cycle control protein (crooked neck	97.79
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	97.78
KOG2610	491	consensus Uncharacterized conserved protein [Funct	97.76
PRK04841	903	transcriptional regulator MalT; Provisional	97.74
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.73
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.68
KOG1586	288	consensus Protein required for fusion of vesicles	97.66
KOG4507	886	consensus Uncharacterized conserved protein, conta	97.63
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	97.63
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.59
KOG1941	518	consensus Acetylcholine receptor-associated protei	97.58
PRK04841	903	transcriptional regulator MalT; Provisional	97.55
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.52
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.5
PLN03077	857	Protein ECB2; Provisional	97.5
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.46
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.41
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.39
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.35
KOG2471	696	consensus TPR repeat-containing protein [General f	97.32
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.31
PRK10941	269	hypothetical protein; Provisional	97.26
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	97.25
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.25
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.25
KOG1915	677	consensus Cell cycle control protein (crooked neck	97.23
KOG2471	696	consensus TPR repeat-containing protein [General f	97.23
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.18
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.18
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.16
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.11
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.07
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	97.04
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	96.96
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.79
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	96.78
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	96.75
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.75
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.75
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.74
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.73
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.73
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.72
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.71
KOG3364	149	consensus Membrane protein involved in organellar	96.71
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.7
COG3898	531	Uncharacterized membrane-bound protein [Function u	96.7
KOG1586	288	consensus Protein required for fusion of vesicles	96.68
PRK10941	269	hypothetical protein; Provisional	96.68
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.67
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	96.67
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.63
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	96.55
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	96.52
KOG4507	886	consensus Uncharacterized conserved protein, conta	96.52
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.52
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.5
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.49
KOG4814	872	consensus Uncharacterized conserved protein [Funct	96.46
KOG2300	629	consensus Uncharacterized conserved protein [Funct	96.41
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	96.4
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.37
KOG2610	491	consensus Uncharacterized conserved protein [Funct	96.37
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	96.35
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	96.28
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.2
KOG2047	835	consensus mRNA splicing factor [RNA processing and	96.17
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	96.01
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	95.97
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	95.89
KOG2047	835	consensus mRNA splicing factor [RNA processing and	95.87
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	95.72
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	95.69
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	95.69
KOG1585	308	consensus Protein required for fusion of vesicles	95.68
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	95.5
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	95.27
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	95.22
COG2912	269	Uncharacterized conserved protein [Function unknow	95.2
COG4976	287	Predicted methyltransferase (contains TPR repeat)	95.12
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	94.98
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	94.97
KOG1550	552	consensus Extracellular protein SEL-1 and related	94.94
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	94.93
KOG3364	149	consensus Membrane protein involved in organellar	94.92
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	94.9
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	94.87
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	94.81
KOG1585	308	consensus Protein required for fusion of vesicles	94.8
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	94.79
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	94.71
KOG1310	758	consensus WD40 repeat protein [General function pr	94.59
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	94.54
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	94.29
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	94.29
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	94.15
COG3898	531	Uncharacterized membrane-bound protein [Function u	94.06
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	93.95
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	93.94
COG2912	269	Uncharacterized conserved protein [Function unknow	93.68
COG5191	435	Uncharacterized conserved protein, contains HAT (H	93.53
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	92.98
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	92.85
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	92.68
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	92.62
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	92.57
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	92.51
KOG2300	629	consensus Uncharacterized conserved protein [Funct	92.46
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	92.28
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	92.22
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	92.14
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	92.01
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	91.98
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	91.61
COG3118	304	Thioredoxin domain-containing protein [Posttransla	91.46
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	91.13
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	90.9
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	90.35
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	90.32
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	90.07
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	90.0
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	89.94
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	89.92
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	89.9
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	89.9
KOG0529	421	consensus Protein geranylgeranyltransferase type I	89.89
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	89.79
KOG1550	552	consensus Extracellular protein SEL-1 and related	89.7
COG3629	280	DnrI DNA-binding transcriptional activator of the	89.66
KOG3616	1636	consensus Selective LIM binding factor [Transcript	89.65
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	89.24
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	89.15
KOG0529	421	consensus Protein geranylgeranyltransferase type I	89.07
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	88.84
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	88.6
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	88.4
KOG2041	1189	consensus WD40 repeat protein [General function pr	88.38
KOG4814	872	consensus Uncharacterized conserved protein [Funct	88.27
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	87.9
COG3947	361	Response regulator containing CheY-like receiver a	87.71
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	87.34
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	87.25
KOG2581	493	consensus 26S proteasome regulatory complex, subun	87.13
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	86.68
COG4941	415	Predicted RNA polymerase sigma factor containing a	86.65
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	85.91
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	85.88
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	85.66
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	85.66
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	85.53
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	84.48
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	84.34
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	83.9
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	83.49
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	83.34
KOG4014	248	consensus Uncharacterized conserved protein (conta	82.96
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	82.44
COG5191	435	Uncharacterized conserved protein, contains HAT (H	82.15
PHA02537	230	M terminase endonuclease subunit; Provisional	82.02
COG3629	280	DnrI DNA-binding transcriptional activator of the	81.2
KOG2041	1189	consensus WD40 repeat protein [General function pr	80.5

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=100.00  E-value=6.6e-32  Score=245.36  Aligned_cols=198  Identities=38%  Similarity=0.591  Sum_probs=152.6

Q ss_pred             CchhHhhhHHHHHHHHhhHHHHHHHHHHHHHHhhhcCCCCCccccccc-cccCCCCCCCCCCCCchhhHHHHHhhhh---
Q 017383            1 MAKHNRDQALDFQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSL-KSAKKPSPSGNSYSRNYDPVSHISSSLM---   76 (372)
Q Consensus         1 ~~~~~~~n~~~l~~~~~~l~~~e~~ik~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~y~~g~~~~A~~~~~~al~---   76 (372)
                      +|+|+|+|++++|+|+++|++|+..|+.+|.+++++++...+...... .....      ..|.+...-..++.-++   
T Consensus        10 lq~qvrqna~e~Q~F~~DL~~WE~diK~KDkel~~Q~~~Pan~~~P~r~~FR~~------ksGK~~~ssKK~Rs~I~~~d   83 (536)
T KOG4648|consen   10 LQRQVRQNAREYQNFVKDLYSWEQDIKNKDKELQKQPLSPANKDLPVRSHFRTD------KSGKESPSSKKARSPIEKQD   83 (536)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHhhhHHHHhCCCCccccCCchhhhcccC------CCCCcCcchhhhhcchhhcc
Confidence            478999999999999999999999999999999999632221111000 00000      11222222222222111   


Q ss_pred             --cCCC----CchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 017383           77 --NEES----TPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR  149 (372)
Q Consensus        77 --~~p~----~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~  149 (372)
                        .++-    ...+.-++..|+.||++|+|++||.||.+++.++|. +..+.|||++|+++.+|..|+.+|+.|+.||..
T Consensus        84 L~vd~I~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~  163 (536)
T KOG4648|consen   84 LPVDPIAQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL  163 (536)
T ss_pred             CCccHHHHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH
Confidence              1100    001122578999999999999999999999999996 999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHh
Q 017383          150 YIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQ  204 (372)
Q Consensus       150 ~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~~~~~~~~  204 (372)
                      +.++|.++|.++..+|+..+|..+++.+|.|.|++.+....++.+....++.+..
T Consensus       164 Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~  218 (536)
T KOG4648|consen  164 YVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINSLRERKIAT  218 (536)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhhhHHh
Confidence            9999999999999999999999999999999999999887777776665554433

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.80  E-value=2.4e-19  Score=174.08  Aligned_cols=184  Identities=24%  Similarity=0.281  Sum_probs=155.7

Q ss_pred             HHHHHhhHHHHHHHHHHHHHHhhhcCCCCCccccccccccCCCCCCCC-CCCCchhhHHHHHhhhhcCCCCchHHHHHHH
Q 017383           12 FQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKEL   90 (372)
Q Consensus        12 l~~~~~~l~~~e~~ik~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~   90 (372)
                      ++..+++....+++-..+.+.++.++         .-.++++++|+.| ..|+...|+.+|.++++++|...++  |.++
T Consensus       190 lgnLlka~Grl~ea~~cYlkAi~~qp---------~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dA--YiNL  258 (966)
T KOG4626|consen  190 LGNLLKAEGRLEEAKACYLKAIETQP---------CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDA--YINL  258 (966)
T ss_pred             hhHHHHhhcccchhHHHHHHHHhhCC---------ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHH--HhhH
Confidence            33444555555555556666666555         3344568899998 7899999999999999999997777  6699


Q ss_pred             HHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 017383           91 GNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKE  169 (372)
Q Consensus        91 g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~  169 (372)
                      |++|-..+.|+.|+.||.+|+.+.|+ +.++-|+|.+|+.+|..+-|+..|++||.++|+++.+|.++|.++..+|+..+
T Consensus       259 GnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~e  338 (966)
T KOG4626|consen  259 GNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTE  338 (966)
T ss_pred             HHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHH
Confidence            99999999999999999999999999 99999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHccCCCcHHHHHHHH----------HHHHHHHHHHHhhh
Q 017383          170 SIEDSEFALRLEPQNQEIKKQLA----------EVKSLYEKEVFQKA  206 (372)
Q Consensus       170 A~~~~~~al~l~P~~~~~~~~l~----------~a~~~~~~~~~~~~  206 (372)
                      |..+|.++|.+.|+++++..+|+          .|..+|.+++.-.+
T Consensus       339 a~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p  385 (966)
T KOG4626|consen  339 AVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFP  385 (966)
T ss_pred             HHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhCh
Confidence            99999999999999998865544          44555555554443

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.80  E-value=7.8e-19  Score=158.71  Aligned_cols=119  Identities=42%  Similarity=0.618  Sum_probs=112.8

Q ss_pred             chHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 017383           82 PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATA  160 (372)
Q Consensus        82 ~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~  160 (372)
                      ..+..++..|+-+++.++|++|+..|++||+++|. +..|.|||.+|.++|.|+.|+++|+.||.+||.+.++|.++|.+
T Consensus        79 ~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A  158 (304)
T KOG0553|consen   79 ALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLA  158 (304)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence            35667899999999999999999999999999998 99999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHH
Q 017383          161 RKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEK  200 (372)
Q Consensus       161 ~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~~~~  200 (372)
                      |..+|++++|+..|+++|.++|+|..++..|..|...++.
T Consensus       159 ~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e  198 (304)
T KOG0553|consen  159 YLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE  198 (304)
T ss_pred             HHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999898888766654

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.78  E-value=9.8e-18  Score=163.04  Aligned_cols=133  Identities=23%  Similarity=0.265  Sum_probs=92.6

Q ss_pred             CCCCCCC-CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHh
Q 017383           53 KPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKL  130 (372)
Q Consensus        53 ~~~~~~y-~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~  130 (372)
                      .++++.| .+|+.+-||..|+++|++.|+.+++  +.++|+++-..|+..+|..||.+||.+.|+ +++.+|+|.+|..+
T Consensus       290 gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~A--y~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~  367 (966)
T KOG4626|consen  290 GNLACIYYEQGLLDLAIDTYKRALELQPNFPDA--YNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQ  367 (966)
T ss_pred             cceEEEEeccccHHHHHHHHHHHHhcCCCchHH--HhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh
Confidence            5666666 7888888888888888888887666  447777777777777777777777777766 66666666666666


Q ss_pred             cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHH
Q 017383          131 RRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI  187 (372)
Q Consensus       131 g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~  187 (372)
                      |.+++|...|.+|++..|..+.++.+||.+|...|++++|+.+|+.+|++.|...++
T Consensus       368 ~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda  424 (966)
T KOG4626|consen  368 GKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADA  424 (966)
T ss_pred             ccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHH
Confidence            666666666666666666666666666666666666666666666666666665555

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.75  E-value=6.1e-17  Score=136.19  Aligned_cols=129  Identities=15%  Similarity=0.142  Sum_probs=120.5

Q ss_pred             hHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 017383           67 PVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALN  145 (372)
Q Consensus        67 A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~  145 (372)
                      ....|++++..+|+.     +..+|.+++..|+|++|+.+|++++.++|. ..+|.++|.++..+|++++|+.+|++++.
T Consensus        12 ~~~~~~~al~~~p~~-----~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~   86 (144)
T PRK15359         12 PEDILKQLLSVDPET-----VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM   86 (144)
T ss_pred             HHHHHHHHHHcCHHH-----HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            357899999999873     447899999999999999999999999998 99999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHH
Q 017383          146 LDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEK  200 (372)
Q Consensus       146 l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~~~~  200 (372)
                      ++|+++.+++++|.++..+|++++|+..|++++.+.|+++..+...+.+...++.
T Consensus        87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~~  141 (144)
T PRK15359         87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVDT  141 (144)
T ss_pred             cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999888888776653

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.70  E-value=1.1e-16  Score=149.48  Aligned_cols=173  Identities=30%  Similarity=0.466  Sum_probs=147.3

Q ss_pred             CCCCCCCCCCCchhhHHHHHhhhhcCCCCchH----------HHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-----H
Q 017383           53 KPSPSGNSYSRNYDPVSHISSSLMNEESTPDA----------TSEKELGNECFKQKKFKEAIDCYSRSIALSPT-----A  117 (372)
Q Consensus        53 ~~~~~~y~~g~~~~A~~~~~~al~~~p~~~~a----------~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-----~  117 (372)
                      .|.-+.|..++.+.|+.+|+++|.++|....+          ..++..|+-.++.|+|..|.++|..+|.++|+     +
T Consensus       208 vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~na  287 (486)
T KOG0550|consen  208 VRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNA  287 (486)
T ss_pred             hcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhH
Confidence            34444568899999999999999999987433          35778999999999999999999999999997     7


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHHH
Q 017383          118 VAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSL  197 (372)
Q Consensus       118 ~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~  197 (372)
                      .+|.|||.+...+|+..+|+.+|+.|+.+|+.+.++++++|.|+..+++|++|+++|++|+++.-+ .+.+..+.++...
T Consensus       288 klY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~a  366 (486)
T KOG0550|consen  288 KLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLA  366 (486)
T ss_pred             HHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHH
Confidence            889999999999999999999999999999999999999999999999999999999999999887 6777777777776


Q ss_pred             HHHHHH----------hhhhh-HHHHhccccchhcChhhh
Q 017383          198 YEKEVF----------QKASK-TLEKYGKSGMKVNGHEVR  226 (372)
Q Consensus       198 ~~~~~~----------~~~~~-~~~~~~~~~~~~~~~~~~  226 (372)
                      ++++-.          ..++. ...+++++.+-++||+..
T Consensus       367 LkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~  406 (486)
T KOG0550|consen  367 LKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKN  406 (486)
T ss_pred             HHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcC
Confidence            665422          22222 236788888888888643

>PF13877 RPAP3_C: Potential Monad-binding region of RPAP3

Probab=99.69  E-value=3e-17  Score=127.67  Aligned_cols=61  Identities=38%  Similarity=0.717  Sum_probs=58.7

Q ss_pred             CCCCCchhHHHHHHhhhcCCHHHHHHHHhhcCCCchhHHHHhhcCHHHHHHHHHHHhhhcC
Q 017383          312 ITPPKSAYEFEVSWRGFAGDHALQARLLKAISPNALPQIFKNALSASILIDIVKVVATFFT  372 (372)
Q Consensus       312 ~~~p~~s~~f~~~~~~~~~~~~~~~~yl~~i~p~~l~~~f~~~l~~~~~~~i~~~l~~~~~  372 (372)
                      |++|+|+|||+++||+++++++.+|+||++|+|+.||+||+++|++++|.+||++|+.+|+
T Consensus         1 p~~P~~~~eF~~~w~~~~~~~~~~~~yL~~i~p~~l~~if~~~l~~~~L~~il~~l~~~~~   61 (94)
T PF13877_consen    1 PPAPKNSYEFERDWRRLKKDPEERYEYLKSIPPDSLPKIFKNSLEPEFLSEILEALNEHFI   61 (94)
T ss_pred             CcCCCCHHHHHHHHHHHcCCHHHHHHHHHhCChHHHHHHHHccCCHHHHHHHHHHHHHHHc
Confidence            5789999999999999999999999999999999999999999999999999999998874

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.69  E-value=1.3e-16  Score=153.49  Aligned_cols=159  Identities=28%  Similarity=0.402  Sum_probs=137.9

Q ss_pred             CCccccccccccC--CCCCCCC-CCCCchhhHHHHHhhhhcCCC--C----------------------chHHHHHHHHH
Q 017383           40 KDNLVSSSLKSAK--KPSPSGN-SYSRNYDPVSHISSSLMNEES--T----------------------PDATSEKELGN   92 (372)
Q Consensus        40 ~~~~~~~~~~~~~--~~~~~~y-~~g~~~~A~~~~~~al~~~p~--~----------------------~~a~~~~~~g~   92 (372)
                      +++.+.++..+++  .++|..| ..++++.|+.+|.++|...-.  .                      ..+...+..|+
T Consensus       287 gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGn  366 (539)
T KOG0548|consen  287 GRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGN  366 (539)
T ss_pred             hHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHH
Confidence            3455556666666  6789998 779999999999998863311  1                      01224567899


Q ss_pred             HHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 017383           93 ECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESI  171 (372)
Q Consensus        93 ~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~  171 (372)
                      .+|+.|+|..|+.+|+++|..+|+ +.+|.|||.||.++|++..|+.+|..+++++|++.++|.+-|.++..+.+|+.|+
T Consensus       367 e~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAl  446 (539)
T KOG0548|consen  367 EAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKAL  446 (539)
T ss_pred             HHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999 9999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHccCCCcHHHHHHHHHHHHHH
Q 017383          172 EDSEFALRLEPQNQEIKKQLAEVKSLY  198 (372)
Q Consensus       172 ~~~~~al~l~P~~~~~~~~l~~a~~~~  198 (372)
                      +.|++++.++|++.++...+.++....
T Consensus       447 eay~eale~dp~~~e~~~~~~rc~~a~  473 (539)
T KOG0548|consen  447 EAYQEALELDPSNAEAIDGYRRCVEAQ  473 (539)
T ss_pred             HHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence            999999999999999887777765543

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.65  E-value=5.2e-16  Score=152.72  Aligned_cols=153  Identities=15%  Similarity=0.176  Sum_probs=135.4

Q ss_pred             CCCCCCC-CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHh
Q 017383           53 KPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKL  130 (372)
Q Consensus        53 ~~~~~~y-~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~  130 (372)
                      ..+|++| -+++++.|+.+|++|+.++|.  .+++|-.+|..+....+|+.|..+|+.||..+|. ..+|+.+|++|+++
T Consensus       425 ca~GNcfSLQkdh~~Aik~f~RAiQldp~--faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kq  502 (638)
T KOG1126|consen  425 CALGNCFSLQKDHDTAIKCFKRAIQLDPR--FAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQ  502 (638)
T ss_pred             HHhcchhhhhhHHHHHHHHHHHhhccCCc--cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheecc
Confidence            5688889 568999999999999999999  4555669999999999999999999999999999 99999999999999


Q ss_pred             cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHH----------HHHHHHHHHHHH
Q 017383          131 RRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK----------KQLAEVKSLYEK  200 (372)
Q Consensus       131 g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~----------~~l~~a~~~~~~  200 (372)
                      ++++.|+-.|++|+.++|.+......+|..+..+|+.++|+..|++|+.++|.++-..          +.+.+|...++.
T Consensus       503 ek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEe  582 (638)
T KOG1126|consen  503 EKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEE  582 (638)
T ss_pred             chhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999997653          445555555555


Q ss_pred             HHHhhhh
Q 017383          201 EVFQKAS  207 (372)
Q Consensus       201 ~~~~~~~  207 (372)
                      ....-|.
T Consensus       583 Lk~~vP~  589 (638)
T KOG1126|consen  583 LKELVPQ  589 (638)
T ss_pred             HHHhCcc
Confidence            4444433

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.65  E-value=2.7e-15  Score=155.26  Aligned_cols=145  Identities=12%  Similarity=0.190  Sum_probs=116.1

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~  138 (372)
                      ..|++++|+..|++++.++|....+  +..+|.+++..|+|++|+.+|+++++++|+ +.+|+++|.+++.+|++++|+.
T Consensus       343 ~~g~~~eA~~~~~kal~l~P~~~~~--~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~  420 (615)
T TIGR00990       343 LKGKHLEALADLSKSIELDPRVTQS--YIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGK  420 (615)
T ss_pred             HcCCHHHHHHHHHHHHHcCCCcHHH--HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            6788888888888888888874444  568888888888888888888888888887 8888888888888888888888


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHH----------HHHHHHHHHHHHHHHhhh
Q 017383          139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK----------KQLAEVKSLYEKEVFQKA  206 (372)
Q Consensus       139 ~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~----------~~l~~a~~~~~~~~~~~~  206 (372)
                      +|++++.++|++..+++.+|.++..+|++++|+..|++++.+.|+++.++          +.+.+|...|++++...+
T Consensus       421 ~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p  498 (615)
T TIGR00990       421 DYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEK  498 (615)
T ss_pred             HHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence            88888888888888888888888888888888888888888888877664          445666666666665543

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.65  E-value=2.8e-15  Score=155.13  Aligned_cols=146  Identities=21%  Similarity=0.188  Sum_probs=95.1

Q ss_pred             CCCchhhHHHHHhhhhcCCCC-chHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383           61 YSRNYDPVSHISSSLMNEEST-PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (372)
Q Consensus        61 ~g~~~~A~~~~~~al~~~p~~-~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~  138 (372)
                      .++|++|+..|++++..+... ..+.++..+|.+++..|++++|+.+|+++++++|+ ..+|.++|.++..+|++++|+.
T Consensus       307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~  386 (615)
T TIGR00990       307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEE  386 (615)
T ss_pred             hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence            356667777777777653211 13444666677777777777777777777777776 6667777777777777777777


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHH----------HHHHHHHHHHHHHHHhhh
Q 017383          139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK----------KQLAEVKSLYEKEVFQKA  206 (372)
Q Consensus       139 ~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~----------~~l~~a~~~~~~~~~~~~  206 (372)
                      +|++++.++|+++.+|+.+|.++..+|++++|+.+|++++.++|++..++          +.+.+|...+++++...+
T Consensus       387 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P  464 (615)
T TIGR00990       387 DFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFP  464 (615)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            77777777777777777777777777777777777777777777665553          234555555555555444

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.62  E-value=2.3e-14  Score=118.70  Aligned_cols=126  Identities=17%  Similarity=0.239  Sum_probs=115.1

Q ss_pred             HHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 017383           69 SHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD  147 (372)
Q Consensus        69 ~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~  147 (372)
                      +.|++++..+|.+..+  ...+|..++..|++++|+.+|++++..+|. ..++.++|.++..+|++++|+.++++++.++
T Consensus         4 ~~~~~~l~~~p~~~~~--~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~   81 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQ--IYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD   81 (135)
T ss_pred             hhHHHHHcCChhhHHH--HHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4788999999985444  679999999999999999999999999998 9999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHH
Q 017383          148 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS  196 (372)
Q Consensus       148 p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~  196 (372)
                      |.++..++.+|.++...|++++|+..|+++++++|++.........+..
T Consensus        82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  130 (135)
T TIGR02552        82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEA  130 (135)
T ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence            9999999999999999999999999999999999999876655544443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.61  E-value=2.4e-14  Score=126.77  Aligned_cols=128  Identities=16%  Similarity=0.155  Sum_probs=117.2

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHH-HHhcC--HHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAY-LKLRR--FQE  135 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~-~~~g~--~~e  135 (372)
                      ..++.++++..+++++..+|++.++  |..+|.+|...|++++|+.+|++++.++|+ ..++.++|.++ ...|+  +++
T Consensus        51 ~~~~~~~~i~~l~~~L~~~P~~~~~--w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~  128 (198)
T PRK10370         51 SQQTPEAQLQALQDKIRANPQNSEQ--WALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQ  128 (198)
T ss_pred             CchhHHHHHHHHHHHHHHCCCCHHH--HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHH
Confidence            3577889999999999999996665  669999999999999999999999999998 99999999985 67787  599


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHH
Q 017383          136 AEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKK  189 (372)
Q Consensus       136 A~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~  189 (372)
                      |+..++++++++|++..+++++|.++..+|++++|+.+|+++++++|.+..-..
T Consensus       129 A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~  182 (198)
T PRK10370        129 TREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQ  182 (198)
T ss_pred             HHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHH
Confidence            999999999999999999999999999999999999999999999997654433

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.59  E-value=3e-14  Score=134.08  Aligned_cols=121  Identities=34%  Similarity=0.467  Sum_probs=108.5

Q ss_pred             hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC----------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 017383           83 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----------------AVAYANRAMAYLKLRRFQEAEDDCTEALNL  146 (372)
Q Consensus        83 ~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~----------------~~~~~~la~~~~~~g~~~eA~~~~~~Al~l  146 (372)
                      .+...+..|+.||+.|+|..|+..|++|+..-..                ..++.|++.||+++++|.+|+..|+++|.+
T Consensus       207 ~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~  286 (397)
T KOG0543|consen  207 AADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL  286 (397)
T ss_pred             HHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence            4455788999999999999999999999886331                467899999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHH
Q 017383          147 DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVF  203 (372)
Q Consensus       147 ~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~~~~~~~  203 (372)
                      +|+|++++|++|.++..+|+|+.|+.+|+++++++|+|..+...|..+...+++...
T Consensus       287 ~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~  343 (397)
T KOG0543|consen  287 DPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEE  343 (397)
T ss_pred             CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999888877766655433

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.56  E-value=5.4e-14  Score=133.36  Aligned_cols=145  Identities=19%  Similarity=0.154  Sum_probs=131.6

Q ss_pred             CCCCCC-CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhc
Q 017383           54 PSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR  131 (372)
Q Consensus        54 ~~~~~y-~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g  131 (372)
                      .+|+-| -.++.+.|+.+|+++|+++|....+  |-.+|..|..+++-..|+.+|++|++++|. -.+|+.+|.+|.-++
T Consensus       335 iIaNYYSlr~eHEKAv~YFkRALkLNp~~~~a--WTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~  412 (559)
T KOG1155|consen  335 IIANYYSLRSEHEKAVMYFKRALKLNPKYLSA--WTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMK  412 (559)
T ss_pred             eehhHHHHHHhHHHHHHHHHHHHhcCcchhHH--HHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhc
Confidence            456666 5689999999999999999996666  458899999999999999999999999998 999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHH
Q 017383          132 RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEK  200 (372)
Q Consensus       132 ~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~~~~  200 (372)
                      -+.=|+-+|++|+.+.|++...|..+|.||..+++.++|+.+|..++.....+..+...|+++...+..
T Consensus       413 Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d  481 (559)
T KOG1155|consen  413 MHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKD  481 (559)
T ss_pred             chHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999998888887666666555543

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.56  E-value=7.7e-14  Score=134.62  Aligned_cols=114  Identities=32%  Similarity=0.457  Sum_probs=108.1

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 017383           87 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG  165 (372)
Q Consensus        87 ~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg  165 (372)
                      +...|..++..|+|++|+.+|+++|+++|+ ..+|+++|.+|+.+|++++|+.++++|+.++|+++.+|+++|.++..+|
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg   84 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE   84 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            567899999999999999999999999999 9999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHH
Q 017383          166 KLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEK  200 (372)
Q Consensus       166 ~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~~~~  200 (372)
                      +|++|+.+|++++.++|++..+...+..+...+..
T Consensus        85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~  119 (356)
T PLN03088         85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAE  119 (356)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence            99999999999999999999998888888766643

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.56  E-value=4.9e-14  Score=120.46  Aligned_cols=108  Identities=36%  Similarity=0.610  Sum_probs=101.3

Q ss_pred             hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHH
Q 017383           83 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT------AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSR  156 (372)
Q Consensus        83 ~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~------~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~  156 (372)
                      .+..++..|+-+|+.|+|++|...|..||++.|.      ..+|.|+|.|+++++.++.|+.+|.+||+|+|.+.+++.+
T Consensus        94 kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~R  173 (271)
T KOG4234|consen   94 KADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALER  173 (271)
T ss_pred             HHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHH
Confidence            4456889999999999999999999999999987      7789999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHH
Q 017383          157 RATARKELGKLKESIEDSEFALRLEPQNQEIKKQ  190 (372)
Q Consensus       157 lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~  190 (372)
                      ++.+|..+.+|++|+.+|.+++.++|...+++..
T Consensus       174 RAeayek~ek~eealeDyKki~E~dPs~~ear~~  207 (271)
T KOG4234|consen  174 RAEAYEKMEKYEEALEDYKKILESDPSRREAREA  207 (271)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHH
Confidence            9999999999999999999999999998776543

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.56  E-value=1.3e-13  Score=129.93  Aligned_cols=127  Identities=20%  Similarity=0.160  Sum_probs=116.6

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCc--hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTP--DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEA  136 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~--~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA  136 (372)
                      ..+..+.++..+.++|...+..+  .+..++.+|.+|...|++++|+..|+++++++|+ +.+|+++|.++..+|++++|
T Consensus        38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A  117 (296)
T PRK11189         38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAA  117 (296)
T ss_pred             CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHH
Confidence            34677889999999997544332  3567889999999999999999999999999999 99999999999999999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHH
Q 017383          137 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE  186 (372)
Q Consensus       137 ~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~  186 (372)
                      +..|+++++++|++..+|+++|.++...|++++|+.+|++++.++|+++.
T Consensus       118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~  167 (296)
T PRK11189        118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY  167 (296)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            99999999999999999999999999999999999999999999999873

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.55  E-value=6.3e-14  Score=138.15  Aligned_cols=176  Identities=16%  Similarity=0.166  Sum_probs=146.0

Q ss_pred             HHHhhHHHHHHHHHHHHHHhhhcCCCCCccccccccccCCCCCCCC-CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHH
Q 017383           14 GFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGN   92 (372)
Q Consensus        14 ~~~~~l~~~e~~ik~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~   92 (372)
                      +++-=.++.+.+|+.-...+.-.+   + ..+     +....|..+ ...+|+.|..+|+.||..+|.+..|  |+.+|.
T Consensus       429 NcfSLQkdh~~Aik~f~RAiQldp---~-faY-----ayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnA--wYGlG~  497 (638)
T KOG1126|consen  429 NCFSLQKDHDTAIKCFKRAIQLDP---R-FAY-----AYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNA--WYGLGT  497 (638)
T ss_pred             chhhhhhHHHHHHHHHHHhhccCC---c-cch-----hhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHH--HHhhhh
Confidence            333334455556665555443332   0 000     113344444 5679999999999999999995555  789999


Q ss_pred             HHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 017383           93 ECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESI  171 (372)
Q Consensus        93 ~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~  171 (372)
                      +|.++++++.|.-+|++|++++|. ..+...+|..+.++|+.++|+..+++|+.++|.++-..+.+|.+++.++++++|+
T Consensus       498 vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal  577 (638)
T KOG1126|consen  498 VYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEAL  577 (638)
T ss_pred             heeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHH
Confidence            999999999999999999999998 8888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHccCCCcHHHHHHHHHHHHHHHH
Q 017383          172 EDSEFALRLEPQNQEIKKQLAEVKSLYEK  200 (372)
Q Consensus       172 ~~~~~al~l~P~~~~~~~~l~~a~~~~~~  200 (372)
                      ..+++.-.+-|++..++..++++.+.+++
T Consensus       578 ~~LEeLk~~vP~es~v~~llgki~k~~~~  606 (638)
T KOG1126|consen  578 QELEELKELVPQESSVFALLGKIYKRLGN  606 (638)
T ss_pred             HHHHHHHHhCcchHHHHHHHHHHHHHHcc
Confidence            99999999999999998888888777664

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.55  E-value=1.3e-13  Score=129.89  Aligned_cols=121  Identities=20%  Similarity=0.115  Sum_probs=101.1

Q ss_pred             CCCC-CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCH
Q 017383           56 PSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRF  133 (372)
Q Consensus        56 ~~~y-~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~  133 (372)
                      |..| ..|++++|+..|.++++.+|+++.+  ++.+|.++...|+|++|+.+|+++++++|+ ..++.++|.++...|++
T Consensus        71 g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a--~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~  148 (296)
T PRK11189         71 GVLYDSLGLRALARNDFSQALALRPDMADA--YNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRY  148 (296)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHcCCCCHHH--HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence            3444 7799999999999999999996555  779999999999999999999999999999 99999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 017383          134 QEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALR  179 (372)
Q Consensus       134 ~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~  179 (372)
                      ++|+.+|+++++++|+++.....+ ......+++++|+..|.+++.
T Consensus       149 ~eA~~~~~~al~~~P~~~~~~~~~-~l~~~~~~~~~A~~~l~~~~~  193 (296)
T PRK11189        149 ELAQDDLLAFYQDDPNDPYRALWL-YLAESKLDPKQAKENLKQRYE  193 (296)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHH-HHHHccCCHHHHHHHHHHHHh
Confidence            999999999999999986321111 123446677777777765543

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.54  E-value=2e-13  Score=146.15  Aligned_cols=125  Identities=10%  Similarity=0.011  Sum_probs=117.1

Q ss_pred             CCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHH
Q 017383           61 YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDD  139 (372)
Q Consensus        61 ~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~  139 (372)
                      .|++++|+..|++++..+|+ ..  .+.++|.++.+.|++++|+.+|++++.++|+ +.++.++|.++..+|++++|+..
T Consensus       589 ~Gr~~eAl~~~~~AL~l~P~-~~--a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~  665 (987)
T PRK09782        589 PGQPELALNDLTRSLNIAPS-AN--AYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREM  665 (987)
T ss_pred             CCCHHHHHHHHHHHHHhCCC-HH--HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            49999999999999999995 44  4779999999999999999999999999999 99999999999999999999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHH
Q 017383          140 CTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK  188 (372)
Q Consensus       140 ~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~  188 (372)
                      |++|++++|+++.+++++|.++..+|++++|+.+|++++.++|++..+.
T Consensus       666 l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~  714 (987)
T PRK09782        666 LERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALIT  714 (987)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhh
Confidence            9999999999999999999999999999999999999999999987664

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.53  E-value=4.4e-13  Score=112.08  Aligned_cols=116  Identities=9%  Similarity=-0.025  Sum_probs=103.5

Q ss_pred             hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 017383           83 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATAR  161 (372)
Q Consensus        83 ~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~  161 (372)
                      ....++.+|..++..|++++|...|+-...++|. ...|++||.|+..+|+|.+|+..|.+|+.++|+++.++++.|.++
T Consensus        34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~  113 (157)
T PRK15363         34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY  113 (157)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence            4445789999999999999999999999999998 999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHH
Q 017383          162 KELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLY  198 (372)
Q Consensus       162 ~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~~  198 (372)
                      ..+|+.+.|...|+.++...-.+++......+|...+
T Consensus       114 L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~L  150 (157)
T PRK15363        114 LACDNVCYAIKALKAVVRICGEVSEHQILRQRAEKML  150 (157)
T ss_pred             HHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHH
Confidence            9999999999999999998865555444444444433

>PRK12370 invasion protein regulator; Provisional

Probab=99.52  E-value=2.2e-13  Score=139.08  Aligned_cols=126  Identities=10%  Similarity=-0.000  Sum_probs=114.6

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHh---------hcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQ---------KKFKEAIDCYSRSIALSPT-AVAYANRAMAYLK  129 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~---------g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~  129 (372)
                      ..+++++|+.+|+++++++|++..+  +..+|.+|...         +++++|+..++++++++|+ +.++..+|.++..
T Consensus       273 ~~~~~~~A~~~~~~Al~ldP~~a~a--~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~  350 (553)
T PRK12370        273 TPYSLQQALKLLTQCVNMSPNSIAP--YCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTI  350 (553)
T ss_pred             CHHHHHHHHHHHHHHHhcCCccHHH--HHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            3456789999999999999996555  55888877644         4589999999999999999 9999999999999


Q ss_pred             hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHH
Q 017383          130 LRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI  187 (372)
Q Consensus       130 ~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~  187 (372)
                      .|++++|+..|++|++++|+++.+++.+|.++...|++++|+..|+++++++|.+..+
T Consensus       351 ~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~  408 (553)
T PRK12370        351 HSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAA  408 (553)
T ss_pred             ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhh
Confidence            9999999999999999999999999999999999999999999999999999998654

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.52  E-value=1.5e-13  Score=120.23  Aligned_cols=131  Identities=17%  Similarity=0.096  Sum_probs=120.3

Q ss_pred             CCCC-CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCH
Q 017383           56 PSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRF  133 (372)
Q Consensus        56 ~~~y-~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~  133 (372)
                      |..| ..||+..|...++++|+.+|+...+  |..++.+|.+.|+.+.|-+.|++|+.++|+ .++++|.|.-++.+|+|
T Consensus        42 al~YL~~gd~~~A~~nlekAL~~DPs~~~a--~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~  119 (250)
T COG3063          42 ALGYLQQGDYAQAKKNLEKALEHDPSYYLA--HLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRP  119 (250)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCcccHHH--HHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCCh
Confidence            3345 8899999999999999999997666  559999999999999999999999999999 99999999999999999


Q ss_pred             HHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHH
Q 017383          134 QEAEDDCTEALNL--DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK  188 (372)
Q Consensus       134 ~eA~~~~~~Al~l--~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~  188 (372)
                      ++|...|++|+..  .+..+.+|-|+|.|-.+.|+.+.|..+|+++|.++|+++...
T Consensus       120 ~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~  176 (250)
T COG3063         120 EEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPAL  176 (250)
T ss_pred             HHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHH
Confidence            9999999999984  355688999999999999999999999999999999997754

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.52  E-value=1.3e-13  Score=115.84  Aligned_cols=105  Identities=13%  Similarity=0.080  Sum_probs=98.2

Q ss_pred             CCCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 017383           59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE  137 (372)
Q Consensus        59 y~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~  137 (372)
                      +..|++++|+..|.+++..+|.+..+  +..+|.++...|+|++|+.+|++++.++|+ +.+++++|.|+..+|++++|+
T Consensus        35 ~~~g~~~~A~~~~~~al~~~P~~~~a--~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi  112 (144)
T PRK15359         35 WQEGDYSRAVIDFSWLVMAQPWSWRA--HIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAR  112 (144)
T ss_pred             HHcCCHHHHHHHHHHHHHcCCCcHHH--HHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHH
Confidence            37899999999999999999995555  779999999999999999999999999998 999999999999999999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 017383          138 DDCTEALNLDDRYIKAYSRRATARKELG  165 (372)
Q Consensus       138 ~~~~~Al~l~p~~~~a~~~lg~~~~~lg  165 (372)
                      ..|.+++.++|+++..+.++|.+...++
T Consensus       113 ~~~~~Al~~~p~~~~~~~~~~~~~~~l~  140 (144)
T PRK15359        113 EAFQTAIKMSYADASWSEIRQNAQIMVD  140 (144)
T ss_pred             HHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence            9999999999999999999998876553

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.52  E-value=1.4e-13  Score=126.26  Aligned_cols=217  Identities=20%  Similarity=0.229  Sum_probs=163.5

Q ss_pred             hHHHHHHHHhhHHHHHHHHHHHHHHhhhcCCCCCccccccccccC----------CCCCCCCCCCCchhhHHHHHhhhhc
Q 017383            8 QALDFQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAK----------KPSPSGNSYSRNYDPVSHISSSLMN   77 (372)
Q Consensus         8 n~~~l~~~~~~l~~~e~~ik~~~~~l~~~~~~~~~~~~~~~~~~~----------~~~~~~y~~g~~~~A~~~~~~al~~   77 (372)
                      |+.++-+-+-++.-|.-.+.......--........+.+.+...+          ....-.|..|+.+.++.....+|++
T Consensus       173 ~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl  252 (504)
T KOG0624|consen  173 NAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL  252 (504)
T ss_pred             hHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc
Confidence            455555666666777777665444332221122222222222222          1111126889999999999999999


Q ss_pred             CCCCchHHHH----------HHHHHHHHHhhcHHHHHHHHHHHHccCCC-----HHHHHHHHHHHHHhcCHHHHHHHHHH
Q 017383           78 EESTPDATSE----------KELGNECFKQKKFKEAIDCYSRSIALSPT-----AVAYANRAMAYLKLRRFQEAEDDCTE  142 (372)
Q Consensus        78 ~p~~~~a~~~----------~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-----~~~~~~la~~~~~~g~~~eA~~~~~~  142 (372)
                      +|++.....+          ..-+......++|.++++.+++.++.+|.     ...+..++.|+..-+++.+|+..|.+
T Consensus       253 dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~e  332 (504)
T KOG0624|consen  253 DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKE  332 (504)
T ss_pred             CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHH
Confidence            9997544322          12344566789999999999999999998     34456678999999999999999999


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHH----------HHhhhhhHH-H
Q 017383          143 ALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKE----------VFQKASKTL-E  211 (372)
Q Consensus       143 Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~~~~~----------~~~~~~~~~-~  211 (372)
                      +|.++|+++.++..++.+|..-..|+.|+.+|++|+.++++|..++..++.|.++..++          +.++++... -
T Consensus       333 vL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs~kRDYYKILGVkRnAsKqEI~  412 (504)
T KOG0624|consen  333 VLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQSGKRDYYKILGVKRNASKQEIT  412 (504)
T ss_pred             HHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHhccchHHHHhhhcccccHHHHH
Confidence            99999999999999999999999999999999999999999999999999998877764          344444433 6


Q ss_pred             HhccccchhcChh
Q 017383          212 KYGKSGMKVNGHE  224 (372)
Q Consensus       212 ~~~~~~~~~~~~~  224 (372)
                      ++||+.+..|||+
T Consensus       413 KAYRKlAqkWHPD  425 (504)
T KOG0624|consen  413 KAYRKLAQKWHPD  425 (504)
T ss_pred             HHHHHHHHhcCCc
Confidence            8999999999986

>PRK12370 invasion protein regulator; Provisional

Probab=99.51  E-value=2.7e-13  Score=138.52  Aligned_cols=134  Identities=13%  Similarity=0.023  Sum_probs=120.5

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~  138 (372)
                      ..+++++|+..++++++++|+++.+  +..+|.++...|++++|+.+|+++++++|+ +.+++++|.++..+|++++|+.
T Consensus       316 ~~~~~~~A~~~~~~Al~ldP~~~~a--~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~  393 (553)
T PRK12370        316 KQNAMIKAKEHAIKATELDHNNPQA--LGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQ  393 (553)
T ss_pred             cchHHHHHHHHHHHHHhcCCCCHHH--HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            4567899999999999999996665  668999999999999999999999999999 9999999999999999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC-CCcHHHHHHHHHHH
Q 017383          139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLE-PQNQEIKKQLAEVK  195 (372)
Q Consensus       139 ~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~-P~~~~~~~~l~~a~  195 (372)
                      .++++++++|.++.+++.++.+++..|++++|+..+++++... |+++.++..++.+.
T Consensus       394 ~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l  451 (553)
T PRK12370        394 TINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFL  451 (553)
T ss_pred             HHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHH
Confidence            9999999999999888888888888999999999999999875 77777665555443

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.49  E-value=1.1e-12  Score=116.78  Aligned_cols=128  Identities=19%  Similarity=0.138  Sum_probs=103.6

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCC--C-HHHHHHHHHHHHHhcCHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSP--T-AVAYANRAMAYLKLRRFQEA  136 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p--~-~~~~~~la~~~~~~g~~~eA  136 (372)
                      ..|++++|+..|.+++...|.+..+  +..+|.+++..|++++|+.+|.+++...+  . ...+.++|.++...|++++|
T Consensus        77 ~~~~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  154 (234)
T TIGR02521        77 QLGELEKAEDSFRRALTLNPNNGDV--LNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKA  154 (234)
T ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHH--HHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHH
Confidence            6788888888888888888775444  66888888888888888888888887542  2 66778888888888888888


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHH
Q 017383          137 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKK  189 (372)
Q Consensus       137 ~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~  189 (372)
                      +..|.+++..+|++..++..+|.++...|++++|...+++++.+.|.+...+.
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  207 (234)
T TIGR02521       155 EKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLW  207 (234)
T ss_pred             HHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            88888888888888888888888888888888888888888888777665544

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.48  E-value=9e-13  Score=141.10  Aligned_cols=147  Identities=16%  Similarity=0.118  Sum_probs=131.0

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHhcCHHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDD  139 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~~la~~~~~~g~~~eA~~~  139 (372)
                      ..|++++|+.+|.+++..+|.....  +..++..+...|++++|+.+|+++++++|+..++.++|.++.++|++++|+..
T Consensus       554 ~~Gd~~eA~~~l~qAL~l~P~~~~l--~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~  631 (987)
T PRK09782        554 AAGNGAARDRWLQQAEQRGLGDNAL--YWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSD  631 (987)
T ss_pred             HCCCHHHHHHHHHHHHhcCCccHHH--HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            6789999999999999998875433  34566666777999999999999999999988999999999999999999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHH----------HHHHHHHHHHHHHHHhhhhh
Q 017383          140 CTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK----------KQLAEVKSLYEKEVFQKASK  208 (372)
Q Consensus       140 ~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~----------~~l~~a~~~~~~~~~~~~~~  208 (372)
                      |++++.++|+++.+++++|.++...|++++|+..|+++++++|+++.++          +.+.+|...|++++...+..
T Consensus       632 l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~  710 (987)
T PRK09782        632 LRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ  710 (987)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence            9999999999999999999999999999999999999999999999875          45667777888887777654

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.47  E-value=2.6e-12  Score=114.40  Aligned_cols=133  Identities=14%  Similarity=0.167  Sum_probs=120.1

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~  138 (372)
                      ..|++++|+..+++++..+|.+..  .+..+|.+++..|++++|+..|++++..+|. ..++.++|.++...|++++|+.
T Consensus        43 ~~~~~~~A~~~~~~~l~~~p~~~~--~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~  120 (234)
T TIGR02521        43 EQGDLEVAKENLDKALEHDPDDYL--AYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQ  120 (234)
T ss_pred             HCCCHHHHHHHHHHHHHhCcccHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHH
Confidence            779999999999999999988544  4678999999999999999999999999998 8899999999999999999999


Q ss_pred             HHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHH
Q 017383          139 DCTEALNLD--DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV  194 (372)
Q Consensus       139 ~~~~Al~l~--p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a  194 (372)
                      .+.+++...  +.....++.+|.++...|++++|...|.+++..+|++..++..+..+
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~  178 (234)
T TIGR02521       121 QFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAEL  178 (234)
T ss_pred             HHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHH
Confidence            999999864  55678899999999999999999999999999999987776544443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.45  E-value=2e-12  Score=134.56  Aligned_cols=146  Identities=13%  Similarity=0.145  Sum_probs=115.9

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHH----HHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKE----AIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQ  134 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~----Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~  134 (372)
                      ..|++++|+..|.+++..+|++..  .+..+|..++..|++++    |+.+|++++.++|+ ..++.++|.++...|+++
T Consensus       224 ~~g~~~eA~~~~~~al~~~p~~~~--~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~  301 (656)
T PRK15174        224 AVGKYQEAIQTGESALARGLDGAA--LRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNE  301 (656)
T ss_pred             HCCCHHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHH
Confidence            568888888888888888887444  46688888888888875    78888888888888 888888888888888888


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHH----------HHHHHHHHHHHHHHHh
Q 017383          135 EAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK----------KQLAEVKSLYEKEVFQ  204 (372)
Q Consensus       135 eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~----------~~l~~a~~~~~~~~~~  204 (372)
                      +|+..+++++.++|+++.++..+|.++..+|++++|+..|++++..+|++....          +...+|...|++++..
T Consensus       302 eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~  381 (656)
T PRK15174        302 KAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA  381 (656)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            888888888888888888888888888888888888888888888888775432          3456666666666665


Q ss_pred             hhh
Q 017383          205 KAS  207 (372)
Q Consensus       205 ~~~  207 (372)
                      .+.
T Consensus       382 ~P~  384 (656)
T PRK15174        382 RAS  384 (656)
T ss_pred             Chh
Confidence            543

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.45  E-value=1.5e-12  Score=135.34  Aligned_cols=140  Identities=15%  Similarity=0.106  Sum_probs=123.9

Q ss_pred             CCCCchh----hHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHH
Q 017383           60 SYSRNYD----PVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQ  134 (372)
Q Consensus        60 ~~g~~~~----A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~  134 (372)
                      ..|++++    |+..|++++..+|++..  ++..+|.++...|++++|+.+|++++.++|+ ..++.++|.+|..+|+++
T Consensus       258 ~~G~~~eA~~~A~~~~~~Al~l~P~~~~--a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~  335 (656)
T PRK15174        258 QSGRSREAKLQAAEHWRHALQFNSDNVR--IVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYT  335 (656)
T ss_pred             HcCCchhhHHHHHHHHHHHHhhCCCCHH--HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence            6788886    89999999999999554  4679999999999999999999999999999 889999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHH
Q 017383          135 EAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVF  203 (372)
Q Consensus       135 eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~~~~~~~  203 (372)
                      +|+..|++++..+|++..++..+|.++..+|++++|+..|++++.++|++.  ...+.++...|.+++.
T Consensus       336 eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~--~~~~~ea~~~~~~~~~  402 (656)
T PRK15174        336 AASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL--PQSFEEGLLALDGQIS  402 (656)
T ss_pred             HHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc--hhhHHHHHHHHHHHHH
Confidence            999999999999999998888899999999999999999999999999864  2444455555555433

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.45  E-value=5.4e-13  Score=121.01  Aligned_cols=120  Identities=18%  Similarity=0.248  Sum_probs=107.5

Q ss_pred             CCCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 017383           59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE  137 (372)
Q Consensus        59 y~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~  137 (372)
                      +..++|.+|+..|.+||.++|.  .+..|.+++.+|.++|.|+.|+..++.||.+||+ ..+|..+|.+|+.+|+|++|+
T Consensus        92 m~~~~Y~eAv~kY~~AI~l~P~--nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~  169 (304)
T KOG0553|consen   92 MKNKDYQEAVDKYTEAIELDPT--NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI  169 (304)
T ss_pred             HHhhhHHHHHHHHHHHHhcCCC--cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence            4779999999999999999999  5555779999999999999999999999999999 999999999999999999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH---HHHHHHHHHHcc
Q 017383          138 DDCTEALNLDDRYIKAYSRRATARKELGKLK---ESIEDSEFALRL  180 (372)
Q Consensus       138 ~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~---~A~~~~~~al~l  180 (372)
                      +.|.+||.++|++...+.+|..+...++...   .+...++.+..+
T Consensus       170 ~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~i  215 (304)
T KOG0553|consen  170 EAYKKALELDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLI  215 (304)
T ss_pred             HHHHhhhccCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhc
Confidence            9999999999999999999999999888776   444445444433

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.42  E-value=3.7e-12  Score=121.02  Aligned_cols=126  Identities=19%  Similarity=0.148  Sum_probs=119.1

Q ss_pred             CCCCCCC-CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHh
Q 017383           53 KPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKL  130 (372)
Q Consensus        53 ~~~~~~y-~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~  130 (372)
                      ..+|..| .+.+...|++.|++|++++|.  +-.+|+.+|..|--++-..=|+-+|++|+.+.|+ ...|..+|.||.++
T Consensus       368 TLmGHEyvEmKNt~AAi~sYRrAvdi~p~--DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl  445 (559)
T KOG1155|consen  368 TLMGHEYVEMKNTHAAIESYRRAVDINPR--DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKL  445 (559)
T ss_pred             HHhhHHHHHhcccHHHHHHHHHHHhcCch--hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHh
Confidence            6677777 889999999999999999999  5555889999999999999999999999999999 99999999999999


Q ss_pred             cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 017383          131 RRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRL  180 (372)
Q Consensus       131 g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l  180 (372)
                      ++.++|+.+|.+|+........+++++|.+|.+++++++|..+|++.+..
T Consensus       446 ~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~  495 (559)
T KOG1155|consen  446 NRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEV  495 (559)
T ss_pred             ccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999984

>PLN02789 farnesyltranstransferase

Probab=99.40  E-value=8.5e-12  Score=118.21  Aligned_cols=135  Identities=16%  Similarity=0.065  Sum_probs=123.0

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhh-cHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCH--HH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQK-KFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRF--QE  135 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g-~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~--~e  135 (372)
                      ..+.+++|+..+.++|.++|.+..+  +..+|.++...| ++++|+.++++++..+|+ ..+|+.++.++.++|+.  ++
T Consensus        49 ~~e~serAL~lt~~aI~lnP~~yta--W~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~  126 (320)
T PLN02789         49 SDERSPRALDLTADVIRLNPGNYTV--WHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANK  126 (320)
T ss_pred             cCCCCHHHHHHHHHHHHHCchhHHH--HHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHH
Confidence            4578899999999999999996655  668899999998 689999999999999999 89999999999999974  78


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHH
Q 017383          136 AEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS  196 (372)
Q Consensus       136 A~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~  196 (372)
                      ++.++.+++.++|.+..+|..+|.++..+|++++|+.++.++|+++|.|..++....-+..
T Consensus       127 el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~  187 (320)
T PLN02789        127 ELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVIT  187 (320)
T ss_pred             HHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999999999999999876665543

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.39  E-value=2.5e-12  Score=124.34  Aligned_cols=109  Identities=36%  Similarity=0.543  Sum_probs=105.5

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 017383           87 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG  165 (372)
Q Consensus        87 ~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg  165 (372)
                      ++..|+..+..|+|+.|+.+|..+|.++|. ...|.|+..||..+|+|.+|+.+..++++++|+.+++|.++|.++..+|
T Consensus         5 ~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg   84 (539)
T KOG0548|consen    5 LKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLG   84 (539)
T ss_pred             HHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcc
Confidence            567899999999999999999999999998 9999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHccCCCcHHHHHHHHHHH
Q 017383          166 KLKESIEDSEFALRLEPQNQEIKKQLAEVK  195 (372)
Q Consensus       166 ~~~~A~~~~~~al~l~P~~~~~~~~l~~a~  195 (372)
                      +|++|+..|.++|+++|+|......+.++.
T Consensus        85 ~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~  114 (539)
T KOG0548|consen   85 DYEEAILAYSEGLEKDPSNKQLKTGLAQAY  114 (539)
T ss_pred             cHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence            999999999999999999999998888887

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.39  E-value=6.2e-12  Score=138.84  Aligned_cols=96  Identities=15%  Similarity=0.165  Sum_probs=48.7

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchH------------HHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDA------------TSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMA  126 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a------------~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~  126 (372)
                      ..|++++|+.+|+++++.+|++...            +....+|.++...|++++|+.+|++++.++|+ ..++..+|.+
T Consensus       315 ~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~  394 (1157)
T PRK11447        315 QQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDV  394 (1157)
T ss_pred             HcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            4455555555555555555543221            11123344555555555555555555555554 4555555555


Q ss_pred             HHHhcCHHHHHHHHHHHHhcCCCCHHHHH
Q 017383          127 YLKLRRFQEAEDDCTEALNLDDRYIKAYS  155 (372)
Q Consensus       127 ~~~~g~~~eA~~~~~~Al~l~p~~~~a~~  155 (372)
                      +..+|++++|+..|+++++++|++..++.
T Consensus       395 ~~~~g~~~eA~~~y~~aL~~~p~~~~a~~  423 (1157)
T PRK11447        395 AMARKDYAAAERYYQQALRMDPGNTNAVR  423 (1157)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            55555555555555555555555544433

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.38  E-value=1e-11  Score=108.74  Aligned_cols=136  Identities=18%  Similarity=0.135  Sum_probs=120.0

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC----HHHHHHHHHHHHHhcCHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQE  135 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~~la~~~~~~g~~~e  135 (372)
                      ..|+.+.|.+.|++++.++|++.+.  +++.|..++.+|+|++|..+|++|+. +|.    +..|.|+|.|.+++|+++.
T Consensus        81 ~~Ge~~~A~e~YrkAlsl~p~~GdV--LNNYG~FLC~qg~~~eA~q~F~~Al~-~P~Y~~~s~t~eN~G~Cal~~gq~~~  157 (250)
T COG3063          81 KLGENDLADESYRKALSLAPNNGDV--LNNYGAFLCAQGRPEEAMQQFERALA-DPAYGEPSDTLENLGLCALKAGQFDQ  157 (250)
T ss_pred             HcCChhhHHHHHHHHHhcCCCccch--hhhhhHHHHhCCChHHHHHHHHHHHh-CCCCCCcchhhhhhHHHHhhcCCchh
Confidence            6799999999999999999996555  88999999999999999999999997 454    8999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHH
Q 017383          136 AEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLY  198 (372)
Q Consensus       136 A~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~~  198 (372)
                      |..+|+++|+++|+++.+...++..++..|+|..|...++....-.+-..+......++.+.+
T Consensus       158 A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~  220 (250)
T COG3063         158 AEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRL  220 (250)
T ss_pred             HHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999998877776555443333333333

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.37  E-value=8.7e-12  Score=119.23  Aligned_cols=145  Identities=17%  Similarity=0.198  Sum_probs=132.2

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~  138 (372)
                      -.|++-.|...++.++.++|.....  |..+|..|....+-++-...|.+|..+||. +++|+.||..++-+++|++|+.
T Consensus       338 L~g~~~~a~~d~~~~I~l~~~~~~l--yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~a  415 (606)
T KOG0547|consen  338 LKGDSLGAQEDFDAAIKLDPAFNSL--YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIA  415 (606)
T ss_pred             hcCCchhhhhhHHHHHhcCcccchH--HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHH
Confidence            6699999999999999999987666  568999999999999999999999999998 9999999999999999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHH----------HHHHHHHHHHHHHHHhhh
Q 017383          139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK----------KQLAEVKSLYEKEVFQKA  206 (372)
Q Consensus       139 ~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~----------~~l~~a~~~~~~~~~~~~  206 (372)
                      +|++|+.|+|+++-+|..++.+.++.++++++...|+.+.+..|+.+++.          +.+..|.+.|.+++...+
T Consensus       416 DF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~  493 (606)
T KOG0547|consen  416 DFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP  493 (606)
T ss_pred             HHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence            99999999999999999999999999999999999999999999999885          455556666666665554

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.36  E-value=1.3e-11  Score=118.16  Aligned_cols=148  Identities=18%  Similarity=0.250  Sum_probs=135.0

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~  138 (372)
                      +..+-++-...|.++..++|.+++.  |+.+|.+++-.++|++|+..|++++.++|. +.+|..+|.+.++++++.+++.
T Consensus       372 d~~~~~~~~~~F~~A~~ldp~n~dv--YyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~  449 (606)
T KOG0547|consen  372 DENQSEKMWKDFNKAEDLDPENPDV--YYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMK  449 (606)
T ss_pred             hhhccHHHHHHHHHHHhcCCCCCch--hHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            6678888899999999999997777  778999999999999999999999999999 9999999999999999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC------cHHH-----------HHHHHHHHHHHHHH
Q 017383          139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQ------NQEI-----------KKQLAEVKSLYEKE  201 (372)
Q Consensus       139 ~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~------~~~~-----------~~~l~~a~~~~~~~  201 (372)
                      .|+.++...|+.+.+|...|.++...++++.|++.|.+|+.|.|.      +...           .+.+..+..++.++
T Consensus       450 ~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA  529 (606)
T KOG0547|consen  450 TFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKA  529 (606)
T ss_pred             HHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999998      3221           36788888899998


Q ss_pred             HHhhhhhH
Q 017383          202 VFQKASKT  209 (372)
Q Consensus       202 ~~~~~~~~  209 (372)
                      +..+|.-.
T Consensus       530 ~e~Dpkce  537 (606)
T KOG0547|consen  530 IELDPKCE  537 (606)
T ss_pred             HccCchHH
Confidence            88887443

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.36  E-value=2.2e-11  Score=105.51  Aligned_cols=115  Identities=20%  Similarity=0.217  Sum_probs=96.4

Q ss_pred             HHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 017383           70 HISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALN  145 (372)
Q Consensus        70 ~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~~la~~~~~~g~~~eA~~~~~~Al~  145 (372)
                      .+...+..++....+..++.+|..+...|++++|+.+|++++.+.|+    ..++.++|.++..+|++++|+..+.+++.
T Consensus        21 ~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  100 (172)
T PRK02603         21 LILKILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE  100 (172)
T ss_pred             HHHHHcccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34455555655567778999999999999999999999999988765    57899999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCH--------------HHHHHHHHHHHccCCCc
Q 017383          146 LDDRYIKAYSRRATARKELGKL--------------KESIEDSEFALRLEPQN  184 (372)
Q Consensus       146 l~p~~~~a~~~lg~~~~~lg~~--------------~~A~~~~~~al~l~P~~  184 (372)
                      ++|.+..++..+|.++..+|+.              ++|+..+++++.++|++
T Consensus       101 ~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        101 LNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             hCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence            9999999999999999999984              45555555555555544

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.36  E-value=2.2e-11  Score=125.97  Aligned_cols=139  Identities=9%  Similarity=-0.017  Sum_probs=123.4

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~  138 (372)
                      ..|.+++|...++.++.+.|++..+  +.++|.++.+.+++++|+..+++++..+|+ +.+++.+|.++..+|+|++|+.
T Consensus        98 ~~g~~~ea~~~l~~~~~~~Pd~~~a--~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~  175 (694)
T PRK15179         98 AAHRSDEGLAVWRGIHQRFPDSSEA--FILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADA  175 (694)
T ss_pred             HcCCcHHHHHHHHHHHhhCCCcHHH--HHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHH
Confidence            6799999999999999999996666  559999999999999999999999999999 9999999999999999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHH----HHHHHHHHHHHHH
Q 017383          139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----KKQLAEVKSLYEK  200 (372)
Q Consensus       139 ~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~----~~~l~~a~~~~~~  200 (372)
                      .|++++..+|++..++..+|.++..+|+.++|...|++++.....-...    ...+......|++
T Consensus       176 ~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (694)
T PRK15179        176 CFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLVDLNADLAALRR  241 (694)
T ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999987544332    2344444444443

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.36  E-value=2.7e-11  Score=111.07  Aligned_cols=107  Identities=36%  Similarity=0.564  Sum_probs=98.8

Q ss_pred             chHHHHHHHHHHHHHhhcHHHHHHHHHHHHccC---CC--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHH
Q 017383           82 PDATSEKELGNECFKQKKFKEAIDCYSRSIALS---PT--AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSR  156 (372)
Q Consensus        82 ~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~---p~--~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~  156 (372)
                      ..|..++.-||.||+.++|..|+.+|.++|+..   |+  +.+|.|||.|.+.+|+|..|+.+|++|+.++|.+.+++++
T Consensus        79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R  158 (390)
T KOG0551|consen   79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIR  158 (390)
T ss_pred             HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhh
Confidence            367779999999999999999999999999964   44  8899999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHccCCCcHHHH
Q 017383          157 RATARKELGKLKESIEDSEFALRLEPQNQEIK  188 (372)
Q Consensus       157 lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~  188 (372)
                      -+.|+..+.++++|..+++..+.++-....+.
T Consensus       159 ~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~~  190 (390)
T KOG0551|consen  159 GAKCLLELERFAEAVNWCEEGLQIDDEAKKAI  190 (390)
T ss_pred             hhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence            99999999999999999999988887666554

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.35  E-value=2.8e-11  Score=104.35  Aligned_cols=128  Identities=16%  Similarity=0.071  Sum_probs=107.1

Q ss_pred             CCCCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC----HHHHHHHHHHHHHhcCH
Q 017383           58 GNSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRF  133 (372)
Q Consensus        58 ~y~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~~la~~~~~~g~~  133 (372)
                      .|-...|..+...+...++..+....+..++.+|.++...|+|++|+.+|.+++.+.|+    +.++.++|.++..+|++
T Consensus         9 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~   88 (168)
T CHL00033          9 NFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEH   88 (168)
T ss_pred             cccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCH
Confidence            34455677788888777777777677888999999999999999999999999988765    56899999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHH-------HcCCHH-------HHHHHHHHHHccCCCcH
Q 017383          134 QEAEDDCTEALNLDDRYIKAYSRRATARK-------ELGKLK-------ESIEDSEFALRLEPQNQ  185 (372)
Q Consensus       134 ~eA~~~~~~Al~l~p~~~~a~~~lg~~~~-------~lg~~~-------~A~~~~~~al~l~P~~~  185 (372)
                      ++|+..|++++.++|.+..++.++|.++.       .+|+++       +|+..|++++.++|.+.
T Consensus        89 ~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~  154 (168)
T CHL00033         89 TKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY  154 (168)
T ss_pred             HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence            99999999999999999999999999999       667766       45555556666666543

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.35  E-value=4.2e-12  Score=123.70  Aligned_cols=121  Identities=17%  Similarity=0.229  Sum_probs=110.4

Q ss_pred             CchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHH
Q 017383           63 RNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCT  141 (372)
Q Consensus        63 ~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~  141 (372)
                      .+..-...|..+....|...++.++..+|..|+-.|+|++|+.||+.||...|+ ..+|+.+|.++..-.+.++|+..|+
T Consensus       409 ~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~  488 (579)
T KOG1125|consen  409 HLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYN  488 (579)
T ss_pred             HHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHH
Confidence            344455677777777875556666779999999999999999999999999999 9999999999999999999999999


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 017383          142 EALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQ  183 (372)
Q Consensus       142 ~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~  183 (372)
                      +|++|.|.++.++|++|.++..+|.|++|..+|-.||.+.+.
T Consensus       489 rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k  530 (579)
T KOG1125|consen  489 RALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK  530 (579)
T ss_pred             HHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence            999999999999999999999999999999999999999876

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.34  E-value=2.3e-11  Score=118.52  Aligned_cols=122  Identities=17%  Similarity=0.097  Sum_probs=61.8

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC------HHHHHHHHHHHHHhcCH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT------AVAYANRAMAYLKLRRF  133 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~------~~~~~~la~~~~~~g~~  133 (372)
                      ..|++++|+..|.++++.+|..  ..++..+|.++...|+|++|+..|.+++...|.      ...+.++|.++...|++
T Consensus       119 ~~g~~~~A~~~~~~~l~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~  196 (389)
T PRK11788        119 KAGLLDRAEELFLQLVDEGDFA--EGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDL  196 (389)
T ss_pred             HCCCHHHHHHHHHHHHcCCcch--HHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCH
Confidence            4455555555555555544432  222345555555555555555555555554433      12334455555555555


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 017383          134 QEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQ  183 (372)
Q Consensus       134 ~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~  183 (372)
                      ++|+..|+++++.+|++..+++.+|.++...|++++|+..|++++..+|.
T Consensus       197 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~  246 (389)
T PRK11788        197 DAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPE  246 (389)
T ss_pred             HHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChh
Confidence            55555555555555555555555555555555555555555555555444

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.34  E-value=6.2e-12  Score=122.12  Aligned_cols=135  Identities=22%  Similarity=0.263  Sum_probs=112.7

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC--------HHHHHHHHHHHHHhc
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT--------AVAYANRAMAYLKLR  131 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~--------~~~~~~la~~~~~~g  131 (372)
                      ..+++.-|..+|.+|+.+.|.++  ..++.+|.+.|..+.|.+|+.+|+.++..-+.        ...+.|+|.++.+++
T Consensus       392 ~t~n~kLAe~Ff~~A~ai~P~Dp--lv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~  469 (611)
T KOG1173|consen  392 RTNNLKLAEKFFKQALAIAPSDP--LVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLN  469 (611)
T ss_pred             HhccHHHHHHHHHHHHhcCCCcc--hhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHh
Confidence            46788888888888888988844  44778899999999999999999998843222        445889999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHH
Q 017383          132 RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS  196 (372)
Q Consensus       132 ~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~  196 (372)
                      .+++|+.+++++|.+.|.++.++..+|.+|..+|+++.|++.|.++|-++|+|.-+...|..+..
T Consensus       470 ~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie  534 (611)
T KOG1173|consen  470 KYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE  534 (611)
T ss_pred             hHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999998777666665443

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.33  E-value=2.5e-11  Score=134.11  Aligned_cols=133  Identities=17%  Similarity=0.197  Sum_probs=119.5

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-H--H------------HHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-A--V------------AYANRA  124 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~--~------------~~~~la  124 (372)
                      ..|++++|+..|+++++.+|.+..+  +..+|.+++..|++++|+.+|+++++++|+ .  .            .+..+|
T Consensus       281 ~~g~~~~A~~~l~~aL~~~P~~~~a--~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g  358 (1157)
T PRK11447        281 DSGQGGKAIPELQQAVRANPKDSEA--LGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQG  358 (1157)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHH
Confidence            6799999999999999999996555  679999999999999999999999999986 2  1            234568


Q ss_pred             HHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHH
Q 017383          125 MAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV  194 (372)
Q Consensus       125 ~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a  194 (372)
                      .+++..|++++|+..|++++.++|++..+++.+|.++...|++++|+..|+++++++|++..++..+..+
T Consensus       359 ~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l  428 (1157)
T PRK11447        359 DAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANL  428 (1157)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999999999999999999999998876554443

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.33  E-value=2.7e-11  Score=110.03  Aligned_cols=139  Identities=19%  Similarity=0.126  Sum_probs=118.1

Q ss_pred             CCCCCchhhHHHHHhhhhcCCCCchH-HHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC----HHHHHHHHHHHHHh---
Q 017383           59 NSYSRNYDPVSHISSSLMNEESTPDA-TSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKL---  130 (372)
Q Consensus        59 y~~g~~~~A~~~~~~al~~~p~~~~a-~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~~la~~~~~~---  130 (372)
                      +..|++++|+..|++++...|.++.. .+++.+|.+++..|++++|+..|+++++.+|+    ..+++.+|.+++..   
T Consensus        44 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~  123 (235)
T TIGR03302        44 LDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDR  123 (235)
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhccc
Confidence            37899999999999999999986532 35789999999999999999999999999997    45799999999987   


Q ss_pred             -----cCHHHHHHHHHHHHhcCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHccCCCcH---
Q 017383          131 -----RRFQEAEDDCTEALNLDDRYIKAY-----------------SRRATARKELGKLKESIEDSEFALRLEPQNQ---  185 (372)
Q Consensus       131 -----g~~~eA~~~~~~Al~l~p~~~~a~-----------------~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~---  185 (372)
                           |++++|+..+++++..+|++..++                 ..+|..+...|++.+|+..|++++...|+.+   
T Consensus       124 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  203 (235)
T TIGR03302       124 VDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATE  203 (235)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchH
Confidence                 899999999999999999985442                 3678889999999999999999999988753   


Q ss_pred             HHHHHHHHHHHH
Q 017383          186 EIKKQLAEVKSL  197 (372)
Q Consensus       186 ~~~~~l~~a~~~  197 (372)
                      +++..+..+...
T Consensus       204 ~a~~~l~~~~~~  215 (235)
T TIGR03302       204 EALARLVEAYLK  215 (235)
T ss_pred             HHHHHHHHHHHH
Confidence            455555555443

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PLN02789 farnesyltranstransferase

Probab=99.32  E-value=3.2e-11  Score=114.35  Aligned_cols=171  Identities=11%  Similarity=0.068  Sum_probs=134.0

Q ss_pred             HhhHHHHHHHHHHHHHHhhhcCCCCCccccccccccCCCCCCCCCCC-CchhhHHHHHhhhhcCCCCchHHHHHHHHHHH
Q 017383           16 LNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGNSYS-RNYDPVSHISSSLMNEESTPDATSEKELGNEC   94 (372)
Q Consensus        16 ~~~l~~~e~~ik~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y~~g-~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~   94 (372)
                      +...+..+.++...++.+...+..-.-...+...+        ..+| ++++++..+.+++..+|++..+  |..+|.++
T Consensus        47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL--------~~L~~~l~eeL~~~~~~i~~npknyqa--W~~R~~~l  116 (320)
T PLN02789         47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCL--------EALDADLEEELDFAEDVAEDNPKNYQI--WHHRRWLA  116 (320)
T ss_pred             HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHH--------HHcchhHHHHHHHHHHHHHHCCcchHH--hHHHHHHH
Confidence            34445566666666666654441111111111111        1445 6799999999999999996666  66889888


Q ss_pred             HHhhcH--HHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc---CCH-
Q 017383           95 FKQKKF--KEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKEL---GKL-  167 (372)
Q Consensus        95 ~~~g~~--~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~l---g~~-  167 (372)
                      ...|+.  ++++.++.++++++|+ ..+|..+|.++..+|+|++|+.+|.++|+++|.+..+|+.+|.++..+   |.+ 
T Consensus       117 ~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~  196 (320)
T PLN02789        117 EKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLE  196 (320)
T ss_pred             HHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccccc
Confidence            888874  7899999999999998 999999999999999999999999999999999999999999998877   333 


Q ss_pred             ---HHHHHHHHHHHccCCCcHHHHHHHHHHHH
Q 017383          168 ---KESIEDSEFALRLEPQNQEIKKQLAEVKS  196 (372)
Q Consensus       168 ---~~A~~~~~~al~l~P~~~~~~~~l~~a~~  196 (372)
                         ++++.+..+++.++|+|..++..+..+..
T Consensus       197 ~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~  228 (320)
T PLN02789        197 AMRDSELKYTIDAILANPRNESPWRYLRGLFK  228 (320)
T ss_pred             ccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHh
Confidence               57888889999999999999977776654

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.31  E-value=3.8e-11  Score=127.75  Aligned_cols=124  Identities=18%  Similarity=0.163  Sum_probs=62.7

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~  138 (372)
                      ..|++++|+..|.+++...|..   ..+..+|.++...|++++|+..+++++..+|+ ..+++.+|.+|..+|++++|+.
T Consensus       715 ~~g~~~~A~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~  791 (899)
T TIGR02917       715 RQKDYPAAIQAYRKALKRAPSS---QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIK  791 (899)
T ss_pred             HCCCHHHHHHHHHHHHhhCCCc---hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence            4455555555555555554442   12334455555555555555555555555544 4455555555555555555555


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHH
Q 017383          139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI  187 (372)
Q Consensus       139 ~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~  187 (372)
                      .|++++..+|+++.++.++|.++...|+ .+|+..+++++.+.|+++..
T Consensus       792 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~  839 (899)
T TIGR02917       792 HYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAI  839 (899)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHH
Confidence            5555555555555555555555555555 44555555555555544443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.30  E-value=1.6e-11  Score=114.67  Aligned_cols=140  Identities=16%  Similarity=0.132  Sum_probs=111.1

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~  138 (372)
                      ..++++++...+.++....+...+...+..+|.++.+.|++++|+.+|+++++++|+ ..+...++.++...|+++++..
T Consensus       122 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~  201 (280)
T PF13429_consen  122 RLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEARE  201 (280)
T ss_dssp             HTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHH
Confidence            567888888888887655432235666778999999999999999999999999998 8888899999999999999888


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHH
Q 017383          139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYE  199 (372)
Q Consensus       139 ~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~~~  199 (372)
                      .+.......|.++..+..+|.++..+|++++|+.+|+++++.+|+|+.+...++.+....+
T Consensus       202 ~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g  262 (280)
T PF13429_consen  202 ALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAG  262 (280)
T ss_dssp             HHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT---
T ss_pred             HHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccc
Confidence            8888888888888888899999999999999999999999999999998887777765444

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.30  E-value=7.2e-11  Score=94.79  Aligned_cols=103  Identities=14%  Similarity=0.150  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHHHccCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---HHHHHHHH
Q 017383           86 SEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY---IKAYSRRA  158 (372)
Q Consensus        86 ~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~---~~a~~~lg  158 (372)
                      .++.+|..++..|+|++|+..|.+++..+|+    ..+++.+|.+++..|++++|+..|+.++..+|++   ..+++.+|
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~   83 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG   83 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence            4679999999999999999999999999886    5789999999999999999999999999999885   67899999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHccCCCcHHHH
Q 017383          159 TARKELGKLKESIEDSEFALRLEPQNQEIK  188 (372)
Q Consensus       159 ~~~~~lg~~~~A~~~~~~al~l~P~~~~~~  188 (372)
                      .++..+|++++|+..|++++...|++..+.
T Consensus        84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~  113 (119)
T TIGR02795        84 MSLQELGDKEKAKATLQQVIKRYPGSSAAK  113 (119)
T ss_pred             HHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence            999999999999999999999999987654

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.28  E-value=8.4e-11  Score=88.45  Aligned_cols=97  Identities=40%  Similarity=0.591  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 017383           87 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG  165 (372)
Q Consensus        87 ~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg  165 (372)
                      ++.+|..++..|++++|+..+.+++...|. ..++..+|.++...|++++|+.+|++++.+.|.+..+++.+|.++...|
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG   82 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence            678999999999999999999999999998 7889999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHccCCC
Q 017383          166 KLKESIEDSEFALRLEPQ  183 (372)
Q Consensus       166 ~~~~A~~~~~~al~l~P~  183 (372)
                      +++.|...+.+++.+.|.
T Consensus        83 ~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          83 KYEEALEAYEKALELDPN  100 (100)
T ss_pred             hHHHHHHHHHHHHccCCC
Confidence            999999999999998874

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.28  E-value=3.1e-11  Score=116.55  Aligned_cols=105  Identities=16%  Similarity=0.177  Sum_probs=97.7

Q ss_pred             CCCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 017383           59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE  137 (372)
Q Consensus        59 y~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~  137 (372)
                      |..|+|++|+.+|.+++..+|.+..+  +..+|.+|+..|+|++|+.++++++.++|+ +.+|+++|.+|+.+|+|++|+
T Consensus        13 ~~~~~~~~Ai~~~~~Al~~~P~~~~a--~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~   90 (356)
T PLN03088         13 FVDDDFALAVDLYTQAIDLDPNNAEL--YADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAK   90 (356)
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHH
Confidence            57799999999999999999996555  679999999999999999999999999998 999999999999999999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 017383          138 DDCTEALNLDDRYIKAYSRRATARKELG  165 (372)
Q Consensus       138 ~~~~~Al~l~p~~~~a~~~lg~~~~~lg  165 (372)
                      .+|++++.++|++..+...++.+...+.
T Consensus        91 ~~~~~al~l~P~~~~~~~~l~~~~~kl~  118 (356)
T PLN03088         91 AALEKGASLAPGDSRFTKLIKECDEKIA  118 (356)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999988888776663

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.27  E-value=7.2e-11  Score=125.59  Aligned_cols=185  Identities=12%  Similarity=0.086  Sum_probs=139.3

Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHhhhcCCCCCccccccccccCCCCCCCC-CCCCchhhHHHHHhhhhcCCCCchHHHHHH
Q 017383           11 DFQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKE   89 (372)
Q Consensus        11 ~l~~~~~~l~~~e~~ik~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~~A~~~~~~al~~~p~~~~a~~~~~   89 (372)
                      .+...+....+|++++......+...+... .        .....+..+ ..|++++|+..++......|.....  +..
T Consensus       640 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~--------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~  708 (899)
T TIGR02917       640 LLADAYAVMKNYAKAITSLKRALELKPDNT-E--------AQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALG--FEL  708 (899)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-H--------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHH--HHH
Confidence            344555667788888877776665443111 0        001111222 6788899999999988888774444  668


Q ss_pred             HHHHHHHhhcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 017383           90 LGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKE  169 (372)
Q Consensus        90 ~g~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~  169 (372)
                      +|.+++..|+|++|+..|.+++...|+...+.++|.++...|++++|+..+++++..+|++..+++.+|.++..+|++++
T Consensus       709 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~  788 (899)
T TIGR02917       709 EGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDK  788 (899)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHH
Confidence            89999999999999999999999888877778889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHccCCCcHHHHHHH---------HHHHHHHHHHHHhhh
Q 017383          170 SIEDSEFALRLEPQNQEIKKQL---------AEVKSLYEKEVFQKA  206 (372)
Q Consensus       170 A~~~~~~al~l~P~~~~~~~~l---------~~a~~~~~~~~~~~~  206 (372)
                      |+..|++++...|++..++..+         .++...+++++...+
T Consensus       789 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~  834 (899)
T TIGR02917       789 AIKHYRTVVKKAPDNAVVLNNLAWLYLELKDPRALEYAEKALKLAP  834 (899)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCC
Confidence            9999999999999887765443         334555666555443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.27  E-value=1.7e-11  Score=89.24  Aligned_cols=65  Identities=34%  Similarity=0.468  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHccCC
Q 017383          118 VAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG-KLKESIEDSEFALRLEP  182 (372)
Q Consensus       118 ~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg-~~~~A~~~~~~al~l~P  182 (372)
                      .+|.++|.+++..|+|++|+.+|+++++++|+++.+|+++|.++..+| ++++|+.+|+++++++|
T Consensus         4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            344444444444444444444444444444444444444444444444 34444555544444444

...

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.27  E-value=2.4e-11  Score=88.46  Aligned_cols=66  Identities=39%  Similarity=0.648  Sum_probs=62.9

Q ss_pred             hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCC
Q 017383           83 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR-RFQEAEDDCTEALNLDD  148 (372)
Q Consensus        83 ~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g-~~~eA~~~~~~Al~l~p  148 (372)
                      .+..+..+|.+++..|+|++|+.+|+++++++|+ +.+|+++|.||..+| ++++|+.+++++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            3566889999999999999999999999999999 999999999999999 79999999999999998

...

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.27  E-value=1.4e-10  Score=112.98  Aligned_cols=147  Identities=16%  Similarity=0.108  Sum_probs=117.3

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCc--hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTP--DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEA  136 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~--~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA  136 (372)
                      ..|++++|+..++.++...+...  ....+..+|.+|+..|++++|+.+|.++++.+|. ..++..++.++...|++++|
T Consensus        81 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A  160 (389)
T PRK11788         81 RRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKA  160 (389)
T ss_pred             HcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHH
Confidence            78899999999998888543221  2345778899999999999999999999988877 78888999999999999999


Q ss_pred             HHHHHHHHhcCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHH----------HHHHHHHHHHHHH
Q 017383          137 EDDCTEALNLDDRYI-----KAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK----------KQLAEVKSLYEKE  201 (372)
Q Consensus       137 ~~~~~~Al~l~p~~~-----~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~----------~~l~~a~~~~~~~  201 (372)
                      +..+.+++..+|.+.     ..+..+|.++...|++++|+..|++++.++|++..++          +++.+|...+.+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~  240 (389)
T PRK11788        161 IDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERV  240 (389)
T ss_pred             HHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            999999998887653     3566788889999999999999999999998876553          4566666666666


Q ss_pred             HHhhh
Q 017383          202 VFQKA  206 (372)
Q Consensus       202 ~~~~~  206 (372)
                      +...+
T Consensus       241 ~~~~p  245 (389)
T PRK11788        241 EEQDP  245 (389)
T ss_pred             HHHCh
Confidence            65443

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.25  E-value=1.6e-10  Score=119.64  Aligned_cols=134  Identities=8%  Similarity=0.006  Sum_probs=118.0

Q ss_pred             HHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 017383           71 ISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR  149 (372)
Q Consensus        71 ~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~  149 (372)
                      .....+..|++  +.++..+|.+....|.+++|...++.+++++|+ ..++.++|.++.+++++++|+..+++++..+|+
T Consensus        75 ~~~~~~~~~~~--~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~  152 (694)
T PRK15179         75 LLDYVRRYPHT--ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS  152 (694)
T ss_pred             HHHHHHhcccc--HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC
Confidence            33334445553  445779999999999999999999999999999 999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHH----------HHHHHHHHHHHHHHHhhh
Q 017383          150 YIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK----------KQLAEVKSLYEKEVFQKA  206 (372)
Q Consensus       150 ~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~----------~~l~~a~~~~~~~~~~~~  206 (372)
                      ++.+++.+|.++..+|+|++|+..|++++..+|++..++          +..++|...|++++....
T Consensus       153 ~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~  219 (694)
T PRK15179        153 SAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG  219 (694)
T ss_pred             CHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence            999999999999999999999999999999999988774          566777778887766554

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.24  E-value=2.3e-10  Score=121.32  Aligned_cols=132  Identities=11%  Similarity=0.115  Sum_probs=110.9

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~  138 (372)
                      -.|++++|+..|.++...+|.  .+.++..+|..+...|++++|+.+|+++++++|. ..++..+|.++...|++++|+.
T Consensus        27 ~~g~~~~A~~~~~~~~~~~~~--~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~  104 (765)
T PRK10049         27 WAGQDAEVITVYNRYRVHMQL--PARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALV  104 (765)
T ss_pred             HcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            457888888888888877766  4444668888889999999999999999998887 7888888889999999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHH
Q 017383          139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV  194 (372)
Q Consensus       139 ~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a  194 (372)
                      .+++++..+|++.. ++.+|.++...|++++|+..|++++.+.|++..++..+..+
T Consensus       105 ~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~  159 (765)
T PRK10049        105 KAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQA  159 (765)
T ss_pred             HHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            99999999998888 88889999999999999999999999999888876555443

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.24  E-value=1.5e-10  Score=105.03  Aligned_cols=159  Identities=16%  Similarity=0.082  Sum_probs=123.7

Q ss_pred             hHHHHHHHHHHHHHHhhhcCCCCCccccccccccCCCCCCCC-CCCCchhhHHHHHhhhhcCCCCchH-HHHHHHHHHHH
Q 017383           18 DLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDA-TSEKELGNECF   95 (372)
Q Consensus        18 ~l~~~e~~ik~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~~A~~~~~~al~~~p~~~~a-~~~~~~g~~~~   95 (372)
                      ..++|+.++...+..+...+.....      ..+....|..| ..|++++|+..|+++++..|+++.+ .+++.+|.+++
T Consensus        45 ~~~~~~~A~~~~~~~~~~~p~~~~~------~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~  118 (235)
T TIGR03302        45 DSGDYTEAIKYFEALESRYPFSPYA------EQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNY  118 (235)
T ss_pred             HcCCHHHHHHHHHHHHHhCCCchhH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHH
Confidence            3467888888777766554411100      00011223344 7899999999999999999987653 35778999998


Q ss_pred             Hh--------hcHHHHHHHHHHHHccCCC-HH---H--------------HHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 017383           96 KQ--------KKFKEAIDCYSRSIALSPT-AV---A--------------YANRAMAYLKLRRFQEAEDDCTEALNLDDR  149 (372)
Q Consensus        96 ~~--------g~~~~Ai~~y~~al~~~p~-~~---~--------------~~~la~~~~~~g~~~eA~~~~~~Al~l~p~  149 (372)
                      ..        |++++|+..|++++..+|+ ..   +              ...+|.+|+..|++.+|+..|++++...|+
T Consensus       119 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~  198 (235)
T TIGR03302       119 NQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPD  198 (235)
T ss_pred             HhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCC
Confidence            76        8999999999999999997 21   1              236789999999999999999999999775


Q ss_pred             ---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 017383          150 ---YIKAYSRRATARKELGKLKESIEDSEFALRLEP  182 (372)
Q Consensus       150 ---~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P  182 (372)
                         ...+++++|.++..+|++++|..+++......|
T Consensus       199 ~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~  234 (235)
T TIGR03302       199 TPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP  234 (235)
T ss_pred             CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence               468999999999999999999998887766554

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.23  E-value=1.2e-10  Score=113.28  Aligned_cols=156  Identities=16%  Similarity=0.164  Sum_probs=120.7

Q ss_pred             CCCCCCC-CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHh
Q 017383           53 KPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKL  130 (372)
Q Consensus        53 ~~~~~~y-~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~  130 (372)
                      -..|+-| ..|.+.+|..+|.++..++|....+|  ...|+.|...|+.++|+.+|..|-++.|. ...+.-+|+-|..+
T Consensus       316 ~aVg~YYl~i~k~seARry~SKat~lD~~fgpaW--l~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t  393 (611)
T KOG1173|consen  316 FAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAW--LAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRT  393 (611)
T ss_pred             hhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHH--HHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHh
Confidence            4556555 66999999999999999999976664  46788888888888888888777777766 44445566666666


Q ss_pred             cCHHHHHHHHHHHHhcCCCC-----------------------------------------HHHHHHHHHHHHHcCCHHH
Q 017383          131 RRFQEAEDDCTEALNLDDRY-----------------------------------------IKAYSRRATARKELGKLKE  169 (372)
Q Consensus       131 g~~~eA~~~~~~Al~l~p~~-----------------------------------------~~a~~~lg~~~~~lg~~~~  169 (372)
                      ++++-|..+|.+|+.+.|++                                         ...+.++|.++..++++++
T Consensus       394 ~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e  473 (611)
T KOG1173|consen  394 NNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE  473 (611)
T ss_pred             ccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence            66666666666666666654                                         2336789999999999999


Q ss_pred             HHHHHHHHHccCCCcHHH----------HHHHHHHHHHHHHHHHhhhhhHH
Q 017383          170 SIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEKEVFQKASKTL  210 (372)
Q Consensus       170 A~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~~~~~~~~~~~~  210 (372)
                      |+..|+++|.+.|.+...          .++++.|...|.+++..++....
T Consensus       474 AI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~  524 (611)
T KOG1173|consen  474 AIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIF  524 (611)
T ss_pred             HHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHH
Confidence            999999999999999876          37888899999999988886643

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.22  E-value=1.6e-10  Score=106.48  Aligned_cols=115  Identities=25%  Similarity=0.392  Sum_probs=104.3

Q ss_pred             chHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 017383           82 PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATA  160 (372)
Q Consensus        82 ~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~  160 (372)
                      .++.-+..+|..++..|+|.+|+..|..|++.+|+ ..+++.||.+|+.+|+..-|+.+++++|++.|++..+...+|.+
T Consensus        36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~v  115 (504)
T KOG0624|consen   36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVV  115 (504)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchh
Confidence            35666889999999999999999999999999999 99999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHccCCCcH---HHHHHHHHHHH
Q 017383          161 RKELGKLKESIEDSEFALRLEPQNQ---EIKKQLAEVKS  196 (372)
Q Consensus       161 ~~~lg~~~~A~~~~~~al~l~P~~~---~~~~~l~~a~~  196 (372)
                      +...|.+++|..+|.++|..+|++.   +++..+..+..
T Consensus       116 llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e  154 (504)
T KOG0624|consen  116 LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQE  154 (504)
T ss_pred             hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHH
Confidence            9999999999999999999999653   44444444443

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.21  E-value=1.7e-10  Score=112.60  Aligned_cols=145  Identities=15%  Similarity=0.153  Sum_probs=106.4

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~  138 (372)
                      ..|++.+|.-+|+.++..+|.+.+  +|..+|.+....++-..||..+++|++++|+ ..++..||.+|...|.-.+|..
T Consensus       297 ~nG~L~~A~LafEAAVkqdP~hae--AW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~  374 (579)
T KOG1125|consen  297 KNGDLSEAALAFEAAVKQDPQHAE--AWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK  374 (579)
T ss_pred             hcCCchHHHHHHHHHHhhChHHHH--HHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence            678999999999999999999544  4779999999999999999999999999998 7777777777777766666666


Q ss_pred             HHHHHHhcC-----------------------------------------C--CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 017383          139 DCTEALNLD-----------------------------------------D--RYIKAYSRRATARKELGKLKESIEDSE  175 (372)
Q Consensus       139 ~~~~Al~l~-----------------------------------------p--~~~~a~~~lg~~~~~lg~~~~A~~~~~  175 (372)
                      ++..-|...                                         |  .+++++..||.+|...|+|+.|+++|+
T Consensus       375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~  454 (579)
T KOG1125|consen  375 MLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFE  454 (579)
T ss_pred             HHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHH
Confidence            555544322                                         2  235556667777777777777777777


Q ss_pred             HHHccCCCcHHHHHHH----------HHHHHHHHHHHHhhh
Q 017383          176 FALRLEPQNQEIKKQL----------AEVKSLYEKEVFQKA  206 (372)
Q Consensus       176 ~al~l~P~~~~~~~~l----------~~a~~~~~~~~~~~~  206 (372)
                      .||..+|+|...|.+|          .+|...|.+++...|
T Consensus       455 ~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP  495 (579)
T KOG1125|consen  455 AALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQP  495 (579)
T ss_pred             HHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCC
Confidence            7777777776666444          345566666666554

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.21  E-value=2.4e-10  Score=101.30  Aligned_cols=111  Identities=19%  Similarity=0.198  Sum_probs=97.2

Q ss_pred             HhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHcCC--HHHHH
Q 017383           96 KQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATAR-KELGK--LKESI  171 (372)
Q Consensus        96 ~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~-~~lg~--~~~A~  171 (372)
                      ..++.++++..++++++.+|+ ...|..+|.+|..+|++++|+..|++|++++|+++.++..+|.++ ...|+  +++|.
T Consensus        51 ~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~  130 (198)
T PRK10370         51 SQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR  130 (198)
T ss_pred             CchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence            367889999999999999998 999999999999999999999999999999999999999999975 77788  59999


Q ss_pred             HHHHHHHccCCCcHHHH----------HHHHHHHHHHHHHHHhhh
Q 017383          172 EDSEFALRLEPQNQEIK----------KQLAEVKSLYEKEVFQKA  206 (372)
Q Consensus       172 ~~~~~al~l~P~~~~~~----------~~l~~a~~~~~~~~~~~~  206 (372)
                      ..++++++++|++..++          +++.+|...+++.+...+
T Consensus       131 ~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~  175 (198)
T PRK10370        131 EMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNS  175 (198)
T ss_pred             HHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            99999999999998885          445555555655555444

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.20  E-value=4.8e-10  Score=100.19  Aligned_cols=138  Identities=18%  Similarity=0.155  Sum_probs=124.2

Q ss_pred             CCCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 017383           59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE  137 (372)
Q Consensus        59 y~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~  137 (372)
                      |..|+-+.++....+++...|.+...  +..+|...+..|+|..|+..++++..++|+ +.+|..+|.+|.+.|++++|.
T Consensus        77 ~~~G~a~~~l~~~~~~~~~~~~d~~l--l~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar  154 (257)
T COG5010          77 YLRGDADSSLAVLQKSAIAYPKDREL--LAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEAR  154 (257)
T ss_pred             HhcccccchHHHHhhhhccCcccHHH--HHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHH
Confidence            46788888888888888888774444  557899999999999999999999999998 999999999999999999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHH
Q 017383          138 DDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLY  198 (372)
Q Consensus       138 ~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~~  198 (372)
                      ..|.+|+++.|+.+.++.|+|..+.-.|+++.|...+..+....+.+..+..++.-+....
T Consensus       155 ~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~  215 (257)
T COG5010         155 RAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQ  215 (257)
T ss_pred             HHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhc
Confidence            9999999999999999999999999999999999999999999888888888777665543

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.20  E-value=1.2e-10  Score=106.62  Aligned_cols=133  Identities=14%  Similarity=0.122  Sum_probs=103.0

Q ss_pred             CCCCCC-CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCC--C--HHHHHHHHHHHH
Q 017383           54 PSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSP--T--AVAYANRAMAYL  128 (372)
Q Consensus        54 ~~~~~y-~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p--~--~~~~~~la~~~~  128 (372)
                      +++..| ..++.+-|+.+|.+.|.+.-.+++.  +.++|.||+-.++|+-++.+|++|+....  .  +++|+|+|.+..
T Consensus       329 cia~~yfY~~~PE~AlryYRRiLqmG~~speL--f~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV  406 (478)
T KOG1129|consen  329 CIAVGYFYDNNPEMALRYYRRILQMGAQSPEL--FCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAV  406 (478)
T ss_pred             eeeeccccCCChHHHHHHHHHHHHhcCCChHH--HhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEE
Confidence            334444 5567777888888888877665555  55888888888888888888888887653  3  788888888888


Q ss_pred             HhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHH
Q 017383          129 KLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK  188 (372)
Q Consensus       129 ~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~  188 (372)
                      ..|++.-|..+|+-|+.-|+++..++.++|.+-...|+.++|...+..|-.+.|+..+..
T Consensus       407 ~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~  466 (478)
T KOG1129|consen  407 TIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVT  466 (478)
T ss_pred             eccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccc
Confidence            888888888888888888888888888888888888888888888888888888765543

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.20  E-value=1.8e-10  Score=96.48  Aligned_cols=89  Identities=17%  Similarity=0.088  Sum_probs=83.3

Q ss_pred             CCCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 017383           59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE  137 (372)
Q Consensus        59 y~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~  137 (372)
                      |..|++++|...|+-....+|.  .+..|+++|.++...|+|++||.+|.+++.++|+ +.++.+.|.|++.+|+.+.|+
T Consensus        46 y~~G~l~~A~~~f~~L~~~Dp~--~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~  123 (157)
T PRK15363         46 MEVKEFAGAARLFQLLTIYDAW--SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAI  123 (157)
T ss_pred             HHCCCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHH
Confidence            5889999999999999999999  4555889999999999999999999999999999 999999999999999999999


Q ss_pred             HHHHHHHhcCCC
Q 017383          138 DDCTEALNLDDR  149 (372)
Q Consensus       138 ~~~~~Al~l~p~  149 (372)
                      ..|+.|+.....
T Consensus       124 ~aF~~Ai~~~~~  135 (157)
T PRK15363        124 KALKAVVRICGE  135 (157)
T ss_pred             HHHHHHHHHhcc
Confidence            999999998633

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.19  E-value=4.9e-10  Score=114.14  Aligned_cols=122  Identities=16%  Similarity=0.166  Sum_probs=118.2

Q ss_pred             CCCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 017383           59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE  137 (372)
Q Consensus        59 y~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~  137 (372)
                      |..|++++|...+.++++.+|.+..+  |+.+|.+|-.+|+.++|+.++-.|-.++|+ ...|..+|.....+|++.+|.
T Consensus       150 farg~~eeA~~i~~EvIkqdp~~~~a--y~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~  227 (895)
T KOG2076|consen  150 FARGDLEEAEEILMEVIKQDPRNPIA--YYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQAR  227 (895)
T ss_pred             HHhCCHHHHHHHHHHHHHhCccchhh--HHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHH
Confidence            67899999999999999999997666  779999999999999999999999999998 999999999999999999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 017383          138 DDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEP  182 (372)
Q Consensus       138 ~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P  182 (372)
                      -+|.+||+++|.+.+..++++.+|.++|++..|...|.+++.+.|
T Consensus       228 ~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p  272 (895)
T KOG2076|consen  228 YCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP  272 (895)
T ss_pred             HHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence            999999999999999999999999999999999999999999999

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.19  E-value=1.4e-10  Score=109.11  Aligned_cols=133  Identities=23%  Similarity=0.272  Sum_probs=118.0

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-------------HHHHHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------------AVAYANRAMA  126 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-------------~~~~~~la~~  126 (372)
                      ..|++++|...--..+++++.+.++  ++.+|.+++..++.+.|+.+|+++|.++|.             ...+...|.-
T Consensus       181 ~~~~~~~a~~ea~~ilkld~~n~~a--l~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~  258 (486)
T KOG0550|consen  181 FLGDYDEAQSEAIDILKLDATNAEA--LYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGND  258 (486)
T ss_pred             hcccchhHHHHHHHHHhcccchhHH--HHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhh
Confidence            6799999999999999999985555  778999999999999999999999999997             2456678999


Q ss_pred             HHHhcCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHH
Q 017383          127 YLKLRRFQEAEDDCTEALNLDDRY----IKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV  194 (372)
Q Consensus       127 ~~~~g~~~eA~~~~~~Al~l~p~~----~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a  194 (372)
                      .++.|+|.+|.++|+.||.++|++    +..|.++|.++..+|+..+|+.+.+.++.++|....++...+.+
T Consensus       259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c  330 (486)
T KOG0550|consen  259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANC  330 (486)
T ss_pred             HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence            999999999999999999999987    66799999999999999999999999999999876664333333

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.19  E-value=6.7e-10  Score=117.82  Aligned_cols=153  Identities=13%  Similarity=0.079  Sum_probs=131.2

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCch--HHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC----------------HHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPD--ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----------------AVAYA  121 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~--a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~----------------~~~~~  121 (372)
                      ..|++++|+..|++++..+|....  ......++..+...|++++|+..+++++...|.                ..++.
T Consensus       284 ~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~  363 (765)
T PRK10049        284 KLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQS  363 (765)
T ss_pred             hcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHH
Confidence            789999999999999988876521  233457777889999999999999999998762                35678


Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHH----------HHHH
Q 017383          122 NRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQL  191 (372)
Q Consensus       122 ~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~----------~~~l  191 (372)
                      .+|.++...|++++|+..+++++...|.+..+++.+|.++...|++++|+..+++++.++|++..+          .+.+
T Consensus       364 ~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~  443 (765)
T PRK10049        364 LLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEW  443 (765)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCH
Confidence            899999999999999999999999999999999999999999999999999999999999999655          3567


Q ss_pred             HHHHHHHHHHHHhhhhhHHHH
Q 017383          192 AEVKSLYEKEVFQKASKTLEK  212 (372)
Q Consensus       192 ~~a~~~~~~~~~~~~~~~~~~  212 (372)
                      .+|...+++.+...|......
T Consensus       444 ~~A~~~~~~ll~~~Pd~~~~~  464 (765)
T PRK10049        444 RQMDVLTDDVVAREPQDPGVQ  464 (765)
T ss_pred             HHHHHHHHHHHHhCCCCHHHH
Confidence            788888888888877776543

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.15  E-value=4.7e-10  Score=112.09  Aligned_cols=186  Identities=18%  Similarity=0.155  Sum_probs=144.9

Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHhhhcC--CCCCccccccccccCCCCCCCC-CCCCchhhHHHHHhhhhcCCCCchHHHH
Q 017383           11 DFQGFLNDLQDWDLSLNEKDKKMKHKA--SSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSE   87 (372)
Q Consensus        11 ~l~~~~~~l~~~e~~ik~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~y-~~g~~~~A~~~~~~al~~~p~~~~a~~~   87 (372)
                      +.-..+..++.|..-|-.+...-....  ...+      ..+.+.+....| .+||+-.--.+|++++++. +...+.+.
T Consensus       416 sAl~I~Erlemw~~vi~CY~~lg~~~kaeei~~------q~lek~~d~~lyc~LGDv~~d~s~yEkawEls-n~~sarA~  488 (777)
T KOG1128|consen  416 SALVIFERLEMWDPVILCYLLLGQHGKAEEINR------QELEKDPDPRLYCLLGDVLHDPSLYEKAWELS-NYISARAQ  488 (777)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHhcccchHHHHHH------HHhcCCCcchhHHHhhhhccChHHHHHHHHHh-hhhhHHHH
Confidence            344667788889888774432211000  0000      011112223345 6788888889999999987 44455566


Q ss_pred             HHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 017383           88 KELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGK  166 (372)
Q Consensus        88 ~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~  166 (372)
                      +.+|...+..++|+++..+++.+++++|- ...|+++|.|.++++++..|..+|.+++.++|++..+|.+++.+|..+|+
T Consensus       489 r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~  568 (777)
T KOG1128|consen  489 RSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKK  568 (777)
T ss_pred             HhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhh
Confidence            77888888999999999999999999998 99999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHccCCCcHHHH----------HHHHHHHHHHHHHHH
Q 017383          167 LKESIEDSEFALRLEPQNQEIK----------KQLAEVKSLYEKEVF  203 (372)
Q Consensus       167 ~~~A~~~~~~al~l~P~~~~~~----------~~l~~a~~~~~~~~~  203 (372)
                      -.+|...+.+|++.+-++..+|          +..+++...|.+.+.
T Consensus       569 k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~  615 (777)
T KOG1128|consen  569 KKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD  615 (777)
T ss_pred             hHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence            9999999999999998877765          556666666665443

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.14  E-value=2e-10  Score=101.00  Aligned_cols=99  Identities=39%  Similarity=0.599  Sum_probs=93.4

Q ss_pred             hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 017383           83 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATAR  161 (372)
Q Consensus        83 ~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~  161 (372)
                      .+.-++.-|+.|+...+|..||.+|.++|.++|. +..|.|++.||+++++|+.+..+|.+|++++|+.+++++.+|.+.
T Consensus         9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~   88 (284)
T KOG4642|consen    9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWL   88 (284)
T ss_pred             HHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHH
Confidence            3455778899999999999999999999999999 889999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHccC
Q 017383          162 KELGKLKESIEDSEFALRLE  181 (372)
Q Consensus       162 ~~lg~~~~A~~~~~~al~l~  181 (372)
                      .....|++|+..++++..+.
T Consensus        89 l~s~~~~eaI~~Lqra~sl~  108 (284)
T KOG4642|consen   89 LQSKGYDEAIKVLQRAYSLL  108 (284)
T ss_pred             HhhccccHHHHHHHHHHHHH
Confidence            99999999999999997653

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=99.12  E-value=1.3e-10  Score=111.70  Aligned_cols=117  Identities=38%  Similarity=0.596  Sum_probs=110.2

Q ss_pred             HHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 017383           84 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARK  162 (372)
Q Consensus        84 a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~  162 (372)
                      +....+.|+.++..++|+.|+..|.+||+++|+ +..+.+|+.++++.++|..|+.++.+|++++|.+.++|+++|.+..
T Consensus         4 a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m   83 (476)
T KOG0376|consen    4 AEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM   83 (476)
T ss_pred             hhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHH
Confidence            344668899999999999999999999999999 8899999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHH
Q 017383          163 ELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEK  200 (372)
Q Consensus       163 ~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~~~~  200 (372)
                      .++.+.+|+.+|++...+.|+++.+...+.++.....+
T Consensus        84 ~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~  121 (476)
T KOG0376|consen   84 ALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSE  121 (476)
T ss_pred             hHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999888776655

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.12  E-value=2.5e-09  Score=97.79  Aligned_cols=132  Identities=18%  Similarity=0.161  Sum_probs=116.5

Q ss_pred             CCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhc---CHHHH
Q 017383           61 YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR---RFQEA  136 (372)
Q Consensus        61 ~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g---~~~eA  136 (372)
                      ....+.-+.-++..|..+|++.+.  |..+|.+|+..|++..|...|.+|+.+.|+ +..+..+|.+++...   ...++
T Consensus       135 ~~~~~~l~a~Le~~L~~nP~d~eg--W~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a  212 (287)
T COG4235         135 EQEMEALIARLETHLQQNPGDAEG--WDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKA  212 (287)
T ss_pred             cccHHHHHHHHHHHHHhCCCCchh--HHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHH
Confidence            345677788889999999996666  669999999999999999999999999998 999999999888775   46789


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHH
Q 017383          137 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV  194 (372)
Q Consensus       137 ~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a  194 (372)
                      ...+.+++.+||++..+.+.+|..++..|+|.+|...++..+.+.|.+......++..
T Consensus       213 ~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~  270 (287)
T COG4235         213 RALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERS  270 (287)
T ss_pred             HHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence            9999999999999999999999999999999999999999999999886655444443

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.12  E-value=1.8e-10  Score=87.42  Aligned_cols=80  Identities=29%  Similarity=0.363  Sum_probs=59.5

Q ss_pred             hhcHHHHHHHHHHHHccCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 017383           97 QKKFKEAIDCYSRSIALSPT---AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIED  173 (372)
Q Consensus        97 ~g~~~~Ai~~y~~al~~~p~---~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~  173 (372)
                      +|+|+.|+..|+++++.+|.   ...++.+|.||+.+|+|++|+..+++ +..++.+....+.+|.++..+|++++|+..
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            57778888888888887772   55666778888888888888888877 777777777777778888888888888877


Q ss_pred             HHHH
Q 017383          174 SEFA  177 (372)
Q Consensus       174 ~~~a  177 (372)
                      |+++
T Consensus        81 l~~~   84 (84)
T PF12895_consen   81 LEKA   84 (84)
T ss_dssp             HHHH
T ss_pred             HhcC
Confidence            7764

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.11  E-value=2e-09  Score=103.59  Aligned_cols=138  Identities=20%  Similarity=0.140  Sum_probs=124.3

Q ss_pred             CCCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 017383           59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE  137 (372)
Q Consensus        59 y~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~  137 (372)
                      |..|+++.|+..+...++..|+++..  +-..|.+++..++..+|++.+++++.++|+ ..+..++|.+|++.|++.+|+
T Consensus       317 ~~~~~~d~A~~~l~~L~~~~P~N~~~--~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai  394 (484)
T COG4783         317 YLAGQYDEALKLLQPLIAAQPDNPYY--LELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAI  394 (484)
T ss_pred             HHhcccchHHHHHHHHHHhCCCCHHH--HHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHH
Confidence            46789999999999999999985555  558899999999999999999999999999 889999999999999999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHH
Q 017383          138 DDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLY  198 (372)
Q Consensus       138 ~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~~  198 (372)
                      ..+...+.-+|+++..|..||.+|..+|+..+|...+-..+.+..+-..+...+..+...+
T Consensus       395 ~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~  455 (484)
T COG4783         395 RILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQV  455 (484)
T ss_pred             HHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999988888777776666665544

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.10  E-value=3.8e-10  Score=81.12  Aligned_cols=64  Identities=25%  Similarity=0.258  Sum_probs=40.2

Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcH
Q 017383          122 NRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ  185 (372)
Q Consensus       122 ~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~  185 (372)
                      .+|..++..|+|++|+..|++++..+|+++.+++.+|.++..+|++++|+..|++++.++|+++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            4566666666666666666666666666666666666666666666666666666666666653

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.09  E-value=1.5e-10  Score=106.04  Aligned_cols=134  Identities=13%  Similarity=0.143  Sum_probs=122.1

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~  138 (372)
                      .++++++|+++|..+++.+|.+.++.+  .+|..||-.++.+-|+.+|++.|.+--. +.++.|+|.|.+.-++++-++.
T Consensus       302 am~~~~~a~~lYk~vlk~~~~nvEaiA--cia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~  379 (478)
T KOG1129|consen  302 AMEQQEDALQLYKLVLKLHPINVEAIA--CIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLP  379 (478)
T ss_pred             HHHhHHHHHHHHHHHHhcCCccceeee--eeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHH
Confidence            678999999999999999999888866  7788899999999999999999998866 9999999999999999999999


Q ss_pred             HHHHHHhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHH
Q 017383          139 DCTEALNLDD---RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVK  195 (372)
Q Consensus       139 ~~~~Al~l~p---~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~  195 (372)
                      .|++|+....   .-++.||++|.+....|++..|..+|+-+|..+|++.++..+|+...
T Consensus       380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~  439 (478)
T KOG1129|consen  380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLA  439 (478)
T ss_pred             HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHH
Confidence            9999998753   34788999999999999999999999999999999999988776543

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.08  E-value=1.4e-09  Score=89.71  Aligned_cols=93  Identities=19%  Similarity=0.173  Sum_probs=86.4

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~  138 (372)
                      ..|++++|+..+++++..+|.++.+  +..+|.+++..|++++|+.+|++++..+|. ...++++|.+|...|++++|+.
T Consensus        29 ~~~~~~~A~~~~~~~~~~~p~~~~~--~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~  106 (135)
T TIGR02552        29 QQGRYDEALKLFQLLAAYDPYNSRY--WLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALK  106 (135)
T ss_pred             HcccHHHHHHHHHHHHHhCCCcHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHH
Confidence            7799999999999999999985555  679999999999999999999999999998 9999999999999999999999


Q ss_pred             HHHHHHhcCCCCHHHH
Q 017383          139 DCTEALNLDDRYIKAY  154 (372)
Q Consensus       139 ~~~~Al~l~p~~~~a~  154 (372)
                      .++++++++|++....
T Consensus       107 ~~~~al~~~p~~~~~~  122 (135)
T TIGR02552       107 ALDLAIEICGENPEYS  122 (135)
T ss_pred             HHHHHHHhccccchHH
Confidence            9999999999886643

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.08  E-value=1.7e-10  Score=107.70  Aligned_cols=119  Identities=24%  Similarity=0.271  Sum_probs=88.3

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~  138 (372)
                      ..|+.++|+..|+++++.+|++..+  ...++..+...|+++++...+.......|. +..+..+|.+|+.+|++++|+.
T Consensus       158 ~~G~~~~A~~~~~~al~~~P~~~~~--~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~  235 (280)
T PF13429_consen  158 QLGDPDKALRDYRKALELDPDDPDA--RNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALE  235 (280)
T ss_dssp             HCCHHHHHHHHHHHHHHH-TT-HHH--HHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHcCCCCHHH--HHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccc
Confidence            6799999999999999999996666  558899999999999988888887777665 7778899999999999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 017383          139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRL  180 (372)
Q Consensus       139 ~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l  180 (372)
                      ++++++..+|+++..+..+|.++...|+.++|...+++++..
T Consensus       236 ~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~  277 (280)
T PF13429_consen  236 YLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL  277 (280)
T ss_dssp             HHHHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999999999999999999999999999999988754

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.08  E-value=2e-09  Score=110.56  Aligned_cols=137  Identities=18%  Similarity=0.157  Sum_probs=115.9

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchH-----------------------------------HHHHHHHHHHHHhhcHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDA-----------------------------------TSEKELGNECFKQKKFKEAI  104 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a-----------------------------------~~~~~~g~~~~~~g~~~~Ai  104 (372)
                      .+|+.+.|+..|.+++.++|....+                                   .++..+++.||-.|+|..+.
T Consensus       211 kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~  290 (1018)
T KOG2002|consen  211 KLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVW  290 (1018)
T ss_pred             hccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHH
Confidence            6777777777777777777754221                                   24567899999999999999


Q ss_pred             HHHHHHHccCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 017383          105 DCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY-IKAYSRRATARKELGKLKESIEDSEFALR  179 (372)
Q Consensus       105 ~~y~~al~~~p~----~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~-~~a~~~lg~~~~~lg~~~~A~~~~~~al~  179 (372)
                      ..+..++...-+    +..++.+|.+|..+|+|++|..+|..+++.++++ .-+++.+|..+...|+++.|+.+|+++++
T Consensus       291 ~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k  370 (1018)
T KOG2002|consen  291 HLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLK  370 (1018)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHH
Confidence            999999987644    7789999999999999999999999999999988 88899999999999999999999999999


Q ss_pred             cCCCcHHHHHHHHHHHH
Q 017383          180 LEPQNQEIKKQLAEVKS  196 (372)
Q Consensus       180 l~P~~~~~~~~l~~a~~  196 (372)
                      ..|++.+....|+-...
T Consensus       371 ~~p~~~etm~iLG~Lya  387 (1018)
T KOG2002|consen  371 QLPNNYETMKILGCLYA  387 (1018)
T ss_pred             hCcchHHHHHHHHhHHH
Confidence            99999987654444443

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.07  E-value=6.6e-10  Score=113.95  Aligned_cols=139  Identities=21%  Similarity=0.193  Sum_probs=123.3

Q ss_pred             CCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHH
Q 017383           61 YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDD  139 (372)
Q Consensus        61 ~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~  139 (372)
                      .+.+++|+..|.++|+.+|.  ..++-+.+|.++...|++.+|+..|.++.+.-.+ ..+|.|+|.||+.+|+|..|++.
T Consensus       625 kk~~~KAlq~y~kvL~~dpk--N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqm  702 (1018)
T KOG2002|consen  625 KKHQEKALQLYGKVLRNDPK--NMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQM  702 (1018)
T ss_pred             HHHHHHHHHHHHHHHhcCcc--hhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHH
Confidence            45688999999999999999  4555779999999999999999999999887664 89999999999999999999999


Q ss_pred             HHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHH
Q 017383          140 CTEALNLD--DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKE  201 (372)
Q Consensus       140 ~~~Al~l~--p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~~~~~  201 (372)
                      |+.+++..  .++...+..||.+++..|.+.+|...+..|+.+.|.++.+..+++.+...+...
T Consensus       703 Ye~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s  766 (1018)
T KOG2002|consen  703 YENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAES  766 (1018)
T ss_pred             HHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHH
Confidence            99999864  467899999999999999999999999999999999998877776666555443

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.06  E-value=1.2e-09  Score=78.55  Aligned_cols=64  Identities=22%  Similarity=0.306  Sum_probs=59.5

Q ss_pred             HHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCH
Q 017383           88 KELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYI  151 (372)
Q Consensus        88 ~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~  151 (372)
                      +.+|..++..|+|++|+.+|+++++.+|+ ..+++.+|.|+..+|++++|+..|++++.++|+++
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            36799999999999999999999999999 99999999999999999999999999999999874

>PRK15331 chaperone protein SicA; Provisional

Probab=99.05  E-value=4.5e-09  Score=88.45  Aligned_cols=105  Identities=12%  Similarity=0.030  Sum_probs=96.2

Q ss_pred             hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 017383           83 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATAR  161 (372)
Q Consensus        83 ~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~  161 (372)
                      .....+..|.-++..|+|++|...|+-..-.+|. ...+..+|.|+..+++|++|+..|..|..++++++...+..|.|+
T Consensus        36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~  115 (165)
T PRK15331         36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQ  115 (165)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHH
Confidence            3445778899999999999999999999999997 999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHccCCCcHHHH
Q 017383          162 KELGKLKESIEDSEFALRLEPQNQEIK  188 (372)
Q Consensus       162 ~~lg~~~~A~~~~~~al~l~P~~~~~~  188 (372)
                      ..+|+.+.|..+|+.++. .|.+....
T Consensus       116 l~l~~~~~A~~~f~~a~~-~~~~~~l~  141 (165)
T PRK15331        116 LLMRKAAKARQCFELVNE-RTEDESLR  141 (165)
T ss_pred             HHhCCHHHHHHHHHHHHh-CcchHHHH
Confidence            999999999999999998 46654443

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.05  E-value=4.3e-09  Score=88.44  Aligned_cols=118  Identities=16%  Similarity=0.129  Sum_probs=100.6

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCch-HHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC----HHHHHHHHHHHHHhcCHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPD-ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQ  134 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~-a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~~la~~~~~~g~~~  134 (372)
                      ..++...+...++..+...|+.+. ..+...+|.+++..|+|++|+..|+.++...|+    ..+..++|.+++..|+|+
T Consensus        23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d  102 (145)
T PF09976_consen   23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD  102 (145)
T ss_pred             HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence            456777777889999998888743 456778999999999999999999999998765    667899999999999999


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 017383          135 EAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFAL  178 (372)
Q Consensus       135 eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al  178 (372)
                      +|+..++. +.-.+-.+.++..+|.++...|++++|+..|+++|
T Consensus       103 ~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  103 EALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            99999966 33444557788899999999999999999999885

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.05  E-value=5.3e-09  Score=96.44  Aligned_cols=106  Identities=10%  Similarity=0.047  Sum_probs=95.3

Q ss_pred             hHHHHHHHHHHH-HHhhcHHHHHHHHHHHHccCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---HHHH
Q 017383           83 DATSEKELGNEC-FKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY---IKAY  154 (372)
Q Consensus        83 ~a~~~~~~g~~~-~~~g~~~~Ai~~y~~al~~~p~----~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~---~~a~  154 (372)
                      .....+..|..+ ++.|+|++|+..|+..+...|+    +.+++.+|.+|+..|+|++|+..|.+++...|++   +.++
T Consensus       141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl  220 (263)
T PRK10803        141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM  220 (263)
T ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence            334466777776 6789999999999999999998    6899999999999999999999999999998874   8889


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHH
Q 017383          155 SRRATARKELGKLKESIEDSEFALRLEPQNQEIK  188 (372)
Q Consensus       155 ~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~  188 (372)
                      +.+|.++..+|++++|...|+++++..|+...+.
T Consensus       221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~  254 (263)
T PRK10803        221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK  254 (263)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence            9999999999999999999999999999987543

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.04  E-value=4.3e-10  Score=85.32  Aligned_cols=82  Identities=22%  Similarity=0.284  Sum_probs=71.3

Q ss_pred             CCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHH
Q 017383           61 YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDD  139 (372)
Q Consensus        61 ~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~  139 (372)
                      .|+|+.|+..|+++++.+|.+++...++.+|.+|+..|+|++|+..+++ +..++. ....+.+|.|++.+|+|++|+..
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            5899999999999999998644555677899999999999999999999 778877 77778889999999999999999


Q ss_pred             HHHH
Q 017383          140 CTEA  143 (372)
Q Consensus       140 ~~~A  143 (372)
                      +++|
T Consensus        81 l~~~   84 (84)
T PF12895_consen   81 LEKA   84 (84)
T ss_dssp             HHHH
T ss_pred             HhcC
Confidence            9875

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.03  E-value=2.9e-09  Score=107.02  Aligned_cols=125  Identities=22%  Similarity=0.156  Sum_probs=114.1

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~  138 (372)
                      ..+.-++|..++.++-.++|.  .++.++..|.++...|.+.+|..+|..|+.++|+ ......+|.++...|+..-|..
T Consensus       662 ~~~~~~~a~~CL~Ea~~~~~l--~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~  739 (799)
T KOG4162|consen  662 LSGNDDEARSCLLEASKIDPL--SASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEK  739 (799)
T ss_pred             hcCCchHHHHHHHHHHhcchh--hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHH
Confidence            446677788899999999877  6667889999999999999999999999999999 8889999999999998888887


Q ss_pred             --HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHH
Q 017383          139 --DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE  186 (372)
Q Consensus       139 --~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~  186 (372)
                        .+..|+++||.+.++|+.+|.++..+|+.+.|.++|..|+.+++.+|-
T Consensus       740 ~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV  789 (799)
T KOG4162|consen  740 RSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV  789 (799)
T ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence              999999999999999999999999999999999999999999988763

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.03  E-value=3.4e-09  Score=94.77  Aligned_cols=116  Identities=17%  Similarity=0.095  Sum_probs=108.8

Q ss_pred             CCCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 017383           59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE  137 (372)
Q Consensus        59 y~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~  137 (372)
                      +..|+|.+|+..+.++..++|++..+  |..+|.+|.+.|++++|-..|.+++++.|+ +.+..|+|+.|+-.|+++.|.
T Consensus       111 ~~~g~~~~A~~~~rkA~~l~p~d~~~--~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~  188 (257)
T COG5010         111 IRNGNFGEAVSVLRKAARLAPTDWEA--WNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAE  188 (257)
T ss_pred             HHhcchHHHHHHHHHHhccCCCChhh--hhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHH
Confidence            36799999999999999999995555  779999999999999999999999999999 999999999999999999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 017383          138 DDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEF  176 (372)
Q Consensus       138 ~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~  176 (372)
                      ..+..+....+.+..+..+++.+....|++++|.....+
T Consensus       189 ~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~  227 (257)
T COG5010         189 TLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ  227 (257)
T ss_pred             HHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence            999999999999999999999999999999999877654

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=99.03  E-value=3.5e-09  Score=106.62  Aligned_cols=125  Identities=15%  Similarity=0.093  Sum_probs=106.3

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHh--------hcHHHHHHHHHHHHcc--CCC-HHHHHHHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQ--------KKFKEAIDCYSRSIAL--SPT-AVAYANRAMAYL  128 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~--------g~~~~Ai~~y~~al~~--~p~-~~~~~~la~~~~  128 (372)
                      ..+++..|+.+|+++++++|++..+++  .++.++...        .+...+.....+++.+  +|. +.+|..+|..+.
T Consensus       354 ~~~~~~~A~~lle~Ai~ldP~~a~a~A--~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~  431 (517)
T PRK10153        354 DAKSLNKASDLLEEILKSEPDFTYAQA--EKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQAL  431 (517)
T ss_pred             CHHHHHHHHHHHHHHHHhCCCcHHHHH--HHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHH
Confidence            445688999999999999999766655  556555432        3466778888887775  554 888999999999


Q ss_pred             HhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHH
Q 017383          129 KLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI  187 (372)
Q Consensus       129 ~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~  187 (372)
                      ..|++++|...+++|+.++| +..+|..+|.++...|++++|+..|++|+.++|.++..
T Consensus       432 ~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~  489 (517)
T PRK10153        432 VKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL  489 (517)
T ss_pred             hcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence            99999999999999999999 58899999999999999999999999999999998754

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.02  E-value=7.5e-09  Score=109.23  Aligned_cols=149  Identities=12%  Similarity=0.044  Sum_probs=109.6

Q ss_pred             CCCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 017383           59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE  137 (372)
Q Consensus        59 y~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~  137 (372)
                      +..|+++.|+..|+++++.+|.++-+..  .+..++...|++++|+.++++++.-.|. ...+..+|.+|..+|+|++|+
T Consensus        45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~--dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Ai  122 (822)
T PRK14574         45 ARAGDTAPVLDYLQEESKAGPLQSGQVD--DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQAL  122 (822)
T ss_pred             HhCCCHHHHHHHHHHHHhhCccchhhHH--HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            4678888888889998888888532322  6677777788888888888888822222 555566677888888888888


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHH---------HHHHHHHHHHHHHHHhhhhh
Q 017383          138 DDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK---------KQLAEVKSLYEKEVFQKASK  208 (372)
Q Consensus       138 ~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~---------~~l~~a~~~~~~~~~~~~~~  208 (372)
                      ..|+++++.+|+++.++..++.++...|+.++|+..+++++..+|.+....         ....++...+++.+...|..
T Consensus       123 ely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n  202 (822)
T PRK14574        123 ALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTS  202 (822)
T ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCC
Confidence            888888888888888888888888888888888888888888888765431         12223555666666665544


Q ss_pred             H
Q 017383          209 T  209 (372)
Q Consensus       209 ~  209 (372)
                      .
T Consensus       203 ~  203 (822)
T PRK14574        203 E  203 (822)
T ss_pred             H
Confidence            3

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.02  E-value=5.4e-09  Score=92.41  Aligned_cols=102  Identities=28%  Similarity=0.381  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHHHcc--------CCC-----------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 017383           86 SEKELGNECFKQKKFKEAIDCYSRSIAL--------SPT-----------AVAYANRAMAYLKLRRFQEAEDDCTEALNL  146 (372)
Q Consensus        86 ~~~~~g~~~~~~g~~~~Ai~~y~~al~~--------~p~-----------~~~~~~la~~~~~~g~~~eA~~~~~~Al~l  146 (372)
                      ++...||-+|+.|+|.+|..+|..|+..        .|.           ..++.|.+.|++..|+|-++++.|...|..
T Consensus       180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~  259 (329)
T KOG0545|consen  180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRH  259 (329)
T ss_pred             HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc
Confidence            5788999999999999999999999864        232           357899999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHH
Q 017383          147 DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI  187 (372)
Q Consensus       147 ~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~  187 (372)
                      +|.+.+||+++|.++...=+.++|..+|.++|.++|.-..+
T Consensus       260 ~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv  300 (329)
T KOG0545|consen  260 HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV  300 (329)
T ss_pred             CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence            99999999999999999999999999999999999986554

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.01  E-value=2.6e-09  Score=98.59  Aligned_cols=148  Identities=20%  Similarity=0.264  Sum_probs=113.5

Q ss_pred             hhHhhhHHHHHHHHhhHHHHHHHHHHH-----H------HHhhhcC-------------------CCCCcccccc-cccc
Q 017383            3 KHNRDQALDFQGFLNDLQDWDLSLNEK-----D------KKMKHKA-------------------SSKDNLVSSS-LKSA   51 (372)
Q Consensus         3 ~~~~~n~~~l~~~~~~l~~~e~~ik~~-----~------~~l~~~~-------------------~~~~~~~~~~-~~~~   51 (372)
                      ..+++=..+|++|-.++++-.++|++-     .      ..++...                   ++........ ....
T Consensus        19 ~e~Q~F~~DL~~WE~diK~KDkel~~Q~~~Pan~~~P~r~~FR~~ksGK~~~ssKK~Rs~I~~~dL~vd~I~~~LL~~~S   98 (536)
T KOG4648|consen   19 REYQNFVKDLYSWEQDIKNKDKELQKQPLSPANKDLPVRSHFRTDKSGKESPSSKKARSPIEKQDLPVDPIAQQLLKKAS   98 (536)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHhCCCCccccCCchhhhcccCCCCCcCcchhhhhcchhhccCCccHHHHHHHHhhH
Confidence            356777899999999999999988843     0      0111100                   0000000000 0000


Q ss_pred             C-CCCCCCC-CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHH
Q 017383           52 K-KPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYL  128 (372)
Q Consensus        52 ~-~~~~~~y-~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~  128 (372)
                      . +.-|+.| .+|.|++|+++|.+++..+|.++-.  +.+++.+|++.+.|..|...++.|+.++.. ..+|..||.+..
T Consensus        99 EiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~--~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~  176 (536)
T KOG4648|consen   99 EIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVY--HINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARE  176 (536)
T ss_pred             HHHHhhhhhhhccchhHHHHHhhhhhccCCCCccc--hhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence            0 3456665 9999999999999999999986665  559999999999999999999999999988 999999999999


Q ss_pred             HhcCHHHHHHHHHHHHhcCCCCHH
Q 017383          129 KLRRFQEAEDDCTEALNLDDRYIK  152 (372)
Q Consensus       129 ~~g~~~eA~~~~~~Al~l~p~~~~  152 (372)
                      .+|...+|.++|+.+|+|.|++..
T Consensus       177 ~Lg~~~EAKkD~E~vL~LEP~~~E  200 (536)
T KOG4648|consen  177 SLGNNMEAKKDCETVLALEPKNIE  200 (536)
T ss_pred             HHhhHHHHHHhHHHHHhhCcccHH
Confidence            999999999999999999998744

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.98  E-value=2.1e-08  Score=89.20  Aligned_cols=135  Identities=19%  Similarity=0.075  Sum_probs=119.4

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~  138 (372)
                      +.|+.+-|..++...-...|.....  ....|..+-..|.|++|+++|+..++-||. ..++-..-.+...+|+--+|++
T Consensus        64 d~~~~~lAq~C~~~L~~~fp~S~RV--~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk  141 (289)
T KOG3060|consen   64 DTGRDDLAQKCINQLRDRFPGSKRV--GKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIK  141 (289)
T ss_pred             HhcchHHHHHHHHHHHHhCCCChhH--HHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHH
Confidence            6688888999999988777885555  557799999999999999999999999998 6677666667778899999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHH
Q 017383          139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS  196 (372)
Q Consensus       139 ~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~  196 (372)
                      .+..-++..+.+.++|+.++.+|...|+|+.|.-++++++-+.|.++-...+|+++.-
T Consensus       142 ~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Y  199 (289)
T KOG3060|consen  142 ELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLY  199 (289)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999988877777644

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.96  E-value=6.4e-09  Score=98.39  Aligned_cols=111  Identities=21%  Similarity=0.232  Sum_probs=94.3

Q ss_pred             CCCCCchhhHHHHHhhhhcCCCC-------------chHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHH
Q 017383           59 NSYSRNYDPVSHISSSLMNEEST-------------PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRA  124 (372)
Q Consensus        59 y~~g~~~~A~~~~~~al~~~p~~-------------~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la  124 (372)
                      |..|+|..|...|.+++..-+..             ....++.+++.++.++++|..|+.+.+++|.++|+ ..+++.+|
T Consensus       219 fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG  298 (397)
T KOG0543|consen  219 FKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRG  298 (397)
T ss_pred             HhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHH
Confidence            58999999999999988743211             11235789999999999999999999999999998 99999999


Q ss_pred             HHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 017383          125 MAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKE  169 (372)
Q Consensus       125 ~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~  169 (372)
                      .+++.+|+|+.|+.+|++|++++|+|-.+...+..+.....++.+
T Consensus       299 ~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~  343 (397)
T KOG0543|consen  299 QALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEE  343 (397)
T ss_pred             HHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998887777766655544443

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.96  E-value=2.9e-08  Score=88.37  Aligned_cols=127  Identities=20%  Similarity=0.096  Sum_probs=113.8

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~  138 (372)
                      ..|.+++|+++|+..|..+|.+.-.  ++..-.+.-.+|+--+||+....-++..++ ..+|..++.+|+..|+|++|.-
T Consensus        98 a~~~~~~A~e~y~~lL~ddpt~~v~--~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~f  175 (289)
T KOG3060|consen   98 ATGNYKEAIEYYESLLEDDPTDTVI--RKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAF  175 (289)
T ss_pred             HhhchhhHHHHHHHHhccCcchhHH--HHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHH
Confidence            6699999999999999999985444  545555677888888999999999999998 9999999999999999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHccCCCcHHHH
Q 017383          139 DCTEALNLDDRYIKAYSRRATARKELG---KLKESIEDSEFALRLEPQNQEIK  188 (372)
Q Consensus       139 ~~~~Al~l~p~~~~a~~~lg~~~~~lg---~~~~A~~~~~~al~l~P~~~~~~  188 (372)
                      |+++.+-+.|.++-.+.++|.+++-+|   ++.-|..+|.++++++|.+..++
T Consensus       176 ClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral  228 (289)
T KOG3060|consen  176 CLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRAL  228 (289)
T ss_pred             HHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHH
Confidence            999999999999999999999999887   67889999999999999665554

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.96  E-value=1.4e-08  Score=107.19  Aligned_cols=135  Identities=14%  Similarity=0.122  Sum_probs=116.0

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~  138 (372)
                      ..|++++|+.++++++  +|.+.....+..+|..+..+|+|++|++.|+++++.+|+ +.++..++.+|...+++++|+.
T Consensus        80 ~~G~~~~A~~~~eka~--~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~  157 (822)
T PRK14574         80 WAGRDQEVIDVYERYQ--SSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLK  157 (822)
T ss_pred             HcCCcHHHHHHHHHhc--cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHH
Confidence            5599999999999999  555556666667788999999999999999999999999 8888899999999999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHHH
Q 017383          139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSL  197 (372)
Q Consensus       139 ~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~  197 (372)
                      .+++++..+|.+... ..++.++...++..+|+..|++++.++|++.++...+-.+...
T Consensus       158 ~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~  215 (822)
T PRK14574        158 QATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQR  215 (822)
T ss_pred             HHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            999999999996554 5556666667888789999999999999999987666555443

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.94  E-value=1e-08  Score=98.66  Aligned_cols=123  Identities=17%  Similarity=0.040  Sum_probs=97.1

Q ss_pred             CCCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHH----ccCCC-HHHHHHHHHHHHHhcCH
Q 017383           59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSI----ALSPT-AVAYANRAMAYLKLRRF  133 (372)
Q Consensus        59 y~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al----~~~p~-~~~~~~la~~~~~~g~~  133 (372)
                      +..|++++|+..+++++..+|.+..+  +.. +..++..|++..+...+.+++    ..+|. ..++..+|.++..+|++
T Consensus        54 ~~~g~~~~A~~~~~~~l~~~P~~~~a--~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~  130 (355)
T cd05804          54 WIAGDLPKALALLEQLLDDYPRDLLA--LKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQY  130 (355)
T ss_pred             HHcCCHHHHHHHHHHHHHHCCCcHHH--HHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCH
Confidence            46789999999999999999986544  333 555655555555555555544    34454 66777889999999999


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCc
Q 017383          134 QEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN  184 (372)
Q Consensus       134 ~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~  184 (372)
                      ++|+..+++++.++|++..+++.+|.++...|++++|+..+++++...|.+
T Consensus       131 ~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~  181 (355)
T cd05804         131 DRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCS  181 (355)
T ss_pred             HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCC
Confidence            999999999999999999999999999999999999999999999888753

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK11906 transcriptional regulator; Provisional

Probab=98.94  E-value=1.9e-08  Score=97.41  Aligned_cols=123  Identities=11%  Similarity=0.009  Sum_probs=109.9

Q ss_pred             CCCchhhHHHHHhhh---hcCCCCchHHHHHHHHHHHHH---------hhcHHHHHHHHHHHHccCCC-HHHHHHHHHHH
Q 017383           61 YSRNYDPVSHISSSL---MNEESTPDATSEKELGNECFK---------QKKFKEAIDCYSRSIALSPT-AVAYANRAMAY  127 (372)
Q Consensus        61 ~g~~~~A~~~~~~al---~~~p~~~~a~~~~~~g~~~~~---------~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~  127 (372)
                      ..+...|+.+|.+++   .++|....++  ..++.+++.         ..+-.+|.+..++|++++|. +.++..+|.++
T Consensus       271 ~~~~~~Al~lf~ra~~~~~ldp~~a~a~--~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~  348 (458)
T PRK11906        271 PESIYRAMTIFDRLQNKSDIQTLKTECY--CLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLIT  348 (458)
T ss_pred             HHHHHHHHHHHHHHhhcccCCcccHHHH--HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            346778999999999   9999866554  466777654         34567899999999999998 99999999999


Q ss_pred             HHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcH
Q 017383          128 LKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ  185 (372)
Q Consensus       128 ~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~  185 (372)
                      ...++++.|+..|++|+.++|+++.+|+.+|.++...|+.++|...++++++++|.-.
T Consensus       349 ~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~  406 (458)
T PRK11906        349 GLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRR  406 (458)
T ss_pred             HhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhh
Confidence            9999999999999999999999999999999999999999999999999999999753

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.92  E-value=3.4e-08  Score=79.88  Aligned_cols=94  Identities=28%  Similarity=0.121  Sum_probs=86.4

Q ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHHHccCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC---CHHHHHHHH
Q 017383           86 SEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR---YIKAYSRRA  158 (372)
Q Consensus        86 ~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~---~~~a~~~lg  158 (372)
                      +++++|.++-..|+.++|+.+|+++++....    ..++.++|.++..+|++++|+..+++++...|+   +......++
T Consensus         3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A   82 (120)
T PF12688_consen    3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA   82 (120)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence            4679999999999999999999999997544    778999999999999999999999999999888   788888899


Q ss_pred             HHHHHcCCHHHHHHHHHHHHc
Q 017383          159 TARKELGKLKESIEDSEFALR  179 (372)
Q Consensus       159 ~~~~~lg~~~~A~~~~~~al~  179 (372)
                      .++..+|++++|+..+-.++.
T Consensus        83 l~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   83 LALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHCCCHHHHHHHHHHHHH
Confidence            999999999999999988774

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.92  E-value=3.2e-08  Score=94.32  Aligned_cols=130  Identities=18%  Similarity=0.108  Sum_probs=119.0

Q ss_pred             CCCCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHH
Q 017383           58 GNSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEA  136 (372)
Q Consensus        58 ~y~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA  136 (372)
                      .|..||+++|.+.|.++|..+....++  ++++|..+-.+|+.++|+.||-+.-.+--+ +.+++.++.+|..+.+..+|
T Consensus       500 ~f~ngd~dka~~~ykeal~ndasc~ea--lfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqa  577 (840)
T KOG2003|consen  500 AFANGDLDKAAEFYKEALNNDASCTEA--LFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQA  577 (840)
T ss_pred             eeecCcHHHHHHHHHHHHcCchHHHHH--HHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHH
Confidence            478999999999999999988764445  889999999999999999999998887766 99999999999999999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHH
Q 017383          137 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKK  189 (372)
Q Consensus       137 ~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~  189 (372)
                      ++++.++..+-|+++..+..+|.+|-+-|+-..|..++-...+..|.|.+...
T Consensus       578 ie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~ie  630 (840)
T KOG2003|consen  578 IELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIE  630 (840)
T ss_pred             HHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHH
Confidence            99999999999999999999999999999999999999999999998877643

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.92  E-value=4.6e-08  Score=87.02  Aligned_cols=136  Identities=19%  Similarity=0.192  Sum_probs=108.1

Q ss_pred             CCCCCchhhHHHHHhhhhcCCCCchH-HHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC----HHHHHHHHHHHHHhcC-
Q 017383           59 NSYSRNYDPVSHISSSLMNEESTPDA-TSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRR-  132 (372)
Q Consensus        59 y~~g~~~~A~~~~~~al~~~p~~~~a-~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~~la~~~~~~g~-  132 (372)
                      +..|+|.+|+..|++++...|..+.+ .+.+.+|.++++.|+|.+|+..|++.+...|+    ..+++.+|.+++.+.. 
T Consensus        16 ~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~   95 (203)
T PF13525_consen   16 LQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPG   95 (203)
T ss_dssp             HHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCcc
Confidence            46799999999999999988876543 45779999999999999999999999999998    7889999999877643 


Q ss_pred             ----------HHHHHHHHHHHHhcCCCCHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcH
Q 017383          133 ----------FQEAEDDCTEALNLDDRYIK-----------------AYSRRATARKELGKLKESIEDSEFALRLEPQNQ  185 (372)
Q Consensus       133 ----------~~eA~~~~~~Al~l~p~~~~-----------------a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~  185 (372)
                                ..+|+..|+..+...|+...                 --+..|..|...|.|..|+..|+.+++..|+.+
T Consensus        96 ~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~  175 (203)
T PF13525_consen   96 ILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTP  175 (203)
T ss_dssp             HH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSH
T ss_pred             chhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCc
Confidence                      45899999999999998721                 124478888999999999999999999999987


Q ss_pred             HHHHHHHHH
Q 017383          186 EIKKQLAEV  194 (372)
Q Consensus       186 ~~~~~l~~a  194 (372)
                      ....-+...
T Consensus       176 ~~~~al~~l  184 (203)
T PF13525_consen  176 AAEEALARL  184 (203)
T ss_dssp             HHHHHHHHH
T ss_pred             hHHHHHHHH
Confidence            664433333

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.91  E-value=1.2e-08  Score=101.60  Aligned_cols=120  Identities=22%  Similarity=0.238  Sum_probs=103.9

Q ss_pred             CCCCchhhHHHHHhhhhc--------CCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccC--------CC-HHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMN--------EESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALS--------PT-AVAYAN  122 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~--------~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~--------p~-~~~~~~  122 (372)
                      ..|+|+.|+..+..+++.        .|.  -+.....+|..|..+++|.+|+..|++|+.+.        |. +.++.|
T Consensus       211 ~~g~~e~A~~l~k~Al~~l~k~~G~~hl~--va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~n  288 (508)
T KOG1840|consen  211 VQGRLEKAEPLCKQALRILEKTSGLKHLV--VASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNN  288 (508)
T ss_pred             HhccHHHHHHHHHHHHHHHHHccCccCHH--HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            679999999999999997        222  23345679999999999999999999999863        33 888999


Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 017383          123 RAMAYLKLRRFQEAEDDCTEALNLD--------DRYIKAYSRRATARKELGKLKESIEDSEFALRLE  181 (372)
Q Consensus       123 la~~~~~~g~~~eA~~~~~~Al~l~--------p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~  181 (372)
                      ||.+|.+.|+|++|..+|++|+.+.        |.-...+.+++.++..++++++|+.++++++++.
T Consensus       289 La~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~  355 (508)
T KOG1840|consen  289 LAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY  355 (508)
T ss_pred             HHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence            9999999999999999999999873        3446678899999999999999999999999764

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.91  E-value=1.5e-08  Score=87.68  Aligned_cols=104  Identities=20%  Similarity=0.280  Sum_probs=87.4

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCch-HHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcC-----
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPD-ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRR-----  132 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~-a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~-----  132 (372)
                      ..|++++|+.+|++++...|+... +..+..+|.++...|+|++|+.+|.+++...|+ ..++.++|.+|..+|+     
T Consensus        47 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~  126 (172)
T PRK02603         47 ADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEA  126 (172)
T ss_pred             HcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHh
Confidence            679999999999999998766443 567889999999999999999999999999998 8889999999999888     


Q ss_pred             ---------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 017383          133 ---------FQEAEDDCTEALNLDDRYIKAYSRRATARKELGK  166 (372)
Q Consensus       133 ---------~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~  166 (372)
                               +.+|+.++++++.++|++   +...+..+...|+
T Consensus       127 ~~~~~A~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~  166 (172)
T PRK02603        127 GDQDEAEALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR  166 (172)
T ss_pred             hCHHHHHHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence                     678888888888888887   4444555554443

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.91  E-value=2.2e-08  Score=80.44  Aligned_cols=98  Identities=26%  Similarity=0.271  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHH
Q 017383           87 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY----IKAYSRRATAR  161 (372)
Q Consensus        87 ~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~----~~a~~~lg~~~  161 (372)
                      +-..|..+...|+.+.|++.|.++|.+.|. +.+|+|++.++.-.|+.++|+.++++|+++....    ..+|..+|.+|
T Consensus        46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly  125 (175)
T KOG4555|consen   46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY  125 (175)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence            445688888999999999999999999998 9999999999999999999999999999997654    56789999999


Q ss_pred             HHcCCHHHHHHHHHHHHccCCCc
Q 017383          162 KELGKLKESIEDSEFALRLEPQN  184 (372)
Q Consensus       162 ~~lg~~~~A~~~~~~al~l~P~~  184 (372)
                      ..+|+-+.|..+|+.+-++....
T Consensus       126 Rl~g~dd~AR~DFe~AA~LGS~F  148 (175)
T KOG4555|consen  126 RLLGNDDAARADFEAAAQLGSKF  148 (175)
T ss_pred             HHhCchHHHHHhHHHHHHhCCHH
Confidence            99999999999999999887654

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.91  E-value=1.4e-08  Score=87.42  Aligned_cols=95  Identities=25%  Similarity=0.270  Sum_probs=87.8

Q ss_pred             CCCCCCchhhHHHHHhhhhcCCCCc---hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCH
Q 017383           58 GNSYSRNYDPVSHISSSLMNEESTP---DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRF  133 (372)
Q Consensus        58 ~y~~g~~~~A~~~~~~al~~~p~~~---~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~  133 (372)
                      .|..|+|++|...|..+|.+.|...   ....|.++|.++++++.++.||....++|+++|. ..++..||.+|-++.+|
T Consensus       105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~  184 (271)
T KOG4234|consen  105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY  184 (271)
T ss_pred             hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence            4799999999999999999998865   3556889999999999999999999999999998 88899999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCHH
Q 017383          134 QEAEDDCTEALNLDDRYIK  152 (372)
Q Consensus       134 ~eA~~~~~~Al~l~p~~~~  152 (372)
                      ++|+.+|.+.+.++|....
T Consensus       185 eealeDyKki~E~dPs~~e  203 (271)
T KOG4234|consen  185 EEALEDYKKILESDPSRRE  203 (271)
T ss_pred             HHHHHHHHHHHHhCcchHH
Confidence            9999999999999998754

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.91  E-value=1.4e-08  Score=81.26  Aligned_cols=95  Identities=14%  Similarity=0.130  Sum_probs=85.4

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCch-HHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC----HHHHHHHHHHHHHhcCHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPD-ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQ  134 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~-a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~~la~~~~~~g~~~  134 (372)
                      ..|++++|+..|.+++...|++.. ..+++.+|.+++..|+|++|+.+|.+++..+|+    ..++..+|.++..+|+++
T Consensus        14 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~   93 (119)
T TIGR02795        14 KAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKE   93 (119)
T ss_pred             HcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChH
Confidence            679999999999999999887532 445778999999999999999999999999887    678999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCHHHH
Q 017383          135 EAEDDCTEALNLDDRYIKAY  154 (372)
Q Consensus       135 eA~~~~~~Al~l~p~~~~a~  154 (372)
                      +|+..+.+++...|++..+.
T Consensus        94 ~A~~~~~~~~~~~p~~~~~~  113 (119)
T TIGR02795        94 KAKATLQQVIKRYPGSSAAK  113 (119)
T ss_pred             HHHHHHHHHHHHCcCChhHH
Confidence            99999999999999986643

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.89  E-value=8.8e-08  Score=87.54  Aligned_cols=138  Identities=16%  Similarity=0.094  Sum_probs=109.9

Q ss_pred             CCCCCchhhHHHHHhhhhcCCCCchH-HHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC----HHHHHHHHHHHHHhcC-
Q 017383           59 NSYSRNYDPVSHISSSLMNEESTPDA-TSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRR-  132 (372)
Q Consensus        59 y~~g~~~~A~~~~~~al~~~p~~~~a-~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~~la~~~~~~g~-  132 (372)
                      +..|+|++|+..|++++...|..+.+ .+.+.+|.++++.++|++|+..|++.++.+|+    ..+++.+|.++..++. 
T Consensus        43 ~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~  122 (243)
T PRK10866         43 LQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDS  122 (243)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchh
Confidence            36799999999999999999987544 24578999999999999999999999999987    7889999998766541 


Q ss_pred             -----------------HHHHHHHHHHHHhcCCCCHH---H--------------HHHHHHHHHHcCCHHHHHHHHHHHH
Q 017383          133 -----------------FQEAEDDCTEALNLDDRYIK---A--------------YSRRATARKELGKLKESIEDSEFAL  178 (372)
Q Consensus       133 -----------------~~eA~~~~~~Al~l~p~~~~---a--------------~~~lg~~~~~lg~~~~A~~~~~~al  178 (372)
                                       ..+|+..|++.++..|+..-   +              -+..|..|...|.|..|+.-|+.++
T Consensus       123 ~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~  202 (243)
T PRK10866        123 ALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQML  202 (243)
T ss_pred             hhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence                             35788999999999998621   1              2346777889999999999999999


Q ss_pred             ccCCCcHHHHHHHHHHHH
Q 017383          179 RLEPQNQEIKKQLAEVKS  196 (372)
Q Consensus       179 ~l~P~~~~~~~~l~~a~~  196 (372)
                      +-.|+.+....-+.....
T Consensus       203 ~~Yp~t~~~~eal~~l~~  220 (243)
T PRK10866        203 RDYPDTQATRDALPLMEN  220 (243)
T ss_pred             HHCCCCchHHHHHHHHHH
Confidence            999987665444433333

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.87  E-value=6.1e-08  Score=79.92  Aligned_cols=104  Identities=20%  Similarity=0.188  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---HHHHHH
Q 017383           84 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY---IKAYSR  156 (372)
Q Consensus        84 a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~---~~a~~~  156 (372)
                      +..++..|...+..|+|.+|+..|+......|.    ..+...+|.+|++.++|++|+..+++-|+|+|.+   .-+++.
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~   89 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM   89 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence            445789999999999999999999999999986    7889999999999999999999999999999988   467999


Q ss_pred             HHHHHHHcCC---------------HHHHHHHHHHHHccCCCcHHH
Q 017383          157 RATARKELGK---------------LKESIEDSEFALRLEPQNQEI  187 (372)
Q Consensus       157 lg~~~~~lg~---------------~~~A~~~~~~al~l~P~~~~~  187 (372)
                      +|.++.....               ...|...|++++...|++..+
T Consensus        90 ~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya  135 (142)
T PF13512_consen   90 RGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA  135 (142)
T ss_pred             HHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence            9999999887               888888898888888887544

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.86  E-value=4.3e-08  Score=88.75  Aligned_cols=102  Identities=14%  Similarity=0.127  Sum_probs=96.7

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHccCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---HHHHHHHHH
Q 017383           87 EKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY---IKAYSRRAT  159 (372)
Q Consensus        87 ~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~---~~a~~~lg~  159 (372)
                      .++.|..+++.|+|..|...|..-+...|+    +.+++.||.+++.+|+|++|...|..+++-.|+.   +++++-+|.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            778999999999999999999999999998    8999999999999999999999999999998876   678999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHccCCCcHHHH
Q 017383          160 ARKELGKLKESIEDSEFALRLEPQNQEIK  188 (372)
Q Consensus       160 ~~~~lg~~~~A~~~~~~al~l~P~~~~~~  188 (372)
                      +...+|+.++|...|+++++-.|+...+.
T Consensus       224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~  252 (262)
T COG1729         224 SLGRLGNTDEACATLQQVIKRYPGTDAAK  252 (262)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence            99999999999999999999999987654

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.86  E-value=6.5e-08  Score=98.99  Aligned_cols=124  Identities=17%  Similarity=0.188  Sum_probs=109.2

Q ss_pred             hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 017383           83 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATAR  161 (372)
Q Consensus        83 ~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~  161 (372)
                      +...+...|+.++..|++++|+..+.++|.++|. ..+|+.+|.||..+|+.+++..+.-.|-.++|.+..-|..++...
T Consensus       138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls  217 (895)
T KOG2076|consen  138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLS  217 (895)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence            4556778899999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHccCCCcHHHH----------HHHHHHHHHHHHHHHhhh
Q 017383          162 KELGKLKESIEDSEFALRLEPQNQEIK----------KQLAEVKSLYEKEVFQKA  206 (372)
Q Consensus       162 ~~lg~~~~A~~~~~~al~l~P~~~~~~----------~~l~~a~~~~~~~~~~~~  206 (372)
                      ..+|++..|.-+|.+|++++|.+.+..          +.+..|..-+.+.+...|
T Consensus       218 ~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p  272 (895)
T KOG2076|consen  218 EQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP  272 (895)
T ss_pred             HhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence            999999999999999999999997763          444455555555444444

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.85  E-value=1.4e-08  Score=96.72  Aligned_cols=131  Identities=18%  Similarity=0.125  Sum_probs=114.7

Q ss_pred             CCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHH
Q 017383           62 SRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDC  140 (372)
Q Consensus        62 g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~  140 (372)
                      .++.+|-.+...++.++--++.  ++.+.|++.|..|+|++|.+.|..+|.-+.. ..+++|+|..+-.+|+.++|+.+|
T Consensus       470 k~~~~aqqyad~aln~dryn~~--a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f  547 (840)
T KOG2003|consen  470 KDFADAQQYADIALNIDRYNAA--ALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCF  547 (840)
T ss_pred             cchhHHHHHHHHHhcccccCHH--HhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHH
Confidence            3667777777777777654333  4568899999999999999999999998877 999999999999999999999999


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHH
Q 017383          141 TEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV  194 (372)
Q Consensus       141 ~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a  194 (372)
                      -+.-.+--+++.+++.++.+|..+.+...|++++-++..+-|+++.+...|.+.
T Consensus       548 ~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dl  601 (840)
T KOG2003|consen  548 LKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADL  601 (840)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHH
Confidence            998888888999999999999999999999999999999999999887655544

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.81  E-value=2.4e-08  Score=73.25  Aligned_cols=63  Identities=32%  Similarity=0.463  Sum_probs=37.2

Q ss_pred             HHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHH
Q 017383          125 MAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI  187 (372)
Q Consensus       125 ~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~  187 (372)
                      .+|+..++|++|+.++++++.++|+++.+|+.+|.++..+|++.+|..+|++++.+.|++..+
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~   65 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA   65 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence            445555566666666666666666666666666666666666666666666666666655544

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.81  E-value=5.3e-08  Score=89.43  Aligned_cols=143  Identities=17%  Similarity=0.143  Sum_probs=118.1

Q ss_pred             CCCCC-CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC------HHHHHHHHHHH
Q 017383           55 SPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT------AVAYANRAMAY  127 (372)
Q Consensus        55 ~~~~y-~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~------~~~~~~la~~~  127 (372)
                      +|.-| ..|-++.|...|....+....-..  ++..+-++|....+|++||+..++...+.+.      +..|..+|..+
T Consensus       113 L~~Dym~aGl~DRAE~~f~~L~de~efa~~--AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~  190 (389)
T COG2956         113 LGRDYMAAGLLDRAEDIFNQLVDEGEFAEG--ALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQA  190 (389)
T ss_pred             HHHHHHHhhhhhHHHHHHHHHhcchhhhHH--HHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHH
Confidence            33345 567888888888887775533223  3668889999999999999999999998875      78889999999


Q ss_pred             HHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCc-HHHHHHHHHHHHHHH
Q 017383          128 LKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN-QEIKKQLAEVKSLYE  199 (372)
Q Consensus       128 ~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~-~~~~~~l~~a~~~~~  199 (372)
                      ....+++.|+..+.+|++-+|+.+.+-..+|.++...|+|+.|++.++.+++.+|+. +++...|.++...++
T Consensus       191 ~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg  263 (389)
T COG2956         191 LASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLG  263 (389)
T ss_pred             hhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999999999999999999999999999999976 444455555544443

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.80  E-value=1.8e-07  Score=90.08  Aligned_cols=120  Identities=13%  Similarity=-0.030  Sum_probs=98.4

Q ss_pred             CCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHH
Q 017383           62 SRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDC  140 (372)
Q Consensus        62 g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~  140 (372)
                      +....+...+.......|.  ....+..+|.++...|++++|+..++++++++|+ ..++..+|.++...|++++|+..+
T Consensus        94 ~~~~~~~~~l~~~~~~~~~--~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l  171 (355)
T cd05804          94 GMRDHVARVLPLWAPENPD--YWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFM  171 (355)
T ss_pred             cCchhHHHHHhccCcCCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHH
Confidence            3444444444443334444  3445668899999999999999999999999998 889999999999999999999999


Q ss_pred             HHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 017383          141 TEALNLDDRY----IKAYSRRATARKELGKLKESIEDSEFALRLEPQ  183 (372)
Q Consensus       141 ~~Al~l~p~~----~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~  183 (372)
                      .+++...|..    ...|..+|.++...|++++|+..|++++...|.
T Consensus       172 ~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~  218 (355)
T cd05804         172 ESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAE  218 (355)
T ss_pred             HhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccC
Confidence            9999998743    245678999999999999999999999877773

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.79  E-value=6e-08  Score=97.30  Aligned_cols=123  Identities=20%  Similarity=0.275  Sum_probs=115.8

Q ss_pred             CCCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 017383           59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE  137 (372)
Q Consensus        59 y~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~  137 (372)
                      |..++|.++..+++.+++++|-  ....|+.+|.+..+.++++.|..+|.+++.++|+ ..+|+|++.+|.++++-.+|.
T Consensus       496 ~~~~~fs~~~~hle~sl~~npl--q~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~  573 (777)
T KOG1128|consen  496 LSNKDFSEADKHLERSLEINPL--QLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAF  573 (777)
T ss_pred             ccchhHHHHHHHHHHHhhcCcc--chhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHH
Confidence            4679999999999999999998  4555889999999999999999999999999999 999999999999999999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 017383          138 DDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQ  183 (372)
Q Consensus       138 ~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~  183 (372)
                      ..+.+|++-+-.+.+.|-|.-.+....|.++.|+..|.+.+.+.-+
T Consensus       574 ~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~  619 (777)
T KOG1128|consen  574 RKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKK  619 (777)
T ss_pred             HHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhh
Confidence            9999999999999999999999999999999999999999887543

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.79  E-value=3.2e-08  Score=72.62  Aligned_cols=70  Identities=29%  Similarity=0.444  Sum_probs=64.5

Q ss_pred             HHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 017383           90 LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRAT  159 (372)
Q Consensus        90 ~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~  159 (372)
                      +..+|+..++|+.|+.++++++.++|+ +.++..+|.|+..+|++.+|+.+|+++++..|++..+...++.
T Consensus         1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~   71 (73)
T PF13371_consen    1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM   71 (73)
T ss_pred             CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence            357899999999999999999999999 9999999999999999999999999999999999887665543

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.79  E-value=3.9e-07  Score=90.49  Aligned_cols=162  Identities=17%  Similarity=0.208  Sum_probs=131.2

Q ss_pred             HHHHHHHhhHHHHHH-----HHHHHHHHhhhcCCCCCccccccccccCCCCCCCCCCCCchhhHHHHHhhhhcCCCCchH
Q 017383           10 LDFQGFLNDLQDWDL-----SLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGNSYSRNYDPVSHISSSLMNEESTPDA   84 (372)
Q Consensus        10 ~~l~~~~~~l~~~e~-----~ik~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y~~g~~~~A~~~~~~al~~~p~~~~a   84 (372)
                      .|..-|.+.++.||.     .+|-.+..|++.+.-+..+.-++-        +.+.+|+.++|..+...++..++.  ..
T Consensus         6 KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL--------~L~~lg~~~ea~~~vr~glr~d~~--S~   75 (700)
T KOG1156|consen    6 KENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGL--------TLNCLGKKEEAYELVRLGLRNDLK--SH   75 (700)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccc--------hhhcccchHHHHHHHHHHhccCcc--cc
Confidence            344555566655554     456666666655422222221211        235889999999999999999887  45


Q ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 017383           85 TSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKE  163 (372)
Q Consensus        85 ~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~  163 (372)
                      .+|..+|.++...++|++||.||+.|+.++|+ ..+|..++....++|+|+.....-.+.+++.|..-..|...+.++..
T Consensus        76 vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L  155 (700)
T KOG1156|consen   76 VCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHL  155 (700)
T ss_pred             hhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence            56889999999999999999999999999998 99999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHccC
Q 017383          164 LGKLKESIEDSEFALRLE  181 (372)
Q Consensus       164 lg~~~~A~~~~~~al~l~  181 (372)
                      +|++..|....+.-....
T Consensus       156 ~g~y~~A~~il~ef~~t~  173 (700)
T KOG1156|consen  156 LGEYKMALEILEEFEKTQ  173 (700)
T ss_pred             HHHHHHHHHHHHHHHHhh
Confidence            999999988877776654

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.79  E-value=3e-08  Score=98.68  Aligned_cols=127  Identities=23%  Similarity=0.241  Sum_probs=108.5

Q ss_pred             CCCCC-CCCCchhhHHHHHhhhhcCC-----CCc-hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCC--------C-HH
Q 017383           55 SPSGN-SYSRNYDPVSHISSSLMNEE-----STP-DATSEKELGNECFKQKKFKEAIDCYSRSIALSP--------T-AV  118 (372)
Q Consensus        55 ~~~~y-~~g~~~~A~~~~~~al~~~p-----~~~-~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p--------~-~~  118 (372)
                      .|..| .+++|.+|+..|+++|.+-.     .++ -+..+.++|..|++.|+|++|..++++|+++..        . +.
T Consensus       247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~  326 (508)
T KOG1840|consen  247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA  326 (508)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence            34445 78999999999999997432     222 456789999999999999999999999998732        2 77


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 017383          119 AYANRAMAYLKLRRFQEAEDDCTEALNLD--------DRYIKAYSRRATARKELGKLKESIEDSEFALRLE  181 (372)
Q Consensus       119 ~~~~la~~~~~~g~~~eA~~~~~~Al~l~--------p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~  181 (372)
                      .+.+++.++..++++++|+..+++++++.        +.-+..+.++|.+|...|+|++|...|++|+.+.
T Consensus       327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~  397 (508)
T KOG1840|consen  327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL  397 (508)
T ss_pred             HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence            88999999999999999999999999873        2447789999999999999999999999999875

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.78  E-value=4.1e-08  Score=101.14  Aligned_cols=132  Identities=14%  Similarity=0.120  Sum_probs=109.8

Q ss_pred             CCCCCC-CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC---HHHHHHHHHHHHH
Q 017383           54 PSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT---AVAYANRAMAYLK  129 (372)
Q Consensus        54 ~~~~~y-~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~---~~~~~~la~~~~~  129 (372)
                      -+|..| +.-|+..|..+|.+|+++|+.+..+  ....+..|....+++.|.....++-+.+|.   ...|..+|..|+.
T Consensus       497 ~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaea--aaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLe  574 (1238)
T KOG1127|consen  497 FLGQIYRDSDDMKRAKKCFDKAFELDATDAEA--AAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLE  574 (1238)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCchhhhh--HHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccC
Confidence            344444 3347778888888888888875444  447788888888888888887777777765   5566779999999


Q ss_pred             hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHH
Q 017383          130 LRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI  187 (372)
Q Consensus       130 ~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~  187 (372)
                      -+++..|+.+|+.|++.+|.+..+|..+|.+|...|+|..|+..|.++..++|.+.-.
T Consensus       575 a~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~  632 (1238)
T KOG1127|consen  575 AHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYG  632 (1238)
T ss_pred             ccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHH
Confidence            9999999999999999999999999999999999999999999999999999987654

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.77  E-value=6.7e-08  Score=72.26  Aligned_cols=88  Identities=26%  Similarity=0.434  Sum_probs=80.9

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~  138 (372)
                      ..|++++|+..+.+++...|...  ..+..+|.++...|++++|+.+|++++...|. ..++..+|.++...|++++|..
T Consensus        12 ~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   89 (100)
T cd00189          12 KLGDYDEALEYYEKALELDPDNA--DAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALE   89 (100)
T ss_pred             HHhcHHHHHHHHHHHHhcCCccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHH
Confidence            56899999999999999998854  44779999999999999999999999999998 7899999999999999999999


Q ss_pred             HHHHHHhcCCC
Q 017383          139 DCTEALNLDDR  149 (372)
Q Consensus       139 ~~~~Al~l~p~  149 (372)
                      .+.+++..+|.
T Consensus        90 ~~~~~~~~~~~  100 (100)
T cd00189          90 AYEKALELDPN  100 (100)
T ss_pred             HHHHHHccCCC
Confidence            99999998874

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.77  E-value=3.1e-07  Score=84.01  Aligned_cols=115  Identities=16%  Similarity=0.097  Sum_probs=95.8

Q ss_pred             hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---HHHHH
Q 017383           83 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY---IKAYS  155 (372)
Q Consensus        83 ~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~---~~a~~  155 (372)
                      .+..++..|..++..|+|++|+..|++++...|.    ..+.+.+|.+|+++++|++|+..+++.++++|++   ..+++
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y  110 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY  110 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence            4445778999999999999999999999999998    5667999999999999999999999999999887   56799


Q ss_pred             HHHHHHHHcC---------------C---HHHHHHHHHHHHccCCCcHH---HHHHHHHHHHH
Q 017383          156 RRATARKELG---------------K---LKESIEDSEFALRLEPQNQE---IKKQLAEVKSL  197 (372)
Q Consensus       156 ~lg~~~~~lg---------------~---~~~A~~~~~~al~l~P~~~~---~~~~l~~a~~~  197 (372)
                      .+|.++..++               +   ...|+..|++.++..|+..-   +...+..+...
T Consensus       111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~  173 (243)
T PRK10866        111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDR  173 (243)
T ss_pred             HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH
Confidence            9999876665               1   35788999999999998754   34444444443

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.76  E-value=2.1e-07  Score=88.00  Aligned_cols=148  Identities=18%  Similarity=0.186  Sum_probs=110.0

Q ss_pred             CCCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 017383           59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE  137 (372)
Q Consensus        59 y~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~  137 (372)
                      |...++..|+.+-+++++.+|.+..+  +...|+.+...|+.++|+-.|+.|+.+.|. ...|-.+-.||+..|++.+|.
T Consensus       311 ~~~K~~~rAL~~~eK~I~~~~r~~~a--lilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~  388 (564)
T KOG1174|consen  311 YDEKKFERALNFVEKCIDSEPRNHEA--LILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEAN  388 (564)
T ss_pred             hhhhhHHHHHHHHHHHhccCcccchH--HHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHH
Confidence            68889999999999999999997777  457799999999999999999999999998 899999999999999877666


Q ss_pred             HHHH------------------------------------HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 017383          138 DDCT------------------------------------EALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLE  181 (372)
Q Consensus       138 ~~~~------------------------------------~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~  181 (372)
                      ...+                                    +++.++|.+..+-..++..+..-|.++.++..+++.|...
T Consensus       389 ~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~  468 (564)
T KOG1174|consen  389 ALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIF  468 (564)
T ss_pred             HHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhc
Confidence            5544                                    4445555666666666666666666666666666666666


Q ss_pred             CCcHH---------HHHHHHHHHHHHHHHHHhhhhh
Q 017383          182 PQNQE---------IKKQLAEVKSLYEKEVFQKASK  208 (372)
Q Consensus       182 P~~~~---------~~~~l~~a~~~~~~~~~~~~~~  208 (372)
                      |+..-         +...++++...|..++..+|..
T Consensus       469 ~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~  504 (564)
T KOG1174|consen  469 PDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS  504 (564)
T ss_pred             cccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence            65421         1245555555555555555544

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.76  E-value=3.5e-08  Score=71.34  Aligned_cols=64  Identities=27%  Similarity=0.228  Sum_probs=42.7

Q ss_pred             HHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHH
Q 017383          128 LKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQL  191 (372)
Q Consensus       128 ~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l  191 (372)
                      +..|+|++|+..|++++..+|++..+++.+|.++...|++++|...+++++..+|+++.++..+
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~   65 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL   65 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence            4566677777777777777777777777777777777777777777777777777665555443

...

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.76  E-value=2.7e-07  Score=82.05  Aligned_cols=116  Identities=22%  Similarity=0.207  Sum_probs=92.2

Q ss_pred             hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---HHHHH
Q 017383           83 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY---IKAYS  155 (372)
Q Consensus        83 ~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~---~~a~~  155 (372)
                      .+..++..|..++..|+|.+|+..|++.+...|.    ..+.+.+|.++++.|+|.+|+..+++.+...|++   ..+++
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y   83 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY   83 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence            3455789999999999999999999999999987    8899999999999999999999999999999987   56899


Q ss_pred             HHHHHHHHcC-----------CHHHHHHHHHHHHccCCCcHHH---HHHHHHHHHHH
Q 017383          156 RRATARKELG-----------KLKESIEDSEFALRLEPQNQEI---KKQLAEVKSLY  198 (372)
Q Consensus       156 ~lg~~~~~lg-----------~~~~A~~~~~~al~l~P~~~~~---~~~l~~a~~~~  198 (372)
                      .+|.++..+.           ...+|+..|+..+...|+..-+   ...+..+...+
T Consensus        84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~l  140 (203)
T PF13525_consen   84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRL  140 (203)
T ss_dssp             HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHH
Confidence            9999877653           3458999999999999988543   44455544433

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.75  E-value=9.8e-08  Score=88.05  Aligned_cols=94  Identities=13%  Similarity=0.057  Sum_probs=86.0

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCch-HHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC----HHHHHHHHHHHHHhcCHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPD-ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQ  134 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~-a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~~la~~~~~~g~~~  134 (372)
                      ..|+|++|+..|+..+...|+... ..+++.+|.+|+..|+|++|+..|.+++..+|+    ..+++.+|.++..+|+++
T Consensus       155 ~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~  234 (263)
T PRK10803        155 DKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTA  234 (263)
T ss_pred             hcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHH
Confidence            458999999999999999998743 345789999999999999999999999999887    899999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCHHH
Q 017383          135 EAEDDCTEALNLDDRYIKA  153 (372)
Q Consensus       135 eA~~~~~~Al~l~p~~~~a  153 (372)
                      +|+..|+++++..|+...+
T Consensus       235 ~A~~~~~~vi~~yP~s~~a  253 (263)
T PRK10803        235 KAKAVYQQVIKKYPGTDGA  253 (263)
T ss_pred             HHHHHHHHHHHHCcCCHHH
Confidence            9999999999999998654

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.74  E-value=9.6e-08  Score=81.28  Aligned_cols=94  Identities=23%  Similarity=0.219  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcC----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--
Q 017383          100 FKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRR----------FQEAEDDCTEALNLDDRYIKAYSRRATARKELGK--  166 (372)
Q Consensus       100 ~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~----------~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~--  166 (372)
                      |+.|.+.|+.....+|. ++.+++-|.+++.+.+          +++|+.-|+.||.++|+...+++.+|.+|..++.  
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~   86 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT   86 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence            56677777777777777 7777777777776644          5678888899999999999999999999988764  


Q ss_pred             ---------HHHHHHHHHHHHccCCCcHHHHHHHHH
Q 017383          167 ---------LKESIEDSEFALRLEPQNQEIKKQLAE  193 (372)
Q Consensus       167 ---------~~~A~~~~~~al~l~P~~~~~~~~l~~  193 (372)
                               |++|..+|++|...+|+|...+..|+.
T Consensus        87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~  122 (186)
T PF06552_consen   87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEM  122 (186)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence                     888999999999999998766655543

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.73  E-value=1.4e-07  Score=99.09  Aligned_cols=121  Identities=14%  Similarity=0.025  Sum_probs=105.7

Q ss_pred             CCC-CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-H-----------------
Q 017383           57 SGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-A-----------------  117 (372)
Q Consensus        57 ~~y-~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~-----------------  117 (372)
                      ..| ..+++++|+..+..+++..|+....  ++.+|.+++..+++.+|...  .++.+.+. .                 
T Consensus        39 ~~~~~~~~~deai~i~~~~l~~~P~~i~~--yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~  114 (906)
T PRK14720         39 DAYKSENLTDEAKDICEEHLKEHKKSISA--LYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGE  114 (906)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCcceeh--HHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhh
Confidence            345 7899999999999999999995555  66889999998888877666  55555443 3                 


Q ss_pred             --HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 017383          118 --VAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEP  182 (372)
Q Consensus       118 --~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P  182 (372)
                        .+++.+|.||-++|++++|...|+++++++|+++.++.++|..|... ++++|+.++.+|+...-
T Consensus       115 ~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i  180 (906)
T PRK14720        115 NKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI  180 (906)
T ss_pred             hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence              78999999999999999999999999999999999999999999999 99999999999998743

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.73  E-value=4.3e-08  Score=70.84  Aligned_cols=66  Identities=26%  Similarity=0.275  Sum_probs=59.5

Q ss_pred             HHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 017383           94 CFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRAT  159 (372)
Q Consensus        94 ~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~  159 (372)
                      ++..|+|++|+..|++++..+|+ ..+++.+|.||+..|++++|...+.+++..+|+++..+..++.
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            46789999999999999999998 9999999999999999999999999999999998877766654

...

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.72  E-value=5.4e-08  Score=94.15  Aligned_cols=69  Identities=23%  Similarity=0.284  Sum_probs=62.4

Q ss_pred             cCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-H---HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 017383           77 NEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-A---VAYANRAMAYLKLRRFQEAEDDCTEALNLD  147 (372)
Q Consensus        77 ~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~---~~~~~la~~~~~~g~~~eA~~~~~~Al~l~  147 (372)
                      .+|+  .+..++++|.+|+..|+|++|+.+|+++|+++|+ .   .+|+|+|.||..+|++++|+.++++|+++.
T Consensus        70 ~dP~--~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels  142 (453)
T PLN03098         70 ADVK--TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            4666  4555789999999999999999999999999999 5   469999999999999999999999999983

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.72  E-value=1.9e-07  Score=88.26  Aligned_cols=149  Identities=16%  Similarity=0.134  Sum_probs=117.1

Q ss_pred             CCCCCchhhHHHHHhhhhcCCCCchHH--------------------------------HHHHHHHHHHHhhcHHHHHHH
Q 017383           59 NSYSRNYDPVSHISSSLMNEESTPDAT--------------------------------SEKELGNECFKQKKFKEAIDC  106 (372)
Q Consensus        59 y~~g~~~~A~~~~~~al~~~p~~~~a~--------------------------------~~~~~g~~~~~~g~~~~Ai~~  106 (372)
                      |..|++++|+..|+++.-++|.+..++                                -|+--|..++..++|..|+.+
T Consensus       243 ~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~  322 (564)
T KOG1174|consen  243 YYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNF  322 (564)
T ss_pred             hhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHH
Confidence            478999999999999999999764332                                123345556677888888888


Q ss_pred             HHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcH
Q 017383          107 YSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ  185 (372)
Q Consensus       107 y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~  185 (372)
                      -.++|..+|+ ..+|...|..+..+|+.++|+-.|+.|..+.|.....|-.+-.+|...|++.+|....+.+++.-|.+.
T Consensus       323 ~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA  402 (564)
T KOG1174|consen  323 VEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSA  402 (564)
T ss_pred             HHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcch
Confidence            8888888887 788888888888888888888888888888888888888888888888888888888888888888776


Q ss_pred             HHHHH------------HHHHHHHHHHHHHhhhh
Q 017383          186 EIKKQ------------LAEVKSLYEKEVFQKAS  207 (372)
Q Consensus       186 ~~~~~------------l~~a~~~~~~~~~~~~~  207 (372)
                      .....            .++|+..+++++..+|.
T Consensus       403 ~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~  436 (564)
T KOG1174|consen  403 RSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI  436 (564)
T ss_pred             hhhhhhcceeeccCchhHHHHHHHHHhhhccCCc
Confidence            66433            35677777777666653

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.72  E-value=1.8e-07  Score=90.62  Aligned_cols=68  Identities=21%  Similarity=0.143  Sum_probs=65.1

Q ss_pred             cCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 017383          113 LSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKA---YSRRATARKELGKLKESIEDSEFALRL  180 (372)
Q Consensus       113 ~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a---~~~lg~~~~~lg~~~~A~~~~~~al~l  180 (372)
                      .+|+ +.+|+|+|.+|+.+|+|++|+.+|++||+++|++..+   |+++|.+|..+|++++|+.+|++|+.+
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4787 9999999999999999999999999999999999865   999999999999999999999999998

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.71  E-value=1.2e-07  Score=94.09  Aligned_cols=136  Identities=12%  Similarity=0.068  Sum_probs=124.3

Q ss_pred             CCCCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHH
Q 017383           58 GNSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEA  136 (372)
Q Consensus        58 ~y~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA  136 (372)
                      .|..++|...+...+..|...|.+++..+  ..|..+...|+-++|..+...++..|+. ..+|..+|.++..-++|++|
T Consensus        17 ~yE~kQYkkgLK~~~~iL~k~~eHgeslA--mkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~ea   94 (700)
T KOG1156|consen   17 CYETKQYKKGLKLIKQILKKFPEHGESLA--MKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEA   94 (700)
T ss_pred             HHHHHHHHhHHHHHHHHHHhCCccchhHH--hccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHH
Confidence            36678888899999999999999888866  7799999999999999999999999988 88999999999999999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHH
Q 017383          137 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVK  195 (372)
Q Consensus       137 ~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~  195 (372)
                      +.+|+.|+.++|++...|..++....++|+|+.....-.+.+.+.|++...|-.+..+.
T Consensus        95 iKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~  153 (700)
T KOG1156|consen   95 IKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQ  153 (700)
T ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999877765544443

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.71  E-value=2.9e-07  Score=79.25  Aligned_cols=107  Identities=18%  Similarity=0.143  Sum_probs=89.2

Q ss_pred             HHHHhhcHHHHHHHHHHHHccCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCC
Q 017383           93 ECFKQKKFKEAIDCYSRSIALSPT---AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY---IKAYSRRATARKELGK  166 (372)
Q Consensus        93 ~~~~~g~~~~Ai~~y~~al~~~p~---~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~---~~a~~~lg~~~~~lg~  166 (372)
                      -+|-.+.|..+...+...+..++.   +.+|+++|.++..+|++++|+..|.+++.+.|+.   +.+|+++|.++..+|+
T Consensus         8 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~   87 (168)
T CHL00033          8 DNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGE   87 (168)
T ss_pred             ccccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCC
Confidence            345556677777777666666554   8889999999999999999999999999997763   4689999999999999


Q ss_pred             HHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHH
Q 017383          167 LKESIEDSEFALRLEPQNQEIKKQLAEVKSLYE  199 (372)
Q Consensus       167 ~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~~~  199 (372)
                      +++|+..|++++.++|.+...+..+..+.....
T Consensus        88 ~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~  120 (168)
T CHL00033         88 HTKALEYYFQALERNPFLPQALNNMAVICHYRG  120 (168)
T ss_pred             HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence            999999999999999999888766666655443

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.69  E-value=1.2e-06  Score=80.81  Aligned_cols=126  Identities=13%  Similarity=0.055  Sum_probs=104.0

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCc---hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTP---DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQE  135 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~---~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~e  135 (372)
                      ...++.+|++...+...+.+...   -+..+..++..+....+++.|+..+.+|++.+|+ ..+-..+|.+++..|+|..
T Consensus       153 ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~  232 (389)
T COG2956         153 ATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQK  232 (389)
T ss_pred             HhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHH
Confidence            44678888888888877776543   3556778888888888999999999999999988 7777788999999999999


Q ss_pred             HHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcH
Q 017383          136 AEDDCTEALNLDDRY-IKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ  185 (372)
Q Consensus       136 A~~~~~~Al~l~p~~-~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~  185 (372)
                      |++.++.+++.||.+ +.+.-.+..||..+|+.++.+..+.++....++..
T Consensus       233 AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~  283 (389)
T COG2956         233 AVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD  283 (389)
T ss_pred             HHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc
Confidence            999999999999887 56677788899999999999999999888887653

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.68  E-value=4.9e-07  Score=87.38  Aligned_cols=117  Identities=19%  Similarity=0.116  Sum_probs=110.4

Q ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 017383           85 TSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKE  163 (372)
Q Consensus        85 ~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~  163 (372)
                      -+.+..+..++..|++++|...++..+...|+ +..+..++.+++..|+..+|++.+.+++.++|+....+.++|.++..
T Consensus       307 aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~  386 (484)
T COG4783         307 AAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLK  386 (484)
T ss_pred             HHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            34778899999999999999999999999998 88999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHH
Q 017383          164 LGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKE  201 (372)
Q Consensus       164 lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~~~~~  201 (372)
                      .|++.+|+..+...+.-+|+++..|..|.++....++.
T Consensus       387 ~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~  424 (484)
T COG4783         387 GGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNR  424 (484)
T ss_pred             cCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCch
Confidence            99999999999999999999999999999998777653

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=98.67  E-value=4.6e-08  Score=92.39  Aligned_cols=128  Identities=20%  Similarity=0.217  Sum_probs=87.5

Q ss_pred             CCCCCCC-CCCCchhhHHHHHhhhhcC----CCCchHHHHHHHHHHHHHhhc--------------------HHHHHHHH
Q 017383           53 KPSPSGN-SYSRNYDPVSHISSSLMNE----ESTPDATSEKELGNECFKQKK--------------------FKEAIDCY  107 (372)
Q Consensus        53 ~~~~~~y-~~g~~~~A~~~~~~al~~~----p~~~~a~~~~~~g~~~~~~g~--------------------~~~Ai~~y  107 (372)
                      .++|+.+ -.|.|++|+.++.+-|.+.    ....++.+++++|++|...|+                    ++.|+++|
T Consensus        99 gNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy  178 (639)
T KOG1130|consen   99 GNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFY  178 (639)
T ss_pred             ccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHH
Confidence            5677777 6799999999988877533    333456677788888776543                    55667777


Q ss_pred             HHHHccCCC-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHH
Q 017383          108 SRSIALSPT-------AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY------IKAYSRRATARKELGKLKESIEDS  174 (372)
Q Consensus       108 ~~al~~~p~-------~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~------~~a~~~lg~~~~~lg~~~~A~~~~  174 (372)
                      ..-|++...       ..+|-++|..|+-+|+|+.|+..-+.-+.+...+      -.++.++|.+|..+|+++.|+++|
T Consensus       179 ~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehY  258 (639)
T KOG1130|consen  179 MENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHY  258 (639)
T ss_pred             HHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHH
Confidence            766665432       4566777777777777777777776666654433      346677777777777777777777


Q ss_pred             HHHHcc
Q 017383          175 EFALRL  180 (372)
Q Consensus       175 ~~al~l  180 (372)
                      ...+.+
T Consensus       259 K~tl~L  264 (639)
T KOG1130|consen  259 KLTLNL  264 (639)
T ss_pred             HHHHHH
Confidence            776644

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.66  E-value=6.8e-07  Score=90.22  Aligned_cols=132  Identities=14%  Similarity=0.081  Sum_probs=104.5

Q ss_pred             cCCCCchHHHHHHHHHHHHHhhc---HHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhc--------CHHHHHHHHHHHH
Q 017383           77 NEESTPDATSEKELGNECFKQKK---FKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR--------RFQEAEDDCTEAL  144 (372)
Q Consensus        77 ~~p~~~~a~~~~~~g~~~~~~g~---~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g--------~~~eA~~~~~~Al  144 (372)
                      .-|.+..++.++..|..++..++   +..|+.+|++|++++|+ +.+|..++.+|....        +...+.....+++
T Consensus       332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~  411 (517)
T PRK10153        332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV  411 (517)
T ss_pred             cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence            34566688888899988876544   88999999999999999 888988888886653        3455666677766


Q ss_pred             hc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHH----------HHHHHHHHHHHHHHHhhhhhH
Q 017383          145 NL--DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK----------KQLAEVKSLYEKEVFQKASKT  209 (372)
Q Consensus       145 ~l--~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~----------~~l~~a~~~~~~~~~~~~~~~  209 (372)
                      .+  +|..+.+|.-+|..+...|++++|...|++|+.++|+ ..++          ++.++|...|.+++..+|..+
T Consensus       412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p  487 (517)
T PRK10153        412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN  487 (517)
T ss_pred             hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence            64  7788889999999999999999999999999999995 5554          455566667777776666544

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.66  E-value=3.9e-07  Score=88.39  Aligned_cols=114  Identities=12%  Similarity=0.118  Sum_probs=97.5

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~  138 (372)
                      ..+.++.|+..+++....+|.   .  ...++.++...++..+|+..+.+++...|. ..++...|..++..++++.|+.
T Consensus       181 ~t~~~~~ai~lle~L~~~~pe---v--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~  255 (395)
T PF09295_consen  181 LTQRYDEAIELLEKLRERDPE---V--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALE  255 (395)
T ss_pred             hcccHHHHHHHHHHHHhcCCc---H--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence            346788999999998888864   3  335788888888899999999999988887 8888888999999999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 017383          139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFAL  178 (372)
Q Consensus       139 ~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al  178 (372)
                      .+++|+.+.|+...+|+.|+.+|..+|+++.|+..++.+-
T Consensus       256 iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  256 IAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             HHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            9999999999999999999999999999999997776443

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK11906 transcriptional regulator; Provisional

Probab=98.64  E-value=7.8e-07  Score=86.32  Aligned_cols=130  Identities=13%  Similarity=0.014  Sum_probs=105.8

Q ss_pred             cCCCCc---hHH--HHHHHHHHHHHhh---cHHHHHHHHHHHH---ccCCC-HHHHHHHHHHHHHh---------cCHHH
Q 017383           77 NEESTP---DAT--SEKELGNECFKQK---KFKEAIDCYSRSI---ALSPT-AVAYANRAMAYLKL---------RRFQE  135 (372)
Q Consensus        77 ~~p~~~---~a~--~~~~~g~~~~~~g---~~~~Ai~~y~~al---~~~p~-~~~~~~la~~~~~~---------g~~~e  135 (372)
                      ..|.+.   +++  .++.+|...+..+   ..+.|+.+|.+|+   +++|. +.+|..+|.||+..         ....+
T Consensus       243 ~~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~  322 (458)
T PRK11906        243 LAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQK  322 (458)
T ss_pred             CCCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHH
Confidence            335555   565  5667777765444   5678999999999   99999 99999999999876         23567


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHH----------HHHHHHHHHHHHHHHhh
Q 017383          136 AEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK----------KQLAEVKSLYEKEVFQK  205 (372)
Q Consensus       136 A~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~----------~~l~~a~~~~~~~~~~~  205 (372)
                      |.....+|++++|.++.++..+|.++...|+++.|...|++|+.++|+...++          ++.+++...+++++...
T Consensus       323 a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs  402 (458)
T PRK11906        323 ALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLE  402 (458)
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence            88999999999999999999999999999999999999999999999998875          34555666666666655


Q ss_pred             h
Q 017383          206 A  206 (372)
Q Consensus       206 ~  206 (372)
                      |
T Consensus       403 P  403 (458)
T PRK11906        403 P  403 (458)
T ss_pred             c
Confidence            5

>PRK15331 chaperone protein SicA; Provisional

Probab=98.64  E-value=2.3e-07  Score=78.24  Aligned_cols=91  Identities=15%  Similarity=0.109  Sum_probs=82.6

Q ss_pred             CCCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 017383           59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE  137 (372)
Q Consensus        59 y~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~  137 (372)
                      |..|++++|...|+-....+|.+++.  +..+|.++...++|++|+.+|..|..++++ +...+..|.||+.+|+...|+
T Consensus        48 y~~Gk~~eA~~~F~~L~~~d~~n~~Y--~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~  125 (165)
T PRK15331         48 YNQGRLDEAETFFRFLCIYDFYNPDY--TMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKAR  125 (165)
T ss_pred             HHCCCHHHHHHHHHHHHHhCcCcHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHH
Confidence            58899999999999999999986554  779999999999999999999999999988 888999999999999999999


Q ss_pred             HHHHHHHhcCCCCHH
Q 017383          138 DDCTEALNLDDRYIK  152 (372)
Q Consensus       138 ~~~~~Al~l~p~~~~  152 (372)
                      .+|+.++. .|.+..
T Consensus       126 ~~f~~a~~-~~~~~~  139 (165)
T PRK15331        126 QCFELVNE-RTEDES  139 (165)
T ss_pred             HHHHHHHh-CcchHH
Confidence            99999998 455433

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.62  E-value=5.4e-08  Score=72.44  Aligned_cols=61  Identities=21%  Similarity=0.377  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHHHccC---CC-----HHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 017383           85 TSEKELGNECFKQKKFKEAIDCYSRSIALS---PT-----AVAYANRAMAYLKLRRFQEAEDDCTEALN  145 (372)
Q Consensus        85 ~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~---p~-----~~~~~~la~~~~~~g~~~eA~~~~~~Al~  145 (372)
                      .++.++|.+|+..|+|++|+.+|++++.+.   ++     +.++.++|.||..+|++++|+.++++|++
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            344555555555555555555555555431   11     34455555555555555555555555544

...

>TIGR00540 hemY_coli hemY protein

Probab=98.61  E-value=1.4e-06  Score=85.89  Aligned_cols=126  Identities=9%  Similarity=0.002  Sum_probs=111.5

Q ss_pred             CCCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCCH--HHHHHHHHHHHHhcCHHHH
Q 017383           59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTA--VAYANRAMAYLKLRRFQEA  136 (372)
Q Consensus        59 y~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~~--~~~~~la~~~~~~g~~~eA  136 (372)
                      +..|+++.|...+.++.+..|..  ...+...|.++...|+++.|..+|.++.+..|+.  .+...++.+++..|+++.|
T Consensus        95 ~~~g~~~~A~~~l~~~~~~~~~~--~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A  172 (409)
T TIGR00540        95 LAEGDYAKAEKLIAKNADHAAEP--VLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA  172 (409)
T ss_pred             HhCCCHHHHHHHHHHHhhcCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence            47799999999999999988763  3335577999999999999999999999998883  4556679999999999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHH
Q 017383          137 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE  186 (372)
Q Consensus       137 ~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~  186 (372)
                      ...+++.++..|+++.++..++.++...|++++|...+.+.++....++.
T Consensus       173 l~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~  222 (409)
T TIGR00540       173 RHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDE  222 (409)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHH
Confidence            99999999999999999999999999999999999999999988654443

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>TIGR00540 hemY_coli hemY protein

Probab=98.61  E-value=5.2e-07  Score=88.96  Aligned_cols=133  Identities=8%  Similarity=-0.020  Sum_probs=102.1

Q ss_pred             CCCchhhHHHHHhhhhcCCCC--chHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHH--HHHHHHHHHHhcCHHH
Q 017383           61 YSRNYDPVSHISSSLMNEEST--PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVA--YANRAMAYLKLRRFQE  135 (372)
Q Consensus        61 ~g~~~~A~~~~~~al~~~p~~--~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~--~~~la~~~~~~g~~~e  135 (372)
                      .+..+++.+.+..+....|..  .....+..+|..+...|++++|+..++++++..|+ ...  ..-+....+..++...
T Consensus       238 ~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~  317 (409)
T TIGR00540       238 EAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEK  317 (409)
T ss_pred             HHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHH
Confidence            344455677777777777731  13444668899999999999999999999999988 321  2334445556688899


Q ss_pred             HHHHHHHHHhcCCCCH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHccCCCcHHHHHHHHHH
Q 017383          136 AEDDCTEALNLDDRYI--KAYSRRATARKELGKLKESIEDSE--FALRLEPQNQEIKKQLAEV  194 (372)
Q Consensus       136 A~~~~~~Al~l~p~~~--~a~~~lg~~~~~lg~~~~A~~~~~--~al~l~P~~~~~~~~l~~a  194 (372)
                      ++..++++++.+|+++  ..+..+|.++...|++++|..+|+  .++...|++.... .+.++
T Consensus       318 ~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~-~La~l  379 (409)
T TIGR00540       318 LEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLA-MAADA  379 (409)
T ss_pred             HHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHH-HHHHH
Confidence            9999999999999999  788899999999999999999999  6888889876543 44433

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.61  E-value=1.4e-07  Score=82.35  Aligned_cols=104  Identities=19%  Similarity=0.119  Sum_probs=100.3

Q ss_pred             hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 017383           83 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATAR  161 (372)
Q Consensus        83 ~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~  161 (372)
                      .+..++.+|+.|-..|-+.-|.-.|.+++.+.|. +.+++-+|.-+..-|+|+.|.+.|...+++||.+--++.++|.++
T Consensus        64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~  143 (297)
T COG4785          64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL  143 (297)
T ss_pred             HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee
Confidence            5677899999999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHccCCCcHH
Q 017383          162 KELGKLKESIEDSEFALRLEPQNQE  186 (372)
Q Consensus       162 ~~lg~~~~A~~~~~~al~l~P~~~~  186 (372)
                      +--|++.-|.++|.+-..-+|+++-
T Consensus       144 YY~gR~~LAq~d~~~fYQ~D~~DPf  168 (297)
T COG4785         144 YYGGRYKLAQDDLLAFYQDDPNDPF  168 (297)
T ss_pred             eecCchHhhHHHHHHHHhcCCCChH
Confidence            9999999999999999999999875

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.60  E-value=1.6e-07  Score=69.95  Aligned_cols=64  Identities=30%  Similarity=0.381  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 017383          117 AVAYANRAMAYLKLRRFQEAEDDCTEALNLD-------DRYIKAYSRRATARKELGKLKESIEDSEFALRL  180 (372)
Q Consensus       117 ~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~-------p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l  180 (372)
                      +.++.++|.+|..+|+|++|+.+|++++.+.       |..+.+++++|.++..+|++++|+.+|++++++
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            6789999999999999999999999999762       223678999999999999999999999999976

...

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.59  E-value=1.2e-06  Score=82.18  Aligned_cols=125  Identities=14%  Similarity=0.055  Sum_probs=63.2

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhc--CHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR--RFQEA  136 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g--~~~eA  136 (372)
                      ..|++++|+..+.+.     .+.+..+  ..-.+|.+.++++.|...+...-+.+.+ ..+...-|.+.+..|  ++.+|
T Consensus       114 ~~~~~~~AL~~l~~~-----~~lE~~a--l~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A  186 (290)
T PF04733_consen  114 HEGDYEEALKLLHKG-----GSLELLA--LAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDA  186 (290)
T ss_dssp             CCCHHHHHHCCCTTT-----TCHHHHH--HHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHH
T ss_pred             HcCCHHHHHHHHHcc-----CcccHHH--HHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHH
Confidence            445666666555443     1122222  3445556666666666666665555554 222222233333333  35666


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHH
Q 017383          137 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQL  191 (372)
Q Consensus       137 ~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l  191 (372)
                      ...|+......+..+..+..++.++..+|+|++|...+++++..+|++++..-++
T Consensus       187 ~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNl  241 (290)
T PF04733_consen  187 FYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANL  241 (290)
T ss_dssp             HHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHH
T ss_pred             HHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHH
Confidence            6666665555555556666666666666666666666666666666665554443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=98.58  E-value=2.8e-07  Score=87.15  Aligned_cols=129  Identities=17%  Similarity=0.146  Sum_probs=107.3

Q ss_pred             CCCCCCC-CCCCchhhHHHHHhhhhcCCCCc----hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccC----CC---HHHH
Q 017383           53 KPSPSGN-SYSRNYDPVSHISSSLMNEESTP----DATSEKELGNECFKQKKFKEAIDCYSRSIALS----PT---AVAY  120 (372)
Q Consensus        53 ~~~~~~y-~~g~~~~A~~~~~~al~~~p~~~----~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~----p~---~~~~  120 (372)
                      ..+|+.| -+|+|+.|+...+.-|.+.....    .-.++.++|+++.-.|+|+.|+++|.+.+.+.    ..   +..+
T Consensus       199 GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQsc  278 (639)
T KOG1130|consen  199 GNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSC  278 (639)
T ss_pred             cccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHH
Confidence            6777776 88999999999888777654332    22356799999999999999999999987653    22   7788


Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 017383          121 ANRAMAYLKLRRFQEAEDDCTEALNLDD------RYIKAYSRRATARKELGKLKESIEDSEFALRLE  181 (372)
Q Consensus       121 ~~la~~~~~~g~~~eA~~~~~~Al~l~p------~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~  181 (372)
                      +.+|.+|.-+.++++||.++.+-+.+..      .-..+++.+|.++..+|..+.|+.+.++.+++.
T Consensus       279 YSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s  345 (639)
T KOG1130|consen  279 YSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSS  345 (639)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            9999999999999999999999777643      346789999999999999999999988887653

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.58  E-value=1e-06  Score=87.65  Aligned_cols=149  Identities=12%  Similarity=0.080  Sum_probs=125.5

Q ss_pred             CCCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHhcCHHHHHH
Q 017383           59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAED  138 (372)
Q Consensus        59 y~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~~la~~~~~~g~~~eA~~  138 (372)
                      +..||...|...+..+++.+|++.+.  +...-.+.+...+|+.|...|.++-...|...+|..-+.....+++.++|+.
T Consensus       595 w~agdv~~ar~il~~af~~~pnseei--wlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~r  672 (913)
T KOG0495|consen  595 WKAGDVPAARVILDQAFEANPNSEEI--WLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALR  672 (913)
T ss_pred             HhcCCcHHHHHHHHHHHHhCCCcHHH--HHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHH
Confidence            36699999999999999999986555  3355566788889999999999999988888888888888889999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHH----------HHHHHHHHHHHHHHhhhhh
Q 017383          139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKK----------QLAEVKSLYEKEVFQKASK  208 (372)
Q Consensus       139 ~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~----------~l~~a~~~~~~~~~~~~~~  208 (372)
                      .|+++|+..|++.+.|..+|.++..+++.+.|...|...+++.|+....|-          .+-+|+..+.++...+|..
T Consensus       673 llEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~  752 (913)
T KOG0495|consen  673 LLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKN  752 (913)
T ss_pred             HHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCc
Confidence            999999999999999999999999999999999999999999999877653          4445555666665555544


Q ss_pred             H
Q 017383          209 T  209 (372)
Q Consensus       209 ~  209 (372)
                      .
T Consensus       753 ~  753 (913)
T KOG0495|consen  753 A  753 (913)
T ss_pred             c
Confidence            3

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.56  E-value=3.7e-07  Score=79.66  Aligned_cols=95  Identities=21%  Similarity=0.170  Sum_probs=86.0

Q ss_pred             CCCCC-CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcC
Q 017383           55 SPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRR  132 (372)
Q Consensus        55 ~~~~y-~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~  132 (372)
                      .|..| ..|-..-|.-.|.++|.+.|..+++  ++.+|..+...|+|+.|.+.|+-.+++||. --+..|||..++.-|+
T Consensus        71 RGvlYDSlGL~~LAR~DftQaLai~P~m~~v--fNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR  148 (297)
T COG4785          71 RGVLYDSLGLRALARNDFSQALAIRPDMPEV--FNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR  148 (297)
T ss_pred             hcchhhhhhHHHHHhhhhhhhhhcCCCcHHH--HHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCc
Confidence            45556 6788888999999999999996666  779999999999999999999999999999 8899999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCH
Q 017383          133 FQEAEDDCTEALNLDDRYI  151 (372)
Q Consensus       133 ~~eA~~~~~~Al~l~p~~~  151 (372)
                      |.-|.+++.+-.+-||+++
T Consensus       149 ~~LAq~d~~~fYQ~D~~DP  167 (297)
T COG4785         149 YKLAQDDLLAFYQDDPNDP  167 (297)
T ss_pred             hHhhHHHHHHHHhcCCCCh
Confidence            9999999999999888874

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.53  E-value=3.3e-08  Score=91.48  Aligned_cols=97  Identities=31%  Similarity=0.521  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 017383           87 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG  165 (372)
Q Consensus        87 ~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg  165 (372)
                      .+..+...+..|+++.||+.|..+|.++|. +.+|..+|.+++++++...|+.+|..|+.++|+.+..|-.+|.++..+|
T Consensus       117 ~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg  196 (377)
T KOG1308|consen  117 KKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLG  196 (377)
T ss_pred             HHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhh
Confidence            445567788999999999999999999998 9999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHccCCC
Q 017383          166 KLKESIEDSEFALRLEPQ  183 (372)
Q Consensus       166 ~~~~A~~~~~~al~l~P~  183 (372)
                      ++++|..+|+.+++++-+
T Consensus       197 ~~e~aa~dl~~a~kld~d  214 (377)
T KOG1308|consen  197 NWEEAAHDLALACKLDYD  214 (377)
T ss_pred             chHHHHHHHHHHHhcccc
Confidence            999999999999999865

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.51  E-value=2e-06  Score=90.72  Aligned_cols=124  Identities=15%  Similarity=0.080  Sum_probs=102.3

Q ss_pred             cCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCH----
Q 017383           77 NEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYI----  151 (372)
Q Consensus        77 ~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~----  151 (372)
                      .+|.+..+  +..+...+...+++++|+..++.+++..|+ ..+|+.+|.+++..+++.+|...  .++.+.+.+.    
T Consensus        26 ~~p~n~~a--~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~  101 (906)
T PRK14720         26 YSLSKFKE--LDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAI  101 (906)
T ss_pred             CCcchHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhH
Confidence            34554444  668999999999999999999999999999 99999999999999988776655  5555555444    


Q ss_pred             ---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHH---------HHHHHHHHHHHHHHh
Q 017383          152 ---------------KAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKK---------QLAEVKSLYEKEVFQ  204 (372)
Q Consensus       152 ---------------~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~---------~l~~a~~~~~~~~~~  204 (372)
                                     .|++.+|.||..+|++++|...|+++|+++|+|+.+..         .+.+|..++.+++..
T Consensus       102 ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~dL~KA~~m~~KAV~~  178 (906)
T PRK14720        102 VEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEEDKEKAITYLKKAIYR  178 (906)
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence                           89999999999999999999999999999999998843         555666666665544

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.50  E-value=4.5e-06  Score=82.02  Aligned_cols=128  Identities=10%  Similarity=0.017  Sum_probs=104.9

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCCH--HHHHHHHHHHHHhcCHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTA--VAYANRAMAYLKLRRFQEAE  137 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~~--~~~~~la~~~~~~g~~~eA~  137 (372)
                      ..||++.|.....++-+..+. +.. .+...+......|+++.|..+|.++.+.+|+.  ......+..++..|++++|+
T Consensus        96 ~eGd~~~A~k~l~~~~~~~~~-p~l-~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al  173 (398)
T PRK10747         96 AEGDYQQVEKLMTRNADHAEQ-PVV-NYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAAR  173 (398)
T ss_pred             hCCCHHHHHHHHHHHHhcccc-hHH-HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHH
Confidence            569999999777776554422 222 23344566699999999999999999999983  33345589999999999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHH
Q 017383          138 DDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKK  189 (372)
Q Consensus       138 ~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~  189 (372)
                      ..++++++.+|+++.++..++.+|...|++++|+..+.+..+..+.++....
T Consensus       174 ~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~  225 (398)
T PRK10747        174 HGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRA  225 (398)
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHH
Confidence            9999999999999999999999999999999999999999988877655433

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.49  E-value=1.2e-06  Score=88.54  Aligned_cols=115  Identities=23%  Similarity=0.178  Sum_probs=106.3

Q ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 017383           86 SEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKEL  164 (372)
Q Consensus        86 ~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~l  164 (372)
                      .|...|..+...+.-++|..|..++-.++|- +..|+.+|.++...|++++|...|..|+.+||+++.....+|.++...
T Consensus       652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~  731 (799)
T KOG4162|consen  652 LWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLEL  731 (799)
T ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Confidence            3456788888899999999999999999998 999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHH--HHHHHHccCCCcHHHHHHHHHHHHHHHH
Q 017383          165 GKLKESIE--DSEFALRLEPQNQEIKKQLAEVKSLYEK  200 (372)
Q Consensus       165 g~~~~A~~--~~~~al~l~P~~~~~~~~l~~a~~~~~~  200 (372)
                      |+-.-|..  .+..+++++|.|+++|..++++.+..+.
T Consensus       732 G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd  769 (799)
T KOG4162|consen  732 GSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGD  769 (799)
T ss_pred             CCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccc
Confidence            99888888  9999999999999999999988775553

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.49  E-value=5.7e-06  Score=81.33  Aligned_cols=124  Identities=8%  Similarity=-0.014  Sum_probs=102.5

Q ss_pred             CCCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 017383           59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE  137 (372)
Q Consensus        59 y~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~  137 (372)
                      +..|+++.|..+|.++.+.+|+...+. ....+..+...|++++|+..+++.++.+|+ ..++..++.+|...|+|++|+
T Consensus       129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~-~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~  207 (398)
T PRK10747        129 QQRGDEARANQHLERAAELADNDQLPV-EITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLL  207 (398)
T ss_pred             HHCCCHHHHHHHHHHHHhcCCcchHHH-HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHH
Confidence            478999999999999999988754332 224488999999999999999999999998 999999999999999999999


Q ss_pred             HHHHHHHhc------------------------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 017383          138 DDCTEALNL------------------------------------------DDRYIKAYSRRATARKELGKLKESIEDSE  175 (372)
Q Consensus       138 ~~~~~Al~l------------------------------------------~p~~~~a~~~lg~~~~~lg~~~~A~~~~~  175 (372)
                      ..+.+..+.                                          .|+++.++..+|.++...|+.++|...++
T Consensus       208 ~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~  287 (398)
T PRK10747        208 DILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIIL  287 (398)
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            655554432                                          23456677778889999999999999999


Q ss_pred             HHHccCCC
Q 017383          176 FALRLEPQ  183 (372)
Q Consensus       176 ~al~l~P~  183 (372)
                      ++++..|+
T Consensus       288 ~~l~~~~~  295 (398)
T PRK10747        288 DGLKRQYD  295 (398)
T ss_pred             HHHhcCCC
Confidence            99995544

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.45  E-value=1.5e-06  Score=90.00  Aligned_cols=133  Identities=14%  Similarity=0.065  Sum_probs=114.0

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~  138 (372)
                      ...+++.|......+-+..|-....+.|..+|..|...+++.+|+..|+.++..+|+ ..+|..+|.+|...|+|.-|++
T Consensus       538 e~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlK  617 (1238)
T KOG1127|consen  538 EESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALK  617 (1238)
T ss_pred             ccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHH
Confidence            567888888886666666655444445667999999999999999999999999999 9999999999999999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHH
Q 017383          139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLA  192 (372)
Q Consensus       139 ~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~  192 (372)
                      .|++|..++|.+.-+.|..+.....+|+|.+|+..+...+............+.
T Consensus       618 vF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLa  671 (1238)
T KOG1127|consen  618 VFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLA  671 (1238)
T ss_pred             hhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence            999999999999999999999999999999999999999877655444433333

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.43  E-value=4.8e-06  Score=83.00  Aligned_cols=126  Identities=10%  Similarity=-0.022  Sum_probs=116.5

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~  138 (372)
                      ...++++|..++.++....|.   ...|+..++...-+++.++|+..+++||+..|. ..+|..+|.++..+++.+.|..
T Consensus       630 en~e~eraR~llakar~~sgT---eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~  706 (913)
T KOG0495|consen  630 ENDELERARDLLAKARSISGT---ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMARE  706 (913)
T ss_pred             ccccHHHHHHHHHHHhccCCc---chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHH
Confidence            557899999999999887753   455778888889999999999999999999999 9999999999999999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHH
Q 017383          139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK  188 (372)
Q Consensus       139 ~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~  188 (372)
                      .|...++.-|..+..|..++.+-...|....|...++++...+|++...|
T Consensus       707 aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lw  756 (913)
T KOG0495|consen  707 AYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLW  756 (913)
T ss_pred             HHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhH
Confidence            99999999999999999999999999999999999999999999998765

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.40  E-value=1.3e-05  Score=80.81  Aligned_cols=71  Identities=23%  Similarity=0.225  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHH
Q 017383          117 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI  187 (372)
Q Consensus       117 ~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~  187 (372)
                      .++++.+|..|..+|++++|+.++++||...|..++.|+..|.++...|++.+|..+++.|..+++.+.-+
T Consensus       194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyi  264 (517)
T PF12569_consen  194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYI  264 (517)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHH
Confidence            46778899999999999999999999999999999999999999999999999999999999999987655

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.40  E-value=6.6e-06  Score=76.73  Aligned_cols=126  Identities=17%  Similarity=0.153  Sum_probs=92.2

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccC-CCHHHHHHHHHHHHHhcCHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALS-PTAVAYANRAMAYLKLRRFQEAED  138 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~-p~~~~~~~la~~~~~~g~~~eA~~  138 (372)
                      ...||..|+.+++..+..+... +......+|.++|..|+|++|+..|+-+...+ +.+.++.++|.|++.+|.|.+|..
T Consensus        34 s~rDytGAislLefk~~~~~EE-E~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~  112 (557)
T KOG3785|consen   34 SNRDYTGAISLLEFKLNLDREE-EDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKS  112 (557)
T ss_pred             hcccchhHHHHHHHhhccchhh-hHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHH
Confidence            6789999999999988776432 22334467999999999999999999998855 348889999999999999888877


Q ss_pred             HHHHH--------------HhcCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHH
Q 017383          139 DCTEA--------------LNLDDR------------YIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE  186 (372)
Q Consensus       139 ~~~~A--------------l~l~p~------------~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~  186 (372)
                      ...+|              .+++..            ..+-...++.+++..-.|.+|++.|.++|.-+|+...
T Consensus       113 ~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~a  186 (557)
T KOG3785|consen  113 IAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIA  186 (557)
T ss_pred             HHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhh
Confidence            65543              122211            1222344666677777788888888888887776543

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.37  E-value=2.6e-06  Score=68.67  Aligned_cols=90  Identities=17%  Similarity=0.175  Sum_probs=80.9

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-----HHHHHHHHHHHHHhcCHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-----AVAYANRAMAYLKLRRFQ  134 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-----~~~~~~la~~~~~~g~~~  134 (372)
                      ..|+++.|++.|.++|.+.|..+.+  |++++..+.-+|+-++|+..+++++++.-.     ..+|..+|..|..+|+-+
T Consensus        55 E~g~Ld~AlE~F~qal~l~P~raSa--yNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd  132 (175)
T KOG4555|consen   55 EAGDLDGALELFGQALCLAPERASA--YNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDD  132 (175)
T ss_pred             hccchHHHHHHHHHHHHhcccchHh--hccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchH
Confidence            5689999999999999999995555  889999999999999999999999998743     678999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCH
Q 017383          135 EAEDDCTEALNLDDRYI  151 (372)
Q Consensus       135 eA~~~~~~Al~l~p~~~  151 (372)
                      .|..+|+.|-++...++
T Consensus       133 ~AR~DFe~AA~LGS~FA  149 (175)
T KOG4555|consen  133 AARADFEAAAQLGSKFA  149 (175)
T ss_pred             HHHHhHHHHHHhCCHHH
Confidence            99999999988876653

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.37  E-value=3.7e-06  Score=76.32  Aligned_cols=97  Identities=11%  Similarity=0.068  Sum_probs=87.7

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCc-hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC----HHHHHHHHHHHHHhcCHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTP-DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQ  134 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~-~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~~la~~~~~~g~~~  134 (372)
                      ..|+|..|...|..-++..|+.. .+.+++.+|.++|.+|+|++|...|..++.-.|+    +++++.+|.|...+|+.+
T Consensus       153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d  232 (262)
T COG1729         153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD  232 (262)
T ss_pred             HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence            56899999999999999998864 3456889999999999999999999999999887    899999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHH
Q 017383          135 EAEDDCTEALNLDDRYIKAYSR  156 (372)
Q Consensus       135 eA~~~~~~Al~l~p~~~~a~~~  156 (372)
                      +|-..++++++..|....+..-
T Consensus       233 ~A~atl~qv~k~YP~t~aA~~A  254 (262)
T COG1729         233 EACATLQQVIKRYPGTDAAKLA  254 (262)
T ss_pred             HHHHHHHHHHHHCCCCHHHHHH
Confidence            9999999999999998776443

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.35  E-value=4.5e-06  Score=71.18  Aligned_cols=87  Identities=15%  Similarity=0.165  Sum_probs=69.5

Q ss_pred             chhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhh----------cHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcC
Q 017383           64 NYDPVSHISSSLMNEESTPDATSEKELGNECFKQK----------KFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRR  132 (372)
Q Consensus        64 ~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g----------~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~  132 (372)
                      |+.|.+.++.....+|.+  +..+.+.|.++..+.          -+++|+.-|+.||.++|+ ..++.++|.+|..++.
T Consensus         7 FE~ark~aea~y~~nP~D--adnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~   84 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLD--ADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF   84 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHh--HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence            567889999999999995  444668888776553          467899999999999999 9999999999988875


Q ss_pred             -----------HHHHHHHHHHHHhcCCCCHH
Q 017383          133 -----------FQEAEDDCTEALNLDDRYIK  152 (372)
Q Consensus       133 -----------~~eA~~~~~~Al~l~p~~~~  152 (372)
                                 |++|..+|++|...+|++..
T Consensus        85 l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~  115 (186)
T PF06552_consen   85 LTPDTAEAEEYFEKATEYFQKAVDEDPNNEL  115 (186)
T ss_dssp             H---HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred             hcCChHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence                       88899999999999999854

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.35  E-value=3.2e-06  Score=79.13  Aligned_cols=131  Identities=15%  Similarity=0.146  Sum_probs=101.7

Q ss_pred             CCCCCCCCchhhHHHHHhhhhcCCCC----chHHHHHHHHHHHHHh-hcHHHHHHHHHHHHccCC---C----HHHHHHH
Q 017383           56 PSGNSYSRNYDPVSHISSSLMNEEST----PDATSEKELGNECFKQ-KKFKEAIDCYSRSIALSP---T----AVAYANR  123 (372)
Q Consensus        56 ~~~y~~g~~~~A~~~~~~al~~~p~~----~~a~~~~~~g~~~~~~-g~~~~Ai~~y~~al~~~p---~----~~~~~~l  123 (372)
                      +..|..+++++|+.+|++++.+.-..    .-+..+..+|.+|... |++++|+.+|++|+++..   .    ..++.++
T Consensus        82 a~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~  161 (282)
T PF14938_consen   82 ANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKA  161 (282)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHH
Confidence            33455568999999999998743221    2356788999999998 999999999999999742   1    6778899


Q ss_pred             HHHHHHhcCHHHHHHHHHHHHhcCCC------CH-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHH
Q 017383          124 AMAYLKLRRFQEAEDDCTEALNLDDR------YI-KAYSRRATARKELGKLKESIEDSEFALRLEPQNQE  186 (372)
Q Consensus       124 a~~~~~~g~~~eA~~~~~~Al~l~p~------~~-~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~  186 (372)
                      |.++..+|+|++|+..|++.....-+      .+ ..++..+.++...|++..|...|++....+|....
T Consensus       162 A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~  231 (282)
T PF14938_consen  162 ADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS  231 (282)
T ss_dssp             HHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence            99999999999999999999875321      12 34667888999999999999999999999996543

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.35  E-value=2.3e-06  Score=80.10  Aligned_cols=126  Identities=19%  Similarity=0.146  Sum_probs=94.9

Q ss_pred             CCCC-CCCCchhhHHHHHhhhhcCC----CCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccC-----CC--HHHHHHH
Q 017383           56 PSGN-SYSRNYDPVSHISSSLMNEE----STPDATSEKELGNECFKQKKFKEAIDCYSRSIALS-----PT--AVAYANR  123 (372)
Q Consensus        56 ~~~y-~~g~~~~A~~~~~~al~~~p----~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~-----p~--~~~~~~l  123 (372)
                      |+.| ..|++++|...|.++....-    ....+..+...|.+| +.+++++|+.+|++|+.+.     +.  +.++.++
T Consensus        42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~l  120 (282)
T PF14938_consen   42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKEL  120 (282)
T ss_dssp             HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            3445 56899999999999876432    122344455555555 5559999999999999974     22  7889999


Q ss_pred             HHHHHHh-cCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 017383          124 AMAYLKL-RRFQEAEDDCTEALNLDDR------YIKAYSRRATARKELGKLKESIEDSEFALRLEP  182 (372)
Q Consensus       124 a~~~~~~-g~~~eA~~~~~~Al~l~p~------~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P  182 (372)
                      |.+|... |++++|+..|++|+.+...      ...++...|.++..+|+|++|+..|+++....-
T Consensus       121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l  186 (282)
T PF14938_consen  121 AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCL  186 (282)
T ss_dssp             HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhh
Confidence            9999999 9999999999999987421      155678899999999999999999999987543

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.34  E-value=4.7e-06  Score=68.81  Aligned_cols=95  Identities=21%  Similarity=0.233  Sum_probs=84.2

Q ss_pred             CCCCCchhhHHHHHhhhhcCCCCchH-HHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC----HHHHHHHHHHHHHhcC-
Q 017383           59 NSYSRNYDPVSHISSSLMNEESTPDA-TSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRR-  132 (372)
Q Consensus        59 y~~g~~~~A~~~~~~al~~~p~~~~a-~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~~la~~~~~~g~-  132 (372)
                      +..|+|.+|+..|+......|..+.+ .+...+|.+|++.|+|++|+..|++-|+++|.    ..+++.+|++++.+.. 
T Consensus        21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~  100 (142)
T PF13512_consen   21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEG  100 (142)
T ss_pred             HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhh
Confidence            46799999999999999988876533 34679999999999999999999999999997    7889999999999987 


Q ss_pred             --------------HHHHHHHHHHHHhcCCCCHHH
Q 017383          133 --------------FQEAEDDCTEALNLDDRYIKA  153 (372)
Q Consensus       133 --------------~~eA~~~~~~Al~l~p~~~~a  153 (372)
                                    ...|..+|++.+...|+..-+
T Consensus       101 ~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya  135 (142)
T PF13512_consen  101 SLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA  135 (142)
T ss_pred             HHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence                          889999999999999987543

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.29  E-value=2.7e-05  Score=65.30  Aligned_cols=90  Identities=18%  Similarity=0.056  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHccCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---HHHHHHHHH
Q 017383           87 EKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY---IKAYSRRAT  159 (372)
Q Consensus        87 ~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~---~~a~~~lg~  159 (372)
                      .+......+..+++..+...++..+.-+|+    ..+.+.+|.+++..|++++|+..|+.++...|+.   ..+.+++|.
T Consensus        14 ~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~   93 (145)
T PF09976_consen   14 LYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR   93 (145)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence            444555556789999999999999999887    5778889999999999999999999999987655   567889999


Q ss_pred             HHHHcCCHHHHHHHHHH
Q 017383          160 ARKELGKLKESIEDSEF  176 (372)
Q Consensus       160 ~~~~lg~~~~A~~~~~~  176 (372)
                      ++...|++++|+..++.
T Consensus        94 ~~~~~~~~d~Al~~L~~  110 (145)
T PF09976_consen   94 ILLQQGQYDEALATLQQ  110 (145)
T ss_pred             HHHHcCCHHHHHHHHHh
Confidence            99999999999999976

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.29  E-value=8.5e-06  Score=76.41  Aligned_cols=140  Identities=16%  Similarity=0.150  Sum_probs=108.9

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhh--cHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQK--KFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEA  136 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g--~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA  136 (372)
                      .+++++.|...+...-+.+++  ........+.+.+..|  ++.+|.-.|+......+. +.+++.+|.|++.+|+|++|
T Consensus       143 ~~~R~dlA~k~l~~~~~~~eD--~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eA  220 (290)
T PF04733_consen  143 KMNRPDLAEKELKNMQQIDED--SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEA  220 (290)
T ss_dssp             HTT-HHHHHHHHHHHHCCSCC--HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHH
T ss_pred             HcCCHHHHHHHHHHHHhcCCc--HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHH
Confidence            678999999999998888765  4433334445555555  699999999998877655 88899999999999999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHH
Q 017383          137 EDDCTEALNLDDRYIKAYSRRATARKELGKL-KESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEV  202 (372)
Q Consensus       137 ~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~-~~A~~~~~~al~l~P~~~~~~~~l~~a~~~~~~~~  202 (372)
                      +..+..|+..+|+++.++.+++.+...+|+. +.+..++.+....+|+++-. ..+.+....|.+..
T Consensus       221 e~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~-~~~~~~~~~FD~~~  286 (290)
T PF04733_consen  221 EELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV-KDLAEKEAEFDRAV  286 (290)
T ss_dssp             HHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH-HHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998 66777888888899998754 44555555665543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.27  E-value=5.5e-05  Score=68.14  Aligned_cols=126  Identities=21%  Similarity=0.204  Sum_probs=109.7

Q ss_pred             CCCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHc----cCCC---HHHHHHHHHHHHHhc
Q 017383           59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIA----LSPT---AVAYANRAMAYLKLR  131 (372)
Q Consensus        59 y~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~----~~p~---~~~~~~la~~~~~~g  131 (372)
                      ...|+|.-.+..+.++++.+|.. +......+|.+-+..||.+.|..+|++.-+    ++.-   ..+..+.+.+|+..+
T Consensus       188 lG~kEy~iS~d~~~~vi~~~~e~-~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~n  266 (366)
T KOG2796|consen  188 LGMKEYVLSVDAYHSVIKYYPEQ-EPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQN  266 (366)
T ss_pred             hcchhhhhhHHHHHHHHHhCCcc-cHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheeccc
Confidence            47789999999999999988442 444567999999999999999999995543    3321   567788899999999


Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcH
Q 017383          132 RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ  185 (372)
Q Consensus       132 ~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~  185 (372)
                      +|.+|...+.+++..||.++.+..+.+.|+.-+|+...|++..+.++...|...
T Consensus       267 n~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~  320 (366)
T KOG2796|consen  267 NFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY  320 (366)
T ss_pred             chHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence            999999999999999999999999999999999999999999999999999764

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.27  E-value=1.6e-05  Score=73.08  Aligned_cols=96  Identities=21%  Similarity=0.125  Sum_probs=84.7

Q ss_pred             hcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CHHHHHHH
Q 017383           98 KKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG---KLKESIED  173 (372)
Q Consensus        98 g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg---~~~~A~~~  173 (372)
                      ...+.-+.-.+.-|..+|+ +.-|..+|.+|+.+|++..|...|.+|+++.|+++..+..+|.+++...   ...++...
T Consensus       136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~l  215 (287)
T COG4235         136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARAL  215 (287)
T ss_pred             ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence            3467778888899999998 9999999999999999999999999999999999999999999887665   35689999


Q ss_pred             HHHHHccCCCcHHHHHHHHH
Q 017383          174 SEFALRLEPQNQEIKKQLAE  193 (372)
Q Consensus       174 ~~~al~l~P~~~~~~~~l~~  193 (372)
                      |++++.++|+|..+...|.-
T Consensus       216 l~~al~~D~~~iral~lLA~  235 (287)
T COG4235         216 LRQALALDPANIRALSLLAF  235 (287)
T ss_pred             HHHHHhcCCccHHHHHHHHH
Confidence            99999999999988655543

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.25  E-value=1.4e-05  Score=64.73  Aligned_cols=86  Identities=21%  Similarity=0.172  Sum_probs=74.6

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCc-hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC----HHHHHHHHHHHHHhcCHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTP-DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQ  134 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~-~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~~la~~~~~~g~~~  134 (372)
                      ..|+.++|+.+|++++....... ...++..+|..+...|++++|+..+++++...|+    ..+...+++++..+|+++
T Consensus        13 ~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~   92 (120)
T PF12688_consen   13 SLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPK   92 (120)
T ss_pred             hcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHH
Confidence            67999999999999999764432 2456779999999999999999999999998776    566678999999999999


Q ss_pred             HHHHHHHHHHh
Q 017383          135 EAEDDCTEALN  145 (372)
Q Consensus       135 eA~~~~~~Al~  145 (372)
                      +|+..+-.++.
T Consensus        93 eAl~~~l~~la  103 (120)
T PF12688_consen   93 EALEWLLEALA  103 (120)
T ss_pred             HHHHHHHHHHH
Confidence            99999988875

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.23  E-value=1.4e-05  Score=79.00  Aligned_cols=123  Identities=16%  Similarity=0.134  Sum_probs=100.6

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHhcCHHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDD  139 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~~la~~~~~~g~~~eA~~~  139 (372)
                      ..|+|++|.....+.+...|+..++  ++..-.++.+.++|++|+...+.-....-.....+..|.|+++++..++|+.+
T Consensus        24 ~~~e~e~a~k~~~Kil~~~pdd~~a--~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~  101 (652)
T KOG2376|consen   24 KNGEYEEAVKTANKILSIVPDDEDA--IRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKT  101 (652)
T ss_pred             cchHHHHHHHHHHHHHhcCCCcHhh--HhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHH
Confidence            5689999999999999999986666  55667788999999999944333222121233447999999999999999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHH
Q 017383          140 CTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI  187 (372)
Q Consensus       140 ~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~  187 (372)
                      ++   .+++.+..+...+|.+++.+|+|++|+..|+..++-+-++.+.
T Consensus       102 ~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~  146 (652)
T KOG2376|consen  102 LK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDE  146 (652)
T ss_pred             Hh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHH
Confidence            99   6778888899999999999999999999999998877666544

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.22  E-value=7.2e-05  Score=64.14  Aligned_cols=120  Identities=15%  Similarity=0.176  Sum_probs=100.6

Q ss_pred             CchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHcc-CCC-HHHHHHHHHHHHHhcCHHHHHHHH
Q 017383           63 RNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIAL-SPT-AVAYANRAMAYLKLRRFQEAEDDC  140 (372)
Q Consensus        63 ~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~-~p~-~~~~~~la~~~~~~g~~~eA~~~~  140 (372)
                      |-+.......+.++..|.   ..-.+.+|+.+...|+|.+|...|++++.- .-. +..+..++.+.+..+++..|...+
T Consensus        71 dP~R~~Rea~~~~~~ApT---vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tL  147 (251)
T COG4700          71 DPERHLREATEELAIAPT---VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTL  147 (251)
T ss_pred             ChhHHHHHHHHHHhhchh---HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHH
Confidence            344455555666666654   233568999999999999999999999973 333 888999999999999999999999


Q ss_pred             HHHHhcCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcH
Q 017383          141 TEALNLDDRY--IKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ  185 (372)
Q Consensus       141 ~~Al~l~p~~--~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~  185 (372)
                      +...+.+|..  +.....+|.++...|++..|...|+.++...|+..
T Consensus       148 e~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~  194 (251)
T COG4700         148 EDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQ  194 (251)
T ss_pred             HHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHH
Confidence            9999998864  67788899999999999999999999999999853

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.16  E-value=7.5e-06  Score=72.57  Aligned_cols=87  Identities=16%  Similarity=0.084  Sum_probs=79.8

Q ss_pred             CCCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 017383           59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE  137 (372)
Q Consensus        59 y~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~  137 (372)
                      |.-..|..|+.+|.+++.++|.....  +.+.+.++++..+|+.+.....++++++|+ ..+++.+|.+++....|.+|+
T Consensus        21 f~~k~y~~ai~~y~raI~~nP~~~~Y--~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI   98 (284)
T KOG4642|consen   21 FIPKRYDDAIDCYSRAICINPTVASY--YTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAI   98 (284)
T ss_pred             cchhhhchHHHHHHHHHhcCCCcchh--hhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHH
Confidence            46678999999999999999985444  669999999999999999999999999999 999999999999999999999


Q ss_pred             HHHHHHHhcC
Q 017383          138 DDCTEALNLD  147 (372)
Q Consensus       138 ~~~~~Al~l~  147 (372)
                      ..+++|..+.
T Consensus        99 ~~Lqra~sl~  108 (284)
T KOG4642|consen   99 KVLQRAYSLL  108 (284)
T ss_pred             HHHHHHHHHH
Confidence            9999997653

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.14  E-value=8.9e-05  Score=74.75  Aligned_cols=99  Identities=18%  Similarity=0.153  Sum_probs=91.9

Q ss_pred             hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 017383           83 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATAR  161 (372)
Q Consensus        83 ~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~  161 (372)
                      ..|+++.++..|-..|++++|+.+.++||+..|. ...|...|.+|-+.|++.+|..+++.|..+|..+-..-...+..+
T Consensus       193 ~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~  272 (517)
T PF12569_consen  193 LLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYL  272 (517)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence            3467889999999999999999999999999999 999999999999999999999999999999999988888889999


Q ss_pred             HHcCCHHHHHHHHHHHHccC
Q 017383          162 KELGKLKESIEDSEFALRLE  181 (372)
Q Consensus       162 ~~lg~~~~A~~~~~~al~l~  181 (372)
                      .+.|++++|...+..-.+-+
T Consensus       273 LRa~~~e~A~~~~~~Ftr~~  292 (517)
T PF12569_consen  273 LRAGRIEEAEKTASLFTRED  292 (517)
T ss_pred             HHCCCHHHHHHHHHhhcCCC
Confidence            99999999999987765554

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.12  E-value=0.00022  Score=64.40  Aligned_cols=140  Identities=18%  Similarity=0.173  Sum_probs=108.1

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchH-HHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC----HHHHHHHHHHHHHhcC--
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDA-TSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRR--  132 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a-~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~~la~~~~~~g~--  132 (372)
                      ..|++.+|+..|+......|..+.+ .+...++.++++.++|++|+...++-+.+.|+    ..+++.+|.+++..=+  
T Consensus        46 ~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~  125 (254)
T COG4105          46 QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDV  125 (254)
T ss_pred             hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCcc
Confidence            6689999999999999888776543 24568899999999999999999999999886    6778888888775532  


Q ss_pred             ------HHHHHHHHHHHHhcCCCCH-----H----------H--HHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHH
Q 017383          133 ------FQEAEDDCTEALNLDDRYI-----K----------A--YSRRATARKELGKLKESIEDSEFALRLEPQNQEIKK  189 (372)
Q Consensus       133 ------~~eA~~~~~~Al~l~p~~~-----~----------a--~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~  189 (372)
                            ..+|+..+...+...|+..     .          +  =+..|..|...|.+..|+.-++.+++--|+......
T Consensus       126 ~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~e  205 (254)
T COG4105         126 TRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVRE  205 (254)
T ss_pred             ccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHH
Confidence                  4568888899999888761     1          1  123677888899999999999999998887766665


Q ss_pred             HHHHHHHHHH
Q 017383          190 QLAEVKSLYE  199 (372)
Q Consensus       190 ~l~~a~~~~~  199 (372)
                      .|......|.
T Consensus       206 aL~~l~eaY~  215 (254)
T COG4105         206 ALARLEEAYY  215 (254)
T ss_pred             HHHHHHHHHH
Confidence            5555555444

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.09  E-value=5.8e-06  Score=50.95  Aligned_cols=32  Identities=38%  Similarity=0.493  Sum_probs=16.3

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 017383          118 VAYANRAMAYLKLRRFQEAEDDCTEALNLDDR  149 (372)
Q Consensus       118 ~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~  149 (372)
                      .+|+++|.+|..+|++++|+.+|++|++++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            34555555555555555555555555555554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.06  E-value=9.1e-06  Score=53.42  Aligned_cols=42  Identities=33%  Similarity=0.283  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 017383          118 VAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRAT  159 (372)
Q Consensus       118 ~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~  159 (372)
                      .++..+|.+|..+|++++|+..|+++++.+|+++.+|..+|.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            355666666666666666666666666666666666666654

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.06  E-value=3.9e-06  Score=51.91  Aligned_cols=33  Identities=24%  Similarity=0.323  Sum_probs=27.7

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 017383          139 DCTEALNLDDRYIKAYSRRATARKELGKLKESI  171 (372)
Q Consensus       139 ~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~  171 (372)
                      +|++||+++|+++.+|+++|.+|...|++++|+
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            367888888888888888888888888888875

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=98.05  E-value=1e-05  Score=75.71  Aligned_cols=127  Identities=17%  Similarity=0.173  Sum_probs=105.6

Q ss_pred             CCCCC-CCCCchhhHHHHHhhhhcCCCCc----hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-----------HH
Q 017383           55 SPSGN-SYSRNYDPVSHISSSLMNEESTP----DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-----------AV  118 (372)
Q Consensus        55 ~~~~y-~~g~~~~A~~~~~~al~~~p~~~----~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-----------~~  118 (372)
                      +|.++ .++.|+++++.|+++++....+.    +..++..+|..|....||++|+-+..+|.++-.+           ..
T Consensus       128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~  207 (518)
T KOG1941|consen  128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM  207 (518)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence            44455 77899999999999998664443    3346778999999999999999999999987432           56


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 017383          119 AYANRAMAYLKLRRFQEAEDDCTEALNLD------DRYIKAYSRRATARKELGKLKESIEDSEFALRLE  181 (372)
Q Consensus       119 ~~~~la~~~~~~g~~~eA~~~~~~Al~l~------p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~  181 (372)
                      +++.++.++..+|+...|.++|++|.++.      +.++....-+|.+|...|+.+.|..-|+.|...-
T Consensus       208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m  276 (518)
T KOG1941|consen  208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM  276 (518)
T ss_pred             HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence            77889999999999999999999998874      3456667779999999999999999999998653

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=98.04  E-value=4.6e-06  Score=80.75  Aligned_cols=102  Identities=20%  Similarity=0.118  Sum_probs=91.8

Q ss_pred             CCCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 017383           59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE  137 (372)
Q Consensus        59 y~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~  137 (372)
                      +..++|+.|+..|.++++++|+....  +-+++..+.+.++|..|+..+.+||+++|. ..+|+.+|.+...++++.+|.
T Consensus        15 l~~~~fd~avdlysKaI~ldpnca~~--~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~   92 (476)
T KOG0376|consen   15 LKDKVFDVAVDLYSKAIELDPNCAIY--FANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKAL   92 (476)
T ss_pred             cccchHHHHHHHHHHHHhcCCcceee--echhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHH
Confidence            46789999999999999999985444  558889999999999999999999999999 999999999999999999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHH
Q 017383          138 DDCTEALNLDDRYIKAYSRRATARK  162 (372)
Q Consensus       138 ~~~~~Al~l~p~~~~a~~~lg~~~~  162 (372)
                      .+|+....+.|+.+.+...+-.+-.
T Consensus        93 ~~l~~~~~l~Pnd~~~~r~~~Ec~~  117 (476)
T KOG0376|consen   93 LDLEKVKKLAPNDPDATRKIDECNK  117 (476)
T ss_pred             HHHHHhhhcCcCcHHHHHHHHHHHH
Confidence            9999999999999988766655444

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.02  E-value=6.4e-05  Score=74.38  Aligned_cols=122  Identities=12%  Similarity=0.120  Sum_probs=94.2

Q ss_pred             CCCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHcc-------------------------
Q 017383           59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIAL-------------------------  113 (372)
Q Consensus        59 y~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~-------------------------  113 (372)
                      |.++..++|+..+. .  .++.+...  ....|.++|++|+|++|+..|+..++-                         
T Consensus        90 Yrlnk~Dealk~~~-~--~~~~~~~l--l~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~  164 (652)
T KOG2376|consen   90 YRLNKLDEALKTLK-G--LDRLDDKL--LELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLL  164 (652)
T ss_pred             HHcccHHHHHHHHh-c--ccccchHH--HHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHH
Confidence            57788888888888 2  23222223  557799999999999999999887543                         


Q ss_pred             --CCC-----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-------CCC--------HHHHHHHHHHHHHcCCHHHHH
Q 017383          114 --SPT-----AVAYANRAMAYLKLRRFQEAEDDCTEALNLD-------DRY--------IKAYSRRATARKELGKLKESI  171 (372)
Q Consensus       114 --~p~-----~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~-------p~~--------~~a~~~lg~~~~~lg~~~~A~  171 (372)
                        .|.     ...++|.|.++...|+|.+|++.+++|+++.       ..+        ......++.++..+|+.++|.
T Consensus       165 q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~  244 (652)
T KOG2376|consen  165 QSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEAS  244 (652)
T ss_pred             HhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence              121     4678999999999999999999999995441       111        334667899999999999999


Q ss_pred             HHHHHHHccCCCcH
Q 017383          172 EDSEFALRLEPQNQ  185 (372)
Q Consensus       172 ~~~~~al~l~P~~~  185 (372)
                      ..|...++.+|.+.
T Consensus       245 ~iy~~~i~~~~~D~  258 (652)
T KOG2376|consen  245 SIYVDIIKRNPADE  258 (652)
T ss_pred             HHHHHHHHhcCCCc
Confidence            99999999998764

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.01  E-value=0.00036  Score=59.96  Aligned_cols=121  Identities=23%  Similarity=0.305  Sum_probs=63.3

Q ss_pred             CCCchhhHHHHHhhhhcCCCCchHHHHHHHHH-HHHHhhcHHHHHHHHHHHHccCC---C-HHHHHHHHHHHHHhcCHHH
Q 017383           61 YSRNYDPVSHISSSLMNEESTPDATSEKELGN-ECFKQKKFKEAIDCYSRSIALSP---T-AVAYANRAMAYLKLRRFQE  135 (372)
Q Consensus        61 ~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~-~~~~~g~~~~Ai~~y~~al~~~p---~-~~~~~~la~~~~~~g~~~e  135 (372)
                      .+++..++..+..++...+.......  ..+. +++..|+++.|+.+|.+++..+|   . ...+..++..+...+++..
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (291)
T COG0457         108 LGKYEEALELLEKALALDPDPDLAEA--LLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEE  185 (291)
T ss_pred             HhhHHHHHHHHHHHHcCCCCcchHHH--HHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHH
Confidence            34455555555555554444322222  2222 45555555555555555555444   1 4444444444555555555


Q ss_pred             HHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 017383          136 AEDDCTEALNLDDR-YIKAYSRRATARKELGKLKESIEDSEFALRLEPQ  183 (372)
Q Consensus       136 A~~~~~~Al~l~p~-~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~  183 (372)
                      |+..+.+++...+. ....+..++..+...|+++.|...+..++...|.
T Consensus       186 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  234 (291)
T COG0457         186 ALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD  234 (291)
T ss_pred             HHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence            55555555555555 4555555555555555555555555555555554

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.00  E-value=0.00017  Score=70.24  Aligned_cols=109  Identities=22%  Similarity=0.119  Sum_probs=96.9

Q ss_pred             HHHHHHHHhhcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 017383           89 ELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLK  168 (372)
Q Consensus        89 ~~g~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~  168 (372)
                      .+-..+...++|+.|+..+++..+.+|..  ...++.+++..++..+|+..+.+++..+|.+...+...+..+...|+++
T Consensus       174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~  251 (395)
T PF09295_consen  174 TLLKYLSLTQRYDEAIELLEKLRERDPEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYE  251 (395)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHhcCCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Confidence            34445566789999999999999999873  3447889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHccCCCcHHHHHHHHHHHHHHH
Q 017383          169 ESIEDSEFALRLEPQNQEIKKQLAEVKSLYE  199 (372)
Q Consensus       169 ~A~~~~~~al~l~P~~~~~~~~l~~a~~~~~  199 (372)
                      .|+...+++..+.|++...|..|.++....+
T Consensus       252 lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~  282 (395)
T PF09295_consen  252 LALEIAKKAVELSPSEFETWYQLAECYIQLG  282 (395)
T ss_pred             HHHHHHHHHHHhCchhHHHHHHHHHHHHhcC
Confidence            9999999999999999999999988876544

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=98.00  E-value=0.00011  Score=77.51  Aligned_cols=124  Identities=13%  Similarity=0.109  Sum_probs=95.0

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHc---cCCCHHHHHHHHHHHHHhcCHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIA---LSPTAVAYANRAMAYLKLRRFQEA  136 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~---~~p~~~~~~~la~~~~~~g~~~eA  136 (372)
                      ..|+.++|+..|++.+... -.++...+..+-..|...|.+++|..+|+...+   +.|+...|..+..+|.+.|++++|
T Consensus       403 ~~G~~~~A~~lf~~M~~~g-~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA  481 (697)
T PLN03081        403 NHGRGTKAVEMFERMIAEG-VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA  481 (697)
T ss_pred             HcCCHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHH
Confidence            6788999999999877654 234566677778888888899999888888765   345567788888888888888888


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHH
Q 017383          137 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE  186 (372)
Q Consensus       137 ~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~  186 (372)
                      .+.+++. ...| +...|..+..++...|+++.|...+++.+.+.|++..
T Consensus       482 ~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~  529 (697)
T PLN03081        482 YAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLN  529 (697)
T ss_pred             HHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCc
Confidence            8887664 2233 3556778888888888888888888888888887643

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.00  E-value=0.00025  Score=64.04  Aligned_cols=115  Identities=24%  Similarity=0.302  Sum_probs=70.8

Q ss_pred             HHHHHHHHHH----hhcHHHHHHHHHHHHc-cCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 017383           87 EKELGNECFK----QKKFKEAIDCYSRSIA-LSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATAR  161 (372)
Q Consensus        87 ~~~~g~~~~~----~g~~~~Ai~~y~~al~-~~p~~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~  161 (372)
                      +..+|..|.+    .+++.+|.-+|+..-+ ..|.+..+...+.|++.+|+|++|...++.||..+++++.++.++-.+-
T Consensus       172 LtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a  251 (299)
T KOG3081|consen  172 LTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLA  251 (299)
T ss_pred             HHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence            3345544443    3456677777777666 3344677777777777777777777777777777777777777777777


Q ss_pred             HHcCCHHHHHHHHHHHH-ccCCCcHHHHHHHHHHHHHHHHHH
Q 017383          162 KELGKLKESIEDSEFAL-RLEPQNQEIKKQLAEVKSLYEKEV  202 (372)
Q Consensus       162 ~~lg~~~~A~~~~~~al-~l~P~~~~~~~~l~~a~~~~~~~~  202 (372)
                      ..+|.-.++...+-.-+ ...|.++ ...++.+....|++..
T Consensus       252 ~~~Gkd~~~~~r~l~QLk~~~p~h~-~vk~~~ekeaeFDrl~  292 (299)
T KOG3081|consen  252 LHLGKDAEVTERNLSQLKLSHPEHP-FVKHLNEKEAEFDRLV  292 (299)
T ss_pred             HHhCCChHHHHHHHHHHHhcCCcch-HHHHHHHHHHHHHHHH
Confidence            77776655554443333 3344443 3345555555555443

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.99  E-value=1.2e-05  Score=49.46  Aligned_cols=34  Identities=35%  Similarity=0.489  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCc
Q 017383          151 IKAYSRRATARKELGKLKESIEDSEFALRLEPQN  184 (372)
Q Consensus       151 ~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~  184 (372)
                      +.+|+++|.++..+|++++|+.+|+++++++|++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            4689999999999999999999999999999975

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.98  E-value=0.00027  Score=60.74  Aligned_cols=125  Identities=26%  Similarity=0.336  Sum_probs=112.1

Q ss_pred             CCCCCchhhHHHHHhhhhcCCC-CchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC--HHHHHHHHHHHHHhcCHHH
Q 017383           59 NSYSRNYDPVSHISSSLMNEES-TPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT--AVAYANRAMAYLKLRRFQE  135 (372)
Q Consensus        59 y~~g~~~~A~~~~~~al~~~p~-~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~--~~~~~~la~~~~~~g~~~e  135 (372)
                      +..|+++.|+..|.+++..+|. ......+...+..+...++++.|+..+.+++...+.  ...+..++.++...+++..
T Consensus       141 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (291)
T COG0457         141 YELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEE  220 (291)
T ss_pred             HHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHH
Confidence            3789999999999999887763 335555667777788999999999999999999987  7889999999999999999


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 017383          136 AEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQ  183 (372)
Q Consensus       136 A~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~  183 (372)
                      |+..+..++...|.....+..++..+...|.++++...+.+++...|.
T Consensus       221 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         221 ALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD  268 (291)
T ss_pred             HHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            999999999999998888889998888888899999999999999997

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=97.97  E-value=3.3e-05  Score=75.45  Aligned_cols=104  Identities=29%  Similarity=0.257  Sum_probs=92.8

Q ss_pred             hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhc---CHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 017383           83 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR---RFQEAEDDCTEALNLDDRYIKAYSRRA  158 (372)
Q Consensus        83 ~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g---~~~eA~~~~~~Al~l~p~~~~a~~~lg  158 (372)
                      .+..++..|+-.+..+.+..|+..|.+++...|. ...|.|++.++++.+   +.-.|+.+|..|++++|...+++++++
T Consensus       373 ~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la  452 (758)
T KOG1310|consen  373 NIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLA  452 (758)
T ss_pred             HHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHH
Confidence            3445678888888899999999999999999998 889999999998875   566799999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHccCCCcHH
Q 017383          159 TARKELGKLKESIEDSEFALRLEPQNQE  186 (372)
Q Consensus       159 ~~~~~lg~~~~A~~~~~~al~l~P~~~~  186 (372)
                      .++..++++.+|+.+...+....|.+..
T Consensus       453 ~aL~el~r~~eal~~~~alq~~~Ptd~a  480 (758)
T KOG1310|consen  453 RALNELTRYLEALSCHWALQMSFPTDVA  480 (758)
T ss_pred             HHHHHHhhHHHhhhhHHHHhhcCchhhh
Confidence            9999999999999999888888886544

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.96  E-value=7.4e-05  Score=68.46  Aligned_cols=124  Identities=15%  Similarity=0.134  Sum_probs=88.6

Q ss_pred             CCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHH
Q 017383           61 YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDD  139 (372)
Q Consensus        61 ~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~  139 (372)
                      ..+|.+|+.++..-.+.+|.+..+  +..+|.||+...+|..|..||++.-.+.|. ....+.-|..+++.+.|..|+..
T Consensus        23 d~ry~DaI~~l~s~~Er~p~~rAg--LSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV  100 (459)
T KOG4340|consen   23 DARYADAIQLLGSELERSPRSRAG--LSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRV  100 (459)
T ss_pred             HhhHHHHHHHHHHHHhcCccchHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHH
Confidence            356788888888888888765444  558888888888899998999888888887 55555556666677766666654


Q ss_pred             HHHH----------------Hhc--------------CC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHH
Q 017383          140 CTEA----------------LNL--------------DD--RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE  186 (372)
Q Consensus       140 ~~~A----------------l~l--------------~p--~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~  186 (372)
                      ....                |..              -|  +.+....+.|-+.++-|+|++|+.-|+.++....-++-
T Consensus       101 ~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpl  179 (459)
T KOG4340|consen  101 AFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL  179 (459)
T ss_pred             HHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCch
Confidence            3322                111              12  34666777888888888888888888888887765543

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.96  E-value=0.00046  Score=62.32  Aligned_cols=104  Identities=15%  Similarity=0.069  Sum_probs=90.7

Q ss_pred             hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCH---HHHH
Q 017383           83 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYI---KAYS  155 (372)
Q Consensus        83 ~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~---~a~~  155 (372)
                      .+..+++.|...+..|+|.+|+..|+......|.    ..+...++.++++.++|++|+...++-+.+.|+++   -+++
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y  112 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY  112 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence            3456889999999999999999999999999887    78899999999999999999999999999998874   4678


Q ss_pred             HHHHHHHHcC--------CHHHHHHHHHHHHccCCCcHH
Q 017383          156 RRATARKELG--------KLKESIEDSEFALRLEPQNQE  186 (372)
Q Consensus       156 ~lg~~~~~lg--------~~~~A~~~~~~al~l~P~~~~  186 (372)
                      .+|.++...=        -..+|...|+..+...|+..-
T Consensus       113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Y  151 (254)
T COG4105         113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRY  151 (254)
T ss_pred             HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcc
Confidence            8888876432        356899999999999998743

>PLN03218 maturation of RBCL 1; Provisional

Probab=97.91  E-value=0.00036  Score=76.26  Aligned_cols=119  Identities=12%  Similarity=0.045  Sum_probs=58.4

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHhcCHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIAL--SPTAVAYANRAMAYLKLRRFQEAE  137 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~--~p~~~~~~~la~~~~~~g~~~eA~  137 (372)
                      ..|++++|...|.+...... .++...|..+...|.+.|++++|+..|......  .|+...|..+..+|.+.|++++|.
T Consensus       484 k~G~vd~A~~vf~eM~~~Gv-~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~  562 (1060)
T PLN03218        484 KSGKVDAMFEVFHEMVNAGV-EANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAF  562 (1060)
T ss_pred             hCcCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            44555555555555554331 123334445555555555555555555554432  244445555555555555555555


Q ss_pred             HHHHHHHhc----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 017383          138 DDCTEALNL----DDRYIKAYSRRATARKELGKLKESIEDSEFALRL  180 (372)
Q Consensus       138 ~~~~~Al~l----~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l  180 (372)
                      ..+......    .|+ ..+|..+-.+|...|++++|...|+...+.
T Consensus       563 ~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~  608 (1060)
T PLN03218        563 DVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEY  608 (1060)
T ss_pred             HHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence            555554431    222 334444444555555555555555554444

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.90  E-value=2.5e-05  Score=51.28  Aligned_cols=42  Identities=31%  Similarity=0.349  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHH
Q 017383          152 KAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAE  193 (372)
Q Consensus       152 ~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~  193 (372)
                      .+++.+|.+|..+|++++|+..|+++++.+|+|..++..+.+
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            578999999999999999999999999999999999887754

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.89  E-value=3e-05  Score=47.54  Aligned_cols=31  Identities=32%  Similarity=0.443  Sum_probs=13.4

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 017383          119 AYANRAMAYLKLRRFQEAEDDCTEALNLDDR  149 (372)
Q Consensus       119 ~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~  149 (372)
                      +|+.+|.+|+.+|++++|+.+|++++.++|+
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            3444444444444444444444444444443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PLN03218 maturation of RBCL 1; Provisional

Probab=97.87  E-value=0.00054  Score=74.87  Aligned_cols=118  Identities=12%  Similarity=-0.013  Sum_probs=65.1

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHhcCHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIAL--SPTAVAYANRAMAYLKLRRFQEAE  137 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~--~p~~~~~~~la~~~~~~g~~~eA~  137 (372)
                      ..|++++|...|+...+.+.. +....|..+...|.+.|++++|+..|.+..+.  .|+...|..+..+|.+.|++++|.
T Consensus       591 k~G~ldeA~elf~~M~e~gi~-p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~  669 (1060)
T PLN03218        591 NAGQVDRAKEVYQMIHEYNIK-GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAF  669 (1060)
T ss_pred             HCCCHHHHHHHHHHHHHcCCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence            445556666666555554411 23333445555555666666666666555543  344555555555566666666666


Q ss_pred             HHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 017383          138 DDCTEALNLD-DRYIKAYSRRATARKELGKLKESIEDSEFAL  178 (372)
Q Consensus       138 ~~~~~Al~l~-p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al  178 (372)
                      ..+...++.. +-+..+|..+..+|...|++++|...|++..
T Consensus       670 ~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~  711 (1060)
T PLN03218        670 EILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIK  711 (1060)
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            6666655543 2334556666666666666666666666554

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.85  E-value=3.5e-05  Score=47.22  Aligned_cols=34  Identities=38%  Similarity=0.461  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCc
Q 017383          151 IKAYSRRATARKELGKLKESIEDSEFALRLEPQN  184 (372)
Q Consensus       151 ~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~  184 (372)
                      +.+|+.+|.++..+|++++|+.+|++++.++|+|
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            4689999999999999999999999999999986

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.85  E-value=0.00039  Score=59.75  Aligned_cols=117  Identities=17%  Similarity=0.139  Sum_probs=99.4

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC---HHHHHHHHHHHHHhcCHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT---AVAYANRAMAYLKLRRFQEA  136 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~---~~~~~~la~~~~~~g~~~eA  136 (372)
                      .+|++.+|..+|++++.-- --.++..+..+++..+..+++..|...++...+.+|.   ++...-+|.+|..+|++.+|
T Consensus       101 elGr~~EA~~hy~qalsG~-fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~A  179 (251)
T COG4700         101 ELGRYHEAVPHYQQALSGI-FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADA  179 (251)
T ss_pred             HhhhhhhhHHHHHHHhccc-cCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhH
Confidence            7799999999999999733 1125556778999999999999999999999999987   88888899999999999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 017383          137 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFAL  178 (372)
Q Consensus       137 ~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al  178 (372)
                      +..|+.++...|. +.+....|..+..+|+.++|..-+..+.
T Consensus       180 esafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~  220 (251)
T COG4700         180 ESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVV  220 (251)
T ss_pred             HHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence            9999999999887 4566677888999999888876665443

>PLN03077 Protein ECB2; Provisional

Probab=97.82  E-value=0.00052  Score=74.21  Aligned_cols=127  Identities=10%  Similarity=0.104  Sum_probs=96.5

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHc---cCCCHHHHHHHHHHHHHhcCHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIA---LSPTAVAYANRAMAYLKLRRFQEA  136 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~---~~p~~~~~~~la~~~~~~g~~~eA  136 (372)
                      ..|+.++|+..|++..+..- .++...+..+-..|.+.|.+++|..+|+...+   +.|+...|..+..+|.+.|++++|
T Consensus       566 ~~G~~~~A~~lf~~M~~~g~-~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA  644 (857)
T PLN03077        566 AHGKGSMAVELFNRMVESGV-NPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEA  644 (857)
T ss_pred             HcCCHHHHHHHHHHHHHcCC-CCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHH
Confidence            67889999999998776431 23444455666678888999999999988773   356678888888999999999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHH
Q 017383          137 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKK  189 (372)
Q Consensus       137 ~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~  189 (372)
                      .+.+++. .+.|+ ...|..+-.++...|+.+.|....+++++++|++...+-
T Consensus       645 ~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~  695 (857)
T PLN03077        645 YNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYI  695 (857)
T ss_pred             HHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHH
Confidence            9888874 34554 556666666777888888888888888899988766543

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.79  E-value=1.9e-05  Score=48.80  Aligned_cols=32  Identities=44%  Similarity=0.740  Sum_probs=24.7

Q ss_pred             HHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 017383          106 CYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE  137 (372)
Q Consensus       106 ~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~  137 (372)
                      +|+++|+++|+ +.+|+++|.+|...|++++|+
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            46777778887 778888888888888877775

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.79  E-value=0.00018  Score=64.17  Aligned_cols=103  Identities=18%  Similarity=0.198  Sum_probs=86.3

Q ss_pred             CCCCCCCCCCCchhhHHHHHhhhh--------cCCCCchH--------HHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC
Q 017383           53 KPSPSGNSYSRNYDPVSHISSSLM--------NEESTPDA--------TSEKELGNECFKQKKFKEAIDCYSRSIALSPT  116 (372)
Q Consensus        53 ~~~~~~y~~g~~~~A~~~~~~al~--------~~p~~~~a--------~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~  116 (372)
                      ......|..|+|.+|...|..|+.        -.|..++-        -.+.+...|+...|+|-++++.....|..+|.
T Consensus       183 q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~  262 (329)
T KOG0545|consen  183 QEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPG  262 (329)
T ss_pred             HhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCc
Confidence            344455799999999999999874        33443321        13568899999999999999999999999998


Q ss_pred             -HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHH
Q 017383          117 -AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYS  155 (372)
Q Consensus       117 -~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~  155 (372)
                       ..+|+.+|.++...=+..+|..++..+|+++|.-..+-.
T Consensus       263 nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVs  302 (329)
T KOG0545|consen  263 NVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVS  302 (329)
T ss_pred             hHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHH
Confidence             999999999999999999999999999999998766543

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.79  E-value=0.0011  Score=64.47  Aligned_cols=146  Identities=15%  Similarity=0.114  Sum_probs=124.9

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCc--hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHhcCHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTP--DATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAE  137 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~--~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~~la~~~~~~g~~~eA~  137 (372)
                      ...|.+.+...|+.+|++-|+..  .+..|...|....++.+...|...+..||...|...++-..-..-+++++++...
T Consensus       378 e~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcR  457 (677)
T KOG1915|consen  378 EAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCR  457 (677)
T ss_pred             HhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHH
Confidence            45788999999999999998753  3445667788888999999999999999999999777777777788999999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CcHHH-----------HHHHHHHHHHHHHHHHhh
Q 017383          138 DDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEP-QNQEI-----------KKQLAEVKSLYEKEVFQK  205 (372)
Q Consensus       138 ~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P-~~~~~-----------~~~l~~a~~~~~~~~~~~  205 (372)
                      ..|++-|...|.+..+|...|..-..+|+.+.|...|+-|+.... +.++.           .+.+.+++.+|++.+...
T Consensus       458 kLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt  537 (677)
T KOG1915|consen  458 KLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT  537 (677)
T ss_pred             HHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999987643 22333           377888888888877665

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.78  E-value=8.1e-06  Score=75.89  Aligned_cols=90  Identities=22%  Similarity=0.147  Sum_probs=82.2

Q ss_pred             CCCCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHH
Q 017383           58 GNSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEA  136 (372)
Q Consensus        58 ~y~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA  136 (372)
                      ++..|.++.|++.|..++.++|.  .+..|-.+|.++.++++...||..|..+++++|+ +.-|-.+|.++..+|+|++|
T Consensus       124 Aln~G~~~~ai~~~t~ai~lnp~--~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~a  201 (377)
T KOG1308|consen  124 ALNDGEFDTAIELFTSAIELNPP--LAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEA  201 (377)
T ss_pred             HhcCcchhhhhcccccccccCCc--hhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHH
Confidence            46789999999999999999998  4555669999999999999999999999999999 88899999999999999999


Q ss_pred             HHHHHHHHhcCCC
Q 017383          137 EDDCTEALNLDDR  149 (372)
Q Consensus       137 ~~~~~~Al~l~p~  149 (372)
                      -.++..|++++-+
T Consensus       202 a~dl~~a~kld~d  214 (377)
T KOG1308|consen  202 AHDLALACKLDYD  214 (377)
T ss_pred             HHHHHHHHhcccc
Confidence            9999999988743

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.76  E-value=0.00063  Score=63.40  Aligned_cols=145  Identities=13%  Similarity=0.080  Sum_probs=116.0

Q ss_pred             CCCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHcc-CCC----HHHHHHHHHHHHHhcCH
Q 017383           59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIAL-SPT----AVAYANRAMAYLKLRRF  133 (372)
Q Consensus        59 y~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~-~p~----~~~~~~la~~~~~~g~~  133 (372)
                      +..|++-+|...+++.|+..|.  +..+++.--..|+..|+...-...+++.+.. +++    ..+.-.++.++...|-|
T Consensus       114 ~~~g~~h~a~~~wdklL~d~Pt--Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y  191 (491)
T KOG2610|consen  114 WGRGKHHEAAIEWDKLLDDYPT--DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY  191 (491)
T ss_pred             hccccccHHHHHHHHHHHhCch--hhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence            6889999999999999999998  5555667778899999999999999999987 566    34445678899999999


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-------CcH-H-H-----HHHHHHHHHHHH
Q 017383          134 QEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEP-------QNQ-E-I-----KKQLAEVKSLYE  199 (372)
Q Consensus       134 ~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P-------~~~-~-~-----~~~l~~a~~~~~  199 (372)
                      ++|++...+|+++++.+.-+.+..+.++...|++.++.+...+--..--       +|. . +     ..++..+...|.
T Consensus       192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD  271 (491)
T KOG2610|consen  192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD  271 (491)
T ss_pred             hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence            9999999999999999999999999999999999999987765433221       110 0 0     156777777777


Q ss_pred             HHHHhh
Q 017383          200 KEVFQK  205 (372)
Q Consensus       200 ~~~~~~  205 (372)
                      +.+...
T Consensus       272 ~ei~k~  277 (491)
T KOG2610|consen  272 REIWKR  277 (491)
T ss_pred             HHHHHH
Confidence            766543

>PRK04841 transcriptional regulator MalT; Provisional

Probab=97.74  E-value=0.0003  Score=76.36  Aligned_cols=123  Identities=12%  Similarity=0.032  Sum_probs=100.2

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCc---hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-------HHHHHHHHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTP---DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------AVAYANRAMAYLK  129 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~---~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-------~~~~~~la~~~~~  129 (372)
                      ..|++++|...++.++...+...   ...+...+|.++...|++++|..++.+++.....       ..++.++|.+++.
T Consensus       464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~  543 (903)
T PRK04841        464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA  543 (903)
T ss_pred             hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence            67999999999999998544322   2345678899999999999999999999976432       4567889999999


Q ss_pred             hcCHHHHHHHHHHHHhcCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 017383          130 LRRFQEAEDDCTEALNLDDR--------YIKAYSRRATARKELGKLKESIEDSEFALRLEP  182 (372)
Q Consensus       130 ~g~~~eA~~~~~~Al~l~p~--------~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P  182 (372)
                      .|++++|...+.+++.+...        ....+..+|.++...|++++|...+++++.+..
T Consensus       544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~  604 (903)
T PRK04841        544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLS  604 (903)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhh
Confidence            99999999999999886321        233466789999999999999999999987643

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.73  E-value=0.00029  Score=65.49  Aligned_cols=131  Identities=24%  Similarity=0.334  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHHHHHhhhcCCCCCcccc---------c-----cccccC--CCCCCCC-CCCCchhhHHHHHhhhhcCCCC
Q 017383           19 LQDWDLSLNEKDKKMKHKASSKDNLVS---------S-----SLKSAK--KPSPSGN-SYSRNYDPVSHISSSLMNEEST   81 (372)
Q Consensus        19 l~~~e~~ik~~~~~l~~~~~~~~~~~~---------~-----~~~~~~--~~~~~~y-~~g~~~~A~~~~~~al~~~p~~   81 (372)
                      -+.|.+++.+.--.|.+-+..+.....         +     ...++.  +.-|+.| ...+|..|+..|.+.|+..-.+
T Consensus        35 ~Dew~kEm~k~PfFMt~~p~~gd~~~~~~~LqslK~da~E~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D  114 (390)
T KOG0551|consen   35 EDEWEKEMNKVPFFMTRAPSEGDPNPDNVCLQSLKADAEEGEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCAD  114 (390)
T ss_pred             HHHHHHHHhcCcHHHhcCCCCCCCCccHHHHHHhhhccccCChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCC
Confidence            357888888766666655533222100         0     001111  3445554 7789999999999999866444


Q ss_pred             c--hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 017383           82 P--DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR  149 (372)
Q Consensus        82 ~--~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~  149 (372)
                      +  .+..|.+++.+.+-.|+|..|+....+++.++|. ..+++.-|.|++.+.++.+|..+|+..+..+..
T Consensus       115 ~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e  185 (390)
T KOG0551|consen  115 PDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDE  185 (390)
T ss_pred             ccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence            4  4556889999999999999999999999999999 999999999999999999999999998776544

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.68  E-value=0.00051  Score=68.89  Aligned_cols=104  Identities=15%  Similarity=0.042  Sum_probs=84.5

Q ss_pred             CCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-----HHHHHHHHHHHHHhcCHHHH
Q 017383           62 SRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-----AVAYANRAMAYLKLRRFQEA  136 (372)
Q Consensus        62 g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-----~~~~~~la~~~~~~g~~~eA  136 (372)
                      .+.+.|...+......-|+  .+..++..|..+...|+.++|+++|++++.....     ...++.+|.|+..+++|++|
T Consensus       247 ~~~~~a~~lL~~~~~~yP~--s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A  324 (468)
T PF10300_consen  247 VPLEEAEELLEEMLKRYPN--SALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA  324 (468)
T ss_pred             CCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence            4566788888888888887  5556778999999999999999999999864333     56688999999999999999


Q ss_pred             HHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCH
Q 017383          137 EDDCTEALNLDDR-YIKAYSRRATARKELGKL  167 (372)
Q Consensus       137 ~~~~~~Al~l~p~-~~~a~~~lg~~~~~lg~~  167 (372)
                      ..++.+.++.+.- .+-..|..|.++..+|+.
T Consensus       325 ~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~  356 (468)
T PF10300_consen  325 AEYFLRLLKESKWSKAFYAYLAAACLLMLGRE  356 (468)
T ss_pred             HHHHHHHHhccccHHHHHHHHHHHHHHhhccc
Confidence            9999999986543 334455678899999988

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.66  E-value=0.0019  Score=57.50  Aligned_cols=134  Identities=11%  Similarity=0.059  Sum_probs=104.3

Q ss_pred             CCCCCCCCCCchhhHHHHHhhhhcCCCCch----HHHHHHHHHHHHHh-hcHHHHHHHHHHHHccCCC-------HHHHH
Q 017383           54 PSPSGNSYSRNYDPVSHISSSLMNEESTPD----ATSEKELGNECFKQ-KKFKEAIDCYSRSIALSPT-------AVAYA  121 (372)
Q Consensus        54 ~~~~~y~~g~~~~A~~~~~~al~~~p~~~~----a~~~~~~g~~~~~~-g~~~~Ai~~y~~al~~~p~-------~~~~~  121 (372)
                      ..+++|..++..+|+.++++++++..+...    +..+..+|.+|-.. .++++||.+|+++-+....       ..++.
T Consensus        79 eA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~l  158 (288)
T KOG1586|consen   79 EAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLL  158 (288)
T ss_pred             HHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHH
Confidence            345667888999999999999998765543    33466889888765 9999999999999887644       34455


Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhcCCCC------HHH-HHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHH
Q 017383          122 NRAMAYLKLRRFQEAEDDCTEALNLDDRY------IKA-YSRRATARKELGKLKESIEDSEFALRLEPQNQEI  187 (372)
Q Consensus       122 ~la~~~~~~g~~~eA~~~~~~Al~l~p~~------~~a-~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~  187 (372)
                      ..|..-..+++|.+|+..|++...-.-++      ++- ++.-|.|+...++.-.+...+++...++|.....
T Consensus       159 KvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds  231 (288)
T KOG1586|consen  159 KVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS  231 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence            55666678899999999999987765444      233 4456788888899999999999999999987654

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=97.63  E-value=0.00012  Score=72.54  Aligned_cols=106  Identities=20%  Similarity=0.202  Sum_probs=95.0

Q ss_pred             HHHHHHHhhcHHHHHHHHHHHHccCCC--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 017383           90 LGNECFKQKKFKEAIDCYSRSIALSPT--AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKL  167 (372)
Q Consensus        90 ~g~~~~~~g~~~~Ai~~y~~al~~~p~--~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~  167 (372)
                      .|..+...|+-..|+.|+..|+...|.  .....++|.++++-|-...|-..+.+++.++-.-+-.++.+|.++..+.+.
T Consensus       613 aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i  692 (886)
T KOG4507|consen  613 AGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNI  692 (886)
T ss_pred             ccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhh
Confidence            344445689999999999999999997  666899999999999999999999999999988888899999999999999


Q ss_pred             HHHHHHHHHHHccCCCcHHHHHHHHHHH
Q 017383          168 KESIEDSEFALRLEPQNQEIKKQLAEVK  195 (372)
Q Consensus       168 ~~A~~~~~~al~l~P~~~~~~~~l~~a~  195 (372)
                      +.|++.|+.|++++|+++++...|..+.
T Consensus       693 ~~a~~~~~~a~~~~~~~~~~~~~l~~i~  720 (886)
T KOG4507|consen  693 SGALEAFRQALKLTTKCPECENSLKLIR  720 (886)
T ss_pred             HHHHHHHHHHHhcCCCChhhHHHHHHHH
Confidence            9999999999999999999987776654

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=97.63  E-value=0.00081  Score=71.00  Aligned_cols=119  Identities=14%  Similarity=0.044  Sum_probs=99.1

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHhcCHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIAL--SPTAVAYANRAMAYLKLRRFQEAE  137 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~--~p~~~~~~~la~~~~~~g~~~eA~  137 (372)
                      ..|++++|...|++..+.     +...|+.+...|.+.|++++|+..|++.+..  .|+...|..+-.++.+.|..++|.
T Consensus       372 k~G~~~~A~~vf~~m~~~-----d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~  446 (697)
T PLN03081        372 KWGRMEDARNVFDRMPRK-----NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGW  446 (697)
T ss_pred             HCCCHHHHHHHHHhCCCC-----CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHH
Confidence            679999999999987652     3445789999999999999999999998764  577888988999999999999999


Q ss_pred             HHHHHHHhcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCc
Q 017383          138 DDCTEALNLDD--RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN  184 (372)
Q Consensus       138 ~~~~~Al~l~p--~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~  184 (372)
                      ..|+...+..+  -+...|..+..++...|++++|.+.+++. ...|+.
T Consensus       447 ~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p~~  494 (697)
T PLN03081        447 EIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKPTV  494 (697)
T ss_pred             HHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCCCH
Confidence            99999986432  23456888999999999999999999874 345553

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.59  E-value=0.002  Score=53.76  Aligned_cols=91  Identities=24%  Similarity=0.156  Sum_probs=70.9

Q ss_pred             HHHHHHHHhhcHHHHHHHHHHHHccCCC-----------------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 017383           89 ELGNECFKQKKFKEAIDCYSRSIALSPT-----------------------AVAYANRAMAYLKLRRFQEAEDDCTEALN  145 (372)
Q Consensus        89 ~~g~~~~~~g~~~~Ai~~y~~al~~~p~-----------------------~~~~~~la~~~~~~g~~~eA~~~~~~Al~  145 (372)
                      ..|......|+...++..+.+++.+...                       ..++..++..+...|++++|+..+++++.
T Consensus        11 ~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~   90 (146)
T PF03704_consen   11 REARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALA   90 (146)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence            3455566677888888888888887422                       13455577788899999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 017383          146 LDDRYIKAYSRRATARKELGKLKESIEDSEFALR  179 (372)
Q Consensus       146 l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~  179 (372)
                      ++|.+-.+|..+-.+|...|+..+|+..|+++..
T Consensus        91 ~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   91 LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999987643

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=97.58  E-value=0.0011  Score=62.32  Aligned_cols=156  Identities=16%  Similarity=0.074  Sum_probs=116.8

Q ss_pred             HHHhhHHHHHHHHHHHHHHhhhcCCCCCccccccccccCCCCCCCC-CCCCchhhHHHHHh----hhhcCCCCchHHHHH
Q 017383           14 GFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISS----SLMNEESTPDATSEK   88 (372)
Q Consensus        14 ~~~~~l~~~e~~ik~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~~A~~~~~~----al~~~p~~~~a~~~~   88 (372)
                      ++-+.+..|.+.+.+.++.+.+....             +.+..+. .+|.|.+++.+.-.    +...+.......++.
T Consensus        21 ~~~~al~~w~~~L~~l~~~~~Rf~~l-------------G~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~l   87 (518)
T KOG1941|consen   21 QTEKALQVWTKVLEKLSDLMGRFRVL-------------GCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYL   87 (518)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHh-------------ccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56688899999999888876444300             1112222 56777776655433    333443333445678


Q ss_pred             HHHHHHHHhhcHHHHHHHHHHHHccC---CC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------HHHHHH
Q 017383           89 ELGNECFKQKKFKEAIDCYSRSIALS---PT---AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY------IKAYSR  156 (372)
Q Consensus        89 ~~g~~~~~~g~~~~Ai~~y~~al~~~---p~---~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~------~~a~~~  156 (372)
                      +++..+.+.-+|.+++.+-.-.+.+-   |.   ..+...+|.+++.++.|+++++.|+.|++...++      ..++..
T Consensus        88 nlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~  167 (518)
T KOG1941|consen   88 NLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVS  167 (518)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhh
Confidence            99999999999999999998888863   32   5667779999999999999999999999875443      456889


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHccCC
Q 017383          157 RATARKELGKLKESIEDSEFALRLEP  182 (372)
Q Consensus       157 lg~~~~~lg~~~~A~~~~~~al~l~P  182 (372)
                      +|..+..+.++++|+.+..+|+.+--
T Consensus       168 Lgslf~~l~D~~Kal~f~~kA~~lv~  193 (518)
T KOG1941|consen  168 LGSLFAQLKDYEKALFFPCKAAELVN  193 (518)
T ss_pred             HHHHHHHHHhhhHHhhhhHhHHHHHH
Confidence            99999999999999999999988753

>PRK04841 transcriptional regulator MalT; Provisional

Probab=97.55  E-value=0.0012  Score=71.72  Aligned_cols=121  Identities=14%  Similarity=0.021  Sum_probs=97.4

Q ss_pred             CCCCchhhHHHHHhhhhcCCC-------CchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC------HHHHHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEES-------TPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT------AVAYANRAMA  126 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~-------~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~------~~~~~~la~~  126 (372)
                      ..|++++|...+..+....+.       .........+|.+++..|++++|..++++++...+.      ..++..+|.+
T Consensus       421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~  500 (903)
T PRK04841        421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEV  500 (903)
T ss_pred             HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence            668999999999887654221       113344556788999999999999999999986543      3567889999


Q ss_pred             HHHhcCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 017383          127 YLKLRRFQEAEDDCTEALNLDDRY------IKAYSRRATARKELGKLKESIEDSEFALRL  180 (372)
Q Consensus       127 ~~~~g~~~eA~~~~~~Al~l~p~~------~~a~~~lg~~~~~lg~~~~A~~~~~~al~l  180 (372)
                      +...|++++|...+++++.+....      ..++..+|.++...|++++|...+++++.+
T Consensus       501 ~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~  560 (903)
T PRK04841        501 HHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQL  560 (903)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            999999999999999999764321      346778899999999999999999999886

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.52  E-value=0.0017  Score=51.65  Aligned_cols=92  Identities=24%  Similarity=0.316  Sum_probs=70.8

Q ss_pred             HHHHHHHHhhcHHHHHHHHHHHHccC---CC----------HHHHHHHHHHHHHhcCHHHHHHHHHHHHh-------cCC
Q 017383           89 ELGNECFKQKKFKEAIDCYSRSIALS---PT----------AVAYANRAMAYLKLRRFQEAEDDCTEALN-------LDD  148 (372)
Q Consensus        89 ~~g~~~~~~g~~~~Ai~~y~~al~~~---p~----------~~~~~~la~~~~~~g~~~eA~~~~~~Al~-------l~p  148 (372)
                      ..|.-.+..|-|++|...|.++++..   |.          +-++..|+.++..+|+|++++....++|.       |+.
T Consensus        14 s~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~q   93 (144)
T PF12968_consen   14 SDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQ   93 (144)
T ss_dssp             HHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTS
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccc
Confidence            33455667899999999999999864   22          45678899999999999998888887775       344


Q ss_pred             CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 017383          149 RY----IKAYSRRATARKELGKLKESIEDSEFALRL  180 (372)
Q Consensus       149 ~~----~~a~~~lg~~~~~lg~~~~A~~~~~~al~l  180 (372)
                      +.    ..+.+++|.++..+|+.++|+..|+++-++
T Consensus        94 deGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   94 DEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             THHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            43    456678999999999999999999988654

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.50  E-value=0.00053  Score=62.97  Aligned_cols=112  Identities=17%  Similarity=0.215  Sum_probs=74.3

Q ss_pred             CCCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 017383           59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE  137 (372)
Q Consensus        59 y~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~  137 (372)
                      |..+|+..+..+.++.    |...++....+.|-..++.|+|+.|+..|+.|++..-- +.+-+++|.|++..|+|..|+
T Consensus       123 Yse~Dl~g~rsLveQl----p~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasAL  198 (459)
T KOG4340|consen  123 YSEGDLPGSRSLVEQL----PSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASAL  198 (459)
T ss_pred             cccccCcchHHHHHhc----cCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHH
Confidence            4445555544443332    32234555667888888888888888888888887654 666678888888888888888


Q ss_pred             HHHHHHHhc----CCCC-------------------------HHHHHHHHHHHHHcCCHHHHHHHH
Q 017383          138 DDCTEALNL----DDRY-------------------------IKAYSRRATARKELGKLKESIEDS  174 (372)
Q Consensus       138 ~~~~~Al~l----~p~~-------------------------~~a~~~lg~~~~~lg~~~~A~~~~  174 (372)
                      +.....++.    .|..                         ..++...+.++++.|+++.|.+.+
T Consensus       199 k~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaL  264 (459)
T KOG4340|consen  199 KHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEAL  264 (459)
T ss_pred             HHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHh
Confidence            877766654    2321                         345555666777777777776554

>PLN03077 Protein ECB2; Provisional

Probab=97.50  E-value=0.0016  Score=70.43  Aligned_cols=118  Identities=16%  Similarity=0.120  Sum_probs=98.2

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHhcCHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIAL--SPTAVAYANRAMAYLKLRRFQEAE  137 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~--~p~~~~~~~la~~~~~~g~~~eA~  137 (372)
                      ..|++++|...|...   . .  +...|..+...|...|+.++|+..|++..+.  .|+...|..+-.++.+.|.+++|.
T Consensus       536 k~G~~~~A~~~f~~~---~-~--d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~  609 (857)
T PLN03077        536 RCGRMNYAWNQFNSH---E-K--DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGL  609 (857)
T ss_pred             HcCCHHHHHHHHHhc---C-C--ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHH
Confidence            679999999999886   2 2  4556889999999999999999999988774  577777777777899999999999


Q ss_pred             HHHHHHHhcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCc
Q 017383          138 DDCTEALNLDD--RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN  184 (372)
Q Consensus       138 ~~~~~Al~l~p--~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~  184 (372)
                      ..|+......+  -+...|..+..++...|++++|...+++. .+.|+.
T Consensus       610 ~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd~  657 (857)
T PLN03077        610 EYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPDP  657 (857)
T ss_pred             HHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCCH
Confidence            99999885432  23578889999999999999999999885 466763

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.46  E-value=0.00019  Score=43.95  Aligned_cols=31  Identities=35%  Similarity=0.494  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 017383          152 KAYSRRATARKELGKLKESIEDSEFALRLEP  182 (372)
Q Consensus       152 ~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P  182 (372)
                      .+|+.+|.++..+|++++|+.+|+++++++|
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            3455555555555555555555555555555

...

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.41  E-value=0.0025  Score=60.70  Aligned_cols=82  Identities=20%  Similarity=0.208  Sum_probs=42.1

Q ss_pred             HhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 017383           96 KQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDS  174 (372)
Q Consensus        96 ~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~  174 (372)
                      +-+++..=+...++.+...|+ +.++..+|..+++.+.|.+|..+++.|+...|+ ...|..+|.++..+|+..+|.+.+
T Consensus       306 ~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r  384 (400)
T COG3071         306 RPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVR  384 (400)
T ss_pred             CCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHH
Confidence            344444444455555555554 555555555555555555555555555554443 233444555555555555555555


Q ss_pred             HHHH
Q 017383          175 EFAL  178 (372)
Q Consensus       175 ~~al  178 (372)
                      +.++
T Consensus       385 ~e~L  388 (400)
T COG3071         385 REAL  388 (400)
T ss_pred             HHHH
Confidence            5554

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.39  E-value=0.0011  Score=45.31  Aligned_cols=44  Identities=16%  Similarity=0.243  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHH
Q 017383          152 KAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVK  195 (372)
Q Consensus       152 ~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~  195 (372)
                      +.++.+|..++.+|+|++|..+.+.+|+++|+|.++......+.
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~   45 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIE   45 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Confidence            46788888999999999999999999999999988765544443

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.35  E-value=0.00033  Score=42.83  Aligned_cols=32  Identities=31%  Similarity=0.396  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 017383          118 VAYANRAMAYLKLRRFQEAEDDCTEALNLDDR  149 (372)
Q Consensus       118 ~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~  149 (372)
                      .+|+.+|.+|..+|++++|+.+|+++++++|+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            45677777777777777777777777777664

...

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.32  E-value=0.00081  Score=65.50  Aligned_cols=114  Identities=13%  Similarity=0.031  Sum_probs=93.8

Q ss_pred             hHHHHHHHHHHHHHhhcHHHHHHHHHHH-HccCCC---------HHHHHHHHHHHHHhcCHHHHHHHHHHHHh-------
Q 017383           83 DATSEKELGNECFKQKKFKEAIDCYSRS-IALSPT---------AVAYANRAMAYLKLRRFQEAEDDCTEALN-------  145 (372)
Q Consensus        83 ~a~~~~~~g~~~~~~g~~~~Ai~~y~~a-l~~~p~---------~~~~~~la~~~~~~g~~~eA~~~~~~Al~-------  145 (372)
                      .+.++...++.+|-.|+|..|+..+... +...|.         ...|+|+|.+++.+|.|.-+..+|.+|++       
T Consensus       239 s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~  318 (696)
T KOG2471|consen  239 SSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLR  318 (696)
T ss_pred             CcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHh
Confidence            3444667799999999999999987654 333232         34569999999999999999999999996       


Q ss_pred             --cCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHH
Q 017383          146 --LDD---------RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS  196 (372)
Q Consensus       146 --l~p---------~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~  196 (372)
                        +.|         .....+|+.|..|...|+.-.|.++|.++......|+..|-+++++-.
T Consensus       319 ~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCi  380 (696)
T KOG2471|consen  319 NGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCI  380 (696)
T ss_pred             ccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence              111         236779999999999999999999999999999999999999988754

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.31  E-value=0.00078  Score=63.24  Aligned_cols=85  Identities=21%  Similarity=0.177  Sum_probs=74.6

Q ss_pred             HHHHhhcHHHHHHHHHHHHccCCC--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 017383           93 ECFKQKKFKEAIDCYSRSIALSPT--AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKES  170 (372)
Q Consensus        93 ~~~~~g~~~~Ai~~y~~al~~~p~--~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A  170 (372)
                      .+....+|..|+..++-.+.++..  ..+-..+|.|++++|+|++|+..|+-+..-+.-+.+.+.+++.+++-+|.|.+|
T Consensus        31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA  110 (557)
T KOG3785|consen   31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEA  110 (557)
T ss_pred             HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHH
Confidence            356778999999999998877755  567778999999999999999999999998888899999999999999999999


Q ss_pred             HHHHHHH
Q 017383          171 IEDSEFA  177 (372)
Q Consensus       171 ~~~~~~a  177 (372)
                      ...-.++
T Consensus       111 ~~~~~ka  117 (557)
T KOG3785|consen  111 KSIAEKA  117 (557)
T ss_pred             HHHHhhC
Confidence            8876554

>PRK10941 hypothetical protein; Provisional

Probab=97.26  E-value=0.0029  Score=58.52  Aligned_cols=72  Identities=11%  Similarity=0.081  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHH
Q 017383          117 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK  188 (372)
Q Consensus       117 ~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~  188 (372)
                      ...+.|+=.+|...++++.|+.+.+..+.++|+++.-+--+|.+|.++|.+..|..+++..+...|+++.+.
T Consensus       181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~  252 (269)
T PRK10941        181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE  252 (269)
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence            566788899999999999999999999999999999999999999999999999999999999999998764

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=97.25  E-value=0.00036  Score=65.44  Aligned_cols=112  Identities=28%  Similarity=0.344  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHccCC---C-----------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 017383           87 EKELGNECFKQKKFKEAIDCYSRSIALSP---T-----------------AVAYANRAMAYLKLRRFQEAEDDCTEALNL  146 (372)
Q Consensus        87 ~~~~g~~~~~~g~~~~Ai~~y~~al~~~p---~-----------------~~~~~~la~~~~~~g~~~eA~~~~~~Al~l  146 (372)
                      .++.|+..++.++|..|..-|.+++..-.   .                 ...+.+++.|-++++.+..|+..+..+++.
T Consensus       225 ~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~  304 (372)
T KOG0546|consen  225 KKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRD  304 (372)
T ss_pred             hhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccccccc
Confidence            45678889999999999999998876311   0                 356778999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHH
Q 017383          147 DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLY  198 (372)
Q Consensus       147 ~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~~  198 (372)
                      +++..++++++|.++..+.++++|+.++..+....|++..+...+..+....
T Consensus       305 ~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~  356 (372)
T KOG0546|consen  305 ERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKK  356 (372)
T ss_pred             ChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHH
Confidence            9999999999999999999999999999999999999988877666655433

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.25  E-value=0.003  Score=65.61  Aligned_cols=124  Identities=14%  Similarity=0.005  Sum_probs=103.0

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~  138 (372)
                      +.+++.+|+....+.++..|+...+.+  ..|..++++|++++|..|++..-...++ ...+-.+-.||..+|++++|..
T Consensus        21 d~~qfkkal~~~~kllkk~Pn~~~a~v--LkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~   98 (932)
T KOG2053|consen   21 DSSQFKKALAKLGKLLKKHPNALYAKV--LKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH   98 (932)
T ss_pred             hhHHHHHHHHHHHHHHHHCCCcHHHHH--HHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence            668999999999999999999877777  5588999999999999887776655565 7777888999999999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHH
Q 017383          139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE  186 (372)
Q Consensus       139 ~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~  186 (372)
                      +|++++..+|+ -..++.+=.+|.+-+.|.+=...--+..+..|.++-
T Consensus        99 ~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~y  145 (932)
T KOG2053|consen   99 LYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAY  145 (932)
T ss_pred             HHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccc
Confidence            99999999999 777777777888888877655555555566676653

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.25  E-value=0.0063  Score=55.20  Aligned_cols=131  Identities=15%  Similarity=0.069  Sum_probs=100.2

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHh----cCHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKL----RRFQE  135 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~~la~~~~~~----g~~~e  135 (372)
                      ..|++++|+........+     ++.+  .--.++.+..+++-|.....+..+++.+ ..+..+|.+|.++    +.+.+
T Consensus       120 ~~~~~deAl~~~~~~~~l-----E~~A--l~VqI~lk~~r~d~A~~~lk~mq~ided-~tLtQLA~awv~la~ggek~qd  191 (299)
T KOG3081|consen  120 HDGDFDEALKALHLGENL-----EAAA--LNVQILLKMHRFDLAEKELKKMQQIDED-ATLTQLAQAWVKLATGGEKIQD  191 (299)
T ss_pred             cCCChHHHHHHHhccchH-----HHHH--HHHHHHHHHHHHHHHHHHHHHHHccchH-HHHHHHHHHHHHHhccchhhhh
Confidence            567888888877763332     3444  3356788889999999999998888765 2233344444333    46889


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHH
Q 017383          136 AEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLY  198 (372)
Q Consensus       136 A~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~~  198 (372)
                      |.-.|+..-...|..+......+.++..+|+|++|...++.+|..++++++...++--+....
T Consensus       192 AfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~  254 (299)
T KOG3081|consen  192 AFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHL  254 (299)
T ss_pred             HHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHh
Confidence            999999998888888999999999999999999999999999999999999876665544333

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.23  E-value=0.027  Score=55.12  Aligned_cols=122  Identities=11%  Similarity=0.031  Sum_probs=85.5

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~  138 (372)
                      .++++..|.+.|++||..+-.+...  |...+.+-++.+....|...+++|+.+-|. -..|+..-..--.+|+...|..
T Consensus        85 sq~e~~RARSv~ERALdvd~r~itL--WlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRq  162 (677)
T KOG1915|consen   85 SQKEIQRARSVFERALDVDYRNITL--WLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQ  162 (677)
T ss_pred             hHHHHHHHHHHHHHHHhcccccchH--HHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHH
Confidence            4567778888888888888554333  556777778888888888888888888888 6777777777777888888888


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCc
Q 017383          139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN  184 (372)
Q Consensus       139 ~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~  184 (372)
                      .|++-+...|+- .+|...-.--..-...+.|...|++-+-..|+-
T Consensus       163 iferW~~w~P~e-qaW~sfI~fElRykeieraR~IYerfV~~HP~v  207 (677)
T KOG1915|consen  163 IFERWMEWEPDE-QAWLSFIKFELRYKEIERARSIYERFVLVHPKV  207 (677)
T ss_pred             HHHHHHcCCCcH-HHHHHHHHHHHHhhHHHHHHHHHHHHheecccH
Confidence            888888887763 444444444444455556666666655555543

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.23  E-value=0.00037  Score=67.78  Aligned_cols=105  Identities=13%  Similarity=0.103  Sum_probs=85.4

Q ss_pred             CCCCCchhhHHHHHhh-hh------cCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHc---------cCCC------
Q 017383           59 NSYSRNYDPVSHISSS-LM------NEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIA---------LSPT------  116 (372)
Q Consensus        59 y~~g~~~~A~~~~~~a-l~------~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~---------~~p~------  116 (372)
                      |..|+|..|...+... +.      +.|.......++++|-+++..|.|.-++.+|.+||.         +.|.      
T Consensus       251 Y~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls  330 (696)
T KOG2471|consen  251 YAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLS  330 (696)
T ss_pred             HHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehh
Confidence            5778888888876543 22      223333455678999999999999999999999995         1221      


Q ss_pred             ----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 017383          117 ----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKE  163 (372)
Q Consensus       117 ----~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~  163 (372)
                          ..+++|.|..|+..|+.-.|.++|.++....-.++..|.+++.+...
T Consensus       331 ~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim  381 (696)
T KOG2471|consen  331 QNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM  381 (696)
T ss_pred             cccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence                57899999999999999999999999999999999999999987653

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.18  E-value=0.0031  Score=57.09  Aligned_cols=92  Identities=16%  Similarity=0.139  Sum_probs=79.1

Q ss_pred             CCCCCchhhHHHHHhhhh----cCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCH
Q 017383           59 NSYSRNYDPVSHISSSLM----NEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRF  133 (372)
Q Consensus        59 y~~g~~~~A~~~~~~al~----~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~  133 (372)
                      ...||.+.|..+++.+-+    ++.......++.+.+.+|...++|..|...|++++..||. +.+-++.|.|++.+|+.
T Consensus       223 MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l  302 (366)
T KOG2796|consen  223 MQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKL  302 (366)
T ss_pred             HhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHH
Confidence            367899999999985443    3333334456788899999999999999999999999998 89999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCC
Q 017383          134 QEAEDDCTEALNLDDRY  150 (372)
Q Consensus       134 ~eA~~~~~~Al~l~p~~  150 (372)
                      .+|++..+.++...|..
T Consensus       303 ~DAiK~~e~~~~~~P~~  319 (366)
T KOG2796|consen  303 KDALKQLEAMVQQDPRH  319 (366)
T ss_pred             HHHHHHHHHHhccCCcc
Confidence            99999999999999975

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.18  E-value=0.021  Score=54.50  Aligned_cols=122  Identities=11%  Similarity=0.006  Sum_probs=104.5

Q ss_pred             CCCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC--HHHHHHHHHHHHHhcCHHHH
Q 017383           59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT--AVAYANRAMAYLKLRRFQEA  136 (372)
Q Consensus        59 y~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~--~~~~~~la~~~~~~g~~~eA  136 (372)
                      +.-|+|.+|.....+.-+-.+.  -...+..-+...-..|+++.|-.+..++-+..++  ...+..++...+..|++..|
T Consensus        95 l~eG~~~qAEkl~~rnae~~e~--p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA  172 (400)
T COG3071          95 LFEGDFQQAEKLLRRNAEHGEQ--PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAA  172 (400)
T ss_pred             HhcCcHHHHHHHHHHhhhcCcc--hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhH
Confidence            4679999999999997776654  3333455567778899999999999999999544  77788899999999999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 017383          137 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEP  182 (372)
Q Consensus       137 ~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P  182 (372)
                      ..-...++...|.++.++...-.+|...|++.+....+.+.-+-.-
T Consensus       173 ~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~  218 (400)
T COG3071         173 RENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGL  218 (400)
T ss_pred             HHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccC
Confidence            9999999999999999999999999999999999998888776554

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.16  E-value=0.012  Score=51.13  Aligned_cols=97  Identities=15%  Similarity=0.111  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHHHccCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC-HHHHHHHHHH
Q 017383           86 SEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY-IKAYSRRATA  160 (372)
Q Consensus        86 ~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~-~~a~~~lg~~  160 (372)
                      ....++..+...|++++|+..++.++..-.+    ..+-.++|.+.+.+|.+++|+..+.....  +.+ +.....+|.+
T Consensus        91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrGDi  168 (207)
T COG2976          91 AALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRGDI  168 (207)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhhhH
Confidence            4567888999999999999999999976544    66678899999999999999988776432  222 2335678999


Q ss_pred             HHHcCCHHHHHHHHHHHHccCCCc
Q 017383          161 RKELGKLKESIEDSEFALRLEPQN  184 (372)
Q Consensus       161 ~~~lg~~~~A~~~~~~al~l~P~~  184 (372)
                      +...|+-++|...|++++...++.
T Consensus       169 ll~kg~k~~Ar~ay~kAl~~~~s~  192 (207)
T COG2976         169 LLAKGDKQEARAAYEKALESDASP  192 (207)
T ss_pred             HHHcCchHHHHHHHHHHHHccCCh
Confidence            999999999999999999998554

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.11  E-value=0.014  Score=54.53  Aligned_cols=100  Identities=10%  Similarity=-0.040  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHH-hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 017383           86 SEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLK-LRRFQEAEDDCTEALNLDDRYIKAYSRRATARKE  163 (372)
Q Consensus        86 ~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~-~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~  163 (372)
                      +|..+.+...+.+..+.|...|.+|++..+. ..+|...|..-+. .++.+.|...|+.+++..|.+...|.....-+..
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~   82 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK   82 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            3556777888888899999999999965544 7888888888666 4566669999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHccCCCcH
Q 017383          164 LGKLKESIEDSEFALRLEPQNQ  185 (372)
Q Consensus       164 lg~~~~A~~~~~~al~l~P~~~  185 (372)
                      +|+.+.|...|++++..-|...
T Consensus        83 ~~d~~~aR~lfer~i~~l~~~~  104 (280)
T PF05843_consen   83 LNDINNARALFERAISSLPKEK  104 (280)
T ss_dssp             TT-HHHHHHHHHHHCCTSSCHH
T ss_pred             hCcHHHHHHHHHHHHHhcCchh
Confidence            9999999999999999888765

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.07  E-value=0.014  Score=53.95  Aligned_cols=136  Identities=15%  Similarity=0.073  Sum_probs=82.1

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCCHHHHHH-HH--HHHHHhcCHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYAN-RA--MAYLKLRRFQEA  136 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~~-la--~~~~~~g~~~eA  136 (372)
                      ..|++.+|...+..++...|.+.++..  .++.+|...|+.+.|...+...=..... ..+.. .+  ..+.+.....+ 
T Consensus       146 ~~e~~~~a~~~~~~al~~~~~~~~~~~--~la~~~l~~g~~e~A~~iL~~lP~~~~~-~~~~~l~a~i~ll~qaa~~~~-  221 (304)
T COG3118         146 EAEDFGEAAPLLKQALQAAPENSEAKL--LLAECLLAAGDVEAAQAILAALPLQAQD-KAAHGLQAQIELLEQAAATPE-  221 (304)
T ss_pred             hccchhhHHHHHHHHHHhCcccchHHH--HHHHHHHHcCChHHHHHHHHhCcccchh-hHHHHHHHHHHHHHHHhcCCC-
Confidence            445666666666666666666544433  5566666666666665554442111111 11111 11  11111111111 


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC--cHHHHHHHHHHHHHHH
Q 017383          137 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQ--NQEIKKQLAEVKSLYE  199 (372)
Q Consensus       137 ~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~--~~~~~~~l~~a~~~~~  199 (372)
                      ...+++.+..+|++..+-+.+|..+...|++++|.+.+-..++.+-+  +..++..+-++...++
T Consensus       222 ~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g  286 (304)
T COG3118         222 IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG  286 (304)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence            13455566778999999999999999999999999999999887654  4566777766666554

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=97.04  E-value=0.0052  Score=59.00  Aligned_cols=92  Identities=20%  Similarity=0.347  Sum_probs=77.9

Q ss_pred             HHHHHHHHHhhcHHHHHHHHHHHHccCCC-------------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 017383           88 KELGNECFKQKKFKEAIDCYSRSIALSPT-------------------AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD  148 (372)
Q Consensus        88 ~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-------------------~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p  148 (372)
                      ..-|..+|++|+|..|+.-|.-+|++...                   ..+...+..||+++++.+-|+....+.|.++|
T Consensus       180 L~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP  259 (569)
T PF15015_consen  180 LKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNP  259 (569)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCc
Confidence            34567788999999999999888886322                   23456789999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 017383          149 RYIKAYSRRATARKELGKLKESIEDSEFALR  179 (372)
Q Consensus       149 ~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~  179 (372)
                      .+...+.+.|.+...+.+|.+|...+--+.-
T Consensus       260 ~~frnHLrqAavfR~LeRy~eAarSamia~y  290 (569)
T PF15015_consen  260 SYFRNHLRQAAVFRRLERYSEAARSAMIADY  290 (569)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999887765543

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.96  E-value=0.004  Score=64.06  Aligned_cols=114  Identities=29%  Similarity=0.450  Sum_probs=100.8

Q ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-----HHHHHHHHHHHHHh--cCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 017383           85 TSEKELGNECFKQKKFKEAIDCYSRSIALSPT-----AVAYANRAMAYLKL--RRFQEAEDDCTEALNLDDRYIKAYSRR  157 (372)
Q Consensus        85 ~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-----~~~~~~la~~~~~~--g~~~eA~~~~~~Al~l~p~~~~a~~~l  157 (372)
                      ......|+.++..++|.+|.--|..++.+-|.     +....+.+.||+.+  |+|..++..|+-|+...|....++..+
T Consensus        54 ~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r  133 (748)
T KOG4151|consen   54 LELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKR  133 (748)
T ss_pred             HHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhh
Confidence            34567899999999999999999999999885     56677888877755  599999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHH
Q 017383          158 ATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLY  198 (372)
Q Consensus       158 g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~~  198 (372)
                      +.+|..+++++-|+.+..-...+.|.+..+...+.+.+..|
T Consensus       134 ~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll  174 (748)
T KOG4151|consen  134 ARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLL  174 (748)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Confidence            99999999999999999999999999988877777777766

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.79  E-value=0.0026  Score=38.29  Aligned_cols=29  Identities=21%  Similarity=0.189  Sum_probs=12.1

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 017383          120 YANRAMAYLKLRRFQEAEDDCTEALNLDD  148 (372)
Q Consensus       120 ~~~la~~~~~~g~~~eA~~~~~~Al~l~p  148 (372)
                      ++++|.|+..+|++++|+..|++.+...|
T Consensus         3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P   31 (33)
T PF13174_consen    3 LYRLARCYYKLGDYDEAIEYFQRLIKRYP   31 (33)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence            33444444444444444444444444333

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=96.78  E-value=0.034  Score=60.68  Aligned_cols=141  Identities=15%  Similarity=0.026  Sum_probs=113.9

Q ss_pred             CCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHH
Q 017383           62 SRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDC  140 (372)
Q Consensus        62 g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~  140 (372)
                      |.-+.-...|++|.+.+.   -...|..+..+|.+-+++++|.+.|+.-++..-+ ...|...|..++..++-+.|...+
T Consensus      1511 G~eesl~kVFeRAcqycd---~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL 1587 (1710)
T KOG1070|consen 1511 GTEESLKKVFERACQYCD---AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELL 1587 (1710)
T ss_pred             CcHHHHHHHHHHHHHhcc---hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHH
Confidence            444455667777777662   1234667888999999999999999999988776 889999999999999999999999


Q ss_pred             HHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHH----------HHHHHHHHHHHHhh
Q 017383          141 TEALNLDDR--YIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQL----------AEVKSLYEKEVFQK  205 (372)
Q Consensus       141 ~~Al~l~p~--~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l----------~~a~~~~~~~~~~~  205 (372)
                      .+|+.--|.  +.....-.+.+-+..|+-+.+...|+-.+.-.|.-.+.|.-|          ..++.+|++.+..+
T Consensus      1588 ~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1588 KRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred             HHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence            999999888  788888899999999999999999999999999887776433          34455666655543

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=96.75  E-value=0.024  Score=49.20  Aligned_cols=97  Identities=16%  Similarity=0.078  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--CCHH----HH
Q 017383           85 TSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD--RYIK----AY  154 (372)
Q Consensus        85 ~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p--~~~~----a~  154 (372)
                      .++..+|..|.+.|+++.|+++|.++.+....    .+.+.++-.+.+..++|..+..+..+|-.+-.  .+..    ..
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk  116 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK  116 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            34779999999999999999999999887644    78889999999999999999999999877632  2322    23


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHccC
Q 017383          155 SRRATARKELGKLKESIEDSEFALRLE  181 (372)
Q Consensus       155 ~~lg~~~~~lg~~~~A~~~~~~al~l~  181 (372)
                      ...|..+...|+|.+|...|-.++.-.
T Consensus       117 ~~~gL~~l~~r~f~~AA~~fl~~~~t~  143 (177)
T PF10602_consen  117 VYEGLANLAQRDFKEAAELFLDSLSTF  143 (177)
T ss_pred             HHHHHHHHHhchHHHHHHHHHccCcCC
Confidence            446788888999999999987665433

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.75  E-value=0.035  Score=51.87  Aligned_cols=121  Identities=13%  Similarity=0.070  Sum_probs=94.6

Q ss_pred             chhhHHHHHhhhhcCCCCchHHHHHHHHHHHHH-hhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHH
Q 017383           64 NYDPVSHISSSLMNEESTPDATSEKELGNECFK-QKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCT  141 (372)
Q Consensus        64 ~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~-~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~  141 (372)
                      .+.|...|.++++......+  .|...|..-+. .++.+.|...|+.+++..|. ...|.....-+..+|+.+.|...|+
T Consensus        17 ~~~aR~vF~~a~~~~~~~~~--vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfe   94 (280)
T PF05843_consen   17 IEAARKVFKRARKDKRCTYH--VYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFE   94 (280)
T ss_dssp             HHHHHHHHHHHHCCCCS-TH--HHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             hHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence            56788899999865543333  45577877556 67777799999999999998 7888888888899999999999999


Q ss_pred             HHHhcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHH
Q 017383          142 EALNLDDRYI---KAYSRRATARKELGKLKESIEDSEFALRLEPQNQE  186 (372)
Q Consensus       142 ~Al~l~p~~~---~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~  186 (372)
                      +++..-+...   ..|......-...|+++......+++..+.|.+..
T Consensus        95 r~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~  142 (280)
T PF05843_consen   95 RAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS  142 (280)
T ss_dssp             HHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred             HHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence            9999866654   56777778888889999999999999988887443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.75  E-value=0.0082  Score=40.98  Aligned_cols=42  Identities=19%  Similarity=0.230  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 017383          118 VAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRAT  159 (372)
Q Consensus       118 ~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~  159 (372)
                      +.++.+|..++++|+|.+|..+++.+|+++|++..+......
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~   43 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKEL   43 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence            356778888899999999999999999999998777655443

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.74  E-value=0.015  Score=57.24  Aligned_cols=116  Identities=17%  Similarity=0.044  Sum_probs=81.6

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHcc-------CC-----------------
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIAL-------SP-----------------  115 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~-------~p-----------------  115 (372)
                      ...+...-+....+||+++|+..+++.  .++..  ...-..+|..+|+++++.       +.                 
T Consensus       180 RERnp~aRIkaA~eALei~pdCAdAYI--LLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt  255 (539)
T PF04184_consen  180 RERNPQARIKAAKEALEINPDCADAYI--LLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDT  255 (539)
T ss_pred             hcCCHHHHHHHHHHHHHhhhhhhHHHh--hcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhcccc
Confidence            345666677888889999988666644  44431  112234444444444432       11                 


Q ss_pred             C--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 017383          116 T--AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR--YIKAYSRRATARKELGKLKESIEDSEFALR  179 (372)
Q Consensus       116 ~--~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~--~~~a~~~lg~~~~~lg~~~~A~~~~~~al~  179 (372)
                      +  ..+-..+|+|..++|+.++|++.+...++.+|.  +...+.++-.++..++.|.++...+.+.-.
T Consensus       256 ~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD  323 (539)
T PF04184_consen  256 NVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD  323 (539)
T ss_pred             chhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence            0  234467899999999999999999999988775  467889999999999999999888887543

The molecular function of this protein is uncertain.

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.73  E-value=0.0027  Score=39.56  Aligned_cols=22  Identities=14%  Similarity=0.187  Sum_probs=9.3

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHH
Q 017383          121 ANRAMAYLKLRRFQEAEDDCTE  142 (372)
Q Consensus       121 ~~la~~~~~~g~~~eA~~~~~~  142 (372)
                      .++|.+|..+|+|++|+.+|++
T Consensus         3 ~~Lg~~~~~~g~~~~Ai~~y~~   24 (36)
T PF13176_consen    3 NNLGRIYRQQGDYEKAIEYYEQ   24 (36)
T ss_dssp             HHHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHH
Confidence            3444444444444444444444

>smart00028 TPR Tetratricopeptide repeats

Probab=96.73  E-value=0.0028  Score=36.82  Aligned_cols=29  Identities=41%  Similarity=0.493  Sum_probs=13.0

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 017383          120 YANRAMAYLKLRRFQEAEDDCTEALNLDD  148 (372)
Q Consensus       120 ~~~la~~~~~~g~~~eA~~~~~~Al~l~p  148 (372)
                      +.++|.++..+|++++|+.++++++.++|
T Consensus         4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        4 LYNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            34444444444444444444444444443

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.72  E-value=0.045  Score=54.00  Aligned_cols=104  Identities=14%  Similarity=0.167  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CCCCHHHHHHHHH
Q 017383           84 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT---AVAYANRAMAYLKLRRFQEAEDDCTEALNL-DDRYIKAYSRRAT  159 (372)
Q Consensus        84 a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~---~~~~~~la~~~~~~g~~~eA~~~~~~Al~l-~p~~~~a~~~lg~  159 (372)
                      .++-..+|+++.+.|+.++|++.|...++.+|.   ..++.|+-.|++.++.|.++...+.+-=.+ -|..+...|..+.
T Consensus       259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL  338 (539)
T PF04184_consen  259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL  338 (539)
T ss_pred             hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence            344568999999999999999999999998876   778999999999999999998888875322 2455666666555


Q ss_pred             HHHH-cCC---------------HHHHHHHHHHHHccCCCcHHH
Q 017383          160 ARKE-LGK---------------LKESIEDSEFALRLEPQNQEI  187 (372)
Q Consensus       160 ~~~~-lg~---------------~~~A~~~~~~al~l~P~~~~~  187 (372)
                      +..+ .|+               -..|++.+.+|++.+|+.+..
T Consensus       339 LkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y  382 (539)
T PF04184_consen  339 LKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY  382 (539)
T ss_pred             HHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence            4322 121               235778999999999998765

The molecular function of this protein is uncertain.

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.71  E-value=0.0026  Score=38.25  Aligned_cols=33  Identities=27%  Similarity=0.295  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCc
Q 017383          152 KAYSRRATARKELGKLKESIEDSEFALRLEPQN  184 (372)
Q Consensus       152 ~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~  184 (372)
                      .+++++|.++..+|++++|+..|++++...|++
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            478999999999999999999999999999974

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=96.71  E-value=0.039  Score=45.03  Aligned_cols=79  Identities=18%  Similarity=0.107  Sum_probs=63.7

Q ss_pred             CCCHHHHHHHHHHHHHhcC---HHHHHHHHHHHHh-cCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHH
Q 017383          114 SPTAVAYANRAMAYLKLRR---FQEAEDDCTEALN-LDDR-YIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK  188 (372)
Q Consensus       114 ~p~~~~~~~la~~~~~~g~---~~eA~~~~~~Al~-l~p~-~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~  188 (372)
                      ++.....+++|.++.+..+   ..+.+..++..+. -.|. .-+..|.++..++.+|+|+.|+.+.+..|+.+|+|.++.
T Consensus        29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~  108 (149)
T KOG3364|consen   29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL  108 (149)
T ss_pred             cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence            4557778889998887764   5568888888886 4443 367788999999999999999999999999999999886


Q ss_pred             HHHH
Q 017383          189 KQLA  192 (372)
Q Consensus       189 ~~l~  192 (372)
                      ..-.
T Consensus       109 ~Lk~  112 (149)
T KOG3364|consen  109 ELKE  112 (149)
T ss_pred             HHHH
Confidence            4433

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.70  E-value=0.018  Score=47.85  Aligned_cols=60  Identities=22%  Similarity=0.203  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 017383           86 SEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALN  145 (372)
Q Consensus        86 ~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~  145 (372)
                      ++..++..+...|++++|+..+.+++..+|. ..+|..+-.+|..+|++.+|+..|++...
T Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            4567788889999999999999999999998 88999999999999999999999988754

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=96.70  E-value=0.05  Score=52.06  Aligned_cols=122  Identities=20%  Similarity=0.125  Sum_probs=96.3

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHcc---CCC------HHHHHHHHHHHHHh
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIAL---SPT------AVAYANRAMAYLKL  130 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~---~p~------~~~~~~la~~~~~~  130 (372)
                      ..|+++.|..+...+-...|..+.+  ....=......|+|+.|+...+...+.   .++      +.++...++..+..
T Consensus       166 r~GareaAr~yAe~Aa~~Ap~l~WA--~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda  243 (531)
T COG3898         166 RLGAREAARHYAERAAEKAPQLPWA--ARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA  243 (531)
T ss_pred             hcccHHHHHHHHHHHHhhccCCchH--HHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC
Confidence            5688888888888888888885555  334444567889999999988776653   233      44455555555443


Q ss_pred             cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCc
Q 017383          131 RRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN  184 (372)
Q Consensus       131 g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~  184 (372)
                       +...|..+...+++|.|+...+-..-+.+++..|+..++-..++.+.+.+|+-
T Consensus       244 -dp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP  296 (531)
T COG3898         244 -DPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP  296 (531)
T ss_pred             -ChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh
Confidence             48889999999999999999999999999999999999999999999999963

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.68  E-value=0.016  Score=51.67  Aligned_cols=93  Identities=20%  Similarity=0.235  Sum_probs=64.0

Q ss_pred             HHHhhcHHHHHHHHHHHHccCCC-------HHHHHHHHHHHHHh-cCHHHHHHHHHHHHhcCCCC------HHHHHHHHH
Q 017383           94 CFKQKKFKEAIDCYSRSIALSPT-------AVAYANRAMAYLKL-RRFQEAEDDCTEALNLDDRY------IKAYSRRAT  159 (372)
Q Consensus        94 ~~~~g~~~~Ai~~y~~al~~~p~-------~~~~~~la~~~~~~-g~~~eA~~~~~~Al~l~p~~------~~a~~~lg~  159 (372)
                      +|+.++.++|+.|+++++++..+       +.-+..+|..|-.- .++++|+.+|++|-......      -+++...+.
T Consensus        83 cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~  162 (288)
T KOG1586|consen   83 CYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQ  162 (288)
T ss_pred             HhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHH
Confidence            44555788888888888887654       34455677777644 77888888888887654322      344555666


Q ss_pred             HHHHcCCHHHHHHHHHHHHccCCCcHH
Q 017383          160 ARKELGKLKESIEDSEFALRLEPQNQE  186 (372)
Q Consensus       160 ~~~~lg~~~~A~~~~~~al~l~P~~~~  186 (372)
                      .-..+|+|.+|+..|+++....-+|.-
T Consensus       163 yaa~leqY~~Ai~iyeqva~~s~~n~L  189 (288)
T KOG1586|consen  163 YAAQLEQYSKAIDIYEQVARSSLDNNL  189 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccchH
Confidence            667788888888888888776655543

>PRK10941 hypothetical protein; Provisional

Probab=96.68  E-value=0.018  Score=53.29  Aligned_cols=74  Identities=15%  Similarity=0.107  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 017383           86 SEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRAT  159 (372)
Q Consensus        86 ~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~  159 (372)
                      .+.++-.+|...++|+.|+.|.+..+.++|+ +.-+..||.+|.++|.+..|..+++..++..|+++.+-.-...
T Consensus       183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~q  257 (269)
T PRK10941        183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQ  257 (269)
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence            4567778899999999999999999999999 8889999999999999999999999999999999887655444

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.67  E-value=0.0058  Score=56.49  Aligned_cols=100  Identities=16%  Similarity=0.155  Sum_probs=76.2

Q ss_pred             hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 017383           83 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATAR  161 (372)
Q Consensus        83 ~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~  161 (372)
                      ++......+.-..+.|+.++|...|+.|+.++|. +.++..+|.....-++.-+|-.+|.+|+.++|.+.+++.+++...
T Consensus       115 EA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~  194 (472)
T KOG3824|consen  115 EAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTT  194 (472)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccc
Confidence            4444455666778899999999999999999998 999999999888889999999999999999999999998877533


Q ss_pred             H----HcCCHHHHHHHHHHHHccCC
Q 017383          162 K----ELGKLKESIEDSEFALRLEP  182 (372)
Q Consensus       162 ~----~lg~~~~A~~~~~~al~l~P  182 (372)
                      -    -..++-+.+......+..-+
T Consensus       195 plV~~iD~r~l~svdskrd~~~~i~  219 (472)
T KOG3824|consen  195 PLVSAIDRRMLRSVDSKRDEFNHIQ  219 (472)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            2    22233344444444444333

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=96.67  E-value=0.044  Score=57.32  Aligned_cols=90  Identities=20%  Similarity=0.198  Sum_probs=82.8

Q ss_pred             HHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 017383           94 CFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIE  172 (372)
Q Consensus        94 ~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~  172 (372)
                      ....++|.+|+....+.++..|+ ..+..--|.+++++|++++|..+++..-.+.+++...+-.+-.+|..+|++++|..
T Consensus        19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~   98 (932)
T KOG2053|consen   19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH   98 (932)
T ss_pred             HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence            35678999999999999999999 77778889999999999999977777777788888899999999999999999999


Q ss_pred             HHHHHHccCCC
Q 017383          173 DSEFALRLEPQ  183 (372)
Q Consensus       173 ~~~~al~l~P~  183 (372)
                      .|++++..+|+
T Consensus        99 ~Ye~~~~~~P~  109 (932)
T KOG2053|consen   99 LYERANQKYPS  109 (932)
T ss_pred             HHHHHHhhCCc
Confidence            99999999999

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.63  E-value=0.078  Score=51.19  Aligned_cols=128  Identities=16%  Similarity=0.198  Sum_probs=87.6

Q ss_pred             CCCchhhHHHHHhhhhcC-CCCchHHHHHHHHHHHHH---------hhcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHh
Q 017383           61 YSRNYDPVSHISSSLMNE-ESTPDATSEKELGNECFK---------QKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKL  130 (372)
Q Consensus        61 ~g~~~~A~~~~~~al~~~-p~~~~a~~~~~~g~~~~~---------~g~~~~Ai~~y~~al~~~p~~~~~~~la~~~~~~  130 (372)
                      .|+.++|+..+..++... +.  .+..+...|.+|-.         ....++|+.+|.++.+++|+...=.|++.++...
T Consensus       195 ~gdre~Al~il~~~l~~~~~~--~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~  272 (374)
T PF13281_consen  195 PGDREKALQILLPVLESDENP--DPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLA  272 (374)
T ss_pred             CCCHHHHHHHHHHHHhccCCC--ChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHc
Confidence            589999999999966544 33  33445566766642         3357899999999999998855556777777777


Q ss_pred             cCHHHHHHHHHH-HHhc-----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHH
Q 017383          131 RRFQEAEDDCTE-ALNL-----------DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQ  190 (372)
Q Consensus       131 g~~~eA~~~~~~-Al~l-----------~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~  190 (372)
                      |.-.+....+.+ .+.+           .-.+.-.+..++.+....|++++|...+++++++.|...+...-
T Consensus       273 g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~St  344 (374)
T PF13281_consen  273 GHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELEST  344 (374)
T ss_pred             CCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHHHH
Confidence            753333222221 1111           12233445567778889999999999999999999987765433

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=96.55  E-value=0.029  Score=44.29  Aligned_cols=89  Identities=11%  Similarity=0.144  Sum_probs=46.4

Q ss_pred             HHHHHhhcHHHHHHHHHHHHccCCC----HHHHHHHHHHHHHhcC-----------HHHHHHHHHHHHhcCCCCHHHHHH
Q 017383           92 NECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRR-----------FQEAEDDCTEALNLDDRYIKAYSR  156 (372)
Q Consensus        92 ~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~~la~~~~~~g~-----------~~eA~~~~~~Al~l~p~~~~a~~~  156 (372)
                      ..++..|++-+|++..+..+...++    +..+..-|.++..+..           .-.|+++|.++..+.|..+..++.
T Consensus         4 ~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~   83 (111)
T PF04781_consen    4 KDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLFE   83 (111)
T ss_pred             HHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHHH
Confidence            3444555555555555555544433    1223333444433321           234566666666666666666666


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHcc
Q 017383          157 RATARKELGKLKESIEDSEFALRL  180 (372)
Q Consensus       157 lg~~~~~lg~~~~A~~~~~~al~l  180 (372)
                      +|.-+.....|++++.-.+++|.+
T Consensus        84 la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   84 LASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHhcc
Confidence            666555555566666666555543

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=96.52  E-value=0.043  Score=49.12  Aligned_cols=92  Identities=17%  Similarity=0.147  Sum_probs=67.6

Q ss_pred             HHHhhcHHHHHHHHHHHHcc------CCC--HHHHHHHHHHHHHhcCHHH-------HHHHHHHHHhcCC------CCHH
Q 017383           94 CFKQKKFKEAIDCYSRSIAL------SPT--AVAYANRAMAYLKLRRFQE-------AEDDCTEALNLDD------RYIK  152 (372)
Q Consensus        94 ~~~~g~~~~Ai~~y~~al~~------~p~--~~~~~~la~~~~~~g~~~e-------A~~~~~~Al~l~p------~~~~  152 (372)
                      +-....+++|++.|.-|+-.      .+.  +.++..+|.+|..+|+.+.       |+..|.+|+....      +...
T Consensus        87 ~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~  166 (214)
T PF09986_consen   87 FSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEAT  166 (214)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHH
Confidence            34456778888887777653      222  7788889999999998544       5555555555432      2267


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcH
Q 017383          153 AYSRRATARKELGKLKESIEDSEFALRLEPQNQ  185 (372)
Q Consensus       153 a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~  185 (372)
                      ..+.+|.+...+|++++|..+|.+++...-.+.
T Consensus       167 l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~  199 (214)
T PF09986_consen  167 LLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK  199 (214)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence            788999999999999999999999998765444

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=96.52  E-value=0.017  Score=57.72  Aligned_cols=105  Identities=16%  Similarity=0.168  Sum_probs=92.1

Q ss_pred             hHHHHHHHHHHHH-HhhcHHHHHHHHHHHHccCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 017383           83 DATSEKELGNECF-KQKKFKEAIDCYSRSIALSPT---AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRA  158 (372)
Q Consensus        83 ~a~~~~~~g~~~~-~~g~~~~Ai~~y~~al~~~p~---~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg  158 (372)
                      ..+.+..++..|+ ..|+..+|+.||..++...|.   -.++..+|.++.++|...+|--.+..|+.-.|.....++.+|
T Consensus       211 ~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~  290 (886)
T KOG4507|consen  211 SSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTLG  290 (886)
T ss_pred             hhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCccccccceeHH
Confidence            3445566666665 579999999999999998876   677899999999999999999999999998888888899999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHccCCCcHHH
Q 017383          159 TARKELGKLKESIEDSEFALRLEPQNQEI  187 (372)
Q Consensus       159 ~~~~~lg~~~~A~~~~~~al~l~P~~~~~  187 (372)
                      .++..+|.+.....+|..+.+.+|.....
T Consensus       291 ~i~aml~~~N~S~~~ydha~k~~p~f~q~  319 (886)
T KOG4507|consen  291 NIYAMLGEYNHSVLCYDHALQARPGFEQA  319 (886)
T ss_pred             HHHHHHhhhhhhhhhhhhhhccCcchhHH
Confidence            99999999999999999999999987554

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.52  E-value=0.011  Score=54.70  Aligned_cols=70  Identities=19%  Similarity=0.049  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHH
Q 017383          119 AYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK  188 (372)
Q Consensus       119 ~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~  188 (372)
                      +-.+.|.-..+.|+.++|...|+.|+.++|+++.++...|......++.-+|-.+|-+||.+.|.|.++.
T Consensus       118 ~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseAL  187 (472)
T KOG3824|consen  118 LALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEAL  187 (472)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHH
Confidence            3345566677889999999999999999999999999999999999999999999999999999999885

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.50  E-value=0.0044  Score=38.56  Aligned_cols=29  Identities=28%  Similarity=0.303  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 017383          153 AYSRRATARKELGKLKESIEDSEFALRLE  181 (372)
Q Consensus       153 a~~~lg~~~~~lg~~~~A~~~~~~al~l~  181 (372)
                      +|.++|.+|..+|++++|+.+|+++|.+.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~   29 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALA   29 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            57899999999999999999999966543

>smart00028 TPR Tetratricopeptide repeats

Probab=96.49  E-value=0.0044  Score=35.94  Aligned_cols=33  Identities=36%  Similarity=0.449  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCc
Q 017383          152 KAYSRRATARKELGKLKESIEDSEFALRLEPQN  184 (372)
Q Consensus       152 ~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~  184 (372)
                      .+++++|.++..+|+++.|..+|++++++.|++
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN   34 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence            578899999999999999999999999998863

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.46  E-value=0.033  Score=56.24  Aligned_cols=96  Identities=19%  Similarity=0.097  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 017383           86 SEKELGNECFKQKKFKEAIDCYSRSIALSPT-------AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRA  158 (372)
Q Consensus        86 ~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-------~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg  158 (372)
                      .+.+-|.-+|+..+|..++++|...+...|.       +....+++.||+++.+.+.|.++++.|-+.+|.++-.....-
T Consensus       356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~  435 (872)
T KOG4814|consen  356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML  435 (872)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence            3567788899999999999999999987665       778899999999999999999999999999999988877777


Q ss_pred             HHHHHcCCHHHHHHHHHHHHccC
Q 017383          159 TARKELGKLKESIEDSEFALRLE  181 (372)
Q Consensus       159 ~~~~~lg~~~~A~~~~~~al~l~  181 (372)
                      .+...-|.-++|+.+..+.....
T Consensus       436 ~~~~~E~~Se~AL~~~~~~~s~~  458 (872)
T KOG4814|consen  436 QSFLAEDKSEEALTCLQKIKSSE  458 (872)
T ss_pred             HHHHHhcchHHHHHHHHHHHhhh
Confidence            78888899999999988877554

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.41  E-value=0.031  Score=54.80  Aligned_cols=119  Identities=12%  Similarity=0.033  Sum_probs=91.9

Q ss_pred             CCCCchhhHHHHHhhhhcCCCC--------chHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC----HHHHHHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEEST--------PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAY  127 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~--------~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~~la~~~  127 (372)
                      -.|++.+|+.............        ..+..+..+|..+..-|.|+.|...|..|+++-..    +-+-.|+|.+|
T Consensus       335 v~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~Y  414 (629)
T KOG2300|consen  335 VRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISY  414 (629)
T ss_pred             HhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHH
Confidence            5689999988877766533222        24567888999999999999999999999998655    55568899999


Q ss_pred             HHhcCHHHHHHHHHHHHhcCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 017383          128 LKLRRFQEAEDDCTEALNLDDRY----------IKAYSRRATARKELGKLKESIEDSEFALRLE  181 (372)
Q Consensus       128 ~~~g~~~eA~~~~~~Al~l~p~~----------~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~  181 (372)
                      +..|+-+.-.+..+   .+.|.+          ..+++..|...+..+++.||...+.+.|++.
T Consensus       415 L~~~~~ed~y~~ld---~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma  475 (629)
T KOG2300|consen  415 LRIGDAEDLYKALD---LIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA  475 (629)
T ss_pred             HHhccHHHHHHHHH---hcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence            99887554333332   234442          4568888999999999999999999999987

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=96.40  E-value=0.023  Score=44.78  Aligned_cols=88  Identities=16%  Similarity=0.281  Sum_probs=73.9

Q ss_pred             CCCCCchhhHHHHHhhhhcCCCCchH-HHHHHHHHHHHHhhc-----------HHHHHHHHHHHHccCCC-HHHHHHHHH
Q 017383           59 NSYSRNYDPVSHISSSLMNEESTPDA-TSEKELGNECFKQKK-----------FKEAIDCYSRSIALSPT-AVAYANRAM  125 (372)
Q Consensus        59 y~~g~~~~A~~~~~~al~~~p~~~~a-~~~~~~g~~~~~~g~-----------~~~Ai~~y~~al~~~p~-~~~~~~la~  125 (372)
                      |..|++-+|++..+..+....+...+ ..+...|.+++.+..           +-.|++||.++..+.|. +..++.+|.
T Consensus         7 ~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~la~   86 (111)
T PF04781_consen    7 FARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLFELAS   86 (111)
T ss_pred             HHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHHHHHH
Confidence            57899999999999999988776544 456778888876543           56799999999999999 888999998


Q ss_pred             HHHHhcCHHHHHHHHHHHHhc
Q 017383          126 AYLKLRRFQEAEDDCTEALNL  146 (372)
Q Consensus       126 ~~~~~g~~~eA~~~~~~Al~l  146 (372)
                      -+-...-|++++.-+.++|..
T Consensus        87 ~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   87 QLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             HhhhHHHHHHHHHHHHHHhcc
Confidence            877777899999999999875

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.37  E-value=0.11  Score=52.09  Aligned_cols=125  Identities=11%  Similarity=-0.018  Sum_probs=95.4

Q ss_pred             CCCchhhHHHHHhhhhcCCCCchHHH-----HHHHHHH-HH----HhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHH
Q 017383           61 YSRNYDPVSHISSSLMNEESTPDATS-----EKELGNE-CF----KQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLK  129 (372)
Q Consensus        61 ~g~~~~A~~~~~~al~~~p~~~~a~~-----~~~~g~~-~~----~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~  129 (372)
                      .||-+.++..+.++.+.. +...+.+     .+..+.. ++    .....+.|...........|+ ...++..|..+..
T Consensus       201 ~gdR~~GL~~L~~~~~~~-~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~  279 (468)
T PF10300_consen  201 SGDRELGLRLLWEASKSE-NIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERL  279 (468)
T ss_pred             CCcHHHHHHHHHHHhccC-CcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            388899999999988733 3322221     1111111 11    355778899999999999999 7778999999999


Q ss_pred             hcCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHH
Q 017383          130 LRRFQEAEDDCTEALNLDDRY----IKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE  186 (372)
Q Consensus       130 ~g~~~eA~~~~~~Al~l~p~~----~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~  186 (372)
                      .|+.++|+..+++++......    .-+++.+|.++..+++|++|..+|...++.+.-.+.
T Consensus       280 ~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka  340 (468)
T PF10300_consen  280 KGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKA  340 (468)
T ss_pred             hcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHH
Confidence            999999999999998544332    446889999999999999999999999987654433

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.37  E-value=0.06  Score=50.62  Aligned_cols=127  Identities=12%  Similarity=0.029  Sum_probs=99.6

Q ss_pred             CCCCCchhhHHHHHhhhhc-CCCCc-hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHH
Q 017383           59 NSYSRNYDPVSHISSSLMN-EESTP-DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQE  135 (372)
Q Consensus        59 y~~g~~~~A~~~~~~al~~-~p~~~-~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~e  135 (372)
                      |.+|+.+.-...+++++-. +++.| ..+..-.++..+...|-|++|.+..++++++++. ..+....+.++...|++++
T Consensus       148 fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Ke  227 (491)
T KOG2610|consen  148 FYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKE  227 (491)
T ss_pred             HhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhh
Confidence            3788888889999999877 66643 2444556778888999999999999999999998 8888999999999999999


Q ss_pred             HHHHHHHHHhcCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHH--ccCCCcH
Q 017383          136 AEDDCTEALNLDDR----YIKAYSRRATARKELGKLKESIEDSEFAL--RLEPQNQ  185 (372)
Q Consensus       136 A~~~~~~Al~l~p~----~~~a~~~lg~~~~~lg~~~~A~~~~~~al--~l~P~~~  185 (372)
                      +.++..+--..-..    ...-|..-+..+.+-+.|+.|+..|..-+  ++.-++.
T Consensus       228 g~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei~k~l~k~Da  283 (491)
T KOG2610|consen  228 GKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREIWKRLEKDDA  283 (491)
T ss_pred             HHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHHHHHhhccch
Confidence            99988775433221    13346667888999999999999998755  3444444

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=96.35  E-value=0.05  Score=43.45  Aligned_cols=85  Identities=18%  Similarity=0.163  Sum_probs=64.0

Q ss_pred             CCchhhHHHHHhhhhcCCCC----------chHHHHHHHHHHHHHhhcHHHHHHHHHHHHc-------cCCC-----HHH
Q 017383           62 SRNYDPVSHISSSLMNEEST----------PDATSEKELGNECFKQKKFKEAIDCYSRSIA-------LSPT-----AVA  119 (372)
Q Consensus        62 g~~~~A~~~~~~al~~~p~~----------~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~-------~~p~-----~~~  119 (372)
                      |-|++|...|.++++..-..          .++.++-.++..+..+|+|++++....++|.       ++.+     ..+
T Consensus        23 g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaa  102 (144)
T PF12968_consen   23 GAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAA  102 (144)
T ss_dssp             T-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHH
Confidence            67888999999998754332          2455677888999999999987776666664       4554     455


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 017383          120 YANRAMAYLKLRRFQEAEDDCTEALNL  146 (372)
Q Consensus       120 ~~~la~~~~~~g~~~eA~~~~~~Al~l  146 (372)
                      -+++|.++..+|+.++|+..|+.+-++
T Consensus       103 Vfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen  103 VFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            688999999999999999999998653

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=96.28  E-value=0.075  Score=50.77  Aligned_cols=104  Identities=18%  Similarity=0.054  Sum_probs=58.1

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCc--hHHHHHHHHHHHHHhhcHHHHHHHHHHHHcc---CC-------------------
Q 017383           60 SYSRNYDPVSHISSSLMNEESTP--DATSEKELGNECFKQKKFKEAIDCYSRSIAL---SP-------------------  115 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~--~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~---~p-------------------  115 (372)
                      ..|.++.|...+.++...++...  ........+..++..|+..+|+..+...+..   ..                   
T Consensus       158 k~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (352)
T PF02259_consen  158 KAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEV  237 (352)
T ss_pred             HCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhcccccccc
Confidence            45666666666666665442211  2223445566666667766666666665550   00                   


Q ss_pred             ------C-------HHHHHHHHHHHHHh------cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 017383          116 ------T-------AVAYANRAMAYLKL------RRFQEAEDDCTEALNLDDRYIKAYSRRATARKE  163 (372)
Q Consensus       116 ------~-------~~~~~~la~~~~~~------g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~  163 (372)
                            .       +.++..+|......      +.+++++..|..|+.++|+..++|+..|..+..
T Consensus       238 ~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~  304 (352)
T PF02259_consen  238 ISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDK  304 (352)
T ss_pred             ccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHH
Confidence                  0       34444455544444      556666666666666666666666666655443

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.20  E-value=0.0079  Score=53.46  Aligned_cols=56  Identities=18%  Similarity=0.287  Sum_probs=29.7

Q ss_pred             HhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCc
Q 017383          129 KLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN  184 (372)
Q Consensus       129 ~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~  184 (372)
                      ..++.+.|.+.|.+|+.+.|.....|+++|......|+++.|...|++.++++|.+
T Consensus         7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            34455555555555555555555555555555555555555555555555555543

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=96.17  E-value=0.074  Score=53.89  Aligned_cols=147  Identities=14%  Similarity=0.076  Sum_probs=105.5

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCc--hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-------------------HH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTP--DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------------------AV  118 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~--~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-------------------~~  118 (372)
                      +.|+.+.|...|++++...-...  -+.+|.+.|..-.+..+++.|+.+.++|...-.+                   ..
T Consensus       399 ~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlk  478 (835)
T KOG2047|consen  399 NNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLK  478 (835)
T ss_pred             hcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHH
Confidence            67888888888888888663322  2455677777777888888888888888765211                   24


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC--CCcHHHH--------
Q 017383          119 AYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLE--PQNQEIK--------  188 (372)
Q Consensus       119 ~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~--P~~~~~~--------  188 (372)
                      +|...+...-..|-++.....|.+.|.|.--.+..-.|.|..+....-+++|...|++.+.+.  |+-.++|        
T Consensus       479 iWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi  558 (835)
T KOG2047|consen  479 IWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFI  558 (835)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHH
Confidence            555566666667777777788888888877778888888888888888888888888888776  3444443        


Q ss_pred             -----HHHHHHHHHHHHHHHhhh
Q 017383          189 -----KQLAEVKSLYEKEVFQKA  206 (372)
Q Consensus       189 -----~~l~~a~~~~~~~~~~~~  206 (372)
                           ..+..|+.+|++++..=|
T Consensus       559 ~rygg~klEraRdLFEqaL~~Cp  581 (835)
T KOG2047|consen  559 KRYGGTKLERARDLFEQALDGCP  581 (835)
T ss_pred             HHhcCCCHHHHHHHHHHHHhcCC
Confidence                 345666777777766443

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=96.01  E-value=0.1  Score=46.65  Aligned_cols=99  Identities=11%  Similarity=0.051  Sum_probs=71.1

Q ss_pred             CCCCchhhHHHHHhhhh-----cCCCCchHHHHHHHHHHHHHhhc-------HHHHHHHHHHHHccCC--C-----HHHH
Q 017383           60 SYSRNYDPVSHISSSLM-----NEESTPDATSEKELGNECFKQKK-------FKEAIDCYSRSIALSP--T-----AVAY  120 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~-----~~p~~~~a~~~~~~g~~~~~~g~-------~~~Ai~~y~~al~~~p--~-----~~~~  120 (372)
                      ....+++|+..|.-|+-     ..+....|..+..+|.+|...|+       +..|+..|.++++...  .     ..++
T Consensus        89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~  168 (214)
T PF09986_consen   89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL  168 (214)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence            33577888888877764     22223456677788888888777       5567777777776542  2     6788


Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhcCCCCH-HHHHHHH
Q 017383          121 ANRAMAYLKLRRFQEAEDDCTEALNLDDRYI-KAYSRRA  158 (372)
Q Consensus       121 ~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~-~a~~~lg  158 (372)
                      +.+|..+.++|++++|..+|.+++....... ..+..+|
T Consensus       169 YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~A  207 (214)
T PF09986_consen  169 YLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMA  207 (214)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHH
Confidence            9999999999999999999999998654433 3444444

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=95.97  E-value=0.18  Score=50.71  Aligned_cols=127  Identities=17%  Similarity=0.002  Sum_probs=100.0

Q ss_pred             hHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHH-HHHHHHH
Q 017383           67 PVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE-DDCTEAL  144 (372)
Q Consensus        67 A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~-~~~~~Al  144 (372)
                      ++..+...+.+++.++.......+...+...++...+.-....++..+|. +.++.++|.+....|....+. .+++.+.
T Consensus        50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~  129 (620)
T COG3914          50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAE  129 (620)
T ss_pred             HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            56666666777777666533223677778889999999999999999998 888999998888777666655 5555599


Q ss_pred             hcCCCCHHHHHHH------HHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHH
Q 017383          145 NLDDRYIKAYSRR------ATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAE  193 (372)
Q Consensus       145 ~l~p~~~~a~~~l------g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~  193 (372)
                      ...|++......+      |.....+|+..++..+.+++..+.|.++.+.+.+--
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~  184 (620)
T COG3914         130 WLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMT  184 (620)
T ss_pred             hcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHH
Confidence            9999997776665      899999999999999999999999999877544433

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=95.89  E-value=0.063  Score=41.02  Aligned_cols=64  Identities=17%  Similarity=0.147  Sum_probs=49.6

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCc--HHHHHHHHHHHHHHH
Q 017383          136 AEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN--QEIKKQLAEVKSLYE  199 (372)
Q Consensus       136 A~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~--~~~~~~l~~a~~~~~  199 (372)
                      .+..+++++..+|++..+.+.+|..+...|++++|++.+-.+++.+++.  ..++..+-.+...++
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg   72 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLG   72 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcC
Confidence            4567888899999999999999999999999999999999999998765  556666666665554

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=95.87  E-value=0.34  Score=49.30  Aligned_cols=145  Identities=14%  Similarity=0.148  Sum_probs=115.0

Q ss_pred             CCCCchhhHHHHHhhhh-cCCCCch---HHHHHHHHHHHHHhhcHHHHHHHHHHHHccC-CC----HHHHHHHHHHHHHh
Q 017383           60 SYSRNYDPVSHISSSLM-NEESTPD---ATSEKELGNECFKQKKFKEAIDCYSRSIALS-PT----AVAYANRAMAYLKL  130 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~-~~p~~~~---a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~-p~----~~~~~~la~~~~~~  130 (372)
                      ..|+..+-+..|..|+. .+|....   ...|...|..|...|+.+.|...|+++++.. +.    +.+|.+-|..-+..
T Consensus       359 ~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh  438 (835)
T KOG2047|consen  359 YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRH  438 (835)
T ss_pred             hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhh
Confidence            45677888888988876 5555321   1246688999999999999999999999986 33    78899999999999


Q ss_pred             cCHHHHHHHHHHHHhcCCC------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHH-----
Q 017383          131 RRFQEAEDDCTEALNLDDR------------------YIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI-----  187 (372)
Q Consensus       131 g~~~eA~~~~~~Al~l~p~------------------~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~-----  187 (372)
                      .+++.|+...++|+..-..                  ....|...+.....+|-++.....|++++.|.-..+++     
T Consensus       439 ~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyA  518 (835)
T KOG2047|consen  439 ENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYA  518 (835)
T ss_pred             hhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            9999999999999876322                  24567788888889999999999999999988666665     


Q ss_pred             -----HHHHHHHHHHHHHHHHh
Q 017383          188 -----KKQLAEVKSLYEKEVFQ  204 (372)
Q Consensus       188 -----~~~l~~a~~~~~~~~~~  204 (372)
                           ...+.++.+.|++++..
T Consensus       519 mfLEeh~yfeesFk~YErgI~L  540 (835)
T KOG2047|consen  519 MFLEEHKYFEESFKAYERGISL  540 (835)
T ss_pred             HHHHhhHHHHHHHHHHHcCCcc
Confidence                 35677777888876443

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=95.72  E-value=0.55  Score=43.74  Aligned_cols=124  Identities=12%  Similarity=-0.032  Sum_probs=91.4

Q ss_pred             CCCCCchhhHHHHHhhhhcC----CCCc--hHHHHHHHHHHHHHhh-cHHHHHHHHHHHHcc----CC------C-----
Q 017383           59 NSYSRNYDPVSHISSSLMNE----ESTP--DATSEKELGNECFKQK-KFKEAIDCYSRSIAL----SP------T-----  116 (372)
Q Consensus        59 y~~g~~~~A~~~~~~al~~~----p~~~--~a~~~~~~g~~~~~~g-~~~~Ai~~y~~al~~----~p------~-----  116 (372)
                      ...|+++.|..++.++-...    |...  -+..+++.|...+..+ +|+.|+.++++++++    ..      +     
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr   83 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR   83 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence            46789999999999986644    2221  2346789999999999 999999999999987    21      1     


Q ss_pred             HHHHHHHHHHHHHhcCHHHH---HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 017383          117 AVAYANRAMAYLKLRRFQEA---EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEP  182 (372)
Q Consensus       117 ~~~~~~la~~~~~~g~~~eA---~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P  182 (372)
                      ..++..++.+|+..+.++..   ....+.+-...|+.+..++..=.++...++.+++.+.+.+.+.--+
T Consensus        84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~  152 (278)
T PF08631_consen   84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD  152 (278)
T ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence            56778899999998876643   3344444445688777775444455558999999999999887544

It is also involved in sporulation [].

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.69  E-value=0.047  Score=47.51  Aligned_cols=91  Identities=19%  Similarity=0.096  Sum_probs=70.9

Q ss_pred             CCCCchhhHHHHHhhhhcCCC-CchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHhcCHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEES-TPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAED  138 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~-~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~~la~~~~~~g~~~eA~~  138 (372)
                      ..|++++|+..++.++....+ +..+.+-..+|.+.+.+|.+++|+..++..-.-+-.+...-.+|.+++..|+-++|..
T Consensus       101 e~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~  180 (207)
T COG2976         101 EANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARA  180 (207)
T ss_pred             hhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHH
Confidence            779999999999999864422 2234455688999999999999998876643211114556779999999999999999


Q ss_pred             HHHHHHhcCCCC
Q 017383          139 DCTEALNLDDRY  150 (372)
Q Consensus       139 ~~~~Al~l~p~~  150 (372)
                      .|++|+..+++.
T Consensus       181 ay~kAl~~~~s~  192 (207)
T COG2976         181 AYEKALESDASP  192 (207)
T ss_pred             HHHHHHHccCCh
Confidence            999999987554

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=95.69  E-value=0.24  Score=54.49  Aligned_cols=125  Identities=12%  Similarity=0.021  Sum_probs=110.6

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC---HHHHHHHHHHHHHhcCHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT---AVAYANRAMAYLKLRRFQEA  136 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~---~~~~~~la~~~~~~g~~~eA  136 (372)
                      ..+.+++|.++|+..++..-+...  .|..+|..++++.+-+.|...+.+||..-|.   .......|..-++.|+-+.+
T Consensus      1542 k~ek~~~A~ell~~m~KKF~q~~~--vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRG 1619 (1710)
T KOG1070|consen 1542 KSEKNDEADELLRLMLKKFGQTRK--VWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERG 1619 (1710)
T ss_pred             HhhcchhHHHHHHHHHHHhcchhh--HHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhh
Confidence            346889999999999987754334  4668899999999999999999999999997   77788899999999999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHH
Q 017383          137 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE  186 (372)
Q Consensus       137 ~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~  186 (372)
                      ...|+-.+.-+|.-.+.|.-+...-...|+.+-+...|++++.+.=.-..
T Consensus      1620 RtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kk 1669 (1710)
T KOG1070|consen 1620 RTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKK 1669 (1710)
T ss_pred             HHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhH
Confidence            99999999999999999999999999999999999999999988654333

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.68  E-value=0.38  Score=43.50  Aligned_cols=97  Identities=22%  Similarity=0.150  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----CCCHHH
Q 017383           86 SEKELGNECFKQKKFKEAIDCYSRSIALSPT-------AVAYANRAMAYLKLRRFQEAEDDCTEALNLD-----DRYIKA  153 (372)
Q Consensus        86 ~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-------~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~-----p~~~~a  153 (372)
                      .+..-+++|...++|++|-.|+.+|++...+       +.+|-..|+..-.+..+.++...+++|..+.     |+-+..
T Consensus        33 ~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAm  112 (308)
T KOG1585|consen   33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAM  112 (308)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHH
Confidence            3445566677788999999999999854322       6777888888889999999999999998874     333333


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 017383          154 YSRRATARKELGKLKESIEDSEFALRLEP  182 (372)
Q Consensus       154 ~~~lg~~~~~lg~~~~A~~~~~~al~l~P  182 (372)
                      -...+--..+.-+.++|+..|++++.+--
T Consensus       113 aleKAak~lenv~Pd~AlqlYqralavve  141 (308)
T KOG1585|consen  113 ALEKAAKALENVKPDDALQLYQRALAVVE  141 (308)
T ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Confidence            33344445566788999999999887644

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=95.50  E-value=0.3  Score=48.28  Aligned_cols=92  Identities=12%  Similarity=0.064  Sum_probs=72.9

Q ss_pred             HHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHcc
Q 017383          103 AIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGK-LKESIEDSEFALRL  180 (372)
Q Consensus       103 Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~-~~~A~~~~~~al~l  180 (372)
                      -+..|+.|+...+. ...|.+...-..+.+.+.+--..|.+++..+|+++..|..-|.-.+..+. .+.|...|.++|+.
T Consensus        90 Iv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~  169 (568)
T KOG2396|consen   90 IVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRF  169 (568)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhc
Confidence            45667888877774 77777666555566668888899999999999999999998887777776 89999999999999


Q ss_pred             CCCcHHHHHHHHHH
Q 017383          181 EPQNQEIKKQLAEV  194 (372)
Q Consensus       181 ~P~~~~~~~~l~~a  194 (372)
                      +|+++..+..+=+.
T Consensus       170 npdsp~Lw~eyfrm  183 (568)
T KOG2396|consen  170 NPDSPKLWKEYFRM  183 (568)
T ss_pred             CCCChHHHHHHHHH
Confidence            99998887544433

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=95.27  E-value=0.037  Score=34.92  Aligned_cols=27  Identities=41%  Similarity=0.391  Sum_probs=13.4

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 017383          119 AYANRAMAYLKLRRFQEAEDDCTEALN  145 (372)
Q Consensus       119 ~~~~la~~~~~~g~~~eA~~~~~~Al~  145 (372)
                      ++.++|.+|..+|++++|+.++++++.
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            344555555555555555555555544

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=95.22  E-value=0.8  Score=42.65  Aligned_cols=115  Identities=16%  Similarity=0.042  Sum_probs=69.1

Q ss_pred             CCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHH----hhcHHHHHHHHHHHHccC-CC-HHHHHHHHHHHHHhc----
Q 017383           62 SRNYDPVSHISSSLMNEESTPDATSEKELGNECFK----QKKFKEAIDCYSRSIALS-PT-AVAYANRAMAYLKLR----  131 (372)
Q Consensus        62 g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~----~g~~~~Ai~~y~~al~~~-p~-~~~~~~la~~~~~~g----  131 (372)
                      .+...|+..|..+....    .+...+.+|..|..    ..++.+|..+|.++.... +. ..+.+++|.+|..-.    
T Consensus        91 ~~~~~A~~~~~~~a~~g----~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~  166 (292)
T COG0790          91 RDKTKAADWYRCAAADG----LAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALA  166 (292)
T ss_pred             ccHHHHHHHHHHHhhcc----cHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhc
Confidence            34666777776444433    22234567776665    447777777777777653 22 344666666665531    


Q ss_pred             ---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHccCC
Q 017383          132 ---RFQEAEDDCTEALNLDDRYIKAYSRRATARKE----LGKLKESIEDSEFALRLEP  182 (372)
Q Consensus       132 ---~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~----lg~~~~A~~~~~~al~l~P  182 (372)
                         +...|+..|.+|-...  +..+.+++|.+|..    ..++.+|..+|.++-....
T Consensus       167 ~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~  222 (292)
T COG0790         167 VAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD  222 (292)
T ss_pred             ccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence               2235777777766655  66677777765543    2367777777777776665

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=95.20  E-value=0.32  Score=44.67  Aligned_cols=72  Identities=17%  Similarity=0.155  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHH
Q 017383          117 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK  188 (372)
Q Consensus       117 ~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~  188 (372)
                      .....++=.+|...++++.|..+.++.+.++|.++.-+--+|.+|.++|.+.-|+.+++..+...|+.+.+.
T Consensus       181 ~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~  252 (269)
T COG2912         181 SRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAE  252 (269)
T ss_pred             HHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHH
Confidence            556677778899999999999999999999999999999999999999999999999999999999987753

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=95.12  E-value=0.034  Score=49.54  Aligned_cols=56  Identities=21%  Similarity=0.276  Sum_probs=34.6

Q ss_pred             HHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 017383           95 FKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY  150 (372)
Q Consensus        95 ~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~  150 (372)
                      ...++++.|.+.|.+++++.|. ...|+.+|....+.|+++.|...|++.++++|.+
T Consensus         6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            4455666666666666666666 5556666666666666666666666666666554

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=94.98  E-value=0.42  Score=40.44  Aligned_cols=81  Identities=12%  Similarity=-0.054  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 017383           87 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG  165 (372)
Q Consensus        87 ~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg  165 (372)
                      +.....+-...++.+++...+...--+.|+ +.+-..-|..++..|+|.+|+..++.+..-.|..+.+-..++.|++.+|
T Consensus        13 Lie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~   92 (160)
T PF09613_consen   13 LIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALG   92 (160)
T ss_pred             HHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcC
Confidence            344455555566666666666666556666 5555556666666666666666666666666666666666666666666


Q ss_pred             CH
Q 017383          166 KL  167 (372)
Q Consensus       166 ~~  167 (372)
                      +.
T Consensus        93 D~   94 (160)
T PF09613_consen   93 DP   94 (160)
T ss_pred             Ch
Confidence            53

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=94.97  E-value=0.27  Score=37.53  Aligned_cols=46  Identities=26%  Similarity=0.256  Sum_probs=23.0

Q ss_pred             HHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 017383          105 DCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY  150 (372)
Q Consensus       105 ~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~  150 (372)
                      ..+++.++.+|+ ..+.+.+|.+++..|++++|++.+-.+++.++++
T Consensus         9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~   55 (90)
T PF14561_consen    9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY   55 (90)
T ss_dssp             HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            344445555554 5555555555555555555555555555555443

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=94.94  E-value=0.44  Score=49.01  Aligned_cols=118  Identities=14%  Similarity=0.057  Sum_probs=90.3

Q ss_pred             CCCchhhHHHHHhhhhc---CCCCchHHHHHHHHHHHHHh----h-cHHHHHHHHHHHHccCCCHHHHHHHHHHHHHhc-
Q 017383           61 YSRNYDPVSHISSSLMN---EESTPDATSEKELGNECFKQ----K-KFKEAIDCYSRSIALSPTAVAYANRAMAYLKLR-  131 (372)
Q Consensus        61 ~g~~~~A~~~~~~al~~---~p~~~~a~~~~~~g~~~~~~----g-~~~~Ai~~y~~al~~~p~~~~~~~la~~~~~~g-  131 (372)
                      ..|.+.|+.+|..+...   .-......+.+.+|.+|.+.    . ++..|+.+|.++-.+.. +.+.+.+|.+|..-. 
T Consensus       262 ~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~  340 (552)
T KOG1550|consen  262 TQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTK  340 (552)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCc
Confidence            35889999999998771   10111222356889998874    3 78999999999987642 567778888887765 


Q ss_pred             --CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHccC
Q 017383          132 --RFQEAEDDCTEALNLDDRYIKAYSRRATARKEL----GKLKESIEDSEFALRLE  181 (372)
Q Consensus       132 --~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~l----g~~~~A~~~~~~al~l~  181 (372)
                        ++..|..+|..|..  -.+..+++++|.+|..=    .+...|..+|.++-..+
T Consensus       341 ~~d~~~A~~yy~~Aa~--~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g  394 (552)
T KOG1550|consen  341 ERDYRRAFEYYSLAAK--AGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG  394 (552)
T ss_pred             cccHHHHHHHHHHHHH--cCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence              67899999999876  46788999999887643    47899999999999988

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=94.93  E-value=0.1  Score=54.40  Aligned_cols=107  Identities=11%  Similarity=-0.034  Sum_probs=63.2

Q ss_pred             CCCCchhhHHHHHhhh----------hcCCCC--------chHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCCHHHHH
Q 017383           60 SYSRNYDPVSHISSSL----------MNEEST--------PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYA  121 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al----------~~~p~~--------~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~  121 (372)
                      ..+|...|+++|+++-          ..+|..        .+...|.-.|..+-..|+.+.|+.+|..|-.       |+
T Consensus       870 ar~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-------~f  942 (1416)
T KOG3617|consen  870 ARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD-------YF  942 (1416)
T ss_pred             hhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-------hh
Confidence            4567777888887652          222221        1112344557777777888888888777543       33


Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 017383          122 NRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFAL  178 (372)
Q Consensus       122 ~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al  178 (372)
                      .+-.++.-+|+.++|-...++     ..+-.+.|.+|..|...|++.+|+..|.+|-
T Consensus       943 s~VrI~C~qGk~~kAa~iA~e-----sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq  994 (1416)
T KOG3617|consen  943 SMVRIKCIQGKTDKAARIAEE-----SGDKAACYHLARMYENDGDVVKAVKFFTRAQ  994 (1416)
T ss_pred             hheeeEeeccCchHHHHHHHh-----cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            344444455555555443332     4556667777777777777777777666653

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=94.92  E-value=0.31  Score=39.90  Aligned_cols=77  Identities=13%  Similarity=0.139  Sum_probs=62.2

Q ss_pred             hHHHHHHHHHHHHHh---hcHHHHHHHHHHHHc-cCCC--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHH
Q 017383           83 DATSEKELGNECFKQ---KKFKEAIDCYSRSIA-LSPT--AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSR  156 (372)
Q Consensus        83 ~a~~~~~~g~~~~~~---g~~~~Ai~~y~~al~-~~p~--~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~  156 (372)
                      .....++++.++.+.   .+..+.|.+++..++ -.|.  -...+.+|..++++++|+.++.++...++..|++..+...
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L  110 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL  110 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence            445567888888754   456789999999997 4555  6777889999999999999999999999999999887654


Q ss_pred             HHH
Q 017383          157 RAT  159 (372)
Q Consensus       157 lg~  159 (372)
                      .-.
T Consensus       111 k~~  113 (149)
T KOG3364|consen  111 KET  113 (149)
T ss_pred             HHH
Confidence            443

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=94.90  E-value=0.15  Score=50.14  Aligned_cols=124  Identities=15%  Similarity=0.059  Sum_probs=99.2

Q ss_pred             CCCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 017383           59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE  137 (372)
Q Consensus        59 y~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~  137 (372)
                      ++.||.-.|-.-...+|+..|..+....  ..+.++...|+|+.|......+-.+-.. ..+..-+-....++|++++|.
T Consensus       300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~--l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~  377 (831)
T PRK15180        300 LADGDIIAASQQLFAALRNQQQDPVLIQ--LRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL  377 (831)
T ss_pred             hhccCHHHHHHHHHHHHHhCCCCchhhH--HHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence            4668888888888889998888777754  5688889999999999887766554433 455555666788999999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCc
Q 017383          138 DDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN  184 (372)
Q Consensus       138 ~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~  184 (372)
                      ....-.+.-.-.+++...--+..-..+|-+++|..++.+++.++|..
T Consensus       378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~  424 (831)
T PRK15180        378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET  424 (831)
T ss_pred             HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence            99988888777777776666677788999999999999999999753

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=94.87  E-value=0.05  Score=34.30  Aligned_cols=30  Identities=20%  Similarity=0.401  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHHhhcHHHHHHHHHHHHcc
Q 017383           84 ATSEKELGNECFKQKKFKEAIDCYSRSIAL  113 (372)
Q Consensus        84 a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~  113 (372)
                      +.++.++|.+|...|+|++|+.++++++.+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            345789999999999999999999999875

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=94.81  E-value=0.25  Score=36.42  Aligned_cols=62  Identities=11%  Similarity=0.177  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 017383           85 TSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNL  146 (372)
Q Consensus        85 ~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~~la~~~~~~g~~~eA~~~~~~Al~l  146 (372)
                      ......|.-+|...+.++|+..+.++++..++    ..++-.+..+|...|+|.+.+.+.-+=+.+
T Consensus         7 k~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen    7 KQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI   72 (80)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33457788889999999999999999998776    455566677888999999988876655443

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.80  E-value=0.46  Score=42.95  Aligned_cols=121  Identities=16%  Similarity=0.098  Sum_probs=85.7

Q ss_pred             CC-CCCCchhhHHHHHhhhhcCCCCch----HHHHHHHHHHHHHhhcHHHHHHHHHHHHccC-----CC-HHHHHHHHHH
Q 017383           58 GN-SYSRNYDPVSHISSSLMNEESTPD----ATSEKELGNECFKQKKFKEAIDCYSRSIALS-----PT-AVAYANRAMA  126 (372)
Q Consensus        58 ~y-~~g~~~~A~~~~~~al~~~p~~~~----a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~-----p~-~~~~~~la~~  126 (372)
                      +| ...+|++|..++.++.+...++..    +..+-..|...-....+.++..+|++|..+.     |+ +..-...|.=
T Consensus        40 afRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak  119 (308)
T KOG1585|consen   40 AFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAK  119 (308)
T ss_pred             HHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHH
Confidence            35 567899999999999865544321    2234456677778899999999999999874     44 3333455555


Q ss_pred             HHHhcCHHHHHHHHHHHHhcCC---CCH---HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 017383          127 YLKLRRFQEAEDDCTEALNLDD---RYI---KAYSRRATARKELGKLKESIEDSEFAL  178 (372)
Q Consensus       127 ~~~~g~~~eA~~~~~~Al~l~p---~~~---~a~~~lg~~~~~lg~~~~A~~~~~~al  178 (372)
                      .+..-+.++|+..|++++.+--   ..-   ..+-..+.++..+.++++|-..|.+-.
T Consensus       120 ~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~  177 (308)
T KOG1585|consen  120 ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEG  177 (308)
T ss_pred             HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhh
Confidence            6677889999999999987633   233   334446678888899999887776643

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=94.79  E-value=0.25  Score=53.43  Aligned_cols=98  Identities=20%  Similarity=0.206  Sum_probs=79.8

Q ss_pred             HHHHHHHhhcHHHHHHHHHHHHccCCC----HHHHHHHHHHHHHhc-------CHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 017383           90 LGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLR-------RFQEAEDDCTEALNLDDRYIKAYSRRA  158 (372)
Q Consensus        90 ~g~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~~la~~~~~~g-------~~~eA~~~~~~Al~l~p~~~~a~~~lg  158 (372)
                      ...++...+.|+.|+..|++.-...|.    -.+.+..|.+++..-       .+.+|+.-|++. .-.|.-+--|...|
T Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  559 (932)
T PRK13184        481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLGKA  559 (932)
T ss_pred             CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHhHH
Confidence            356788899999999999999999997    788899999887663       355566665553 23455566688888


Q ss_pred             HHHHHcCCHHHHHHHHHHHHccCCCcHHHH
Q 017383          159 TARKELGKLKESIEDSEFALRLEPQNQEIK  188 (372)
Q Consensus       159 ~~~~~lg~~~~A~~~~~~al~l~P~~~~~~  188 (372)
                      .+|..+|+|++-+.+|.-|++..|+++++-
T Consensus       560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  589 (932)
T PRK13184        560 LVYQRLGEYNEEIKSLLLALKRYSQHPEIS  589 (932)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhcCCCCccH
Confidence            999999999999999999999999998874

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=94.71  E-value=0.97  Score=42.09  Aligned_cols=116  Identities=17%  Similarity=0.030  Sum_probs=85.7

Q ss_pred             CCchhhHHHHHhhhhcCCCCch-HHHHHHHHHHHHHh-----h--cHHHHHHHHHHHHccCCCHHHHHHHHHHHHH----
Q 017383           62 SRNYDPVSHISSSLMNEESTPD-ATSEKELGNECFKQ-----K--KFKEAIDCYSRSIALSPTAVAYANRAMAYLK----  129 (372)
Q Consensus        62 g~~~~A~~~~~~al~~~p~~~~-a~~~~~~g~~~~~~-----g--~~~~Ai~~y~~al~~~p~~~~~~~la~~~~~----  129 (372)
                      .|+.+|..+|.++....-.  . ....+.+|..|..-     -  +...|+..|.++.... ...+.+++|.+|..    
T Consensus       127 ~d~~~A~~~~~~Aa~~g~~--~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~-~~~a~~~lg~~y~~G~Gv  203 (292)
T COG0790         127 LDLVKALKYYEKAAKLGNV--EAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG-NPDAQLLLGRMYEKGLGV  203 (292)
T ss_pred             cCHHHHHHHHHHHHHcCCh--hHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc-CHHHHHHHHHHHHcCCCC
Confidence            3889999999999998733  3 33356777776653     1  3347999999987765 47788888988865    


Q ss_pred             hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---------------CHHHHHHHHHHHHccCCC
Q 017383          130 LRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG---------------KLKESIEDSEFALRLEPQ  183 (372)
Q Consensus       130 ~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg---------------~~~~A~~~~~~al~l~P~  183 (372)
                      ..++.+|..+|.+|.....  ..++++++ ++...|               +...|..++..+....+.
T Consensus       204 ~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  269 (292)
T COG0790         204 PRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFD  269 (292)
T ss_pred             CcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCCh
Confidence            3489999999999999887  88899999 666666               556666666666555443

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=94.59  E-value=0.12  Score=51.39  Aligned_cols=91  Identities=16%  Similarity=-0.010  Sum_probs=77.6

Q ss_pred             CCCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHh---hcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHH
Q 017383           59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQ---KKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQ  134 (372)
Q Consensus        59 y~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~---g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~  134 (372)
                      +..+....|+..|.+++...|.  ..+.+-+++.++++.   |+.-.|+.....|+.++|. ..+++.++.++..++++.
T Consensus       385 ly~~~~~~~i~~~s~a~q~~~~--~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~  462 (758)
T KOG1310|consen  385 LYESIVSGAISHYSRAIQYVPD--AIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYL  462 (758)
T ss_pred             hhhHHHHHHHHHHHHHhhhccc--hhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHH
Confidence            4556777899999999999987  555577888888774   5677789999999999998 899999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCH
Q 017383          135 EAEDDCTEALNLDDRYI  151 (372)
Q Consensus       135 eA~~~~~~Al~l~p~~~  151 (372)
                      +|+.+...+....|.+.
T Consensus       463 eal~~~~alq~~~Ptd~  479 (758)
T KOG1310|consen  463 EALSCHWALQMSFPTDV  479 (758)
T ss_pred             HhhhhHHHHhhcCchhh
Confidence            99999998888888653

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=94.54  E-value=1  Score=42.80  Aligned_cols=113  Identities=19%  Similarity=0.143  Sum_probs=91.5

Q ss_pred             hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--C-C------
Q 017383           83 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-----AVAYANRAMAYLKLRRFQEAEDDCTEALNL--D-D------  148 (372)
Q Consensus        83 ~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-----~~~~~~la~~~~~~g~~~eA~~~~~~Al~l--~-p------  148 (372)
                      .+..+...+.++.+.|.++-|...+.++...++.     +.+.+..+..+...|+..+|+..+...+..  . .      
T Consensus       145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~  224 (352)
T PF02259_consen  145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN  224 (352)
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence            4556778999999999999999999999987632     667778899999999999999998888771  1 0      


Q ss_pred             -------------------------CCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHccCCCcHHHHHHHHHHH
Q 017383          149 -------------------------RYIKAYSRRATARKEL------GKLKESIEDSEFALRLEPQNQEIKKQLAEVK  195 (372)
Q Consensus       149 -------------------------~~~~a~~~lg~~~~~l------g~~~~A~~~~~~al~l~P~~~~~~~~l~~a~  195 (372)
                                               ..++++..+|.....+      +..+++...|.+++.++|....++..++...
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~  302 (352)
T PF02259_consen  225 AELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN  302 (352)
T ss_pred             HHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence                                     1156777888887788      8899999999999999998887776655543

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=94.29  E-value=0.94  Score=41.42  Aligned_cols=121  Identities=9%  Similarity=0.023  Sum_probs=70.3

Q ss_pred             hhhHHHHHhhhhcCCCCchHHHHHHHHHHHH-HhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHH-HHHHHHH
Q 017383           65 YDPVSHISSSLMNEESTPDATSEKELGNECF-KQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQ-EAEDDCT  141 (372)
Q Consensus        65 ~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~-~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~-eA~~~~~  141 (372)
                      .+|+.+-..++.++|-+...+.  .+-.++. -..+..+-+++.+..++-+|. -.+|..|-.+.-.+|++. .-++.+.
T Consensus        60 ~RAl~LT~d~i~lNpAnYTVW~--yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~  137 (318)
T KOG0530|consen   60 PRALQLTEDAIRLNPANYTVWQ--YRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTK  137 (318)
T ss_pred             HHHHHHHHHHHHhCcccchHHH--HHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHH
Confidence            3445555555555555443332  2222222 233455666666666666665 666666666666666655 5566666


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHH
Q 017383          142 EALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI  187 (372)
Q Consensus       142 ~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~  187 (372)
                      .++..+..+..+|..+-.+....+.++.-+.+....|+.+--|..+
T Consensus       138 ~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSA  183 (318)
T KOG0530|consen  138 LMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSA  183 (318)
T ss_pred             HHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccch
Confidence            6666666666666666666666666666666666666665544444

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=94.29  E-value=0.91  Score=43.95  Aligned_cols=103  Identities=14%  Similarity=0.001  Sum_probs=80.1

Q ss_pred             chHHHHHHHHHHHHHhhcHHHHHHHHHHHHcc----CCC-HHHHHHHHHHHHH---hcCHHHHHHHHHHH-HhcCCCCHH
Q 017383           82 PDATSEKELGNECFKQKKFKEAIDCYSRSIAL----SPT-AVAYANRAMAYLK---LRRFQEAEDDCTEA-LNLDDRYIK  152 (372)
Q Consensus        82 ~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~----~p~-~~~~~~la~~~~~---~g~~~eA~~~~~~A-l~l~p~~~~  152 (372)
                      ..+....++=..|....+|+.-+...+..-.+    -++ ..+.+..|.++-+   .|+.++|+..+..+ ....+.+++
T Consensus       139 ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d  218 (374)
T PF13281_consen  139 LSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD  218 (374)
T ss_pred             cChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH
Confidence            34444556667788999999888888876655    222 6667788888888   89999999999994 455677899


Q ss_pred             HHHHHHHHHHHc---------CCHHHHHHHHHHHHccCCCc
Q 017383          153 AYSRRATARKEL---------GKLKESIEDSEFALRLEPQN  184 (372)
Q Consensus       153 a~~~lg~~~~~l---------g~~~~A~~~~~~al~l~P~~  184 (372)
                      .+..+|.+|..+         ...++|+.+|.++..++|+.
T Consensus       219 ~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~  259 (374)
T PF13281_consen  219 TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY  259 (374)
T ss_pred             HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc
Confidence            999999988753         34788999999999999754

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=94.15  E-value=0.81  Score=38.75  Aligned_cols=89  Identities=11%  Similarity=-0.049  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHH
Q 017383          117 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS  196 (372)
Q Consensus       117 ~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~  196 (372)
                      ...+..+..+-+..++.+++...+....-+.|..+..-..-|..+...|++.+|+..|+.+..-.|..+-+...+.-+..
T Consensus        10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~   89 (160)
T PF09613_consen   10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY   89 (160)
T ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence            56677888888899999999999999999999999999999999999999999999999999999999988888877776


Q ss_pred             HHHHHHHhh
Q 017383          197 LYEKEVFQK  205 (372)
Q Consensus       197 ~~~~~~~~~  205 (372)
                      ..+...|..
T Consensus        90 ~~~D~~Wr~   98 (160)
T PF09613_consen   90 ALGDPSWRR   98 (160)
T ss_pred             HcCChHHHH
Confidence            655544443

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=94.06  E-value=1.5  Score=42.39  Aligned_cols=119  Identities=9%  Similarity=0.009  Sum_probs=92.2

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCCHHHHHHHH--HHHHHhcCHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRA--MAYLKLRRFQEAE  137 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~~la--~~~~~~g~~~eA~  137 (372)
                      ..||-..|...-.++-++-..+.+...+...+..-.-.|+|++|...|+--+. +|....+--+|  .--..+|..+-|+
T Consensus        96 gAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr  174 (531)
T COG3898          96 GAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAAR  174 (531)
T ss_pred             ccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHH
Confidence            55777778777777664443445666677778888999999999999987664 67633333333  3445789999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 017383          138 DDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALR  179 (372)
Q Consensus       138 ~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~  179 (372)
                      .+.++|-...|.-.-++...-..+...|+++.|+...+....
T Consensus       175 ~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~  216 (531)
T COG3898         175 HYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRA  216 (531)
T ss_pred             HHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence            999999999999988888887889999999999998876553

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=93.95  E-value=0.24  Score=38.02  Aligned_cols=52  Identities=25%  Similarity=0.339  Sum_probs=26.5

Q ss_pred             HHhhcHHHHHHHHHHHHccCCC----------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 017383           95 FKQKKFKEAIDCYSRSIALSPT----------AVAYANRAMAYLKLRRFQEAEDDCTEALNL  146 (372)
Q Consensus        95 ~~~g~~~~Ai~~y~~al~~~p~----------~~~~~~la~~~~~~g~~~eA~~~~~~Al~l  146 (372)
                      .+.|+|..|++.+.+.+.....          ..++.++|.++...|++++|+..+++|+++
T Consensus         9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~   70 (94)
T PF12862_consen    9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL   70 (94)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            4556666665555555543211          233444555555555555555555555544

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=93.94  E-value=3.8  Score=40.43  Aligned_cols=133  Identities=13%  Similarity=0.078  Sum_probs=88.6

Q ss_pred             chhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHH--HHHHHcc---------CCC----HHHHHHH--HHH
Q 017383           64 NYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDC--YSRSIAL---------SPT----AVAYANR--AMA  126 (372)
Q Consensus        64 ~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~--y~~al~~---------~p~----~~~~~~l--a~~  126 (372)
                      -+.|+..+..+++..+.+....    --...+-...|.+|+..  +.+.+.+         .|-    ...-+.+  |.-
T Consensus       396 dekalnLLk~il~ft~yD~ec~----n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEy  471 (549)
T PF07079_consen  396 DEKALNLLKLILQFTNYDIECE----NIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEY  471 (549)
T ss_pred             cHHHHHHHHHHHHhccccHHHH----HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHH
Confidence            5678888888888776643221    12233444555555432  2233222         221    3333333  445


Q ss_pred             HHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHh
Q 017383          127 YLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQ  204 (372)
Q Consensus       127 ~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~~~~~~~~  204 (372)
                      ++..|+|.++.-+..-..+.+| .+.+|..+|.++....+|++|..++..   +-|++.-.....++|...+.+-+.+
T Consensus       472 Lysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~---LP~n~~~~dskvqKAl~lCqKh~~k  545 (549)
T PF07079_consen  472 LYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK---LPPNERMRDSKVQKALALCQKHLPK  545 (549)
T ss_pred             HHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh---CCCchhhHHHHHHHHHHHHHHhhhh
Confidence            6788999999999999999999 899999999999999999999999864   4454333345677777777765544

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=93.68  E-value=0.46  Score=43.63  Aligned_cols=73  Identities=18%  Similarity=0.206  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 017383           87 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRAT  159 (372)
Q Consensus        87 ~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~  159 (372)
                      ..++=..+...++++.|..+-.+.+.++|. +.-+.-+|.+|.++|-+..|+.+++..++.-|+.+.+-.-++.
T Consensus       184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~  257 (269)
T COG2912         184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ  257 (269)
T ss_pred             HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence            345566788999999999999999999998 8889999999999999999999999999999999877655443

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=93.53  E-value=0.22  Score=46.45  Aligned_cols=91  Identities=15%  Similarity=0.115  Sum_probs=72.4

Q ss_pred             HHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHccCCCcH
Q 017383          108 SRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSR-RATARKELGKLKESIEDSEFALRLEPQNQ  185 (372)
Q Consensus       108 ~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~-lg~~~~~lg~~~~A~~~~~~al~l~P~~~  185 (372)
                      .++-...|+ +..|...+.-..+.|-|.+--..|..++..+|.+++.|.. .+.-+...++++.+...|.++|+++|.++
T Consensus        97 ~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p  176 (435)
T COG5191          97 YRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSP  176 (435)
T ss_pred             ehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCc
Confidence            333333454 7777777777777888899999999999999999999987 55678889999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 017383          186 EIKKQLAEVKSLY  198 (372)
Q Consensus       186 ~~~~~l~~a~~~~  198 (372)
                      .+|-.+-+..-.|
T Consensus       177 ~iw~eyfr~El~y  189 (435)
T COG5191         177 RIWIEYFRMELMY  189 (435)
T ss_pred             hHHHHHHHHHHHH
Confidence            9886555544433

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=92.98  E-value=1.8  Score=40.22  Aligned_cols=95  Identities=18%  Similarity=0.176  Sum_probs=71.3

Q ss_pred             HHHhhcHHHHHHHHHHHHcc----CCC-----HHHHHHHHHHHHHhc-CHHHHHHHHHHHHhc----CCC---C------
Q 017383           94 CFKQKKFKEAIDCYSRSIAL----SPT-----AVAYANRAMAYLKLR-RFQEAEDDCTEALNL----DDR---Y------  150 (372)
Q Consensus        94 ~~~~g~~~~Ai~~y~~al~~----~p~-----~~~~~~la~~~~~~g-~~~eA~~~~~~Al~l----~p~---~------  150 (372)
                      ..++|+++.|..+|.++-.+    +|+     +..+++.|...+..+ ++++|..++++|+.+    ...   .      
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el   82 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL   82 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence            36789999999999998664    354     788999999999999 999999999999887    221   1      


Q ss_pred             -HHHHHHHHHHHHHcCCHHH---HHHHHHHHHccCCCcHHHH
Q 017383          151 -IKAYSRRATARKELGKLKE---SIEDSEFALRLEPQNQEIK  188 (372)
Q Consensus       151 -~~a~~~lg~~~~~lg~~~~---A~~~~~~al~l~P~~~~~~  188 (372)
                       ..++..++.+|...+.++.   |....+.+-.-.|+.+...
T Consensus        83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~  124 (278)
T PF08631_consen   83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVF  124 (278)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHH
Confidence             4557778889988887654   4444444444556655553

It is also involved in sporulation [].

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=92.85  E-value=0.69  Score=44.70  Aligned_cols=93  Identities=17%  Similarity=0.167  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHHHccCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--------CCHHH
Q 017383           86 SEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD--------RYIKA  153 (372)
Q Consensus        86 ~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p--------~~~~a  153 (372)
                      ++..+|..|...|+++.|+.+|.++-....+    ...|.|+-.+-..+|+|..-..+-.+|..--.        -.++.
T Consensus       152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl  231 (466)
T KOG0686|consen  152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL  231 (466)
T ss_pred             HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence            4678999999999999999999998777665    77888888899999999998888888876520        11345


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Q 017383          154 YSRRATARKELGKLKESIEDSEFAL  178 (372)
Q Consensus       154 ~~~lg~~~~~lg~~~~A~~~~~~al  178 (372)
                      ...-|.+...+++|..|..+|-.+.
T Consensus       232 ~C~agLa~L~lkkyk~aa~~fL~~~  256 (466)
T KOG0686|consen  232 KCAAGLANLLLKKYKSAAKYFLLAE  256 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            6667888899999999999987664

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.68  E-value=6.1  Score=34.10  Aligned_cols=118  Identities=7%  Similarity=-0.018  Sum_probs=85.5

Q ss_pred             CCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-----HHHHHHHHHHHHHhcCHHHH
Q 017383           62 SRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-----AVAYANRAMAYLKLRRFQEA  136 (372)
Q Consensus        62 g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-----~~~~~~la~~~~~~g~~~eA  136 (372)
                      +..++|+.-|...-+..-...-..+....|.+....|+-..|+.+|..+-.-.|.     -.+...-|..+...|.|++-
T Consensus        72 ~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV  151 (221)
T COG4649          72 NKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDV  151 (221)
T ss_pred             CCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHH
Confidence            5666666666665555444334445667888999999999999999998876654     23445557778888999887


Q ss_pred             HHHHHHHH-hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 017383          137 EDDCTEAL-NLDDRYIKAYSRRATARKELGKLKESIEDSEFALR  179 (372)
Q Consensus       137 ~~~~~~Al-~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~  179 (372)
                      ..-.+..- .-+|--..+.--||.+-.+-|++..|...|.+...
T Consensus       152 ~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         152 SSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             HHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            65554422 22344456666799999999999999999999876

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=92.62  E-value=0.17  Score=31.86  Aligned_cols=29  Identities=28%  Similarity=0.331  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 017383          152 KAYSRRATARKELGKLKESIEDSEFALRL  180 (372)
Q Consensus       152 ~a~~~lg~~~~~lg~~~~A~~~~~~al~l  180 (372)
                      .+|..+|.+-...++|+.|+.+|+++|.+
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            35666777777777777777777777654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=92.57  E-value=0.21  Score=31.47  Aligned_cols=29  Identities=24%  Similarity=0.305  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 017383          118 VAYANRAMAYLKLRRFQEAEDDCTEALNL  146 (372)
Q Consensus       118 ~~~~~la~~~~~~g~~~eA~~~~~~Al~l  146 (372)
                      .+|..+|.+-+..++|++|+.+|.+++.+
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            45666777777777777777777777765

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=92.51  E-value=0.56  Score=35.96  Aligned_cols=58  Identities=21%  Similarity=0.263  Sum_probs=47.5

Q ss_pred             HHHHhcCHHHHHHHHHHHHhcCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 017383          126 AYLKLRRFQEAEDDCTEALNLDD---------RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQ  183 (372)
Q Consensus       126 ~~~~~g~~~eA~~~~~~Al~l~p---------~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~  183 (372)
                      -.++.|+|.+|++.+.+.+....         ....++.++|.++...|++++|+..+++++.+...
T Consensus         7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are   73 (94)
T PF12862_consen    7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE   73 (94)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            45688999999988888876532         12567888999999999999999999999988643

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.46  E-value=2.6  Score=41.79  Aligned_cols=123  Identities=15%  Similarity=0.044  Sum_probs=90.7

Q ss_pred             CCCCchhhHHHHHhhhhcCCC-CchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC--------HHHHHHHHHHHHHh
Q 017383           60 SYSRNYDPVSHISSSLMNEES-TPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT--------AVAYANRAMAYLKL  130 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~-~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~--------~~~~~~la~~~~~~  130 (372)
                      .-+-|+.|...|..+++.-.. +-.+.+..++|..|.+.|+-+.--+..+..-..+.+        +.+++..|.-.+..
T Consensus       379 sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~q  458 (629)
T KOG2300|consen  379 SVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQ  458 (629)
T ss_pred             hcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHh
Confidence            567899999999999886633 123444568899999988866544443332222211        67788899999999


Q ss_pred             cCHHHHHHHHHHHHhcCC-CC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 017383          131 RRFQEAEDDCTEALNLDD-RY-----IKAYSRRATARKELGKLKESIEDSEFALRLEP  182 (372)
Q Consensus       131 g~~~eA~~~~~~Al~l~p-~~-----~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P  182 (372)
                      |++.||.....+.+++.. .+     +-.+..+|.+...+|+..++....+-++.+..
T Consensus       459 n~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAk  516 (629)
T KOG2300|consen  459 NDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAK  516 (629)
T ss_pred             ccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHh
Confidence            999999999999998751 11     33456688899999999999999888887753

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=92.28  E-value=0.54  Score=43.33  Aligned_cols=61  Identities=20%  Similarity=0.108  Sum_probs=36.1

Q ss_pred             hHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccC-CCHHHHHHHHHHHHH
Q 017383           67 PVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALS-PTAVAYANRAMAYLK  129 (372)
Q Consensus        67 A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~-p~~~~~~~la~~~~~  129 (372)
                      |..+|.+|+.+.|.++.+  |+.+|.++...|+.=.|+-+|-+++... |...+..|+...+.+
T Consensus         1 A~~~Y~~A~~l~P~~G~p--~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNP--YNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHH--HHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCc--ccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            456666777777665555  5566666666666666776666666543 335566666665555

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=92.22  E-value=2.4  Score=38.83  Aligned_cols=105  Identities=15%  Similarity=0.194  Sum_probs=83.9

Q ss_pred             HHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH-HHH
Q 017383           95 FKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR-RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLK-ESI  171 (372)
Q Consensus        95 ~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g-~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~-~A~  171 (372)
                      .+...-..|+..-..+|.++|. -.+|.-|-.|+..++ +..+-+++++..+.-+|.+...|+.+-.+...+|+.. .-+
T Consensus        54 ~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rEL  133 (318)
T KOG0530|consen   54 AKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFREL  133 (318)
T ss_pred             hccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchH
Confidence            3444556677777888999997 666666666666555 6777889999999999999999999999999999988 778


Q ss_pred             HHHHHHHccCCCcHHHHHHHHHHHHHHH
Q 017383          172 EDSEFALRLEPQNQEIKKQLAEVKSLYE  199 (372)
Q Consensus       172 ~~~~~al~l~P~~~~~~~~l~~a~~~~~  199 (372)
                      ...+.++..+..|-.+|...+=+...|+
T Consensus       134 ef~~~~l~~DaKNYHaWshRqW~~r~F~  161 (318)
T KOG0530|consen  134 EFTKLMLDDDAKNYHAWSHRQWVLRFFK  161 (318)
T ss_pred             HHHHHHHhccccchhhhHHHHHHHHHHh
Confidence            8999999999999888766666655544

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=92.14  E-value=4.9  Score=38.29  Aligned_cols=117  Identities=9%  Similarity=0.012  Sum_probs=83.2

Q ss_pred             chhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHH---HHHHHHHHhcCHHHHHHH
Q 017383           64 NYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYA---NRAMAYLKLRRFQEAEDD  139 (372)
Q Consensus        64 ~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~---~la~~~~~~g~~~eA~~~  139 (372)
                      .+..+..|++||+.+|.+.....  .+-..+.+..+-+.....+++++..+|+ ..+|.   ..-...+..-.+......
T Consensus        47 ~E~klsilerAL~~np~~~~L~l--~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~  124 (321)
T PF08424_consen   47 AERKLSILERALKHNPDSERLLL--GYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDV  124 (321)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHH--HHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence            45668899999999997555533  3444556667888889999999999997 44443   222222233356677777


Q ss_pred             HHHHHhcC-----C-------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 017383          140 CTEALNLD-----D-------------RYIKAYSRRATARKELGKLKESIEDSEFALRLEP  182 (372)
Q Consensus       140 ~~~Al~l~-----p-------------~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P  182 (372)
                      |.++|..-     .             .....+.+++......|..+.|+..++..++++=
T Consensus       125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~  185 (321)
T PF08424_consen  125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF  185 (321)
T ss_pred             HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence            77776531     1             1145677888889999999999999999999874

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=92.01  E-value=1  Score=38.93  Aligned_cols=91  Identities=11%  Similarity=0.009  Sum_probs=68.2

Q ss_pred             CCCC-CCCCchhhHHHHHhhhhcCCCCc-hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-------HHHHHHHHHH
Q 017383           56 PSGN-SYSRNYDPVSHISSSLMNEESTP-DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------AVAYANRAMA  126 (372)
Q Consensus        56 ~~~y-~~g~~~~A~~~~~~al~~~p~~~-~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-------~~~~~~la~~  126 (372)
                      |..| ..||++.|+..|.++........ ....+..+-.+.+..|+|.....+..++-.+...       ..+-..-|..
T Consensus        43 ~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~  122 (177)
T PF10602_consen   43 ADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYEGLA  122 (177)
T ss_pred             HHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence            3445 78999999999999888764432 2334567777888899999999999998776432       3344456888


Q ss_pred             HHHhcCHHHHHHHHHHHHhc
Q 017383          127 YLKLRRFQEAEDDCTEALNL  146 (372)
Q Consensus       127 ~~~~g~~~eA~~~~~~Al~l  146 (372)
                      ++..++|.+|-..|-.++.-
T Consensus       123 ~l~~r~f~~AA~~fl~~~~t  142 (177)
T PF10602_consen  123 NLAQRDFKEAAELFLDSLST  142 (177)
T ss_pred             HHHhchHHHHHHHHHccCcC
Confidence            88999999998888776543

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=91.98  E-value=0.63  Score=42.86  Aligned_cols=61  Identities=16%  Similarity=0.082  Sum_probs=46.9

Q ss_pred             HHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 017383          103 AIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKE  163 (372)
Q Consensus       103 Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~  163 (372)
                      |..+|.+|+.+.|. ...|+.+|.++...|+.-.|+-+|-+++...--++.+..++...+..
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            67888888888888 88888888888888888888888888887665567778888777776

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=91.61  E-value=0.17  Score=47.89  Aligned_cols=114  Identities=14%  Similarity=0.049  Sum_probs=87.5

Q ss_pred             CCCCC-CCCCCchhhHHHHHhhhhcCC---CC------------c--hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCC
Q 017383           54 PSPSG-NSYSRNYDPVSHISSSLMNEE---ST------------P--DATSEKELGNECFKQKKFKEAIDCYSRSIALSP  115 (372)
Q Consensus        54 ~~~~~-y~~g~~~~A~~~~~~al~~~p---~~------------~--~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p  115 (372)
                      ..|+. |..++|..|...|.+++..-.   ..            .  ......+++.+-++.+.+..|+..-..++..++
T Consensus       227 ~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~  306 (372)
T KOG0546|consen  227 NIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDER  306 (372)
T ss_pred             ccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccccCh
Confidence            34433 477888888888888775221   00            0  011345677888899999999999999998777


Q ss_pred             C-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 017383          116 T-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKL  167 (372)
Q Consensus       116 ~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~  167 (372)
                      . ..+++.+++.+..+.++++|++++..+....|++......+..+.....++
T Consensus       307 s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~  359 (372)
T KOG0546|consen  307 SKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQY  359 (372)
T ss_pred             hhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHH
Confidence            7 899999999999999999999999999999999987766666555554443

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=91.46  E-value=2.3  Score=39.54  Aligned_cols=103  Identities=19%  Similarity=0.139  Sum_probs=73.0

Q ss_pred             HHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCH--HHHHH-HH--HHH
Q 017383           88 KELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYI--KAYSR-RA--TAR  161 (372)
Q Consensus        88 ~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~--~a~~~-lg--~~~  161 (372)
                      ...|......|++.+|...|..++..+|. ..+...++.||+..|+.+.|...+..    .|...  +.+.. .+  ..+
T Consensus       138 ~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~----lP~~~~~~~~~~l~a~i~ll  213 (304)
T COG3118         138 LAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA----LPLQAQDKAAHGLQAQIELL  213 (304)
T ss_pred             HHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh----CcccchhhHHHHHHHHHHHH
Confidence            36677889999999999999999999998 89999999999999999998777655    33321  22222 11  222


Q ss_pred             HHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHH
Q 017383          162 KELGKLKESIEDSEFALRLEPQNQEIKKQLAEVK  195 (372)
Q Consensus       162 ~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~  195 (372)
                      .......+ ...+++.+..+|++.++...+....
T Consensus       214 ~qaa~~~~-~~~l~~~~aadPdd~~aa~~lA~~~  246 (304)
T COG3118         214 EQAAATPE-IQDLQRRLAADPDDVEAALALADQL  246 (304)
T ss_pred             HHHhcCCC-HHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            23222222 2467778889999988765555443

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=91.13  E-value=2.9  Score=34.98  Aligned_cols=86  Identities=12%  Similarity=-0.110  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHH
Q 017383          119 AYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLY  198 (372)
Q Consensus       119 ~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~~  198 (372)
                      .+.....+-+..+++.++...+...--+.|+.+..-..-|.++...|++.+|+..|+.+..-.+..+-....+.-+....
T Consensus        12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al   91 (153)
T TIGR02561        12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAK   91 (153)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhc
Confidence            34444444555667777777766666677777777777777777777777777777777766666666666666665555


Q ss_pred             HHHHHh
Q 017383          199 EKEVFQ  204 (372)
Q Consensus       199 ~~~~~~  204 (372)
                      +..-|.
T Consensus        92 ~Dp~Wr   97 (153)
T TIGR02561        92 GDAEWH   97 (153)
T ss_pred             CChHHH
Confidence            544443

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=90.90  E-value=2  Score=42.67  Aligned_cols=88  Identities=13%  Similarity=0.058  Sum_probs=73.0

Q ss_pred             hhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcC-HHHHHHHHHHH
Q 017383           66 DPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRR-FQEAEDDCTEA  143 (372)
Q Consensus        66 ~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~-~~eA~~~~~~A  143 (372)
                      .-...|+.++...+.+...  |......+-+.+.|.+--..|.+++...|+ +++|..-|.-.+..+. .+.|...+.++
T Consensus        89 rIv~lyr~at~rf~~D~~l--W~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrg  166 (568)
T KOG2396|consen   89 RIVFLYRRATNRFNGDVKL--WLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRG  166 (568)
T ss_pred             HHHHHHHHHHHhcCCCHHH--HHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHH
Confidence            3467889999888774444  557777677777799999999999999999 9999988888888776 99999999999


Q ss_pred             HhcCCCCHHHHH
Q 017383          144 LNLDDRYIKAYS  155 (372)
Q Consensus       144 l~l~p~~~~a~~  155 (372)
                      |+.+|+.+..|.
T Consensus       167 LR~npdsp~Lw~  178 (568)
T KOG2396|consen  167 LRFNPDSPKLWK  178 (568)
T ss_pred             hhcCCCChHHHH
Confidence            999999987653

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=90.35  E-value=0.88  Score=28.26  Aligned_cols=29  Identities=24%  Similarity=0.142  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHH--HHHHHccCC
Q 017383          154 YSRRATARKELGKLKESIED--SEFALRLEP  182 (372)
Q Consensus       154 ~~~lg~~~~~lg~~~~A~~~--~~~al~l~P  182 (372)
                      ++.+|-.+...|++++|+..  |+-+..+++
T Consensus         4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~   34 (36)
T PF07720_consen    4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDK   34 (36)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence            44455555555555555555  224444444

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=90.32  E-value=13  Score=38.73  Aligned_cols=121  Identities=12%  Similarity=0.063  Sum_probs=86.9

Q ss_pred             hhHHHHHhhhhcCCCC--chHHHHHHHHHHHH-HhhcHHHHHHHHHHHHccCC--C-----HHHHHHHHHHHHHhcCHHH
Q 017383           66 DPVSHISSSLMNEEST--PDATSEKELGNECF-KQKKFKEAIDCYSRSIALSP--T-----AVAYANRAMAYLKLRRFQE  135 (372)
Q Consensus        66 ~A~~~~~~al~~~p~~--~~a~~~~~~g~~~~-~~g~~~~Ai~~y~~al~~~p--~-----~~~~~~la~~~~~~g~~~e  135 (372)
                      .|+.+++-+++..+-.  .++.+...+|.+++ ...+++.|..++++++.+..  +     ..+.+-++.++.+.+... 
T Consensus        39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-  117 (608)
T PF10345_consen   39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-  117 (608)
T ss_pred             HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence            4677877777422222  36778889999987 67899999999999988773  3     344556788888888777 


Q ss_pred             HHHHHHHHHhcCCC----CHHHHHHHH--HHHHHcCCHHHHHHHHHHHHccC--CCcHHH
Q 017383          136 AEDDCTEALNLDDR----YIKAYSRRA--TARKELGKLKESIEDSEFALRLE--PQNQEI  187 (372)
Q Consensus       136 A~~~~~~Al~l~p~----~~~a~~~lg--~~~~~lg~~~~A~~~~~~al~l~--P~~~~~  187 (372)
                      |...++++++..-+    .....+++-  ..+...+++..|+..++....+.  .+++.+
T Consensus       118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~  177 (608)
T PF10345_consen  118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV  177 (608)
T ss_pred             HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH
Confidence            99999999987655    233333332  22223379999999999998877  466555

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=90.07  E-value=2.5  Score=45.99  Aligned_cols=124  Identities=14%  Similarity=0.149  Sum_probs=88.9

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchH-HHHHHHHHHHHHh-------hcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHh
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDA-TSEKELGNECFKQ-------KKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKL  130 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a-~~~~~~g~~~~~~-------g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~  130 (372)
                      .-..|++|+..|++.-..-|.-.+. .+.+..|..+..+       ..+.+|+..|++.-. .|. +.-|...|.+|..+
T Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  565 (932)
T PRK13184        487 AEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGKALVYQRL  565 (932)
T ss_pred             hhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhHHHHHHHh
Confidence            5678999999999999888875443 2355777666532       368889888888543 344 77799999999999


Q ss_pred             cCHHHHHHHHHHHHhcCCCCHHHHH-------HHHHHHHHcCCHHHHHHHHHHHHccCCCcHH
Q 017383          131 RRFQEAEDDCTEALNLDDRYIKAYS-------RRATARKELGKLKESIEDSEFALRLEPQNQE  186 (372)
Q Consensus       131 g~~~eA~~~~~~Al~l~p~~~~a~~-------~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~  186 (372)
                      |+|++-++++.-|++..|.++..-.       ++-.+.+.  +...|....--++.+.|....
T Consensus       566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  626 (932)
T PRK13184        566 GEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYK--HRREALVFMLLALWIAPEKIS  626 (932)
T ss_pred             hhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCccccc
Confidence            9999999999999999999865433       33322222  223455556666777776543

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=90.00  E-value=4  Score=34.12  Aligned_cols=81  Identities=12%  Similarity=-0.041  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 017383           87 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG  165 (372)
Q Consensus        87 ~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg  165 (372)
                      +.....+-...++.+++...+...--+.|+ +.+-..-|..+...|+|.+|+..++....-.+..+.+.-.++.|++.+|
T Consensus        13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~   92 (153)
T TIGR02561        13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG   92 (153)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC
Confidence            445555566789999999988888888899 7777788999999999999999999999988888888888999999999


Q ss_pred             CH
Q 017383          166 KL  167 (372)
Q Consensus       166 ~~  167 (372)
                      +.
T Consensus        93 Dp   94 (153)
T TIGR02561        93 DA   94 (153)
T ss_pred             Ch
Confidence            84

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=89.94  E-value=0.43  Score=27.09  Aligned_cols=16  Identities=38%  Similarity=0.169  Sum_probs=6.1

Q ss_pred             HHHHHHHHhcCHHHHH
Q 017383          122 NRAMAYLKLRRFQEAE  137 (372)
Q Consensus       122 ~la~~~~~~g~~~eA~  137 (372)
                      ++|.++..+|++++|+
T Consensus         6 ~la~~~~~~G~~~eA~   21 (26)
T PF07721_consen    6 ALARALLAQGDPDEAE   21 (26)
T ss_pred             HHHHHHHHcCCHHHHH
Confidence            3333333333333333

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=89.92  E-value=7.9  Score=41.23  Aligned_cols=114  Identities=21%  Similarity=0.043  Sum_probs=87.9

Q ss_pred             HHHHHHHHHhhcHHHHHHHHHHHHccCCC----------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC-----HH
Q 017383           88 KELGNECFKQKKFKEAIDCYSRSIALSPT----------AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY-----IK  152 (372)
Q Consensus        88 ~~~g~~~~~~g~~~~Ai~~y~~al~~~p~----------~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~-----~~  152 (372)
                      ...+.......+|.+|..+..++...-+.          +....-+|.+....|++++|++.++.++..-|.+     ..
T Consensus       419 ll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~  498 (894)
T COG2909         419 LLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIV  498 (894)
T ss_pred             HHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhh
Confidence            35577778899999998888887664321          4566778999999999999999999999987654     56


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHcc----CCCcHHHHHHHHHHHHHHHHH
Q 017383          153 AYSRRATARKELGKLKESIEDSEFALRL----EPQNQEIKKQLAEVKSLYEKE  201 (372)
Q Consensus       153 a~~~lg~~~~~lg~~~~A~~~~~~al~l----~P~~~~~~~~l~~a~~~~~~~  201 (372)
                      ++...|.+..-.|++++|..+...+.++    +--+-.++..+.++.-...++
T Consensus       499 ~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qG  551 (894)
T COG2909         499 ALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQG  551 (894)
T ss_pred             hhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhh
Confidence            7888999999999999999999999887    333344555555555554444

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=89.90  E-value=0.77  Score=44.61  Aligned_cols=89  Identities=19%  Similarity=0.163  Sum_probs=68.9

Q ss_pred             CCCCCCCchhhHHHHHhhhhcCCC--------Cch--------HHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHH
Q 017383           57 SGNSYSRNYDPVSHISSSLMNEES--------TPD--------ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVA  119 (372)
Q Consensus        57 ~~y~~g~~~~A~~~~~~al~~~p~--------~~~--------a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~  119 (372)
                      ..|.+++|..|..-|..+|++..+        .+.        ....-.+..||.+.++-+-|+.+-.++|-++|. ..-
T Consensus       185 ~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~frn  264 (569)
T PF15015_consen  185 SCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRN  264 (569)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhH
Confidence            346677777777777777664322        111        123446788999999999999999999999998 888


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHh
Q 017383          120 YANRAMAYLKLRRFQEAEDDCTEALN  145 (372)
Q Consensus       120 ~~~la~~~~~~g~~~eA~~~~~~Al~  145 (372)
                      +...|.|+..+.+|.+|-..+.-|.-
T Consensus       265 HLrqAavfR~LeRy~eAarSamia~y  290 (569)
T PF15015_consen  265 HLRQAAVFRRLERYSEAARSAMIADY  290 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88999999999999999887777654

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=89.90  E-value=7.8  Score=36.89  Aligned_cols=114  Identities=11%  Similarity=0.030  Sum_probs=79.4

Q ss_pred             HHHHHhhhhcCCCCchHHHHHHHHHH---HHH---------hhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHH
Q 017383           68 VSHISSSLMNEESTPDATSEKELGNE---CFK---------QKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQ  134 (372)
Q Consensus        68 ~~~~~~al~~~p~~~~a~~~~~~g~~---~~~---------~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~  134 (372)
                      ...|++.++.+|.+.+++.  .+...   +..         ..-.+..+..|++||+.+|+ ..++..+=.+..+..+.+
T Consensus         5 ~~el~~~v~~~P~di~~Wl--~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~   82 (321)
T PF08424_consen    5 TAELNRRVRENPHDIEAWL--ELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSE   82 (321)
T ss_pred             HHHHHHHHHhCcccHHHHH--HHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHH
Confidence            4568889999999766643  43322   221         12256778899999999988 666555555666777888


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHH---HHcCCHHHHHHHHHHHHccCCC
Q 017383          135 EAEDDCTEALNLDDRYIKAYSRRATAR---KELGKLKESIEDSEFALRLEPQ  183 (372)
Q Consensus       135 eA~~~~~~Al~l~p~~~~a~~~lg~~~---~~lg~~~~A~~~~~~al~l~P~  183 (372)
                      +...-+++++..+|++...|..+-...   ...-.+......|.++|..-..
T Consensus        83 ~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~  134 (321)
T PF08424_consen   83 KLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSR  134 (321)
T ss_pred             HHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHH
Confidence            888899999999999887775543322   2334678888888888876554

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=89.89  E-value=10  Score=36.88  Aligned_cols=130  Identities=16%  Similarity=0.110  Sum_probs=93.2

Q ss_pred             hhHHHHHhhhhcCCCCchHHHHHHHHH----------HHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcC--
Q 017383           66 DPVSHISSSLMNEESTPDATSEKELGN----------ECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRR--  132 (372)
Q Consensus        66 ~A~~~~~~al~~~p~~~~a~~~~~~g~----------~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~--  132 (372)
                      +++..=.+.+..+|+...++.+.....          -..+..-+++-+.+...+|..+|+ ..+|+.|..++.+.+.  
T Consensus        47 e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~  126 (421)
T KOG0529|consen   47 EHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSD  126 (421)
T ss_pred             HHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCch
Confidence            466777777888887544443222221          122334567788899999999999 8999999999988774  


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC----HHHHHHHHHHHHccCCCcHHHHHHHHHHH
Q 017383          133 FQEAEDDCTEALNLDDRYIKAYSRRATARKELGK----LKESIEDSEFALRLEPQNQEIKKQLAEVK  195 (372)
Q Consensus       133 ~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~----~~~A~~~~~~al~l~P~~~~~~~~l~~a~  195 (372)
                      +..=+..|+++++.||.+..+|..+-.+......    ..+=+++..+++.-++.|-.+|.....+.
T Consensus       127 ~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL  193 (421)
T KOG0529|consen  127 WNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLL  193 (421)
T ss_pred             HHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHH
Confidence            6888999999999999998888776554443332    45667788888888888887775544443

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=89.79  E-value=4.8  Score=39.01  Aligned_cols=124  Identities=13%  Similarity=-0.045  Sum_probs=90.3

Q ss_pred             CCCCchhhHHHHHhhhh---------c-----CCCCc-------------hHHHHHHHHHHHHHhhcHHHHHHHHHHHHc
Q 017383           60 SYSRNYDPVSHISSSLM---------N-----EESTP-------------DATSEKELGNECFKQKKFKEAIDCYSRSIA  112 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~---------~-----~p~~~-------------~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~  112 (372)
                      .+|++..|.+++++||-         .     +....             -..+++.....+.+.|-|.-|+++..-.+.
T Consensus        52 ~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLls  131 (360)
T PF04910_consen   52 QQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLS  131 (360)
T ss_pred             HcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence            56888888888887763         1     11111             112345566777889999999999999999


Q ss_pred             cCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-----CCHHHHHHHHHHHHHcCCH---------------HH
Q 017383          113 LSPT---AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD-----RYIKAYSRRATARKELGKL---------------KE  169 (372)
Q Consensus       113 ~~p~---~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p-----~~~~a~~~lg~~~~~lg~~---------------~~  169 (372)
                      +||.   ..+++.+-...++.++|+--+..++.......     ..+...+.++.++..+++-               +.
T Consensus       132 Ldp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~  211 (360)
T PF04910_consen  132 LDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSES  211 (360)
T ss_pred             cCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhH
Confidence            9997   45566666677788888877877777655211     1235667888999999998               88


Q ss_pred             HHHHHHHHHccCCC
Q 017383          170 SIEDSEFALRLEPQ  183 (372)
Q Consensus       170 A~~~~~~al~l~P~  183 (372)
                      |...+.+|+...|.
T Consensus       212 A~~~L~~Ai~~fP~  225 (360)
T PF04910_consen  212 ADEALQKAILRFPW  225 (360)
T ss_pred             HHHHHHHHHHHhHH
Confidence            99999999888874

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=89.70  E-value=5.6  Score=40.93  Aligned_cols=111  Identities=14%  Similarity=0.050  Sum_probs=82.8

Q ss_pred             CchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhh---cHHHHHHHHHHHHccCCCHHHHHHHHHHHHHh----cCHHH
Q 017383           63 RNYDPVSHISSSLMNEESTPDATSEKELGNECFKQK---KFKEAIDCYSRSIALSPTAVAYANRAMAYLKL----RRFQE  135 (372)
Q Consensus        63 ~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g---~~~~Ai~~y~~al~~~p~~~~~~~la~~~~~~----g~~~e  135 (372)
                      ++..|+.+|.++-.....  ++  .+.+|.++....   ++..|..+|..|.... ...+++++|.||..=    .+...
T Consensus       308 d~~~A~~~~~~aA~~g~~--~a--~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G-~~~A~~~la~~y~~G~gv~r~~~~  382 (552)
T KOG1550|consen  308 DYEKALKLYTKAAELGNP--DA--QYLLGVLYETGTKERDYRRAFEYYSLAAKAG-HILAIYRLALCYELGLGVERNLEL  382 (552)
T ss_pred             cHHHHHHHHHHHHhcCCc--hH--HHHHHHHHHcCCccccHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhCCCcCCCHHH
Confidence            778899999999988733  55  558898887655   7889999999997532 277888888888643    47899


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHcc
Q 017383          136 AEDDCTEALNLDDRYIKAYSRRATARKEL-GKLKESIEDSEFALRL  180 (372)
Q Consensus       136 A~~~~~~Al~l~p~~~~a~~~lg~~~~~l-g~~~~A~~~~~~al~l  180 (372)
                      |..++.+|...+  .+.+.+.++..+... +.++.+...+...-.+
T Consensus       383 A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~  426 (552)
T KOG1550|consen  383 AFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAEL  426 (552)
T ss_pred             HHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHh
Confidence            999999999988  667777777655443 6776666655544443

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=89.66  E-value=2  Score=40.00  Aligned_cols=80  Identities=19%  Similarity=0.088  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHHHccCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 017383          100 FKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALR  179 (372)
Q Consensus       100 ~~~Ai~~y~~al~~~p~~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~  179 (372)
                      |..-+...+++++.. ...++..++..+...|+++.++..+++.+.++|-+-.+|..+-.+|...|+...|+..|++.-.
T Consensus       137 f~~WV~~~R~~l~e~-~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~  215 (280)
T COG3629         137 FDEWVLEQRRALEEL-FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK  215 (280)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence            555555555544311 1567888999999999999999999999999999999999999999999999999999988766


Q ss_pred             c
Q 017383          180 L  180 (372)
Q Consensus       180 l  180 (372)
                      +
T Consensus       216 ~  216 (280)
T COG3629         216 T  216 (280)
T ss_pred             H
Confidence            4

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=89.65  E-value=1.7  Score=45.12  Aligned_cols=114  Identities=16%  Similarity=0.036  Sum_probs=78.2

Q ss_pred             CCCCCC-CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHhcC
Q 017383           54 PSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRR  132 (372)
Q Consensus        54 ~~~~~y-~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~~la~~~~~~g~  132 (372)
                      .+.+.| +.|+|+.|.++|.++-..          +..-..|-+.|+|.+|...-.++..-......|...+.-+-..|+
T Consensus       770 ~iadhyan~~dfe~ae~lf~e~~~~----------~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgk  839 (1636)
T KOG3616|consen  770 EIADHYANKGDFEIAEELFTEADLF----------KDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGK  839 (1636)
T ss_pred             HHHHHhccchhHHHHHHHHHhcchh----------HHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcc
Confidence            344456 679999999988776332          233456778999999988877765322226777777877888888


Q ss_pred             HHHHHHHHH------HHHhcC-----------------CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 017383          133 FQEAEDDCT------EALNLD-----------------DRY-IKAYSRRATARKELGKLKESIEDSEFA  177 (372)
Q Consensus       133 ~~eA~~~~~------~Al~l~-----------------p~~-~~a~~~lg~~~~~lg~~~~A~~~~~~a  177 (372)
                      |.+|+..|-      +|+++.                 |++ ...+.++|.-+...|++.+|...|-++
T Consensus       840 f~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea  908 (1636)
T KOG3616|consen  840 FAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEA  908 (1636)
T ss_pred             hhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence            877766542      233321                 221 456677888999999999998887665

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=89.24  E-value=4  Score=39.61  Aligned_cols=50  Identities=10%  Similarity=0.100  Sum_probs=27.6

Q ss_pred             CCchhhHHHHHhhhhcC-CCC---------chHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q 017383           62 SRNYDPVSHISSSLMNE-EST---------PDATSEKELGNECFKQKKFKEAIDCYSRSI  111 (372)
Q Consensus        62 g~~~~A~~~~~~al~~~-p~~---------~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al  111 (372)
                      ..|.++...|..++... |+.         .....+..++.++..+|+++.|.+..++||
T Consensus         8 ~~Y~~~q~~F~~~v~~~Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRAL   67 (360)
T PF04910_consen    8 KAYQEAQEQFYAAVQSHDPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERAL   67 (360)
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34556666666665432 110         022235566677777777766666666665

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=89.15  E-value=1.3  Score=27.51  Aligned_cols=29  Identities=17%  Similarity=0.126  Sum_probs=13.3

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHH--HHHhcCC
Q 017383          120 YANRAMAYLKLRRFQEAEDDCT--EALNLDD  148 (372)
Q Consensus       120 ~~~la~~~~~~g~~~eA~~~~~--~Al~l~p  148 (372)
                      ++.+|..+...|++++|+..++  -+..+++
T Consensus         4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~   34 (36)
T PF07720_consen    4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDK   34 (36)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence            3444555555555555555522  4444443

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=89.07  E-value=6.5  Score=38.26  Aligned_cols=126  Identities=14%  Similarity=0.076  Sum_probs=91.6

Q ss_pred             CchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhh--cHHHHHHHHHHHHccCCC-HHHHHHHHH-HHHHhc---CHHH
Q 017383           63 RNYDPVSHISSSLMNEESTPDATSEKELGNECFKQK--KFKEAIDCYSRSIALSPT-AVAYANRAM-AYLKLR---RFQE  135 (372)
Q Consensus        63 ~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g--~~~~Ai~~y~~al~~~p~-~~~~~~la~-~~~~~g---~~~e  135 (372)
                      -+++-+.+...+|+.+|+...  +|+.+..++.+.+  ++..=+...+++++.||. ..+|..|=. +-....   ...+
T Consensus        90 ~ld~eL~~~~~~L~~npksY~--aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~  167 (421)
T KOG0529|consen   90 LLDEELKYVESALKVNPKSYG--AWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKE  167 (421)
T ss_pred             hhHHHHHHHHHHHHhCchhHH--HHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchh
Confidence            456667888999999999444  4777888887665  478889999999999997 444322222 222222   3677


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHH------cCC------HHHHHHHHHHHHccCCCcHHHHHH
Q 017383          136 AEDDCTEALNLDDRYIKAYSRRATARKE------LGK------LKESIEDSEFALRLEPQNQEIKKQ  190 (372)
Q Consensus       136 A~~~~~~Al~l~p~~~~a~~~lg~~~~~------lg~------~~~A~~~~~~al~l~P~~~~~~~~  190 (372)
                      =+++++++|.-++.+..+|+.+..++..      .|+      ...-++.-..|+-.+|++..+|..
T Consensus       168 El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY  234 (421)
T KOG0529|consen  168 ELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFY  234 (421)
T ss_pred             HHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeee
Confidence            7899999999999999999999987773      231      345566777778888888877643

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=88.84  E-value=0.57  Score=26.56  Aligned_cols=24  Identities=21%  Similarity=-0.010  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHH
Q 017383          152 KAYSRRATARKELGKLKESIEDSE  175 (372)
Q Consensus       152 ~a~~~lg~~~~~lg~~~~A~~~~~  175 (372)
                      .+.+.+|.++...|++++|...++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            467899999999999999998875

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=88.60  E-value=3.8  Score=43.34  Aligned_cols=63  Identities=17%  Similarity=0.083  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHH----------HhcCCC----------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 017383          117 AVAYANRAMAYLKLRRFQEAEDDCTEA----------LNLDDR----------YIKAYSRRATARKELGKLKESIEDSEF  176 (372)
Q Consensus       117 ~~~~~~la~~~~~~g~~~eA~~~~~~A----------l~l~p~----------~~~a~~~lg~~~~~lg~~~~A~~~~~~  176 (372)
                      -..|++.|.-+...++.+.|+++|+++          |.-+|.          +...|.--|..+...|+++.|+..|..
T Consensus       858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~  937 (1416)
T KOG3617|consen  858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS  937 (1416)
T ss_pred             hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence            567888888888888888899888875          233443          234455567778888999999988887


Q ss_pred             HHc
Q 017383          177 ALR  179 (372)
Q Consensus       177 al~  179 (372)
                      |-.
T Consensus       938 A~D  940 (1416)
T KOG3617|consen  938 AKD  940 (1416)
T ss_pred             hhh
Confidence            754

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=88.40  E-value=7.1  Score=28.64  Aligned_cols=31  Identities=10%  Similarity=0.005  Sum_probs=16.6

Q ss_pred             HHHHHHHHHccCCCcHHHHHHHHHHHHHHHH
Q 017383          170 SIEDSEFALRLEPQNQEIKKQLAEVKSLYEK  200 (372)
Q Consensus       170 A~~~~~~al~l~P~~~~~~~~l~~a~~~~~~  200 (372)
                      |++.+.+++...|+++........+.....+
T Consensus        32 aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~R   62 (75)
T cd02682          32 AIEVLSQIVKNYPDSPTRLIYEQMINEYKRR   62 (75)
T ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence            4445556666667766544444444444444

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=88.38  E-value=3  Score=43.20  Aligned_cols=80  Identities=16%  Similarity=0.113  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 017383           86 SEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG  165 (372)
Q Consensus        86 ~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg  165 (372)
                      ++.++|..+.....|++|.++|..+-..       .+...|++.+..|++-+...    .--|++.+.+-.+|..+...|
T Consensus       798 A~r~ig~~fa~~~~We~A~~yY~~~~~~-------e~~~ecly~le~f~~LE~la----~~Lpe~s~llp~~a~mf~svG  866 (1189)
T KOG2041|consen  798 AFRNIGETFAEMMEWEEAAKYYSYCGDT-------ENQIECLYRLELFGELEVLA----RTLPEDSELLPVMADMFTSVG  866 (1189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccch-------HhHHHHHHHHHhhhhHHHHH----HhcCcccchHHHHHHHHHhhc
Confidence            4566777777777777777777665322       34455666666665533332    223777777777888888888


Q ss_pred             CHHHHHHHHHH
Q 017383          166 KLKESIEDSEF  176 (372)
Q Consensus       166 ~~~~A~~~~~~  176 (372)
                      ..++|...|-+
T Consensus       867 MC~qAV~a~Lr  877 (1189)
T KOG2041|consen  867 MCDQAVEAYLR  877 (1189)
T ss_pred             hHHHHHHHHHh
Confidence            88888887744

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.27  E-value=3  Score=42.72  Aligned_cols=71  Identities=14%  Similarity=0.011  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHH
Q 017383          119 AYANRAMAYLKLRRFQEAEDDCTEALNLDDRY------IKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKK  189 (372)
Q Consensus       119 ~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~------~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~  189 (372)
                      ++-|-|.-++++.+|..++++|...+..-|.+      ++....++.||..+.+.+.|.++++.|-+.+|.++-...
T Consensus       356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~  432 (872)
T KOG4814|consen  356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQL  432 (872)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHH
Confidence            34456778899999999999999999876654      677888999999999999999999999999998876543

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=87.90  E-value=6.8  Score=38.98  Aligned_cols=113  Identities=12%  Similarity=0.157  Sum_probs=87.9

Q ss_pred             HHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 017383           94 CFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIE  172 (372)
Q Consensus        94 ~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~  172 (372)
                      .+..|+.-.|-.....++...|. +..-.-++.++..+|.|+.|..++.-+=..-..-..+..-+-.....+|++++|..
T Consensus       299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s  378 (831)
T PRK15180        299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS  378 (831)
T ss_pred             HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence            46789999999999999998887 77777789999999999999998887766655556666666677889999999999


Q ss_pred             HHHHHHccCCCcHH----------HHHHHHHHHHHHHHHHHhhh
Q 017383          173 DSEFALRLEPQNQE----------IKKQLAEVKSLYEKEVFQKA  206 (372)
Q Consensus       173 ~~~~al~l~P~~~~----------~~~~l~~a~~~~~~~~~~~~  206 (372)
                      ..+-.|.-+-.+++          ..+.++++.-.+++.+...+
T Consensus       379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~  422 (831)
T PRK15180        379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNP  422 (831)
T ss_pred             HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCC
Confidence            88777755444444          45777888777777655543

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=87.71  E-value=2.1  Score=39.79  Aligned_cols=58  Identities=24%  Similarity=0.149  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 017383          119 AYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEF  176 (372)
Q Consensus       119 ~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~  176 (372)
                      .+...+..|...|.+.+|+..+++++.++|-+-..+..+-.++..+|+--+|...|++
T Consensus       281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyer  338 (361)
T COG3947         281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYER  338 (361)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence            3444567788888888888888888888888888888888888888887777666654

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=87.34  E-value=2.6  Score=41.48  Aligned_cols=52  Identities=17%  Similarity=0.261  Sum_probs=47.7

Q ss_pred             HHHHHHhhcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 017383           91 GNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTE  142 (372)
Q Consensus        91 g~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~~la~~~~~~g~~~eA~~~~~~  142 (372)
                      |..+|..|+|.++.-+-.=..+++|.+.+|.-+|.|++...+|.+|..++..
T Consensus       469 AEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~  520 (549)
T PF07079_consen  469 AEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQK  520 (549)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence            4557899999999999999999999999999999999999999999998865

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=87.25  E-value=2.9  Score=36.76  Aligned_cols=70  Identities=17%  Similarity=0.114  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHccCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHcCCHHHHH
Q 017383          100 FKEAIDCYSRSIALSPT---AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR----YIKAYSRRATARKELGKLKESI  171 (372)
Q Consensus       100 ~~~Ai~~y~~al~~~p~---~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~----~~~a~~~lg~~~~~lg~~~~A~  171 (372)
                      =+.|...|-++-. .|.   +...+.+|..|. ..+.++|+..+.+++++...    ++..+..|+.++..+|+++.|-
T Consensus       122 d~~A~~~fL~~E~-~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  122 DQEALRRFLQLEG-TPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             cHHHHHHHHHHcC-CCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            3456665555432 233   667777776554 56777888888888877543    3777788888888888887774

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=87.13  E-value=9  Score=37.30  Aligned_cols=100  Identities=12%  Similarity=0.043  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHHHcc-----CCC--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC----CCCHHHH
Q 017383           86 SEKELGNECFKQKKFKEAIDCYSRSIAL-----SPT--AVAYANRAMAYLKLRRFQEAEDDCTEALNLD----DRYIKAY  154 (372)
Q Consensus        86 ~~~~~g~~~~~~g~~~~Ai~~y~~al~~-----~p~--~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~----p~~~~a~  154 (372)
                      .|+.+..+|-..|+...-...+...+..     +..  +.+.+.+=.+|+.-+.|+.|.....++.--.    ...+..+
T Consensus       171 ~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~  250 (493)
T KOG2581|consen  171 LYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYL  250 (493)
T ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHH
Confidence            4566666777777766655555554443     222  5556667778999999999988877765221    1336667


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHccCCCcH
Q 017383          155 SRRATARKELGKLKESIEDSEFALRLEPQNQ  185 (372)
Q Consensus       155 ~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~  185 (372)
                      |.+|.+..-.++|..|..+|-+|++..|.+.
T Consensus       251 yY~GrIkaiqldYssA~~~~~qa~rkapq~~  281 (493)
T KOG2581|consen  251 YYLGRIKAIQLDYSSALEYFLQALRKAPQHA  281 (493)
T ss_pred             HHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence            8899999999999999999999999999854

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=86.68  E-value=5.8  Score=29.37  Aligned_cols=60  Identities=17%  Similarity=0.124  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHH---HHHHHcCCHHHHHHHHHHHHc
Q 017383          120 YANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRA---TARKELGKLKESIEDSEFALR  179 (372)
Q Consensus       120 ~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg---~~~~~lg~~~~A~~~~~~al~  179 (372)
                      ....|.=++..++..+|+..++++++..++....+..+|   .+|...|+|.+.+.+.-.-+.
T Consensus         9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~   71 (80)
T PF10579_consen    9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE   71 (80)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344566677889999999999999998887766555544   578888999888877554443

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=86.65  E-value=5.2  Score=37.99  Aligned_cols=127  Identities=15%  Similarity=0.101  Sum_probs=88.1

Q ss_pred             CCCCchhhHHHHHhhhhcCC-CCchHHHHHHHHHHHH-----HhhcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHhcCH
Q 017383           60 SYSRNYDPVSHISSSLMNEE-STPDATSEKELGNECF-----KQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRF  133 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p-~~~~a~~~~~~g~~~~-----~~g~~~~Ai~~y~~al~~~p~~~~~~~la~~~~~~g~~  133 (372)
                      +.+-.++++..+.+++...- ......+  .++.++.     ..-+|..-...|+-...+.|++.+-.|++.+..+..=.
T Consensus       268 ~r~lI~eg~all~rA~~~~~pGPYqlqA--AIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSPvV~LNRAVAla~~~Gp  345 (415)
T COG4941         268 DRALIDEGLALLDRALASRRPGPYQLQA--AIAALHARARRAEDTDWPAIDALYDALEQAAPSPVVTLNRAVALAMREGP  345 (415)
T ss_pred             hHHHHHHHHHHHHHHHHcCCCChHHHHH--HHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCCeEeehHHHHHHHhhhH
Confidence            33445667777777776552 2112211  2233332     24477777778888888888877888888888777767


Q ss_pred             HHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHH
Q 017383          134 QEAEDDCTEALNL--DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK  188 (372)
Q Consensus       134 ~eA~~~~~~Al~l--~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~  188 (372)
                      ..++...+....-  -..+...+.-+|..+..+|+.++|...|++++.+.++..+..
T Consensus       346 ~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~  402 (415)
T COG4941         346 AAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERA  402 (415)
T ss_pred             HhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHH
Confidence            7777776665543  234555667799999999999999999999999999877654

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=85.91  E-value=3.4  Score=37.75  Aligned_cols=61  Identities=18%  Similarity=0.151  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 017383          117 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR------YIKAYSRRATARKELGKLKESIEDSEFA  177 (372)
Q Consensus       117 ~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~------~~~a~~~lg~~~~~lg~~~~A~~~~~~a  177 (372)
                      ..+...+|.-|+..|+|++|+..++.+....-.      ....+..+..|...+|+.+..+...-+.
T Consensus       178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL  244 (247)
T PF11817_consen  178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL  244 (247)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            666666777777777777777777776544321      1344556666777777766666554443

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=85.88  E-value=6  Score=29.03  Aligned_cols=29  Identities=21%  Similarity=0.187  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHHHhhcHHHHHHHHHHHHc
Q 017383           84 ATSEKELGNECFKQKKFKEAIDCYSRSIA  112 (372)
Q Consensus        84 a~~~~~~g~~~~~~g~~~~Ai~~y~~al~  112 (372)
                      +..+...|..+-+.|+|.+|+.||+.+++
T Consensus         6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe   34 (75)
T cd02682           6 ARKYAINAVKAEKEGNAEDAITNYKKAIE   34 (75)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            33345667777777888888777666543

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=85.66  E-value=3.9  Score=39.71  Aligned_cols=177  Identities=18%  Similarity=0.113  Sum_probs=104.9

Q ss_pred             HHHHHHHHHHHHHhhhcCCCCCccccccccccCCCCCCCC-CCCCchhhHHHHHhhhhcCCCCch-HHHHHHHHHHHHHh
Q 017383           20 QDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPD-ATSEKELGNECFKQ   97 (372)
Q Consensus        20 ~~~e~~ik~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~~A~~~~~~al~~~p~~~~-a~~~~~~g~~~~~~   97 (372)
                      ..|...+.+.+.+++.-.-   +...+.-..+....|+.| ..|+++.|+..|.++-........ ...+.++-.+-.-.
T Consensus       124 ~~a~~~le~L~~eLk~yK~---n~iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~  200 (466)
T KOG0686|consen  124 KKAVLKLEKLDNELKSYKD---NLIKESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYM  200 (466)
T ss_pred             HHHHHHHHHHHHHHHHhhc---chhhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhh
Confidence            3455555566666655441   111111111113345556 689999999999997766644322 33455666677778


Q ss_pred             hcHHHHHHHHHHHHccC-------CC--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCCCHHHHHHHHH-
Q 017383           98 KKFKEAIDCYSRSIALS-------PT--AVAYANRAMAYLKLRRFQEAEDDCTEALNL--------DDRYIKAYSRRAT-  159 (372)
Q Consensus        98 g~~~~Ai~~y~~al~~~-------p~--~~~~~~la~~~~~~g~~~eA~~~~~~Al~l--------~p~~~~a~~~lg~-  159 (372)
                      |+|..-..+-.+|...-       +.  +.+...-|.+.+.+++|+.|..++-.+..-        .|.+..+|..+.. 
T Consensus       201 ~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcAL  280 (466)
T KOG0686|consen  201 GNWGHVLSYISKAESTPDANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCAL  280 (466)
T ss_pred             cchhhhhhHHHHHHhCchhhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhh
Confidence            99988888888777651       11  455566678888889999999988776432        3556666655532 


Q ss_pred             HHHHcCCH---HHHHHHHHHHHccCCCcHHHH-----HHHHHHHHHHH
Q 017383          160 ARKELGKL---KESIEDSEFALRLEPQNQEIK-----KQLAEVKSLYE  199 (372)
Q Consensus       160 ~~~~lg~~---~~A~~~~~~al~l~P~~~~~~-----~~l~~a~~~~~  199 (372)
                      +-+...++   -..-..|..-+++.|.-.++.     ..++.+...++
T Consensus       281 Atfdr~~Lk~~vi~n~~Fk~flel~Pqlr~il~~fy~sky~~cl~~L~  328 (466)
T KOG0686|consen  281 ATFDRQDLKLNVIKNESFKLFLELEPQLREILFKFYSSKYASCLELLR  328 (466)
T ss_pred             ccCCHHHHHHHHHcchhhhhHHhcChHHHHHHHHHhhhhHHHHHHHHH
Confidence            11111122   233456777888888766553     34444444443

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=85.66  E-value=5.8  Score=38.77  Aligned_cols=64  Identities=14%  Similarity=0.068  Sum_probs=44.9

Q ss_pred             hHHHHHHHHHHHHHhhcHHHHHHHHHHHHcc-CCC--HHHHHHHHHHHH--HhcCHHHHHHHHHHHHhc
Q 017383           83 DATSEKELGNECFKQKKFKEAIDCYSRSIAL-SPT--AVAYANRAMAYL--KLRRFQEAEDDCTEALNL  146 (372)
Q Consensus        83 ~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~-~p~--~~~~~~la~~~~--~~g~~~eA~~~~~~Al~l  146 (372)
                      .+......+..+++.++|..|...+...+.. .+.  ...+..++.+|.  ..-+|.+|.+.++..+..
T Consensus       130 ~~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~  198 (379)
T PF09670_consen  130 FGDREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR  198 (379)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            3344557777888899999999998888874 443  345666655554  445788888888887764

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=85.53  E-value=3.9  Score=40.11  Aligned_cols=95  Identities=22%  Similarity=0.242  Sum_probs=58.8

Q ss_pred             HHHHHHHHHhhcHHHHHHHHHHHHccC--------CC--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 017383           88 KELGNECFKQKKFKEAIDCYSRSIALS--------PT--AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRR  157 (372)
Q Consensus        88 ~~~g~~~~~~g~~~~Ai~~y~~al~~~--------p~--~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~l  157 (372)
                      ..+..++.-.|||..|+...+.. +++        |.  ..+++..|.||+.+++|.+|+..|...+-.--.....++..
T Consensus       126 igLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~~  204 (404)
T PF10255_consen  126 IGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQR  204 (404)
T ss_pred             HHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Confidence            34556777899999999987652 222        22  56788999999999999999999998874221111111111


Q ss_pred             HHHHHH-cCCHHHHHHHHHHHHccCCC
Q 017383          158 ATARKE-LGKLKESIEDSEFALRLEPQ  183 (372)
Q Consensus       158 g~~~~~-lg~~~~A~~~~~~al~l~P~  183 (372)
                      ..-+-. .+..+.....+--++.+.|.
T Consensus       205 ~~q~d~i~K~~eqMyaLlAic~~l~p~  231 (404)
T PF10255_consen  205 SYQYDQINKKNEQMYALLAICLSLCPQ  231 (404)
T ss_pred             cchhhHHHhHHHHHHHHHHHHHHhCCC
Confidence            111111 23445555566666666775

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=84.48  E-value=3.9  Score=45.17  Aligned_cols=121  Identities=16%  Similarity=0.227  Sum_probs=89.5

Q ss_pred             CCCCCchhhHHHHHhhhhcCCCC------chHHHHHHHHHHHHHhhcHHHHHHHHHHHHcc--------CCC-HHHHHHH
Q 017383           59 NSYSRNYDPVSHISSSLMNEEST------PDATSEKELGNECFKQKKFKEAIDCYSRSIAL--------SPT-AVAYANR  123 (372)
Q Consensus        59 y~~g~~~~A~~~~~~al~~~p~~------~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~--------~p~-~~~~~~l  123 (372)
                      |.+|++++|+....++.-+....      .....+.+++...+..+....|+..+.+++.+        .|. +....++
T Consensus       984 ~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nl 1063 (1236)
T KOG1839|consen  984 NRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINL 1063 (1236)
T ss_pred             hhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHH
Confidence            36788999988887766533221      24455668888888888999999999998875        244 6777899


Q ss_pred             HHHHHHhcCHHHHHHHHHHHHhcCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 017383          124 AMAYLKLRRFQEAEDDCTEALNLDDR--------YIKAYSRRATARKELGKLKESIEDSEFALR  179 (372)
Q Consensus       124 a~~~~~~g~~~eA~~~~~~Al~l~p~--------~~~a~~~lg~~~~~lg~~~~A~~~~~~al~  179 (372)
                      +..+..+++++.|+.+.+.|+.++-.        ....+..++.+...+|++..|+...+..+.
T Consensus      1064 e~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1064 ELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHH
Confidence            99999999999999999999986422        245566677777777777777666655554

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=84.34  E-value=13  Score=32.84  Aligned_cols=74  Identities=15%  Similarity=0.177  Sum_probs=53.9

Q ss_pred             CchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-----HHHHHHHHHHHHHhcCHHHHH
Q 017383           63 RNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-----AVAYANRAMAYLKLRRFQEAE  137 (372)
Q Consensus        63 ~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-----~~~~~~la~~~~~~g~~~eA~  137 (372)
                      .-+.|...|-.+-. .|....+...+.+|. |+...+-++|+..|.++|++.+.     +.++..++.+|.++|+++.|-
T Consensus       121 ~d~~A~~~fL~~E~-~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  121 GDQEALRRFLQLEG-TPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             CcHHHHHHHHHHcC-CCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            33456666554433 334456666667775 44588899999999999998632     889999999999999999885


Q ss_pred             H
Q 017383          138 D  138 (372)
Q Consensus       138 ~  138 (372)
                      -
T Consensus       199 i  199 (203)
T PF11207_consen  199 I  199 (203)
T ss_pred             h
Confidence            3

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=83.90  E-value=5.1  Score=44.32  Aligned_cols=99  Identities=17%  Similarity=0.159  Sum_probs=82.9

Q ss_pred             hHHHHHHHHHHHHHhhcHHHHHHHHHHHHcc-------C-CC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC------
Q 017383           83 DATSEKELGNECFKQKKFKEAIDCYSRSIAL-------S-PT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD------  147 (372)
Q Consensus        83 ~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~-------~-p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~------  147 (372)
                      -+..+..++..+...|++++|+..-.++.-+       + |+ ...|.+++...+..++...|+..+.+++.+.      
T Consensus       972 ~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge 1051 (1236)
T KOG1839|consen  972 VASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGE 1051 (1236)
T ss_pred             HHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCC
Confidence            3445778999999999999999988777654       3 22 7789999999999999999999999998763      


Q ss_pred             --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 017383          148 --DRYIKAYSRRATARKELGKLKESIEDSEFALRLE  181 (372)
Q Consensus       148 --p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~  181 (372)
                        |.-+....+++.++..+++++-|+.+.+.|+.+.
T Consensus      1052 ~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1052 DHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred             CCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence              5556667889999999999999999999999854

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=83.49  E-value=8.3  Score=35.17  Aligned_cols=55  Identities=11%  Similarity=0.102  Sum_probs=27.2

Q ss_pred             HHHHHHHHHhhcHHHHHHHHHHHHccCCC-------HHHHHHHHHHHHHhcCHHHHHHHHHH
Q 017383           88 KELGNECFKQKKFKEAIDCYSRSIALSPT-------AVAYANRAMAYLKLRRFQEAEDDCTE  142 (372)
Q Consensus        88 ~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-------~~~~~~la~~~~~~g~~~eA~~~~~~  142 (372)
                      ..+|..|+..|+|++|+.+|+.+......       ..++..+..|+..+|+.+..+..+-+
T Consensus       182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le  243 (247)
T PF11817_consen  182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE  243 (247)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            34555555555555555555555433221       34444455555555555555444433

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=83.34  E-value=16  Score=37.24  Aligned_cols=104  Identities=20%  Similarity=0.048  Sum_probs=78.0

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHH-HHccCCC-HHH------HHHHHHHHHHhc
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSR-SIALSPT-AVA------YANRAMAYLKLR  131 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~-al~~~p~-~~~------~~~la~~~~~~g  131 (372)
                      ..++...+.-....++..+|.+..+  +.++|......|....++..+.. +....|+ ...      ++.+|.....+|
T Consensus        79 ~~~~~~~~~~~~~~~l~~~~~~~~~--~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~  156 (620)
T COG3914          79 PLADSTLAFLAKRIPLSVNPENCPA--VQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLG  156 (620)
T ss_pred             ccccchhHHHHHhhhHhcCcccchH--HHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhc
Confidence            5677778888899999999986555  55888887777776666666555 7888887 333      233588888899


Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 017383          132 RFQEAEDDCTEALNLDDRYIKAYSRRATARKELG  165 (372)
Q Consensus       132 ~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg  165 (372)
                      +..++....+++..+.|.++...-.+...+.+.-
T Consensus       157 ~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~c  190 (620)
T COG3914         157 RTAEAELALERAVDLLPKYPRVLGALMTARQEQC  190 (620)
T ss_pred             cHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhc
Confidence            9999999999999999999776555555544443

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=82.96  E-value=17  Score=31.73  Aligned_cols=96  Identities=15%  Similarity=-0.002  Sum_probs=63.5

Q ss_pred             hHHHHHHHHHHHH-----HhhcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHhc-------CHHHHHHHHHHHHhcCCCC
Q 017383           83 DATSEKELGNECF-----KQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLR-------RFQEAEDDCTEALNLDDRY  150 (372)
Q Consensus        83 ~a~~~~~~g~~~~-----~~g~~~~Ai~~y~~al~~~p~~~~~~~la~~~~~~g-------~~~eA~~~~~~Al~l~p~~  150 (372)
                      .+...+.+|+.++     ..++...|+++|..+-..+- +.+..++|.++..-.       +..+|++++++|..++  +
T Consensus        67 y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~n~-~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~  143 (248)
T KOG4014|consen   67 YPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDANI-PQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--D  143 (248)
T ss_pred             CcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhccCC-HHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--C
Confidence            3444666776554     35678999999999886432 666777777665322       3778999999988764  5


Q ss_pred             HHHHHHHHHHHHHc------------------------CCHHHHHHHHHHHHccC
Q 017383          151 IKAYSRRATARKEL------------------------GKLKESIEDSEFALRLE  181 (372)
Q Consensus       151 ~~a~~~lg~~~~~l------------------------g~~~~A~~~~~~al~l~  181 (372)
                      ..+.++|...|..-                        .+++.|...--+|..++
T Consensus       144 ~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel~  198 (248)
T KOG4014|consen  144 GEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACELD  198 (248)
T ss_pred             chHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhcC
Confidence            55666666555433                        45666766666666664

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=82.44  E-value=2.5  Score=41.47  Aligned_cols=59  Identities=15%  Similarity=0.041  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 017383          120 YANRAMAYLKLRRFQEAEDDCTEALNLD---------DRYIKAYSRRATARKELGKLKESIEDSEFALR  179 (372)
Q Consensus       120 ~~~la~~~~~~g~~~eA~~~~~~Al~l~---------p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~  179 (372)
                      +..+..++.-+|+|..|++.++.. .++         +-+...+|..|.+|..+++|.+|+..|..+|.
T Consensus       125 ligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~  192 (404)
T PF10255_consen  125 LIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL  192 (404)
T ss_pred             HHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445677889999999999887652 222         34567799999999999999999999999874

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=82.15  E-value=2.7  Score=39.44  Aligned_cols=84  Identities=11%  Similarity=0.179  Sum_probs=66.1

Q ss_pred             HHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHH-HHHHHHHhcCHHHHHHHHHHHHhcCC
Q 017383           71 ISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYAN-RAMAYLKLRRFQEAEDDCTEALNLDD  148 (372)
Q Consensus        71 ~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~-la~~~~~~g~~~eA~~~~~~Al~l~p  148 (372)
                      |.++-...++++..+  ...++...+.|-|.+--..|.+++...|. +++|.. -+.-+...++++.+...+.++++++|
T Consensus        96 ~~R~tnkff~D~k~w--~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~  173 (435)
T COG5191          96 LYRSTNKFFNDPKIW--SQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNS  173 (435)
T ss_pred             eehhhhcCCCCcHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCC
Confidence            444444555655554  46677777888999999999999999998 777754 45567788999999999999999999


Q ss_pred             CCHHHHHH
Q 017383          149 RYIKAYSR  156 (372)
Q Consensus       149 ~~~~a~~~  156 (372)
                      +.+..|+.
T Consensus       174 ~~p~iw~e  181 (435)
T COG5191         174 RSPRIWIE  181 (435)
T ss_pred             CCchHHHH
Confidence            99887653

>PHA02537 M terminase endonuclease subunit; Provisional

Probab=82.02  E-value=8.6  Score=34.70  Aligned_cols=25  Identities=12%  Similarity=0.036  Sum_probs=20.9

Q ss_pred             CCCCCchhhHHHHHhhhhcCCCCch
Q 017383           59 NSYSRNYDPVSHISSSLMNEESTPD   83 (372)
Q Consensus        59 y~~g~~~~A~~~~~~al~~~p~~~~   83 (372)
                      ++.|+|+.|++....+|+.+-..|+
T Consensus        94 ~D~Gd~~~AL~ia~yAI~~~l~~Pd  118 (230)
T PHA02537         94 FDIGDFDGALEIAEYALEHGLTMPD  118 (230)
T ss_pred             eeccCHHHHHHHHHHHHHcCCCCCc
Confidence            4889999999999999997755544

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=81.20  E-value=9.1  Score=35.64  Aligned_cols=61  Identities=21%  Similarity=0.186  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 017383           86 SEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNL  146 (372)
Q Consensus        86 ~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l  146 (372)
                      ++..++..+...|+++.++..+++.+..+|- -.+|..+-.+|+..|+...|+..|.+.-.+
T Consensus       155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            4567788889999999999999999999998 888888889999999999999998886543

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=80.50  E-value=10  Score=39.41  Aligned_cols=108  Identities=11%  Similarity=0.055  Sum_probs=71.2

Q ss_pred             CCCchhhHHHHHhhhhcCCCCchHHHHHHHH-HHHHHhhcHHHHHHHHHHHHccCCC---HHHHHHHHHHHHHhcCHHHH
Q 017383           61 YSRNYDPVSHISSSLMNEESTPDATSEKELG-NECFKQKKFKEAIDCYSRSIALSPT---AVAYANRAMAYLKLRRFQEA  136 (372)
Q Consensus        61 ~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g-~~~~~~g~~~~Ai~~y~~al~~~p~---~~~~~~la~~~~~~g~~~eA  136 (372)
                      .|+|++|...|-.+-+.           .++ ..+.+.|+|-.-...++..=.-+.+   ..++.++|..+..+..|++|
T Consensus       747 ~g~feeaek~yld~drr-----------DLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A  815 (1189)
T KOG2041|consen  747 YGEFEEAEKLYLDADRR-----------DLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEA  815 (1189)
T ss_pred             hcchhHhhhhhhccchh-----------hhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47788887777554322           223 2456788888888777765443333   78999999999999999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHH
Q 017383          137 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQL  191 (372)
Q Consensus       137 ~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l  191 (372)
                      .++|...-..        -++..+++.+..|++-.    .....-|++.+....+
T Consensus       816 ~~yY~~~~~~--------e~~~ecly~le~f~~LE----~la~~Lpe~s~llp~~  858 (1189)
T KOG2041|consen  816 AKYYSYCGDT--------ENQIECLYRLELFGELE----VLARTLPEDSELLPVM  858 (1189)
T ss_pred             HHHHHhccch--------HhHHHHHHHHHhhhhHH----HHHHhcCcccchHHHH
Confidence            9999885332        24566777777666533    3334446555544333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	372
1wao_1	477	Pp5 Structure Length = 477		7e-17
1a17_A	166	Tetratricopeptide Repeats Of Protein Phosphatase 5		2e-16
2bug_A	140	Solution Structure Of The Tpr Domain From Protein P		3e-15
2vyi_A	131	Crystal Structure Of The Tpr Domain Of Human Sgt Le		9e-13
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		2e-12
4gco_A	126	Central Domain Of Stress-Induced Protein-1 (Sti-1)		2e-11
2dba_A	148	The Solution Structure Of The Tetratrico Peptide Re		2e-11
3q47_B	137	Crystal Structure Of Tpr Domain Of Chip Complexed W		2e-11
2c2l_A	281	Crystal Structure Of The Chip U-Box E3 Ubiquitin Li		2e-11
2lni_A	133	Solution Nmr Structure Of Stress-Induced-Phosphopro		4e-10
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		1e-09
1elw_A	118	Crystal Structure Of The Tpr1 Domain Of Hop In Comp		3e-09
2wqh_A	125	Crystal Structure Of Ctpr3y3 Length = 125		4e-08
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		7e-08
3sz7_A	164	Crystal Structure Of The Sgt2 Tpr Domain From Asper		3e-07
3uq3_A	258	Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length =		5e-07
2if4_A	338	Crystal Structure Of A Multi-Domain Immunophilin Fr		7e-07
3rkv_A	162	C-Terminal Domain Of Protein C56c10.10, A Putative		9e-07
2gw1_A	514	Crystal Structure Of The Yeast Tom70 Length = 514		1e-06
3upv_A	126	Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length =		1e-06
1p5q_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Lengt		2e-06
1ihg_A	370	Bovine Cyclophilin 40, Monoclinic Form Length = 370		6e-06
1qz2_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Compl		6e-06
1kt0_A	457	Structure Of The Large Fkbp-like Protein, Fkbp51, I		7e-06
1kt1_A	457	Structure Of The Large Fkbp-Like Protein, Fkbp51, I		8e-06
2l6j_A	111	Tah1 Complexed By Meevd Length = 111		8e-06
1w3b_A	388	The Superhelical Tpr Domain Of O-Linked Glcnac Tran		1e-05
3fp2_A	537	Crystal Structure Of Tom71 Complexed With Hsp82 C-T		2e-05
3lca_A	533	Structure Of Tom71 Complexed With Hsp70 Ssa1 C Term		2e-05
4gcn_A	127	N-Terminal Domain Of Stress-Induced Protein-1 (Sti-		4e-05
1na3_A	91	Design Of Stable Alpha-Helical Arrays From An Ideal		3e-04
2avp_A	70	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		5e-04

>pdb|1WAO|1 Chain 1, Pp5 Structure Length = 477

Iteration: 1
 Score = 84.7 bits (208), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 73/116 (62%), Gaps = 1/116 (0%)
Query: 92  NECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY 150
           N+ FK K ++ AI  YS++I L+P+ A+ Y NR++AYL+   +  A  D T A+ LD +Y
Sbjct: 14  NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY 73
Query: 151 IKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKA 206
           IK Y RRA +   LGK + ++ D E  ++++P +++ K +  E   + +++ F++A
Sbjct: 74  IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERA 129

>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5 Length = 166

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 74/120 (61%), Gaps = 1/120 (0%)
Query: 88  KELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNL 146
           K   N+ FK K ++ AI  YS++I L+P+ A+ Y NR++AYL+   +  A  D T A+ L
Sbjct: 17  KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL 76
Query: 147 DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKA 206
           D +YIK Y RRA +   LGK + ++ D E  ++++P +++ K +  E   + +++ F++A
Sbjct: 77  DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERA 136

>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt Length = 131

Iteration: 1
 Score = 71.2 bits (173), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 48/124 (38%), Positives = 67/124 (54%), Gaps = 3/124 (2%)
Query: 75  LMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRF 133
           L +EE + +A   K  GNE  K + F+ A+  Y ++I L+P  AV + NRA AY KL  +
Sbjct: 3   LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNY 62
Query: 134 QEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQL-- 191
             A  DC  A+ +D  Y KAY R   A   L K  E++   + AL L+P N+  K  L  
Sbjct: 63  AGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKI 122
Query: 192 AEVK 195
           AE+K
Sbjct: 123 AELK 126

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 64/113 (56%), Gaps = 1/113 (0%)
Query: 84  ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTE 142
           A + K LGN  +KQ  +++AI+ Y +++ L P  A A+ N   AY K   +Q+A +   +
Sbjct: 9   AEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQK 68
Query: 143 ALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVK 195
           AL LD    KA+ RR  A  + G  +++IED + AL L+P N + K+ L   K
Sbjct: 69  ALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAK 121

>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 126

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/110 (37%), Positives = 62/110 (56%), Gaps = 7/110 (6%)
Query: 84  ATSEKELGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTE 142
           A  EK  GNE FK+  +  A+  Y+ ++   P  A+ Y+NRA    KL  FQ A DDC  
Sbjct: 13  AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDT 72
Query: 143 ALNLDDRYIKAYSRRA---TARKELGKLKESIEDSEFALRLEPQNQEIKK 189
            + LD ++IK Y R+A    A +E  K + + ED   AL+++P N+E ++
Sbjct: 73  CIRLDSKFIKGYIRKAACLVAMREWSKAQRAYED---ALQVDPSNEEARE 119

>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of Human Smooth Muscle Cell Associated Protein-1, Isoform 2 Length = 148

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 72/119 (60%), Gaps = 7/119 (5%)
Query: 80  STPDATSEKEL---GNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRR 132
           +TP A+S ++L   GNE FK   +  A+  Y++++ L  T    AV + NRA  +LKL  
Sbjct: 21  ATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLED 80
Query: 133 FQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQL 191
           + +AE + ++A+  D   +KA  RR+ A ++LG+L +++ D +  + LEP+N+  ++ L
Sbjct: 81  YDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEAL 139

>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With Pseudophosphorylated Smad1 Peptide Length = 137

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 57/101 (56%), Gaps = 1/101 (0%)
Query: 81  TPDATSEKELGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDD 139
           +P A   KE GN  F  +K+ EA  CY R+I  +P  AV Y NRA+ YLK+++ ++A  D
Sbjct: 6   SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALAD 65
Query: 140 CTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRL 180
           C  AL LD + +KA+      + E+    E+I + + A  L
Sbjct: 66  CRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 106

>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase Length = 281

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 57/101 (56%), Gaps = 1/101 (0%)
Query: 81  TPDATSEKELGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDD 139
           +P A   KE GN  F  +K+ EA  CY R+I  +P  AV Y NRA+ YLK+++ ++A  D
Sbjct: 1   SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALAD 60
Query: 140 CTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRL 180
           C  AL LD + +KA+      + E+    E+I + + A  L
Sbjct: 61  CRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 101

>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1 Sti1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4403e Length = 133

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 61/107 (57%), Gaps = 2/107 (1%)
Query: 82  PD-ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDD 139
           PD A   K  GNECF++  + +A+  Y+ +I  +P  A  Y+NRA  Y KL  FQ A  D
Sbjct: 13  PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKD 72
Query: 140 CTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186
           C E + L+  +IK Y+R+A A + +    ++++  + AL L+   +E
Sbjct: 73  CEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKE 119

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 55/107 (51%), Gaps = 1/107 (0%)
Query: 90  LGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           LGN  +KQ  + EAI+ Y +++ L P  A A+ N   AY K   + EA +   +AL LD 
Sbjct: 15  LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74
Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVK 195
              +A+     A  + G   E+IE  + AL L+P N E K+ L   K
Sbjct: 75  NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 121

>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex With A Hsc70 Peptide Length = 118

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 61/110 (55%), Gaps = 1/110 (0%)
Query: 88  KELGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTEALNL 146
           KE GN+        +A+ CYS +I L P   V Y+NR+ AY K   +Q+A +D  + ++L
Sbjct: 8   KEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL 67
Query: 147 DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS 196
              + K YSR+A A + L + +E+    E  L+ E  N ++K+ L  +++
Sbjct: 68  KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117

>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 53/107 (49%), Gaps = 1/107 (0%)
Query: 90  LGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           LGN  +KQ  + EAI+ Y +++ L P  A A+ N   AY K   + EA +   +AL L  
Sbjct: 15  LGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYP 74
Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVK 195
              +A+     A  + G   E+IE  + AL L P N E K+ L   K
Sbjct: 75  NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLGNAK 121

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 55/104 (52%), Gaps = 1/104 (0%)
Query: 90  LGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           LGN  +KQ  + EAI+ Y +++ L P +A A+ N   AY K   + EA +   +AL LD 
Sbjct: 7   LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 66
Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLA 192
           R  +A+     A  + G   E+IE  + AL L+P++ E    L 
Sbjct: 67  RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLG 110

>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus Fumigatus Length = 164

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 57/102 (55%), Gaps = 1/102 (0%)
Query: 81  TPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAY-ANRAMAYLKLRRFQEAEDD 139
           TP++   K  GN    +K++ +AID Y+++++++P    Y +NRA AY    + ++A +D
Sbjct: 8   TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAED 67
Query: 140 CTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLE 181
              A  +D +Y KA+SR   AR ++   K + E  E  +  E
Sbjct: 68  AELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAE 109

>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length = 258

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 82  PDATSEKEL-GNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDD 139
           P+   E  L G E F +  +  A+  Y+  I  +P  A  Y+NRA A  KL  F EA  D
Sbjct: 136 PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIAD 195
Query: 140 CTEALNLDDRYIKAYSRRATAR 161
           C +A+  D  +++AY R+ATA+
Sbjct: 196 CNKAIEKDPNFVRAYIRKATAQ 217

>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From Arabidopsis Thaliana Length = 338

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 71/151 (47%), Gaps = 22/151 (14%)
Query: 73  SSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIA------------------LS 114
           S +  EE    A   K  GN  FK++K +EA+  Y  +IA                  L+
Sbjct: 168 SDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALA 227
Query: 115 PTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDS 174
                + N A   +KL+R+ EA   C   L  +++  KA  RR  A+ ELG++  + +D 
Sbjct: 228 VKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDF 287
Query: 175 EFALRLEPQNQEIKKQLAEV----KSLYEKE 201
             A +  P ++ I+++L  +    K+LY+K+
Sbjct: 288 RKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318

>pdb|3RKV|A Chain A, C-Terminal Domain Of Protein C56c10.10, A Putative Peptidylprolyl Isomerase, From Caenorhabditis Elegans Length = 162

Iteration: 1
 Score = 51.2 bits (121), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 50/111 (45%), Gaps = 19/111 (17%)
Query: 91  GNECFKQKKFKEAIDCYSRSIALSPTAVA-------------------YANRAMAYLKLR 131
           GNE F QK +KEAID Y  ++    T +                    YAN +  YL + 
Sbjct: 18  GNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIG 77
Query: 132 RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEP 182
              EAE+  +E L  ++   KA  RRA AR    KL E+ ED +  LR  P
Sbjct: 78  DLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP 128

>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70 Length = 514

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 70/132 (53%), Gaps = 7/132 (5%)
Query: 84  ATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEA 143
           A + K+ GN+ F+ KK+ +AI  Y+ ++ L    V Y+N +  Y+ +   ++  +  T+A
Sbjct: 6   ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKA 65
Query: 144 LNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVF 203
           L L   Y K   RRA+A + LGK      D+ F L +   N +     A ++ + E+ + 
Sbjct: 66  LELKPDYSKVLLRRASANEGLGKFA----DAMFDLSVLSLNGDFND--ASIEPMLERNLN 119
Query: 204 QKA-SKTLEKYG 214
           ++A SK  EK+G
Sbjct: 120 KQAMSKLKEKFG 131

>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length = 126

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 91  GNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR 149
           G E F +  +  A+  Y+  I  +P  A  Y+NRA A  KL  F EA  DC +A+  D  
Sbjct: 11  GKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN 70
Query: 150 YIKAYSRRATARKELGKLKESIE 172
           +++AY R+ATA+  + +   ++E
Sbjct: 71  FVRAYIRKATAQIAVKEYASALE 93

>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Length = 336

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 66/149 (44%), Gaps = 27/149 (18%)
Query: 77  NEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANR------------- 123
           +EE    +T  KE G   FK+ K+K+A+  Y + ++      +++N              
Sbjct: 140 SEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASH 199
Query: 124 ---AMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRL 180
              AM +LKL+ F  A + C +AL LD    K  SRR  A   +   + +  D +  L+L
Sbjct: 200 LNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 259
Query: 181 EPQN-----------QEIKKQLAEVKSLY 198
            P N           Q I++QLA  K LY
Sbjct: 260 YPNNKAAKTQLAVCQQRIRRQLAREKKLY 288

>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form Length = 370

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 60/125 (48%), Gaps = 17/125 (13%)
Query: 88  KELGNECFKQKKFKEAIDCYSRSI----------------ALSPTAVAYA-NRAMAYLKL 130
           K +GN  FK + ++ AI  Y++ +                 L P A++   N     LK+
Sbjct: 227 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKM 286
Query: 131 RRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQ 190
             +Q A D C EAL +D    KA  RRA   + L +  +++ D + A  + P+++ I+ +
Sbjct: 287 SDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAE 346
Query: 191 LAEVK 195
           L +VK
Sbjct: 347 LLKVK 351

>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With The C-Terminal Peptide Meevd Of Hsp90 Length = 336

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 67/154 (43%), Gaps = 27/154 (17%)
Query: 72  SSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANR-------- 123
           S  + +EE    +T  KE G   FK+ K+K+A+  Y + ++      +++N         
Sbjct: 135 SWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQAL 194
Query: 124 --------AMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSE 175
                   AM +LKL+ F  A + C +AL LD    K   RR  A   +   + +  D +
Sbjct: 195 RLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELARADFQ 254
Query: 176 FALRLEPQN-----------QEIKKQLAEVKSLY 198
             L+L P N           Q I++QLA  K LY
Sbjct: 255 KVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLY 288

>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 56/121 (46%), Gaps = 16/121 (13%)
Query: 88  KELGNECFKQKKFKEAIDCYSRSIAL----------------SPTAVAYANRAMAYLKLR 131
           KE G   FK  K+ +A+  Y + ++                 S    A+ N AM YLKLR
Sbjct: 272 KEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLR 331
Query: 132 RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQL 191
            + +A + C +AL LD    K   RR  A+  + + + +  D E  L + PQN+  + Q+
Sbjct: 332 EYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQI 391
Query: 192 A 192
           +
Sbjct: 392 S 392

>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 16/120 (13%)
Query: 88  KELGNECFKQKKFKEAIDCYSRSIAL----------------SPTAVAYANRAMAYLKLR 131
           KE G   FK  K+ +A+  Y + ++                 S    A+ N AM YLKLR
Sbjct: 272 KEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLR 331
Query: 132 RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQL 191
            + +A + C +AL LD    K   RR  A+  + + + +  D E  L + PQN+  + Q+
Sbjct: 332 EYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQI 391

>pdb|2L6J|A Chain A, Tah1 Complexed By Meevd Length = 111

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 87  EKELGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTEAL 144
           +KE GN  FKQ  ++EA+ CY + I   P   V Y+N+AMA +KL  + +A   C + L
Sbjct: 7   QKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGL 65

>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. Length = 388

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           LGN   + + F  A+  Y R+++LSP  AV + N A  Y +      A D    A+ L  
Sbjct: 209 LGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP 268
Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVK 195
            +  AY   A A KE G + E+ +    ALRL P + +    LA +K
Sbjct: 269 HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK 315

>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal Fragment Length = 537

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 84  ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTE 142
           A   K  GN  F  K F EAI  Y  +I L P   V Y+N +  Y+     ++  +  T+
Sbjct: 25  AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTK 84
Query: 143 ALNLDDRYIKAYSRRATARKELGKLKESIED 173
           AL +   + KA  RRA+A + LG   +++ D
Sbjct: 85  ALEIKPDHSKALLRRASANESLGNFTDAMFD 115

>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal Tail Indicating Conformational Plasticity Length = 533

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 84  ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTE 142
           A   K  GN  F  K F EAI  Y  +I L P   V Y+N +  Y+     ++  +  T+
Sbjct: 21  AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTK 80
Query: 143 ALNLDDRYIKAYSRRATARKELGKLKESIED 173
           AL +   + KA  RRA+A + LG   +++ D
Sbjct: 81  ALEIKPDHSKALLRRASANESLGNFTDAMFD 111

>pdb|4GCN|A Chain A, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 127

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 81  TPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVA-YANRAMAYLKLRRFQEAEDD 139
           T  A +EK+LGN  +KQK F++A   Y ++I L P+ +  Y N+A  Y + ++F E    
Sbjct: 5   TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQF 64
Query: 140 CTEALNL 146
           C +A+ +
Sbjct: 65  CEKAVEV 71

>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Query: 90  LGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           LGN  +KQ  + EAI+ Y +++ L P  A A+ N   AY K   + EA +   +AL LD 
Sbjct: 15  LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD- 73
Query: 149 RYIKAYSRRATARKELGKLKE 169
                    A A++ LG  K+
Sbjct: 74  ------PNNAEAKQNLGNAKQ 88

>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix Length = 70

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 90  LGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           LGN  +KQ  + EAI+ Y +++ L P +A A+ N   AY K   + EA +   +AL LD 
Sbjct: 9   LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 68
Query: 149 R 149
           R
Sbjct: 69  R 69

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	372
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	2e-45
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	2e-44
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	3e-43
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	3e-43
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	1e-42
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	2e-42
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	9e-41
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	1e-40
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	2e-40
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	1e-37
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	3e-34
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	4e-34
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	2e-33
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	3e-33
2l6j_A	111	TPR repeat-containing protein associated with HSP;	3e-32
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	7e-32
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	1e-30
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-29
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-25
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-18
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	8e-16
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	7e-14
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-28
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-24
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-19
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-19
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-19
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-09
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-27
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-26
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	8e-20
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-15
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-14
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-27
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-24
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	6e-19
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-15
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-15
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	6e-15
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-14
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	1e-26
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-23
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	9e-23
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-20
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-17
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-17
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-14
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-06
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	2e-23
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	8e-22
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-20
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-20
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	8e-20
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	8e-20
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-19
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-19
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-19
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	7e-19
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-17
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-13
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-10
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	3e-20
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	4e-11
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	8e-20
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-19
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-19
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	4e-19
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	5e-14
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-12
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	2e-19
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	5e-19
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	3e-10
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	3e-19
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	4e-14
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	1e-10
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	7e-19
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-18
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-18
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-10
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	5e-10
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	7e-19
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	3e-17
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	7e-16
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	9e-16
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	6e-09
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-18
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	3e-15
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	9e-15
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-13
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	6e-10
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	4e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-18
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	6e-18
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-17
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-17
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-17
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-17
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	6e-17
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-16
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-16
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	8e-16
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	6e-12
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-06
3u4t_A	272	TPR repeat-containing protein; structural genomics	9e-18
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-17
3u4t_A	272	TPR repeat-containing protein; structural genomics	4e-17
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-16
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-15
3u4t_A	272	TPR repeat-containing protein; structural genomics	4e-09
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-07
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-17
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	7e-17
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	4e-16
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-13
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-10
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-17
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-15
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-15
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	9e-14
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-08
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-08
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	4e-17
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	4e-07
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	1e-06
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	5e-17
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-16
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-13
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	4e-09
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-16
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-16
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-15
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	7e-12
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-11
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-11
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	7e-11
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	8e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	9e-07
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-16
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-14
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	6e-14
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-12
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	5e-11
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	7e-10
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	5e-07
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	3e-16
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-15
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	6e-15
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	5e-11
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	7e-11
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-04
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	6e-16
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	8e-15
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-09
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-15
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-15
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	9e-15
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-14
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-13
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-12
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-12
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-12
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-12
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-11
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	8e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	8e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-04
2kat_A	115	Uncharacterized protein; NESG, structure, structur	2e-15
2kat_A	115	Uncharacterized protein; NESG, structure, structur	1e-08
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	3e-15
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	1e-11
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	3e-08
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	8e-15
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	8e-15
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-13
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	4e-06
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	9e-15
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-14
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	6e-13
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-12
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	4e-11
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	7e-04
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	2e-13
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	5e-11
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	6e-13
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	2e-09
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	7e-09
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	7e-13
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	2e-07
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-12
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	3e-11
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-09
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	1e-08
3k9i_A	117	BH0479 protein; putative protein binding protein,	6e-12
3k9i_A	117	BH0479 protein; putative protein binding protein,	1e-06
3k9i_A	117	BH0479 protein; putative protein binding protein,	7e-05
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	9e-12
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	1e-10
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	9e-12
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	2e-11
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-10
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	4e-10
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	6e-09
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	2e-11
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	3e-07
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	3e-07
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-11
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-09
4g1t_A	472	Interferon-induced protein with tetratricopeptide	5e-09
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-08
4g1t_A	472	Interferon-induced protein with tetratricopeptide	7e-08
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-07
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-06
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-06
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	6e-10
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	3e-09
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	4e-08
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	2e-08
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	1e-06
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	4e-04
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	2e-08
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	3e-06
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	1e-05
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	8e-08
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	2e-07
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	2e-07
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	3e-06
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	1e-05
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	9e-05
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	2e-07
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	3e-06
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	3e-05
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	8e-04
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	4e-07
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	9e-07
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	4e-05
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	7e-06
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	2e-04
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	2e-05
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	4e-05
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	2e-05
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	7e-05
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	6e-04
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	3e-05
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	3e-04
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score =  152 bits (386), Expect = 2e-45
 Identities = 44/137 (32%), Positives = 78/137 (56%), Gaps = 1/137 (0%)

Query: 78  EESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEA 136
           + +   A   K   N+ FK K ++ AI  YS++I L+P+ A+ Y NR++AYL+   +  A
Sbjct: 7   DGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYA 66

Query: 137 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS 196
             D T A+ LD +YIK Y RRA +   LGK + ++ D E  ++++P +++ K +  E   
Sbjct: 67  LGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNK 126

Query: 197 LYEKEVFQKASKTLEKY 213
           + +++ F++A    E  
Sbjct: 127 IVKQKAFERAIAGDEHK 143

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score =  148 bits (376), Expect = 2e-44
 Identities = 44/125 (35%), Positives = 64/125 (51%), Gaps = 1/125 (0%)

Query: 77  NEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQE 135
           +EE + +A   K  GNE  K + F+ A+  Y ++I L+P  AV + NRA AY KL  +  
Sbjct: 5   SEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAG 64

Query: 136 AEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVK 195
           A  DC  A+ +D  Y KAY R   A   L K  E++   + AL L+P N+  K  L   +
Sbjct: 65  AVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAE 124

Query: 196 SLYEK 200
               +
Sbjct: 125 LKLRE 129

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score =  145 bits (368), Expect = 3e-43
 Identities = 37/113 (32%), Positives = 60/113 (53%), Gaps = 1/113 (0%)

Query: 84  ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTE 142
           A  EK  GNE FK+  +  A+  Y+ ++   P  A+ Y+NRA    KL  FQ A DDC  
Sbjct: 13  AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDT 72

Query: 143 ALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVK 195
            + LD ++IK Y R+A     + +  ++    E AL+++P N+E ++ +    
Sbjct: 73  CIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score =  145 bits (368), Expect = 3e-43
 Identities = 36/114 (31%), Positives = 61/114 (53%), Gaps = 1/114 (0%)

Query: 84  ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTE 142
               KE GN+        +A+ CYS +I L P   V Y+NR+ AY K   +Q+A +D  +
Sbjct: 4   VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 63

Query: 143 ALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS 196
            ++L   + K YSR+A A + L + +E+    E  L+ E  N ++K+ L  +++
Sbjct: 64  TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score =  144 bits (365), Expect = 1e-42
 Identities = 36/113 (31%), Positives = 59/113 (52%), Gaps = 1/113 (0%)

Query: 84  ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTE 142
           A   K  GNECF++  + +A+  Y+ +I  +P  A  Y+NRA  Y KL  FQ A  DC E
Sbjct: 16  ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEE 75

Query: 143 ALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVK 195
            + L+  +IK Y+R+A A + +    ++++  + AL L+   +E         
Sbjct: 76  CIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCM 128

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score =  144 bits (364), Expect = 2e-42
 Identities = 35/123 (28%), Positives = 66/123 (53%), Gaps = 4/123 (3%)

Query: 78  EESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRF 133
                     ++ GNE FK   +  A+  Y++++ L  T    AV + NRA  +LKL  +
Sbjct: 22  TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDY 81

Query: 134 QEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAE 193
            +AE + ++A+  D   +KA  RR+ A ++LG+L +++ D +  + LEP+N+  ++ L  
Sbjct: 82  DKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRN 141

Query: 194 VKS 196
           +  
Sbjct: 142 ISG 144

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score =  140 bits (355), Expect = 9e-41
 Identities = 35/127 (27%), Positives = 64/127 (50%), Gaps = 3/127 (2%)

Query: 78  EESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEA 136
              TP++   K  GN    +K++ +AID Y+++++++P   +  +NRA AY    + ++A
Sbjct: 5   MAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKA 64

Query: 137 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN--QEIKKQLAEV 194
            +D   A  +D +Y KA+SR   AR ++   K + E  E  +  E       +K+ L   
Sbjct: 65  AEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETT 124

Query: 195 KSLYEKE 201
           K   E+ 
Sbjct: 125 KRKIEEA 131

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score =  138 bits (351), Expect = 1e-40
 Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 2/123 (1%)

Query: 84  ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTE 142
           A   +  G E F +  +  A+  Y+  I  +P  A  Y+NRA A  KL  F EA  DC +
Sbjct: 4   AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 63

Query: 143 ALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEV 202
           A+  D  +++AY R+ATA+  + +   ++E  + A   + +         E+  LY K  
Sbjct: 64  AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNN-GSSAREIDQLYYKAS 122

Query: 203 FQK 205
            Q+
Sbjct: 123 QQR 125

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score =  138 bits (350), Expect = 2e-40
 Identities = 41/134 (30%), Positives = 66/134 (49%), Gaps = 6/134 (4%)

Query: 78  EESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEA 136
              +P A   KE GN  F  +K+ EA  CY R+I  +P  AV Y NRA+ YLK+++ ++A
Sbjct: 3   HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQA 62

Query: 137 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ-----EIKKQL 191
             DC  AL LD + +KA+      + E+    E+I + + A  L  + +     +I   L
Sbjct: 63  LADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL 122

Query: 192 AEVKSLYEKEVFQK 205
              K      + ++
Sbjct: 123 RIAKKKRWNSIEER 136

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score =  135 bits (342), Expect = 1e-37
 Identities = 45/191 (23%), Positives = 77/191 (40%), Gaps = 6/191 (3%)

Query: 81  TPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDD 139
           +P A   KE GN  F  +K+ EA  CY R+I  +P  AV Y NRA+ YLK+++ ++A  D
Sbjct: 1   SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALAD 60

Query: 140 CTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE-----IKKQLAEV 194
           C  AL LD + +KA+      + E+    E+I + + A  L  + +      I   L   
Sbjct: 61  CRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA 120

Query: 195 KSLYEKEVFQKASKTLEKYGKSGMKVNGHEVRAVRNTIQKTGVAEIQDLTISKKTENKNL 254
           K      + ++      +      ++   E        Q+       D  I  +      
Sbjct: 121 KKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEA 180

Query: 255 RDESKTEGQRD 265
           + +       +
Sbjct: 181 KHDKYMADMDE 191

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score =  122 bits (308), Expect = 3e-34
 Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 8/127 (6%)

Query: 83  DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCT 141
            A  EKELGN+ +K+K F  A+  Y ++  L PT      N+A  Y +   + +  + C 
Sbjct: 3   QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCE 62

Query: 142 EALNLD-------DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV 194
           +A+ +         +  KAY+R   +  +  K K++I     +L        +KK     
Sbjct: 63  KAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAE 122

Query: 195 KSLYEKE 201
           K L E+E
Sbjct: 123 KILKEQE 129

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score =  121 bits (306), Expect = 4e-34
 Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 8/121 (6%)

Query: 77  NEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQE 135
           +   T  A +EK+LGN  +KQK F++A   Y ++I L P+    Y N+A  Y + ++F E
Sbjct: 1   SNAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAE 60

Query: 136 AEDDCTEALNLD-------DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK 188
               C +A+ +            KA SR   A ++   L  +++    +L      + +K
Sbjct: 61  CVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVK 120

Query: 189 K 189
           K
Sbjct: 121 K 121

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score =  121 bits (305), Expect = 2e-33
 Identities = 42/158 (26%), Positives = 64/158 (40%), Gaps = 19/158 (12%)

Query: 74  SLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----------------- 116
           S   ++      + ++ GNE F QK +KEAID Y  ++    T                 
Sbjct: 1   SNAEDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDR 60

Query: 117 --AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDS 174
                YAN +  YL +    EAE+  +E L  ++   KA  RRA AR    KL E+ ED 
Sbjct: 61  KNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDL 120

Query: 175 EFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEK 212
           +  LR  P    +  +  ++ +    E    +  T  K
Sbjct: 121 KLLLRNHPAAASVVAREMKIVTERRAEKKADSRVTYSK 158

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score =  127 bits (322), Expect = 3e-33
 Identities = 44/129 (34%), Positives = 76/129 (58%), Gaps = 1/129 (0%)

Query: 84  ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTE 142
           A   K   N+ FK K ++ AI  YS++I L+P+ A+ Y NR++AYL+   +  A  D T 
Sbjct: 6   AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 65

Query: 143 ALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEV 202
           A+ LD +YIK Y RRA +   LGK + ++ D E  ++++P +++ K +  E   + +++ 
Sbjct: 66  AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA 125

Query: 203 FQKASKTLE 211
           F++A    E
Sbjct: 126 FERAIAGDE 134

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score =  116 bits (292), Expect = 3e-32
 Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 3/110 (2%)

Query: 82  PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDC 140
                +KE GN  FKQ  ++EA+ CY + I   P   V Y+N+AMA +KL  + +A   C
Sbjct: 2   SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMC 61

Query: 141 TEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALR-LEPQNQEIKK 189
            + L           R     + L   + ++   +  +  ++   +   +
Sbjct: 62  QQGLRYTSTAEHVAIRSKLQYR-LELAQGAVGSVQIPVVEVDELPEGYDR 110

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score =  118 bits (297), Expect = 7e-32
 Identities = 36/152 (23%), Positives = 56/152 (36%), Gaps = 23/152 (15%)

Query: 77  NEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-----------------AVA 119
           +EE    A   KE GNE FK+ +  EAI  Y  ++                         
Sbjct: 31  DEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC 90

Query: 120 YANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALR 179
             N A  Y K + + +A D  ++ L +D   +KA  +   A    G L+E+ E+   A  
Sbjct: 91  NLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150

Query: 180 LEPQNQEIKKQLAEVKSLY------EKEVFQK 205
           L P N +I+       +        +K  F  
Sbjct: 151 LNPNNLDIRNSYELCVNKLKEARKKDKLTFGG 182

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score =  118 bits (296), Expect = 1e-30
 Identities = 43/170 (25%), Positives = 71/170 (41%), Gaps = 22/170 (12%)

Query: 72  SSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT--------------- 116
           S  + +EE    +T  KE G   FK+ K+K+A+  Y + ++                   
Sbjct: 135 SWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQAL 194

Query: 117 -AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSE 175
              ++ N AM +LKL+ F  A + C +AL LD    K  SRR  A   +   + +  D +
Sbjct: 195 RLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQ 254

Query: 176 FALRLEPQNQEIKKQLAEVKSLY------EKEVFQKASKTLEKYGKSGMK 219
             L+L P N+  K QLA  +         EK+++    + L +       
Sbjct: 255 KVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLAEEENKAKA 304

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score =  113 bits (284), Expect = 2e-29
 Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 1/120 (0%)

Query: 83  DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCT 141
            A   +  G E F +  +  A+  Y+  I  +P  A  Y+NRA A  KL  F EA  DC 
Sbjct: 138 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCN 197

Query: 142 EALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKE 201
           +A+  D  +++AY R+ATA+  + +   ++E  + A   + +           +  Y+  
Sbjct: 198 KAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 257

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score =  101 bits (254), Expect = 4e-25
 Identities = 21/103 (20%), Positives = 42/103 (40%)

Query: 84  ATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEA 143
           A  EK  GN+ +K ++F EAI+ Y+++  L        NRA A  +   ++ A     +A
Sbjct: 5   ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDA 64

Query: 144 LNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186
           +         Y   + +   +G     + D +  +    ++  
Sbjct: 65  VEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT 107

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 82.2 bits (204), Expect = 4e-18
 Identities = 15/126 (11%), Positives = 45/126 (35%), Gaps = 4/126 (3%)

Query: 82  PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDC 140
            D T         +++ +++ AI   + ++         Y   + ++ ++        D 
Sbjct: 36  KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDL 95

Query: 141 TEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEK 200
            + +    + +  + R A    +L   ++ ++ +E    + P+  E  +     K  + K
Sbjct: 96  KKTIEYYQKSLTEH-RTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEG--KEYFTK 152

Query: 201 EVFQKA 206
             +  A
Sbjct: 153 SDWPNA 158

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 75.3 bits (186), Expect = 8e-16
 Identities = 6/95 (6%), Positives = 25/95 (26%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR 149
           +     +       +    ++I     ++     A    KLR  ++          ++  
Sbjct: 78  ISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPE 137

Query: 150 YIKAYSRRATARKELGKLKESIEDSEFALRLEPQN 184
             +                 +++     ++  P++
Sbjct: 138 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED 172

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 69.9 bits (172), Expect = 7e-14
 Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 1/80 (1%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
                 K   F EAI   +++I   P    AY  +A A + ++ +  A +    A   D 
Sbjct: 179 RAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDA 238

Query: 149 RYIKAYSRRATARKELGKLK 168
                 S R   +      +
Sbjct: 239 EVNNGSSAREIDQLYYKASQ 258

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  115 bits (290), Expect = 1e-28
 Identities = 33/130 (25%), Positives = 64/130 (49%), Gaps = 1/130 (0%)

Query: 84  ATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEA 143
           A + K+ GN+ F+ KK+ +AI  Y+ ++ L    V Y+N +  Y+ +   ++  +  T+A
Sbjct: 6   ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKA 65

Query: 144 LNLDDRYIKAYSRRATARKELGKLKESIED-SEFALRLEPQNQEIKKQLAEVKSLYEKEV 202
           L L   Y K   RRA+A + LGK  +++ D S  +L  +  +  I+  L    +      
Sbjct: 66  LELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSK 125

Query: 203 FQKASKTLEK 212
            ++    ++ 
Sbjct: 126 LKEKFGDIDT 135

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  103 bits (258), Expect = 2e-24
 Identities = 35/218 (16%), Positives = 77/218 (35%), Gaps = 11/218 (5%)

Query: 2   AKHNRDQALDFQGFLN---DLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSG 58
            + ++ + L     +     +   +L+    D+  +      + L +   +S +    + 
Sbjct: 150 ERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKAD 209

Query: 59  NSYSR---NYDPVSHISSSLMNEESTPD-ATSEKELGNECFKQKKFKEAIDCYSRSIALS 114
            S+++    ++    +  +  +E+     A S +  G   F +     A +   ++I L 
Sbjct: 210 ESFTKAARLFEEQ--LDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF 267

Query: 115 PTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDS 174
           P   +Y   A+         E  +   +AL LD      Y  R      L    ++ +D 
Sbjct: 268 PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDF 327

Query: 175 EFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEK 212
           + A  L+P+N     QLA +   Y +  F        +
Sbjct: 328 DKAKELDPENIFPYIQLACL--AYRENKFDDCETLFSE 363

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 89.4 bits (222), Expect = 1e-19
 Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 3/132 (2%)

Query: 82  PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDC 140
           P   S   +      +    E  + + +++ L    +  Y +R      L+ + +A  D 
Sbjct: 268 PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDF 327

Query: 141 TEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEK 200
            +A  LD   I  Y + A       K  +       A R  P+  E+    AE+  L +K
Sbjct: 328 DKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEI--LTDK 385

Query: 201 EVFQKASKTLEK 212
             F KA K  + 
Sbjct: 386 NDFDKALKQYDL 397

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 89.0 bits (221), Expect = 2e-19
 Identities = 24/127 (18%), Positives = 41/127 (32%), Gaps = 14/127 (11%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLK---------LRRFQEAEDD 139
                  +  F +A+  Y  +I L       Y   A    K         +  F EA + 
Sbjct: 378 FAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNL 437

Query: 140 CTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYE 199
             +A  LD R  +A    A  + +   + E+I   E +  L    +E  + +       E
Sbjct: 438 LEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAIT----FAE 493

Query: 200 KEVFQKA 206
               Q+ 
Sbjct: 494 AAKVQQR 500

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 87.5 bits (217), Expect = 4e-19
 Identities = 21/127 (16%), Positives = 46/127 (36%), Gaps = 4/127 (3%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
            G   F  + + +A   + ++  L P     Y   A    +  +F + E   +EA     
Sbjct: 310 RGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP 369

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASK 208
              +  +  A    +     ++++  + A+ LE +   I   +A    L  K      + 
Sbjct: 370 EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIA---PLVGKATLLTRNP 426

Query: 209 TLEKYGK 215
           T+E + +
Sbjct: 427 TVENFIE 433

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 57.4 bits (139), Expect = 3e-09
 Identities = 17/91 (18%), Positives = 29/91 (31%), Gaps = 3/91 (3%)

Query: 84  ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTE 142
              +  L       + F EA +   ++  L P    A    A   L+     EA     E
Sbjct: 415 LVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEE 474

Query: 143 ALNLDDRYIKAYSRRATARKELGKLKESIED 173
           + +L     +     A    E  K+++ I  
Sbjct: 475 SADLARTMEEKLQ--AITFAEAAKVQQRIRS 503

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  110 bits (278), Expect = 1e-27
 Identities = 28/134 (20%), Positives = 56/134 (41%), Gaps = 1/134 (0%)

Query: 83  DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCT 141
           D     ELG +     +  +A+  +  ++   P   +AY  RA  +L + + + A  D T
Sbjct: 2   DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLT 61

Query: 142 EALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKE 201
           + + L   +  A  +R     + GKL E+ +D +  L+  P  QE K+  +++    E +
Sbjct: 62  KVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQ 121

Query: 202 VFQKASKTLEKYGK 215
             +  +        
Sbjct: 122 RLRSQALDAFDGAD 135

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  106 bits (267), Expect = 3e-26
 Identities = 24/120 (20%), Positives = 47/120 (39%), Gaps = 5/120 (4%)

Query: 86  SEKELGNECFKQKKFKEAIDCYSRSIALSPT-----AVAYANRAMAYLKLRRFQEAEDDC 140
              E   E  +  ++ +A   Y   +   P+       +       + K  +  EA   C
Sbjct: 236 KLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRIC 295

Query: 141 TEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEK 200
           +E L ++   + A   RA A        E+I+D E A      +Q+I++ L + + L ++
Sbjct: 296 SEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ 355

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 88.5 bits (220), Expect = 8e-20
 Identities = 22/126 (17%), Positives = 47/126 (37%), Gaps = 1/126 (0%)

Query: 89  ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD 147
               + F    +  AI    + + +    A     RA  ++K    ++A  D   A  L 
Sbjct: 125 SQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK 184

Query: 148 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKAS 207
               +A+ + +T   +LG  + S+ +    L+L+  ++       +VK L +     +  
Sbjct: 185 SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEEL 244

Query: 208 KTLEKY 213
               +Y
Sbjct: 245 IRDGRY 250

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 76.5 bits (189), Expect = 1e-15
 Identities = 21/139 (15%), Positives = 50/139 (35%), Gaps = 18/139 (12%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSP----------------TAVAYANRAMAYLKLRRF 133
            G+   KQ K  EA D + + +  +P                      ++A+       +
Sbjct: 77  RGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADY 136

Query: 134 QEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAE 193
             A     + L +     +    RA    + G+ +++I D + A +L+  N E   +++ 
Sbjct: 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKIST 196

Query: 194 VKSLYEKEVFQKASKTLEK 212
           +   Y+    + +   + +
Sbjct: 197 L--YYQLGDHELSLSEVRE 213

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 71.9 bits (177), Expect = 3e-14
 Identities = 17/115 (14%), Positives = 39/115 (33%), Gaps = 13/115 (11%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
                 K+ + ++AI     +  L      A+   +  Y +L   + +  +  E L LD 
Sbjct: 160 RAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 219

Query: 149 RYIKAYSRRATARK------------ELGKLKESIEDSEFALRLEPQNQEIKKQL 191
            + + ++     +K              G+  ++    E  ++ EP   E   + 
Sbjct: 220 DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRS 274

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  112 bits (281), Expect = 1e-27
 Identities = 29/139 (20%), Positives = 58/139 (41%), Gaps = 1/139 (0%)

Query: 78  EESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEA 136
            +S  D     ELG +     +  +A+  +  ++   P   +AY  RA  +L + + + A
Sbjct: 20  FQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAA 79

Query: 137 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS 196
             D T+ + L   +  A  +R     + GKL E+ +D +  L+  P   E K+  +++  
Sbjct: 80  LPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIK 139

Query: 197 LYEKEVFQKASKTLEKYGK 215
             E +  +  +      G 
Sbjct: 140 SDEMQRLRSQALNAFGSGD 158

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  102 bits (256), Expect = 3e-24
 Identities = 26/129 (20%), Positives = 50/129 (38%), Gaps = 5/129 (3%)

Query: 88  KELGNECFKQKKFKEAIDCYSRSIALSPT-----AVAYANRAMAYLKLRRFQEAEDDCTE 142
            E   E  +  ++ +A   Y   +   P+       +       + K  +  EA   C+E
Sbjct: 261 IESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSE 320

Query: 143 ALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEV 202
            L ++   + A   RA A        E+I+D E A      +Q+I++ L + + L ++  
Sbjct: 321 VLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQ 380

Query: 203 FQKASKTLE 211
            +   K L 
Sbjct: 381 KRDYYKILG 389

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 87.0 bits (216), Expect = 6e-19
 Identities = 22/126 (17%), Positives = 47/126 (37%), Gaps = 1/126 (0%)

Query: 89  ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD 147
                 F    +  AI    + + +    A     RA  ++K    ++A  D   A  L 
Sbjct: 148 SQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK 207

Query: 148 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKAS 207
           +   +A+ + +T   +LG  + S+ +    L+L+  ++       +VK L +     +  
Sbjct: 208 NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEEL 267

Query: 208 KTLEKY 213
               +Y
Sbjct: 268 IRDGRY 273

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 76.6 bits (189), Expect = 1e-15
 Identities = 21/139 (15%), Positives = 50/139 (35%), Gaps = 18/139 (12%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSP----------------TAVAYANRAMAYLKLRRF 133
            G+   KQ K  EA D + + +  +P                      ++A+       +
Sbjct: 100 RGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDY 159

Query: 134 QEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAE 193
             A     + L +     +    RA    + G+ +++I D + A +L+  N E   +++ 
Sbjct: 160 TAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKIST 219

Query: 194 VKSLYEKEVFQKASKTLEK 212
           +   Y+    + +   + +
Sbjct: 220 L--YYQLGDHELSLSEVRE 236

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 75.9 bits (187), Expect = 3e-15
 Identities = 22/127 (17%), Positives = 44/127 (34%), Gaps = 12/127 (9%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR 149
            G +   +  + +++               +       L   +  +A      A++ D  
Sbjct: 9   SGVDLGTENLYFQSMADVE----------KHLELGKKLLAAGQLADALSQFHAAVDGDPD 58

Query: 150 YIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKT 209
              AY RRAT    +GK K ++ D    ++L+      + Q      L ++    +A   
Sbjct: 59  NYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRG--HLLLKQGKLDEAEDD 116

Query: 210 LEKYGKS 216
            +K  KS
Sbjct: 117 FKKVLKS 123

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 74.7 bits (184), Expect = 6e-15
 Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 1/101 (0%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           + +   K +K  EAI   S  + + P    A  +RA AYL    + EA  D   A   ++
Sbjct: 301 ICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNE 360

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKK 189
              +       A++ L + ++        ++   + QEI K
Sbjct: 361 NDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIK 401

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 72.4 bits (178), Expect = 4e-14
 Identities = 19/140 (13%), Positives = 47/140 (33%), Gaps = 19/140 (13%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANR------------AMAYLKLRRFQEA 136
           +    ++    + ++      + L       +A+             A   ++  R+ +A
Sbjct: 217 ISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDA 276

Query: 137 EDDCTEALNLD----DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLA 192
                  +  +    +  +++  R      +  K  E+I      L++EP N    K  A
Sbjct: 277 TSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRA 336

Query: 193 EVKSLYEKEVFQKASKTLEK 212
           E      +E++ +A +  E 
Sbjct: 337 EA--YLIEEMYDEAIQDYET 354

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score =  107 bits (269), Expect = 1e-26
 Identities = 41/164 (25%), Positives = 72/164 (43%), Gaps = 24/164 (14%)

Query: 77  NEESTPDATSEKELGNECFKQKKFKEAIDCYSRSI------------------ALSPTAV 118
            EE    A   K  GN  FK++K +EA+  Y  +I                  AL+    
Sbjct: 172 VEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNP 231

Query: 119 AYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFAL 178
            + N A   +KL+R+ EA   C   L  +++  KA  RR  A+ ELG++  + +D   A 
Sbjct: 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQ 291

Query: 179 RLEPQNQEIKKQLAEVKSLY------EKEVFQKASKTLEKYGKS 216
           +  P ++ I+++L  +          +KE+++   K  ++ G  
Sbjct: 292 KYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGAK 335

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  100 bits (252), Expect = 1e-23
 Identities = 38/150 (25%), Positives = 62/150 (41%), Gaps = 3/150 (2%)

Query: 76  MNEESTPD-ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRF 133
           ++       A   K  GN  F  K F EAI  Y  +I L P   V Y+N +  Y+     
Sbjct: 16  LSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDL 75

Query: 134 QEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIED-SEFALRLEPQNQEIKKQLA 192
           ++  +  T+AL +   + KA  RRA+A + LG   +++ D S  +L  +     I+  L 
Sbjct: 76  EKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLE 135

Query: 193 EVKSLYEKEVFQKASKTLEKYGKSGMKVNG 222
              +    +V  +     E  G   +  N 
Sbjct: 136 RNLNKQAMKVLNENLSKDEGRGSQVLPSNT 165

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 98.6 bits (246), Expect = 9e-23
 Identities = 32/130 (24%), Positives = 50/130 (38%), Gaps = 2/130 (1%)

Query: 83  DATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTE 142
            A +    G   F +    +A      SI L PT  +Y   A+        QE      +
Sbjct: 242 AALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQK 301

Query: 143 ALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEV 202
           A++L+  Y   Y  R      L   K + ED + A  L P+N     QLA +  LY++  
Sbjct: 302 AVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACL--LYKQGK 359

Query: 203 FQKASKTLEK 212
           F ++     +
Sbjct: 360 FTESEAFFNE 369

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 91.3 bits (227), Expect = 2e-20
 Identities = 28/132 (21%), Positives = 53/132 (40%), Gaps = 3/132 (2%)

Query: 82  PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDC 140
           P   S   L      ++  +E    + +++ L+P     Y +R   Y  L+ ++ A++D 
Sbjct: 274 PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDF 333

Query: 141 TEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEK 200
            +A +L+   +  Y + A    + GK  ES           P   E+    AE+  L ++
Sbjct: 334 QKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEI--LTDR 391

Query: 201 EVFQKASKTLEK 212
             F  A K  + 
Sbjct: 392 GDFDTAIKQYDI 403

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 82.8 bits (205), Expect = 2e-17
 Identities = 28/138 (20%), Positives = 52/138 (37%), Gaps = 15/138 (10%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
            G   F  + +K A + + ++ +L+P     Y   A    K  +F E+E    E      
Sbjct: 316 RGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP 375

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI--------------KKQLAEV 194
              +  +  A    + G    +I+  + A RLE   ++I               +Q ++ 
Sbjct: 376 TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQD 435

Query: 195 KSLYEKEVFQKASKTLEK 212
            +  ++E F  A K L K
Sbjct: 436 PTQLDEEKFNAAIKLLTK 453

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 82.5 bits (204), Expect = 2e-17
 Identities = 25/141 (17%), Positives = 39/141 (27%), Gaps = 21/141 (14%)

Query: 83  DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLK------------ 129
                         +  F  AI  Y  +  L       +        K            
Sbjct: 377 LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDP 436

Query: 130 ----LRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ 185
                 +F  A    T+A  LD R  +A    A  + ++ K+ E+IE  E +  L     
Sbjct: 437 TQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMD 496

Query: 186 EIKKQLAEVKSLYEKEVFQKA 206
           E  +      +  E    QK 
Sbjct: 497 EKLQAT----TFAEAAKIQKR 513

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 73.6 bits (181), Expect = 2e-14
 Identities = 28/161 (17%), Positives = 51/161 (31%), Gaps = 7/161 (4%)

Query: 99  KFKEAIDCYSRSIALSPT-----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKA 153
                    ++   LSP+     AV   NR   +   + F EA      A+ LD      
Sbjct: 2   SHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVF 61

Query: 154 YSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEKY 213
           YS  +      G L++ IE +  AL ++P + +   + A          F  A   L   
Sbjct: 62  YSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASA--NESLGNFTDAMFDLSVL 119

Query: 214 GKSGMKVNGHEVRAVRNTIQKTGVAEIQDLTISKKTENKNL 254
             +G          +   + K  +  + +     +     +
Sbjct: 120 SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQV 160

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 51.3 bits (123), Expect = 3e-07
 Identities = 16/120 (13%), Positives = 31/120 (25%), Gaps = 6/120 (5%)

Query: 96  KQKKFKEAIDCYSRSIALSPT---AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIK 152
               +  A    S ++    +           +       +       T    L +    
Sbjct: 185 TSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAAL 244

Query: 153 AYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEK 212
           A             L ++    + ++ L P        LA    L +KE  Q+  K  +K
Sbjct: 245 ALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIF-LALT--LADKENSQEFFKFFQK 301

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 15/111 (13%), Positives = 28/111 (25%), Gaps = 26/111 (23%)

Query: 83  DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCT 141
               +         ++KF  AI   +++  L P    A    A   L++ +  EA +   
Sbjct: 427 ILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFE 486

Query: 142 EALNL-------------------------DDRYIKAYSRRATARKELGKL 167
           ++  L                         D              +  G L
Sbjct: 487 DSAILARTMDEKLQATTFAEAAKIQKRLRADPIISAKMELTLARYRAKGML 537

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score =  100 bits (249), Expect = 2e-23
 Identities = 45/214 (21%), Positives = 81/214 (37%), Gaps = 35/214 (16%)

Query: 72  SSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSI----------------ALSP 115
           S  +  +E    A   KE G   FK  K+ +A+  Y + +                + S 
Sbjct: 256 SWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESF 315

Query: 116 TAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSE 175
              A+ N AM YLKLR + +A + C +AL LD    K   RR  A+  + + + +  D E
Sbjct: 316 LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFE 375

Query: 176 FALRLEPQNQEIKKQLAEVKSLY------EKEVFQKASKTLEKYGKSGMKVNGHEVRAVR 229
             L + PQN+  + Q++  +         ++ ++    K   +                +
Sbjct: 376 KVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFKKFAEQDA-------------K 422

Query: 230 NTIQKTGVAEIQDLTISKKTENKNLRDESKTEGQ 263
               K    +  +   ++K  +    +E K EG 
Sbjct: 423 EEANKAMGKKTSEGVTNEKGTDSQAMEEEKPEGH 456

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 94.4 bits (235), Expect = 8e-22
 Identities = 38/145 (26%), Positives = 65/145 (44%), Gaps = 23/145 (15%)

Query: 84  ATSEKELGNECFKQKKFKEAIDCYSRSI----------------ALSPTAVA-YANRAMA 126
           +   K +GN  FK + ++ AI  Y++ +                 L P A++   N    
Sbjct: 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGAC 282

Query: 127 YLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186
            LK+  +Q A D C EAL +D    KA  RRA   + L +  +++ D + A  + P+++ 
Sbjct: 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKA 342

Query: 187 IKKQLAEVKSLY------EKEVFQK 205
           I+ +L +VK         EK  + K
Sbjct: 343 IQAELLKVKQKIKAQKDKEKAAYAK 367

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 90.7 bits (226), Expect = 2e-20
 Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 1/106 (0%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           L N   ++    EA DCY+ ++ L PT A +  N A    +    +EA     +AL +  
Sbjct: 277 LANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP 336

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV 194
            +  A+S  A+  ++ GKL+E++   + A+R+ P   +    +   
Sbjct: 337 EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 382

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 89.1 bits (222), Expect = 6e-20
 Identities = 35/124 (28%), Positives = 55/124 (44%), Gaps = 3/124 (2%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           L    ++Q     AID Y R+I L P    AY N A A  +     EAED    AL L  
Sbjct: 243 LACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP 302

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASK 208
            +  + +  A  ++E G ++E++     AL + P+       LA V  L ++   Q+A  
Sbjct: 303 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASV--LQQQGKLQEALM 360

Query: 209 TLEK 212
             ++
Sbjct: 361 HYKE 364

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 88.8 bits (221), Expect = 8e-20
 Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 3/124 (2%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           LGN   + + F  A+  Y R+++LSP  AV + N A  Y +      A D    A+ L  
Sbjct: 209 LGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP 268

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASK 208
            +  AY   A A KE G + E+ +    ALRL P + +    LA +    E+   ++A +
Sbjct: 269 HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI--KREQGNIEEAVR 326

Query: 209 TLEK 212
              K
Sbjct: 327 LYRK 330

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 88.8 bits (221), Expect = 8e-20
 Identities = 27/124 (21%), Positives = 51/124 (41%), Gaps = 3/124 (2%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           L +  F+ ++   +    + +I  +P  A AY+N    Y +  + QEA +    AL L  
Sbjct: 39  LSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKP 98

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASK 208
            +I  Y   A A    G ++ +++    AL+  P    ++  L  +  L      ++A  
Sbjct: 99  DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNL--LKALGRLEEAKA 156

Query: 209 TLEK 212
              K
Sbjct: 157 CYLK 160

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 88.8 bits (221), Expect = 1e-19
 Identities = 32/124 (25%), Positives = 50/124 (40%), Gaps = 3/124 (2%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           LGN      + +EA  CY ++I   P  AVA++N    +        A     +A+ LD 
Sbjct: 141 LGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP 200

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASK 208
            ++ AY       KE      ++     AL L P +  +   LA V   YE+ +   A  
Sbjct: 201 NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACV--YYEQGLIDLAID 258

Query: 209 TLEK 212
           T  +
Sbjct: 259 TYRR 262

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 86.8 bits (216), Expect = 4e-19
 Identities = 23/124 (18%), Positives = 45/124 (36%), Gaps = 3/124 (2%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           L          + A+  Y  ++  +P      ++       L R +EA+    +A+    
Sbjct: 107 LAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP 166

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASK 208
            +  A+S         G++  +I   E A+ L+P   +    L  V  L E  +F +A  
Sbjct: 167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNV--LKEARIFDRAVA 224

Query: 209 TLEK 212
              +
Sbjct: 225 AYLR 228

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 86.4 bits (215), Expect = 6e-19
 Identities = 29/118 (24%), Positives = 45/118 (38%), Gaps = 3/118 (2%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           LG     Q +   AI  + +++ L P    AY N      + R F  A      AL+L  
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKA 206
            +   +   A    E G +  +I+    A+ L+P   +    LA    L EK    +A
Sbjct: 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANA--LKEKGSVAEA 290

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 86.1 bits (214), Expect = 7e-19
 Identities = 29/124 (23%), Positives = 45/124 (36%), Gaps = 3/124 (2%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           LGN   ++ + +EAI+ Y  ++ L P     Y N A A +     + A      AL  + 
Sbjct: 73  LGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP 132

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASK 208
                 S      K LG+L+E+      A+  +P        L  V     +     A  
Sbjct: 133 DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCV--FNAQGEIWLAIH 190

Query: 209 TLEK 212
             EK
Sbjct: 191 HFEK 194

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 80.7 bits (200), Expect = 5e-17
 Identities = 28/125 (22%), Positives = 47/125 (37%), Gaps = 3/125 (2%)

Query: 89  ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD 147
           EL +  ++   F+ A     +     P         +  + + RR   +    T A+  +
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63

Query: 148 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKAS 207
               +AYS      KE G+L+E+IE    ALRL+P   +    LA    L      + A 
Sbjct: 64  PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAA--LVAAGDMEGAV 121

Query: 208 KTLEK 212
           +    
Sbjct: 122 QAYVS 126

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 69.9 bits (172), Expect = 2e-13
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 1/77 (1%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           L N   +Q   +EA+  Y +++ + P  A A++N A    +  + QEA     EA+ +  
Sbjct: 311 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370

Query: 149 RYIKAYSRRATARKELG 165
            +  AYS      KE+ 
Sbjct: 371 TFADAYSNMGNTLKEMQ 387

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 59.5 bits (145), Expect = 6e-10
 Identities = 16/93 (17%), Positives = 29/93 (31%), Gaps = 2/93 (2%)

Query: 120 YANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALR 179
               A    +   F+ AE  C +    +          ++   +  +L  S   S  A++
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61

Query: 180 LEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEK 212
             P   E    L  V    E+   Q+A +    
Sbjct: 62  QNPLLAEAYSNLGNV--YKERGQLQEAIEHYRH 92

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 84.4 bits (210), Expect = 3e-20
 Identities = 21/98 (21%), Positives = 44/98 (44%), Gaps = 3/98 (3%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNL-- 146
            G   +    + E+ID + ++I L P  +  +  +  A   L R++EA D     +N+  
Sbjct: 12  EGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE 71

Query: 147 DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN 184
           D+     ++ +A A + +   +   E +E   +LE  +
Sbjct: 72  DEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 58.6 bits (143), Expect = 4e-11
 Identities = 10/66 (15%), Positives = 25/66 (37%)

Query: 117 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEF 176
              Y    +       + E+ D   +A+ LD    K +  +  A   L + +E+++   +
Sbjct: 6   PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNY 65

Query: 177 ALRLEP 182
            + +  
Sbjct: 66  VINVIE 71

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 86.4 bits (215), Expect = 8e-20
 Identities = 22/124 (17%), Positives = 46/124 (37%), Gaps = 3/124 (2%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
            GN    ++ +KEA D + +++         +       +KL + + A      A+ L++
Sbjct: 97  AGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE 156

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASK 208
              +A  +        G L E++         +P + +             KE  +KA +
Sbjct: 157 NDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVT--YAYKENREKALE 214

Query: 209 TLEK 212
            L+K
Sbjct: 215 MLDK 218

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 85.6 bits (213), Expect = 2e-19
 Identities = 22/124 (17%), Positives = 46/124 (37%), Gaps = 3/124 (2%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
             N      + + A+  Y +++ L  + A AY      Y+    ++EA+D   +AL    
Sbjct: 63  FANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGM 122

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASK 208
                +    T   +L + K ++   + A+ L   + E + Q      L  + +  +A  
Sbjct: 123 ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMC--LANEGMLDEALS 180

Query: 209 TLEK 212
               
Sbjct: 181 QFAA 184

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 85.3 bits (212), Expect = 2e-19
 Identities = 16/98 (16%), Positives = 33/98 (33%), Gaps = 1/98 (1%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           LG    K ++ K A+    R++ L+     A     M         EA          D 
Sbjct: 131 LGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDP 190

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186
            +  A+             ++++E  + A+ ++P +  
Sbjct: 191 GHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHML 228

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 84.5 bits (210), Expect = 4e-19
 Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 1/98 (1%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
                 +   +++A + ++++I  +   A+ Y N A     +   + A     +AL LD 
Sbjct: 29  QMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDS 88

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186
               AY             KE+ +  E ALR   +N +
Sbjct: 89  SAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGD 126

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 70.2 bits (173), Expect = 5e-14
 Identities = 11/78 (14%), Positives = 27/78 (34%), Gaps = 1/78 (1%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
            G     +    EA+  ++      P  A A+ N  + Y      ++A +   +A+++  
Sbjct: 165 FGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224

Query: 149 RYIKAYSRRATARKELGK 166
            ++ A   +         
Sbjct: 225 DHMLALHAKKLLGHHHHH 242

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 65.2 bits (160), Expect = 2e-12
 Identities = 16/116 (13%), Positives = 40/116 (34%), Gaps = 4/116 (3%)

Query: 97  QKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSR 156
                 +     R   ++   +    +     +   +++A +  T+A+  +      Y  
Sbjct: 5   HHHHHHSSGLVPRGSHMAS--MTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYIN 62

Query: 157 RATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEK 212
            A     + +L+ ++   + AL L+            V     KE++++A    EK
Sbjct: 63  FANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV--YVVKEMYKEAKDMFEK 116

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 82.4 bits (205), Expect = 2e-19
 Identities = 34/96 (35%), Positives = 53/96 (55%), Gaps = 1/96 (1%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           LGN  +KQ  + EAI+ Y +++ L P +A A+ N   AY K   + EA +   +AL LD 
Sbjct: 41  LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 100

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN 184
           R  +A+     A  + G   E+IE  + AL L+P++
Sbjct: 101 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 81.3 bits (202), Expect = 5e-19
 Identities = 35/98 (35%), Positives = 53/98 (54%), Gaps = 1/98 (1%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           LGN  +KQ  + EAI+ Y +++ L P  A A+ N   AY K   + EA +   +AL LD 
Sbjct: 7   LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 66

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186
           R  +A+     A  + G   E+IE  + AL L+P++ E
Sbjct: 67  RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE 104

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 57.0 bits (139), Expect = 3e-10
 Identities = 24/70 (34%), Positives = 36/70 (51%)

Query: 117 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEF 176
           A A+ N   AY K   + EA +   +AL LD R  +A+     A  + G   E+IE  + 
Sbjct: 1   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60

Query: 177 ALRLEPQNQE 186
           AL L+P++ E
Sbjct: 61  ALELDPRSAE 70

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 81.7 bits (203), Expect = 3e-19
 Identities = 35/98 (35%), Positives = 51/98 (52%), Gaps = 1/98 (1%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           LGN  +KQ  + EAI+ Y +++ L P  A A+ N   AY K   + EA +   +AL LD 
Sbjct: 15  LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186
              +A+     A  + G   E+IE  + AL L+P N E
Sbjct: 75  NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE 112

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 67.4 bits (166), Expect = 4e-14
 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 1/77 (1%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           LGN  +KQ  + EAI+ Y +++ L P  A A+ N   AY K   + EA +   +AL LD 
Sbjct: 49  LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 108

Query: 149 RYIKAYSRRATARKELG 165
              +A      A+++ G
Sbjct: 109 NNAEAKQNLGNAKQKQG 125

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 57.8 bits (141), Expect = 1e-10
 Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 2/77 (2%)

Query: 112 ALSPT--AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKE 169
           A+ P   A A+ N   AY K   + EA +   +AL LD    +A+     A  + G   E
Sbjct: 2   AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 61

Query: 170 SIEDSEFALRLEPQNQE 186
           +IE  + AL L+P N E
Sbjct: 62  AIEYYQKALELDPNNAE 78

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 82.5 bits (205), Expect = 7e-19
 Identities = 22/124 (17%), Positives = 46/124 (37%), Gaps = 3/124 (2%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           LG    K        +   RS+A +P          + Y++++++  A     +    + 
Sbjct: 48  LGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANP 107

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASK 208
                  R   A   LG+  E+I+  + AL L P   ++ + +A      +    ++A  
Sbjct: 108 INFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFS--YEQMGRHEEALP 165

Query: 209 TLEK 212
             +K
Sbjct: 166 HFKK 169

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 81.3 bits (202), Expect = 2e-18
 Identities = 21/98 (21%), Positives = 39/98 (39%), Gaps = 1/98 (1%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           LG    + +K+  A+    +    +P          +A   L RF EA D    AL L  
Sbjct: 82  LGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP 141

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186
              K +   A + +++G+ +E++   + A  L+     
Sbjct: 142 NEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASV 179

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 81.3 bits (202), Expect = 2e-18
 Identities = 11/98 (11%), Positives = 27/98 (27%), Gaps = 1/98 (1%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
            G    K  ++ +A+    +             +  +AY+K        +    +L    
Sbjct: 14  KGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP 73

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186
             +K  +       ++ K   ++          P N  
Sbjct: 74  DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFN 111

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 59.0 bits (144), Expect = 1e-10
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           LG       +F EAID +  ++ L P     +   A +Y ++ R +EA     +A  LD+
Sbjct: 116 LGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDE 175

Query: 149 RYIKAYS 155
                 +
Sbjct: 176 GASVELA 182

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 57.1 bits (139), Expect = 5e-10
 Identities = 13/70 (18%), Positives = 27/70 (38%)

Query: 117 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEF 176
            V Y ++ +++ K  R+ +A     +  + D   +        A  + G +    E  E 
Sbjct: 8   QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLER 67

Query: 177 ALRLEPQNQE 186
           +L   P N +
Sbjct: 68  SLADAPDNVK 77

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 83.4 bits (207), Expect = 7e-19
 Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 2/94 (2%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR 149
            G       +  +A     +++AL  T    +  A  YL + R  EA     +AL    +
Sbjct: 124 RGLVYALLGERDKAEASLKQALALEDTPEIRSALAELYLSMGRLDEALAQYAKALEQAPK 183

Query: 150 YIKAYSRRATARKELGKLKESIEDSEFALRLEPQ 183
            +    R A+A    GK +E+      AL     
Sbjct: 184 DLDLRVRYASALLLKGKAEEAAR--AAALEHHHH 215

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 78.7 bits (195), Expect = 3e-17
 Identities = 24/127 (18%), Positives = 54/127 (42%), Gaps = 4/127 (3%)

Query: 87  EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALN 145
            ++  +    +   ++A+     +  ++P  A  +  R + Y  L    +AE    +AL 
Sbjct: 87  YRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALA 146

Query: 146 LDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQK 205
           L+D   +  S  A     +G+L E++     AL   P++ +++ + A    L  K   ++
Sbjct: 147 LED-TPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASA--LLLKGKAEE 203

Query: 206 ASKTLEK 212
           A++    
Sbjct: 204 AARAAAL 210

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 74.9 bits (185), Expect = 7e-16
 Identities = 20/105 (19%), Positives = 37/105 (35%), Gaps = 12/105 (11%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR-----------RFQEAE 137
           L     K      A++     +A +P     Y   + AY+ L              ++A 
Sbjct: 45  LARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQAL 104

Query: 138 DDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEP 182
               +A  ++ RY   + +R      LG+  ++    + AL LE 
Sbjct: 105 SVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALED 149

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 74.5 bits (184), Expect = 9e-16
 Identities = 20/109 (18%), Positives = 42/109 (38%), Gaps = 12/109 (11%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           LG + +   ++  A+  + R++  +P    A    A   LKL     A ++    +    
Sbjct: 11  LGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP 70

Query: 149 RYIKAYSRRATA-----------RKELGKLKESIEDSEFALRLEPQNQE 186
           RY+  Y   + A            +  G L++++   + A R+ P+   
Sbjct: 71  RYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAP 119

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 54.8 bits (133), Expect = 6e-09
 Identities = 11/74 (14%), Positives = 26/74 (35%)

Query: 113 LSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIE 172
           +           +    L R+  A      AL  + +  +A    A  + +LG +  ++E
Sbjct: 1   MQTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALE 60

Query: 173 DSEFALRLEPQNQE 186
           + +  +   P+   
Sbjct: 61  NGKTLVARTPRYLG 74

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 83.5 bits (207), Expect = 1e-18
 Identities = 19/99 (19%), Positives = 36/99 (36%), Gaps = 1/99 (1%)

Query: 89  ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD 147
           E G           A + +S+++A+ P     +    +   +   F  A +     L LD
Sbjct: 48  ERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD 107

Query: 148 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186
             Y  A+  R  A    G+ K + +D     + +P +  
Sbjct: 108 PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPF 146

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 73.9 bits (182), Expect = 3e-15
 Identities = 20/138 (14%), Positives = 39/138 (28%), Gaps = 7/138 (5%)

Query: 80  STPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-----AVAYANRAMAYLKLRRFQ 134
           S       + L        + +  +    + +A         A     R + Y  L    
Sbjct: 1   SNTSWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRA 60

Query: 135 EAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV 194
            A +D ++AL +     + ++       + G    + E  +  L L+P            
Sbjct: 61  LARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA 120

Query: 195 KSLYEKEVFQKASKTLEK 212
             LY     + A   L  
Sbjct: 121 --LYYGGRDKLAQDDLLA 136

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 72.7 bits (179), Expect = 9e-15
 Identities = 22/125 (17%), Positives = 44/125 (35%), Gaps = 3/125 (2%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           LG    +   F  A + +   + L PT   A+ NR +A     R + A+DD       D 
Sbjct: 83  LGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP 142

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVK-SLYEKEVFQKAS 207
                      A ++L + K++ E  +       + Q     +     ++ E+ + ++  
Sbjct: 143 NDPFRSLWLYLAEQKLDE-KQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLK 201

Query: 208 KTLEK 212
                
Sbjct: 202 ADATD 206

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 68.9 bits (169), Expect = 2e-13
 Identities = 13/87 (14%), Positives = 29/87 (33%), Gaps = 2/87 (2%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           LGN   +Q   +      + + +L+   +         YL L     A      A+  + 
Sbjct: 188 LGN-ISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 246

Query: 149 RYIKAYSRRATARKELGKLKESIEDSE 175
                +         LG+ ++ + +S+
Sbjct: 247 HNFVEHRYALLELSLLGQDQDDLAESD 273

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 58.5 bits (142), Expect = 6e-10
 Identities = 11/97 (11%), Positives = 27/97 (27%), Gaps = 4/97 (4%)

Query: 94  CFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR---RFQEAEDDCTEALNLDDR 149
             ++   K+A +   +    S      +         +      +  + D T+  +L + 
Sbjct: 154 AEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEH 213

Query: 150 YIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186
             +           LG L  +    + A+     N  
Sbjct: 214 LSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 46.9 bits (112), Expect = 4e-06
 Identities = 7/54 (12%), Positives = 17/54 (31%), Gaps = 1/54 (1%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTE 142
           LG           A   +  ++A +    V +    +    L + Q+   +  +
Sbjct: 221 LGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESDQ 274

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 85.2 bits (211), Expect = 3e-18
 Identities = 19/125 (15%), Positives = 38/125 (30%), Gaps = 3/125 (2%)

Query: 89  ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD 147
             G      +  +  +    ++  L+P   VA A+       L   Q       +A  L 
Sbjct: 213 SNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 272

Query: 148 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKAS 207
            + + A +  +  ++ L  ++  +     A  L PQ                 E  Q+  
Sbjct: 273 PQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGG--KQALETVQRLL 330

Query: 208 KTLEK 212
             L +
Sbjct: 331 PVLCQ 335

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 84.0 bits (208), Expect = 6e-18
 Identities = 16/124 (12%), Positives = 32/124 (25%), Gaps = 3/124 (2%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
                   +  +  +    ++  L+P   VA A+       L   Q       +A  L  
Sbjct: 350 HDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 409

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASK 208
             + A +     ++ L  ++  +     A  L PQ                 E       
Sbjct: 410 EQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGG--RPALESIVAQLS 467

Query: 209 TLEK 212
             + 
Sbjct: 468 RPDP 471

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 83.3 bits (206), Expect = 1e-17
 Identities = 18/124 (14%), Positives = 36/124 (29%), Gaps = 3/124 (2%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
            G      +  +  +    ++  L+P   VA A+       L   Q       +A  L  
Sbjct: 316 NGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTP 375

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASK 208
             + A +     ++ L  ++  +     A  L P+                 E  Q+   
Sbjct: 376 EQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGG--KQALETVQRLLP 433

Query: 209 TLEK 212
            L +
Sbjct: 434 VLCQ 437

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 82.9 bits (205), Expect = 1e-17
 Identities = 19/124 (15%), Positives = 38/124 (30%), Gaps = 3/124 (2%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
            G      +  +  +    ++  L+P   VA A+ +     L   Q       +A  L  
Sbjct: 248 NGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTP 307

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASK 208
           + + A +     ++ L  ++  +     A  L PQ                 E  Q+   
Sbjct: 308 QQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGG--KQALETVQRLLP 365

Query: 209 TLEK 212
            L +
Sbjct: 366 VLCQ 369

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 82.1 bits (203), Expect = 3e-17
 Identities = 19/124 (15%), Positives = 38/124 (30%), Gaps = 3/124 (2%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
            G      +  +  +    ++  L+P   VA A+       L   Q       +A  L  
Sbjct: 180 NGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 239

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASK 208
           + + A +     ++ L  ++  +     A  L PQ        +        E  Q+   
Sbjct: 240 QQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGG--KQALETVQRLLP 297

Query: 209 TLEK 212
            L +
Sbjct: 298 VLCQ 301

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 81.3 bits (201), Expect = 5e-17
 Identities = 17/124 (13%), Positives = 36/124 (29%), Gaps = 3/124 (2%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
                   +  +  +    ++  L+P   VA A+       L   Q       +A  L  
Sbjct: 282 NSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 341

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASK 208
           + + A +     ++ L  ++  +     A  L P+                 E  Q+   
Sbjct: 342 QQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGG--KQALETVQRLLP 399

Query: 209 TLEK 212
            L +
Sbjct: 400 VLCQ 403

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 80.9 bits (200), Expect = 6e-17
 Identities = 14/93 (15%), Positives = 30/93 (32%), Gaps = 1/93 (1%)

Query: 96  KQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAY 154
             +  +  +    ++  L+P   VA A+       L   Q       +A  L  + + A 
Sbjct: 390 ALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAI 449

Query: 155 SRRATARKELGKLKESIEDSEFALRLEPQNQEI 187
           +     R  L  +   +   + AL     +  +
Sbjct: 450 ASNGGGRPALESIVAQLSRPDPALAALTNDHLV 482

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 78.6 bits (194), Expect = 4e-16
 Identities = 15/99 (15%), Positives = 31/99 (31%), Gaps = 1/99 (1%)

Query: 89  ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD 147
                    +  +  +    ++  L+P   VA A+       L   Q       +A  L 
Sbjct: 145 SHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 204

Query: 148 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186
            + + A +     ++ L  ++  +     A  L PQ   
Sbjct: 205 PQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVV 243

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 78.3 bits (193), Expect = 5e-16
 Identities = 14/99 (14%), Positives = 30/99 (30%), Gaps = 1/99 (1%)

Query: 89  ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD 147
                    +  +  +    ++  L+P   VA A+       L   Q       +A  L 
Sbjct: 77  SHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLT 136

Query: 148 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186
              + A +     ++ L  ++  +     A  L P+   
Sbjct: 137 PEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVV 175

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 77.5 bits (191), Expect = 8e-16
 Identities = 18/124 (14%), Positives = 35/124 (28%), Gaps = 3/124 (2%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
                   +  +  +    ++  L+P   VA A+       L   Q       +A  L  
Sbjct: 112 HDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTP 171

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASK 208
             + A +     ++ L  ++  +     A  L PQ                 E  Q+   
Sbjct: 172 EQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGG--KQALETVQRLLP 229

Query: 209 TLEK 212
            L +
Sbjct: 230 VLCQ 233

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 65.5 bits (160), Expect = 6e-12
 Identities = 19/120 (15%), Positives = 35/120 (29%), Gaps = 8/120 (6%)

Query: 99  KFKEAIDCY-----SRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIK 152
              EA+  +        + L+P   VA A+       L   Q       +A  L  + + 
Sbjct: 48  TAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVV 107

Query: 153 AYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEK 212
           A +     ++ L  ++  +     A  L P+                 E  Q     L +
Sbjct: 108 AIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGG--KQALETVQALLPVLCQ 165

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 48.2 bits (115), Expect = 3e-06
 Identities = 16/127 (12%), Positives = 30/127 (23%), Gaps = 3/127 (2%)

Query: 87  EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALN 145
             +       +     A +     + L     +  A R                    LN
Sbjct: 7   HHQWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLN 66

Query: 146 LDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQK 205
           L    + A +     ++ L  ++  +     A  L PQ                 E  Q+
Sbjct: 67  LTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGG--KQALETVQR 124

Query: 206 ASKTLEK 212
               L +
Sbjct: 125 LLPVLCQ 131

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 81.5 bits (202), Expect = 9e-18
 Identities = 18/125 (14%), Positives = 31/125 (24%), Gaps = 2/125 (1%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
            G    K+ +   AI  Y  ++    T    Y      +     F  A     + +    
Sbjct: 80  YGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT 139

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS-LYEKEVFQKAS 207
              K +     A     +  ++       L L+P         A   +          A 
Sbjct: 140 TDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAK 199

Query: 208 KTLEK 212
              EK
Sbjct: 200 PYYEK 204

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 81.2 bits (201), Expect = 1e-17
 Identities = 24/128 (18%), Positives = 50/128 (39%), Gaps = 6/128 (4%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDC---TEALN 145
             +  FK   + EAI+ +++  A    +   Y  RA+ Y +L ++  A+ D       +N
Sbjct: 9   YADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVN 68

Query: 146 LDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQK 205
                   +        + G+   +I+  + A+  +    ++  Q+      Y K  F  
Sbjct: 69  ATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSY--FYNKGNFPL 126

Query: 206 ASKTLEKY 213
           A + +EK 
Sbjct: 127 AIQYMEKQ 134

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 79.6 bits (197), Expect = 4e-17
 Identities = 17/127 (13%), Positives = 43/127 (33%), Gaps = 6/127 (4%)

Query: 90  LGNECFKQKKFKEAI---DCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALN 145
                ++  K+  A    + Y   +  +   +  +       +K  +   A      A++
Sbjct: 43  RAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVD 102

Query: 146 LDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQK 205
            D   +  Y +  +     G    +I+  E  +R    + ++  +L +    Y  + + K
Sbjct: 103 RDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQA--YYYNKEYVK 160

Query: 206 ASKTLEK 212
           A  +  K
Sbjct: 161 ADSSFVK 167

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 78.1 bits (193), Expect = 1e-16
 Identities = 21/135 (15%), Positives = 40/135 (29%), Gaps = 10/135 (7%)

Query: 88  KELGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTEALNL 146
            ++G+  + +  F  AI    + I  +      +     AY   + + +A+    + L L
Sbjct: 112 GQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL 171

Query: 147 DDRYIKAYSRRATARKELG---KLKESIEDSEFALRLEPQN-QEIKKQLAEV-----KSL 197
                  Y  RA A        K   +    E  + +      + K +L E         
Sbjct: 172 KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYY 231

Query: 198 YEKEVFQKASKTLEK 212
                  KA    + 
Sbjct: 232 TINRDKVKADAAWKN 246

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 75.4 bits (186), Expect = 1e-15
 Identities = 20/115 (17%), Positives = 40/115 (34%), Gaps = 12/115 (10%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR---RFQEAEDDCTEALN 145
           LG   +  K++ +A   + + + L P   + Y  RA A        +   A+    + + 
Sbjct: 148 LGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207

Query: 146 LD--------DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLA 192
           +         D  I+A    A          ++    +  L L+P N++    L 
Sbjct: 208 VCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLK 262

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 56.1 bits (136), Expect = 4e-09
 Identities = 16/100 (16%), Positives = 29/100 (29%), Gaps = 5/100 (5%)

Query: 116 TAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSE 175
                   A    K   + EA +   +           Y+RRA    EL K   + +D E
Sbjct: 2   NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIE 61

Query: 176 F---ALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEK 212
                +          +   ++  L +K     A +  + 
Sbjct: 62  TYFSKVNATKAKSADFEYYGKI--LMKKGQDSLAIQQYQA 99

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 51.1 bits (123), Expect = 1e-07
 Identities = 14/80 (17%), Positives = 19/80 (23%), Gaps = 9/80 (11%)

Query: 96  KQKKFKEAIDCYSRSIALSPT---------AVAYANRAMAYLKLRRFQEAEDDCTEALNL 146
              K   A   Y + I +              A    A  Y   R   +A+      L L
Sbjct: 191 PDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250

Query: 147 DDRYIKAYSRRATARKELGK 166
           D    KA        +    
Sbjct: 251 DPTNKKAIDGLKMKLEHHHH 270

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 81.6 bits (202), Expect = 1e-17
 Identities = 18/125 (14%), Positives = 42/125 (33%), Gaps = 1/125 (0%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           LG        +  A     R++ L P  A  +           R QEA D    AL+++ 
Sbjct: 178 LGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINP 237

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASK 208
            Y++     A +   + +   + +    A+ ++        + +   +    + F+    
Sbjct: 238 GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLN 297

Query: 209 TLEKY 213
            + + 
Sbjct: 298 VMNRP 302

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 79.6 bits (197), Expect = 7e-17
 Identities = 14/118 (11%), Positives = 42/118 (35%), Gaps = 1/118 (0%)

Query: 70  HISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYL 128
            + S  +  +   D  + +          +++E       ++ ++P  A  +A+  + Y 
Sbjct: 124 QLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYN 183

Query: 129 KLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186
               +  A  +   A+ L     + +++         + +E+++    AL + P    
Sbjct: 184 LSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVR 241

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 77.3 bits (191), Expect = 4e-16
 Identities = 17/128 (13%), Positives = 37/128 (28%), Gaps = 1/128 (0%)

Query: 89  ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD 147
           E G    K     EA   +      +P    A+ +  +   +  +   A      A  LD
Sbjct: 26  EEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 85

Query: 148 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKAS 207
            + I  ++  A +         ++      L  +PQ +++     +     +    Q   
Sbjct: 86  PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSED 145

Query: 208 KTLEKYGK 215
                  +
Sbjct: 146 FFFAAPNE 153

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 70.0 bits (172), Expect = 1e-13
 Identities = 20/133 (15%), Positives = 38/133 (28%), Gaps = 18/133 (13%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           LG    + +K   AI   + +  L P     +A  A+++        A       L    
Sbjct: 61  LGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 120

Query: 149 RYIKAYSRRATAR---------------KELGKLKESIEDSEFALRLEPQNQEIKKQLAE 193
           +Y +  S    A                    + +E       AL + P + ++   L  
Sbjct: 121 QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGV 180

Query: 194 VKSLYEKEVFQKA 206
           +        +  A
Sbjct: 181 L--YNLSNNYDSA 191

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 18/115 (15%), Positives = 31/115 (26%), Gaps = 3/115 (2%)

Query: 99  KFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRR 157
              +    Y                  ++ LKL    EA               +A+   
Sbjct: 2   HMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSL 61

Query: 158 ATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEK 212
              + E  K   +I     A  L+P++  +   LA   S   +     A  +L  
Sbjct: 62  GLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAV--SHTNEHNANAALASLRA 114

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 80.8 bits (200), Expect = 3e-17
 Identities = 22/123 (17%), Positives = 42/123 (34%), Gaps = 10/123 (8%)

Query: 89  ELGNECFKQKKFKEAIDCYSRSIALSPT----------AVAYANRAMAYLKLRRFQEAED 138
           E+G   F+  ++K A   +  ++                    N      KL+++ EA D
Sbjct: 198 EVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD 257

Query: 139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLY 198
              +AL L  +    YS        +G  + +++    AL L   +      L     +Y
Sbjct: 258 YHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMY 317

Query: 199 EKE 201
             +
Sbjct: 318 IGD 320

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 75.8 bits (187), Expect = 2e-15
 Identities = 14/110 (12%), Positives = 31/110 (28%), Gaps = 1/110 (0%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
            G+    + +  +A+  Y  +  L     +      + Y      + AE   ++AL++  
Sbjct: 131 YGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAP 190

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLY 198
                         + G+ K + +    AL                  L 
Sbjct: 191 EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLN 240

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 75.0 bits (185), Expect = 2e-15
 Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 1/87 (1%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           LG+ C K KK+ EA+D + +++ L P  A  Y+     +  +  F+ A D    AL L  
Sbjct: 242 LGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR 301

Query: 149 RYIKAYSRRATARKELGKLKESIEDSE 175
               + +      +      E+   ++
Sbjct: 302 DDTFSVTMLGHCIEMYIGDSEAYIGAD 328

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 70.4 bits (173), Expect = 9e-14
 Identities = 16/118 (13%), Positives = 34/118 (28%), Gaps = 3/118 (2%)

Query: 96  KQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAY 154
              K + A    S++  L  T   A+     ++       +A      A  L        
Sbjct: 103 VGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPM 162

Query: 155 SRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEK 212
                        K +      AL + P++  +  ++  V   ++   ++ A K    
Sbjct: 163 LYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVV--AFQNGEWKTAEKWFLD 218

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 54.2 bits (131), Expect = 2e-08
 Identities = 14/92 (15%), Positives = 24/92 (26%), Gaps = 6/92 (6%)

Query: 93  ECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIK 152
               +    E++D       L        + A  +     F+      +  +  D  +  
Sbjct: 4   NKPSETVIPESVD------GLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHAS 57

Query: 153 AYSRRATARKELGKLKESIEDSEFALRLEPQN 184
                     EL K  E    S   + L P N
Sbjct: 58  CLPVHIGTLVELNKANELFYLSHKLVDLYPSN 89

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 53.8 bits (130), Expect = 3e-08
 Identities = 17/118 (14%), Positives = 30/118 (25%), Gaps = 4/118 (3%)

Query: 71  ISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLK 129
           I  S+   +   D      L    +    FK      S  +   P  A          ++
Sbjct: 11  IPESVDGLQENLDVVVS--LAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVE 68

Query: 130 LRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKES-IEDSEFALRLEPQNQE 186
           L +  E      + ++L      ++         +G   E        A  LE     
Sbjct: 69  LNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGP 126

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 78.2 bits (193), Expect = 4e-17
 Identities = 35/137 (25%), Positives = 52/137 (37%), Gaps = 16/137 (11%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR 149
            G     +K +K A+D +S      P +    N    Y  L+   EAE   T ++N D  
Sbjct: 12  EGVLAADKKDWKGALDAFSA--VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH 69

Query: 150 YIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI---------KKQLAEVK----- 195
              AY +R     +  K   +I+D + AL     NQ I         K    EV      
Sbjct: 70  LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAF 129

Query: 196 SLYEKEVFQKASKTLEK 212
              +KE ++KA + L  
Sbjct: 130 MYAKKEEWKKAEEQLAL 146

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 49.3 bits (118), Expect = 4e-07
 Identities = 15/97 (15%), Positives = 29/97 (29%), Gaps = 17/97 (17%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-----------------AVAYANRAMAYLKLRR 132
            G   ++ +K+  AI     ++                           N A  Y K   
Sbjct: 77  RGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE 136

Query: 133 FQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKE 169
           +++AE+    A ++      +   +A       KL E
Sbjct: 137 WKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLYE 173

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 13/96 (13%), Positives = 34/96 (35%), Gaps = 5/96 (5%)

Query: 117 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEF 176
           A++  N  +     + ++ A D  +    + D + +           L  + E+ +    
Sbjct: 6   AISLWNEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTR 62

Query: 177 ALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEK 212
           ++  +        Q   +   Y+ E +  A K L++
Sbjct: 63  SINRDKHLAVAYFQRGML--YYQTEKYDLAIKDLKE 96

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 81.4 bits (200), Expect = 5e-17
 Identities = 26/124 (20%), Positives = 54/124 (43%), Gaps = 3/124 (2%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           L N   +Q   +EA+  Y +++ + P  A A++N A    +  + QEA     EA+ +  
Sbjct: 15  LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 74

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASK 208
            +  AYS      KE+  ++ +++    A+++ P   +    LA +    +     +A  
Sbjct: 75  TFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASI--HKDSGNIPEAIA 132

Query: 209 TLEK 212
           +   
Sbjct: 133 SYRT 136

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 80.6 bits (198), Expect = 1e-16
 Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 1/107 (0%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           L +   +Q K +EA+  Y  +I +SPT A AY+N      +++  Q A    T A+ ++ 
Sbjct: 49  LASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINP 108

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVK 195
            +  A+S  A+  K+ G + E+I     AL+L+P   +    LA   
Sbjct: 109 AFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCL 155

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 71.0 bits (173), Expect = 1e-13
 Identities = 23/106 (21%), Positives = 43/106 (40%), Gaps = 1/106 (0%)

Query: 83  DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCT 141
            A +   +GN   + +  + A+ CY+R+I ++P  A A++N A  +       EA     
Sbjct: 76  FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYR 135

Query: 142 EALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI 187
            AL L   +  AY   A   + +    +  E  +  + +     E 
Sbjct: 136 TALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEK 181

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 57.1 bits (137), Expect = 4e-09
 Identities = 23/102 (22%), Positives = 44/102 (43%), Gaps = 3/102 (2%)

Query: 112 ALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKES 170
              PT A +  N A    +    +EA     +AL +   +  A+S  A+  ++ GKL+E+
Sbjct: 3   GSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEA 62

Query: 171 IEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEK 212
           +   + A+R+ P   +    +     L E +  Q A +   +
Sbjct: 63  LMHYKEAIRISPTFADAYSNMGNT--LKEMQDVQGALQCYTR 102

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 80.7 bits (199), Expect = 1e-16
 Identities = 19/129 (14%), Positives = 44/129 (34%), Gaps = 6/129 (4%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
             +    + +  +AI  Y+ +  L   T + Y    M +++L     A +    +  L  
Sbjct: 413 FAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ 472

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV-----KSLYEKEVF 203
                 +           ++ +I   + AL L  + Q  +K  A        +  + +++
Sbjct: 473 YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMY 532

Query: 204 QKASKTLEK 212
             A   L +
Sbjct: 533 DAAIDALNQ 541

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 79.5 bits (196), Expect = 2e-16
 Identities = 23/114 (20%), Positives = 38/114 (33%), Gaps = 8/114 (7%)

Query: 89  ELGNECFKQKKFKEAIDCYSRSIALSPT--------AVAYANRAMAYLKLRRFQEAEDDC 140
           ELG   F +   + AI+ +  ++ L           A  +AN   AY KL+ +  A D  
Sbjct: 480 ELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDAL 539

Query: 141 TEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV 194
            + L L       ++  A           +I     +L + P        L   
Sbjct: 540 NQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRA 593

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 76.4 bits (188), Expect = 2e-15
 Identities = 23/124 (18%), Positives = 41/124 (33%), Gaps = 3/124 (2%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           +G       K  EA   +S+S  + P    A+   A ++       +A    T A  L  
Sbjct: 379 VGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ 438

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASK 208
                Y        +LG +  + E  + +  L   +  +  +L  V   + K   Q A  
Sbjct: 439 GTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVV--AFNKSDMQTAIN 496

Query: 209 TLEK 212
             + 
Sbjct: 497 HFQN 500

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 65.6 bits (160), Expect = 7e-12
 Identities = 15/96 (15%), Positives = 35/96 (36%), Gaps = 1/96 (1%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
                 +  +  +     +  +   P  AV +    + YL + +  EA    +++  +D 
Sbjct: 345 HLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDP 404

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN 184
           ++  A+   A +    G+  ++I     A RL    
Sbjct: 405 QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGT 440

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 64.5 bits (157), Expect = 2e-11
 Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 1/75 (1%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           LG+   K K +  AID  ++ + LS   A  +   A+ YL  +    A     E+L +  
Sbjct: 522 LGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581

Query: 149 RYIKAYSRRATARKE 163
             I A      A +E
Sbjct: 582 NEIMASDLLKRALEE 596

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 63.3 bits (154), Expect = 4e-11
 Identities = 20/121 (16%), Positives = 39/121 (32%), Gaps = 1/121 (0%)

Query: 65  YDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANR 123
           +D V  ++ S  ++E      S   L       +      + Y  SI     ++     +
Sbjct: 252 WDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCK 311

Query: 124 AMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQ 183
           A       RF +     T+ L +D   +  Y     +  E G+  +    S   +   P+
Sbjct: 312 ADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPE 371

Query: 184 N 184
            
Sbjct: 372 K 372

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 62.5 bits (152), Expect = 7e-11
 Identities = 8/98 (8%), Positives = 30/98 (30%), Gaps = 1/98 (1%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
             +  F + +F + +   ++ + + P     Y     +  +     +      + ++   
Sbjct: 311 KADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHP 370

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186
                +         + K+ E+      +  ++PQ   
Sbjct: 371 EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGP 408

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 52.1 bits (125), Expect = 1e-07
 Identities = 20/194 (10%), Positives = 46/194 (23%), Gaps = 42/194 (21%)

Query: 58  GNSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT- 116
           G +     D  +     + +     +A+     G        F  A +CY  ++ +    
Sbjct: 174 GETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKC 233

Query: 117 --------------------------------------AVAYANRAMAYLKLRRFQEAED 138
                                                    Y  +          + AED
Sbjct: 234 YEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAED 293

Query: 139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLY 198
               ++N  ++       +A       +  + +  +   L ++P N ++         L+
Sbjct: 294 -YLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLAS--LH 350

Query: 199 EKEVFQKASKTLEK 212
           E     K       
Sbjct: 351 ESGEKNKLYLISND 364

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 49.8 bits (119), Expect = 8e-07
 Identities = 19/173 (10%), Positives = 49/173 (28%), Gaps = 7/173 (4%)

Query: 31  KKMKHKASSKDNLVSSSLKSAKKPSPSGNSYSRNYDPVSHISSSLMNEESTPDATSE--- 87
                  +       ++  S  + S    S        +    S + E +  +  S    
Sbjct: 25  HANAAYMTPPSMGALNANNSNSQLSTLTISPMTYLANNTSTDGSFLKERNAQNTDSLSRE 84

Query: 88  ---KELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEAL 144
              +   ++   Q+++K A     + + ++         A  Y     +  A+   T+  
Sbjct: 85  DYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKE- 143

Query: 145 NLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSL 197
           +L +R        A    +L   + ++             +   K L +   +
Sbjct: 144 DLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGI 196

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 49.8 bits (119), Expect = 9e-07
 Identities = 28/130 (21%), Positives = 48/130 (36%), Gaps = 10/130 (7%)

Query: 91  GNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY 150
           G     +K  K A     +   +   A     R   Y  L  F  A++   EAL +D + 
Sbjct: 174 GETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKC 233

Query: 151 IKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYE----KEVFQKA 206
            +A+ +  +       L  + E+ +  L+L       K+  A ++SLY     K   +  
Sbjct: 234 YEAFDQLVS-----NHLLTADEEWDLVLKLNYSTY-SKEDAAFLRSLYMLKLNKTSHEDE 287

Query: 207 SKTLEKYGKS 216
            +  E Y  S
Sbjct: 288 LRRAEDYLSS 297

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 78.2 bits (193), Expect = 3e-16
 Identities = 22/125 (17%), Positives = 50/125 (40%), Gaps = 1/125 (0%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           LG       +F  AID ++ ++ + P     +           R +EA +  T AL +  
Sbjct: 219 LGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP 278

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASK 208
            +I++      +   LG  +E++ +   AL L+ +++  ++      S       + A  
Sbjct: 279 GFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALS 338

Query: 209 TLEKY 213
            +++ 
Sbjct: 339 LMDQP 343

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 73.6 bits (181), Expect = 1e-14
 Identities = 19/126 (15%), Positives = 37/126 (29%), Gaps = 3/126 (2%)

Query: 89  ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD 147
           E G +  K+      I     +I   P  A A+    +   +    Q A       L L 
Sbjct: 70  EEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ 129

Query: 148 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKAS 207
              +KA    A +       +++ E  +  ++  P+ + + K               K+ 
Sbjct: 130 PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGS--PGLTRRMSKSP 187

Query: 208 KTLEKY 213
                 
Sbjct: 188 VDSSVL 193

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 71.2 bits (175), Expect = 6e-14
 Identities = 16/94 (17%), Positives = 34/94 (36%), Gaps = 1/94 (1%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           LG    + +  + AI    R + L P    A    A++Y      Q+A +     +  + 
Sbjct: 105 LGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNP 164

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEP 182
           +Y      +  +     ++ +S  DS     ++ 
Sbjct: 165 KYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKE 198

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 67.4 bits (165), Expect = 1e-12
 Identities = 12/102 (11%), Positives = 29/102 (28%), Gaps = 3/102 (2%)

Query: 88  KELGNECFKQKKFKEAIDCYSRSIALSPT---AVAYANRAMAYLKLRRFQEAEDDCTEAL 144
           + +          +   + Y  +   +             + +     F  A D    AL
Sbjct: 181 RRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAAL 240

Query: 145 NLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186
            +       ++R         + +E++E    AL ++P    
Sbjct: 241 TVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIR 282

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 62.4 bits (152), Expect = 5e-11
 Identities = 21/150 (14%), Positives = 38/150 (25%), Gaps = 3/150 (2%)

Query: 64  NYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYAN 122
             +  +     +  E       +      E   Q     +   Y                
Sbjct: 11  AVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFE 70

Query: 123 RAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEP 182
             +  LK             A+  D    +A+      + E    + +I   +  L L+P
Sbjct: 71  EGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQP 130

Query: 183 QNQEIKKQLAEVKSLYEKEVFQKASKTLEK 212
            N +    LA   S       Q A + L+ 
Sbjct: 131 NNLKALMALAV--SYTNTSHQQDACEALKN 158

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 58.9 bits (143), Expect = 7e-10
 Identities = 15/110 (13%), Positives = 35/110 (31%), Gaps = 13/110 (11%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           L          ++A +     I  +P       N+  +    RR  ++  D +    + +
Sbjct: 139 LAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKE 198

Query: 149 RYIKA------------YSRRATARKELGKLKESIEDSEFALRLEPQNQE 186
            Y++A             +         G+   +I+    AL + P++  
Sbjct: 199 LYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYS 248

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 50.1 bits (120), Expect = 5e-07
 Identities = 17/125 (13%), Positives = 31/125 (24%), Gaps = 11/125 (8%)

Query: 97  QKKFKEAIDCYSRSIALSP---------TAVAYANRAMAYLKLRRFQEAEDDCTEALNLD 147
             +F+ A                         + +             +E          
Sbjct: 2   AMEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENP 61

Query: 148 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKAS 207
            +           R + G L  +I   E A+  +P + E  + L       E E  Q A 
Sbjct: 62  FKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGIT--QAENENEQAAI 119

Query: 208 KTLEK 212
             L++
Sbjct: 120 VALQR 124

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 78.2 bits (193), Expect = 3e-16
 Identities = 19/108 (17%), Positives = 47/108 (43%), Gaps = 1/108 (0%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           LG       ++ +A+DC++ ++++ P   + +           + +EA      AL L  
Sbjct: 223 LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP 282

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS 196
            YI++      +   LG  +E++E    AL ++ +++  + +   +  
Sbjct: 283 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSE 330

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 76.2 bits (188), Expect = 2e-15
 Identities = 16/128 (12%), Positives = 33/128 (25%), Gaps = 1/128 (0%)

Query: 89  ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD 147
           E G    ++     A+  +  ++   P    A+        +  +   A       L L 
Sbjct: 69  EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK 128

Query: 148 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKAS 207
                A    A +       +++ E     LR  P    +     E          ++  
Sbjct: 129 PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRIL 188

Query: 208 KTLEKYGK 215
            +L     
Sbjct: 189 GSLLSDSL 196

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 74.3 bits (183), Expect = 6e-15
 Identities = 17/120 (14%), Positives = 38/120 (31%), Gaps = 3/120 (2%)

Query: 70  HISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT---AVAYANRAMA 126
           H+ +              K +         F E  + +  ++ L PT           + 
Sbjct: 167 HLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVL 226

Query: 127 YLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186
           +     + +A D  T AL++       +++         + +E++     AL L+P    
Sbjct: 227 FNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR 286

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 62.4 bits (152), Expect = 5e-11
 Identities = 19/123 (15%), Positives = 38/123 (30%), Gaps = 7/123 (5%)

Query: 95  FKQKKFKEAIDCYSRSIALSPT-----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR 149
           +           Y +                    +  L+      A      A+  D +
Sbjct: 37  WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK 96

Query: 150 YIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKT 209
           +++A+    T + E  +   +I      L L+P NQ     LA   S   + + ++A + 
Sbjct: 97  HMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAV--SFTNESLQRQACEI 154

Query: 210 LEK 212
           L  
Sbjct: 155 LRD 157

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 62.0 bits (151), Expect = 7e-11
 Identities = 20/101 (19%), Positives = 34/101 (33%), Gaps = 12/101 (11%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           LG       + +EA+  Y R++ L P    +  N  ++ + L   +EA +   EALN+  
Sbjct: 257 LGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR 316

Query: 149 RYIKAYSRRA-----------TARKELGKLKESIEDSEFAL 178
           +                     A   LG+           L
Sbjct: 317 KSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 8/69 (11%), Positives = 21/69 (30%), Gaps = 12/69 (17%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSP------------TAVAYANRAMAYLKLRRFQEAE 137
           LG  C      +EA++ +  ++ +              +   ++   +A   L +     
Sbjct: 291 LGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350

Query: 138 DDCTEALNL 146
                 L+ 
Sbjct: 351 AADARDLST 359

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 78.0 bits (192), Expect = 6e-16
 Identities = 19/107 (17%), Positives = 33/107 (30%), Gaps = 1/107 (0%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           L +                R +AL P    A A         +R  EA     +A +   
Sbjct: 29  LADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAP 88

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVK 195
            +         A ++ G+ + +      A +L P+   I  QL   +
Sbjct: 89  EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWR 135

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 74.5 bits (183), Expect = 8e-15
 Identities = 19/114 (16%), Positives = 36/114 (31%), Gaps = 3/114 (2%)

Query: 100 FKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRA 158
               +     ++   P   VA+   A A L +      E      L L   + +A +R  
Sbjct: 5   GPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLG 64

Query: 159 TARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEK 212
             R    +  E+    + A    P++  I   L     L +    + A+    +
Sbjct: 65  RVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHA--LEDAGQAEAAAAAYTR 116

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 58.3 bits (141), Expect = 2e-09
 Identities = 14/98 (14%), Positives = 29/98 (29%), Gaps = 2/98 (2%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           LG   + Q++  EA     ++   +P           A     + + A    T A  L  
Sbjct: 63  LGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP 122

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186
                 ++    R+ L     +++     +R       
Sbjct: 123 EEPYITAQLLNWRRRLCD-WRALDVLSAQVRAAVAQGV 159

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 11/63 (17%), Positives = 18/63 (28%)

Query: 132 RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQL 191
                      A+    +   A+   A A   +G         +  L L P + E   +L
Sbjct: 4   DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL 63

Query: 192 AEV 194
             V
Sbjct: 64  GRV 66

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 77.0 bits (189), Expect = 2e-15
 Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 5/136 (3%)

Query: 79  ESTPD-ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEA 136
             TPD   +    G      +  +  +    ++  L+P   VA A+       L   Q  
Sbjct: 288 GLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRL 347

Query: 137 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS 196
                +A  L    + A +     ++ L  ++  +     A  L P            ++
Sbjct: 348 LPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQA 407

Query: 197 LYEKEVFQKASKTLEK 212
           L   E  Q+    L +
Sbjct: 408 L---ETVQRLLPVLCQ 420

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 76.6 bits (188), Expect = 2e-15
 Identities = 17/131 (12%), Positives = 34/131 (25%), Gaps = 3/131 (2%)

Query: 83  DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCT 141
              +           +  +  +    ++  L P   VA A+       L   Q       
Sbjct: 225 QVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLC 284

Query: 142 EALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKE 201
           +A  L    + A +     ++ L  ++  +     A  L P                  E
Sbjct: 285 QAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGG--KQALE 342

Query: 202 VFQKASKTLEK 212
             Q+    L +
Sbjct: 343 TVQRLLPVLCQ 353

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 75.1 bits (184), Expect = 9e-15
 Identities = 14/110 (12%), Positives = 31/110 (28%), Gaps = 1/110 (0%)

Query: 78  EESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEA 136
             +     +           +  +  +    ++  L+P   VA A+       L   Q  
Sbjct: 627 GLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRL 686

Query: 137 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186
                +A  L    + A +     ++ L  ++  +     A  L P    
Sbjct: 687 LPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVV 736

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 73.5 bits (180), Expect = 3e-14
 Identities = 17/124 (13%), Positives = 34/124 (27%), Gaps = 3/124 (2%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
                   +  +  +    ++  L+P   VA A+       L   Q       +A  L  
Sbjct: 198 NNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPP 257

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASK 208
             + A +     ++ L  ++  +     A  L P                  E  Q+   
Sbjct: 258 DQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGG--KQALETVQRLLP 315

Query: 209 TLEK 212
            L +
Sbjct: 316 VLCQ 319

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 69.3 bits (169), Expect = 6e-13
 Identities = 14/98 (14%), Positives = 29/98 (29%), Gaps = 1/98 (1%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
            G      +  +  +    ++  L+    VA A+       L   Q       +A  L  
Sbjct: 673 NGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTP 732

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186
             + A +     ++ L  ++  +     A  L P    
Sbjct: 733 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVV 770

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 68.5 bits (167), Expect = 1e-12
 Identities = 17/124 (13%), Positives = 35/124 (28%), Gaps = 3/124 (2%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
                   +  +  +    ++  L+P   VA A+       L   Q+      +A  L  
Sbjct: 435 HDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTP 494

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASK 208
             + A +     ++ L  ++  +     A  L P                  E  Q+   
Sbjct: 495 DQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGG--KQALETVQRLLP 552

Query: 209 TLEK 212
            L +
Sbjct: 553 VLCQ 556

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 68.1 bits (166), Expect = 1e-12
 Identities = 14/99 (14%), Positives = 29/99 (29%), Gaps = 1/99 (1%)

Query: 89  ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD 147
             G      +  +  +    ++  L+    VA A+       L   Q       +A  L 
Sbjct: 570 SNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLT 629

Query: 148 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186
              + A +     ++ L  ++  +     A  L P    
Sbjct: 630 PAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVV 668

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 67.4 bits (164), Expect = 3e-12
 Identities = 13/108 (12%), Positives = 29/108 (26%), Gaps = 1/108 (0%)

Query: 80  STPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED 138
           +     +              +  +    ++  L+P   VA A+       L   Q    
Sbjct: 493 TPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLP 552

Query: 139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186
              +A  L    + A +     ++ L  ++  +     A  L      
Sbjct: 553 VLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVV 600

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 66.6 bits (162), Expect = 4e-12
 Identities = 15/103 (14%), Positives = 31/103 (30%), Gaps = 1/103 (0%)

Query: 83  DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCT 141
              +    G      +  +  +    ++  L+P   VA A+       L   Q       
Sbjct: 530 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLC 589

Query: 142 EALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN 184
           +A  L    + A +     ++ L  ++  +     A  L P  
Sbjct: 590 QAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQ 632

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 63.1 bits (153), Expect = 6e-11
 Identities = 15/117 (12%), Positives = 33/117 (28%), Gaps = 3/117 (2%)

Query: 97  QKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYS 155
            +  +  +    ++  L+P   VA A+       L   Q       +   L    + A +
Sbjct: 408 LETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIA 467

Query: 156 RRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEK 212
                ++ L  +++ +     A  L P                     Q+    L +
Sbjct: 468 SHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGG--KQALATVQRLLPVLCQ 522

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 61.2 bits (148), Expect = 2e-10
 Identities = 14/99 (14%), Positives = 29/99 (29%), Gaps = 2/99 (2%)

Query: 89  ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD 147
             G      +  +  +    ++  L+P   VA A+       L   Q       +A  L 
Sbjct: 367 SNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQ-ALETVQRLLPVLCQAHGLT 425

Query: 148 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186
              + A +     ++ L  ++  +        L P    
Sbjct: 426 PDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVV 464

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 59.3 bits (143), Expect = 1e-09
 Identities = 17/125 (13%), Positives = 37/125 (29%), Gaps = 5/125 (4%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
                   +  +  +    ++  L+P   VA A+       L   Q       +A  L  
Sbjct: 707 NNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 766

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE-IKKQLAEVKSLYEKEVFQKAS 207
             + A +     ++ L  ++  +        L       I   +   ++L   E  Q+  
Sbjct: 767 AQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQAL---ETVQRLL 823

Query: 208 KTLEK 212
             L +
Sbjct: 824 PVLCQ 828

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 57.3 bits (138), Expect = 4e-09
 Identities = 16/108 (14%), Positives = 29/108 (26%), Gaps = 1/108 (0%)

Query: 80  STPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED 138
            T       + G     +             + L+P   VA A+       L   Q    
Sbjct: 154 DTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLP 213

Query: 139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186
              +A  L    + A +     ++ L  ++  +     A  L P    
Sbjct: 214 VLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVV 261

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 46.9 bits (111), Expect = 8e-06
 Identities = 12/91 (13%), Positives = 27/91 (29%), Gaps = 1/91 (1%)

Query: 97  QKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYS 155
            +  +  +    ++  L+P   VA A+       L   Q       +   L    + A +
Sbjct: 748 LETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIA 807

Query: 156 RRATARKELGKLKESIEDSEFALRLEPQNQE 186
                ++ L  ++  +     A  L      
Sbjct: 808 SNIGGKQALETVQRLLPVLCQAHGLTQDQVV 838

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 46.9 bits (111), Expect = 8e-06
 Identities = 14/117 (11%), Positives = 33/117 (28%), Gaps = 4/117 (3%)

Query: 97  QKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYS 155
            +  +  +    ++  L+    VA A+       L   Q       +   L    + A +
Sbjct: 816 LETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQVVAIA 875

Query: 156 RRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEK 212
                ++ L  ++  +        L              ++L   E  Q+    L +
Sbjct: 876 SNIGGKQALETVQRLLPVLCQDHGLTLDQVVAIASNGGKQAL---ETVQRLLPVLCQ 929

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 44.6 bits (105), Expect = 4e-05
 Identities = 11/108 (10%), Positives = 28/108 (25%), Gaps = 2/108 (1%)

Query: 80  STPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED 138
           +     +           +  +  +    +   L+    VA A+       L   Q    
Sbjct: 867 TPDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLDQVVAIASNGG-KQALETVQRLLP 925

Query: 139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186
              +   L    + A +  +  ++ L  ++  +        L P    
Sbjct: 926 VLCQDHGLTPDQVVAIASNSGGKQALETVQRLLPVLCQDHGLTPNQVV 973

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 41.6 bits (97), Expect = 3e-04
 Identities = 16/112 (14%), Positives = 28/112 (25%), Gaps = 3/112 (2%)

Query: 102 EAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATA 160
           +A +     + L     V  A R                    LNL    + A +     
Sbjct: 142 DAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGG 201

Query: 161 RKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEK 212
           ++ L  ++  +     A  L P                  E  Q+    L +
Sbjct: 202 KQALETVQRLLPVLCQAHGLTPAQVVAIASHDGG--KQALETMQRLLPVLCQ 251

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 70.4 bits (173), Expect = 2e-15
 Identities = 15/104 (14%), Positives = 29/104 (27%), Gaps = 3/104 (2%)

Query: 101 KEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRAT 159
           +   +     +A      +        Y +  +F  A      AL+ D  Y  A+     
Sbjct: 2   QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGK 61

Query: 160 ARKELGKLKESIEDSEFALRLEPQNQEI--KKQLAEVKSLYEKE 201
             +  G    + +  E  L       +    K+L        +E
Sbjct: 62  TLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLARE 105

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 52.0 bits (125), Expect = 1e-08
 Identities = 11/80 (13%), Positives = 22/80 (27%), Gaps = 3/80 (3%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           LG    + ++F  A+     ++   PT +VA+               A       L    
Sbjct: 25  LGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQ 84

Query: 149 RY--IKAYSRRATARKELGK 166
                +         + L +
Sbjct: 85  SRGDQQVVKELQVFLRRLAR 104

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 71.3 bits (175), Expect = 3e-15
 Identities = 18/118 (15%), Positives = 36/118 (30%), Gaps = 1/118 (0%)

Query: 89  ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD 147
            LG   ++  K+ +A   +     L    A  +         L  +++A    +    +D
Sbjct: 23  ALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD 82

Query: 148 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQK 205
               +     A    +LG L  +      A  L       +   A   ++ E    +K
Sbjct: 83  INEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAVTARK 140

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 60.9 bits (148), Expect = 1e-11
 Identities = 14/84 (16%), Positives = 27/84 (32%), Gaps = 4/84 (4%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNL-- 146
           LG        +++A+  YS    +         + A  +L+L     AE     A  L  
Sbjct: 58  LGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAA 117

Query: 147 -DDRYIKAYSRRATARKELGKLKE 169
               +    +R     + +   K+
Sbjct: 118 AQPAHEALAARAGAMLEAVTARKD 141

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 51.3 bits (123), Expect = 3e-08
 Identities = 12/107 (11%), Positives = 30/107 (28%), Gaps = 3/107 (2%)

Query: 107 YSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG 165
            +    LS  T            +  ++ +A+        LD    + +      R+ LG
Sbjct: 7   LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66

Query: 166 KLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEK 212
             +++++   +   ++          AE     +      A      
Sbjct: 67  LYEQALQSYSYGALMDINEPRFPFHAAE--CHLQLGDLDGAESGFYS 111

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 71.7 bits (176), Expect = 8e-15
 Identities = 14/113 (12%), Positives = 42/113 (37%), Gaps = 3/113 (2%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAY-LKLRRFQEAEDDCTEALNLD 147
                  + + K+A+  Y + + L      A       Y L   + ++  +   + L+  
Sbjct: 94  CAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSP 153

Query: 148 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEK 200
            +   A  R   ++    + +++    +  +   P + E +K L ++  + ++
Sbjct: 154 TKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFP-STEAQKTLDKILRIEKE 205

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 71.7 bits (176), Expect = 8e-15
 Identities = 21/139 (15%), Positives = 47/139 (33%), Gaps = 4/139 (2%)

Query: 76  MNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQ 134
           +++ S   +    EL     K + + +A   Y   +  +P         A   +   + +
Sbjct: 46  VDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEK 105

Query: 135 EAEDDCTEALNLDDRYIKAYSRRATARKELGKL-KESIEDSEFALRLEPQNQEIKKQLAE 193
           +A     + L L+   + A            +  K+ +E     L    + Q  + +   
Sbjct: 106 DALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDG- 164

Query: 194 VKSLYEKEVFQKASKTLEK 212
             S      ++KA  +L+K
Sbjct: 165 -LSKLFTTRYEKARNSLQK 182

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 68.2 bits (167), Expect = 1e-13
 Identities = 26/142 (18%), Positives = 50/142 (35%), Gaps = 20/142 (14%)

Query: 89  ELGNECFKQKKFKEAIDCYSRSIALSP-----------------TAVAYANRAMAYLKLR 131
           +  +   +  +  +A+  + ++IAL+                  ++      A+AY K R
Sbjct: 9   QKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNR 68

Query: 132 RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQL 191
            + +A     E L      +      A  +   G+ K+++   E  L+LE  N      L
Sbjct: 69  NYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFL 128

Query: 192 AEVKSLYEK-EVFQKASKTLEK 212
                 Y   E  +K  +T  K
Sbjct: 129 GNY--YYLTAEQEKKKLETDYK 148

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 46.3 bits (110), Expect = 4e-06
 Identities = 15/113 (13%), Positives = 37/113 (32%), Gaps = 18/113 (15%)

Query: 116 TAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAY----------------SRRAT 159
           +      +  A ++  +  +A     + + L+    + Y                +  A 
Sbjct: 3   SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELAL 62

Query: 160 ARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEK 212
           A K+     ++    +  L+  P N +  +  AE+     +   + A +  EK
Sbjct: 63  AYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEM--QVCRGQEKDALRMYEK 113

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 72.3 bits (178), Expect = 9e-15
 Identities = 23/127 (18%), Positives = 51/127 (40%), Gaps = 5/127 (3%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALN--L 146
           L      + + K A + Y +++A     A    N      + +R++EA     EA    L
Sbjct: 77  LAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTL 136

Query: 147 DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKA 206
                + +        ++ K  ++ E  E +LRL      +  ++A++  LY++  +  A
Sbjct: 137 YPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADL--LYKEREYVPA 194

Query: 207 SKTLEKY 213
            +  + +
Sbjct: 195 RQYYDLF 201

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 71.1 bits (175), Expect = 2e-14
 Identities = 14/100 (14%), Positives = 40/100 (40%), Gaps = 3/100 (3%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALS--PT-AVAYANRAMAYLKLRRFQEAEDDCTEALNL 146
            G   ++QK+++EA      +   +  P  +  + N  +  L++++  +A++   ++L L
Sbjct: 111 YGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL 170

Query: 147 DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186
           +          A    +  +   + +  +   +   QN  
Sbjct: 171 NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNAR 210

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 66.9 bits (164), Expect = 6e-13
 Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 1/105 (0%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           LG    + KK  +A + + +S+ L+          A    K R +  A            
Sbjct: 147 LGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGG 206

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAE 193
           +  ++        K       +        RL P + E ++  AE
Sbjct: 207 QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQAE 251

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 65.8 bits (161), Expect = 2e-12
 Identities = 16/92 (17%), Positives = 41/92 (44%), Gaps = 1/92 (1%)

Query: 89  ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD 147
           +LG    ++   ++A     +++ + P+ A A+A  A+ +      + A+++  +AL  D
Sbjct: 42  QLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD 101

Query: 148 DRYIKAYSRRATARKELGKLKESIEDSEFALR 179
            R  +  +       E  + +E+ +    A +
Sbjct: 102 SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ 133

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 61.5 bits (150), Expect = 4e-11
 Identities = 21/124 (16%), Positives = 48/124 (38%), Gaps = 4/124 (3%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPTAV-AYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
             +    +           ++      A  AY    + YL+    ++A+    +AL +D 
Sbjct: 10  HSSGLVPRGSHMGD-QNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP 68

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASK 208
               A++  A   +   + K + E+   AL  + +N  +         LYE++ +++A +
Sbjct: 69  SSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGF--LYEQKRYEEAYQ 126

Query: 209 TLEK 212
            L +
Sbjct: 127 RLLE 130

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 39.9 bits (94), Expect = 7e-04
 Identities = 7/60 (11%), Positives = 16/60 (26%), Gaps = 1/60 (1%)

Query: 89  ELGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTEALNLD 147
           E+ +  +K++++  A   Y          A +                A     +   L 
Sbjct: 180 EMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 64.3 bits (158), Expect = 2e-13
 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 1/77 (1%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           LGN  +KQ  + EAI+ Y +++ L P  A A+ N   AY K   + EA +   +AL LD 
Sbjct: 15  LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74

Query: 149 RYIKAYSRRATARKELG 165
              +A      A+++ G
Sbjct: 75  NNAEAKQNLGNAKQKQG 91

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 57.8 bits (141), Expect = 5e-11
 Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 2/77 (2%)

Query: 112 ALSPT--AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKE 169
           A+ P   A A+ N   AY K   + EA +   +AL LD    +A+     A  + G   E
Sbjct: 2   AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 61

Query: 170 SIEDSEFALRLEPQNQE 186
           +IE  + AL L+P N E
Sbjct: 62  AIEYYQKALELDPNNAE 78

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 64.9 bits (158), Expect = 6e-13
 Identities = 15/113 (13%), Positives = 34/113 (30%), Gaps = 1/113 (0%)

Query: 89  ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD 147
            L    ++   +++A   +     L    +  +         + ++  A    +    +D
Sbjct: 26  SLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85

Query: 148 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEK 200
               +     A    + G+L E+      A  L     E  +    V S+ E 
Sbjct: 86  IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEA 138

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 54.5 bits (131), Expect = 2e-09
 Identities = 14/115 (12%), Positives = 32/115 (27%), Gaps = 3/115 (2%)

Query: 99  KFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRR 157
                    +    +S  T     + A    +   +++A         LD    + +   
Sbjct: 2   PLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGL 61

Query: 158 ATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEK 212
              R+ +G+   +I    +   ++          AE   L +     +A   L  
Sbjct: 62  GACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAE--CLLQXGELAEAESGLFL 114

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 53.4 bits (128), Expect = 7e-09
 Identities = 16/84 (19%), Positives = 23/84 (27%), Gaps = 1/84 (1%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           LG       ++  AI  YS    +         + A   L+     EAE     A  L  
Sbjct: 61  LGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120

Query: 149 RYIKAYSRRATARKELGKLKESIE 172
              +           L  +K   E
Sbjct: 121 NXPEFXELSTRVSSMLEAIKLKKE 144

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 64.8 bits (158), Expect = 7e-13
 Identities = 14/110 (12%), Positives = 32/110 (29%), Gaps = 1/110 (0%)

Query: 89  ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD 147
               + + + + +EA   +                 A  Y    +FQ+A D    A  L 
Sbjct: 41  SYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG 100

Query: 148 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSL 197
                        +  L    ++ E  E  ++     +   K  + + ++
Sbjct: 101 KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQSYLDAI 150

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 49.0 bits (117), Expect = 2e-07
 Identities = 14/128 (10%), Positives = 32/128 (25%), Gaps = 3/128 (2%)

Query: 86  SEKELGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTEAL 144
           +  E  +          +        A+         + A  +    R +EAE       
Sbjct: 4   NITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLC 63

Query: 145 NLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQ 204
             D   +      A   +   + +++ +    A  L   +        +       +   
Sbjct: 64  IYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQ--CQLRLKAPL 121

Query: 205 KASKTLEK 212
           KA +  E 
Sbjct: 122 KAKECFEL 129

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 65.4 bits (160), Expect = 2e-12
 Identities = 17/96 (17%), Positives = 38/96 (39%), Gaps = 3/96 (3%)

Query: 94  CFKQKKFKEAIDCYSRSIALS--PT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY 150
           C +  +  E++  + +++A    PT  +A  N+ +   K  +F  AE     +L    ++
Sbjct: 87  CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQF 146

Query: 151 IKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186
             A+   A  +   G+L ++    +         Q 
Sbjct: 147 PPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQA 182

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 61.5 bits (150), Expect = 3e-11
 Identities = 18/104 (17%), Positives = 44/104 (42%), Gaps = 2/104 (1%)

Query: 78  EESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEA 136
           E++   +  + +L  E  + + +++A      ++   P   +A+  RA  Y  L+   +A
Sbjct: 2   EKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKA 61

Query: 137 EDDCTEALNLDDRYIKAYSRRATA-RKELGKLKESIEDSEFALR 179
           ++   +AL++     +  +         L +  ES+   + AL 
Sbjct: 62  QESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALA 105

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 56.1 bits (136), Expect = 2e-09
 Identities = 16/94 (17%), Positives = 30/94 (31%), Gaps = 3/94 (3%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
            G    KQ +F  A     RS+A  P    A+   A   +   +  +A+    +  +  +
Sbjct: 119 KGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVE 178

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEP 182
                        K    L  +    E+  +L+ 
Sbjct: 179 VLQADD--LLLGWKIAKALGNAQAAYEYEAQLQA 210

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 53.8 bits (130), Expect = 1e-08
 Identities = 17/71 (23%), Positives = 33/71 (46%)

Query: 117 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEF 176
           +      AM Y++ + +++A     +AL  D +   A+  RA   + L    ++ E    
Sbjct: 8   SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQ 67

Query: 177 ALRLEPQNQEI 187
           AL ++P + EI
Sbjct: 68  ALSIKPDSAEI 78

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 60.9 bits (148), Expect = 6e-12
 Identities = 14/95 (14%), Positives = 32/95 (33%), Gaps = 4/95 (4%)

Query: 99  KFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAY 154
              +A+  Y ++IA        A  Y      +  L  +++AE      +     +    
Sbjct: 5   LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALR 64

Query: 155 SRRATARKELGKLKESIEDSEFALRLEPQNQEIKK 189
              A     LG+ ++ +E     +     ++ I+ 
Sbjct: 65  VFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQS 99

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 45.9 bits (109), Expect = 1e-06
 Identities = 12/70 (17%), Positives = 28/70 (40%), Gaps = 3/70 (4%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNL-- 146
           LG+      ++++A    +  +   P         AM    L R+++  +   + +    
Sbjct: 33  LGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETS 92

Query: 147 DDRYIKAYSR 156
           DD  I++Y +
Sbjct: 93  DDETIQSYKQ 102

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 40.9 bits (96), Expect = 7e-05
 Identities = 13/84 (15%), Positives = 32/84 (38%), Gaps = 5/84 (5%)

Query: 132 RFQEAEDDCTEALNL---DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK 188
              +A     +A+          + Y    +  + LG+ +++       ++  P +Q ++
Sbjct: 5   LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALR 64

Query: 189 KQLAEVKSLYEKEVFQKASKTLEK 212
              A V  LY    +++  + L K
Sbjct: 65  VFYAMV--LYNLGRYEQGVELLLK 86

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 60.0 bits (146), Expect = 9e-12
 Identities = 16/89 (17%), Positives = 25/89 (28%), Gaps = 6/89 (6%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           L  E  K      A+  +   +   P     Y +    Y +L R  +A D   + + +  
Sbjct: 13  LAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFA 177
                         EL   K   E  E  
Sbjct: 73  EEGTQK-----DLSELQDAKLKAEGLEHH 96

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 57.3 bits (139), Expect = 1e-10
 Identities = 16/97 (16%), Positives = 33/97 (34%), Gaps = 7/97 (7%)

Query: 117 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEF 176
                  A  +LK      A     E +  D  Y+  Y       + L +  ++I+    
Sbjct: 7   PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQ 66

Query: 177 ALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEKY 213
            +       E+ ++    K L E +  +  ++ LE +
Sbjct: 67  GI-------EVAREEGTQKDLSELQDAKLKAEGLEHH 96

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 65.0 bits (158), Expect = 9e-12
 Identities = 15/124 (12%), Positives = 41/124 (33%), Gaps = 8/124 (6%)

Query: 97  QKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRF-QEAEDDCTEALNLDDRYIKAY 154
           Q++ ++ +      +  +   A A   +  A      +  EAE   ++A+ L+   ++A+
Sbjct: 81  QEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAW 140

Query: 155 SRRATARKELGKLKESIEDSEFALRLEPQNQE------IKKQLAEVKSLYEKEVFQKASK 208
           ++      + G +  +      AL              + +QL              + +
Sbjct: 141 NQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVR 200

Query: 209 TLEK 212
             + 
Sbjct: 201 QAKL 204

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 64.3 bits (156), Expect = 2e-11
 Identities = 15/112 (13%), Positives = 39/112 (34%), Gaps = 17/112 (15%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKL---------RRFQEAEDDC 140
           LG   +K+     A  C+S ++      V+  N +M   +L         R   ++    
Sbjct: 143 LGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQA 202

Query: 141 TEALNLDDRYIKAYSRRATA--------RKELGKLKESIEDSEFALRLEPQN 184
             A+ +D    +++     A         +     ++++     A +++ + 
Sbjct: 203 KLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKA 254

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 61.9 bits (150), Expect = 1e-10
 Identities = 22/145 (15%), Positives = 50/145 (34%), Gaps = 17/145 (11%)

Query: 87  EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYL--------KLRRFQEAE 137
           + +  +     +   +++     ++ +      ++     AYL          +  Q+A 
Sbjct: 182 QLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQAL 241

Query: 138 DDCTEALNLDDR---YIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV 194
               +A  +D +       +  RAT  K      E++E    A  L+P   E +++  ++
Sbjct: 242 SAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQL 301

Query: 195 KSLYEKEVFQKASKTLEKYGKSGMK 219
                +         LE  GK+  K
Sbjct: 302 LEFLSR--LTSL---LESKGKTKPK 321

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 60.0 bits (145), Expect = 4e-10
 Identities = 18/118 (15%), Positives = 44/118 (37%), Gaps = 8/118 (6%)

Query: 96  KQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYI 151
             K  ++A+  Y+++  +          + NRA  +     + EA +  ++A  LD  + 
Sbjct: 233 NPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWP 292

Query: 152 KAYSRRATARKELGKLKESIEDSEFALRLEPQN-QEIKKQLAEVKSLYEKEVFQKASK 208
           +   R     + L +L   +E      + +P+  Q +   L         +   +++ 
Sbjct: 293 EPQQREQQLLEFLSRLTSLLESKG---KTKPKKLQSMLGSLRPAHLGPCGDGRYQSAS 347

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 56.2 bits (135), Expect = 6e-09
 Identities = 15/106 (14%), Positives = 35/106 (33%), Gaps = 12/106 (11%)

Query: 90  LGNECFKQKKF-KEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD 147
            G        +  EA    S+++ L P    A+      Y K      A    + AL   
Sbjct: 108 KGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC 167

Query: 148 DRYIKAYSRRATARKELGK---------LKESIEDSEFALRLEPQN 184
                +    +   ++L           + +S+  ++ A++++  +
Sbjct: 168 KNK-VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD 212

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 59.4 bits (144), Expect = 2e-11
 Identities = 16/96 (16%), Positives = 29/96 (30%), Gaps = 1/96 (1%)

Query: 89  ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD 147
           E G    K     EA   +       P    A+ +  +   +  +   A      A  LD
Sbjct: 22  EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 81

Query: 148 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQ 183
            + I  ++  A +         ++      L  +PQ
Sbjct: 82  PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 47.8 bits (114), Expect = 3e-07
 Identities = 17/91 (18%), Positives = 30/91 (32%), Gaps = 2/91 (2%)

Query: 122 NRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLE 181
              ++ LKL    EA          +    +A+      + E  K   +I     A  L+
Sbjct: 22  EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 81

Query: 182 PQNQEIKKQLAEVKSLYEKEVFQKASKTLEK 212
           P++  +   LA   S   +     A  +L  
Sbjct: 82  PKDIAVHAALAV--SHTNEHNANAALASLRA 110

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 47.8 bits (114), Expect = 3e-07
 Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 1/62 (1%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           LG    + +K   AI   + +  L P     +A  A+++        A       L    
Sbjct: 57  LGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 116

Query: 149 RY 150
           +Y
Sbjct: 117 QY 118

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 63.4 bits (154), Expect = 3e-11
 Identities = 26/124 (20%), Positives = 41/124 (33%), Gaps = 8/124 (6%)

Query: 96  KQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQ----EAEDDCTEALNLDDRY 150
                + AID   ++I L+P         A+   K+R       E E    EAL      
Sbjct: 187 NWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGV 246

Query: 151 IKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTL 210
                  A   +   +  ++IE  + AL   P N  +  Q+      Y  +VFQ  +   
Sbjct: 247 TDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIG---CCYRAKVFQVMNLRE 303

Query: 211 EKYG 214
               
Sbjct: 304 NGMY 307

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 58.0 bits (140), Expect = 2e-09
 Identities = 27/139 (19%), Positives = 52/139 (37%), Gaps = 10/139 (7%)

Query: 82  PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRF---QEAE 137
           P+   E+          + + A  C+ +++   P      +  A+A  +L  +   Q A 
Sbjct: 136 PELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAI 195

Query: 138 DDCTEALNLDDRYIKAYSRRATA----RKELGKLKESIEDSEFALRLEPQNQEIKKQLAE 193
           D   +A+ L+          A      R+E  +  E  +  E AL   P   ++ +  A+
Sbjct: 196 DPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAK 255

Query: 194 VKSLYEKEVFQKASKTLEK 212
                 K+   KA + L+K
Sbjct: 256 F--YRRKDEPDKAIELLKK 272

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 56.5 bits (136), Expect = 5e-09
 Identities = 9/130 (6%), Positives = 44/130 (33%), Gaps = 5/130 (3%)

Query: 83  DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCT 141
               E  +  +    +    A+    ++   +       +  A  +    +++EAE    
Sbjct: 299 MNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQ 358

Query: 142 EALNLDDRYIKA----YSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSL 197
           +  + +   +               ++    ++I      +++  +++E +K   +++ +
Sbjct: 359 KEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKI 418

Query: 198 YEKEVFQKAS 207
            +  + +  +
Sbjct: 419 AKMRLSKNGA 428

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 54.6 bits (131), Expect = 2e-08
 Identities = 13/117 (11%), Positives = 30/117 (25%), Gaps = 20/117 (17%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLK------------------- 129
                 ++ +  +AI+   +++   P  A  +      Y                     
Sbjct: 253 AAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKL 312

Query: 130 LRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186
           L     A     +A   +D   +  S  A+      + +E+    +     E     
Sbjct: 313 LELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVA 369

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 53.0 bits (127), Expect = 7e-08
 Identities = 16/143 (11%), Positives = 40/143 (27%), Gaps = 22/143 (15%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           L     + ++  E       ++  +P       + A  Y +     +A +   +AL    
Sbjct: 219 LHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP 278

Query: 149 RYIKAYSRRATA-------------------RKELGKLKESIEDSEFALRLEPQNQEIKK 189
                + +                       RK L  +  ++   + A         +  
Sbjct: 279 NNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCS 338

Query: 190 QLAEVKSLYEKEVFQKASKTLEK 212
            LA +      + +++A    +K
Sbjct: 339 ILASL--HALADQYEEAEYYFQK 359

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 51.9 bits (124), Expect = 2e-07
 Identities = 23/139 (16%), Positives = 43/139 (30%), Gaps = 16/139 (11%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSP---------TAVAYANRAMAYLKL--RRFQEAED 138
                +   +  +      +   +           +           LK    + + A+ 
Sbjct: 100 YAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKV 159

Query: 139 DCTEALNLDDRYIKAYSRRATAR---KELGKLKESIEDSEFALRLEPQNQEIKKQLAEV- 194
              +AL    +  +  S  A A          + +I+    A+RL P NQ +K  LA   
Sbjct: 160 CFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKL 219

Query: 195 -KSLYEKEVFQKASKTLEK 212
            K   E E   +  K +E+
Sbjct: 220 HKMREEGEEEGEGEKLVEE 238

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 48.8 bits (116), Expect = 1e-06
 Identities = 13/90 (14%), Positives = 31/90 (34%), Gaps = 9/90 (10%)

Query: 95  FKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAY 154
           ++ K   +AI  +   + ++  +           K+             L+ +    +A 
Sbjct: 383 YQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKI---------AKMRLSKNGADSEAL 433

Query: 155 SRRATARKELGKLKESIEDSEFALRLEPQN 184
              A  ++   K++++ EDSE  L      
Sbjct: 434 HVLAFLQELNEKMQQADEDSERGLESGSLI 463

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 48.4 bits (115), Expect = 2e-06
 Identities = 19/146 (13%), Positives = 49/146 (33%), Gaps = 22/146 (15%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSP----------TAVAYANRAMAYLKLRRFQEAEDD 139
           L      + + + A++C  ++  L            + V + N A  Y  + R  + +  
Sbjct: 57  LAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIY 116

Query: 140 CTEALNLDDRYIKAYSRR----------ATARKELGKLKESIEDSEFALRLEPQNQEIKK 189
             +  ++ +++   Y                +    + + +    E AL  +P+N E   
Sbjct: 117 VDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTS 176

Query: 190 QLAEVKSLYEKEVFQKASKTLEKYGK 215
            LA     Y  + +  +   ++   +
Sbjct: 177 GLAIA--SYRLDNWPPSQNAIDPLRQ 200

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 56.8 bits (136), Expect = 6e-10
 Identities = 27/154 (17%), Positives = 51/154 (33%), Gaps = 24/154 (15%)

Query: 78  EESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------------AVAYANRA 124
            +    A              ++ EA     R++ +S T             A  +A  A
Sbjct: 5   LKEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLA 64

Query: 125 MAYLKLRRFQEAEDDCTEALNLDDR-----------YIKAYSRRATARKELGKLKESIED 173
            A   LR F EA     +AL+  +R           +I A   RA A   LG+  E++ +
Sbjct: 65  EALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPE 124

Query: 174 SEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKAS 207
            +  + +  + +        +  +    + Q  +
Sbjct: 125 FKKVVEMIEERKGETPGKERMMEVAIDRIAQLGA 158

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 52.7 bits (127), Expect = 3e-09
 Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 2/71 (2%)

Query: 89  ELGNECFKQKKFKEAIDCYSRSIALSPT--AVAYANRAMAYLKLRRFQEAEDDCTEALNL 146
           +   E   Q   + A+      +   P     AY     AY KL  +Q+A ++   A+ L
Sbjct: 5   KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64

Query: 147 DDRYIKAYSRR 157
           +       +R+
Sbjct: 65  NPDSPALQARK 75

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 49.7 bits (119), Expect = 4e-08
 Identities = 14/85 (16%), Positives = 37/85 (43%), Gaps = 3/85 (3%)

Query: 122 NRAMAYLKLRRFQEAEDDCTEALNLD-DRYIKAYSRRATARKELGKLKESIEDSEFALRL 180
                 +     + A     E L  +     +AY     A ++LG  ++++ + + A+ L
Sbjct: 5   KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64

Query: 181 EPQNQEI--KKQLAEVKSLYEKEVF 203
            P +  +  +K + ++ + Y K+++
Sbjct: 65  NPDSPALQARKMVMDILNFYNKDMY 89

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 54.0 bits (129), Expect = 2e-08
 Identities = 19/109 (17%), Positives = 42/109 (38%), Gaps = 1/109 (0%)

Query: 97  QKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYS 155
            +K ++A   +         T +    +A  ++   R++ AE    EAL+ D  + +   
Sbjct: 179 GEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLI 238

Query: 156 RRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQ 204
                 + LGK  E        L+   ++    K+    ++ +++ V Q
Sbjct: 239 NLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYRAKENDFDRLVLQ 287

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 48.6 bits (115), Expect = 1e-06
 Identities = 15/114 (13%), Positives = 30/114 (26%), Gaps = 3/114 (2%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPTAV-AYANRAMAYLKL--RRFQEAEDDCTEALNL 146
                 K  +   A     +       A       A   L     + Q+A     E  + 
Sbjct: 136 TVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK 195

Query: 147 DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEK 200
               +   + +A      G+ + +    + AL  +  + E    L  +     K
Sbjct: 196 CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGK 249

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 40.9 bits (95), Expect = 4e-04
 Identities = 21/153 (13%), Positives = 44/153 (28%), Gaps = 8/153 (5%)

Query: 62  SRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYA 121
           SR    V+ +   +       + T      +  F  +    A+    +  +L       A
Sbjct: 79  SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLE----CMA 134

Query: 122 NRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG--KLKESIEDSEFALR 179
                 LKL R   A  +  +  + D+         A      G  KL+++    +    
Sbjct: 135 MTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMAD 194

Query: 180 LEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEK 212
                  +    A       +  ++ A   L++
Sbjct: 195 KCSPTLLLLNGQAAC--HMAQGRWEAAEGVLQE 225

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 54.3 bits (130), Expect = 2e-08
 Identities = 13/96 (13%), Positives = 33/96 (34%), Gaps = 4/96 (4%)

Query: 95  FKQKKFKEAIDCYSRSIALSP---TAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYI 151
             +K+           + L      ++ Y  +A++ L   +  E+       ++L+  ++
Sbjct: 252 LDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWL 311

Query: 152 KAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI 187
             Y       +  G  +E+ +    A  L P    +
Sbjct: 312 -NYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTL 346

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 47.8 bits (113), Expect = 3e-06
 Identities = 12/58 (20%), Positives = 18/58 (31%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLD 147
                  + K  E+    +  I L  + + Y      Y      +EA D    A NL 
Sbjct: 283 KAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 45.9 bits (108), Expect = 1e-05
 Identities = 16/99 (16%), Positives = 28/99 (28%), Gaps = 11/99 (11%)

Query: 95  FKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTE----------A 143
              K    A +     +  SP    A A +A+  +        ++               
Sbjct: 210 GDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269

Query: 144 LNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEP 182
           L   +     Y  +A +    GK  ES +     + LE 
Sbjct: 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM 308

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 52.8 bits (126), Expect = 8e-08
 Identities = 10/98 (10%), Positives = 32/98 (32%), Gaps = 7/98 (7%)

Query: 96  KQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAY 154
             +   + ++  +  +        A+ +R     + + +        + L  D R    +
Sbjct: 178 WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVW 237

Query: 155 SRRATARKELGK------LKESIEDSEFALRLEPQNQE 186
           ++R               L+  ++ +   ++L P N+ 
Sbjct: 238 NQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNES 275

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 20/128 (15%), Positives = 35/128 (27%), Gaps = 17/128 (13%)

Query: 84  ATSEKELGNECFKQKKFKEAIDCYSRSIAL-------SPTAVAYANRAMAYLKLRRFQEA 136
           + +   LG       +F EA   +             +    A     M       +  A
Sbjct: 26  SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAA 85

Query: 137 EDDCTEALNL-----DDRYIKA--YSRRATARKELGKLKESIEDSEFALRLEPQNQEIKK 189
                E   L     +D    +      AT     G L  + ++ E +L      Q+   
Sbjct: 86  RRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVY---AQQADD 142

Query: 190 QLAEVKSL 197
           Q+A   + 
Sbjct: 143 QVAIACAF 150

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 21/120 (17%), Positives = 44/120 (36%), Gaps = 14/120 (11%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-----AVAYANRAMAYLKLRRFQEAEDDCTEAL 144
            G    K    +  +  +  ++ +        +  Y+    AY  L  + +A +     L
Sbjct: 15  EGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL 74

Query: 145 NL----DDRYIKA--YSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLY 198
            L     D+  +A          K LG   E+I   +  L +   ++E+  ++ E ++LY
Sbjct: 75  TLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDI---SRELNDKVGEARALY 131

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 24/142 (16%), Positives = 43/142 (30%), Gaps = 24/142 (16%)

Query: 76  MNEESTPD-ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------AVAYANRAMAY 127
           +  E     +    +LGN  F    + +A++ +   + L+ T       A A  N     
Sbjct: 38  VGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTL 97

Query: 128 LKLRRFQEAEDDCTEALNLDDRYIKAYSRRATAR---------KELGKLKESIEDSEFAL 178
             L  F EA   C   L++     +   +   AR            GK        +   
Sbjct: 98  KVLGNFDEAIVCCQRHLDI---SRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGE 154

Query: 179 RLEPQNQEIKKQLAEVKSLYEK 200
             E     ++  +      YE+
Sbjct: 155 FPEEVRDALQAAV----DFYEE 172

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 24/122 (19%), Positives = 51/122 (41%), Gaps = 16/122 (13%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALS-------PTAVAYANRAMAYLKLRRFQEAEDDCTE 142
           LGN  +    F++A+  + + + ++           AY+N   AY+ L  F+ A +   +
Sbjct: 193 LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 252

Query: 143 ALN----LDDRYIKA--YSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS 196
            L     L DR ++A            L   +++I+     L +    QE+  ++ E ++
Sbjct: 253 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI---AQELNDRIGEGRA 309

Query: 197 LY 198
            +
Sbjct: 310 CW 311

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 43.1 bits (102), Expect = 9e-05
 Identities = 22/122 (18%), Positives = 44/122 (36%), Gaps = 19/122 (15%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALS-------PTAVAYANRAMAYLKLRRFQEAEDDCTE 142
           LGN     + +++AID + + +A++           A  +   AY  L    +A     +
Sbjct: 273 LGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 332

Query: 143 ALN----LDDRYIKAYSRR--ATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS 196
            L     + D+  +  +R   +  +  LG    +         +  +N EI   L  V+ 
Sbjct: 333 HLEISREVGDKSGELTARLNLSDLQMVLGLSYST------NNSIMSENTEIDSSLNGVRP 386

Query: 197 LY 198
             
Sbjct: 387 KL 388

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 20/120 (16%), Positives = 44/120 (36%), Gaps = 14/120 (11%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-----AVAYANRAMAYLKLRRFQEAEDDCTEAL 144
            G    K    +  +  +  ++ +        +  Y+    AY  L  + +A +     L
Sbjct: 11  EGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL 70

Query: 145 N----LDDRYIKA--YSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLY 198
                + D+  +A          K LG   E+I   +  L +   ++E+  ++ E ++LY
Sbjct: 71  TLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDI---SRELNDKVGEARALY 127

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 47.6 bits (114), Expect = 3e-06
 Identities = 25/142 (17%), Positives = 44/142 (30%), Gaps = 24/142 (16%)

Query: 76  MNEESTPD-ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------AVAYANRAMAY 127
           +  E     +    +LGN  F    + +A++ +   + L+ T       A A  N     
Sbjct: 34  VGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTL 93

Query: 128 LKLRRFQEAEDDCTEALNLDDRYIKAYSRRATAR---------KELGKLKESIEDSEFAL 178
             L  F EA   C   L++     +   +   AR            GK        +   
Sbjct: 94  KVLGNFDEAIVCCQRHLDI---SRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGE 150

Query: 179 RLEPQNQEIKKQLAEVKSLYEK 200
             E     ++  +     LYE+
Sbjct: 151 FPEDVRNALQAAV----DLYEE 168

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 44.5 bits (106), Expect = 3e-05
 Identities = 25/122 (20%), Positives = 52/122 (42%), Gaps = 16/122 (13%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALS-------PTAVAYANRAMAYLKLRRFQEAEDDCTE 142
           LGN  +    F++A+  + + + ++           AY+N   AY+ L  F+ A +   +
Sbjct: 189 LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248

Query: 143 ALN----LDDRYIKA--YSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS 196
            L     L DR ++A            L   +++I+     L +    QE+K ++ E ++
Sbjct: 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI---AQELKDRIGEGRA 305

Query: 197 LY 198
            +
Sbjct: 306 CW 307

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 39.9 bits (94), Expect = 8e-04
 Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 7/64 (10%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSP-------TAVAYANRAMAYLKLRRFQEAEDDCTE 142
           LGN     + +++AID + + +A++           A  +   AY  L    +A     +
Sbjct: 269 LGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 328

Query: 143 ALNL 146
            L +
Sbjct: 329 HLEI 332

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 48.7 bits (116), Expect = 4e-07
 Identities = 23/128 (17%), Positives = 44/128 (34%), Gaps = 8/128 (6%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPTAV-AYANRAMAYLKL---RRFQEAEDDCTEALN 145
           LG     Q  +  ++  Y +++ L       YA  A             +      +AL 
Sbjct: 50  LGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALA 109

Query: 146 LDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQK 205
           LD   I A    A+         ++IE  +  + L        + +   +S+   ++ Q+
Sbjct: 110 LDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLV---ESINMAKLLQR 166

Query: 206 ASKTLEKY 213
            S  LE +
Sbjct: 167 RSD-LEHH 173

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 49.6 bits (119), Expect = 9e-07
 Identities = 23/133 (17%), Positives = 40/133 (30%), Gaps = 9/133 (6%)

Query: 76  MNEESTPD-ATSEKELGNECFKQKKFKEAIDCYSRSIAL-------SPTAVAYANRAMAY 127
              E     +    +LGN  F    + +A+  +   + L          A +  N     
Sbjct: 77  AGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTL 136

Query: 128 LKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI 187
             + RF EA   C   L L  R +        A   LG +  +               ++
Sbjct: 137 KVMGRFDEAAICCERHLTL-ARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDV 195

Query: 188 KKQLAEVKSLYEK 200
           K+ L      Y++
Sbjct: 196 KEALTRAVEFYQE 208

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 22/125 (17%), Positives = 49/125 (39%), Gaps = 22/125 (17%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIAL-------SPTAVAYANRAMAYLKLRRFQEAEDDCTE 142
           LGN  +    F+ AI+ +   + +       +    A +N   +++ L +F++A +    
Sbjct: 229 LGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288

Query: 143 ALNLDDRYIKAYSRRATAR---------KELGKLKESIEDSEFALRLEPQNQEIKKQLAE 193
            L L    ++   R   A+           L +   +IE     L +    QE+  ++ E
Sbjct: 289 TLAL---AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAI---AQELGDRIGE 342

Query: 194 VKSLY 198
            ++ +
Sbjct: 343 ARACW 347

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 46.3 bits (110), Expect = 7e-06
 Identities = 25/181 (13%), Positives = 58/181 (32%), Gaps = 26/181 (14%)

Query: 58  GNSYSRNYDP---VSHISSSL-----MNEESTPDATSEKELGNECFKQKKFKEAIDCYSR 109
             +Y         + HI  +L         S     S   +       K + +A+     
Sbjct: 148 AEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEA 207

Query: 110 SIALSP-------TAVAYANRAMAYLKLRRFQEAEDDCTEALNL-----DDRYIKAYSRR 157
           ++ L+         A++  N A +Y +    Q A +   +A  +      D   K     
Sbjct: 208 ALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGL 267

Query: 158 ATARKELGKLKESIEDSEFALRL--EPQNQEIKKQLAEVKSLY----EKEVFQKASKTLE 211
           +    + G+ +++ +  E  L       ++  K+    ++++Y    ++          E
Sbjct: 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFE 327

Query: 212 K 212
           K
Sbjct: 328 K 328

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 12/112 (10%), Positives = 34/112 (30%), Gaps = 3/112 (2%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPTA--VAYANRAMAYLKLRRFQEAEDDCTEALNLD 147
           L     K  + ++A       +          Y    +    + +    E    + L+  
Sbjct: 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYF 326

Query: 148 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYE 199
           ++    ++      +    + ES    E A     +  + ++ + + + LY 
Sbjct: 327 EK-KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECLYA 377

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 44.8 bits (107), Expect = 2e-05
 Identities = 28/109 (25%), Positives = 43/109 (39%), Gaps = 18/109 (16%)

Query: 82  PD-ATSEKELGNECFKQKKFKEAIDCYSRSIALS--------P-TAVAYANRAMAYLKLR 131
           PD AT    L      Q K+KEA    + ++A+         P  A    N A+ Y K  
Sbjct: 40  PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG 99

Query: 132 RFQEAEDDCTEALNLDDR--------YIKAYSRRATARKELGKLKESIE 172
           +++EAE  C  AL + ++          K  +  A   +  GK +E   
Sbjct: 100 KYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEY 148

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 44.1 bits (105), Expect = 4e-05
 Identities = 26/119 (21%), Positives = 38/119 (31%), Gaps = 19/119 (15%)

Query: 82  PD-ATSEKELGNECFKQKKFKEAIDCYSRSIA-----LSP----TAVAYANRAMAYLKLR 131
           PD A     L   C  Q K +E    Y R++      L P     A    N A  YLK  
Sbjct: 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQG 183

Query: 132 RFQEAEDDCTEALNLDDRYI---------KAYSRRATARKELGKLKESIEDSEFALRLE 181
           ++Q+AE    E L                  +       +   K ++S    E+    +
Sbjct: 184 KYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYK 242

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 44.8 bits (107), Expect = 2e-05
 Identities = 27/117 (23%), Positives = 38/117 (32%), Gaps = 19/117 (16%)

Query: 82  PD-ATSEKELGNECFKQKKFKEAIDCYSRSIA-----LSP----TAVAYANRAMAYLKLR 131
           PD A     L   C  Q K++E    Y R++      L P     A    N A  YLK  
Sbjct: 150 PDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQG 209

Query: 132 RFQEAEDDCTEALNLDDRYI---------KAYSRRATARKELGKLKESIEDSEFALR 179
           +F++AE    E L                  +       +  GK K+     E+   
Sbjct: 210 KFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW 266

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 43.3 bits (103), Expect = 7e-05
 Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 18/109 (16%)

Query: 82  PD-ATSEKELGNECFKQKKFKEAIDCYSRSIALS--------P-TAVAYANRAMAYLKLR 131
           PD AT    L      Q K+K+A +  + ++A+         P  A    N A+ Y K  
Sbjct: 66  PDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG 125

Query: 132 RFQEAEDDCTEALNLDDR--------YIKAYSRRATARKELGKLKESIE 172
           +++EAE  C  AL + ++          K  +  A   +  GK +E   
Sbjct: 126 KYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEY 174

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 40.2 bits (95), Expect = 6e-04
 Identities = 16/109 (14%), Positives = 38/109 (34%), Gaps = 18/109 (16%)

Query: 82  PD-ATSEKELGNECFKQKKFKEAIDCYSRSIALS--------P-TAVAYANRAMAYLKLR 131
           P    +   L  +   Q +++ A+    +++           P  A      A+ Y    
Sbjct: 24  PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQN 83

Query: 132 RFQEAEDDCTEALNLDDR--------YIKAYSRRATARKELGKLKESIE 172
           ++++A +   +AL + ++             +  A    + GK KE+  
Sbjct: 84  KYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEP 132

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 44.4 bits (105), Expect = 3e-05
 Identities = 18/168 (10%), Positives = 52/168 (30%), Gaps = 27/168 (16%)

Query: 61  YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSP----- 115
           Y  +      +                          K++++AI  + ++ +++      
Sbjct: 173 YKEHEAYNIRLLQCHSL------------FATNFLDLKQYEDAISHFQKAYSMAEAEKQP 220

Query: 116 --TAVAYANRAMAYLKLRRFQEAEDDCTEALNLDD------RYIKAYSRRATARKELGKL 167
                   N  +      ++++A      A+ + +         +AY        +LGK+
Sbjct: 221 QLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKI 280

Query: 168 KESIEDSEFALRL--EPQNQEIKKQLAEVKSLYEKEVFQKASKTLEKY 213
            ++ E     +    +  +     +   +KSLY     ++A +    +
Sbjct: 281 DKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDF 328

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 20/115 (17%), Positives = 44/115 (38%), Gaps = 3/115 (2%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPTA--VAYANRAMAYLKLRRFQEAEDDCTEALNLD 147
           +    +K  K  +A + +S+ +A S  A  V Y +       L      E+      +  
Sbjct: 270 ITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFL 329

Query: 148 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEV 202
           +     Y+       ++ K     ++ + A     + +++++ +    SLYE EV
Sbjct: 330 ES-KMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGGVSLYEIEV 383

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 42.9 bits (102), Expect = 3e-05
 Identities = 24/124 (19%), Positives = 51/124 (41%), Gaps = 22/124 (17%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIAL-------SPTAVAYANRAMAYLKLRRFQEAEDDCTE 142
           LGN  +    F++A+  + + + +       +   +AY+N   AY+ L  F+ A +   +
Sbjct: 15  LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKK 74

Query: 143 ALNLDDRYIKAYSRRATAR---------KELGKLKESIEDSEFALRLEPQNQEIKKQLAE 193
            L L     +   R   A+           L   +++I+     L +    QE+K ++ E
Sbjct: 75  TLLL---ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI---AQELKDRIGE 128

Query: 194 VKSL 197
            ++ 
Sbjct: 129 GRAC 132

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 8e-05
 Identities = 40/301 (13%), Positives = 89/301 (29%), Gaps = 104/301 (34%)

Query: 120 YANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALR 179
           Y  + +  +    F +         N D + ++   +   +++E+  +  S +     LR
Sbjct: 16  YQYKDILSVFEDAFVD---------NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66

Query: 180 L----EPQNQEIKKQLAE---------VKSLYEKEVFQKASKTLEKYGKSGMKV-NGHEV 225
           L      + +E+ ++  E         + S  + E  Q +  T   Y +   ++ N ++V
Sbjct: 67  LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT-RMYIEQRDRLYNDNQV 125

Query: 226 RAVRNTIQKTGVAEIQD-LTISKKTENKNLRDESKT--EGQRDGSGANATHISGLDKRNH 282
            A  N  +     +++  L          LR       +G   GSG              
Sbjct: 126 FAKYNVSRLQPYLKLRQAL--------LELRPAKNVLIDGVL-GSG-------------- 162

Query: 283 RTKKAVLDASVQELATRATSRAVAEAAKNITPPKSAYEFEVSWRGFAGDH------ALQA 336
              K  +                 +   +    +   +F++ W      +       +  
Sbjct: 163 ---KTWV---------------ALDVCLSY-KVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203

Query: 337 RLLKAISPNALPQI-------------------------FKNALSASILIDI--VKVVAT 369
           +LL  I PN   +                          ++N L   +L+++   K    
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL--LVLLNVQNAKAWNA 261

Query: 370 F 370
           F
Sbjct: 262 F 262

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	372
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.86
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.85
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.79
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.79
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.79
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.79
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.79
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.78
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.78
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.78
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.77
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.76
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.76
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.75
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.75
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.75
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.74
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.73
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.73
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.72
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.71
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.71
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.7
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.7
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.69
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.69
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.68
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.68
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.68
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.68
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.67
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.67
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.67
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.67
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.67
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.66
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.66
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.65
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.65
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.65
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.65
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.65
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.64
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.64
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.64
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.64
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.64
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.63
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.63
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.63
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.63
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.63
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.63
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.62
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.62
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.62
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.62
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.62
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.62
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.62
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.62
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.61
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.6
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.6
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.6
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.6
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.6
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.59
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.58
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.58
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.58
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.58
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.58
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.58
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.57
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.57
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.57
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.56
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.56
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.55
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.55
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.55
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.54
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.54
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.54
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.54
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.54
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.54
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.54
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.54
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.54
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.53
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.53
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.52
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.52
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.51
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.51
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.51
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.5
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.49
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.49
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.48
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.48
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.47
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.47
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.47
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.46
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.46
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.46
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.46
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.46
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.45
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.45
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.45
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.45
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.45
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.44
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.44
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.44
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.44
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.43
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.43
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.42
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.42
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.41
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.41
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.41
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.4
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.39
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.39
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.39
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.38
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.38
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.37
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.37
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.37
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.37
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.36
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.36
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.36
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.36
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.36
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.35
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.35
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.35
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.34
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.34
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.34
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.34
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.33
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.32
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.32
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.31
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.31
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.3
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.3
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.29
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.29
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.29
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.28
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.28
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.26
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.26
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.26
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.25
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.25
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.25
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.24
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.24
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.23
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.23
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.22
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.21
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.21
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.18
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.17
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.17
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.15
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.15
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.15
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.13
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.12
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.11
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.11
1klx_A	138	Cysteine rich protein B; structural genomics, heli	99.05
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.04
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.04
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.98
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.94
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.9
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.87
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.86
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.84
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.83
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.82
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.78
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.77
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.76
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.76
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.72
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.7
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.7
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.69
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.69
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.67
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.65
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.58
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.55
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.52
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.52
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.48
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.4
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.39
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.37
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.27
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.25
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.1
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.94
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.94
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.87
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.84
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.78
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.4
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.4
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.38
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.32
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.17
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	97.04
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	96.99
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	96.94
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.59
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	96.45
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	96.0
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	95.37
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	95.37
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	95.34
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	95.11
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	94.72
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	94.36
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	94.34
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	94.25
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	93.83
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	93.56
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	93.53
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	93.3
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	93.17
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	92.89
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	92.16
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	90.72
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	88.98
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	88.18
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	86.83
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	82.91
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	82.38
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	81.37
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	81.06

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.86  E-value=4.7e-21  Score=156.12  Aligned_cols=119  Identities=31%  Similarity=0.515  Sum_probs=111.3

Q ss_pred             hhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHH
Q 017383           74 SLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIK  152 (372)
Q Consensus        74 al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~  152 (372)
                      +..++|.  .+..++++|+.|++.|+|++|+.+|+++++++|. +.+|+++|.||..+|++++|+.+|+++++++|+++.
T Consensus         5 ~a~inP~--~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~   82 (126)
T 4gco_A            5 LAYINPE--LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIK   82 (126)
T ss_dssp             --CCCHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHCHH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhH
Confidence            4457777  5666889999999999999999999999999998 999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHH
Q 017383          153 AYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV  194 (372)
Q Consensus       153 a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a  194 (372)
                      +|+++|.++..+|++++|+.+|+++++++|++.+++..+..+
T Consensus        83 a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~  124 (126)
T 4gco_A           83 GYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC  124 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence            999999999999999999999999999999999998887765

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.85  E-value=3.1e-21  Score=161.86  Aligned_cols=139  Identities=12%  Similarity=0.033  Sum_probs=123.6

Q ss_pred             CCCCCC-CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhc
Q 017383           54 PSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR  131 (372)
Q Consensus        54 ~~~~~y-~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g  131 (372)
                      ++|..| ..|++++|+..+++++..+|..  ...++.+|.+|+..|+|++|+.+|+++++++|+ +.+|+++|.+|..+|
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~--~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~   79 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTPSPRQK--SIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE   79 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCSHHHH--HTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HhHHHHHHcChHHHHHHHHHHhcccCccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            467777 6799999999999999999884  444779999999999999999999999999999 999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHccCCCcHHHHHHHHHH
Q 017383          132 RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIED-SEFALRLEPQNQEIKKQLAEV  194 (372)
Q Consensus       132 ~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~-~~~al~l~P~~~~~~~~l~~a  194 (372)
                      ++++|+.+|+++++++|+++.+|+++|.++..+|++++|... ++++++++|+++.++.....+
T Consensus        80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~l  143 (150)
T 4ga2_A           80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQL  143 (150)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence            999999999999999999999999999999999999887765 599999999999887665544

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.79  E-value=1.9e-18  Score=153.44  Aligned_cols=145  Identities=21%  Similarity=0.232  Sum_probs=126.4

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHh--------
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKL--------  130 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~--------  130 (372)
                      ..|++++|+..|++++..+|++..+  +..+|.++...|++++|+.+|+++++++|+ ..++.++|.++..+        
T Consensus        17 ~~g~~~~A~~~~~~al~~~p~~~~a--~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~   94 (217)
T 2pl2_A           17 ALGRYDAALTLFERALKENPQDPEA--LYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRE   94 (217)
T ss_dssp             HTTCHHHHHHHHHHHHTTSSSCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhc
Confidence            6789999999999999999996555  669999999999999999999999999998 99999999999999        


Q ss_pred             ---cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHH----------HHHHHHH
Q 017383          131 ---RRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQ----------LAEVKSL  197 (372)
Q Consensus       131 ---g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~----------l~~a~~~  197 (372)
                         |++++|+..|+++++++|+++.+++++|.++..+|++++|+..|++++.++ +++.++..          +.+|...
T Consensus        95 ~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~  173 (217)
T 2pl2_A           95 RGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQ  173 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             ccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHH
Confidence               999999999999999999999999999999999999999999999999999 88877544          4455555


Q ss_pred             HHHHHHhhhh
Q 017383          198 YEKEVFQKAS  207 (372)
Q Consensus       198 ~~~~~~~~~~  207 (372)
                      |++++...|.
T Consensus       174 ~~~al~~~P~  183 (217)
T 2pl2_A          174 YAKALEQAPK  183 (217)
T ss_dssp             HHHHHHHSTT
T ss_pred             HHHHHHhCCC
Confidence            5555555543

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.79  E-value=1e-18  Score=147.03  Aligned_cols=115  Identities=11%  Similarity=0.050  Sum_probs=108.8

Q ss_pred             HHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 017383           69 SHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD  147 (372)
Q Consensus        69 ~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~  147 (372)
                      ..+.+++.++|++  +..++.+|.+++..|+|++|+.+|++++.++|+ +.+|+++|.||..+|+|++|+.+|++|+.++
T Consensus        23 ~~l~~al~l~p~~--~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~  100 (151)
T 3gyz_A           23 ATLKDINAIPDDM--MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG  100 (151)
T ss_dssp             CCTGGGCCSCHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             CCHHHHhCCCHHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC
Confidence            3578889999984  445789999999999999999999999999998 9999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcH
Q 017383          148 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ  185 (372)
Q Consensus       148 p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~  185 (372)
                      |+++.+|+++|.++..+|++++|+.+|++++.+.|+..
T Consensus       101 P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A          101 KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            99999999999999999999999999999999999875

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.79  E-value=6.2e-19  Score=156.68  Aligned_cols=173  Identities=15%  Similarity=0.146  Sum_probs=147.4

Q ss_pred             HHHHHhhHHHHHHHHHHHHHHhhhcCCCCCccccccccccCCCCCCCC-CCCCchhhHHHHHhhhhcCCCCchHHHHHHH
Q 017383           12 FQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKEL   90 (372)
Q Consensus        12 l~~~~~~l~~~e~~ik~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~   90 (372)
                      +...+....+|++++......+...+.....         ....|..| ..|++++|+..|+++++++|++..+  +..+
T Consensus        11 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a---------~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a--~~~l   79 (217)
T 2pl2_A           11 LGVQLYALGRYDAALTLFERALKENPQDPEA---------LYWLARTQLKLGLVNPALENGKTLVARTPRYLGG--YMVL   79 (217)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTSSSCHHH---------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH--HHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH--HHHH
Confidence            3445556678888888888877655511110         01122233 7899999999999999999996555  6799


Q ss_pred             HHHHHHh-----------hcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 017383           91 GNECFKQ-----------KKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRA  158 (372)
Q Consensus        91 g~~~~~~-----------g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg  158 (372)
                      |.++...           |++++|+.+|+++++++|+ ..++.++|.+|..+|++++|+..|+++++++ +++.+++++|
T Consensus        80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la  158 (217)
T 2pl2_A           80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALA  158 (217)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHH
T ss_pred             HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHH
Confidence            9999999           9999999999999999999 9999999999999999999999999999999 9999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHH
Q 017383          159 TARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS  196 (372)
Q Consensus       159 ~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~  196 (372)
                      .++..+|++++|+..|++++.++|++..++..+..+..
T Consensus       159 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~  196 (217)
T 2pl2_A          159 ELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALL  196 (217)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            99999999999999999999999999998877766543

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.79  E-value=4.6e-18  Score=145.80  Aligned_cols=150  Identities=17%  Similarity=0.197  Sum_probs=134.5

Q ss_pred             CCCC-CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCH
Q 017383           56 PSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRF  133 (372)
Q Consensus        56 ~~~y-~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~  133 (372)
                      |..| ..|++++|+..|+++++++|++..+  +..+|.+|...|++++|+.++.+++..+|+ ..++..+|.++...+++
T Consensus        12 G~~~~~~g~~~~A~~~~~~al~~~p~~~~~--~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (184)
T 3vtx_A           12 GDKKRTKGDFDGAIRAYKKVLKADPNNVET--LLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEK   89 (184)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCH
Confidence            3344 6799999999999999999996555  779999999999999999999999999998 99999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHH----------HHHHHHHHHHHHHHH
Q 017383          134 QEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK----------KQLAEVKSLYEKEVF  203 (372)
Q Consensus       134 ~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~----------~~l~~a~~~~~~~~~  203 (372)
                      +.|+..+.+++.++|.+..++..+|.++..+|++++|+..|+++++++|++..++          +.+.+|...|++++.
T Consensus        90 ~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  169 (184)
T 3vtx_A           90 QAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALE  169 (184)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999886          445555666666665


Q ss_pred             hhhh
Q 017383          204 QKAS  207 (372)
Q Consensus       204 ~~~~  207 (372)
                      .+|.
T Consensus       170 ~~p~  173 (184)
T 3vtx_A          170 KEEK  173 (184)
T ss_dssp             TTHH
T ss_pred             CCcc
Confidence            5543

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.79  E-value=8.8e-19  Score=146.57  Aligned_cols=131  Identities=12%  Similarity=0.052  Sum_probs=118.0

Q ss_pred             hHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 017383           67 PVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALN  145 (372)
Q Consensus        67 A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~  145 (372)
                      +-..|++++.++|.  ....++.+|.+++..|+|++|+.+|++++.++|+ +.+|+++|.+|..+|++++|+.+|++++.
T Consensus         6 ~~~~~~~al~~~p~--~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   83 (148)
T 2vgx_A            6 GGGTIAMLNEISSD--TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV   83 (148)
T ss_dssp             CCCSHHHHTTCCHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHcCCHh--hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            34568999999988  4555779999999999999999999999999998 99999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHH
Q 017383          146 LDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYE  199 (372)
Q Consensus       146 l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~~~  199 (372)
                      ++|+++.+++++|.++..+|++++|+.+|++++.++|+++........+...+.
T Consensus        84 l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~  137 (148)
T 2vgx_A           84 MDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLE  137 (148)
T ss_dssp             HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred             cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998776555555554443

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.78  E-value=1.6e-18  Score=180.34  Aligned_cols=137  Identities=25%  Similarity=0.276  Sum_probs=128.0

Q ss_pred             CCCC-CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCH
Q 017383           56 PSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRF  133 (372)
Q Consensus        56 ~~~y-~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~  133 (372)
                      |..| .+|++++|+.+|+++++++|++..+  +.++|.+|..+|++++|+.+|+++++++|+ +.+|+++|.+|..+|++
T Consensus        16 G~~~~~~G~~~eAi~~~~kAl~l~P~~~~a--~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~   93 (723)
T 4gyw_A           16 ANIKREQGNIEEAVRLYRKALEVFPEFAAA--HSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDV   93 (723)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCSCCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence            3344 7899999999999999999995555  779999999999999999999999999999 99999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHH
Q 017383          134 QEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV  194 (372)
Q Consensus       134 ~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a  194 (372)
                      ++|+.+|++|++++|+++.+|+++|.++..+|++++|+.+|+++++++|++..++..+..+
T Consensus        94 ~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~  154 (723)
T 4gyw_A           94 QGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHC  154 (723)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhH
Confidence            9999999999999999999999999999999999999999999999999999987665544

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.78  E-value=2.4e-18  Score=166.43  Aligned_cols=136  Identities=14%  Similarity=0.068  Sum_probs=127.5

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhc-HHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKK-FKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE  137 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~-~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~  137 (372)
                      ..|++++|+..|++++.++|.+..+  |+.+|.++...|+ |++|+.+|++++.++|+ ..+|+++|.++..+|++++|+
T Consensus       109 ~~g~~~~Al~~~~~al~l~P~~~~a--~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl  186 (382)
T 2h6f_A          109 RDERSERAFKLTRDAIELNAANYTV--WHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQEL  186 (382)
T ss_dssp             HTCCCHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHH
T ss_pred             HCCChHHHHHHHHHHHHhCccCHHH--HHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHH
Confidence            4588999999999999999995555  7799999999997 99999999999999999 999999999999999999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHHH
Q 017383          138 DDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSL  197 (372)
Q Consensus       138 ~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~  197 (372)
                      .+|++||.++|++..+|+++|.++..+|++++|+.+|++++.++|++..++..++.+...
T Consensus       187 ~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~  246 (382)
T 2h6f_A          187 EFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN  246 (382)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999998777666443

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.78  E-value=1.6e-18  Score=148.69  Aligned_cols=165  Identities=19%  Similarity=0.238  Sum_probs=143.3

Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHhhhcCCCCCccccccccccCCCCCCCC-CCCCchhhHHHHHhhhhcCCCCchHHHHHH
Q 017383           11 DFQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKE   89 (372)
Q Consensus        11 ~l~~~~~~l~~~e~~ik~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~~A~~~~~~al~~~p~~~~a~~~~~   89 (372)
                      .++......++|+++++..++.+...+....         +...+|..| ..|++++|+..+.+++...|....+  +..
T Consensus        10 ~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~   78 (184)
T 3vtx_A           10 DIGDKKRTKGDFDGAIRAYKKVLKADPNNVE---------TLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEA--YYI   78 (184)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHH--HHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHH--HHH
Confidence            4566677788999999988888876652111         011223334 7899999999999999999985555  669


Q ss_pred             HHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 017383           90 LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLK  168 (372)
Q Consensus        90 ~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~  168 (372)
                      +|.++...++++.|+.++.+++.++|. ..++..+|.+|..+|++++|+.+|+++++++|+++.+|+++|.++..+|+++
T Consensus        79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~  158 (184)
T 3vtx_A           79 LGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD  158 (184)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence            999999999999999999999999999 9999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHccCCCcHH
Q 017383          169 ESIEDSEFALRLEPQNQE  186 (372)
Q Consensus       169 ~A~~~~~~al~l~P~~~~  186 (372)
                      +|+.+|+++++++|++..
T Consensus       159 ~A~~~~~~al~~~p~~a~  176 (184)
T 3vtx_A          159 EAVKYFKKALEKEEKKAK  176 (184)
T ss_dssp             HHHHHHHHHHHTTHHHHH
T ss_pred             HHHHHHHHHHhCCccCHH
Confidence            999999999999998653

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.77  E-value=8.4e-19  Score=147.61  Aligned_cols=118  Identities=20%  Similarity=0.175  Sum_probs=108.6

Q ss_pred             hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---
Q 017383           83 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------------AVAYANRAMAYLKLRRFQEAEDDCTEALNL---  146 (372)
Q Consensus        83 ~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-------------~~~~~~la~~~~~~g~~~eA~~~~~~Al~l---  146 (372)
                      .+..++++|+.++..|+|++|+.+|+++|+++|+             +.+|.|+|.|+..+|+|++|+.+|++||.+   
T Consensus        10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~   89 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   89 (159)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence            4566889999999999999999999999999987             239999999999999999999999999999   


Q ss_pred             ----CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHH
Q 017383          147 ----DDRYIKAY----SRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEK  200 (372)
Q Consensus       147 ----~p~~~~a~----~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~~~~  200 (372)
                          +|++..+|    +++|.++..+|++++|+.+|++++.++|++..+...+..+......
T Consensus        90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~~  151 (159)
T 2hr2_A           90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAID  151 (159)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHH
T ss_pred             cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence                99999999    9999999999999999999999999999998887777777665543

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.76  E-value=9.5e-18  Score=136.46  Aligned_cols=110  Identities=30%  Similarity=0.450  Sum_probs=99.7

Q ss_pred             hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC-------HHHH
Q 017383           83 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY-------IKAY  154 (372)
Q Consensus        83 ~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~-------~~a~  154 (372)
                      .+.+++++|+.+++.|+|++|+.+|+++|+++|+ +.+|.++|.||+.+|+|++|+.+|++++.++|++       +.+|
T Consensus         7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~   86 (127)
T 4gcn_A            7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM   86 (127)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence            4667889999999999999999999999999999 9999999999999999999999999999998876       4689


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHH
Q 017383          155 SRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAE  193 (372)
Q Consensus       155 ~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~  193 (372)
                      +++|.++..+|++++|+.+|++++.+.|+ ++....+.+
T Consensus        87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~  124 (127)
T 4gcn_A           87 SRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVKE  124 (127)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHHH
Confidence            99999999999999999999999999886 444444433

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.76  E-value=1.5e-17  Score=140.30  Aligned_cols=118  Identities=32%  Similarity=0.439  Sum_probs=108.5

Q ss_pred             chHHHHHHHHHHHHHhhcHHHHHHHHHHHHcc------------------CCC-HHHHHHHHHHHHHhcCHHHHHHHHHH
Q 017383           82 PDATSEKELGNECFKQKKFKEAIDCYSRSIAL------------------SPT-AVAYANRAMAYLKLRRFQEAEDDCTE  142 (372)
Q Consensus        82 ~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~------------------~p~-~~~~~~la~~~~~~g~~~eA~~~~~~  142 (372)
                      ..+..++.+|+.++..|+|++|+.+|.+++.+                  +|. ..+|+++|.||+.+|+|++|+.+|++
T Consensus         9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~   88 (162)
T 3rkv_A            9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE   88 (162)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            35667899999999999999999999999999                  666 78999999999999999999999999


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcH-HHHHHHHHHHHHHH
Q 017383          143 ALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ-EIKKQLAEVKSLYE  199 (372)
Q Consensus       143 Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~-~~~~~l~~a~~~~~  199 (372)
                      ++.++|+++.+|+++|.++..+|++++|+.+|++++.++|++. .+...+..+....+
T Consensus        89 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~  146 (162)
T 3rkv_A           89 VLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRA  146 (162)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998 66777777665544

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.75  E-value=1.1e-17  Score=138.35  Aligned_cols=129  Identities=14%  Similarity=0.071  Sum_probs=114.8

Q ss_pred             HHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 017383           69 SHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD  147 (372)
Q Consensus        69 ~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~  147 (372)
                      ..|.+++..+|.  ....++.+|..++..|+|++|+.+|++++.++|+ ..+|+++|.+|..+|++++|+.+|++++.++
T Consensus         5 ~~l~~al~~~p~--~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   82 (142)
T 2xcb_A            5 GTLAMLRGLSED--TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD   82 (142)
T ss_dssp             ----CCTTCCHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             hhHHHHHcCCHH--HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            467889999988  4455779999999999999999999999999998 9999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHH
Q 017383          148 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYE  199 (372)
Q Consensus       148 p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~~~  199 (372)
                      |+++.+++++|.++..+|++++|+.+|++++.++|+++........+...+.
T Consensus        83 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~  134 (142)
T 2xcb_A           83 INEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLE  134 (142)
T ss_dssp             TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998877666666655544

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.75  E-value=2.5e-17  Score=132.70  Aligned_cols=114  Identities=29%  Similarity=0.474  Sum_probs=108.1

Q ss_pred             hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 017383           83 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATAR  161 (372)
Q Consensus        83 ~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~  161 (372)
                      .+..++.+|..++..|+|++|+.+|++++.++|+ +.+|.++|.+|..+|++++|+.+|++++.++|+++.+|+++|.++
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   82 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ   82 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            4566889999999999999999999999999998 999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHccC------CCcHHHHHHHHHHHH
Q 017383          162 KELGKLKESIEDSEFALRLE------PQNQEIKKQLAEVKS  196 (372)
Q Consensus       162 ~~lg~~~~A~~~~~~al~l~------P~~~~~~~~l~~a~~  196 (372)
                      ..+|++++|+.+|++++.++      |++..++..+..+..
T Consensus        83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~  123 (126)
T 3upv_A           83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ  123 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence            99999999999999999999      999888887777654

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.75  E-value=1.3e-17  Score=148.17  Aligned_cols=127  Identities=18%  Similarity=0.181  Sum_probs=93.9

Q ss_pred             CCCCchhhHHHHHhhhhcCC-CCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEE-STPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE  137 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p-~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~  137 (372)
                      ..|++++|+..|++++..+| .+.  ..++.+|.+++..|+|++|+.+|++++.++|+ ..++.++|.+|..+|++++|+
T Consensus        19 ~~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~   96 (228)
T 4i17_A           19 NAKNYAVAFEKYSEYLKLTNNQDS--VTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYI   96 (228)
T ss_dssp             HTTCHHHHHHHHHHHHHHTTTCCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HccCHHHHHHHHHHHHhccCCCCc--HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHH
Confidence            56777777777777777776 433  33556777777777777777777777777777 777777777777777777777


Q ss_pred             HHHHHHHhcCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC--cHHHH
Q 017383          138 DDCTEALNLDDRYI-------KAYSRRATARKELGKLKESIEDSEFALRLEPQ--NQEIK  188 (372)
Q Consensus       138 ~~~~~Al~l~p~~~-------~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~--~~~~~  188 (372)
                      ..|++++.++|++.       .+|+.+|.++..+|++++|+..|++++.++|+  +..++
T Consensus        97 ~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  156 (228)
T 4i17_A           97 ATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDAL  156 (228)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHH
T ss_pred             HHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHH
Confidence            77777777777776       55777777777777777777777777777777  65554

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.74  E-value=9.3e-17  Score=142.54  Aligned_cols=124  Identities=18%  Similarity=0.268  Sum_probs=106.6

Q ss_pred             HHHHHHHHHHHHHhhcHHHHHHHHHHHHccCC-C-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 017383           84 ATSEKELGNECFKQKKFKEAIDCYSRSIALSP-T-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATAR  161 (372)
Q Consensus        84 a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p-~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~  161 (372)
                      +..++.+|.+++..|+|++|+.+|++++.++| . ..+++++|.++..+|++++|+.+|++++.++|++..+++.+|.++
T Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~   86 (228)
T 4i17_A            7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAY   86 (228)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence            35577899999999999999999999999997 5 888888999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHccCCCcHH-------HH----------HHHHHHHHHHHHHHHhhhh
Q 017383          162 KELGKLKESIEDSEFALRLEPQNQE-------IK----------KQLAEVKSLYEKEVFQKAS  207 (372)
Q Consensus       162 ~~lg~~~~A~~~~~~al~l~P~~~~-------~~----------~~l~~a~~~~~~~~~~~~~  207 (372)
                      ..+|++++|+..|++++.++|++..       ++          +.+.+|...|++++...+.
T Consensus        87 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~  149 (228)
T 4i17_A           87 RDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSK  149 (228)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCH
T ss_pred             HHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCC
Confidence            9999999999999999999998873       22          4566777778877777665

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.73  E-value=8.7e-18  Score=162.56  Aligned_cols=172  Identities=9%  Similarity=0.046  Sum_probs=143.3

Q ss_pred             HHHhhHHHHHHHHHHHHHHhhhcCCCCCccccccccccCCCCCCCC-CCCC-chhhHHHHHhhhhcCCCCchHHHHHHHH
Q 017383           14 GFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSR-NYDPVSHISSSLMNEESTPDATSEKELG   91 (372)
Q Consensus        14 ~~~~~l~~~e~~ik~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~-~~~A~~~~~~al~~~p~~~~a~~~~~~g   91 (372)
                      ..+...+++++++...++.+...+....-.         ...|..| .+|+ +++|+.+|++++.++|++..+  |+.+|
T Consensus       105 ~~~~~~g~~~~Al~~~~~al~l~P~~~~a~---------~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a--~~~~g  173 (382)
T 2h6f_A          105 AVLQRDERSERAFKLTRDAIELNAANYTVW---------HFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV--WHHRR  173 (382)
T ss_dssp             HHHHHTCCCHHHHHHHHHHHHHCTTCHHHH---------HHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH--HHHHH
T ss_pred             HHHHHCCChHHHHHHHHHHHHhCccCHHHH---------HHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHH--HHHHH
Confidence            334445668888888888876665211111         1112223 6785 999999999999999995555  77999


Q ss_pred             HHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cCCHHH
Q 017383           92 NECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKE-LGKLKE  169 (372)
Q Consensus        92 ~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~-lg~~~~  169 (372)
                      .++...|+|++|+.+|+++|+++|+ ..+|+++|.++..+|++++|+.+|+++|.++|++..+|+++|.++.. .|.+++
T Consensus       174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~e  253 (382)
T 2h6f_A          174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDR  253 (382)
T ss_dssp             HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred             HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchH
Confidence            9999999999999999999999998 99999999999999999999999999999999999999999999999 555588


Q ss_pred             H-----HHHHHHHHccCCCcHHHHHHHHHHHH
Q 017383          170 S-----IEDSEFALRLEPQNQEIKKQLAEVKS  196 (372)
Q Consensus       170 A-----~~~~~~al~l~P~~~~~~~~l~~a~~  196 (372)
                      |     +.+|++++.++|++..++..+..+..
T Consensus       254 A~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~  285 (382)
T 2h6f_A          254 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQ  285 (382)
T ss_dssp             HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            8     59999999999999998877765543

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.73  E-value=8.6e-17  Score=141.77  Aligned_cols=147  Identities=12%  Similarity=0.020  Sum_probs=117.7

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHH----------------HHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKE----------------LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYAN  122 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~----------------~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~  122 (372)
                      ..|++++|+..|++++..+|+++.+  ++.                +|.+|...|+|++|+.+|+++++++|+ ..++++
T Consensus        16 ~~g~~~~A~~~~~~al~~~p~~~~~--~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   93 (208)
T 3urz_A           16 EAGQNGQAVSYFRQTIALNIDRTEM--YYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEA   93 (208)
T ss_dssp             HTTCHHHHHHHHHHHHHHCHHHHHH--HHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhCCCChHH--HHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence            6799999999999999999985555  556                999999999999999999999999998 999999


Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHccCCCcHHH---------HHHH
Q 017383          123 RAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGK--LKESIEDSEFALRLEPQNQEI---------KKQL  191 (372)
Q Consensus       123 la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~--~~~A~~~~~~al~l~P~~~~~---------~~~l  191 (372)
                      +|.+|..+|++++|+.+|+++++++|+++.+|+++|.+|...|+  ...+...|.+++...|.....         .+.+
T Consensus        94 lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~  173 (208)
T 3urz_A           94 CAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRY  173 (208)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCH
Confidence            99999999999999999999999999999999999998876654  345566666665443322111         1345


Q ss_pred             HHHHHHHHHHHHhhhhh
Q 017383          192 AEVKSLYEKEVFQKASK  208 (372)
Q Consensus       192 ~~a~~~~~~~~~~~~~~  208 (372)
                      .+|...|++++...|..
T Consensus       174 ~~A~~~~~~al~l~P~~  190 (208)
T 3urz_A          174 EKARNSLQKVILRFPST  190 (208)
T ss_dssp             HHHHHHHHHHTTTSCCH
T ss_pred             HHHHHHHHHHHHhCCCH
Confidence            66666666666666543

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.72  E-value=7.8e-18  Score=175.23  Aligned_cols=163  Identities=17%  Similarity=0.183  Sum_probs=142.8

Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHhhhcCCCCCccccccccccCCCCCCCC-CCCCchhhHHHHHhhhhcCCCCchHHHHHH
Q 017383           11 DFQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKE   89 (372)
Q Consensus        11 ~l~~~~~~l~~~e~~ik~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~~A~~~~~~al~~~p~~~~a~~~~~   89 (372)
                      .|...+..+++++++++...+.+...+...         .+...+|..| .+|++++|+..|+++++++|++..+  +++
T Consensus        14 nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~---------~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a--~~n   82 (723)
T 4gyw_A           14 NLANIKREQGNIEEAVRLYRKALEVFPEFA---------AAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADA--YSN   82 (723)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCSCCH---------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH--HHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH--HHH
Confidence            456677788899999999888887665111         0112334445 7899999999999999999995555  779


Q ss_pred             HHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 017383           90 LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLK  168 (372)
Q Consensus        90 ~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~  168 (372)
                      +|.+|..+|++++|+.+|+++++++|+ +.+|+++|.+|..+|++++|+.+|++|++++|+++.+++++|.++..+|+++
T Consensus        83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~  162 (723)
T 4gyw_A           83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT  162 (723)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence            999999999999999999999999999 9999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHccCCCc
Q 017383          169 ESIEDSEFALRLEPQN  184 (372)
Q Consensus       169 ~A~~~~~~al~l~P~~  184 (372)
                      +|...|++++.+.|+.
T Consensus       163 ~A~~~~~kal~l~~~~  178 (723)
T 4gyw_A          163 DYDERMKKLVSIVADQ  178 (723)
T ss_dssp             THHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhChhH
Confidence            9999999999987654

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.71  E-value=2.8e-17  Score=156.04  Aligned_cols=139  Identities=27%  Similarity=0.317  Sum_probs=128.0

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-H---------------HHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-A---------------VAYANR  123 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~---------------~~~~~l  123 (372)
                      .++++++|+..|.+++..+|.  .+..++.+|++|+..|+|++|+.+|++++.++|. .               .+|.++
T Consensus       125 ~L~~~~~A~~~~~~a~~~~p~--~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nl  202 (336)
T 1p5q_A          125 HLKSFEKAKESWEMNSEEKLE--QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNL  202 (336)
T ss_dssp             EEEEEECCCCGGGCCHHHHHH--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred             EEeecccccchhcCCHHHHHH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHH
Confidence            567888999999999988877  5666889999999999999999999999999987 3               899999


Q ss_pred             HHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHH
Q 017383          124 AMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEK  200 (372)
Q Consensus       124 a~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~~~~  200 (372)
                      |.||+.+|+|++|+.+|++|+.++|+++.+|+++|.++..+|++++|+.+|++++.++|++..++..+..+....++
T Consensus       203 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~  279 (336)
T 1p5q_A          203 AMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRR  279 (336)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999998888777665544

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.71  E-value=2.2e-16  Score=133.35  Aligned_cols=107  Identities=28%  Similarity=0.440  Sum_probs=102.5

Q ss_pred             chHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 017383           82 PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATA  160 (372)
Q Consensus        82 ~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~  160 (372)
                      ..+..++.+|.+++..|+|++|+.+|++++.++|+ ..+|+++|.+|+.+|+|++|+.+|++++.++|++..+|+++|.+
T Consensus         9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~   88 (164)
T 3sz7_A            9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA   88 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            35677889999999999999999999999999998 99999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHccCCCcHHHH
Q 017383          161 RKELGKLKESIEDSEFALRLEPQNQEIK  188 (372)
Q Consensus       161 ~~~lg~~~~A~~~~~~al~l~P~~~~~~  188 (372)
                      +..+|++++|+.+|++++.++|++..++
T Consensus        89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~  116 (164)
T 3sz7_A           89 RFDMADYKGAKEAYEKGIEAEGNGGSDA  116 (164)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHSSSCCHH
T ss_pred             HHHccCHHHHHHHHHHHHHhCCCchHHH
Confidence            9999999999999999999999997744

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.70  E-value=4.9e-17  Score=161.58  Aligned_cols=137  Identities=16%  Similarity=0.116  Sum_probs=86.7

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHh---------hcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQ---------KKFKEAIDCYSRSIALSPT-AVAYANRAMAYLK  129 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~---------g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~  129 (372)
                      ..|++++|+.+|++++.++|+   ..++..+|.++...         |+|++|+.+|+++++++|+ ..+|+++|.+|..
T Consensus       149 ~~g~~~~A~~~~~~al~~~p~---~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~  225 (474)
T 4abn_A          149 KKGDVTSAHTCFSGALTHCKN---KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLS  225 (474)
T ss_dssp             HHTCHHHHHHHHHHHHTTCCC---HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhhCCC---HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            456666666666666666655   23455666666666         6666666666666666666 6666666666666


Q ss_pred             h--------cCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHH
Q 017383          130 L--------RRFQEAEDDCTEALNLDD---RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLY  198 (372)
Q Consensus       130 ~--------g~~~eA~~~~~~Al~l~p---~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~~  198 (372)
                      +        |++++|+.+|++|+.++|   +++.+|+++|.++..+|++++|+.+|++++.++|++..++..+..+...+
T Consensus       226 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~l  305 (474)
T 4abn_A          226 LYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFL  305 (474)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            6        666666666666666666   66666666666666666666666666666666666666655555554443


Q ss_pred             H
Q 017383          199 E  199 (372)
Q Consensus       199 ~  199 (372)
                      +
T Consensus       306 g  306 (474)
T 4abn_A          306 S  306 (474)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.70  E-value=3.6e-16  Score=133.27  Aligned_cols=128  Identities=16%  Similarity=0.173  Sum_probs=115.9

Q ss_pred             CCCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHH-HHHhcCH--H
Q 017383           59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMA-YLKLRRF--Q  134 (372)
Q Consensus        59 y~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~-~~~~g~~--~  134 (372)
                      +..|++++|+..|.+++..+|.+..  .+..+|.+|+..|+|++|+.+|++++.++|+ ..++.++|.+ +...|++  +
T Consensus        21 ~~~~~~~~A~~~~~~al~~~p~~~~--~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~   98 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRANPQNSE--QWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA   98 (177)
T ss_dssp             C-----CCCCHHHHHHHHHCCSCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred             hhccCHHHHHHHHHHHHHhCCCcHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence            4789999999999999999998554  4779999999999999999999999999998 9999999999 8899999  9


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHH
Q 017383          135 EAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK  188 (372)
Q Consensus       135 eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~  188 (372)
                      +|+..|++++.++|++..+++.+|.++..+|++++|+..|++++.++|++....
T Consensus        99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  152 (177)
T 2e2e_A           99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT  152 (177)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence            999999999999999999999999999999999999999999999999886544

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.69  E-value=1.8e-16  Score=138.10  Aligned_cols=139  Identities=24%  Similarity=0.247  Sum_probs=121.6

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-H----------------HHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-A----------------VAYAN  122 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~----------------~~~~~  122 (372)
                      ..|+++.|.+.+.......+.  .+..++.+|..++..|+|++|+.+|.+++.+.|. .                .++.+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (198)
T 2fbn_A           16 NLYFQGAKKSIYDYTDEEKVQ--SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLN   93 (198)
T ss_dssp             ------CCCSGGGCCHHHHHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhccccCchhhCCHHHHHH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence            568888888888877665544  5666889999999999999999999999999887 5                89999


Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHH
Q 017383          123 RAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEK  200 (372)
Q Consensus       123 la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~~~~  200 (372)
                      +|.||+.+|+|++|+.+|++++.++|.+..+++++|.++..+|++++|+.+|++++.++|++..++..+..+...+++
T Consensus        94 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  171 (198)
T 2fbn_A           94 LATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKE  171 (198)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999888888776654

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.69  E-value=1.6e-16  Score=150.64  Aligned_cols=131  Identities=17%  Similarity=0.189  Sum_probs=119.6

Q ss_pred             CCCCCC-CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhc
Q 017383           54 PSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR  131 (372)
Q Consensus        54 ~~~~~y-~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g  131 (372)
                      .+|..| ..|++++|+..|++++..+|....+..+..+|.+|...|++++|+.+|+++++++|+ ..+|.++|.+|..+|
T Consensus       182 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g  261 (365)
T 4eqf_A          182 RMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGD  261 (365)
T ss_dssp             -------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            345555 789999999999999999998555566889999999999999999999999999998 999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCc
Q 017383          132 RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN  184 (372)
Q Consensus       132 ~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~  184 (372)
                      ++++|+..|++++.++|+++.+++++|.++..+|++++|+..|++++.+.|++
T Consensus       262 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  314 (365)
T 4eqf_A          262 RSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKS  314 (365)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC
T ss_pred             CHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            99999999999999999999999999999999999999999999999999874

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.68  E-value=5.7e-17  Score=160.40  Aligned_cols=139  Identities=25%  Similarity=0.333  Sum_probs=124.2

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC----------------HHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----------------AVAYANR  123 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~----------------~~~~~~l  123 (372)
                      .++++++|+..|..++...|.  .+..++.+|+.++..|+|++|+.+|++++.++|.                ..+|+++
T Consensus       246 ~l~~~~~A~~~~~~~~~~~~~--~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nl  323 (457)
T 1kt0_A          246 TLKSFEKAKESWEMDTKEKLE--QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNL  323 (457)
T ss_dssp             EEEEEECCCCGGGSCHHHHHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhcccCcchhhcCHHHHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHH
Confidence            557888899999999888876  5666889999999999999999999999999886                3889999


Q ss_pred             HHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHH
Q 017383          124 AMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEK  200 (372)
Q Consensus       124 a~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~~~~  200 (372)
                      |.||+++|+|++|+.+|++|+.++|++..+|+++|.+|..+|++++|+.+|++++.++|++..++..+..+...+++
T Consensus       324 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~  400 (457)
T 1kt0_A          324 AMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKE  400 (457)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999998888888776654

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.68  E-value=2.7e-16  Score=156.25  Aligned_cols=148  Identities=14%  Similarity=0.168  Sum_probs=136.0

Q ss_pred             CCCCc-hhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHh--------
Q 017383           60 SYSRN-YDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKL--------  130 (372)
Q Consensus        60 ~~g~~-~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~~la~~~~~~--------  130 (372)
                      ..|++ ++|+.+|+++++.+|.+..+  ++.+|.+|+..|+|++|+.+|+++++++|+..++.++|.+|..+        
T Consensus       114 ~~g~~~~~A~~~~~~al~~~p~~~~a--~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~  191 (474)
T 4abn_A          114 VTPDYSPEAEVLLSKAVKLEPELVEA--WNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEH  191 (474)
T ss_dssp             SSSSCCHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHH
T ss_pred             hccccHHHHHHHHHHHHhhCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhccCChhhh
Confidence            78999 99999999999999995554  77999999999999999999999999999999999999999999        


Q ss_pred             -cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHccCC---CcHHHH----------
Q 017383          131 -RRFQEAEDDCTEALNLDDRYIKAYSRRATARKEL--------GKLKESIEDSEFALRLEP---QNQEIK----------  188 (372)
Q Consensus       131 -g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~l--------g~~~~A~~~~~~al~l~P---~~~~~~----------  188 (372)
                       |++++|+..|++++.++|++..+|+++|.++..+        |++++|+.+|++++.++|   ++..++          
T Consensus       192 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~  271 (474)
T 4abn_A          192 SRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYE  271 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHT
T ss_pred             hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHc
Confidence             9999999999999999999999999999999999        999999999999999999   888775          


Q ss_pred             HHHHHHHHHHHHHHHhhhhhH
Q 017383          189 KQLAEVKSLYEKEVFQKASKT  209 (372)
Q Consensus       189 ~~l~~a~~~~~~~~~~~~~~~  209 (372)
                      +.+.+|...|++++...+...
T Consensus       272 g~~~~A~~~~~~al~l~p~~~  292 (474)
T 4abn_A          272 ESYGEALEGFSQAAALDPAWP  292 (474)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCH
T ss_pred             CCHHHHHHHHHHHHHhCCCCH
Confidence            556777788888877766544

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.68  E-value=3.5e-16  Score=149.69  Aligned_cols=166  Identities=24%  Similarity=0.262  Sum_probs=94.4

Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHhhhcCCCCCccccccccccCCCCCCCC-CCCCchhhHHHHHhhhhcCCCCchHHHHHH
Q 017383           11 DFQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKE   89 (372)
Q Consensus        11 ~l~~~~~~l~~~e~~ik~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~~A~~~~~~al~~~p~~~~a~~~~~   89 (372)
                      .+...+..+.+|+++++...+.+...+....         ....+|..| ..|++++|+..|++++..+|....+  +..
T Consensus       140 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~--~~~  208 (388)
T 1w3b_A          140 DLGNLLKALGRLEEAKACYLKAIETQPNFAV---------AWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDA--YIN  208 (388)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHH--HHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH--HHH
Confidence            3455556666777777666665544431100         001112222 4566666666666666666653333  445


Q ss_pred             HHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 017383           90 LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLK  168 (372)
Q Consensus        90 ~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~  168 (372)
                      +|.++...|++++|+.+|.+++.++|+ ..++.++|.+|...|++++|+..|++++.++|+++.+++.+|.++...|+++
T Consensus       209 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~  288 (388)
T 1w3b_A          209 LGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVA  288 (388)
T ss_dssp             HHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Confidence            666666666666666666666666665 5556666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHccCCCcHHH
Q 017383          169 ESIEDSEFALRLEPQNQEI  187 (372)
Q Consensus       169 ~A~~~~~~al~l~P~~~~~  187 (372)
                      +|+..|++++.+.|++..+
T Consensus       289 ~A~~~~~~al~~~p~~~~~  307 (388)
T 1w3b_A          289 EAEDCYNTALRLCPTHADS  307 (388)
T ss_dssp             HHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHhhCcccHHH
Confidence            6666666666666655554

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.68  E-value=2.6e-16  Score=150.67  Aligned_cols=186  Identities=16%  Similarity=0.127  Sum_probs=154.2

Q ss_pred             HHHHHhhHHHHHHHHHHHHHHhhhcCCCCCccccccccccCCCCCCCC-CCCCchhhHHHHHhhhhcCCCCchHHHHHHH
Q 017383           12 FQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKEL   90 (372)
Q Consensus        12 l~~~~~~l~~~e~~ik~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~   90 (372)
                      +...+...++|+++++.....+...+.... .        ...+|..| ..|++++|+..|.+++..+|....  ++..+
T Consensus       107 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~-~--------~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~l  175 (388)
T 1w3b_A          107 LAAALVAAGDMEGAVQAYVSALQYNPDLYC-V--------RSDLGNLLKALGRLEEAKACYLKAIETQPNFAV--AWSNL  175 (388)
T ss_dssp             HHHHHHHHSCSSHHHHHHHHHHHHCTTCTH-H--------HHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHH--HHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-H--------HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH--HHHHH
Confidence            444555667778888877777655541110 0        01223334 679999999999999999998544  47799


Q ss_pred             HHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 017383           91 GNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKE  169 (372)
Q Consensus        91 g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~  169 (372)
                      |.++...|++++|+.+|++++.++|+ ..++.++|.++...|++++|+..|.+++.++|++..+++++|.++...|++++
T Consensus       176 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~  255 (388)
T 1w3b_A          176 GCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDL  255 (388)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHH
Confidence            99999999999999999999999999 99999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHccCCCcHHHH----------HHHHHHHHHHHHHHHhhhhh
Q 017383          170 SIEDSEFALRLEPQNQEIK----------KQLAEVKSLYEKEVFQKASK  208 (372)
Q Consensus       170 A~~~~~~al~l~P~~~~~~----------~~l~~a~~~~~~~~~~~~~~  208 (372)
                      |+..|++++.++|+++.++          +.+.+|...|++++...+..
T Consensus       256 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  304 (388)
T 1w3b_A          256 AIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH  304 (388)
T ss_dssp             HHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc
Confidence            9999999999999998775          44566777777777766544

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.67  E-value=8.7e-16  Score=139.36  Aligned_cols=126  Identities=13%  Similarity=0.072  Sum_probs=116.0

Q ss_pred             CCCCCchhhHHHHHhhhhcCCCCch-HHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC----HHHHHHHHHHHHH----
Q 017383           59 NSYSRNYDPVSHISSSLMNEESTPD-ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLK----  129 (372)
Q Consensus        59 y~~g~~~~A~~~~~~al~~~p~~~~-a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~~la~~~~~----  129 (372)
                      +..|++++|+..|++++...|.++. ..+++.+|.+|+..|+|++|+.+|++++.++|+    ..+++++|.+++.    
T Consensus        26 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~  105 (261)
T 3qky_A           26 YNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPP  105 (261)
T ss_dssp             HHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCC
T ss_pred             HHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhccc
Confidence            3779999999999999999998633 455889999999999999999999999999885    7889999999999    


Q ss_pred             ----hcCHHHHHHHHHHHHhcCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHccCCCc
Q 017383          130 ----LRRFQEAEDDCTEALNLDDRYIKAY-----------------SRRATARKELGKLKESIEDSEFALRLEPQN  184 (372)
Q Consensus       130 ----~g~~~eA~~~~~~Al~l~p~~~~a~-----------------~~lg~~~~~lg~~~~A~~~~~~al~l~P~~  184 (372)
                          +|++++|+..|++++.++|++..+.                 +.+|.+|..+|++++|+..|++++...|++
T Consensus       106 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~  181 (261)
T 3qky_A          106 YELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDT  181 (261)
T ss_dssp             TTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred             ccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC
Confidence                9999999999999999999986555                 889999999999999999999999999984

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.67  E-value=2.7e-16  Score=127.74  Aligned_cols=101  Identities=15%  Similarity=0.165  Sum_probs=95.3

Q ss_pred             CCCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 017383           59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE  137 (372)
Q Consensus        59 y~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~  137 (372)
                      |..|+|++|+..|+++++++|.+..+  +.++|.+|+..|++++|+.+|+++++++|+ ..+|+++|.+|..+|++++|+
T Consensus        24 ~~~g~~~~A~~~~~~al~~~p~~~~~--~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~  101 (126)
T 4gco_A           24 FKKGDYPTAMRHYNEAVKRDPENAIL--YSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQ  101 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHH--HHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHH
Confidence            47899999999999999999995554  779999999999999999999999999999 999999999999999999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHH
Q 017383          138 DDCTEALNLDDRYIKAYSRRATAR  161 (372)
Q Consensus       138 ~~~~~Al~l~p~~~~a~~~lg~~~  161 (372)
                      .+|+++++++|++..++..++.++
T Consensus       102 ~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A          102 RAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             HHHHHHHHHCcCCHHHHHHHHHhc
Confidence            999999999999999999998764

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.67  E-value=1.1e-15  Score=136.57  Aligned_cols=173  Identities=17%  Similarity=0.212  Sum_probs=140.7

Q ss_pred             HHHHHhhHHHHHHHHHHHHHHhhhcCCCCCccccccccccCCCCCCCC-CCCCchhhHHHHHhhhhcCCCCc--h---HH
Q 017383           12 FQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTP--D---AT   85 (372)
Q Consensus        12 l~~~~~~l~~~e~~ik~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~~A~~~~~~al~~~p~~~--~---a~   85 (372)
                      +...+-...+|++++....+.+... ....         ....+|..| ..|++++|+..|.+++..+|...  .   +.
T Consensus        11 ~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~---------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~   80 (258)
T 3uq3_A           11 EGNKFYKARQFDEAIEHYNKAWELH-KDIT---------YLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK   80 (258)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHS-CCTH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHhh-ccHH---------HHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence            4455556678888888777766443 1110         001122333 78999999999999999887641  1   56


Q ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHHHc--------------------------cCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383           86 SEKELGNECFKQKKFKEAIDCYSRSIA--------------------------LSPT-AVAYANRAMAYLKLRRFQEAED  138 (372)
Q Consensus        86 ~~~~~g~~~~~~g~~~~Ai~~y~~al~--------------------------~~p~-~~~~~~la~~~~~~g~~~eA~~  138 (372)
                      .+..+|.++...|++++|+.+|++++.                          .+|. ..++.++|.++...|++++|+.
T Consensus        81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~  160 (258)
T 3uq3_A           81 SFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVK  160 (258)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHH
Confidence            688999999999999999999999999                          5565 7889999999999999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHH
Q 017383          139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV  194 (372)
Q Consensus       139 ~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a  194 (372)
                      .|++++.++|.+..+++.+|.++..+|++++|+..|++++.++|++..++..++.+
T Consensus       161 ~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~  216 (258)
T 3uq3_A          161 AYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA  216 (258)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998876444443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.67  E-value=5.2e-16  Score=138.62  Aligned_cols=132  Identities=25%  Similarity=0.402  Sum_probs=116.6

Q ss_pred             CCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHH
Q 017383           61 YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDD  139 (372)
Q Consensus        61 ~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~  139 (372)
                      .|++++|+..+.+++..+|.  ....+..+|.+++..|+|++|+.+|++++..+|. ..++.++|.++..+|++++|+.+
T Consensus       118 ~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  195 (258)
T 3uq3_A          118 LRNAEKELKKAEAEAYVNPE--KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIAD  195 (258)
T ss_dssp             HHHHHHHHHHHHHHHHCCHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHcCcc--hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHH
Confidence            34455555555555557766  4556789999999999999999999999999998 99999999999999999999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC------CCcHHHHHHHHHH
Q 017383          140 CTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLE------PQNQEIKKQLAEV  194 (372)
Q Consensus       140 ~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~------P~~~~~~~~l~~a  194 (372)
                      |++++.++|+++.+++.+|.++..+|++++|+..|++++.++      |++..++..+.++
T Consensus       196 ~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~  256 (258)
T 3uq3_A          196 CNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA  256 (258)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred             HHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999      9988887776654

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.67  E-value=3.1e-15  Score=126.38  Aligned_cols=134  Identities=16%  Similarity=0.216  Sum_probs=123.7

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~  138 (372)
                      ..|++++|+..|++++..+|..  ...+..+|.+++..|++++|+.+|++++..+|. ..++.++|.++...|++++|+.
T Consensus        20 ~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~   97 (186)
T 3as5_A           20 KAGRYSQAVMLLEQVYDADAFD--VDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVP   97 (186)
T ss_dssp             HHTCHHHHHHHHTTTCCTTSCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhCccC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHH
Confidence            5689999999999999999885  455779999999999999999999999999998 9999999999999999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHH
Q 017383          139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVK  195 (372)
Q Consensus       139 ~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~  195 (372)
                      .+++++..+|.+..+++.+|.++...|++++|+..|++++...|.+..++..+..+.
T Consensus        98 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  154 (186)
T 3as5_A           98 LLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSY  154 (186)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999987765554443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.66  E-value=1.9e-15  Score=136.81  Aligned_cols=132  Identities=10%  Similarity=0.066  Sum_probs=121.5

Q ss_pred             CCCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC----HHHHHHHHHHHHHhcCHH
Q 017383           59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQ  134 (372)
Q Consensus        59 y~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~~la~~~~~~g~~~  134 (372)
                      +..|++++|+..|++++..+|.+..+  +..+|.+++..|+|++|+.+|++++...++    ..+|.++|.++..+|+++
T Consensus        14 ~~~~~~~~A~~~~~~~l~~~p~~~~~--~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~   91 (272)
T 3u4t_A           14 FKNNNYAEAIEVFNKLEAKKYNSPYI--YNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDS   91 (272)
T ss_dssp             HTTTCHHHHHHHHHHHHHTTCCCSTT--HHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHH
T ss_pred             HHhcCHHHHHHHHHHHHHhCCCcHHH--HHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHH
Confidence            37899999999999999999986665  669999999999999999999999994333    667999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHH
Q 017383          135 EAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLA  192 (372)
Q Consensus       135 eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~  192 (372)
                      +|+.+|++++.++|.+..++..+|.++..+|++++|+.+|++++.++|.+..++..++
T Consensus        92 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~  149 (272)
T 3u4t_A           92 LAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELG  149 (272)
T ss_dssp             HHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHH
T ss_pred             HHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999988876655

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.66  E-value=8.6e-16  Score=145.11  Aligned_cols=145  Identities=18%  Similarity=0.203  Sum_probs=131.5

Q ss_pred             CCCCCCCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCH
Q 017383           55 SPSGNSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRF  133 (372)
Q Consensus        55 ~~~~y~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~  133 (372)
                      +|..+..|++++|+..|.+++..+|....+..+..+|.++...|++++|+.+|++++.++|. ..++.++|.++..+|++
T Consensus       188 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~  267 (368)
T 1fch_A          188 LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQS  267 (368)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCH
Confidence            44445779999999999999999998555666889999999999999999999999999998 99999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCc-----------HHHHHHHHHHHHHHH
Q 017383          134 QEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN-----------QEIKKQLAEVKSLYE  199 (372)
Q Consensus       134 ~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~-----------~~~~~~l~~a~~~~~  199 (372)
                      ++|+..|++++.++|++..+++.+|.++..+|++++|+..|++++.+.|++           ..++..+..+....+
T Consensus       268 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  344 (368)
T 1fch_A          268 EEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLG  344 (368)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhC
Confidence            999999999999999999999999999999999999999999999999988           677777766655443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.65  E-value=8.4e-16  Score=145.67  Aligned_cols=164  Identities=12%  Similarity=0.067  Sum_probs=95.2

Q ss_pred             HHHhhHHHHHHHHHHHHHHhhhcCCCCCccccccccccCCCCCCCC-CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHH
Q 017383           14 GFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGN   92 (372)
Q Consensus        14 ~~~~~l~~~e~~ik~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~   92 (372)
                      ..+-...+|++++......+...+....         ....+|..| ..|++++|+..|++++..+|.+..+  +..+|.
T Consensus        73 ~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~--~~~l~~  141 (365)
T 4eqf_A           73 LKRLKEGDLPVTILFMEAAILQDPGDAE---------AWQFLGITQAENENEQAAIVALQRCLELQPNNLKA--LMALAV  141 (365)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH--HHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCcCCHH---------HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHH--HHHHHH
Confidence            3344456677777766666654431110         001122233 6678888888888888887774433  567777


Q ss_pred             HHHHhhcHHHHHHHHHHHHccCCC-----------------------------------------------HHHHHHHHH
Q 017383           93 ECFKQKKFKEAIDCYSRSIALSPT-----------------------------------------------AVAYANRAM  125 (372)
Q Consensus        93 ~~~~~g~~~~Ai~~y~~al~~~p~-----------------------------------------------~~~~~~la~  125 (372)
                      +|...|++++|+.+|++++.++|+                                               +.++.++|.
T Consensus       142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~  221 (365)
T 4eqf_A          142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV  221 (365)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred             HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence            777777777777777777766554                                               334455555


Q ss_pred             HHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHH
Q 017383          126 AYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK  188 (372)
Q Consensus       126 ~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~  188 (372)
                      +|..+|++++|+..|++++.++|+++.+|+.+|.++..+|++++|+..|++++.++|++..++
T Consensus       222 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  284 (365)
T 4eqf_A          222 LFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSR  284 (365)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHH
Confidence            555555555555555555555555555555555555555555555555555555555554443

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.65  E-value=3e-15  Score=121.46  Aligned_cols=114  Identities=35%  Similarity=0.522  Sum_probs=105.2

Q ss_pred             hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 017383           83 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATAR  161 (372)
Q Consensus        83 ~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~  161 (372)
                      .+..++.+|.+++..|+|++|+.+|.+++.++|. ..+++++|.++..+|++++|+.+|++++.++|+++.+++++|.++
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~   87 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   87 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence            4566889999999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHccCCC-----cHHHHHHHHHHHH
Q 017383          162 KELGKLKESIEDSEFALRLEPQ-----NQEIKKQLAEVKS  196 (372)
Q Consensus       162 ~~lg~~~~A~~~~~~al~l~P~-----~~~~~~~l~~a~~  196 (372)
                      ..+|++++|+..|++++.++|+     +..+...+..+..
T Consensus        88 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~  127 (137)
T 3q49_B           88 LEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK  127 (137)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998     5666655555543

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.65  E-value=1e-15  Score=123.30  Aligned_cols=100  Identities=16%  Similarity=0.090  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 017383           87 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG  165 (372)
Q Consensus        87 ~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg  165 (372)
                      ++.+|..++..|++++|+.+|++++.++|+ +.+|+++|.++..+|++++|+..|++++.++|++..+++.+|.++..+|
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g   99 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH   99 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            568999999999999999999999999998 9999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHccCCCcHH
Q 017383          166 KLKESIEDSEFALRLEPQNQE  186 (372)
Q Consensus       166 ~~~~A~~~~~~al~l~P~~~~  186 (372)
                      ++++|+..|++++.++|++..
T Consensus       100 ~~~~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A          100 NANAALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             HHHHHHHHHHHHHC-------
T ss_pred             CHHHHHHHHHHHHHhCcCCCC
Confidence            999999999999999998754

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.65  E-value=2.7e-15  Score=133.06  Aligned_cols=139  Identities=14%  Similarity=0.179  Sum_probs=116.2

Q ss_pred             CCCCCC-CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhc
Q 017383           54 PSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR  131 (372)
Q Consensus        54 ~~~~~y-~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g  131 (372)
                      ..|..| ..|++++|+..|++++..+|...  ..+..+|.+++..|++++|+.+|++++..+|. ..++..+|.++..+|
T Consensus        28 ~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~  105 (243)
T 2q7f_A           28 QQMGRGSEFGDYEKAAEAFTKAIEENKEDA--IPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKE  105 (243)
T ss_dssp             --------------CCTTHHHHHTTCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhhCHHHHHHHHHHHHHhCcccH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhc
Confidence            344444 78999999999999999999854  44779999999999999999999999999998 999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHH
Q 017383          132 RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV  194 (372)
Q Consensus       132 ~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a  194 (372)
                      ++++|+..+++++.++|.+..+++.+|.++...|++++|+..|++++.+.|++..++..+..+
T Consensus       106 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  168 (243)
T 2q7f_A          106 MYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMC  168 (243)
T ss_dssp             CHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999988876554443

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.65  E-value=5.6e-15  Score=138.05  Aligned_cols=141  Identities=19%  Similarity=0.253  Sum_probs=128.8

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHH----------HHHHHHHHHhhcHHHHHHHHHHHHccCCC-H----HHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSE----------KELGNECFKQKKFKEAIDCYSRSIALSPT-A----VAYANRA  124 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~----------~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~----~~~~~la  124 (372)
                      ..|++++|+..|.+++..+|....+..+          ..+|.+++..|++++|+.+|++++..+|+ .    .++..+|
T Consensus       200 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la  279 (359)
T 3ieg_A          200 QLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERIC  279 (359)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence            6799999999999999999987765432          25599999999999999999999999998 3    5577899


Q ss_pred             HHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHH
Q 017383          125 MAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEK  200 (372)
Q Consensus       125 ~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~~~~  200 (372)
                      .++..+|++++|+..|++++.++|+++.+++.+|.++..+|++++|+.+|+++++++|++..++..+..+...+++
T Consensus       280 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~  355 (359)
T 3ieg_A          280 HCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ  355 (359)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999888777654

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.64  E-value=4.5e-15  Score=134.13  Aligned_cols=129  Identities=17%  Similarity=0.082  Sum_probs=120.1

Q ss_pred             CCCCchhhHHHHHhhhhcCCCC--chHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEEST--PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEA  136 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~--~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA  136 (372)
                      ..|++++|+..|.+++...+..  ..+..+..+|.+++..|++++|+.+|++++.++|. ..++.++|.+|..+|++++|
T Consensus        17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A   96 (275)
T 1xnf_A           17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA   96 (275)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHH
Confidence            6689999999999999985432  25667889999999999999999999999999998 99999999999999999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHH
Q 017383          137 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK  188 (372)
Q Consensus       137 ~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~  188 (372)
                      +.+|++++.++|.+..+++.+|.++..+|++++|+..|++++.++|++....
T Consensus        97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  148 (275)
T 1xnf_A           97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRS  148 (275)
T ss_dssp             HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHH
Confidence            9999999999999999999999999999999999999999999999997554

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.64  E-value=1.4e-15  Score=138.06  Aligned_cols=166  Identities=13%  Similarity=0.076  Sum_probs=136.5

Q ss_pred             hhHHHHHHHHHHHHHHhhhcCCCCCccccccccccCCCCCCCC-CCCCchhhHHHHHhhhhcCCCCch-HHHHHHHHHHH
Q 017383           17 NDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPD-ATSEKELGNEC   94 (372)
Q Consensus        17 ~~l~~~e~~ik~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~~A~~~~~~al~~~p~~~~-a~~~~~~g~~~   94 (372)
                      -..++|++++......+...+.....      ..+...+|..| ..|++++|+..|++++...|.++. ..+++.+|.++
T Consensus        26 ~~~g~~~~A~~~~~~~l~~~p~~~~~------~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~   99 (261)
T 3qky_A           26 YNQGKYDRAIEYFKAVFTYGRTHEWA------ADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCY   99 (261)
T ss_dssp             HHTTCHHHHHHHHHHHGGGCSCSTTH------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHhCCCCcch------HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHH
Confidence            34578888888888887665522100      00111223334 789999999999999999986643 56688999999


Q ss_pred             HH--------hhcHHHHHHHHHHHHccCCC----HHHH--------------HHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 017383           95 FK--------QKKFKEAIDCYSRSIALSPT----AVAY--------------ANRAMAYLKLRRFQEAEDDCTEALNLDD  148 (372)
Q Consensus        95 ~~--------~g~~~~Ai~~y~~al~~~p~----~~~~--------------~~la~~~~~~g~~~eA~~~~~~Al~l~p  148 (372)
                      +.        .|++++|+.+|++++..+|+    ..++              +++|.+|..+|+|++|+..|++++..+|
T Consensus       100 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p  179 (261)
T 3qky_A          100 YKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYP  179 (261)
T ss_dssp             HHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence            99        99999999999999999997    3333              8899999999999999999999999999


Q ss_pred             C---CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHccCCCcHHHH
Q 017383          149 R---YIKAYSRRATARKEL----------GKLKESIEDSEFALRLEPQNQEIK  188 (372)
Q Consensus       149 ~---~~~a~~~lg~~~~~l----------g~~~~A~~~~~~al~l~P~~~~~~  188 (372)
                      +   ...+++.+|.++..+          |++++|+..|++++...|+++.+.
T Consensus       180 ~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~  232 (261)
T 3qky_A          180 DTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLR  232 (261)
T ss_dssp             TSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred             CCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence            8   578999999999988          999999999999999999996554

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.64  E-value=1.1e-14  Score=113.71  Aligned_cols=113  Identities=32%  Similarity=0.522  Sum_probs=106.5

Q ss_pred             hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 017383           83 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATAR  161 (372)
Q Consensus        83 ~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~  161 (372)
                      .+..++.+|..++..|+|++|+.+|++++..+|. ..++.++|.++..+|++++|+..+++++.++|++..+++.+|.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            4556889999999999999999999999999998 999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHH
Q 017383          162 KELGKLKESIEDSEFALRLEPQNQEIKKQLAEVK  195 (372)
Q Consensus       162 ~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~  195 (372)
                      ..+|++++|+..|++++.++|++..++..+..+.
T Consensus        83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  116 (118)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence            9999999999999999999999998887776653

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.64  E-value=4.5e-15  Score=131.62  Aligned_cols=133  Identities=15%  Similarity=0.126  Sum_probs=123.7

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~  138 (372)
                      ..|++++|+..|.+++..+|...  ..+..+|.++...|++++|+.+|++++..+|. ..++..+|.++..+|++++|+.
T Consensus        69 ~~~~~~~A~~~~~~~~~~~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~  146 (243)
T 2q7f_A           69 SVNELERALAFYDKALELDSSAA--TAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALP  146 (243)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHcCCcch--HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHH
Confidence            77999999999999999999854  45779999999999999999999999999998 9999999999999999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHH
Q 017383          139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV  194 (372)
Q Consensus       139 ~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a  194 (372)
                      .+++++.++|.+..+++.+|.++...|++++|+..|++++.+.|++..++..+..+
T Consensus       147 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~  202 (243)
T 2q7f_A          147 YLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVT  202 (243)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998876554443

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.64  E-value=4.3e-15  Score=129.84  Aligned_cols=121  Identities=20%  Similarity=0.173  Sum_probs=112.7

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~  138 (372)
                      ..|++++|+..|.+++  +|   .+.+++.+|.+++..|+|++|+.+|++++.++|. ..+++++|.+|..+|++++|+.
T Consensus        18 ~~~~~~~A~~~~~~a~--~~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~   92 (213)
T 1hh8_A           18 DKKDWKGALDAFSAVQ--DP---HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIK   92 (213)
T ss_dssp             HTTCHHHHHHHHHTSS--SC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HhCCHHHHHHHHHHHc--CC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHH
Confidence            6799999999999996  33   3456889999999999999999999999999998 9999999999999999999999


Q ss_pred             HHHHHHhcCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcH
Q 017383          139 DCTEALNLDDRYI----------------KAYSRRATARKELGKLKESIEDSEFALRLEPQNQ  185 (372)
Q Consensus       139 ~~~~Al~l~p~~~----------------~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~  185 (372)
                      +|++++.+.|.+.                .+++++|.++..+|++++|+.+|++++.++|++.
T Consensus        93 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  155 (213)
T 1hh8_A           93 DLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR  155 (213)
T ss_dssp             HHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred             HHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence            9999999888766                9999999999999999999999999999999874

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.63  E-value=3.1e-15  Score=151.36  Aligned_cols=133  Identities=14%  Similarity=0.046  Sum_probs=102.8

Q ss_pred             CCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHH
Q 017383           61 YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDD  139 (372)
Q Consensus        61 ~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~  139 (372)
                      .|++++|+..|+++++.+|.+..  ++..+|.+++..|+|++|+.+|+++++++|+ ..++.++|.+|..+|++++|+.+
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~--~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~   79 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFV--AWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVL   79 (568)
T ss_dssp             -------------------CCHH--HHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            37889999999999999998544  4779999999999999999999999999998 99999999999999999999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHH
Q 017383          140 CTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVK  195 (372)
Q Consensus       140 ~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~  195 (372)
                      |+++++++|++..+++++|.++..+|++++|+..|++++.++|++..++..+..+.
T Consensus        80 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  135 (568)
T 2vsy_A           80 LQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWR  135 (568)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999988765554443

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.63  E-value=7.4e-16  Score=159.82  Aligned_cols=133  Identities=9%  Similarity=-0.068  Sum_probs=126.3

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~  138 (372)
                      ..|++++|+..|+++++.+|++..+  ++.+|.+++..|+|++|+.+|+++++++|+ ..+++++|.+|..+|++++ +.
T Consensus       445 ~~g~~~~A~~~~~~al~~~p~~~~a--~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~  521 (681)
T 2pzi_A          445 DLGDVAKATRKLDDLAERVGWRWRL--VWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HK  521 (681)
T ss_dssp             HHTCHHHHHHHHHHHHHHHCCCHHH--HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TC
T ss_pred             hcCCHHHHHHHHHHHhccCcchHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HH
Confidence            6799999999999999999995555  779999999999999999999999999998 9999999999999999999 99


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHH
Q 017383          139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVK  195 (372)
Q Consensus       139 ~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~  195 (372)
                      +|++|++++|++..+|+++|.++..+|++++|+.+|++++.++|++..++..+..+.
T Consensus       522 ~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~  578 (681)
T 2pzi_A          522 FYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTL  578 (681)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHT
T ss_pred             HHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999887777664

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.63  E-value=3.6e-15  Score=130.30  Aligned_cols=168  Identities=13%  Similarity=0.048  Sum_probs=133.7

Q ss_pred             HHHhhHHHHHHHHHHHHHHhhhcCCCCCccccccccccCCCCCCCC-CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHH
Q 017383           14 GFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGN   92 (372)
Q Consensus        14 ~~~~~l~~~e~~ik~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~   92 (372)
                      ..+....+|+++++.....+...+....         ....+|..| ..|++++|+..|.+++..+|.+..  .+..+|.
T Consensus        16 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~--~~~~l~~   84 (225)
T 2vq2_A           16 MEYMRGQDYRQATASIEDALKSDPKNEL---------AWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAE--INNNYGW   84 (225)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--HHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHhCccchH---------HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH--HHHHHHH
Confidence            3444556777777777666654431110         001122233 678999999999999999988544  4678999


Q ss_pred             HHHHh-hcHHHHHHHHHHHHc--cCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 017383           93 ECFKQ-KKFKEAIDCYSRSIA--LSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLK  168 (372)
Q Consensus        93 ~~~~~-g~~~~Ai~~y~~al~--~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~  168 (372)
                      +++.. |++++|+.+|++++.  .+|. ..++.++|.++...|++++|+..+++++..+|.+..+++.+|.++..+|+++
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~  164 (225)
T 2vq2_A           85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG  164 (225)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence            99999 999999999999999  5565 8889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHccCC-CcHHHHHHHH
Q 017383          169 ESIEDSEFALRLEP-QNQEIKKQLA  192 (372)
Q Consensus       169 ~A~~~~~~al~l~P-~~~~~~~~l~  192 (372)
                      +|+..|++++.+.| .+..++..+.
T Consensus       165 ~A~~~~~~~~~~~~~~~~~~~~~~~  189 (225)
T 2vq2_A          165 DADYYFKKYQSRVEVLQADDLLLGW  189 (225)
T ss_dssp             HHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHH
Confidence            99999999999999 8877754433

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.63  E-value=3.9e-15  Score=137.85  Aligned_cols=127  Identities=17%  Similarity=0.132  Sum_probs=67.9

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~  138 (372)
                      ..|++++|+..|.+++...|....+  +..+|.++...|++++|+.+|++++..+|. ..++.++|.++..+|++++|+.
T Consensus       137 ~~~~~~~A~~~~~~a~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~  214 (330)
T 3hym_B          137 VESEHDQAMAAYFTAAQLMKGCHLP--MLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEK  214 (330)
T ss_dssp             HHTCHHHHHHHHHHHHHHTTTCSHH--HHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HccCHHHHHHHHHHHHHhccccHHH--HHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHH
Confidence            3455555555555555555553333  334555555555555555555555555555 5555555555555555555555


Q ss_pred             HHHHHHhcC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHH
Q 017383          139 DCTEALNLD---------DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK  188 (372)
Q Consensus       139 ~~~~Al~l~---------p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~  188 (372)
                      .+++++.+.         |.+..+++.+|.++..+|++++|+..|++++.++|++..++
T Consensus       215 ~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  273 (330)
T 3hym_B          215 WFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTY  273 (330)
T ss_dssp             HHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHH
T ss_pred             HHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHH
Confidence            555555543         44445555555555555555555555555555555554443

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.63  E-value=5.1e-16  Score=129.83  Aligned_cols=108  Identities=15%  Similarity=0.129  Sum_probs=98.1

Q ss_pred             HHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 017383           89 ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKL  167 (372)
Q Consensus        89 ~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~  167 (372)
                      .+|.++...|++++|+..|++++..+|. +.+++++|.+|+.+|+|++|+.+|+++++++|+++.+|+++|.++..+|++
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~   81 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT   81 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence            4789999999999999999999999998 888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHccCCCcHHHHHHHHHHHH
Q 017383          168 KESIEDSEFALRLEPQNQEIKKQLAEVKS  196 (372)
Q Consensus       168 ~~A~~~~~~al~l~P~~~~~~~~l~~a~~  196 (372)
                      ++|+.+|+++++++|++..++..++.+..
T Consensus        82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~  110 (150)
T 4ga2_A           82 DKAVECYRRSVELNPTQKDLVLKIAELLC  110 (150)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            99999999999999999998877766543

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.63  E-value=8.6e-15  Score=128.87  Aligned_cols=113  Identities=19%  Similarity=0.158  Sum_probs=106.4

Q ss_pred             HHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHH----------------HHHHHHHhcCHHHHHHHHHHHHhc
Q 017383           84 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYAN----------------RAMAYLKLRRFQEAEDDCTEALNL  146 (372)
Q Consensus        84 a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~----------------la~~~~~~g~~~eA~~~~~~Al~l  146 (372)
                      +..+...|..++..|+|++|+.+|++++.++|+ +.+++.                +|.+|..+|++++|+.+|++++++
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   83 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK   83 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            334678999999999999999999999999998 888888                999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHH
Q 017383          147 DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS  196 (372)
Q Consensus       147 ~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~  196 (372)
                      +|+++.+++++|.++..+|++++|+.+|++++.++|++..++..++.+..
T Consensus        84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~  133 (208)
T 3urz_A           84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYY  133 (208)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999888877653

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.62  E-value=1.1e-14  Score=134.88  Aligned_cols=168  Identities=12%  Similarity=-0.010  Sum_probs=141.0

Q ss_pred             hHHHHHHHHHHHHHHhhhcCCCCCccccccccccCCCCCCCCCCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHh
Q 017383           18 DLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGNSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQ   97 (372)
Q Consensus        18 ~l~~~e~~ik~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~   97 (372)
                      ...+|+++++.....+...+.........        +...+..|++++|+..+.+++..+|.+..+  +..+|.+++..
T Consensus        34 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~~--------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~l~~~~~~~  103 (330)
T 3hym_B           34 YNCDFKMCYKLTSVVMEKDPFHASCLPVH--------IGTLVELNKANELFYLSHKLVDLYPSNPVS--WFAVGCYYLMV  103 (330)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCTTTHHHH--------HHHHHHHTCHHHHHHHHHHHHHHCTTSTHH--HHHHHHHHHHS
T ss_pred             HcCCHHHHHHHHHHHHHcCCCChhhHHHH--------HHHHHHhhhHHHHHHHHHHHHHhCcCCHHH--HHHHHHHHHHh
Confidence            34788888887777776655221111000        011136799999999999999999986555  66999999999


Q ss_pred             h-cHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 017383           98 K-KFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSE  175 (372)
Q Consensus        98 g-~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~  175 (372)
                      | ++++|+.+|++++.++|. ..++..+|.++..+|++++|+..|++++.++|++..+++.+|.++...|++++|+..|+
T Consensus       104 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  183 (330)
T 3hym_B          104 GHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFS  183 (330)
T ss_dssp             CSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            9 999999999999999998 99999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHccCCCcHHHHHHHHHHH
Q 017383          176 FALRLEPQNQEIKKQLAEVK  195 (372)
Q Consensus       176 ~al~l~P~~~~~~~~l~~a~  195 (372)
                      +++.+.|++..++..+..+.
T Consensus       184 ~al~~~~~~~~~~~~l~~~~  203 (330)
T 3hym_B          184 QALSIAPEDPFVMHEVGVVA  203 (330)
T ss_dssp             HHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHHhCCCChHHHHHHHHHH
Confidence            99999999988776655543

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.62  E-value=1.2e-14  Score=126.91  Aligned_cols=133  Identities=14%  Similarity=0.044  Sum_probs=122.5

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHh-cCHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKL-RRFQEAE  137 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~-g~~~eA~  137 (372)
                      ..|++++|+..|.+++..+|....  .+..+|.++...|++++|+.+|++++..+|. ..++.++|.++... |++++|+
T Consensus        20 ~~~~~~~A~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~   97 (225)
T 2vq2_A           20 RGQDYRQATASIEDALKSDPKNEL--AWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESM   97 (225)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHhCccchH--HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHH
Confidence            679999999999999999998544  4779999999999999999999999999998 99999999999999 9999999


Q ss_pred             HHHHHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHH
Q 017383          138 DDCTEALN--LDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV  194 (372)
Q Consensus       138 ~~~~~Al~--l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a  194 (372)
                      ..+++++.  .+|.+..+++.+|.++...|++++|+..|++++.+.|++..++..+..+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~  156 (225)
T 2vq2_A           98 AYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELART  156 (225)
T ss_dssp             HHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence            99999999  6777899999999999999999999999999999999998876554444

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.62  E-value=1.2e-14  Score=131.38  Aligned_cols=174  Identities=12%  Similarity=0.017  Sum_probs=141.6

Q ss_pred             HHHHhhHHHHHHHHHHHHHHhhhcCCCCCccccccccccCCCCCCCC-CCCCchhhHHHHHhhhhcCCCCch--HHHHHH
Q 017383           13 QGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPD--ATSEKE   89 (372)
Q Consensus        13 ~~~~~~l~~~e~~ik~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~~A~~~~~~al~~~p~~~~--a~~~~~   89 (372)
                      ...+-..++|++++....+.+...+.....         ...+|..| ..|++++|+..|.+++. .|.++.  +.++..
T Consensus        10 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~---------~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~   79 (272)
T 3u4t_A           10 ADFLFKNNNYAEAIEVFNKLEAKKYNSPYI---------YNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEY   79 (272)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHTTCCCSTT---------HHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCCCcHHH---------HHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHH
Confidence            345556678888888888877655421110         11122233 78999999999999999 333322  445789


Q ss_pred             HHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 017383           90 LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLK  168 (372)
Q Consensus        90 ~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~  168 (372)
                      +|.++...|++++|+.+|+++++++|. ..++.++|.+|..+|++++|+.+|++++.++|.+..+++.+|...+..++++
T Consensus        80 lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~  159 (272)
T 3u4t_A           80 YGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYV  159 (272)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998 9999999999999999999999999999999999999999995555667999


Q ss_pred             HHHHHHHHHHccCCCcHHHHHHHHHHHH
Q 017383          169 ESIEDSEFALRLEPQNQEIKKQLAEVKS  196 (372)
Q Consensus       169 ~A~~~~~~al~l~P~~~~~~~~l~~a~~  196 (372)
                      +|+..|++++.++|++..++..+..+..
T Consensus       160 ~A~~~~~~a~~~~p~~~~~~~~~~~~~~  187 (272)
T 3u4t_A          160 KADSSFVKVLELKPNIYIGYLWRARANA  187 (272)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence            9999999999999999877666655543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.62  E-value=9.8e-16  Score=158.89  Aligned_cols=134  Identities=11%  Similarity=-0.031  Sum_probs=124.3

Q ss_pred             CCCCCchhhHHHHHhhh--------hcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHH
Q 017383           59 NSYSRNYDPVSHISSSL--------MNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLK  129 (372)
Q Consensus        59 y~~g~~~~A~~~~~~al--------~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~  129 (372)
                      +..|++++|+..|++++        ..+|.+..+  +..+|.+++..|+|++|+..|+++++++|+ ..+|+++|.+|..
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~--~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~  479 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVEL--PLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELL  479 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHH--HHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhH--HHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHH
Confidence            36799999999999999        888986665  669999999999999999999999999998 9999999999999


Q ss_pred             hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHH
Q 017383          130 LRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVK  195 (372)
Q Consensus       130 ~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~  195 (372)
                      +|++++|+.+|++|++++|++..+|+++|.++..+|++++ +.+|+++++++|++..++..++.+.
T Consensus       480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~  544 (681)
T 2pzi_A          480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARAR  544 (681)
T ss_dssp             HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999 9999999999999998876655554

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.62  E-value=7.8e-15  Score=117.56  Aligned_cols=114  Identities=32%  Similarity=0.524  Sum_probs=107.3

Q ss_pred             hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 017383           83 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATAR  161 (372)
Q Consensus        83 ~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~  161 (372)
                      ....++.+|.+++..|+|++|+.+|++++..+|. ..++.++|.++..+|++++|+.+|++++.++|.+..+++++|.++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~   94 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL   94 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            5566889999999999999999999999999998 999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHH
Q 017383          162 KELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS  196 (372)
Q Consensus       162 ~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~  196 (372)
                      ..+|++++|+..|++++.++|++..++..+..+..
T Consensus        95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  129 (133)
T 2lni_A           95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMM  129 (133)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            99999999999999999999999888877766643

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.62  E-value=2.1e-14  Score=128.52  Aligned_cols=131  Identities=12%  Similarity=0.083  Sum_probs=105.6

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHc--cCCC-HHHHHHHHHHHHHhcCHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIA--LSPT-AVAYANRAMAYLKLRRFQEA  136 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~--~~p~-~~~~~~la~~~~~~g~~~eA  136 (372)
                      ..|++++|+..|.+++..+|...  ..+..+|.+++..|++++|+.+|++++.  ..|. ..++.++|.++..+|++++|
T Consensus        83 ~~~~~~~A~~~~~~a~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  160 (252)
T 2ho1_A           83 TEMEPKLADEEYRKALASDSRNA--RVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQA  160 (252)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHCcCcH--HHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHH
Confidence            66888888888888888887743  3466888888888888888888888888  6666 77888888888888888888


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHH
Q 017383          137 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLA  192 (372)
Q Consensus       137 ~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~  192 (372)
                      +..+++++.++|.+..+++.+|.++..+|++++|+..|++++.+.|++..++..+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  216 (252)
T 2ho1_A          161 KEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGI  216 (252)
T ss_dssp             HHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHH
T ss_pred             HHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence            88888888888888888888888888888888888888888888888776654333

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.62  E-value=3.6e-14  Score=118.28  Aligned_cols=118  Identities=35%  Similarity=0.635  Sum_probs=109.1

Q ss_pred             hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 017383           83 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATAR  161 (372)
Q Consensus        83 ~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~  161 (372)
                      .+..++.+|.+++..|+|++|+.+|.+++..+|. ..++.++|.++..+|++++|+.++.+++.++|.++.+++++|.++
T Consensus        12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~   91 (166)
T 1a17_A           12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN   91 (166)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            4556889999999999999999999999999998 999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHH
Q 017383          162 KELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEK  200 (372)
Q Consensus       162 ~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~~~~  200 (372)
                      ..+|++++|+.+|++++.++|++..++..+..+...+..
T Consensus        92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~  130 (166)
T 1a17_A           92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQ  130 (166)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999887666666554443

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.62  E-value=1.7e-14  Score=117.89  Aligned_cols=112  Identities=31%  Similarity=0.508  Sum_probs=105.6

Q ss_pred             hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 017383           83 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRA  158 (372)
Q Consensus        83 ~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg  158 (372)
                      .+..++.+|..++..|+|++|+.+|++++.++|+    ..++.++|.+|..+|++++|+.+|++++.++|++..+++++|
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a  106 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS  106 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence            5566889999999999999999999999999998    788999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHH
Q 017383          159 TARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV  194 (372)
Q Consensus       159 ~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a  194 (372)
                      .++..+|++++|+.+|++++.++|++..++..+..+
T Consensus       107 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  142 (148)
T 2dba_A          107 QALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI  142 (148)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence            999999999999999999999999999887766554

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.61  E-value=1.4e-14  Score=129.63  Aligned_cols=133  Identities=17%  Similarity=0.153  Sum_probs=123.5

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~  138 (372)
                      ..|++++|+..|++++..+|...  .++..+|.+++..|++++|+.+|++++..+|. ..++.++|.+|..+|++++|+.
T Consensus        49 ~~~~~~~A~~~~~~al~~~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~  126 (252)
T 2ho1_A           49 QRGNTEQAKVPLRKALEIDPSSA--DAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQ  126 (252)
T ss_dssp             HTTCTGGGHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HcCChHHHHHHHHHHHhcCCChH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHH
Confidence            67999999999999999998854  45779999999999999999999999999998 9999999999999999999999


Q ss_pred             HHHHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHH
Q 017383          139 DCTEALN--LDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV  194 (372)
Q Consensus       139 ~~~~Al~--l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a  194 (372)
                      .+++++.  .+|.+..+++.+|.++...|++++|+..|++++.+.|.+..++..+..+
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~  184 (252)
T 2ho1_A          127 RLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADL  184 (252)
T ss_dssp             HHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred             HHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence            9999999  8899999999999999999999999999999999999998876555444

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.60  E-value=1.8e-14  Score=133.24  Aligned_cols=136  Identities=13%  Similarity=0.151  Sum_probs=125.6

Q ss_pred             CCCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 017383           59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE  137 (372)
Q Consensus        59 y~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~  137 (372)
                      +..|++++|+..+++++..+|.+.  ..+..+|.++...|++++|+.+|++++..+|+ ..++.++|.++...|++++|+
T Consensus       149 ~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  226 (327)
T 3cv0_A          149 AAPNEYRECRTLLHAALEMNPNDA--QLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEAL  226 (327)
T ss_dssp             TSHHHHHHHHHHHHHHHHHSTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHcccHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence            377999999999999999999854  45779999999999999999999999999998 999999999999999999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC------------cHHHHHHHHHHHH
Q 017383          138 DDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQ------------NQEIKKQLAEVKS  196 (372)
Q Consensus       138 ~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~------------~~~~~~~l~~a~~  196 (372)
                      ..|++++.++|++..+++.+|.++..+|++++|+..|++++.+.|+            +..++..+..+..
T Consensus       227 ~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  297 (327)
T 3cv0_A          227 DAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLN  297 (327)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999            6666666665544

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.60  E-value=3.3e-14  Score=113.04  Aligned_cols=115  Identities=37%  Similarity=0.532  Sum_probs=107.7

Q ss_pred             hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 017383           83 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATAR  161 (372)
Q Consensus        83 ~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~  161 (372)
                      .+..+..+|..++..|+|++|+.+|++++..+|. ..++.++|.++..+|++++|+.++.+++.++|++..+++.+|.++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   90 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL   90 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence            4566889999999999999999999999999998 999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHHH
Q 017383          162 KELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSL  197 (372)
Q Consensus       162 ~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~  197 (372)
                      ..+|++++|+..|++++.++|++..++..+..+...
T Consensus        91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  126 (131)
T 2vyi_A           91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELK  126 (131)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence            999999999999999999999998888777766543

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.60  E-value=2.1e-14  Score=114.38  Aligned_cols=123  Identities=28%  Similarity=0.404  Sum_probs=113.6

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~  138 (372)
                      ..|++++|+..+.+++..+|...  ..+..+|.++...|++++|+.+|++++...|. ..++.++|.++...|++++|+.
T Consensus        13 ~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~   90 (136)
T 2fo7_A           13 KQGDYDEAIEYYQKALELDPRSA--EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIE   90 (136)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             HcCcHHHHHHHHHHHHHcCCcch--hHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHH
Confidence            56899999999999999988754  44778999999999999999999999999998 8899999999999999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCc
Q 017383          139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN  184 (372)
Q Consensus       139 ~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~  184 (372)
                      .+.+++..+|.+..+++.+|.++...|++++|...|++++.++|++
T Consensus        91 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A           91 YYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS  136 (136)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence            9999999999999999999999999999999999999999998863

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.60  E-value=2.7e-14  Score=133.36  Aligned_cols=171  Identities=15%  Similarity=0.093  Sum_probs=133.3

Q ss_pred             HHHHhhHHHHHHHHHHHHHHhhhcCCCCCccccccccccCCCCCCCC-CCCCchhhHHHHHhhhhcCCCCchHHHHHHHH
Q 017383           13 QGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELG   91 (372)
Q Consensus        13 ~~~~~~l~~~e~~ik~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g   91 (372)
                      ...+-..++|++++......+...+....         .....|..| ..|++++|+..|++++..+|.+..+  +..+|
T Consensus        10 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~---------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~l~   78 (359)
T 3ieg_A           10 GKKLLAAGQLADALSQFHAAVDGDPDNYI---------AYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAA--RLQRG   78 (359)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH--HHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCcccHH---------HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchH--HHHHH
Confidence            34444556778887777777655441110         001122233 6789999999999999999885544  67899


Q ss_pred             HHHHHhhcHHHHHHHHHHHHccCC---C-HHHHHHH------------HHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHH
Q 017383           92 NECFKQKKFKEAIDCYSRSIALSP---T-AVAYANR------------AMAYLKLRRFQEAEDDCTEALNLDDRYIKAYS  155 (372)
Q Consensus        92 ~~~~~~g~~~~Ai~~y~~al~~~p---~-~~~~~~l------------a~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~  155 (372)
                      .++...|++++|+.+|++++.++|   + ..++..+            |.++...|++++|+..+++++..+|.++.++.
T Consensus        79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  158 (359)
T 3ieg_A           79 HLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRE  158 (359)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHH
Confidence            999999999999999999999999   6 6666555            78999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHH
Q 017383          156 RRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV  194 (372)
Q Consensus       156 ~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a  194 (372)
                      .+|.++..+|++++|+..|++++.+.|++..++..+..+
T Consensus       159 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~  197 (359)
T 3ieg_A          159 LRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTL  197 (359)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            999999999999999999999999999988776444433

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.60  E-value=1e-14  Score=137.61  Aligned_cols=148  Identities=18%  Similarity=0.114  Sum_probs=125.1

Q ss_pred             CCCCchhhHH-HHHhhhhcCCCCc--hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHH
Q 017383           60 SYSRNYDPVS-HISSSLMNEESTP--DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQE  135 (372)
Q Consensus        60 ~~g~~~~A~~-~~~~al~~~p~~~--~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~e  135 (372)
                      ..|+|++|+. .|.+++...|.++  .+..++.+|.+++..|+|++|+.+|+++++.+|. ..++.++|.++..+|++++
T Consensus        37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~  116 (368)
T 1fch_A           37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELL  116 (368)
T ss_dssp             ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHH
Confidence            6799999999 9999999998765  2445779999999999999999999999999998 9999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHH-------------------------HH
Q 017383          136 AEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK-------------------------KQ  190 (372)
Q Consensus       136 A~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~-------------------------~~  190 (372)
                      |+..|++++.++|++..+++.+|.++..+|++++|+..|++++.+.|++...+                         +.
T Consensus       117 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (368)
T 1fch_A          117 AISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSL  196 (368)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhccc
Confidence            99999999999999999999999999999999999999999999999865443                         56


Q ss_pred             HHHHHHHHHHHHHhhhh
Q 017383          191 LAEVKSLYEKEVFQKAS  207 (372)
Q Consensus       191 l~~a~~~~~~~~~~~~~  207 (372)
                      +.+|...+.+++...+.
T Consensus       197 ~~~A~~~~~~a~~~~p~  213 (368)
T 1fch_A          197 FLEVKELFLAAVRLDPT  213 (368)
T ss_dssp             HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHHhCcC
Confidence            67777777777766654

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.59  E-value=4e-14  Score=131.56  Aligned_cols=164  Identities=11%  Similarity=0.033  Sum_probs=82.4

Q ss_pred             HHHHHhhHHHHHHHHHHHHHHhhhcC-CCCCccccccccccCCCCCCCC-CCCCchhhHHHHHhhhhcCCCCchHHHHHH
Q 017383           12 FQGFLNDLQDWDLSLNEKDKKMKHKA-SSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKE   89 (372)
Q Consensus        12 l~~~~~~l~~~e~~ik~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~y-~~g~~~~A~~~~~~al~~~p~~~~a~~~~~   89 (372)
                      +..++....+++++++..++.+.... +......        ...|..| ..|++++|+..|.+     |.+..+  +..
T Consensus        71 la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~--------~~la~~~~~~g~~~~Al~~l~~-----~~~~~~--~~~  135 (291)
T 3mkr_A           71 FAEYLASHSRRDAIVAELDREMSRSVDVTNTTFL--------LMAASIYFYDQNPDAALRTLHQ-----GDSLEC--MAM  135 (291)
T ss_dssp             HHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHH--------HHHHHHHHHTTCHHHHHHHHTT-----CCSHHH--HHH
T ss_pred             HHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHH--------HHHHHHHHHCCCHHHHHHHHhC-----CCCHHH--HHH
Confidence            34555555667777776666553321 1100000        0011122 44566666665555     332232  445


Q ss_pred             HHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHH--HHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 017383           90 LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRA--MAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGK  166 (372)
Q Consensus        90 ~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la--~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~  166 (372)
                      +|.++...|++++|+.+|+++++.+|+ .......|  ..+...|++++|+..|++++..+|+++.+++++|.++..+|+
T Consensus       136 l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~  215 (291)
T 3mkr_A          136 TVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGR  215 (291)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Confidence            566666666666666666666655555 21111111  112223556666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHHHccCCCcHHHHHH
Q 017383          167 LKESIEDSEFALRLEPQNQEIKKQ  190 (372)
Q Consensus       167 ~~~A~~~~~~al~l~P~~~~~~~~  190 (372)
                      +++|+..|++++.++|++++++..
T Consensus       216 ~~eA~~~l~~al~~~p~~~~~l~~  239 (291)
T 3mkr_A          216 WEAAEGVLQEALDKDSGHPETLIN  239 (291)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHH
Confidence            666666666666666665555433

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.58  E-value=2e-14  Score=127.89  Aligned_cols=127  Identities=16%  Similarity=0.077  Sum_probs=114.5

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCch-HHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC----HHHHHHHHHHHHH-----
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPD-ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLK-----  129 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~-a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~~la~~~~~-----  129 (372)
                      ..|++++|+..|++++...|..+. ..+++.+|.+++..|+|++|+..|+++++.+|+    ..+++.+|.++..     
T Consensus        16 ~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~   95 (225)
T 2yhc_A           16 QDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSA   95 (225)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--
T ss_pred             HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhh
Confidence            679999999999999999987653 356889999999999999999999999999997    4589999999987     


Q ss_pred             -------------hcCHHHHHHHHHHHHhcCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHc
Q 017383          130 -------------LRRFQEAEDDCTEALNLDDRYIKAY-----------------SRRATARKELGKLKESIEDSEFALR  179 (372)
Q Consensus       130 -------------~g~~~eA~~~~~~Al~l~p~~~~a~-----------------~~lg~~~~~lg~~~~A~~~~~~al~  179 (372)
                                   +|++++|+..|++++..+|++..++                 +.+|.++...|++++|+..|+++++
T Consensus        96 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~  175 (225)
T 2yhc_A           96 LQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLR  175 (225)
T ss_dssp             ------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence                         5799999999999999999986554                 6789999999999999999999999


Q ss_pred             cCCCcHH
Q 017383          180 LEPQNQE  186 (372)
Q Consensus       180 l~P~~~~  186 (372)
                      ..|+++.
T Consensus       176 ~~p~~~~  182 (225)
T 2yhc_A          176 DYPDTQA  182 (225)
T ss_dssp             HSTTSHH
T ss_pred             HCcCCCc
Confidence            9999864

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.58  E-value=4.8e-14  Score=112.21  Aligned_cols=116  Identities=25%  Similarity=0.430  Sum_probs=106.0

Q ss_pred             hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC-------HHHH
Q 017383           83 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY-------IKAY  154 (372)
Q Consensus        83 ~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~-------~~a~  154 (372)
                      .+..++.+|..++..|+|++|+.+|.+++..+|. ..++.++|.+|..+|++++|+.+|++++.++|.+       ..++
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   82 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY   82 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence            3456889999999999999999999999999998 9999999999999999999999999999999887       9999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHH
Q 017383          155 SRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYE  199 (372)
Q Consensus       155 ~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~~~  199 (372)
                      +++|.++..+|++++|+.+|++++.+.| +......+..+...++
T Consensus        83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~  126 (131)
T 1elr_A           83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK  126 (131)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999 5777777776665543

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.58  E-value=2.6e-14  Score=137.57  Aligned_cols=118  Identities=29%  Similarity=0.443  Sum_probs=109.7

Q ss_pred             hHHHHHHHHHHHHHhhcHHHHHHHHHHHHc----------------cCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 017383           83 DATSEKELGNECFKQKKFKEAIDCYSRSIA----------------LSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALN  145 (372)
Q Consensus        83 ~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~----------------~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~  145 (372)
                      .+..++.+|+.++..|+|++|+.+|+++++                ++|. ..+|.++|.||+.+|+|++|+.+|++|+.
T Consensus       222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~  301 (370)
T 1ihg_A          222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE  301 (370)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            345688999999999999999999999998                6676 89999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHH
Q 017383          146 LDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEK  200 (372)
Q Consensus       146 l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~~~~  200 (372)
                      ++|+++.+|+++|.+|..+|++++|+.+|+++++++|++..++..+..+....++
T Consensus       302 ~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~  356 (370)
T 1ihg_A          302 IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKA  356 (370)
T ss_dssp             TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998888887765544

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.58  E-value=6.1e-14  Score=112.40  Aligned_cols=106  Identities=15%  Similarity=0.143  Sum_probs=99.2

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHccCCC-H---HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---HHHHHHHHH
Q 017383           87 EKELGNECFKQKKFKEAIDCYSRSIALSPT-A---VAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY---IKAYSRRAT  159 (372)
Q Consensus        87 ~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~---~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~---~~a~~~lg~  159 (372)
                      ++.+|.+++..|+|++|+..|++++..+|+ .   .+++.+|.+++.+|++++|+..|++++..+|++   +.+++.+|.
T Consensus         5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~   84 (129)
T 2xev_A            5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL   84 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence            568999999999999999999999999998 4   799999999999999999999999999999999   899999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHH
Q 017383          160 ARKELGKLKESIEDSEFALRLEPQNQEIKKQLA  192 (372)
Q Consensus       160 ~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~  192 (372)
                      ++..+|++++|+..|++++...|++..+.....
T Consensus        85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~  117 (129)
T 2xev_A           85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQE  117 (129)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence            999999999999999999999999987654433

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.58  E-value=1.3e-14  Score=140.92  Aligned_cols=106  Identities=21%  Similarity=0.293  Sum_probs=54.2

Q ss_pred             HHHHHHhhcHHHHHHHHHHHHccCCC-----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 017383           91 GNECFKQKKFKEAIDCYSRSIALSPT-----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG  165 (372)
Q Consensus        91 g~~~~~~g~~~~Ai~~y~~al~~~p~-----~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg  165 (372)
                      |.+++..|++++|+.+|++++.++|.     ..++.++|.++..+|++++|+..|++++.++|++..+|+.+|.++..+|
T Consensus       264 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~  343 (450)
T 2y4t_A          264 AEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEE  343 (450)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhc
Confidence            44555555555555555555555444     2244455555555555555555555555555555555555555555555


Q ss_pred             CHHHHHHHHHHHHccCCCcHHHHHHHHHHHH
Q 017383          166 KLKESIEDSEFALRLEPQNQEIKKQLAEVKS  196 (372)
Q Consensus       166 ~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~  196 (372)
                      ++++|+.+|++++.++|++..++..+..+..
T Consensus       344 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  374 (450)
T 2y4t_A          344 MYDEAIQDYETAQEHNENDQQIREGLEKAQR  374 (450)
T ss_dssp             CHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence            5555555555555555555554444444433

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.58  E-value=2.8e-14  Score=120.36  Aligned_cols=124  Identities=19%  Similarity=0.146  Sum_probs=117.6

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~  138 (372)
                      ..|++++|+..+.+++..+|....  .+..+|.+++..|++++|+.+|++++..+|. ..++..+|.++..+|++++|+.
T Consensus        54 ~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~  131 (186)
T 3as5_A           54 KTGAVDRGTELLERSLADAPDNVK--VATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAID  131 (186)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHH
Confidence            789999999999999999988544  4779999999999999999999999999998 9999999999999999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcH
Q 017383          139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ  185 (372)
Q Consensus       139 ~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~  185 (372)
                      .+++++..+|.+..+++.+|.++...|++++|...|++++.+.|++.
T Consensus       132 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~  178 (186)
T 3as5_A          132 SFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGAS  178 (186)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Confidence            99999999999999999999999999999999999999999988764

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.57  E-value=6.6e-14  Score=126.40  Aligned_cols=120  Identities=19%  Similarity=0.081  Sum_probs=98.9

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~  138 (372)
                      ..|++++|+..|++++..+|.+..+  +..+|.+++..|+|++|+.+|++++.++|. ..++.++|.+|..+|++++|+.
T Consensus        55 ~~~~~~~A~~~~~~al~~~~~~~~~--~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~  132 (275)
T 1xnf_A           55 SLGLRALARNDFSQALAIRPDMPEV--FNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQD  132 (275)
T ss_dssp             HTTCHHHHHHHHHHHHHHCCCCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HcccHHHHHHHHHHHHHcCCCcHHH--HHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHH
Confidence            7899999999999999999985544  779999999999999999999999999998 9999999999999999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 017383          139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEP  182 (372)
Q Consensus       139 ~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P  182 (372)
                      .|++++.++|++...+...+.+ ...|++++|+..|++++...|
T Consensus       133 ~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~  175 (275)
T 1xnf_A          133 DLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEKSD  175 (275)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCC
Confidence            9999999999886444444333 333555555555555544443

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.57  E-value=1.4e-14  Score=134.11  Aligned_cols=138  Identities=9%  Similarity=0.006  Sum_probs=124.9

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~  138 (372)
                      ..|++++|+..|++++..+|++..+  +..+|.++...|++++|+..|++++..+|+ ...+...+..+...++..+|+.
T Consensus       129 ~~g~~~~A~~~~~~al~~~P~~~~a--~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~  206 (287)
T 3qou_A          129 QESNYTDALPLLXDAWQLSNQNGEI--GLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQ  206 (287)
T ss_dssp             HTTCHHHHHHHHHHHHHHTTSCHHH--HHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             hCCCHHHHHHHHHHHHHhCCcchhH--HHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHH
Confidence            6799999999999999999996655  669999999999999999999999999998 6667788888999999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCc--HHHHHHHHHHHHHHH
Q 017383          139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN--QEIKKQLAEVKSLYE  199 (372)
Q Consensus       139 ~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~--~~~~~~l~~a~~~~~  199 (372)
                      .+++++.++|++..+++++|.++...|++++|+..|+++++++|++  ..++..+..+....+
T Consensus       207 ~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g  269 (287)
T 3qou_A          207 QLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG  269 (287)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred             HHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999999999999999998  777777776655443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.57  E-value=1.1e-14  Score=122.27  Aligned_cols=98  Identities=20%  Similarity=0.149  Sum_probs=87.8

Q ss_pred             HHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCH----------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 017383           95 FKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRF----------QEAEDDCTEALNLDDRYIKAYSRRATARKE  163 (372)
Q Consensus        95 ~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~----------~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~  163 (372)
                      -+.+.|++|+.+|+++++++|+ +.+|+++|.++..++++          ++|+..|++||+++|++..+|+++|.+|..
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~   92 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS   92 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence            4678899999999999999998 99999999999999875          599999999999999999999999999998


Q ss_pred             cC-----------CHHHHHHHHHHHHccCCCcHHHHHHHH
Q 017383          164 LG-----------KLKESIEDSEFALRLEPQNQEIKKQLA  192 (372)
Q Consensus       164 lg-----------~~~~A~~~~~~al~l~P~~~~~~~~l~  192 (372)
                      +|           ++++|+.+|++|+.++|++...+..+.
T Consensus        93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~  132 (158)
T 1zu2_A           93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLE  132 (158)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            85           899999999999999999976654443

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.56  E-value=1.8e-15  Score=140.25  Aligned_cols=126  Identities=13%  Similarity=0.095  Sum_probs=59.3

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCch----HHHHHHHHHHHHHh-hcHHHHHHHHHHHHccCCC-------HHHHHHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPD----ATSEKELGNECFKQ-KKFKEAIDCYSRSIALSPT-------AVAYANRAMAY  127 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~----a~~~~~~g~~~~~~-g~~~~Ai~~y~~al~~~p~-------~~~~~~la~~~  127 (372)
                      ..|++++|+.+|++++.+.+...+    +.++.++|.+|... |++++|+.+|++++++.|.       ..++.++|.+|
T Consensus        89 ~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~  168 (292)
T 1qqe_A           89 SGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLK  168 (292)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence            445555555555555554432211    23344555555553 5555555555555554432       23445555555


Q ss_pred             HHhcCHHHHHHHHHHHHhcCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcH
Q 017383          128 LKLRRFQEAEDDCTEALNLDDRYIK-------AYSRRATARKELGKLKESIEDSEFALRLEPQNQ  185 (372)
Q Consensus       128 ~~~g~~~eA~~~~~~Al~l~p~~~~-------a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~  185 (372)
                      ..+|+|++|+.+|++++.+.|++..       +++++|.++..+|++++|+.+|++++.++|++.
T Consensus       169 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  233 (292)
T 1qqe_A          169 ALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA  233 (292)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----
T ss_pred             HHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence            5555555555555555555444321       344555555555555555555555555555443

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.56  E-value=2.9e-14  Score=110.47  Aligned_cols=105  Identities=20%  Similarity=0.270  Sum_probs=98.7

Q ss_pred             CCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC--CHHHH
Q 017383           78 EESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR--YIKAY  154 (372)
Q Consensus        78 ~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~--~~~a~  154 (372)
                      +|.+..+  +..+|.+++..|+|++|+.+|+++++++|. ..++.++|.++..+|++++|+.++++++.++|.  +..++
T Consensus         2 ~p~~~~~--~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~   79 (112)
T 2kck_A            2 VDQNPEE--YYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVW   79 (112)
T ss_dssp             CCSSTTG--GGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHH
T ss_pred             CCCcHHH--HHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHH
Confidence            4554444  669999999999999999999999999998 999999999999999999999999999999999  99999


Q ss_pred             HHHHHHHHHc-CCHHHHHHHHHHHHccCCCc
Q 017383          155 SRRATARKEL-GKLKESIEDSEFALRLEPQN  184 (372)
Q Consensus       155 ~~lg~~~~~l-g~~~~A~~~~~~al~l~P~~  184 (372)
                      +.+|.++..+ |++++|+.+|++++...|++
T Consensus        80 ~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           80 AAKADALRYIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             HHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence            9999999999 99999999999999999975

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.55  E-value=3.7e-14  Score=140.69  Aligned_cols=146  Identities=16%  Similarity=0.181  Sum_probs=126.8

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~  138 (372)
                      ..|++++|+..|.+++..+|.+..+  +..+|.++...|+|++|+.+|++++.++|. ..++.++|.++..+|++++|+.
T Consensus       288 ~~~~~~~A~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~  365 (537)
T 3fp2_A          288 DKENSQEFFKFFQKAVDLNPEYPPT--YYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEA  365 (537)
T ss_dssp             CSSCCHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HhcCHHHHHHHHHHHhccCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            7799999999999999999885544  779999999999999999999999999998 8899999999999999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHH----------------H----------HHHH
Q 017383          139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------------K----------KQLA  192 (372)
Q Consensus       139 ~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~----------------~----------~~l~  192 (372)
                      .|++++.++|++..+++.+|.++...|++++|+..|++++.+.|++...                .          +.+.
T Consensus       366 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  445 (537)
T 3fp2_A          366 FFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFN  445 (537)
T ss_dssp             HHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHH
T ss_pred             HHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHH
Confidence            9999999999999999999999999999999999999999988765322                1          6667


Q ss_pred             HHHHHHHHHHHhhhh
Q 017383          193 EVKSLYEKEVFQKAS  207 (372)
Q Consensus       193 ~a~~~~~~~~~~~~~  207 (372)
                      +|...+++++...+.
T Consensus       446 ~A~~~~~~a~~~~p~  460 (537)
T 3fp2_A          446 AAIKLLTKACELDPR  460 (537)
T ss_dssp             HHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHhCCC
Confidence            777777776666553

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.55  E-value=3.9e-14  Score=137.57  Aligned_cols=168  Identities=12%  Similarity=0.124  Sum_probs=134.6

Q ss_pred             HhhHHHHHHHHHHHHHHhhhcCCCCCccccccccccCCCCCCCC-CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHH
Q 017383           16 LNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNEC   94 (372)
Q Consensus        16 ~~~l~~~e~~ik~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~   94 (372)
                      +....+|++++......+...+....         ....+|..| ..|++++|+..|.+++..+|.+.  ..+..+|.+|
T Consensus       153 ~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~  221 (450)
T 2y4t_A          153 AFGSGDYTAAIAFLDKILEVCVWDAE---------LRELRAECFIKEGEPRKAISDLKAASKLKNDNT--EAFYKISTLY  221 (450)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCH--HHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCChH---------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHH
Confidence            44566777777777766654431110         001123334 78999999999999999998854  4477999999


Q ss_pred             HHhhcHHHHHHHHHHHHccCCC-HHHHHHH------------HHHHHHhcCHHHHHHHHHHHHhcCCCCH----HHHHHH
Q 017383           95 FKQKKFKEAIDCYSRSIALSPT-AVAYANR------------AMAYLKLRRFQEAEDDCTEALNLDDRYI----KAYSRR  157 (372)
Q Consensus        95 ~~~g~~~~Ai~~y~~al~~~p~-~~~~~~l------------a~~~~~~g~~~eA~~~~~~Al~l~p~~~----~a~~~l  157 (372)
                      ...|++++|+.+|++++.++|+ ..++..+            |.++...|++++|+..|++++.++|+++    .++..+
T Consensus       222 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l  301 (450)
T 2y4t_A          222 YQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERI  301 (450)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence            9999999999999999999998 5555444            9999999999999999999999999984    478999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHH
Q 017383          158 ATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV  194 (372)
Q Consensus       158 g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a  194 (372)
                      |.++..+|++++|+..|++++.++|++..++..+..+
T Consensus       302 ~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~  338 (450)
T 2y4t_A          302 CHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEA  338 (450)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            9999999999999999999999999998876444433

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.55  E-value=2.2e-13  Score=107.25  Aligned_cols=112  Identities=35%  Similarity=0.491  Sum_probs=105.9

Q ss_pred             HHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 017383           84 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARK  162 (372)
Q Consensus        84 a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~  162 (372)
                      +..+..+|.+++..|++++|+.+|.+++..+|. ..++.++|.++...|++++|+..+++++.++|.+..+++.+|.++.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~   88 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY   88 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence            556789999999999999999999999999998 8999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHH
Q 017383          163 ELGKLKESIEDSEFALRLEPQNQEIKKQLAEVK  195 (372)
Q Consensus       163 ~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~  195 (372)
                      .+|++++|+..|++++.++|++..++..+..+.
T Consensus        89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  121 (125)
T 1na0_A           89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK  121 (125)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            999999999999999999999998887776654

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.54  E-value=1.9e-14  Score=142.83  Aligned_cols=177  Identities=16%  Similarity=0.132  Sum_probs=141.9

Q ss_pred             HHHHhhHHHHHHHHHHHHHHhhhcCCCCCccccccccccCCCCCCCC-CCCCchhhHHHHHhhhhcCCCCchHHHHHHHH
Q 017383           13 QGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELG   91 (372)
Q Consensus        13 ~~~~~~l~~~e~~ik~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g   91 (372)
                      .++.....+|++++...+..+...+........  ........|..| ..|++++|+..|.+++..+|.   ...+..+|
T Consensus       209 ~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~--~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~l~  283 (537)
T 3fp2_A          209 EGYLVANDLLTKSTDMYHSLLSANTVDDPLREN--AALALCYTGIFHFLKNNLLDAQVLLQESINLHPT---PNSYIFLA  283 (537)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC---HHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHH--HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC---chHHHHHH
Confidence            445555667888888777777555421100000  000001122233 679999999999999999987   44577999


Q ss_pred             HHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 017383           92 NECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKES  170 (372)
Q Consensus        92 ~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A  170 (372)
                      .+++..|++++|+.+|++++..+|+ ..++..+|.++...|++++|+..|++++.++|++..+++.+|.++..+|++++|
T Consensus       284 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A  363 (537)
T 3fp2_A          284 LTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTES  363 (537)
T ss_dssp             HHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            9999999999999999999999998 999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHccCCCcHHHHHHHHHH
Q 017383          171 IEDSEFALRLEPQNQEIKKQLAEV  194 (372)
Q Consensus       171 ~~~~~~al~l~P~~~~~~~~l~~a  194 (372)
                      +..|++++.+.|++..++..++.+
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~l~~~  387 (537)
T 3fp2_A          364 EAFFNETKLKFPTLPEVPTFFAEI  387 (537)
T ss_dssp             HHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCChHHHHHHHHH
Confidence            999999999999998876544433

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.54  E-value=2.6e-14  Score=122.07  Aligned_cols=135  Identities=13%  Similarity=0.037  Sum_probs=114.0

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCCHHHHHHHHHHH-HHhcCHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAY-LKLRRFQEAED  138 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~~la~~~-~~~g~~~eA~~  138 (372)
                      ..|++++|+..|++++..+|++..+  +..+|.++...|++++|+.+|++++..+|++..+..++.+. ...+...+|+.
T Consensus        18 ~~g~~~~A~~~~~~al~~~P~~~~a--~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~a~~   95 (176)
T 2r5s_A           18 QQGEHAQALNVIQTLSDELQSRGDV--KLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPELK   95 (176)
T ss_dssp             HTTCHHHHHHHHHTSCHHHHTSHHH--HHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHCCCcHHH--HHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccchHHH
Confidence            6799999999999999999996555  67999999999999999999999999998644444445443 33344556899


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCc--HHHHHHHHHHHH
Q 017383          139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN--QEIKKQLAEVKS  196 (372)
Q Consensus       139 ~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~--~~~~~~l~~a~~  196 (372)
                      .+++++.++|+++.+++.+|.++...|++++|+..|++++.++|+.  ..++..+..+..
T Consensus        96 ~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~  155 (176)
T 2r5s_A           96 RLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILS  155 (176)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999976  446666655544

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.54  E-value=9.3e-15  Score=122.72  Aligned_cols=115  Identities=10%  Similarity=-0.041  Sum_probs=98.5

Q ss_pred             HHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 017383           94 CFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIE  172 (372)
Q Consensus        94 ~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~  172 (372)
                      +...+++-.+-..|++++.++|+ ..+++++|.+++.+|+|++|+..|++++.++|+++.+|+++|.++..+|++++|+.
T Consensus        12 ~~~l~~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~   91 (151)
T 3gyz_A           12 STAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAAD   91 (151)
T ss_dssp             HHHHHHHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHH
Confidence            34455555566778899999998 99999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHccCCCcHHHHHH----------HHHHHHHHHHHHHhhhhh
Q 017383          173 DSEFALRLEPQNQEIKKQ----------LAEVKSLYEKEVFQKASK  208 (372)
Q Consensus       173 ~~~~al~l~P~~~~~~~~----------l~~a~~~~~~~~~~~~~~  208 (372)
                      +|++++.++|+++.++..          +.+|...|++++...+..
T Consensus        92 ~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~  137 (151)
T 3gyz_A           92 LYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE  137 (151)
T ss_dssp             HHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred             HHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence            999999999999888644          455556666665555433

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.54  E-value=2.4e-14  Score=132.26  Aligned_cols=98  Identities=12%  Similarity=0.212  Sum_probs=68.0

Q ss_pred             HHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 017383           94 CFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIE  172 (372)
Q Consensus        94 ~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~  172 (372)
                      +...|++++|+.+|++++..+|. ..++..+|.++...|++++|+..+++++.++|++..++..+|.++...|++++|+.
T Consensus       148 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  227 (327)
T 3cv0_A          148 FAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALD  227 (327)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence            44444445555555555555555 56677777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHccCCCcHHHHHHH
Q 017383          173 DSEFALRLEPQNQEIKKQL  191 (372)
Q Consensus       173 ~~~~al~l~P~~~~~~~~l  191 (372)
                      .|++++.+.|++..++..+
T Consensus       228 ~~~~a~~~~~~~~~~~~~l  246 (327)
T 3cv0_A          228 AYNRALDINPGYVRVMYNM  246 (327)
T ss_dssp             HHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHH
Confidence            7777777777776665333

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.54  E-value=1.2e-14  Score=134.64  Aligned_cols=127  Identities=10%  Similarity=-0.073  Sum_probs=112.9

Q ss_pred             CCCCchhhHHHHHhhhhcCCCC----chHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-------HHHHHHHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEEST----PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------AVAYANRAMAYL  128 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~----~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-------~~~~~~la~~~~  128 (372)
                      ..|++++|+.+|.+++.+.+..    ..+.++.++|.+|...|+|++|+.+|++++.+.+.       +.++.++|.+|.
T Consensus        49 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~  128 (292)
T 1qqe_A           49 LRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILE  128 (292)
T ss_dssp             HTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            6799999999999999875322    23567899999999999999999999999998753       568999999999


Q ss_pred             Hh-cCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHH
Q 017383          129 KL-RRFQEAEDDCTEALNLDDRY------IKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE  186 (372)
Q Consensus       129 ~~-g~~~eA~~~~~~Al~l~p~~------~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~  186 (372)
                      .. |++++|+.+|++|+.+.|..      ..++.++|.++..+|++++|+.+|++++.+.|++..
T Consensus       129 ~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  193 (292)
T 1qqe_A          129 NDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL  193 (292)
T ss_dssp             HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT
T ss_pred             HhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCc
Confidence            96 99999999999999998764      578999999999999999999999999999987653

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.54  E-value=5.2e-14  Score=125.19  Aligned_cols=164  Identities=7%  Similarity=-0.027  Sum_probs=131.5

Q ss_pred             HhhHHHHHHHHHHHHHHhhhcCCCCCccccccccccCCCCCCCC-CCCCchhhHHHHHhhhhcCCCCchH-HHHHHHHHH
Q 017383           16 LNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDA-TSEKELGNE   93 (372)
Q Consensus        16 ~~~l~~~e~~ik~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~~A~~~~~~al~~~p~~~~a-~~~~~~g~~   93 (372)
                      +-..++|++++...+..+...+......      .+...+|..| ..|++++|+..|+++++..|++..+ .+++.+|.+
T Consensus        14 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~------~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~   87 (225)
T 2yhc_A           14 KLQDGNWRQAITQLEALDNRYPFGPYSQ------QVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLT   87 (225)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTTSTTHH------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCChHHH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHH
Confidence            3445788888888888776554211100      0011123333 7899999999999999999997653 457788998


Q ss_pred             HHH------------------hhcHHHHHHHHHHHHccCCC-HHHH-----------------HHHHHHHHHhcCHHHHH
Q 017383           94 CFK------------------QKKFKEAIDCYSRSIALSPT-AVAY-----------------ANRAMAYLKLRRFQEAE  137 (372)
Q Consensus        94 ~~~------------------~g~~~~Ai~~y~~al~~~p~-~~~~-----------------~~la~~~~~~g~~~eA~  137 (372)
                      ++.                  .|++++|+.+|++++..+|+ ..++                 ..+|.+|+..|++.+|+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~  167 (225)
T 2yhc_A           88 NMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVV  167 (225)
T ss_dssp             HHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence            876                  58999999999999999998 2221                 57899999999999999


Q ss_pred             HHHHHHHhcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcH
Q 017383          138 DDCTEALNLDDRYI---KAYSRRATARKELGKLKESIEDSEFALRLEPQNQ  185 (372)
Q Consensus       138 ~~~~~Al~l~p~~~---~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~  185 (372)
                      ..|+++++.+|+++   .+++.+|.++..+|++++|+..++.+....|++.
T Consensus       168 ~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~  218 (225)
T 2yhc_A          168 NRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL  218 (225)
T ss_dssp             HHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred             HHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence            99999999999985   7899999999999999999999999999888753

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.54  E-value=2.2e-13  Score=126.45  Aligned_cols=142  Identities=13%  Similarity=0.070  Sum_probs=115.5

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~  138 (372)
                      .+|++++|+..|++++..+|+.........+...+...|++++|+.+|+++++.+|. +.+++++|.++..+|++++|+.
T Consensus       142 ~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~  221 (291)
T 3mkr_A          142 KLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEG  221 (291)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence            779999999999999999987433322111223344558999999999999999998 9999999999999999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHH
Q 017383          139 DCTEALNLDDRYIKAYSRRATARKELGKLKE-SIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEV  202 (372)
Q Consensus       139 ~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~-A~~~~~~al~l~P~~~~~~~~l~~a~~~~~~~~  202 (372)
                      .|++++.++|+++.+++++|.++..+|++++ +..++++++.++|+++.+.. +.+....|.+.+
T Consensus       222 ~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d-~~~~~~~fd~~~  285 (291)
T 3mkr_A          222 VLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE-YRAKENDFDRLV  285 (291)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH-HHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH-HHHHHHHHHHHH
Confidence            9999999999999999999999999999976 56888999999999987754 444444555443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.54  E-value=8.7e-14  Score=115.94  Aligned_cols=118  Identities=14%  Similarity=0.133  Sum_probs=106.6

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~  138 (372)
                      ..|++++|+..|.+++..+|.+.  ..+..+|.+++..|+|++|+.+|.+++.++|. ..+++++|.++..+|++++|+.
T Consensus        25 ~~~~~~~A~~~~~~al~~~~~~~--~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~  102 (166)
T 1a17_A           25 KAKDYENAIKFYSQAIELNPSNA--IYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALR  102 (166)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HccCHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHH
Confidence            67999999999999999999854  45779999999999999999999999999998 9999999999999999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHc
Q 017383          139 DCTEALNLDDRYIKAYSRRATA--RKELGKLKESIEDSEFALR  179 (372)
Q Consensus       139 ~~~~Al~l~p~~~~a~~~lg~~--~~~lg~~~~A~~~~~~al~  179 (372)
                      +|++++.++|.+..++..++.+  +...|++++|+..+.++..
T Consensus       103 ~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  145 (166)
T 1a17_A          103 DYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS  145 (166)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence            9999999999999988555554  8888999999988876543

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.54  E-value=5.8e-14  Score=141.46  Aligned_cols=127  Identities=14%  Similarity=0.110  Sum_probs=67.2

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~  138 (372)
                      ..|++++|+..|++++...|.+..+  +..+|.+|...|++++|+.+|+++++.+|. ..+|..+|.+|...|++++|+.
T Consensus       419 ~~g~~~~A~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  496 (597)
T 2xpi_A          419 IEGEHDQAISAYTTAARLFQGTHLP--YLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAIN  496 (597)
T ss_dssp             HHTCHHHHHHHHHHHHHTTTTCSHH--HHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCccchHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHH
Confidence            3455555555555555555543222  335555555555555555555555555554 5555555555555555555555


Q ss_pred             HHHHHHhc------CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHH
Q 017383          139 DCTEALNL------DDRY-IKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK  188 (372)
Q Consensus       139 ~~~~Al~l------~p~~-~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~  188 (372)
                      .|++++.+      +|+. ..+|..+|.++...|++++|+..|++++.++|++..++
T Consensus       497 ~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~  553 (597)
T 2xpi_A          497 HFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVH  553 (597)
T ss_dssp             HHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHH
T ss_pred             HHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHH
Confidence            55555554      3432 45555555555555555555555555555555554443

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.53  E-value=4.6e-14  Score=142.23  Aligned_cols=133  Identities=20%  Similarity=0.181  Sum_probs=124.5

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHcc------CCC--HHHHHHHHHHHHHhc
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIAL------SPT--AVAYANRAMAYLKLR  131 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~------~p~--~~~~~~la~~~~~~g  131 (372)
                      ..|++++|+..|++++..+|.++.  .+..+|.+|...|++++|+.+|++++++      +|+  ..+|..+|.+|...|
T Consensus       453 ~~g~~~~A~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g  530 (597)
T 2xpi_A          453 QLGNILLANEYLQSSYALFQYDPL--LLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLK  530 (597)
T ss_dssp             HHTCHHHHHHHHHHHHHHCCCCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTT
T ss_pred             HcCCHHHHHHHHHHHHHhCCCChH--HHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhc
Confidence            679999999999999999998554  4779999999999999999999999998      676  789999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHH
Q 017383          132 RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV  194 (372)
Q Consensus       132 ~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a  194 (372)
                      ++++|+..|++++.++|++..+|..+|.+|...|++++|+..|+++++++|++..++..+..+
T Consensus       531 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~  593 (597)
T 2xpi_A          531 MYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRA  593 (597)
T ss_dssp             CHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999988777654

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.53  E-value=6.3e-14  Score=132.90  Aligned_cols=119  Identities=15%  Similarity=0.138  Sum_probs=108.9

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCch-------------HHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPD-------------ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAM  125 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~-------------a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~  125 (372)
                      ..|++++|+..|++++.++|.+..             +.++.++|.+|+..|+|++|+.+|+++++++|+ ..+|+++|.
T Consensus       159 ~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~  238 (336)
T 1p5q_A          159 KEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGE  238 (336)
T ss_dssp             HHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            679999999999999999998631             456889999999999999999999999999998 999999999


Q ss_pred             HHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHH
Q 017383          126 AYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESI-EDSEFAL  178 (372)
Q Consensus       126 ~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~-~~~~~al  178 (372)
                      +|..+|++++|+.+|++|+.++|++..++..+|.++..+|++++|. ..|++++
T Consensus       239 ~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          239 AHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF  292 (336)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999884 3444443

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.52  E-value=1.2e-13  Score=139.71  Aligned_cols=126  Identities=14%  Similarity=0.036  Sum_probs=119.4

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~  138 (372)
                      ..|++++|+..|+++++.+|.+..  ++..+|.+|...|++++|+.+|+++++++|+ ..+++++|.+|..+|++++|+.
T Consensus        35 ~~g~~~~A~~~~~~al~~~p~~~~--~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  112 (568)
T 2vsy_A           35 GMGDTTAGEMAVQRGLALHPGHPE--AVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAA  112 (568)
T ss_dssp             HHTCHHHHHHHHHHHHTTSTTCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            679999999999999999998544  4779999999999999999999999999998 9999999999999999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHccCCCcHHH
Q 017383          139 DCTEALNLDDRYIKAYSRRATARKEL---GKLKESIEDSEFALRLEPQNQEI  187 (372)
Q Consensus       139 ~~~~Al~l~p~~~~a~~~lg~~~~~l---g~~~~A~~~~~~al~l~P~~~~~  187 (372)
                      .|+++++++|++..+++++|.++..+   |++++|...|++++..+|++...
T Consensus       113 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~  164 (568)
T 2vsy_A          113 AYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEP  164 (568)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccCh
Confidence            99999999999999999999999999   99999999999999999986443

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.52  E-value=1.8e-14  Score=136.78  Aligned_cols=114  Identities=30%  Similarity=0.451  Sum_probs=93.0

Q ss_pred             hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-H-----------------HHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 017383           83 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-A-----------------VAYANRAMAYLKLRRFQEAEDDCTEAL  144 (372)
Q Consensus        83 ~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~-----------------~~~~~la~~~~~~g~~~eA~~~~~~Al  144 (372)
                      .+..++.+|+.++..|+|++|+.+|.+++.++|+ .                 .+|+++|.||+.+|+|++|+.+|++++
T Consensus       178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al  257 (338)
T 2if4_A          178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL  257 (338)
T ss_dssp             HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4566889999999999999999999999999998 4                 389999999999999999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHH
Q 017383          145 NLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS  196 (372)
Q Consensus       145 ~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~  196 (372)
                      .++|++..+|+++|.+|..+|++++|+.+|++++.++|++..++..+..+..
T Consensus       258 ~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~  309 (338)
T 2if4_A          258 TEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAE  309 (338)
T ss_dssp             HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999988877766533

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.51  E-value=3.8e-14  Score=112.78  Aligned_cols=93  Identities=15%  Similarity=0.129  Sum_probs=76.1

Q ss_pred             HhhcHHHHHHHHHHHHcc---CCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 017383           96 KQKKFKEAIDCYSRSIAL---SPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESI  171 (372)
Q Consensus        96 ~~g~~~~Ai~~y~~al~~---~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~  171 (372)
                      ..|++++|+.+|++++++   +|+ ..++.++|.+|..+|+|++|+.+|++++.++|+++.+++++|.++..+|++++|+
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            357888888888888888   466 7888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHccCCCcHHHH
Q 017383          172 EDSEFALRLEPQNQEIK  188 (372)
Q Consensus       172 ~~~~~al~l~P~~~~~~  188 (372)
                      ..|++++.+.|+++.+.
T Consensus        82 ~~~~~al~~~p~~~~~~   98 (117)
T 3k9i_A           82 ELLLKIIAETSDDETIQ   98 (117)
T ss_dssp             HHHHHHHHHHCCCHHHH
T ss_pred             HHHHHHHHhCCCcHHHH
Confidence            88888888888887654

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.51  E-value=2.5e-14  Score=142.23  Aligned_cols=130  Identities=15%  Similarity=0.158  Sum_probs=114.7

Q ss_pred             CCCCCCC-CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHh
Q 017383           53 KPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKL  130 (372)
Q Consensus        53 ~~~~~~y-~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~  130 (372)
                      ...|..| ..|++++|+..|+++++.+|.+  +.++.++|.+|+..|+|++|+.+|+++++++|+ +.+++++|.+|..+
T Consensus        10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~   87 (477)
T 1wao_1           10 KTQANDYFKAKDYENAIKFYSQAIELNPSN--AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL   87 (477)
T ss_dssp             SSSSSSTTTTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHhCCcc--HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            3445555 8899999999999999999985  455779999999999999999999999999998 99999999999999


Q ss_pred             cCHHHHHHHHHHHHhcCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHccCCCc
Q 017383          131 RRFQEAEDDCTEALNLDDRYIKAYSRRATA--RKELGKLKESIEDSE-----------FALRLEPQN  184 (372)
Q Consensus       131 g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~--~~~lg~~~~A~~~~~-----------~al~l~P~~  184 (372)
                      |++++|+.+|++|++++|++..++..+|.+  +...|++++|+..++           +++.++|+.
T Consensus        88 g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~  154 (477)
T 1wao_1           88 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY  154 (477)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence            999999999999999999999999999998  888999999999999           888888765

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.51  E-value=2.1e-13  Score=125.91  Aligned_cols=102  Identities=36%  Similarity=0.549  Sum_probs=98.1

Q ss_pred             hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 017383           83 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATAR  161 (372)
Q Consensus        83 ~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~  161 (372)
                      .+..++.+|..++..|+|++|+.+|++++.++|+ ..+++++|.+|..+|++++|+.+|++++.++|++..+++++|.++
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   82 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            4556889999999999999999999999999998 999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHccCCCc
Q 017383          162 KELGKLKESIEDSEFALRLEPQN  184 (372)
Q Consensus       162 ~~lg~~~~A~~~~~~al~l~P~~  184 (372)
                      ..+|++++|+.+|++++.++|++
T Consensus        83 ~~~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           83 LEMESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHcCCHHHHHHHHHHHHHhCccc
Confidence            99999999999999999999976

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.50  E-value=1.7e-13  Score=109.94  Aligned_cols=104  Identities=16%  Similarity=0.126  Sum_probs=96.3

Q ss_pred             CCCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 017383           59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE  137 (372)
Q Consensus        59 y~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~  137 (372)
                      +..|++++|+..|.+++..+|.+..  ++..+|.+++..|+|++|+.+|++++.++|+ ..+++++|.++..+|++++|+
T Consensus        15 ~~~~~~~~A~~~~~~al~~~p~~~~--~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~   92 (126)
T 3upv_A           15 FTKSDWPNAVKAYTEMIKRAPEDAR--GYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASAL   92 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHhCCCChH--HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHH
Confidence            3779999999999999999999554  4779999999999999999999999999999 999999999999999999999


Q ss_pred             HHHHHHHhcC------CCCHHHHHHHHHHHHHc
Q 017383          138 DDCTEALNLD------DRYIKAYSRRATARKEL  164 (372)
Q Consensus       138 ~~~~~Al~l~------p~~~~a~~~lg~~~~~l  164 (372)
                      .+|++++.++      |++..++..++.+...+
T Consensus        93 ~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l  125 (126)
T 3upv_A           93 ETLDAARTKDAEVNNGSSAREIDQLYYKASQQR  125 (126)
T ss_dssp             HHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence            9999999999      99999998888877653

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.49  E-value=2.5e-13  Score=133.65  Aligned_cols=130  Identities=18%  Similarity=0.149  Sum_probs=109.7

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HH------HHHHHHHHHHH---
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AV------AYANRAMAYLK---  129 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~------~~~~la~~~~~---  129 (372)
                      ..|++++|+..|.+++...|.+..+  +..+|.+++..|++++|+.+|++++.++|. ..      ++.++|.++..   
T Consensus       350 ~~~~~~~A~~~~~~~~~~~~~~~~~--~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  427 (514)
T 2gw1_A          350 RENKFDDCETLFSEAKRKFPEAPEV--PNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPT  427 (514)
T ss_dssp             TTTCHHHHHHHHHHHHHHSTTCSHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCC
T ss_pred             HcCCHHHHHHHHHHHHHHcccCHHH--HHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhh
Confidence            6788888888888888888875554  668888888888888888888888888766 33      88888888888   


Q ss_pred             hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHH
Q 017383          130 LRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQL  191 (372)
Q Consensus       130 ~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l  191 (372)
                      .|++++|+..|++++.++|++..+++.+|.++..+|++++|+..|++++.++|++..++..+
T Consensus       428 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  489 (514)
T 2gw1_A          428 VENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI  489 (514)
T ss_dssp             TTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence            88888888888888888888888888888888888999899888888888888888776554

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.49  E-value=3.1e-13  Score=117.88  Aligned_cols=101  Identities=28%  Similarity=0.268  Sum_probs=95.1

Q ss_pred             hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 017383           83 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARK  162 (372)
Q Consensus        83 ~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~  162 (372)
                      ++..++.+|..++..|+|++|+.+|++++  +|++.+++++|.+|..+|++++|+.+|++++.++|+++.+++++|.++.
T Consensus         5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~   82 (213)
T 1hh8_A            5 EAISLWNEGVLAADKKDWKGALDAFSAVQ--DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY   82 (213)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence            45567899999999999999999999996  5678899999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHccCCCcH
Q 017383          163 ELGKLKESIEDSEFALRLEPQNQ  185 (372)
Q Consensus       163 ~lg~~~~A~~~~~~al~l~P~~~  185 (372)
                      .+|++++|+.+|++++.+.|++.
T Consensus        83 ~~~~~~~A~~~~~~al~~~~~~~  105 (213)
T 1hh8_A           83 QTEKYDLAIKDLKEALIQLRGNQ  105 (213)
T ss_dssp             HTTCHHHHHHHHHHHHHTTTTCS
T ss_pred             HcccHHHHHHHHHHHHHhCCCcc
Confidence            99999999999999999888765

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.48  E-value=1.3e-12  Score=103.74  Aligned_cols=109  Identities=33%  Similarity=0.459  Sum_probs=101.5

Q ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 017383           86 SEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKEL  164 (372)
Q Consensus        86 ~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~l  164 (372)
                      +++.+|.+++..|++++|+.+|.+++..+|. ..++..+|.++...|++++|+..+++++..+|.+..+++.+|.++...
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~   82 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ   82 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence            4678999999999999999999999999998 889999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHccCCCcHHHHHHHHHH
Q 017383          165 GKLKESIEDSEFALRLEPQNQEIKKQLAEV  194 (372)
Q Consensus       165 g~~~~A~~~~~~al~l~P~~~~~~~~l~~a  194 (372)
                      |++++|+..|++++.+.|.+..++..+..+
T Consensus        83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~  112 (136)
T 2fo7_A           83 GDYDEAIEYYQKALELDPRSAEAWYNLGNA  112 (136)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            999999999999999999988776554443

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.48  E-value=8.8e-13  Score=122.88  Aligned_cols=137  Identities=9%  Similarity=0.003  Sum_probs=118.1

Q ss_pred             hhhHHHHHhhhh-cCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HH-HHHHHHHHHHHhcCHHHHHHHHH
Q 017383           65 YDPVSHISSSLM-NEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AV-AYANRAMAYLKLRRFQEAEDDCT  141 (372)
Q Consensus        65 ~~A~~~~~~al~-~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~-~~~~la~~~~~~g~~~eA~~~~~  141 (372)
                      ++|+..|++++. ++|++..+  |..+|..+...|++++|+.+|+++++++|. .. +|.++|.++...|++++|+..|+
T Consensus        81 ~~A~~~~~rAl~~~~p~~~~~--~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~  158 (308)
T 2ond_A           81 DEAANIYERAISTLLKKNMLL--YFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK  158 (308)
T ss_dssp             HHHHHHHHHHHTTTTTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            899999999999 79985444  679999999999999999999999999998 65 89999999999999999999999


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHccCCCcHHHHH----------HHHHHHHHHHHHHH
Q 017383          142 EALNLDDRYIKAYSRRATARKE-LGKLKESIEDSEFALRLEPQNQEIKK----------QLAEVKSLYEKEVF  203 (372)
Q Consensus       142 ~Al~l~p~~~~a~~~lg~~~~~-lg~~~~A~~~~~~al~l~P~~~~~~~----------~l~~a~~~~~~~~~  203 (372)
                      +|++++|....+|...+..... .|++++|...|+++++++|++..++.          .+.+|...|++++.
T Consensus       159 ~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~  231 (308)
T 2ond_A          159 KAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT  231 (308)
T ss_dssp             HHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            9999999998888776665443 79999999999999999999988763          34455555665555

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.47  E-value=1.9e-13  Score=115.08  Aligned_cols=99  Identities=8%  Similarity=0.124  Sum_probs=92.9

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~  138 (372)
                      ..|++++|+..|.+++.++|.+.  .++..+|.+|+..|+|++|+.+|++++.++|+ ..+|+++|.+|..+|++++|+.
T Consensus        23 ~~g~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~  100 (164)
T 3sz7_A           23 ARKEYSKAIDLYTQALSIAPANP--IYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKE  100 (164)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCcCH--HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHH
Confidence            77999999999999999999954  45779999999999999999999999999999 9999999999999999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHH
Q 017383          139 DCTEALNLDDRYIKAYSRRATA  160 (372)
Q Consensus       139 ~~~~Al~l~p~~~~a~~~lg~~  160 (372)
                      +|++++.++|++..+|+.++.+
T Consensus       101 ~~~~al~~~p~~~~~~~~~~l~  122 (164)
T 3sz7_A          101 AYEKGIEAEGNGGSDAMKRGLE  122 (164)
T ss_dssp             HHHHHHHHHSSSCCHHHHHHHH
T ss_pred             HHHHHHHhCCCchHHHHHHHHH
Confidence            9999999999999988887753

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.47  E-value=8.8e-14  Score=116.91  Aligned_cols=108  Identities=14%  Similarity=0.086  Sum_probs=95.9

Q ss_pred             CCCCCchhhHHHHHhhhhc------------------CCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHH
Q 017383           59 NSYSRNYDPVSHISSSLMN------------------EESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVA  119 (372)
Q Consensus        59 y~~g~~~~A~~~~~~al~~------------------~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~  119 (372)
                      |..|+|++|+..|.+++..                  +|.  .+.++.++|.+|+..|+|++|+.+|+++|.++|+ +.+
T Consensus        22 ~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a   99 (162)
T 3rkv_A           22 FVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRK--NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKA   99 (162)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHT--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHH--HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHH
Confidence            4789999999999999998                  444  4456889999999999999999999999999999 999


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHcCCHH
Q 017383          120 YANRAMAYLKLRRFQEAEDDCTEALNLDDRYI-KAYSRRATARKELGKLK  168 (372)
Q Consensus       120 ~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~-~a~~~lg~~~~~lg~~~  168 (372)
                      |+++|.+|..+|+|++|+.+|++++.++|++. .+...++.+...++++.
T Consensus       100 ~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~  149 (162)
T 3rkv_A          100 LFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKK  149 (162)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998 66777777776655443

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.47  E-value=4.3e-13  Score=107.23  Aligned_cols=105  Identities=18%  Similarity=0.180  Sum_probs=99.2

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~  138 (372)
                      ..|++++|+..|++++..+|.+  ..++..+|.+++..|++++|+.+|++++.++|. ..++.++|.++..+|++++|+.
T Consensus        28 ~~~~~~~A~~~~~~al~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~  105 (133)
T 2lni_A           28 QKGDYPQAMKHYTEAIKRNPKD--AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMD  105 (133)
T ss_dssp             HTTCSHHHHHHHHHHHTTCTTC--HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHH
Confidence            7799999999999999999985  445779999999999999999999999999998 9999999999999999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 017383          139 DCTEALNLDDRYIKAYSRRATARKELGK  166 (372)
Q Consensus       139 ~~~~Al~l~p~~~~a~~~lg~~~~~lg~  166 (372)
                      +|++++.++|.+..++..+|.++..+|+
T Consensus       106 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A          106 VYQKALDLDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             HHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence            9999999999999999999999998875

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.46  E-value=4.6e-13  Score=106.25  Aligned_cols=106  Identities=19%  Similarity=0.151  Sum_probs=100.2

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~  138 (372)
                      ..|++++|+..|.+++..+|.+  ...+..+|.+++..|++++|+.+|.+++..+|+ ..++.++|.++..+|++++|+.
T Consensus        24 ~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~  101 (131)
T 2vyi_A           24 KVENFEAAVHFYGKAIELNPAN--AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVA  101 (131)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HccCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHH
Confidence            6789999999999999999985  445779999999999999999999999999998 9999999999999999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 017383          139 DCTEALNLDDRYIKAYSRRATARKELGKL  167 (372)
Q Consensus       139 ~~~~Al~l~p~~~~a~~~lg~~~~~lg~~  167 (372)
                      ++++++.++|++..++..+|.++..+|++
T Consensus       102 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A          102 YYKKALELDPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999875

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.46  E-value=1.5e-13  Score=109.29  Aligned_cols=104  Identities=11%  Similarity=0.050  Sum_probs=87.3

Q ss_pred             CCCCchhhHHHHHhhhhc---CCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHH
Q 017383           60 SYSRNYDPVSHISSSLMN---EESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQE  135 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~---~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~e  135 (372)
                      ..|++++|+..|++++..   +|.  ...++..+|.+|+..|+|++|+.+|+++++++|+ ..+++++|.++..+|++++
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~   79 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKD--LAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQ   79 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCcc--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHH
Confidence            358999999999999999   465  4556889999999999999999999999999999 9999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 017383          136 AEDDCTEALNLDDRYIKAYSRRATARKELG  165 (372)
Q Consensus       136 A~~~~~~Al~l~p~~~~a~~~lg~~~~~lg  165 (372)
                      |+..|++++.++|+++........+....+
T Consensus        80 A~~~~~~al~~~p~~~~~~~~~~ai~~~~~  109 (117)
T 3k9i_A           80 GVELLLKIIAETSDDETIQSYKQAILFYAD  109 (117)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHTHHHHHHHTT
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence            999999999999999877654444443333

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.46  E-value=3.6e-13  Score=116.96  Aligned_cols=121  Identities=13%  Similarity=0.095  Sum_probs=104.2

Q ss_pred             CCCCCchhhHHHHHhhhhcCCCCch--------------HHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHH
Q 017383           59 NSYSRNYDPVSHISSSLMNEESTPD--------------ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANR  123 (372)
Q Consensus        59 y~~g~~~~A~~~~~~al~~~p~~~~--------------a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~l  123 (372)
                      +..|+|++|+..|.+++...|..+.              ..++.++|.+|+..|+|++|+.+|++++.++|. ..+++++
T Consensus        49 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  128 (198)
T 2fbn_A           49 FKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKL  128 (198)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence            3789999999999999999887651              256889999999999999999999999999998 9999999


Q ss_pred             HHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHc
Q 017383          124 AMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESI-EDSEFALR  179 (372)
Q Consensus       124 a~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~-~~~~~al~  179 (372)
                      |.+|..+|++++|+.+|++++.++|++..++..++.++..+|++.++. ..|.+.+.
T Consensus       129 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~  185 (198)
T 2fbn_A          129 GVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD  185 (198)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999988887 44444443

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.46  E-value=3.4e-13  Score=121.46  Aligned_cols=135  Identities=25%  Similarity=0.256  Sum_probs=114.6

Q ss_pred             CCCCchhhHHHHHhhhhcC-----CC-CchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccC--------CC-HHHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNE-----ES-TPDATSEKELGNECFKQKKFKEAIDCYSRSIALS--------PT-AVAYANRA  124 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~-----p~-~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~--------p~-~~~~~~la  124 (372)
                      ..|++++|+.+|++++...     ++ ...+.++..+|.+|+..|+|++|+.+|.+++.+.        |. ..++.++|
T Consensus        13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~   92 (283)
T 3edt_B           13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA   92 (283)
T ss_dssp             CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence            6789999999999999842     11 2256678899999999999999999999999873        33 88999999


Q ss_pred             HHHHHhcCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc--------CCCcHHHH
Q 017383          125 MAYLKLRRFQEAEDDCTEALNL--------DDRYIKAYSRRATARKELGKLKESIEDSEFALRL--------EPQNQEIK  188 (372)
Q Consensus       125 ~~~~~~g~~~eA~~~~~~Al~l--------~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l--------~P~~~~~~  188 (372)
                      .+|..+|++++|+.+|++++.+        +|....++.++|.++..+|++++|+..|++++.+        .|....++
T Consensus        93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  172 (283)
T 3edt_B           93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK  172 (283)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            9999999999999999999998        5778899999999999999999999999999998        55555554


Q ss_pred             HHHHHH
Q 017383          189 KQLAEV  194 (372)
Q Consensus       189 ~~l~~a  194 (372)
                      ..++.+
T Consensus       173 ~~la~~  178 (283)
T 3edt_B          173 NNLASC  178 (283)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444433

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.46  E-value=1.3e-13  Score=115.88  Aligned_cols=97  Identities=14%  Similarity=0.156  Sum_probs=87.6

Q ss_pred             CCCCCchhhHHHHHhhhhcCCCCc----------hHHHHHHHHHHHHHhhcHHHHHHHHHHHHcc-------CCC-HHHH
Q 017383           59 NSYSRNYDPVSHISSSLMNEESTP----------DATSEKELGNECFKQKKFKEAIDCYSRSIAL-------SPT-AVAY  120 (372)
Q Consensus        59 y~~g~~~~A~~~~~~al~~~p~~~----------~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~-------~p~-~~~~  120 (372)
                      +..|+|++|+..|+++|+++|.++          .+.+|.++|.++..+|+|++|+.+|+++|++       +|+ ..+|
T Consensus        22 ~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~  101 (159)
T 2hr2_A           22 LVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLW  101 (159)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHH
Confidence            467999999999999999999832          2347889999999999999999999999999       999 8888


Q ss_pred             ----HHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHH
Q 017383          121 ----ANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYS  155 (372)
Q Consensus       121 ----~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~  155 (372)
                          +++|.++..+|++++|+.+|++|++++|++...+-
T Consensus       102 ~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~  140 (159)
T 2hr2_A          102 ISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETP  140 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCT
T ss_pred             HHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence                99999999999999999999999999998854433

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.45  E-value=8.3e-14  Score=132.22  Aligned_cols=128  Identities=12%  Similarity=0.045  Sum_probs=80.3

Q ss_pred             CCCCCchhhHHHHHhhhhcCCCCch---------------HHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHH
Q 017383           59 NSYSRNYDPVSHISSSLMNEESTPD---------------ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYAN  122 (372)
Q Consensus        59 y~~g~~~~A~~~~~~al~~~p~~~~---------------a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~  122 (372)
                      +..|+|++|+..|.+++...|.+..               ..++.++|.+|+..|+|++|+.+|+++++++|+ ..+|++
T Consensus       190 ~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~  269 (338)
T 2if4_A          190 FKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFR  269 (338)
T ss_dssp             CSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            4789999999999999999987431               026889999999999999999999999999998 999999


Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHccCCCcHH
Q 017383          123 RAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATA-RKELGKLKESIEDSEFALRLEPQNQE  186 (372)
Q Consensus       123 la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~-~~~lg~~~~A~~~~~~al~l~P~~~~  186 (372)
                      +|.+|..+|+|++|+.+|++++.++|++..++..++.+ ....+..+++...|.+++.+.|+++.
T Consensus       270 lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~  334 (338)
T 2if4_A          270 RGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGA  334 (338)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHTTC------------------------------------------
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence            99999999999999999999999999999999999988 55667888999999999999998764

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.45  E-value=1.1e-13  Score=137.54  Aligned_cols=123  Identities=35%  Similarity=0.651  Sum_probs=111.7

Q ss_pred             HHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 017383           84 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARK  162 (372)
Q Consensus        84 a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~  162 (372)
                      +..++.+|..++..|+|++|+.+|+++++++|+ +.+|.++|.+|..+|++++|+.+|++|++++|+++.+++++|.++.
T Consensus         6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~   85 (477)
T 1wao_1            6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   85 (477)
T ss_dssp             HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            344667899999999999999999999999998 9999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHhhh
Q 017383          163 ELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKA  206 (372)
Q Consensus       163 ~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~~~~~~~~~~  206 (372)
                      .+|++++|+.+|+++++++|++..++..+..+...+......++
T Consensus        86 ~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A  129 (477)
T 1wao_1           86 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERA  129 (477)
T ss_dssp             HHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999988888877666555444333

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.45  E-value=3.9e-13  Score=132.25  Aligned_cols=123  Identities=13%  Similarity=0.149  Sum_probs=87.6

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~  138 (372)
                      ..|++++|+..|.+++..+|.+..+  +..+|.+++..|++++|+.+|++++.++|. ..++.++|.++...|++++|+.
T Consensus       282 ~~~~~~~A~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  359 (514)
T 2gw1_A          282 DRNDSTEYYNYFDKALKLDSNNSSV--YYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCET  359 (514)
T ss_dssp             TSSCCTTGGGHHHHHHTTCTTCTHH--HHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHH
T ss_pred             HCCCHHHHHHHHHHHhhcCcCCHHH--HHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHH
Confidence            5677777777777777777664444  556777777777777777777777777776 6667777777777777777777


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCc
Q 017383          139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN  184 (372)
Q Consensus       139 ~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~  184 (372)
                      .+++++..+|+++.+++.+|.++..+|++++|+..|++++.+.|++
T Consensus       360 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~  405 (514)
T 2gw1_A          360 LFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKL  405 (514)
T ss_dssp             HHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            7777777777777777777777777777777777777777766665

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.45  E-value=5.4e-13  Score=130.54  Aligned_cols=148  Identities=14%  Similarity=0.073  Sum_probs=120.9

Q ss_pred             CCCCchhhHHHHHhhhhcCC-------CCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCC--------C-HHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEE-------STPDATSEKELGNECFKQKKFKEAIDCYSRSIALSP--------T-AVAYANR  123 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p-------~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p--------~-~~~~~~l  123 (372)
                      .+|++++|+.+|++++++.+       +...+..+.++|.+|+.+|+|++|+.+|++++++.+        . +.++.++
T Consensus        63 ~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~  142 (472)
T 4g1t_A           63 LKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEE  142 (472)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHH
Confidence            78999999999999998521       112455688999999999999999999999998732        2 7889999


Q ss_pred             HHHHHHhc--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHccCCCcHHHHHHH-------
Q 017383          124 AMAYLKLR--RFQEAEDDCTEALNLDDRYIKAYSRRATARKE---LGKLKESIEDSEFALRLEPQNQEIKKQL-------  191 (372)
Q Consensus       124 a~~~~~~g--~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~---lg~~~~A~~~~~~al~l~P~~~~~~~~l-------  191 (372)
                      |.+++..|  +|++|+.+|++|+.++|+++.++..+|.++..   .|++++|+..|++++.++|++..++..+       
T Consensus       143 g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~  222 (472)
T 4g1t_A          143 GWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKM  222 (472)
T ss_dssp             HHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHH
Confidence            98887765  79999999999999999999999999988654   5778899999999999999998775433       


Q ss_pred             -------HHHHHHHHHHHHhhhh
Q 017383          192 -------AEVKSLYEKEVFQKAS  207 (372)
Q Consensus       192 -------~~a~~~~~~~~~~~~~  207 (372)
                             .++...+++++...+.
T Consensus       223 ~~~~~~~~~a~~~~~~al~~~~~  245 (472)
T 4g1t_A          223 REEGEEEGEGEKLVEEALEKAPG  245 (472)
T ss_dssp             C------CHHHHHHHHHHHHCSS
T ss_pred             HhhhhHHHHHHHHHHHHHHhCcc
Confidence                   3555666666555443

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.45  E-value=2.3e-13  Score=134.52  Aligned_cols=114  Identities=15%  Similarity=0.191  Sum_probs=103.1

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCch-------------HHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPD-------------ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAM  125 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~-------------a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~  125 (372)
                      ..|+|++|+..|.+++.++|.+..             +.++.++|.+|++.|+|++|+.+|+++|.++|+ ..+|+++|.
T Consensus       280 ~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~  359 (457)
T 1kt0_A          280 KGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGE  359 (457)
T ss_dssp             HTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             hCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence            789999999999999999988631             566889999999999999999999999999998 999999999


Q ss_pred             HHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 017383          126 AYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIED  173 (372)
Q Consensus       126 ~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~  173 (372)
                      +|+.+|+|++|+.+|++|++++|++..++..++.++..+|++++|...
T Consensus       360 a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~  407 (457)
T 1kt0_A          360 AQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRR  407 (457)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999888654

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.44  E-value=4.5e-13  Score=120.71  Aligned_cols=122  Identities=19%  Similarity=0.167  Sum_probs=110.5

Q ss_pred             CCCCchhhHHHHHhhhhcC-----CC-CchHHHHHHHHHHHHHhhcHHHHHHHHHHHHcc--------CCC-HHHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNE-----ES-TPDATSEKELGNECFKQKKFKEAIDCYSRSIAL--------SPT-AVAYANRA  124 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~-----p~-~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~--------~p~-~~~~~~la  124 (372)
                      ..|++++|+..|.+++...     ++ ...+.++..+|.+|...|++++|+.+|.+++.+        +|. ..++.++|
T Consensus        55 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  134 (283)
T 3edt_B           55 DQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLA  134 (283)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            7899999999999999873     22 235667889999999999999999999999998        355 88999999


Q ss_pred             HHHHHhcCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 017383          125 MAYLKLRRFQEAEDDCTEALNL--------DDRYIKAYSRRATARKELGKLKESIEDSEFALRLE  181 (372)
Q Consensus       125 ~~~~~~g~~~eA~~~~~~Al~l--------~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~  181 (372)
                      .+|..+|++++|+..|++++.+        +|....++..+|.++..+|++++|+..|++++.+.
T Consensus       135 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~  199 (283)
T 3edt_B          135 LLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRA  199 (283)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999        77888999999999999999999999999999873

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.44  E-value=1.1e-12  Score=122.28  Aligned_cols=141  Identities=13%  Similarity=0.074  Sum_probs=121.4

Q ss_pred             hhhHHHHHhhhhcCCCCchHHHHHHHHHHHHH-------hhcH-------HHHHHHHHHHHc-cCCC-HHHHHHHHHHHH
Q 017383           65 YDPVSHISSSLMNEESTPDATSEKELGNECFK-------QKKF-------KEAIDCYSRSIA-LSPT-AVAYANRAMAYL  128 (372)
Q Consensus        65 ~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~-------~g~~-------~~Ai~~y~~al~-~~p~-~~~~~~la~~~~  128 (372)
                      .+|+..|++++..+|.++.+  |+.+|..+..       .|++       ++|+.+|++|+. ++|+ ..+|.++|.++.
T Consensus        33 ~~a~~~~~~al~~~p~~~~~--w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~  110 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDI--WYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE  110 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHH--HHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            68899999999999996666  6688888764       4775       999999999999 7998 889999999999


Q ss_pred             HhcCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHH-----------HHHHHHHH
Q 017383          129 KLRRFQEAEDDCTEALNLDDRYIK-AYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK-----------KQLAEVKS  196 (372)
Q Consensus       129 ~~g~~~eA~~~~~~Al~l~p~~~~-a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~-----------~~l~~a~~  196 (372)
                      ..|++++|+..|++++.++|.+.. +|..+|.++...|++++|...|++++.+.|.+..++           +.+.+|..
T Consensus       111 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~  190 (308)
T 2ond_A          111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFK  190 (308)
T ss_dssp             HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred             hcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence            999999999999999999999987 999999999999999999999999999999876553           23445666


Q ss_pred             HHHHHHHhhhh
Q 017383          197 LYEKEVFQKAS  207 (372)
Q Consensus       197 ~~~~~~~~~~~  207 (372)
                      .|++++...|.
T Consensus       191 ~~~~al~~~p~  201 (308)
T 2ond_A          191 IFELGLKKYGD  201 (308)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHhCCC
Confidence            66666665543

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.44  E-value=3e-13  Score=111.37  Aligned_cols=104  Identities=16%  Similarity=0.033  Sum_probs=92.9

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~  138 (372)
                      ..|++++|+..|.+++..+|.+..+  +..+|.+++..|+|++|+.+|++++.++|+ +.+++++|.+|..+|++++|+.
T Consensus        30 ~~g~~~~A~~~~~~al~~~p~~~~~--~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~  107 (142)
T 2xcb_A           30 QAGKWDDAQKIFQALCMLDHYDARY--FLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAES  107 (142)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHccHHHHHHHHHHHHHhCCccHHH--HHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHH
Confidence            7799999999999999999995555  779999999999999999999999999998 9999999999999999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 017383          139 DCTEALNLDDRYIKAYSRRATARKELG  165 (372)
Q Consensus       139 ~~~~Al~l~p~~~~a~~~lg~~~~~lg  165 (372)
                      +|++++.++|+++.....+..+...++
T Consensus       108 ~~~~al~~~p~~~~~~~~~~~~~~~l~  134 (142)
T 2xcb_A          108 GFYSARALAAAQPAHEALAARAGAMLE  134 (142)
T ss_dssp             HHHHHHHHHHTCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCcchHHHHHHHHHHHH
Confidence            999999999988766655555544443

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.44  E-value=4.1e-13  Score=123.93  Aligned_cols=135  Identities=11%  Similarity=0.052  Sum_probs=113.1

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~  138 (372)
                      ..|++++|+..|.+++..+|.+.  .++.++|.+|+..|+|++|+.+|+++++++|+ ..+++++|.+|..+|++++|+.
T Consensus        16 ~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~   93 (281)
T 2c2l_A           16 VGRKYPEAAACYGRAITRNPLVA--VYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIA   93 (281)
T ss_dssp             HTTCHHHHHHHHHHHHHHCSCCH--HHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCccH--HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            67999999999999999999854  44779999999999999999999999999998 9999999999999999999999


Q ss_pred             HHHHHHhcCCCCH-----HH--------------------------HHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHH
Q 017383          139 DCTEALNLDDRYI-----KA--------------------------YSRRATARKELGKLKESIEDSEFALRLEPQNQEI  187 (372)
Q Consensus       139 ~~~~Al~l~p~~~-----~a--------------------------~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~  187 (372)
                      +|++++.++|++.     .+                          ...++..  ..|++++|+..|++++.++|++...
T Consensus        94 ~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~A~~~~~~al~~~p~~~~~  171 (281)
T 2c2l_A           94 NLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRL--IAAERERELEECQRNHEGHEDDGHI  171 (281)
T ss_dssp             HHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHH--HHHHHHHHHTTTSGGGTTTSCHHHH
T ss_pred             HHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHHHHHHhhhccccchhhh
Confidence            9999999988652     11                          1112222  3688999999999999999998777


Q ss_pred             HHHHHHHHHHH
Q 017383          188 KKQLAEVKSLY  198 (372)
Q Consensus       188 ~~~l~~a~~~~  198 (372)
                      ...+.......
T Consensus       172 ~~~l~~~~~~~  182 (281)
T 2c2l_A          172 RAQQACIEAKH  182 (281)
T ss_dssp             THHHHHHHHHH
T ss_pred             hhHHHHHHHHH
Confidence            66655444333

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.43  E-value=3.8e-13  Score=108.97  Aligned_cols=89  Identities=15%  Similarity=0.108  Sum_probs=82.0

Q ss_pred             CCCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC--------HHHHHHHHHHHHHh
Q 017383           59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT--------AVAYANRAMAYLKL  130 (372)
Q Consensus        59 y~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~--------~~~~~~la~~~~~~  130 (372)
                      |..|+|++|+.+|+++++++|.+..  ++.++|.+|+..|+|++|+.+|+++++++|+        +.+|.++|.++..+
T Consensus        19 ~~~~~~~~A~~~y~~Al~~~p~~~~--~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~   96 (127)
T 4gcn_A           19 YKQKDFEKAHVHYDKAIELDPSNIT--FYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQ   96 (127)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHH--HHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHc
Confidence            4889999999999999999999544  5779999999999999999999999999875        46899999999999


Q ss_pred             cCHHHHHHHHHHHHhcCCC
Q 017383          131 RRFQEAEDDCTEALNLDDR  149 (372)
Q Consensus       131 g~~~eA~~~~~~Al~l~p~  149 (372)
                      |++++|+.+|++++..+|+
T Consensus        97 ~~~~~A~~~~~kal~~~~~  115 (127)
T 4gcn_A           97 NDLSLAVQWFHRSLSEFRD  115 (127)
T ss_dssp             TCHHHHHHHHHHHHHHSCC
T ss_pred             CCHHHHHHHHHHHHhhCcC
Confidence            9999999999999999885

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.43  E-value=4.5e-13  Score=112.41  Aligned_cols=90  Identities=14%  Similarity=0.134  Sum_probs=81.9

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcH----------HHHHHHHHHHHccCCC-HHHHHHHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKF----------KEAIDCYSRSIALSPT-AVAYANRAMAYL  128 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~----------~~Ai~~y~~al~~~p~-~~~~~~la~~~~  128 (372)
                      ..+.|++|+..|+++++++|.+.++  ++++|.++...+++          ++|+.+|++||+++|+ ..+|+++|.+|.
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~~aea--~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~   91 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPLDADN--LTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT   91 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHCCCCHHH--HHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence            3467899999999999999995555  77999999999875          5999999999999999 999999999999


Q ss_pred             Hhc-----------CHHHHHHHHHHHHhcCCCCH
Q 017383          129 KLR-----------RFQEAEDDCTEALNLDDRYI  151 (372)
Q Consensus       129 ~~g-----------~~~eA~~~~~~Al~l~p~~~  151 (372)
                      .+|           ++++|+.+|++|++++|++.
T Consensus        92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~  125 (158)
T 1zu2_A           92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT  125 (158)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence            885           89999999999999999984

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.42  E-value=9.4e-13  Score=121.70  Aligned_cols=121  Identities=16%  Similarity=0.108  Sum_probs=76.5

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCch----HHHHHHHHHHHHHhhcHHHHHHHHHHHHcc------CC-C-HHHHHHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPD----ATSEKELGNECFKQKKFKEAIDCYSRSIAL------SP-T-AVAYANRAMAY  127 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~----a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~------~p-~-~~~~~~la~~~  127 (372)
                      ..|++++|+.+|.+++...+...+    +.++.++|.+|...|+|++|+.+|+++++.      ++ . ..+++++|.+|
T Consensus       127 ~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y  206 (293)
T 3u3w_A          127 KKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKAL  206 (293)
T ss_dssp             TSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence            455677777777777764333222    334666777777777777777777777642      11 1 55667777777


Q ss_pred             HHhcCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcC-CHHHHHHHHHHHHcc
Q 017383          128 LKLRRFQEAEDDCTEALNLDDRY------IKAYSRRATARKELG-KLKESIEDSEFALRL  180 (372)
Q Consensus       128 ~~~g~~~eA~~~~~~Al~l~p~~------~~a~~~lg~~~~~lg-~~~~A~~~~~~al~l  180 (372)
                      ..+|+|++|+.++++|+.+.+..      +.+|+++|.++..+| .+++|+.+|++|+.+
T Consensus       207 ~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i  266 (293)
T 3u3w_A          207 YLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence            77777777777777777664332      566777777777777 357777777666644

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.42  E-value=1.2e-13  Score=128.78  Aligned_cols=130  Identities=11%  Similarity=0.042  Sum_probs=110.2

Q ss_pred             CCCCC-CCCCchhhHHHHHhhhhcCCCCc----hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-------HHHHHH
Q 017383           55 SPSGN-SYSRNYDPVSHISSSLMNEESTP----DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------AVAYAN  122 (372)
Q Consensus        55 ~~~~y-~~g~~~~A~~~~~~al~~~p~~~----~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-------~~~~~~  122 (372)
                      +|..| ..|++++|+.+|++++.+.+...    .+.++.++|.+|.. |+|++|+.+|++++.+.+.       ..++.+
T Consensus        82 lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~  160 (307)
T 2ifu_A           82 AGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGK  160 (307)
T ss_dssp             HHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence            34445 67999999999999998754321    35678899999988 9999999999999998653       578999


Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHH
Q 017383          123 RAMAYLKLRRFQEAEDDCTEALNLDDRY------IKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE  186 (372)
Q Consensus       123 la~~~~~~g~~~eA~~~~~~Al~l~p~~------~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~  186 (372)
                      +|.+|..+|+|++|+.+|++++.+.+.+      ..++..+|.++..+|++++|+.+|++++ ++|.+..
T Consensus       161 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~  229 (307)
T 2ifu_A          161 ASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSG  229 (307)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCC
Confidence            9999999999999999999999986543      4578889999999999999999999999 9997643

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.41  E-value=4.3e-13  Score=111.73  Aligned_cols=105  Identities=12%  Similarity=0.057  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 017383          102 EAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRL  180 (372)
Q Consensus       102 ~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l  180 (372)
                      .+-..|++++.++|+ ..+++++|.+++..|+|++|+..|++++.++|.++.+|+.+|.++..+|++++|+.+|++++.+
T Consensus         5 ~~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l   84 (148)
T 2vgx_A            5 SGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM   84 (148)
T ss_dssp             -CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             chhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            344578999999998 9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcHHHHHH----------HHHHHHHHHHHHHhhh
Q 017383          181 EPQNQEIKKQ----------LAEVKSLYEKEVFQKA  206 (372)
Q Consensus       181 ~P~~~~~~~~----------l~~a~~~~~~~~~~~~  206 (372)
                      +|+++.++..          +.+|...|++++...+
T Consensus        85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  120 (148)
T 2vgx_A           85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA  120 (148)
T ss_dssp             STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred             CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            9999887644          4555556666555544

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.41  E-value=3.2e-13  Score=129.25  Aligned_cols=123  Identities=11%  Similarity=0.122  Sum_probs=89.6

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCc-----hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-------HHHHHHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTP-----DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------AVAYANRAMAY  127 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~-----~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-------~~~~~~la~~~  127 (372)
                      ..|++++|+.++.+++.+.+...     .+.++..+|.+|...|+|++|+.+|.+++.+.+.       +.++.++|.+|
T Consensus       155 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y  234 (383)
T 3ulq_A          155 YMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCK  234 (383)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence            66777788888877777644332     2445677777787888888888888887776432       45777788888


Q ss_pred             HHhcCHHHHHHHHHHHHh-----cC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 017383          128 LKLRRFQEAEDDCTEALN-----LD-DRYIKAYSRRATARKELGKLKESIEDSEFALRLEP  182 (372)
Q Consensus       128 ~~~g~~~eA~~~~~~Al~-----l~-p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P  182 (372)
                      ..+|++++|+.++++|+.     .+ |..+.+++++|.++..+|++++|+.+|++++.+.+
T Consensus       235 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  295 (383)
T 3ulq_A          235 NSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ  295 (383)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            888888888888888777     45 66677777788888888888888888887777643

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.41  E-value=1.3e-13  Score=107.33  Aligned_cols=94  Identities=30%  Similarity=0.506  Sum_probs=86.9

Q ss_pred             hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------HHHHH
Q 017383           83 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY------IKAYS  155 (372)
Q Consensus        83 ~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~------~~a~~  155 (372)
                      .+..++.+|.+++..|+|++|+.+|++++.++|+ +.+++++|.++..+|++++|+.+|++++.++|++      ..+++
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            4556889999999999999999999999999998 9999999999999999999999999999999999      99999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHH
Q 017383          156 RRATARKELGKLKESIEDSEF  176 (372)
Q Consensus       156 ~lg~~~~~lg~~~~A~~~~~~  176 (372)
                      ++|.++..+|+++.|+..|++
T Consensus        83 ~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           83 RLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHHHHHhHhhhHhHHHH
Confidence            999999999998888776654

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.40  E-value=1.1e-12  Score=125.45  Aligned_cols=134  Identities=8%  Similarity=0.088  Sum_probs=113.4

Q ss_pred             CCCCchhhHHHHHhhhhcC---CCC-chHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC--------HHHHHHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNE---EST-PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT--------AVAYANRAMAY  127 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~---p~~-~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~--------~~~~~~la~~~  127 (372)
                      ..|++++|+..|.+++.+.   ++. ..+.++..+|.+|+..|++++|+.+|.+++++.+.        +.++.++|.+|
T Consensus       115 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~  194 (383)
T 3ulq_A          115 DQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNF  194 (383)
T ss_dssp             HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHH
Confidence            7799999999999999872   222 25677899999999999999999999999998432        67899999999


Q ss_pred             HHhcCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHcc-----C-CCcHHHHHHHHH
Q 017383          128 LKLRRFQEAEDDCTEALNLDDRY------IKAYSRRATARKELGKLKESIEDSEFALRL-----E-PQNQEIKKQLAE  193 (372)
Q Consensus       128 ~~~g~~~eA~~~~~~Al~l~p~~------~~a~~~lg~~~~~lg~~~~A~~~~~~al~l-----~-P~~~~~~~~l~~  193 (372)
                      ..+|++++|+.+|++|+.+.+..      ..+++++|.++..+|++++|+.+|++++.+     + |....++..++.
T Consensus       195 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~  272 (383)
T 3ulq_A          195 LDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQ  272 (383)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Confidence            99999999999999999985543      468999999999999999999999999994     5 665555444433

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.39  E-value=5.9e-13  Score=127.42  Aligned_cols=128  Identities=16%  Similarity=0.087  Sum_probs=96.0

Q ss_pred             CCCCC-CCCCchhhHHHHHhhhhcCCCCc-----hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCC---C----HHHHH
Q 017383           55 SPSGN-SYSRNYDPVSHISSSLMNEESTP-----DATSEKELGNECFKQKKFKEAIDCYSRSIALSP---T----AVAYA  121 (372)
Q Consensus        55 ~~~~y-~~g~~~~A~~~~~~al~~~p~~~-----~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p---~----~~~~~  121 (372)
                      +|..| ..|+++.|+.++.+++.+.+...     .+.++..+|.+|...|+|++|+.+|.+++.+.+   +    +.++.
T Consensus       147 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  226 (378)
T 3q15_A          147 VAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLL  226 (378)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            33344 67788888888888887554322     345677888888888888888888888887632   1    56778


Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 017383          122 NRAMAYLKLRRFQEAEDDCTEALN-----LDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEP  182 (372)
Q Consensus       122 ~la~~~~~~g~~~eA~~~~~~Al~-----l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P  182 (372)
                      ++|.+|..+|++++|+.++++++.     .+|....+++++|.++..+|++++|+.+|++++.+.+
T Consensus       227 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  292 (378)
T 3q15_A          227 NIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHIT  292 (378)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            888888888888888888888888     6777777888888888888888888888888887754

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.39  E-value=1e-12  Score=105.50  Aligned_cols=91  Identities=15%  Similarity=0.060  Sum_probs=80.3

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~  138 (372)
                      ..|++++|+..|++++..+|.+..+  ++.+|.++...|++++|+.+|+++++++|+ ..+++++|.+|..+|++++|+.
T Consensus        29 ~~g~~~~A~~~~~~al~~~P~~~~a--~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~  106 (121)
T 1hxi_A           29 KLANLAEAALAFEAVCQKEPEREEA--WRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALA  106 (121)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            6799999999999999999996555  679999999999999999999999999998 9999999999999999999999


Q ss_pred             HHHHHHhcCCCCHH
Q 017383          139 DCTEALNLDDRYIK  152 (372)
Q Consensus       139 ~~~~Al~l~p~~~~  152 (372)
                      .|+++++++|++..
T Consensus       107 ~~~~al~~~P~~~~  120 (121)
T 1hxi_A          107 SLRAWLLSQPQYEQ  120 (121)
T ss_dssp             HHHHHHC-------
T ss_pred             HHHHHHHhCcCCCC
Confidence            99999999998754

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.39  E-value=2.5e-12  Score=125.77  Aligned_cols=125  Identities=11%  Similarity=0.050  Sum_probs=94.6

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHh--------
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKL--------  130 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~--------  130 (372)
                      ..|++++|+..|++++..+|....+  +..+|.+|...|++++|+.+|.++++.+|+ +.++.++|.+|...        
T Consensus       225 ~~~~~~~a~~~~~~al~~~~~~~~~--~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~  302 (472)
T 4g1t_A          225 EGEEEGEGEKLVEEALEKAPGVTDV--LRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLR  302 (472)
T ss_dssp             -----CHHHHHHHHHHHHCSSCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             hhhHHHHHHHHHHHHHHhCccHHHH--HHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHH
Confidence            3467777888888888877774444  567888888888888888888888888887 77888888877543        


Q ss_pred             -----------cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHH
Q 017383          131 -----------RRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE  186 (372)
Q Consensus       131 -----------g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~  186 (372)
                                 +.+++|+..+++++.++|.+..+++.+|.++..+|++++|+.+|++++.++|++..
T Consensus       303 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~  369 (472)
T 4g1t_A          303 ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVA  369 (472)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChH
Confidence                       34667888888888888888888888888888888888888888888888877644

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.38  E-value=1.8e-12  Score=118.65  Aligned_cols=122  Identities=20%  Similarity=0.205  Sum_probs=109.5

Q ss_pred             CCCCchhhHHHHHhhhhcC------CCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccC--------CC-HHHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNE------ESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALS--------PT-AVAYANRA  124 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~------p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~--------p~-~~~~~~la  124 (372)
                      ..|++++|+..|.+++...      .....+.++..+|.+++..|++++|+.+|++++.+.        |. ..++.++|
T Consensus        81 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la  160 (311)
T 3nf1_A           81 DQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLA  160 (311)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence            7899999999999999873      222356678899999999999999999999999874        33 78899999


Q ss_pred             HHHHHhcCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 017383          125 MAYLKLRRFQEAEDDCTEALNL--------DDRYIKAYSRRATARKELGKLKESIEDSEFALRLE  181 (372)
Q Consensus       125 ~~~~~~g~~~eA~~~~~~Al~l--------~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~  181 (372)
                      .++..+|++++|+.++++++.+        +|....+++.+|.++..+|++++|+..|++++.+.
T Consensus       161 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  225 (311)
T 3nf1_A          161 LLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA  225 (311)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999998        77788999999999999999999999999999864

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.38  E-value=4.3e-13  Score=114.43  Aligned_cols=152  Identities=12%  Similarity=-0.007  Sum_probs=118.2

Q ss_pred             HhhHHHHHHHHHHHHHHhhhcCCCCCccccccccccCCCCCCCC-CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHH
Q 017383           16 LNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNEC   94 (372)
Q Consensus        16 ~~~l~~~e~~ik~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~   94 (372)
                      +-..++|++++......+...+....-         ....|..| ..|++++|+..|++++..+| ++..  +...|.+.
T Consensus        16 ~~~~g~~~~A~~~~~~al~~~P~~~~a---------~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~--~~~~~~~~   83 (176)
T 2r5s_A           16 LLQQGEHAQALNVIQTLSDELQSRGDV---------KLAKADCLLETKQFELAQELLATIPLEYQ-DNSY--KSLIAKLE   83 (176)
T ss_dssp             HHHTTCHHHHHHHHHTSCHHHHTSHHH---------HHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHH--HHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHCCCcHHH---------HHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHH--HHHHHHHH
Confidence            334467777777776665544411100         01122233 78999999999999999998 5544  33445443


Q ss_pred             -HHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCHHHH
Q 017383           95 -FKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY--IKAYSRRATARKELGKLKES  170 (372)
Q Consensus        95 -~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~--~~a~~~lg~~~~~lg~~~~A  170 (372)
                       ...++..+|+.+|+++++++|+ ..+++++|.++..+|++++|+..|+++++++|++  ..++.++|.++..+|+.++|
T Consensus        84 ~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A  163 (176)
T 2r5s_A           84 LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI  163 (176)
T ss_dssp             HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred             HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence             3344556689999999999998 9999999999999999999999999999999986  66999999999999999999


Q ss_pred             HHHHHHHHc
Q 017383          171 IEDSEFALR  179 (372)
Q Consensus       171 ~~~~~~al~  179 (372)
                      +..|+++|.
T Consensus       164 ~~~y~~al~  172 (176)
T 2r5s_A          164 ASKYRRQLY  172 (176)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999874

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.37  E-value=7.5e-12  Score=97.38  Aligned_cols=100  Identities=17%  Similarity=0.185  Sum_probs=93.9

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~  138 (372)
                      ..|++++|+..|++++..+|.+..  .+..+|.+++..|+|++|+.+|++++..+|. ..++.++|.++..+|++++|+.
T Consensus        16 ~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~   93 (118)
T 1elw_A           16 SVGNIDDALQCYSEAIKLDPHNHV--LYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKR   93 (118)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HcccHHHHHHHHHHHHHHCCCcHH--HHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHH
Confidence            678999999999999999998544  4779999999999999999999999999998 9999999999999999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHH
Q 017383          139 DCTEALNLDDRYIKAYSRRATAR  161 (372)
Q Consensus       139 ~~~~Al~l~p~~~~a~~~lg~~~  161 (372)
                      .+++++.++|++..++..++.+.
T Consensus        94 ~~~~~~~~~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           94 TYEEGLKHEANNPQLKEGLQNME  116 (118)
T ss_dssp             HHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHhh
Confidence            99999999999999999988765

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.37  E-value=3.4e-13  Score=125.77  Aligned_cols=128  Identities=8%  Similarity=-0.014  Sum_probs=110.8

Q ss_pred             CCCC-CCCCchhhHHHHHhhhhcCCCCc----hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-------HHHHHHH
Q 017383           56 PSGN-SYSRNYDPVSHISSSLMNEESTP----DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------AVAYANR  123 (372)
Q Consensus        56 ~~~y-~~g~~~~A~~~~~~al~~~p~~~----~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-------~~~~~~l  123 (372)
                      |..| ..|++++|+..|.+++.+.+...    .+..+.++|.+|...|+|++|+.+|++++++.+.       +.++.++
T Consensus        43 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l  122 (307)
T 2ifu_A           43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRA  122 (307)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3344 67999999999999998765432    3557889999999999999999999999998532       6789999


Q ss_pred             HHHHHHhcCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCc
Q 017383          124 AMAYLKLRRFQEAEDDCTEALNLDDRY------IKAYSRRATARKELGKLKESIEDSEFALRLEPQN  184 (372)
Q Consensus       124 a~~~~~~g~~~eA~~~~~~Al~l~p~~------~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~  184 (372)
                      |.+|.. |++++|+.+|++|+.+.+..      ..++.++|.++..+|++++|+.+|++++.+.|.+
T Consensus       123 g~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  188 (307)
T 2ifu_A          123 GKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM  188 (307)
T ss_dssp             HHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence            999999 99999999999999997654      6789999999999999999999999999987643

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.37  E-value=8.2e-12  Score=98.05  Aligned_cols=104  Identities=26%  Similarity=0.382  Sum_probs=97.2

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~  138 (372)
                      ..|++++|+..|.+++...|...  ..+..+|.+++..|++++|+.+|++++..+|. ..++.++|.++...|++++|+.
T Consensus        21 ~~~~~~~A~~~~~~~~~~~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~   98 (125)
T 1na0_A           21 KQGDYDEAIEYYQKALELDPNNA--EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE   98 (125)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHCcCcH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHH
Confidence            67899999999999999998854  45779999999999999999999999999998 8999999999999999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 017383          139 DCTEALNLDDRYIKAYSRRATARKELG  165 (372)
Q Consensus       139 ~~~~Al~l~p~~~~a~~~lg~~~~~lg  165 (372)
                      .+++++.++|++..++..+|.++...|
T Consensus        99 ~~~~~~~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           99 YYQKALELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence            999999999999999999999988765

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.37  E-value=1e-11  Score=97.84  Aligned_cols=98  Identities=15%  Similarity=0.145  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 017383          101 KEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALR  179 (372)
Q Consensus       101 ~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~  179 (372)
                      +.|+.+|+++++.+|+ ..+++++|.+|...|++++|+.+|++++.++|++..+|+.+|.++..+|++++|+..|++++.
T Consensus         2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   81 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA   81 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3578899999999998 899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCc--HHHHHHHHHHHHHH
Q 017383          180 LEPQN--QEIKKQLAEVKSLY  198 (372)
Q Consensus       180 l~P~~--~~~~~~l~~a~~~~  198 (372)
                      +.|.+  ......+......+
T Consensus        82 ~~~~~~~~~~~~~l~~~l~~l  102 (115)
T 2kat_A           82 AAQSRGDQQVVKELQVFLRRL  102 (115)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHH
T ss_pred             hccccccHHHHHHHHHHHHHh
Confidence            98853  34444444444333

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.36  E-value=3.7e-12  Score=117.66  Aligned_cols=124  Identities=15%  Similarity=0.084  Sum_probs=106.8

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCch----HHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-------HHHHHHHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPD----ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------AVAYANRAMAYL  128 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~----a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-------~~~~~~la~~~~  128 (372)
                      ..|+|++|+..+++++...+..+.    ...++.+|.++...|+|++|+.+|++++.+.+.       ..++.++|.+|.
T Consensus        87 ~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~  166 (293)
T 3u3w_A           87 KQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYA  166 (293)
T ss_dssp             HTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Confidence            679999999999999998776655    334556899999999999999999999996543       457999999999


Q ss_pred             HhcCHHHHHHHHHHHHhc-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 017383          129 KLRRFQEAEDDCTEALNL-------DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQ  183 (372)
Q Consensus       129 ~~g~~~eA~~~~~~Al~l-------~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~  183 (372)
                      .+|+|++|+.+|++|+..       .+....+++++|.+|..+|++++|+.++++++.+.+.
T Consensus       167 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~  228 (293)
T 3u3w_A          167 ENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR  228 (293)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            999999999999999953       2334678999999999999999999999999988754

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.36  E-value=9.3e-12  Score=116.41  Aligned_cols=121  Identities=8%  Similarity=-0.088  Sum_probs=67.4

Q ss_pred             hhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhh--cHHHHHHHHHHHHccCCC-HHHHHHHHHHH----HHh---cCHHH
Q 017383           66 DPVSHISSSLMNEESTPDATSEKELGNECFKQK--KFKEAIDCYSRSIALSPT-AVAYANRAMAY----LKL---RRFQE  135 (372)
Q Consensus        66 ~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g--~~~~Ai~~y~~al~~~p~-~~~~~~la~~~----~~~---g~~~e  135 (372)
                      +|+..+.++|.++|.+..+  ++.+|.++...|  ++++++.++..+|..+|. ..+|+.|+.++    ..+   +++++
T Consensus        51 ~aL~~t~~~L~~nP~~~ta--Wn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~  128 (306)
T 3dra_A           51 RALHITELGINELASHYTI--WIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYR  128 (306)
T ss_dssp             HHHHHHHHHHHHCTTCHHH--HHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred             HHHHHHHHHHHHCcHHHHH--HHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHH
Confidence            4555555555555553333  445555555555  555555555555555555 55555555555    444   45555


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHccCCCcHHHH
Q 017383          136 AEDDCTEALNLDDRYIKAYSRRATARKELGKLK--ESIEDSEFALRLEPQNQEIK  188 (372)
Q Consensus       136 A~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~--~A~~~~~~al~l~P~~~~~~  188 (372)
                      ++.+|.+++..+|.+..+|+.++.++..+|.++  +++..+.+++.++|.|..++
T Consensus       129 EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW  183 (306)
T 3dra_A          129 EFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAW  183 (306)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHH
Confidence            555555555555555555555555555555555  55555555555555555554

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.36  E-value=1.9e-12  Score=124.43  Aligned_cols=112  Identities=13%  Similarity=0.170  Sum_probs=104.1

Q ss_pred             CCCCchhhHHHHHhhhh----------------cCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHH
Q 017383           60 SYSRNYDPVSHISSSLM----------------NEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYAN  122 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~----------------~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~  122 (372)
                      ..|+|++|+..|+++++                .+|.  .+.++.++|.+|+..|+|++|+.+|+++++++|+ +.+|++
T Consensus       235 ~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~--~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~  312 (370)
T 1ihg_A          235 KSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPV--ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYR  312 (370)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHH--HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHH
Confidence            77999999999999998                5554  4566889999999999999999999999999998 999999


Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 017383          123 RAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIED  173 (372)
Q Consensus       123 la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~  173 (372)
                      +|.+|..+|++++|+.+|++|++++|++..++..++.++..+++++++...
T Consensus       313 lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          313 RAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA  363 (370)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999888654

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.36  E-value=4e-12  Score=117.40  Aligned_cols=122  Identities=14%  Similarity=0.078  Sum_probs=87.1

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCc----hHHHHHHHHHHHHHhhcHHHHHHHHHHHHc---cCCC-----HHHHHHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTP----DATSEKELGNECFKQKKFKEAIDCYSRSIA---LSPT-----AVAYANRAMAY  127 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~----~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~---~~p~-----~~~~~~la~~~  127 (372)
                      ..|++++|+.+|.+++...+...    .+.+++.+|.+|+..|+|++|+.+|++++.   ..|+     ..+++++|.+|
T Consensus       127 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y  206 (293)
T 2qfc_A          127 KKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKAL  206 (293)
T ss_dssp             TSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHH
Confidence            55778888888888876543321    244677788888888888888888888873   3333     25777888888


Q ss_pred             HHhcCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHHH-HHHHHHHHccC
Q 017383          128 LKLRRFQEAEDDCTEALNLDDR------YIKAYSRRATARKELGKLKES-IEDSEFALRLE  181 (372)
Q Consensus       128 ~~~g~~~eA~~~~~~Al~l~p~------~~~a~~~lg~~~~~lg~~~~A-~~~~~~al~l~  181 (372)
                      ..+|+|++|+.++++++.+.+.      ...+++++|.++..+|++++| ..+|++++.+.
T Consensus       207 ~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~  267 (293)
T 2qfc_A          207 YLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence            8888888888888888776532      266777888888888888888 66677777553

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.36  E-value=1.4e-12  Score=120.55  Aligned_cols=151  Identities=12%  Similarity=0.013  Sum_probs=126.0

Q ss_pred             hHHHHHHHHHHHHHHhhhcCCCCCccccccccccCCCCCCCC-CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHH
Q 017383           18 DLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFK   96 (372)
Q Consensus        18 ~l~~~e~~ik~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~   96 (372)
                      ...++++++......+...+....-         ...+|..| ..|++++|+..|++++..+|+  ........+..+..
T Consensus       129 ~~g~~~~A~~~~~~al~~~P~~~~a---------~~~la~~~~~~g~~~~A~~~l~~~~~~~p~--~~~~~~~~~~~l~~  197 (287)
T 3qou_A          129 QESNYTDALPLLXDAWQLSNQNGEI---------GLLLAETLIALNRSEDAEAVLXTIPLQDQD--TRYQGLVAQIELLX  197 (287)
T ss_dssp             HTTCHHHHHHHHHHHHHHTTSCHHH---------HHHHHHHHHHTTCHHHHHHHHTTSCGGGCS--HHHHHHHHHHHHHH
T ss_pred             hCCCHHHHHHHHHHHHHhCCcchhH---------HHHHHHHHHHCCCHHHHHHHHHhCchhhcc--hHHHHHHHHHHHHh
Confidence            3456777777777766655511110         01122234 789999999999999999996  33445677888999


Q ss_pred             hhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCHHHHHHH
Q 017383           97 QKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY--IKAYSRRATARKELGKLKESIED  173 (372)
Q Consensus        97 ~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~--~~a~~~lg~~~~~lg~~~~A~~~  173 (372)
                      .+++++|+..|++++..+|+ ..+++++|.+|...|++++|+..|.++++++|++  ..++.++|.++..+|+.++|...
T Consensus       198 ~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~  277 (287)
T 3qou_A          198 QAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASX  277 (287)
T ss_dssp             HHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             hcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHH
Confidence            99999999999999999999 9999999999999999999999999999999999  89999999999999999999999


Q ss_pred             HHHHHc
Q 017383          174 SEFALR  179 (372)
Q Consensus       174 ~~~al~  179 (372)
                      |++++.
T Consensus       278 ~r~al~  283 (287)
T 3qou_A          278 YRRQLY  283 (287)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999875

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.35  E-value=1.2e-11  Score=125.47  Aligned_cols=129  Identities=10%  Similarity=0.075  Sum_probs=118.7

Q ss_pred             chhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhc----------HHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhc-
Q 017383           64 NYDPVSHISSSLMNEESTPDATSEKELGNECFKQKK----------FKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR-  131 (372)
Q Consensus        64 ~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~----------~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g-  131 (372)
                      .++|+..+.+++..+|++..+  |+.+|.++...|+          |++|+.+|+++++.+|+ ..+|+.|+.++..+| 
T Consensus        45 ~eeal~~~~~~l~~nP~~~ta--W~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~  122 (567)
T 1dce_A           45 DESVLELTSQILGANPDFATL--WNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE  122 (567)
T ss_dssp             SHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSS
T ss_pred             CHHHHHHHHHHHHHCchhHHH--HHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc
Confidence            357899999999999996655  7788999999998          99999999999999999 999999999999999 


Q ss_pred             -CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHccCCCcHHHHHHHHHH
Q 017383          132 -RFQEAEDDCTEALNLDDRYIKAYSRRATARKELG-KLKESIEDSEFALRLEPQNQEIKKQLAEV  194 (372)
Q Consensus       132 -~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg-~~~~A~~~~~~al~l~P~~~~~~~~l~~a  194 (372)
                       ++++|+.+|.++++++|.+..+|+.+|.++..+| .++++++++.++++++|.|..+|.....+
T Consensus       123 ~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~l  187 (567)
T 1dce_A          123 PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCL  187 (567)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHH
Confidence             7799999999999999999999999999999999 99999999999999999999886443333

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.35  E-value=7.7e-12  Score=115.03  Aligned_cols=127  Identities=15%  Similarity=0.093  Sum_probs=112.9

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC---HHHHHHHHHHHHHhcCHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT---AVAYANRAMAYLKLRRFQEA  136 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~---~~~~~~la~~~~~~g~~~eA  136 (372)
                      ..|+|++|...|...+...|..  . ..+.+|.+++..|+|++|+.+|+.++...+.   ..+++++|.++..+|++++|
T Consensus       114 ~~g~y~eA~~~l~~~~~~~p~~--~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eA  190 (282)
T 4f3v_A          114 AQGNYADAMEALEAAPVAGSEH--L-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEA  190 (282)
T ss_dssp             HHTCHHHHHHHHTSSCCTTCHH--H-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HCCCHHHHHHHHHHHHhcCCch--H-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHH
Confidence            5799999999999999998874  3 6789999999999999999999988876432   56899999999999999999


Q ss_pred             HHHHHHHHhcC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHH
Q 017383          137 EDDCTEALNLD--DR-YIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQ  190 (372)
Q Consensus       137 ~~~~~~Al~l~--p~-~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~  190 (372)
                      +.+|++++...  |. ...+++++|.++..+|+.++|...|++++..+|+ ..+...
T Consensus       191 l~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~a  246 (282)
T 4f3v_A          191 ERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAA  246 (282)
T ss_dssp             HHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHH
T ss_pred             HHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHH
Confidence            99999999655  66 6789999999999999999999999999999998 665543

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.35  E-value=7.8e-12  Score=101.85  Aligned_cols=104  Identities=14%  Similarity=0.092  Sum_probs=95.1

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCc-hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTP-DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE  137 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~-~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~  137 (372)
                      ..|++++|+..|++++..+|... ....+..+|.+|+..|+|++|+.+|++++.++|. ..+++++|.++..+|++++|+
T Consensus        40 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~  119 (148)
T 2dba_A           40 KCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAV  119 (148)
T ss_dssp             TTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHH
Confidence            78999999999999999998741 1556889999999999999999999999999998 999999999999999999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHH
Q 017383          138 DDCTEALNLDDRYIKAYSRRATARKE  163 (372)
Q Consensus       138 ~~~~~Al~l~p~~~~a~~~lg~~~~~  163 (372)
                      .+|++++.++|++..++..++.+...
T Consensus       120 ~~~~~al~~~p~~~~~~~~l~~~~~~  145 (148)
T 2dba_A          120 LDLQRCVSLEPKNKVFQEALRNISGP  145 (148)
T ss_dssp             HHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred             HHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence            99999999999999999888876543

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.34  E-value=3.5e-12  Score=116.79  Aligned_cols=119  Identities=26%  Similarity=0.258  Sum_probs=107.9

Q ss_pred             CCCCchhhHHHHHhhhhc--------CCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccC--------CC-HHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMN--------EESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALS--------PT-AVAYAN  122 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~--------~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~--------p~-~~~~~~  122 (372)
                      ..|++++|+..|++++.+        .|.  .+.++..+|.+|+..|++++|+.+|.+++.+.        |. ..++.+
T Consensus        39 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  116 (311)
T 3nf1_A           39 SQGRYEVAVPLCKQALEDLEKTSGHDHPD--VATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNN  116 (311)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHCSSSHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHHHcCCCCHH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            779999999999999985        333  56668899999999999999999999999873        33 888999


Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 017383          123 RAMAYLKLRRFQEAEDDCTEALNLD--------DRYIKAYSRRATARKELGKLKESIEDSEFALRL  180 (372)
Q Consensus       123 la~~~~~~g~~~eA~~~~~~Al~l~--------p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l  180 (372)
                      +|.+|..+|++++|+..+++++.+.        |....++..+|.++...|++++|+.+|++++.+
T Consensus       117 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~  182 (311)
T 3nf1_A          117 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI  182 (311)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999884        667888999999999999999999999999998

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.34  E-value=2.2e-11  Score=113.82  Aligned_cols=138  Identities=11%  Similarity=0.040  Sum_probs=126.9

Q ss_pred             CCC--CchhhHHHHHhhhhcCCCCchHHHHHHHHHHH----HHh---hcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHH
Q 017383           60 SYS--RNYDPVSHISSSLMNEESTPDATSEKELGNEC----FKQ---KKFKEAIDCYSRSIALSPT-AVAYANRAMAYLK  129 (372)
Q Consensus        60 ~~g--~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~----~~~---g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~  129 (372)
                      .+|  ++++++.++..++..+|++..+  |+.++.++    ...   +++++++.++.++++.+|. ..+|..++.++..
T Consensus        79 ~l~~~~~~eeL~~~~~~L~~nPk~y~a--W~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~  156 (306)
T 3dra_A           79 NLPNRNLYDELDWCEEIALDNEKNYQI--WNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDT  156 (306)
T ss_dssp             TCTTSCHHHHHHHHHHHHHHCTTCCHH--HHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HcccccHHHHHHHHHHHHHHCcccHHH--HHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            567  9999999999999999997777  55778888    666   7999999999999999998 9999999999999


Q ss_pred             hcCHH--HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHH
Q 017383          130 LRRFQ--EAEDDCTEALNLDDRYIKAYSRRATARKELGK------LKESIEDSEFALRLEPQNQEIKKQLAEVKSLYE  199 (372)
Q Consensus       130 ~g~~~--eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~------~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~~~  199 (372)
                      +|.++  +++.++.+++..+|.+..+|+.++.++..+|+      ++++++++.+++.++|+|..++..+.-+....+
T Consensus       157 l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~  234 (306)
T 3dra_A          157 FDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFD  234 (306)
T ss_dssp             TTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTT
T ss_pred             hcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcC
Confidence            99999  99999999999999999999999999999998      999999999999999999999988877665443

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.34  E-value=3.5e-12  Score=103.09  Aligned_cols=104  Identities=13%  Similarity=0.026  Sum_probs=93.2

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~  138 (372)
                      ..|++++|+..|.+++..+|.+..  ++..+|.+++..|+|++|+.+|++++.++|+ ..+++++|.++..+|++++|+.
T Consensus        21 ~~~~~~~A~~~~~~al~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~   98 (137)
T 3q49_B           21 VGRKYPEAAACYGRAITRNPLVAV--YYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIA   98 (137)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HhCcHHHHHHHHHHHHhhCcCcHH--HHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHH
Confidence            779999999999999999998554  4779999999999999999999999999998 9999999999999999999999


Q ss_pred             HHHHHHhcCCC-----CHHHHHHHHHHHHHcC
Q 017383          139 DCTEALNLDDR-----YIKAYSRRATARKELG  165 (372)
Q Consensus       139 ~~~~Al~l~p~-----~~~a~~~lg~~~~~lg  165 (372)
                      +|++++.++|+     +..+...+..+.....
T Consensus        99 ~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~  130 (137)
T 3q49_B           99 NLQRAYSLAKEQRLNFGDDIPSALRIAKKKRW  130 (137)
T ss_dssp             HHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHChhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999988     6666666666555443

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.34  E-value=5.9e-12  Score=120.41  Aligned_cols=135  Identities=10%  Similarity=0.028  Sum_probs=114.0

Q ss_pred             CCCCchhhHHHHHhhhhcCCCC----chHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC--------HHHHHHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEEST----PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT--------AVAYANRAMAY  127 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~----~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~--------~~~~~~la~~~  127 (372)
                      ..|++++|+.+|.+++.+.+..    ..+.++..+|.+|+..|+++.|+.+|.+++++.+.        +.++.++|.+|
T Consensus       113 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y  192 (378)
T 3q15_A          113 DQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNY  192 (378)
T ss_dssp             HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHH
T ss_pred             HHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHH
Confidence            6799999999999999875322    24667899999999999999999999999987432        67889999999


Q ss_pred             HHhcCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-----cCCCcHHHHHHHHHH
Q 017383          128 LKLRRFQEAEDDCTEALNLDD------RYIKAYSRRATARKELGKLKESIEDSEFALR-----LEPQNQEIKKQLAEV  194 (372)
Q Consensus       128 ~~~g~~~eA~~~~~~Al~l~p------~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~-----l~P~~~~~~~~l~~a  194 (372)
                      ..+|++++|+..|.+|+.+.+      ....+++++|.++..+|++++|+.+|++++.     .+|....+...++.+
T Consensus       193 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~  270 (378)
T 3q15_A          193 DDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWT  270 (378)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHH
Confidence            999999999999999999743      2357899999999999999999999999999     667665555444443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.33  E-value=4.9e-12  Score=128.27  Aligned_cols=129  Identities=9%  Similarity=-0.003  Sum_probs=119.8

Q ss_pred             chhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhh--cHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhc-CHHHHHHH
Q 017383           64 NYDPVSHISSSLMNEESTPDATSEKELGNECFKQK--KFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR-RFQEAEDD  139 (372)
Q Consensus        64 ~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g--~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g-~~~eA~~~  139 (372)
                      +++++.++++++..+|++..+  |..+|.++...|  +|++|+.+++++++++|. ..+|..++.++..+| .+++++++
T Consensus        89 ~~~eL~~~~~~l~~~pK~y~a--W~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~  166 (567)
T 1dce_A           89 VKAELGFLESCLRVNPKSYGT--WHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAF  166 (567)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHH
Confidence            899999999999999996666  668899999999  779999999999999998 999999999999999 99999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHccCCCcHHHHHHHHHH
Q 017383          140 CTEALNLDDRYIKAYSRRATARKEL--------------GKLKESIEDSEFALRLEPQNQEIKKQLAEV  194 (372)
Q Consensus       140 ~~~Al~l~p~~~~a~~~lg~~~~~l--------------g~~~~A~~~~~~al~l~P~~~~~~~~l~~a  194 (372)
                      +.++|+.+|.+..+|+.+|.++..+              +.+++|++++.+|+.++|++..+|..+.-+
T Consensus       167 ~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~l  235 (567)
T 1dce_A          167 TDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWL  235 (567)
T ss_dssp             HHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHH
T ss_pred             HHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHH
Confidence            9999999999999999999999986              668999999999999999999988766544

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.32  E-value=9.6e-11  Score=110.42  Aligned_cols=134  Identities=10%  Similarity=0.050  Sum_probs=119.9

Q ss_pred             CCch-hhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhc----------HHHHHHHHHHHHccCCC-HHHHHHHHHHHHH
Q 017383           62 SRNY-DPVSHISSSLMNEESTPDATSEKELGNECFKQKK----------FKEAIDCYSRSIALSPT-AVAYANRAMAYLK  129 (372)
Q Consensus        62 g~~~-~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~----------~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~  129 (372)
                      |++. +|+..+..+|.++|.+..+  |+.++.++...|.          +++++.+++.++..+|. ..+|+.++.++..
T Consensus        43 ~e~s~eaL~~t~~~L~~nP~~yta--Wn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~  120 (331)
T 3dss_A           43 GELDESVLELTSQILGANPDFATL--WNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR  120 (331)
T ss_dssp             TCCSHHHHHHHHHHHTTCTTCHHH--HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCchhHHH--HHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhc
Confidence            4444 7999999999999996666  6678888877776          79999999999999998 9999999999999


Q ss_pred             hcC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHccCCCcHHHHHHHHHHHHH
Q 017383          130 LRR--FQEAEDDCTEALNLDDRYIKAYSRRATARKELGK-LKESIEDSEFALRLEPQNQEIKKQLAEVKSL  197 (372)
Q Consensus       130 ~g~--~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~-~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~  197 (372)
                      +|+  +++++.+|.+++.++|.+..+|+.++.+...+|. +++++.++.+++..+|.|..++.....+...
T Consensus       121 l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~  191 (331)
T 3dss_A          121 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQ  191 (331)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred             cCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            994  9999999999999999999999999999999999 6999999999999999999997666555443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.32  E-value=2.8e-12  Score=108.93  Aligned_cols=103  Identities=17%  Similarity=0.143  Sum_probs=90.4

Q ss_pred             HHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHcCCH--
Q 017383           92 NECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATA-RKELGKL--  167 (372)
Q Consensus        92 ~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~-~~~lg~~--  167 (372)
                      ..+...|+|++|+.+|++++..+|. ..++..+|.+|...|++++|+.+|++++.++|+++.+++.+|.+ +...|++  
T Consensus        18 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~   97 (177)
T 2e2e_A           18 HQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT   97 (177)
T ss_dssp             CCCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred             hhhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence            3356789999999999999999998 99999999999999999999999999999999999999999999 8899999  


Q ss_pred             HHHHHHHHHHHccCCCcHHHHHHHHHH
Q 017383          168 KESIEDSEFALRLEPQNQEIKKQLAEV  194 (372)
Q Consensus       168 ~~A~~~~~~al~l~P~~~~~~~~l~~a  194 (372)
                      ++|+..|++++.++|++..++..++.+
T Consensus        98 ~~A~~~~~~al~~~p~~~~~~~~la~~  124 (177)
T 2e2e_A           98 AQTRAMIDKALALDSNEITALMLLASD  124 (177)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            999999999999999998876554443

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.31  E-value=3e-11  Score=111.53  Aligned_cols=123  Identities=15%  Similarity=0.070  Sum_probs=106.2

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCch----HHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-------HHHHHHHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPD----ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------AVAYANRAMAYL  128 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~----a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-------~~~~~~la~~~~  128 (372)
                      ..|+|++|+..+.+++...+....    ...++.+|..+...|+|++|+.+|.+++.+.+.       ..+++++|.+|.
T Consensus        87 ~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~  166 (293)
T 2qfc_A           87 KQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYA  166 (293)
T ss_dssp             HTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence            678999999999999998876432    234567899999999999999999999986532       568999999999


Q ss_pred             HhcCHHHHHHHHHHHH---hcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 017383          129 KLRRFQEAEDDCTEAL---NLDDRY----IKAYSRRATARKELGKLKESIEDSEFALRLEP  182 (372)
Q Consensus       129 ~~g~~~eA~~~~~~Al---~l~p~~----~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P  182 (372)
                      .+|+|++|+.+|++|+   ...|++    ..+++++|.+|..+|++++|+.+|++++.+.+
T Consensus       167 ~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~  227 (293)
T 2qfc_A          167 ENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC  227 (293)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            9999999999999999   445553    36899999999999999999999999998864

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.31  E-value=2.7e-11  Score=96.72  Aligned_cols=107  Identities=12%  Similarity=-0.005  Sum_probs=93.3

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCch-HHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC----HHHHHHHHHHHHHhcCHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPD-ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQ  134 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~-a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~~la~~~~~~g~~~  134 (372)
                      ..|++++|+..|.+++..+|.+.. ..+++.+|.+++..|+|++|+.+|++++..+|+    ..+++++|.+|..+|+++
T Consensus        14 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~   93 (129)
T 2xev_A           14 KNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNT   93 (129)
T ss_dssp             HTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHH
T ss_pred             HhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHH
Confidence            679999999999999999998652 245779999999999999999999999999987    678999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 017383          135 EAEDDCTEALNLDDRYIKAYSRRATARKELGK  166 (372)
Q Consensus       135 eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~  166 (372)
                      +|+..|++++..+|++..+...+..+....++
T Consensus        94 ~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~~  125 (129)
T 2xev_A           94 EAQQTLQQVATQYPGSDAARVAQERLQSIRLG  125 (129)
T ss_dssp             HHHHHHHHHHHHSTTSHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHCCCChHHHHHHHHHHHHHhh
Confidence            99999999999999998887766665554443

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.30  E-value=8.3e-11  Score=106.76  Aligned_cols=123  Identities=14%  Similarity=0.102  Sum_probs=105.3

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHH----hhcHHHHHHHHHHHHccCCCHHHHHHHHHHHHH----hc
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFK----QKKFKEAIDCYSRSIALSPTAVAYANRAMAYLK----LR  131 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~----~g~~~~Ai~~y~~al~~~p~~~~~~~la~~~~~----~g  131 (372)
                      ..|++++|+.+|+++++  +.+  ..+++.+|.+|..    .+++++|+.+|+++++.+ ++.+++++|.+|..    .+
T Consensus        18 ~~~~~~~A~~~~~~a~~--~~~--~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~g~~~~~   92 (273)
T 1ouv_A           18 KEKDFTQAKKYFEKACD--LKE--NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-YSNGCHLLGNLYYSGQGVSQ   92 (273)
T ss_dssp             HTTCHHHHHHHHHHHHH--TTC--HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCC
T ss_pred             hCCCHHHHHHHHHHHHH--CCC--HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHhCCCCccc
Confidence            56899999999999998  443  3447799999999    999999999999999885 58889999999999    99


Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHccCCCcHHHHHHH
Q 017383          132 RFQEAEDDCTEALNLDDRYIKAYSRRATARKE----LGKLKESIEDSEFALRLEPQNQEIKKQL  191 (372)
Q Consensus       132 ~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~----lg~~~~A~~~~~~al~l~P~~~~~~~~l  191 (372)
                      ++++|+.+|++++.++  ++.+++++|.++..    .|++++|+.+|++++.+++  ..++..+
T Consensus        93 ~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l  152 (273)
T 1ouv_A           93 NTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLND--GDGCTIL  152 (273)
T ss_dssp             CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC--HHHHHHH
T ss_pred             CHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCc--HHHHHHH
Confidence            9999999999999874  88999999999999    9999999999999999873  4444333

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.30  E-value=8.6e-12  Score=102.30  Aligned_cols=124  Identities=18%  Similarity=0.196  Sum_probs=102.0

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCc----hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-------HHHHHHHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTP----DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------AVAYANRAMAYL  128 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~----~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-------~~~~~~la~~~~  128 (372)
                      ..|++++|+..+.+++...+...    .+.++..+|.+++..|+|++|+.+|++++.+.+.       ..++.++|.++.
T Consensus        21 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~  100 (164)
T 3ro3_A           21 LLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT  100 (164)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            67899999999999998754322    2346788999999999999999999999987532       667889999999


Q ss_pred             HhcCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 017383          129 KLRRFQEAEDDCTEALNLDD------RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQ  183 (372)
Q Consensus       129 ~~g~~~eA~~~~~~Al~l~p------~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~  183 (372)
                      .+|++++|+..+++++.+.+      ....++..+|.++..+|++++|+..+++++.+...
T Consensus       101 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A          101 LLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            99999999999999988742      22667888999999999999999999999877543

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.29  E-value=6.8e-11  Score=111.43  Aligned_cols=124  Identities=10%  Similarity=0.011  Sum_probs=115.6

Q ss_pred             chhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhh--cHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcC-HHHHHHH
Q 017383           64 NYDPVSHISSSLMNEESTPDATSEKELGNECFKQK--KFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRR-FQEAEDD  139 (372)
Q Consensus        64 ~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g--~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~-~~eA~~~  139 (372)
                      +++++.++..++..+|.+..+  |..++.++...|  .|++++.++.++++.+|. ..+|..++.+...+|. +++++.+
T Consensus        90 l~~EL~~~~~~L~~~PKny~a--W~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~  167 (331)
T 3dss_A           90 VKAELGFLESCLRVNPKSYGT--WHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAF  167 (331)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHH--HHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence            688999999999999996666  668899999988  499999999999999998 9999999999999999 6999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHccCCCcHHHHH
Q 017383          140 CTEALNLDDRYIKAYSRRATARKEL--------------GKLKESIEDSEFALRLEPQNQEIKK  189 (372)
Q Consensus       140 ~~~Al~l~p~~~~a~~~lg~~~~~l--------------g~~~~A~~~~~~al~l~P~~~~~~~  189 (372)
                      +.+++..+|.+..+|+.++.++..+              +.++++++++.+++.++|+|..+|.
T Consensus       168 ~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~  231 (331)
T 3dss_A          168 TDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWF  231 (331)
T ss_dssp             HHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence            9999999999999999999999988              5699999999999999999999874

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.29  E-value=1.4e-11  Score=106.06  Aligned_cols=121  Identities=14%  Similarity=0.018  Sum_probs=98.8

Q ss_pred             CCCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccC------CC-HHHHHHHHHHHHHhc
Q 017383           59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALS------PT-AVAYANRAMAYLKLR  131 (372)
Q Consensus        59 y~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~------p~-~~~~~~la~~~~~~g  131 (372)
                      +..|++++|...++.... +|. ..+.++..+|.+++..|+|++|+.+|.+++.+.      +. ..++.++|.+|..+|
T Consensus         3 ~~~g~~~~A~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g   80 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLA-HPA-TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG   80 (203)
T ss_dssp             ----CHHHHHHHHHHHHT-STT-THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             cccccHHHHHHHHHHhcC-ChH-HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence            467899999995444433 432 356778899999999999999999999999942      22 788999999999999


Q ss_pred             CHHHHHHHHHHHHhc---CC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 017383          132 RFQEAEDDCTEALNL---DD----RYIKAYSRRATARKELGKLKESIEDSEFALRLE  181 (372)
Q Consensus       132 ~~~eA~~~~~~Al~l---~p----~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~  181 (372)
                      ++++|+..+++++.+   .+    ....+++++|.++..+|++++|+..|++++.+.
T Consensus        81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  137 (203)
T 3gw4_A           81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYA  137 (203)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            999999999999998   33    336779999999999999999999999999764

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.29  E-value=2.3e-11  Score=95.85  Aligned_cols=99  Identities=12%  Similarity=0.103  Sum_probs=85.6

Q ss_pred             hhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 017383           65 YDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEA  143 (372)
Q Consensus        65 ~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~A  143 (372)
                      ..|+..|++++..+|.+..  .++.+|.+|+..|+|++|+.+|++++.++|. ..+|+++|.+|..+|++++|+..|+++
T Consensus         2 ~~a~~~~~~al~~~p~~~~--~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a   79 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNML--LRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESG   79 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCcHH--HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            5789999999999998554  5779999999999999999999999999998 999999999999999999999999999


Q ss_pred             HhcCCCC--HHHHHHHHHHHHHcC
Q 017383          144 LNLDDRY--IKAYSRRATARKELG  165 (372)
Q Consensus       144 l~l~p~~--~~a~~~lg~~~~~lg  165 (372)
                      +.++|..  ..+...+...+..+|
T Consensus        80 l~~~~~~~~~~~~~~l~~~l~~l~  103 (115)
T 2kat_A           80 LAAAQSRGDQQVVKELQVFLRRLA  103 (115)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHhccccccHHHHHHHHHHHHHhc
Confidence            9998853  455555555554444

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.28  E-value=8.1e-12  Score=119.73  Aligned_cols=122  Identities=19%  Similarity=0.191  Sum_probs=109.9

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCch--HHHHHHHHHHHHHhhcHHHHHHHHHHHHcc------CCC-HHHHHHHHHHHHHh
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPD--ATSEKELGNECFKQKKFKEAIDCYSRSIAL------SPT-AVAYANRAMAYLKL  130 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~--a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~------~p~-~~~~~~la~~~~~~  130 (372)
                      ..|++++|+..|++++...|.+..  +.++..+|.+|+..|+|++|+.+|++++.+      .|. ..++.++|.+|..+
T Consensus        60 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~  139 (411)
T 4a1s_A           60 NAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVM  139 (411)
T ss_dssp             HTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHC
Confidence            779999999999999999988653  356889999999999999999999999987      344 88899999999999


Q ss_pred             cCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHccC
Q 017383          131 RRFQEAEDDCTEALNL------DDRYIKAYSRRATARKELGK-----------------LKESIEDSEFALRLE  181 (372)
Q Consensus       131 g~~~eA~~~~~~Al~l------~p~~~~a~~~lg~~~~~lg~-----------------~~~A~~~~~~al~l~  181 (372)
                      |++++|+.+|++++.+      .+....++.++|.++..+|+                 +++|+.+|++++.+.
T Consensus       140 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~  213 (411)
T 4a1s_A          140 GRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLM  213 (411)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            9999999999999998      56678899999999999999                 999999999998875

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.28  E-value=4.7e-11  Score=89.12  Aligned_cols=83  Identities=33%  Similarity=0.482  Sum_probs=67.7

Q ss_pred             hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 017383           83 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATAR  161 (372)
Q Consensus        83 ~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~  161 (372)
                      .+..++.+|.+++..|+|++|+.+|++++.++|. ..++.++|.++..+|++++|+.+|++++.++|++..++.++|.++
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~   87 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK   87 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            3455678888888888888888888888888887 778888888888888888888888888888888888888888887


Q ss_pred             HHcC
Q 017383          162 KELG  165 (372)
Q Consensus       162 ~~lg  165 (372)
                      ..+|
T Consensus        88 ~~~g   91 (91)
T 1na3_A           88 QKQG   91 (91)
T ss_dssp             HHHC
T ss_pred             HhcC
Confidence            7654

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.26  E-value=1.9e-10  Score=104.32  Aligned_cols=136  Identities=18%  Similarity=0.150  Sum_probs=107.8

Q ss_pred             CCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHH----hhcHHHHHHHHHHHHccCCCHHHHHHHHHHHHH----hcC
Q 017383           61 YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFK----QKKFKEAIDCYSRSIALSPTAVAYANRAMAYLK----LRR  132 (372)
Q Consensus        61 ~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~----~g~~~~Ai~~y~~al~~~p~~~~~~~la~~~~~----~g~  132 (372)
                      .+++++|+.+|+++++.+    ...+++.+|.+|..    .+++++|+.+|+++++.+ ++.+++++|.+|..    .++
T Consensus        55 ~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~~~~~~~~  129 (273)
T 1ouv_A           55 EKNLKKAASFYAKACDLN----YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK-YAEGCASLGGIYHDGKVVTRD  129 (273)
T ss_dssp             CCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHCSSSCCC
T ss_pred             CCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC-CccHHHHHHHHHHcCCCcccC
Confidence            788899999999998876    34457788999988    999999999999998874 47888899999988    899


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHccCCCcHHHH--------------HHHHHH
Q 017383          133 FQEAEDDCTEALNLDDRYIKAYSRRATARKE----LGKLKESIEDSEFALRLEPQNQEIK--------------KQLAEV  194 (372)
Q Consensus       133 ~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~----lg~~~~A~~~~~~al~l~P~~~~~~--------------~~l~~a  194 (372)
                      +++|+.+|++++.++  +..+++++|.++..    .+++++|+.+|++++.+++  ..++              +.+.+|
T Consensus       130 ~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~g~~~~~~~~~A  205 (273)
T 1ouv_A          130 FKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKD--SPGCFNAGNMYHHGEGATKNFKEA  205 (273)
T ss_dssp             HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHTCSSCCCHHHH
T ss_pred             HHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHcCCCCCccHHHH
Confidence            999999999998876  67888889998888    8899999999999888753  3332              234455


Q ss_pred             HHHHHHHHHhh
Q 017383          195 KSLYEKEVFQK  205 (372)
Q Consensus       195 ~~~~~~~~~~~  205 (372)
                      ...+++++...
T Consensus       206 ~~~~~~a~~~~  216 (273)
T 1ouv_A          206 LARYSKACELE  216 (273)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHhCC
Confidence            55666655544

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.26  E-value=2.2e-11  Score=104.78  Aligned_cols=123  Identities=12%  Similarity=0.098  Sum_probs=105.0

Q ss_pred             CCCCchhhHHHHHhhhhcCCC----CchHHHHHHHHHHHHHhhcHHHHHHHHHHHHcc------CC-C-HHHHHHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEES----TPDATSEKELGNECFKQKKFKEAIDCYSRSIAL------SP-T-AVAYANRAMAY  127 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~----~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~------~p-~-~~~~~~la~~~  127 (372)
                      ..|++++|+.+|.+++.....    ...+.++..+|.++...|++++|+.+|.+++.+      ++ . ..++.++|.++
T Consensus        38 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~  117 (203)
T 3gw4_A           38 FMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVA  117 (203)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred             HhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHH
Confidence            779999999999999983321    125567889999999999999999999999998      33 2 67899999999


Q ss_pred             HHhcCHHHHHHHHHHHHhcCCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 017383          128 LKLRRFQEAEDDCTEALNLDDR--Y----IKAYSRRATARKELGKLKESIEDSEFALRLEP  182 (372)
Q Consensus       128 ~~~g~~~eA~~~~~~Al~l~p~--~----~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P  182 (372)
                      ..+|++++|+..+++++.+.+.  +    ..++..+|.++..+|++++|...|++++.+..
T Consensus       118 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  178 (203)
T 3gw4_A          118 LHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA  178 (203)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence            9999999999999999976422  1    44578999999999999999999999998754

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.26  E-value=9.3e-11  Score=103.29  Aligned_cols=112  Identities=8%  Similarity=-0.062  Sum_probs=52.8

Q ss_pred             CCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhh----cHHHHHHHHHHHHccCCC-HHHHHHHHHHHHH----hcC
Q 017383           62 SRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQK----KFKEAIDCYSRSIALSPT-AVAYANRAMAYLK----LRR  132 (372)
Q Consensus        62 g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g----~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~----~g~  132 (372)
                      +++++|+.+|+++++..    .+.+++.+|.+|.. +    ++++|+.+|+++++  +. +.+++++|.+|..    .++
T Consensus        32 ~~~~~A~~~~~~a~~~g----~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d  104 (212)
T 3rjv_A           32 GDYQKAEYWAQKAAAQG----DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATD  104 (212)
T ss_dssp             TCHHHHHHHHHHHHHTT----CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCC
T ss_pred             CCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccC
Confidence            44455555555554432    22223344544444 3    45555555555432  22 4444455555544    445


Q ss_pred             HHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHcc
Q 017383          133 FQEAEDDCTEALNLDD--RYIKAYSRRATARKE----LGKLKESIEDSEFALRL  180 (372)
Q Consensus       133 ~~eA~~~~~~Al~l~p--~~~~a~~~lg~~~~~----lg~~~~A~~~~~~al~l  180 (372)
                      +++|+.+|++|+..++  .++.+++++|.+|..    .+++++|+.+|++++.+
T Consensus       105 ~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~  158 (212)
T 3rjv_A          105 VAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL  158 (212)
T ss_dssp             HHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence            5555555555554444  234455555555544    44455555555555444

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.25  E-value=4.1e-11  Score=105.60  Aligned_cols=109  Identities=14%  Similarity=0.053  Sum_probs=62.6

Q ss_pred             hhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHhc----CHHHHHHHHH
Q 017383           66 DPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLR----RFQEAEDDCT  141 (372)
Q Consensus        66 ~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~~la~~~~~~g----~~~eA~~~~~  141 (372)
                      +|+..|+++.+..    .+.+++.+|.+|+..+++++|+.+|+++++.. ++.+++++|.+|.. +    ++++|+.+|+
T Consensus         4 eA~~~~~~aa~~g----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g-~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~   77 (212)
T 3rjv_A            4 EPGSQYQQQAEAG----DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG-DGDALALLAQLKIR-NPQQADYPQARQLAE   77 (212)
T ss_dssp             CTTHHHHHHHHTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred             hHHHHHHHHHHCC----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence            3555555555542    23334466666666666666666666665431 25556666666655 4    5666666666


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHccCC
Q 017383          142 EALNLDDRYIKAYSRRATARKE----LGKLKESIEDSEFALRLEP  182 (372)
Q Consensus       142 ~Al~l~p~~~~a~~~lg~~~~~----lg~~~~A~~~~~~al~l~P  182 (372)
                      +|+.  +.++.+++++|.+|..    .+++++|+.+|++++...|
T Consensus        78 ~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~  120 (212)
T 3rjv_A           78 KAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSE  120 (212)
T ss_dssp             HHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTT
T ss_pred             HHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCC
Confidence            6643  3456666666666655    5566666666666666655

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.25  E-value=7e-11  Score=111.95  Aligned_cols=122  Identities=6%  Similarity=-0.040  Sum_probs=85.1

Q ss_pred             hhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhh-cHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHh-c-CHHHHHHHH
Q 017383           65 YDPVSHISSSLMNEESTPDATSEKELGNECFKQK-KFKEAIDCYSRSIALSPT-AVAYANRAMAYLKL-R-RFQEAEDDC  140 (372)
Q Consensus        65 ~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g-~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~-g-~~~eA~~~~  140 (372)
                      ++|+..+.++|.++|.+..+  ++.+|.++...| .+++++.+++.+|..+|+ ..+|+.|+.++..+ + ++++++.++
T Consensus        71 e~AL~lt~~~L~~nP~~yta--Wn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~  148 (349)
T 3q7a_A           71 ERALELTEIIVRMNPAHYTV--WQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYI  148 (349)
T ss_dssp             HHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCchhHHH--HHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence            46677777777777774444  556677776666 477777777777777776 77777777777766 6 667777777


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHccCCCcHHHH
Q 017383          141 TEALNLDDRYIKAYSRRATARKELGKLK--------ESIEDSEFALRLEPQNQEIK  188 (372)
Q Consensus       141 ~~Al~l~p~~~~a~~~lg~~~~~lg~~~--------~A~~~~~~al~l~P~~~~~~  188 (372)
                      .+++.++|.+..+|+.++.+...+|.++        ++++++.+++.++|.|..++
T Consensus       149 ~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW  204 (349)
T 3q7a_A          149 HGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAW  204 (349)
T ss_dssp             HHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHH
Confidence            7777777777777777777777776666        77777777777777776664

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.25  E-value=1.5e-11  Score=116.89  Aligned_cols=121  Identities=20%  Similarity=0.225  Sum_probs=103.5

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCch--HHHHHHHHHHHHHhhcHHHHHHHHHHHHccC------CC-HHHHHHHHHHHHHh
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPD--ATSEKELGNECFKQKKFKEAIDCYSRSIALS------PT-AVAYANRAMAYLKL  130 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~--a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~------p~-~~~~~~la~~~~~~  130 (372)
                      ..|++++|+.+|++++...|.++.  +.++..+|.+++..|+|++|+.+|++++.+.      |. ..++.++|.+|..+
T Consensus        21 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~  100 (406)
T 3sf4_A           21 KSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVL  100 (406)
T ss_dssp             HTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHc
Confidence            678999999999999999887654  4567889999999999999999999998873      22 77889999999999


Q ss_pred             cCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHcc
Q 017383          131 RRFQEAEDDCTEALNLDDRY------IKAYSRRATARKELGK--------------------LKESIEDSEFALRL  180 (372)
Q Consensus       131 g~~~eA~~~~~~Al~l~p~~------~~a~~~lg~~~~~lg~--------------------~~~A~~~~~~al~l  180 (372)
                      |++++|+.++.+++.+.+..      ..++..+|.++...|+                    +++|+..|++++.+
T Consensus       101 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~  176 (406)
T 3sf4_A          101 GNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSL  176 (406)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            99999999999999886653      5588899999999999                    99999999998876

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.24  E-value=1e-11  Score=94.96  Aligned_cols=87  Identities=17%  Similarity=0.171  Sum_probs=43.8

Q ss_pred             HHHHHHHHhhcHHHHHHHHHHHHccCCC-HH-HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 017383           89 ELGNECFKQKKFKEAIDCYSRSIALSPT-AV-AYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGK  166 (372)
Q Consensus        89 ~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~-~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~  166 (372)
                      .+|..++..|+|++|+.+|+++++.+|+ .. +++++|.+|..+|++++|+.+|++++.++|++..++++        +.
T Consensus         5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~   76 (99)
T 2kc7_A            5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KM   76 (99)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HH
Confidence            3455555555555555555555555554 44 55555555555555555555555555555555444432        33


Q ss_pred             HHHHHHHHHHHHccCCC
Q 017383          167 LKESIEDSEFALRLEPQ  183 (372)
Q Consensus       167 ~~~A~~~~~~al~l~P~  183 (372)
                      +.+|+..|++++.++|+
T Consensus        77 ~~~a~~~~~~~~~~~p~   93 (99)
T 2kc7_A           77 VMDILNFYNKDMYNQLE   93 (99)
T ss_dssp             HHHHHHHHCCTTHHHHC
T ss_pred             HHHHHHHHHHHhccCcc
Confidence            44444444444444443

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.24  E-value=4.1e-12  Score=121.82  Aligned_cols=165  Identities=18%  Similarity=0.148  Sum_probs=124.7

Q ss_pred             HHHhhHHHHHHHHHHHHHHhhhcCCCCCccccccccccCCCCCCCC-CCCCchhhHHHHHhhhhcCC----CCchHHHHH
Q 017383           14 GFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEE----STPDATSEK   88 (372)
Q Consensus        14 ~~~~~l~~~e~~ik~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~~A~~~~~~al~~~p----~~~~a~~~~   88 (372)
                      ..+-...+|++++....+.+...+.......     .....+|..| ..|++++|+.+|++++....    ....+.++.
T Consensus        56 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  130 (411)
T 4a1s_A           56 ERLCNAGDCRAGVAFFQAAIQAGTEDLRTLS-----AIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG  130 (411)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHH-----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHhCcHHHHHHHHHHHHHhcccChhHHH-----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence            3344556788888877777765431110000     0011223334 67999999999999988621    112456688


Q ss_pred             HHHHHHHHhhcHHHHHHHHHHHHccC------CC-HHHHHHHHHHHHHhcC-----------------HHHHHHHHHHHH
Q 017383           89 ELGNECFKQKKFKEAIDCYSRSIALS------PT-AVAYANRAMAYLKLRR-----------------FQEAEDDCTEAL  144 (372)
Q Consensus        89 ~~g~~~~~~g~~~~Ai~~y~~al~~~------p~-~~~~~~la~~~~~~g~-----------------~~eA~~~~~~Al  144 (372)
                      .+|.+|+..|++++|+.+|.+++.+.      +. ..++.++|.+|..+|+                 +++|+.++.+++
T Consensus       131 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al  210 (411)
T 4a1s_A          131 NLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENL  210 (411)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence            99999999999999999999999983      33 7789999999999999                 999999999998


Q ss_pred             hcC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 017383          145 NLD------DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQ  183 (372)
Q Consensus       145 ~l~------p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~  183 (372)
                      .+.      +....++..+|.++..+|++++|+.+|++++.+.+.
T Consensus       211 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  255 (411)
T 4a1s_A          211 KLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIARE  255 (411)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence            874      344678999999999999999999999999998764

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.23  E-value=1.9e-11  Score=112.39  Aligned_cols=122  Identities=20%  Similarity=0.219  Sum_probs=107.4

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCch--HHHHHHHHHHHHHhhcHHHHHHHHHHHHccC------CC-HHHHHHHHHHHHHh
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPD--ATSEKELGNECFKQKKFKEAIDCYSRSIALS------PT-AVAYANRAMAYLKL  130 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~--a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~------p~-~~~~~~la~~~~~~  130 (372)
                      ..|++++|+..|++++..+|.++.  +..+..+|.+++..|++++|+.+|++++.+.      +. ..++..+|.+|..+
T Consensus        17 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~   96 (338)
T 3ro2_A           17 KSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVL   96 (338)
T ss_dssp             HTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred             HhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHc
Confidence            679999999999999999988654  4568899999999999999999999999873      23 78899999999999


Q ss_pred             cCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHccC
Q 017383          131 RRFQEAEDDCTEALNLDDRY------IKAYSRRATARKELGK--------------------LKESIEDSEFALRLE  181 (372)
Q Consensus       131 g~~~eA~~~~~~Al~l~p~~------~~a~~~lg~~~~~lg~--------------------~~~A~~~~~~al~l~  181 (372)
                      |++++|+..+.+++.+.+..      ..++..+|.++..+|+                    +++|+..|++++.+.
T Consensus        97 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~  173 (338)
T 3ro2_A           97 GNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLV  173 (338)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999986543      4589999999999999                    999999999998763

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.23  E-value=1.2e-11  Score=117.49  Aligned_cols=124  Identities=22%  Similarity=0.245  Sum_probs=88.1

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCch----HHHHHHHHHHHHHhhc--------------------HHHHHHHHHHHHccC-
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPD----ATSEKELGNECFKQKK--------------------FKEAIDCYSRSIALS-  114 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~----a~~~~~~g~~~~~~g~--------------------~~~Ai~~y~~al~~~-  114 (372)
                      ..|++++|+.++.+++...+....    +.++..+|.+|...|+                    |++|+.+|.+++.+. 
T Consensus        99 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~  178 (406)
T 3sf4_A           99 VLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVT  178 (406)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            567777777777777776543322    4456677777777777                    777877777777652 


Q ss_pred             -----CC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 017383          115 -----PT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY------IKAYSRRATARKELGKLKESIEDSEFALRLEP  182 (372)
Q Consensus       115 -----p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~------~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P  182 (372)
                           +. ..++.++|.+|..+|++++|+.++++++.+.+..      ..++.++|.++..+|++++|+.+|++++.+.|
T Consensus       179 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  258 (406)
T 3sf4_A          179 ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLAR  258 (406)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence                 12 5667777888888888888888888877775543      23777778888888888888888888777655


Q ss_pred             C
Q 017383          183 Q  183 (372)
Q Consensus       183 ~  183 (372)
                      .
T Consensus       259 ~  259 (406)
T 3sf4_A          259 Q  259 (406)
T ss_dssp             H
T ss_pred             h
Confidence            4

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.22  E-value=1.8e-10  Score=115.26  Aligned_cols=142  Identities=9%  Similarity=-0.012  Sum_probs=121.4

Q ss_pred             CCCch-------hhHHHHHhhhh-cCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-H-HHHHHHHHHHHHh
Q 017383           61 YSRNY-------DPVSHISSSLM-NEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-A-VAYANRAMAYLKL  130 (372)
Q Consensus        61 ~g~~~-------~A~~~~~~al~-~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~-~~~~~la~~~~~~  130 (372)
                      .|+++       +|+..|++++. ..|++..  .+..+|..+...|++++|...|++++++.|. . .+|.++|.++...
T Consensus       292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~--l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~  369 (530)
T 2ooe_A          292 KGDMNNAKLFSDEAANIYERAISTLLKKNML--LYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRA  369 (530)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHTTTTCSSCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHH
T ss_pred             ccchhhhhhhhHHHHHHHHHHHHHhCcccHH--HHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHh
Confidence            68887       89999999997 7888544  4779999999999999999999999999997 4 6899999999999


Q ss_pred             cCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHccCCCcHHHHHH----------HHHHHHHHH
Q 017383          131 RRFQEAEDDCTEALNLDDRYIKAYSRRATA-RKELGKLKESIEDSEFALRLEPQNQEIKKQ----------LAEVKSLYE  199 (372)
Q Consensus       131 g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~-~~~lg~~~~A~~~~~~al~l~P~~~~~~~~----------l~~a~~~~~  199 (372)
                      |++++|+..|.+|++..|.....+...+.+ +...|++++|...|+++++..|++..++..          ..+|+..|+
T Consensus       370 ~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~  449 (530)
T 2ooe_A          370 EGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFE  449 (530)
T ss_dssp             HHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHH
Confidence            999999999999999999888887776655 456999999999999999999999887643          445555666


Q ss_pred             HHHHh
Q 017383          200 KEVFQ  204 (372)
Q Consensus       200 ~~~~~  204 (372)
                      +++..
T Consensus       450 ~al~~  454 (530)
T 2ooe_A          450 RVLTS  454 (530)
T ss_dssp             HHHHS
T ss_pred             HHHhc
Confidence            55544

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.21  E-value=4.3e-11  Score=94.83  Aligned_cols=104  Identities=14%  Similarity=0.166  Sum_probs=92.9

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC--------HHHHHHHHHHHHHhc
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT--------AVAYANRAMAYLKLR  131 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~--------~~~~~~la~~~~~~g  131 (372)
                      ..|++++|+..|.+++..+|.+.  ..+..+|.+++..|+|++|+.+|.+++.++|.        ..+++++|.+|..+|
T Consensus        16 ~~~~~~~A~~~~~~a~~~~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~   93 (131)
T 1elr_A           16 KKKDFDTALKHYDKAKELDPTNM--TYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEE   93 (131)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HhcCHHHHHHHHHHHHhcCCccH--HHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhc
Confidence            67899999999999999998854  45779999999999999999999999998763        678999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 017383          132 RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGK  166 (372)
Q Consensus       132 ~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~  166 (372)
                      ++++|+.+|++++.++| +...+..++.+...+++
T Consensus        94 ~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~  127 (131)
T 1elr_A           94 KYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE  127 (131)
T ss_dssp             CHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence            99999999999999999 68888888887766543

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.21  E-value=1.4e-10  Score=109.94  Aligned_cols=104  Identities=13%  Similarity=0.089  Sum_probs=93.4

Q ss_pred             HHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-C
Q 017383           89 ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR-RFQEAEDDCTEALNLDDRYIKAYSRRATARKEL-G  165 (372)
Q Consensus        89 ~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g-~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~l-g  165 (372)
                      .+..+....+..++|+.++.++|.++|. ..+|+.|+.++..+| .+++++..+..++..+|.+..+|+.++.++..+ +
T Consensus        59 ~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~  138 (349)
T 3q7a_A           59 YFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISP  138 (349)
T ss_dssp             HHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcC
Confidence            4444555556668999999999999999 999999999999999 599999999999999999999999999999998 8


Q ss_pred             -CHHHHHHHHHHHHccCCCcHHHHHHHH
Q 017383          166 -KLKESIEDSEFALRLEPQNQEIKKQLA  192 (372)
Q Consensus       166 -~~~~A~~~~~~al~l~P~~~~~~~~l~  192 (372)
                       ++++++..+.+++.++|.|..++....
T Consensus       139 ~~~~~EL~~~~k~L~~dpkNy~AW~~R~  166 (349)
T 3q7a_A          139 QDPVSEIEYIHGSLLPDPKNYHTWAYLH  166 (349)
T ss_dssp             SCCHHHHHHHHHHTSSCTTCHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence             999999999999999999998874433

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.18  E-value=9.5e-11  Score=89.44  Aligned_cols=87  Identities=16%  Similarity=0.311  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHH--HHHHHHHH
Q 017383          120 YANRAMAYLKLRRFQEAEDDCTEALNLDDRYIK-AYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK--KQLAEVKS  196 (372)
Q Consensus       120 ~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~-a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~--~~l~~a~~  196 (372)
                      .+++|.+++..|++++|+..|++++.++|++.. +++.+|.++..+|++++|+.+|++++.++|++..++  ..+.++..
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~   82 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQARKMVMDILN   82 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence            367899999999999999999999999999999 999999999999999999999999999999999887  77888877


Q ss_pred             HHHHHHHhhh
Q 017383          197 LYEKEVFQKA  206 (372)
Q Consensus       197 ~~~~~~~~~~  206 (372)
                      .|++.....+
T Consensus        83 ~~~~~~~~~p   92 (99)
T 2kc7_A           83 FYNKDMYNQL   92 (99)
T ss_dssp             HHCCTTHHHH
T ss_pred             HHHHHhccCc
Confidence            7766554443

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.17  E-value=3.4e-10  Score=84.35  Aligned_cols=80  Identities=34%  Similarity=0.408  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHH
Q 017383          117 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS  196 (372)
Q Consensus       117 ~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~  196 (372)
                      +.+++++|.++...|++++|+.+|++++.++|.+..+++++|.++...|++++|+..|++++.++|++..++..+..+..
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~   88 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ   88 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            78899999999999999999999999999999999999999999999999999999999999999999988877776643

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.17  E-value=3.8e-10  Score=87.26  Aligned_cols=68  Identities=18%  Similarity=0.207  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCc
Q 017383          117 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN  184 (372)
Q Consensus       117 ~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~  184 (372)
                      +.++.++|.+++..|+|++|+..|++++.++|+++.+++++|.++..+|++++|+.+|++++.++|++
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   71 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA   71 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence            56789999999999999999999999999999999999999999999999999999999999999998

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.15  E-value=1.1e-10  Score=95.52  Aligned_cols=100  Identities=18%  Similarity=0.269  Sum_probs=89.7

Q ss_pred             hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC-----
Q 017383           83 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY-----  150 (372)
Q Consensus        83 ~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-------~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~-----  150 (372)
                      .+.++..+|.+++..|+|++|+.+|.+++.+.+.       ..++.++|.++..+|++++|+.++++++.+.+..     
T Consensus         8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~   87 (164)
T 3ro3_A            8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV   87 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHH
Confidence            4567889999999999999999999999998643       4689999999999999999999999999986543     


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 017383          151 -IKAYSRRATARKELGKLKESIEDSEFALRLEP  182 (372)
Q Consensus       151 -~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P  182 (372)
                       ..+++++|.++..+|++++|+..|++++.+.+
T Consensus        88 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~  120 (164)
T 3ro3_A           88 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ  120 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence             67899999999999999999999999998743

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.15  E-value=5.1e-11  Score=109.45  Aligned_cols=122  Identities=21%  Similarity=0.242  Sum_probs=59.5

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCch----HHHHHHHHHHHHHhhc--------------------HHHHHHHHHHHHccCC
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPD----ATSEKELGNECFKQKK--------------------FKEAIDCYSRSIALSP  115 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~----a~~~~~~g~~~~~~g~--------------------~~~Ai~~y~~al~~~p  115 (372)
                      ..|++++|+..+.+++...+....    +.++..+|.++...|+                    +++|+.+|.+++.+.+
T Consensus        95 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~  174 (338)
T 3ro2_A           95 VLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVT  174 (338)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            445555555555555544332211    2234455555555555                    5555555555544311


Q ss_pred             ------C-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 017383          116 ------T-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY------IKAYSRRATARKELGKLKESIEDSEFALRLE  181 (372)
Q Consensus       116 ------~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~------~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~  181 (372)
                            . ..++.++|.++..+|++++|+..+++++.+.+..      ..++..+|.++...|++++|+..|++++.+.
T Consensus       175 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  253 (338)
T 3ro2_A          175 ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLA  253 (338)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             hcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence                  1 3445555555555555555555555555443322      2245555555555555555555555555443

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.15  E-value=2.7e-10  Score=87.86  Aligned_cols=71  Identities=15%  Similarity=0.191  Sum_probs=61.6

Q ss_pred             CCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCc
Q 017383          114 SPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN  184 (372)
Q Consensus       114 ~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~  184 (372)
                      +|+ +.+++++|.+|+.+|++++|+.+|+++++++|+++.+|+++|.++..+|++++|+..|++++.+.|.+
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~   74 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE   74 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence            566 88889999999999999999999999999999999999999999999999999999999999887644

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.13  E-value=6.8e-10  Score=105.25  Aligned_cols=124  Identities=9%  Similarity=-0.005  Sum_probs=106.5

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCc---hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-------HHHHHHHHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTP---DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------AVAYANRAMAYLK  129 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~---~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-------~~~~~~la~~~~~  129 (372)
                      ..|++++|+..+++++...|...   .+.++..+|.+++..|++++|+.+|.+++.+.+.       ..++.++|.++..
T Consensus        26 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~  105 (373)
T 1hz4_A           26 NDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA  105 (373)
T ss_dssp             HTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence            56899999999999999876543   2335778999999999999999999999987643       4557899999999


Q ss_pred             hcCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 017383          130 LRRFQEAEDDCTEALNLD--------DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQ  183 (372)
Q Consensus       130 ~g~~~eA~~~~~~Al~l~--------p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~  183 (372)
                      .|++++|+..|++++.+.        |....++.++|.++...|++++|...+++++.+.+.
T Consensus       106 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  167 (373)
T 1hz4_A          106 QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS  167 (373)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred             CCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence            999999999999999875        445677888999999999999999999999998875

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.12  E-value=3.4e-10  Score=104.05  Aligned_cols=117  Identities=14%  Similarity=0.076  Sum_probs=93.7

Q ss_pred             HHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCC
Q 017383           90 LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY--IKAYSRRATARKELGK  166 (372)
Q Consensus        90 ~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~--~~a~~~lg~~~~~lg~  166 (372)
                      ++..+...|+|++|.+.|..++...|. . +++.+|.+++..++|++|+..|+.++...+..  ..+++++|.++..+|+
T Consensus       108 yA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~  186 (282)
T 4f3v_A          108 FAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLAL  186 (282)
T ss_dssp             HHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCC
Confidence            456788899999999999999988888 6 89999999999999999999999887764332  4589999999999999


Q ss_pred             HHHHHHHHHHHHccC--CC-cHHHH----------HHHHHHHHHHHHHHHhhhh
Q 017383          167 LKESIEDSEFALRLE--PQ-NQEIK----------KQLAEVKSLYEKEVFQKAS  207 (372)
Q Consensus       167 ~~~A~~~~~~al~l~--P~-~~~~~----------~~l~~a~~~~~~~~~~~~~  207 (372)
                      +++|+.+|++++.-.  |. ..++.          ++..+|...|++.+...|.
T Consensus       187 ~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~  240 (282)
T 4f3v_A          187 FTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE  240 (282)
T ss_dssp             HHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence            999999999998654  54 44443          4556666666666666554

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.11  E-value=5.9e-10  Score=111.45  Aligned_cols=142  Identities=13%  Similarity=0.064  Sum_probs=121.4

Q ss_pred             hhhHHHHHhhhhcCCCCchHHHHHHHHHHHHH-------hhcHH-------HHHHHHHHHHc-cCCC-HHHHHHHHHHHH
Q 017383           65 YDPVSHISSSLMNEESTPDATSEKELGNECFK-------QKKFK-------EAIDCYSRSIA-LSPT-AVAYANRAMAYL  128 (372)
Q Consensus        65 ~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~-------~g~~~-------~Ai~~y~~al~-~~p~-~~~~~~la~~~~  128 (372)
                      .+++..|++++..+|.++..  |..+|..+..       .|+++       +|+..|++|+. ++|+ ..+|..+|..+.
T Consensus       255 ~~a~~~y~~al~~~p~~~~~--w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~  332 (530)
T 2ooe_A          255 KRVMFAYEQCLLVLGHHPDI--WYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE  332 (530)
T ss_dssp             HHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            37788999999999996555  6688998886       79987       99999999997 7998 999999999999


Q ss_pred             HhcCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHH-----------HHHHHHHH
Q 017383          129 KLRRFQEAEDDCTEALNLDDRYI-KAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK-----------KQLAEVKS  196 (372)
Q Consensus       129 ~~g~~~eA~~~~~~Al~l~p~~~-~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~-----------~~l~~a~~  196 (372)
                      ..|++++|...|++++.++|.++ .+|..+|.++...|++++|...|++++...|.+...+           +...+|..
T Consensus       333 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~  412 (530)
T 2ooe_A          333 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFK  412 (530)
T ss_dssp             HTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHH
T ss_pred             hcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHH
Confidence            99999999999999999999985 6999999999999999999999999999988754432           23456677


Q ss_pred             HHHHHHHhhhhh
Q 017383          197 LYEKEVFQKASK  208 (372)
Q Consensus       197 ~~~~~~~~~~~~  208 (372)
                      .|++++...|..
T Consensus       413 ~~e~al~~~p~~  424 (530)
T 2ooe_A          413 IFELGLKKYGDI  424 (530)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHCCCC
Confidence            777776665543

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.11  E-value=3.3e-10  Score=87.16  Aligned_cols=89  Identities=16%  Similarity=0.177  Sum_probs=83.1

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC---HHHHHHHHHHHHHh-cCHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT---AVAYANRAMAYLKL-RRFQE  135 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~---~~~~~~la~~~~~~-g~~~e  135 (372)
                      ..|++++|+..|.+++..+|....  .+..+|.+++..|+|++|+.+|+++++++|.   ..++.++|.++..+ |++++
T Consensus        18 ~~~~~~~A~~~~~~a~~~~~~~~~--~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~   95 (112)
T 2kck_A           18 DAGNYTESIDLFEKAIQLDPEESK--YWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVE   95 (112)
T ss_dssp             SSCCHHHHHHHHHHHHHHCCCCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHH
T ss_pred             HhhhHHHHHHHHHHHHHhCcCCHH--HHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHH
Confidence            789999999999999999998544  4779999999999999999999999999986   88999999999999 99999


Q ss_pred             HHHHHHHHHhcCCCC
Q 017383          136 AEDDCTEALNLDDRY  150 (372)
Q Consensus       136 A~~~~~~Al~l~p~~  150 (372)
                      |+.++++++..+|..
T Consensus        96 A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           96 AEIAEARAKLEHHHH  110 (112)
T ss_dssp             HHHHHHHHGGGCCCC
T ss_pred             HHHHHHHHhhcccCC
Confidence            999999999999875

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.05  E-value=2.7e-09  Score=87.47  Aligned_cols=112  Identities=13%  Similarity=0.013  Sum_probs=101.0

Q ss_pred             CCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCCHHHHHHHHHHHHH----hcCHHHHH
Q 017383           62 SRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLK----LRRFQEAE  137 (372)
Q Consensus        62 g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~~la~~~~~----~g~~~eA~  137 (372)
                      +|+++|+.+|+++.+...  +.+.    +|.+|...+.+++|+.+|+++.+. -++.+++++|.+|..    .+++++|+
T Consensus         9 ~d~~~A~~~~~~aa~~g~--~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~-g~~~a~~~Lg~~y~~G~g~~~d~~~A~   81 (138)
T 1klx_A            9 KDLKKAIQYYVKACELNE--MFGC----LSLVSNSQINKQKLFQYLSKACEL-NSGNGCRFLGDFYENGKYVKKDLRKAA   81 (138)
T ss_dssp             HHHHHHHHHHHHHHHTTC--TTHH----HHHHTCTTSCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             cCHHHHHHHHHHHHcCCC--Hhhh----HHHHHHcCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence            478999999999999873  3553    899999999999999999999986 338999999999999    89999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHccCC
Q 017383          138 DDCTEALNLDDRYIKAYSRRATARKE----LGKLKESIEDSEFALRLEP  182 (372)
Q Consensus       138 ~~~~~Al~l~p~~~~a~~~lg~~~~~----lg~~~~A~~~~~~al~l~P  182 (372)
                      .+|++|.+.  .++.+++++|.+|..    .+++++|+.+|+++.++..
T Consensus        82 ~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~  128 (138)
T 1klx_A           82 QYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  128 (138)
T ss_dssp             HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence            999999987  789999999999999    9999999999999998843

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.04  E-value=7.7e-10  Score=85.24  Aligned_cols=86  Identities=16%  Similarity=0.237  Sum_probs=70.1

Q ss_pred             CCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC--HHHH
Q 017383           78 EESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY--IKAY  154 (372)
Q Consensus        78 ~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~--~~a~  154 (372)
                      +|++  +.+++.+|.+|+..|+|++|+.+|+++++++|+ ..+|+++|.+|..+|++++|+..|++++.+.|..  ..+.
T Consensus         3 ~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~   80 (100)
T 3ma5_A            3 DPED--PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDL   80 (100)
T ss_dssp             --CC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             CccC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHH
Confidence            5664  444779999999999999999999999999999 9999999999999999999999999999987643  4444


Q ss_pred             HHHHHHHHHcC
Q 017383          155 SRRATARKELG  165 (372)
Q Consensus       155 ~~lg~~~~~lg  165 (372)
                      ..+..++...+
T Consensus        81 ~~l~~~l~~~~   91 (100)
T 3ma5_A           81 SELQDAKLKAE   91 (100)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHcc
Confidence            44444444433

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.04  E-value=5.3e-10  Score=111.11  Aligned_cols=120  Identities=9%  Similarity=-0.041  Sum_probs=99.0

Q ss_pred             CCCCchhhHHHHHhhhhc-----CCCCc-hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccC-----CC----HHHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMN-----EESTP-DATSEKELGNECFKQKKFKEAIDCYSRSIALS-----PT----AVAYANRA  124 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~-----~p~~~-~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~-----p~----~~~~~~la  124 (372)
                      .+|+|++|+..|+++|++     .|+++ -+..+.++|.+|..+|+|++|+.+|+++|++.     |+    +..++|+|
T Consensus       321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  400 (490)
T 3n71_A          321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG  400 (490)
T ss_dssp             TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred             hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            678999999999999873     34443 35668899999999999999999999999862     33    78899999


Q ss_pred             HHHHHhcCHHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 017383          125 MAYLKLRRFQEAEDDCTEALNL-----DDRY---IKAYSRRATARKELGKLKESIEDSEFALR  179 (372)
Q Consensus       125 ~~~~~~g~~~eA~~~~~~Al~l-----~p~~---~~a~~~lg~~~~~lg~~~~A~~~~~~al~  179 (372)
                      .+|..+|+|++|+..|++|+.+     .|++   .....+++.++..+|.|++|...|.++.+
T Consensus       401 ~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~  463 (490)
T 3n71_A          401 LTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE  463 (490)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999875     4555   45567889999999999999999887753

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.98  E-value=2.2e-09  Score=101.71  Aligned_cols=122  Identities=12%  Similarity=0.061  Sum_probs=107.0

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCch----HHHHHHHHHHHHHhhcHHHHHHHHHHHHccC--------CC-HHHHHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPD----ATSEKELGNECFKQKKFKEAIDCYSRSIALS--------PT-AVAYANRAMA  126 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~----a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~--------p~-~~~~~~la~~  126 (372)
                      ..|++++|+..+.+++...+....    +.++..+|.+++..|+|++|+.+|++++.+.        |. ..++.++|.+
T Consensus        65 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  144 (373)
T 1hz4_A           65 CKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQL  144 (373)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHH
T ss_pred             hcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHH
Confidence            679999999999999987654432    3457789999999999999999999999875        33 6778899999


Q ss_pred             HHHhcCHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 017383          127 YLKLRRFQEAEDDCTEALNLDDR-----YIKAYSRRATARKELGKLKESIEDSEFALRLE  181 (372)
Q Consensus       127 ~~~~g~~~eA~~~~~~Al~l~p~-----~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~  181 (372)
                      +..+|++++|+..+++++.+.+.     ...++..+|.++...|++++|...+++++.+.
T Consensus       145 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~  204 (373)
T 1hz4_A          145 LWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLL  204 (373)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            99999999999999999998765     35788999999999999999999999999874

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.94  E-value=1.1e-08  Score=101.01  Aligned_cols=114  Identities=17%  Similarity=0.051  Sum_probs=77.9

Q ss_pred             CCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHh-----hcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHhc---C
Q 017383           61 YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQ-----KKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLR---R  132 (372)
Q Consensus        61 ~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~-----g~~~~Ai~~y~~al~~~p~~~~~~~la~~~~~~g---~  132 (372)
                      .+++++|+.+|+++++..    ...+++.+|.+|...     +++++|+.+|+++++..+ ..+++++|.+|...|   +
T Consensus       272 ~~d~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~-~~a~~~lg~~y~~~g~~~~  346 (490)
T 2xm6_A          272 AKEPLKALEWYRKSAEQG----NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGD-ATAQANLGAIYFRLGSEEE  346 (490)
T ss_dssp             SCCHHHHHHHHHHHHTTT----CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHSCCHHH
T ss_pred             CCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCccc
Confidence            467777777777777654    223355777777766     677777777777776532 566777777777654   6


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHccC
Q 017383          133 FQEAEDDCTEALNLDDRYIKAYSRRATARKE----LGKLKESIEDSEFALRLE  181 (372)
Q Consensus       133 ~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~----lg~~~~A~~~~~~al~l~  181 (372)
                      +++|+.+|+++++.  .++.+++++|.+|..    .+++++|+.+|++++...
T Consensus       347 ~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~  397 (490)
T 2xm6_A          347 HKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG  397 (490)
T ss_dssp             HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence            77777777777765  456777777777777    677777777777777654

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.90  E-value=1.7e-08  Score=83.70  Aligned_cols=97  Identities=12%  Similarity=0.043  Sum_probs=84.1

Q ss_pred             hcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhc---CHHHHHHHHHHHHhcC-C-CCHHHHHHHHHHHHHcCCHHHHH
Q 017383           98 KKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR---RFQEAEDDCTEALNLD-D-RYIKAYSRRATARKELGKLKESI  171 (372)
Q Consensus        98 g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g---~~~eA~~~~~~Al~l~-p-~~~~a~~~lg~~~~~lg~~~~A~  171 (372)
                      .....+...|.+.+..++. ..+.+++|.|+.+.+   ++++++..++..++.+ | +..+++|++|..++.+|+|++|.
T Consensus        12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~   91 (152)
T 1pc2_A           12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL   91 (152)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence            4456677788888887766 999999999999988   7779999999999998 7 67999999999999999999999


Q ss_pred             HHHHHHHccCCCcHHHHHHHHHH
Q 017383          172 EDSEFALRLEPQNQEIKKQLAEV  194 (372)
Q Consensus       172 ~~~~~al~l~P~~~~~~~~l~~a  194 (372)
                      .+++++|+++|+|.++......+
T Consensus        92 ~y~~~lL~ieP~n~QA~~Lk~~i  114 (152)
T 1pc2_A           92 KYVRGLLQTEPQNNQAKELERLI  114 (152)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHH
Confidence            99999999999999887554443

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.87  E-value=1.6e-08  Score=99.42  Aligned_cols=119  Identities=11%  Similarity=0.026  Sum_probs=77.0

Q ss_pred             CchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHh----hcHHHHHHHHHHHHccCCC-HHHHHHHHHH-H--HHhcCHH
Q 017383           63 RNYDPVSHISSSLMNEESTPDATSEKELGNECFKQ----KKFKEAIDCYSRSIALSPT-AVAYANRAMA-Y--LKLRRFQ  134 (372)
Q Consensus        63 ~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~----g~~~~Ai~~y~~al~~~p~-~~~~~~la~~-~--~~~g~~~  134 (372)
                      ++++|+..|+++....+.  .+..++++|.+|...    +++++|+.+|+++.   |. +.+++++|.+ |  ...++++
T Consensus       194 ~~~~A~~~~~~aa~~g~~--~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~  268 (452)
T 3e4b_A          194 QQAELLKQMEAGVSRGTV--TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVE  268 (452)
T ss_dssp             HHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHH
T ss_pred             cHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHH
Confidence            666777777777776655  444345667666544    56777777777766   44 6667777776 3  3566777


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHccCCCcHHHHHHHH
Q 017383          135 EAEDDCTEALNLDDRYIKAYSRRATARKELG-----KLKESIEDSEFALRLEPQNQEIKKQLA  192 (372)
Q Consensus       135 eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg-----~~~~A~~~~~~al~l~P~~~~~~~~l~  192 (372)
                      +|+.+|++++..  .++.+++++|.+|. .|     ++++|+.+|+++.   ++++.+...++
T Consensus       269 ~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg  325 (452)
T 3e4b_A          269 QMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLG  325 (452)
T ss_dssp             HHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHH
Confidence            777777776654  36677777777666 45     7777777777776   66666654444

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.86  E-value=6.5e-08  Score=95.56  Aligned_cols=119  Identities=13%  Similarity=-0.038  Sum_probs=94.1

Q ss_pred             CCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHH----hhcHHHHHHHHHHHHccCCCHHHHHHHHHHHHH----hcC
Q 017383           61 YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFK----QKKFKEAIDCYSRSIALSPTAVAYANRAMAYLK----LRR  132 (372)
Q Consensus        61 ~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~----~g~~~~Ai~~y~~al~~~p~~~~~~~la~~~~~----~g~  132 (372)
                      .+++++|+.+|+++++..    .+.+++.+|..|..    .+++++|+.+|+++++.. ++.+++++|.+|..    .++
T Consensus        56 ~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~g~g~~~~  130 (490)
T 2xm6_A           56 TKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG-LPQAQQNLGVMYHEGNGVKVD  130 (490)
T ss_dssp             CCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCC
T ss_pred             CcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCCCCC
Confidence            578888888888888763    34446688888888    888888888888887653 37788888888888    788


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHccCCCcHHHH
Q 017383          133 FQEAEDDCTEALNLDDRYIKAYSRRATARKE----LGKLKESIEDSEFALRLEPQNQEIK  188 (372)
Q Consensus       133 ~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~----lg~~~~A~~~~~~al~l~P~~~~~~  188 (372)
                      +++|+.+|++++..  .++.+++.+|.+|..    .+++++|+.+|++++..  ++..++
T Consensus       131 ~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~  186 (490)
T 2xm6_A          131 KAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSC  186 (490)
T ss_dssp             HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHH
T ss_pred             HHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHH
Confidence            88888888888775  578888888888887    78888888888888876  345554

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.84  E-value=2.7e-08  Score=94.31  Aligned_cols=123  Identities=11%  Similarity=0.073  Sum_probs=96.3

Q ss_pred             CCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhc-------HHHHHH-HHHH--HHccCCC-HHHHHHHHHHHHH
Q 017383           61 YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKK-------FKEAID-CYSR--SIALSPT-AVAYANRAMAYLK  129 (372)
Q Consensus        61 ~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~-------~~~Ai~-~y~~--al~~~p~-~~~~~~la~~~~~  129 (372)
                      ..++.+|+.+|+++++++|++..+++  .++.+|.-...       ...++. .+..  ++..+|. +.++..+|.+++.
T Consensus       212 ~~~~~~A~~l~e~Al~lDP~~a~A~A--~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~  289 (372)
T 3ly7_A          212 DKSLNRASELLGEIVQSSPEFTYARA--EKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALV  289 (372)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHHHHH--HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCCHHHHH--HHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHh
Confidence            35678999999999999999777766  45555532111       111222 2222  2345566 8899999999999


Q ss_pred             hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHH
Q 017383          130 LRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE  186 (372)
Q Consensus       130 ~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~  186 (372)
                      .|++++|+..+++|+.++|+ ..+|..+|.++...|++++|++.|++|+.++|..+.
T Consensus       290 ~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t  345 (372)
T 3ly7_A          290 KGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT  345 (372)
T ss_dssp             HTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred             CCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence            99999999999999999975 778899999999999999999999999999998753

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.83  E-value=4.3e-08  Score=97.36  Aligned_cols=100  Identities=12%  Similarity=0.054  Sum_probs=86.2

Q ss_pred             HHHHHHHHhhcHHHHHHHHHHHHccC-----CC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CCCC---H
Q 017383           89 ELGNECFKQKKFKEAIDCYSRSIALS-----PT----AVAYANRAMAYLKLRRFQEAEDDCTEALNL-----DDRY---I  151 (372)
Q Consensus        89 ~~g~~~~~~g~~~~Ai~~y~~al~~~-----p~----~~~~~~la~~~~~~g~~~eA~~~~~~Al~l-----~p~~---~  151 (372)
                      ..+..+..+|+|++|+..|+++|++.     |+    +..+.++|.+|..+|+|++|+..+++++.+     .|++   .
T Consensus       314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a  393 (490)
T 3n71_A          314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLG  393 (490)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence            44556778999999999999999862     32    788999999999999999999999999976     3444   6


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcc-----CCCcHHHH
Q 017383          152 KAYSRRATARKELGKLKESIEDSEFALRL-----EPQNQEIK  188 (372)
Q Consensus       152 ~a~~~lg~~~~~lg~~~~A~~~~~~al~l-----~P~~~~~~  188 (372)
                      ..++++|.+|..+|+|++|+..|++|+.+     .|+++...
T Consensus       394 ~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~  435 (490)
T 3n71_A          394 MAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITK  435 (490)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHH
Confidence            67999999999999999999999999974     68887764

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.82  E-value=3.5e-09  Score=102.15  Aligned_cols=163  Identities=8%  Similarity=-0.006  Sum_probs=123.0

Q ss_pred             HHHHHHHHHHHHHhhhcCCCCCccccccc---cc-----cCCCCCCCC-CCCCchhhHHHHHhhhhcCCCCchH----HH
Q 017383           20 QDWDLSLNEKDKKMKHKASSKDNLVSSSL---KS-----AKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDA----TS   86 (372)
Q Consensus        20 ~~~e~~ik~~~~~l~~~~~~~~~~~~~~~---~~-----~~~~~~~~y-~~g~~~~A~~~~~~al~~~p~~~~a----~~   86 (372)
                      ++|+++++.....+...+...........   ..     +...+|..| ..|++++|+++|.+++...+....+    ..
T Consensus        18 ~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~   97 (434)
T 4b4t_Q           18 KQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVL   97 (434)
T ss_dssp             TCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHH
Confidence            67777777777766544422111100000   00     002344555 7899999999999999877665443    34


Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHccCCC-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc------CCCCHHH
Q 017383           87 EKELGNECFKQKKFKEAIDCYSRSIALSPT-------AVAYANRAMAYLKLRRFQEAEDDCTEALNL------DDRYIKA  153 (372)
Q Consensus        87 ~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-------~~~~~~la~~~~~~g~~~eA~~~~~~Al~l------~p~~~~a  153 (372)
                      ...+|.++...|+++.|+.+|.+++...+.       +.++.++|.+|...|+|.+|+..+.+++..      .+....+
T Consensus        98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~  177 (434)
T 4b4t_Q           98 KTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDV  177 (434)
T ss_dssp             HHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHH
Confidence            567888888999999999999999986422       788999999999999999999999999875      3445788


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 017383          154 YSRRATARKELGKLKESIEDSEFALRLEP  182 (372)
Q Consensus       154 ~~~lg~~~~~lg~~~~A~~~~~~al~l~P  182 (372)
                      +..+|.++..+|++++|...+++++.+.+
T Consensus       178 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~  206 (434)
T 4b4t_Q          178 HLLESKVYHKLRNLAKSKASLTAARTAAN  206 (434)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999998753

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.78  E-value=2.6e-08  Score=95.89  Aligned_cols=121  Identities=15%  Similarity=-0.004  Sum_probs=104.4

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchH---------------HHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-------H
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDA---------------TSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------A  117 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a---------------~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-------~  117 (372)
                      ..|+|++|++.|.+++...+...+.               .++..+|.+|+..|+|++|+.+|.+++...+.       .
T Consensus        16 ~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~   95 (434)
T 4b4t_Q           16 NEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVK   95 (434)
T ss_dssp             HHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHH
Confidence            5689999999999999988775331               24779999999999999999999999987654       3


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 017383          118 VAYANRAMAYLKLRRFQEAEDDCTEALNLD------DRYIKAYSRRATARKELGKLKESIEDSEFALRL  180 (372)
Q Consensus       118 ~~~~~la~~~~~~g~~~eA~~~~~~Al~l~------p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l  180 (372)
                      .++.++|.++...|++++|+..++.++...      +....++.++|.++...|+|++|...+++++..
T Consensus        96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~  164 (434)
T 4b4t_Q           96 VLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLRE  164 (434)
T ss_dssp             HHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence            567788999999999999999999998764      334788999999999999999999999999865

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.77  E-value=4.8e-08  Score=105.66  Aligned_cols=105  Identities=21%  Similarity=0.273  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC------------------
Q 017383           87 EKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDD------------------  148 (372)
Q Consensus        87 ~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p------------------  148 (372)
                      +..+|..|+..|+|++|+.+|.++       ..|..+|.||.++|++++|++.+.+|....+                  
T Consensus      1198 ~~~iGd~le~eg~YeeA~~~Y~kA-------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~ 1270 (1630)
T 1xi4_A         1198 IQQVGDRCYDEKMYDAAKLLYNNV-------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQ 1270 (1630)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHhh-------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHH
Confidence            445666666677777777776664       4677778888888888888888877744332                  


Q ss_pred             -------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHH
Q 017383          149 -------RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLY  198 (372)
Q Consensus       149 -------~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~~  198 (372)
                             .+++.+..++..|...|.+++|+..|+.+|.+++.+...+..+..+...|
T Consensus      1271 ~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy 1327 (1630)
T 1xi4_A         1271 MCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 1327 (1630)
T ss_pred             HHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhC
Confidence                   13334556667777888888888888888888887776665555444433

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.76  E-value=6.8e-08  Score=75.00  Aligned_cols=72  Identities=13%  Similarity=0.056  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHccC-------CC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 017383           87 EKELGNECFKQKKFKEAIDCYSRSIALS-------PT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRA  158 (372)
Q Consensus        87 ~~~~g~~~~~~g~~~~Ai~~y~~al~~~-------p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg  158 (372)
                      ++.+|..++..|+|..|+.+|+.|+...       +. ..++.++|.|++++|+++.|+..+++++.++|++..+..+++
T Consensus         8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~   87 (104)
T 2v5f_A            8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK   87 (104)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence            4566666666666666666666666542       11 455555555555555555555555555555555555555544

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.76  E-value=1.2e-07  Score=73.60  Aligned_cols=78  Identities=15%  Similarity=0.065  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHH
Q 017383          117 AVAYANRAMAYLKLRRFQEAEDDCTEALNLD-------DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKK  189 (372)
Q Consensus       117 ~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~-------p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~  189 (372)
                      +.-++.+|..++..|+|..|+.+|+.|+...       +....++..+|.++..+|+++.|+..++++++++|++..+..
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~   84 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence            4567899999999999999999999999863       346888999999999999999999999999999999998877


Q ss_pred             HHHHH
Q 017383          190 QLAEV  194 (372)
Q Consensus       190 ~l~~a  194 (372)
                      ++...
T Consensus        85 n~~~~   89 (104)
T 2v5f_A           85 NLKYF   89 (104)
T ss_dssp             HHHHH
T ss_pred             hHHHH
Confidence            66533

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.72  E-value=1.3e-07  Score=72.10  Aligned_cols=71  Identities=21%  Similarity=0.123  Sum_probs=64.6

Q ss_pred             CCC-HHHHHHHHHHHHHhcC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCc
Q 017383          114 SPT-AVAYANRAMAYLKLRR---FQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN  184 (372)
Q Consensus       114 ~p~-~~~~~~la~~~~~~g~---~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~  184 (372)
                      +|+ +.++..+|.+++..++   ..+|...+++|+.++|+++.+++.+|..++..|+|++|+..|++++..+|.+
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~   76 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN   76 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            455 8889999999987666   7999999999999999999999999999999999999999999999999984

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.70  E-value=9.4e-08  Score=93.44  Aligned_cols=95  Identities=8%  Similarity=-0.030  Sum_probs=81.4

Q ss_pred             HHhhcHHHHHHHHHHHHcc-----CCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CCCC---HHHHHHH
Q 017383           95 FKQKKFKEAIDCYSRSIAL-----SPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNL-----DDRY---IKAYSRR  157 (372)
Q Consensus        95 ~~~g~~~~Ai~~y~~al~~-----~p~----~~~~~~la~~~~~~g~~~eA~~~~~~Al~l-----~p~~---~~a~~~l  157 (372)
                      ...|+|++|+..|+++|++     .|+    +..+.++|.+|..+|+|++|+..+++++.+     .|++   +..++++
T Consensus       309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL  388 (433)
T 3qww_A          309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL  388 (433)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence            3467899999999999985     233    788999999999999999999999999976     3444   6679999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHcc-----CCCcHHHHH
Q 017383          158 ATARKELGKLKESIEDSEFALRL-----EPQNQEIKK  189 (372)
Q Consensus       158 g~~~~~lg~~~~A~~~~~~al~l-----~P~~~~~~~  189 (372)
                      |.+|..+|++++|+..|++|+.+     .|+++....
T Consensus       389 a~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~  425 (433)
T 3qww_A          389 GRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE  425 (433)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred             HHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence            99999999999999999999975     578776543

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.70  E-value=1.3e-07  Score=92.50  Aligned_cols=101  Identities=11%  Similarity=0.054  Sum_probs=85.7

Q ss_pred             HHHHHHHHhhcHHHHHHHHHHHHccC-----CC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CCCC---H
Q 017383           89 ELGNECFKQKKFKEAIDCYSRSIALS-----PT----AVAYANRAMAYLKLRRFQEAEDDCTEALNL-----DDRY---I  151 (372)
Q Consensus        89 ~~g~~~~~~g~~~~Ai~~y~~al~~~-----p~----~~~~~~la~~~~~~g~~~eA~~~~~~Al~l-----~p~~---~  151 (372)
                      .....+..+|+|++|+..|++++++.     |+    +.++.++|.+|..+|+|++|+..+++++.+     .|++   .
T Consensus       292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a  371 (429)
T 3qwp_A          292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG  371 (429)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence            33445678999999999999999863     33    788999999999999999999999999976     3444   6


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcc-----CCCcHHHHH
Q 017383          152 KAYSRRATARKELGKLKESIEDSEFALRL-----EPQNQEIKK  189 (372)
Q Consensus       152 ~a~~~lg~~~~~lg~~~~A~~~~~~al~l-----~P~~~~~~~  189 (372)
                      ..++++|.+|..+|++++|+..|++|+.+     .|+++....
T Consensus       372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~  414 (429)
T 3qwp_A          372 VQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED  414 (429)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence            67999999999999999999999999974     688876643

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.69  E-value=1.5e-07  Score=92.48  Aligned_cols=117  Identities=12%  Similarity=0.057  Sum_probs=96.6

Q ss_pred             HHHHHhhhhcCCCCchHHHHHHHHHHHHHhh---cHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHh----cCHHHHHHH
Q 017383           68 VSHISSSLMNEESTPDATSEKELGNECFKQK---KFKEAIDCYSRSIALSPT-AVAYANRAMAYLKL----RRFQEAEDD  139 (372)
Q Consensus        68 ~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g---~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~----g~~~eA~~~  139 (372)
                      ..++..+...+|   .  +++.+|.+|...|   ++++|+.+|+++++..+. +..++++|.+|...    +++++|+.+
T Consensus       165 ~~~~~~a~~~~~---~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~  239 (452)
T 3e4b_A          165 ERICKAALNTTD---I--CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQAL  239 (452)
T ss_dssp             HHHHHHHTTTCT---T--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHH
T ss_pred             HHHHHHHHcCCH---H--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence            334444444444   3  4679999999999   999999999999999887 88889999999776    799999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHH
Q 017383          140 CTEALNLDDRYIKAYSRRATA-R--KELGKLKESIEDSEFALRLEPQNQEIKKQLAEV  194 (372)
Q Consensus       140 ~~~Al~l~p~~~~a~~~lg~~-~--~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a  194 (372)
                      |+++.   |.++.+++++|.+ +  ...|++++|+.+|+++....  +..+...++.+
T Consensus       240 ~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~  292 (452)
T 3e4b_A          240 LEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD--QPRAELLLGKL  292 (452)
T ss_dssp             HHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT--CHHHHHHHHHH
T ss_pred             HHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHH
Confidence            99998   9999999999998 4  57899999999999998654  66666555544

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.69  E-value=2.6e-07  Score=85.88  Aligned_cols=115  Identities=8%  Similarity=-0.050  Sum_probs=73.2

Q ss_pred             hHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCC--C-HHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 017383           67 PVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSP--T-AVAYANRAMAYLKLRRFQEAEDDCTEA  143 (372)
Q Consensus        67 A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p--~-~~~~~~la~~~~~~g~~~eA~~~~~~A  143 (372)
                      |+..+++.+...+....+  +..+|.++...|++++|+.++.++|..+|  . ..++..++.+++.+|+.+.|.+.+++.
T Consensus        85 a~~~l~~l~~~~~~~~~~--~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~  162 (310)
T 3mv2_B           85 NIEELENLLKDKQNSPYE--LYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY  162 (310)
T ss_dssp             CCHHHHHTTTTSCCCHHH--HHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcHH--HHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            566777766654332222  34677777777777777777777777765  3 666777777777777777777777777


Q ss_pred             HhcCCC----CHHHHHHH--HHHHHHcC--CHHHHHHHHHHHHccCCC
Q 017383          144 LNLDDR----YIKAYSRR--ATARKELG--KLKESIEDSEFALRLEPQ  183 (372)
Q Consensus       144 l~l~p~----~~~a~~~l--g~~~~~lg--~~~~A~~~~~~al~l~P~  183 (372)
                      .+.+|+    +-.....+  |++....|  ++.+|...|+++....|+
T Consensus       163 ~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~  210 (310)
T 3mv2_B          163 TNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPT  210 (310)
T ss_dssp             HHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCS
T ss_pred             HhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCC
Confidence            777762    12222333  33344445  677777777777666665

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.67  E-value=3e-07  Score=85.48  Aligned_cols=126  Identities=8%  Similarity=-0.079  Sum_probs=89.3

Q ss_pred             CCCCchhhHHHHHhhhhcCC--CCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCC-----CHHHHHHHH--HHHHHh
Q 017383           60 SYSRNYDPVSHISSSLMNEE--STPDATSEKELGNECFKQKKFKEAIDCYSRSIALSP-----TAVAYANRA--MAYLKL  130 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p--~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p-----~~~~~~~la--~~~~~~  130 (372)
                      ..|++++|+..+.+++..+|  ...++..  ..+.++.+.|+.+.|...+++..+.+|     +-.+..+++  .+.+..
T Consensus       112 ~~g~~eeAL~~l~~~i~~~~~~~~lea~~--l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~  189 (310)
T 3mv2_B          112 ILGDLDKSLETCVEGIDNDEAEGTTELLL--LAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFAT  189 (310)
T ss_dssp             HHTCHHHHHHHHHHHHTSSCSTTHHHHHH--HHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHhccCCCcCcHHHHH--HHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHh
Confidence            56888888888888888776  7555544  778888888888888888888888887     233344444  335555


Q ss_pred             c--CHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHcc----------CCCcHHHHHH
Q 017383          131 R--RFQEAEDDCTEALNLDDRY--IKAYSRRATARKELGKLKESIEDSEFALRL----------EPQNQEIKKQ  190 (372)
Q Consensus       131 g--~~~eA~~~~~~Al~l~p~~--~~a~~~lg~~~~~lg~~~~A~~~~~~al~l----------~P~~~~~~~~  190 (372)
                      |  ++.+|...|+++....|+.  ...+++   ++..+|++++|...++.++++          +|+++++..+
T Consensus       190 g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN  260 (310)
T 3mv2_B          190 NKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLAN  260 (310)
T ss_dssp             TCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHH
Confidence            6  7888888888887777763  333333   788888888888888877776          4777776533

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.65  E-value=3e-07  Score=89.38  Aligned_cols=129  Identities=13%  Similarity=0.089  Sum_probs=96.6

Q ss_pred             CCCCCCC-CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHhc
Q 017383           53 KPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLR  131 (372)
Q Consensus        53 ~~~~~~y-~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~~la~~~~~~g  131 (372)
                      ..+|+.| ..|.|++|..+|.++    +      .+..+|.++++.|+|++|+++|.++    .++.+|...+.++...|
T Consensus       126 ~~IGd~~~~~g~yeeA~~~Y~~a----~------n~~~LA~~L~~Lg~yq~AVea~~KA----~~~~~Wk~v~~aCv~~~  191 (449)
T 1b89_A          126 QQVGDRCYDEKMYDAAKLLYNNV----S------NFGRLASTLVHLGEYQAAVDGARKA----NSTRTWKEVCFACVDGK  191 (449)
T ss_dssp             -----------CTTTHHHHHHHT----T------CHHHHHHHHHTTTCHHHHHHHHHHH----TCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHh----h------hHHHHHHHHHHhccHHHHHHHHHHc----CCchhHHHHHHHHHHcC
Confidence            5667665 788999999999877    1      2568899999999999999999988    24788888888888999


Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHH
Q 017383          132 RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYE  199 (372)
Q Consensus       132 ~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~~~  199 (372)
                      +|+.|..+... |..+|++   ...+...|...|++++|+..+++++.+++.+..++..++.+...|+
T Consensus       192 ef~lA~~~~l~-L~~~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~  255 (449)
T 1b89_A          192 EFRLAQMCGLH-IVVHADE---LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK  255 (449)
T ss_dssp             CHHHHHHTTTT-TTTCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHH-HHhCHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcC
Confidence            99999766654 4445544   4467889999999999999999999999999998888877665553

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.58  E-value=1.4e-07  Score=92.21  Aligned_cols=94  Identities=13%  Similarity=0.088  Sum_probs=79.9

Q ss_pred             CCCCchhhHHHHHhhhh-----cCCCCch-HHHHHHHHHHHHHhhcHHHHHHHHHHHHcc-----CC---C-HHHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLM-----NEESTPD-ATSEKELGNECFKQKKFKEAIDCYSRSIAL-----SP---T-AVAYANRA  124 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~-----~~p~~~~-a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~-----~p---~-~~~~~~la  124 (372)
                      ..|+|++|+..|+++|+     +.|+++. +..+.++|.+|..+|+|++|+.+|+++|++     -|   + +..++|+|
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            45899999999999997     3455443 567889999999999999999999999986     23   3 78899999


Q ss_pred             HHHHHhcCHHHHHHHHHHHHhc-----CCCCHHH
Q 017383          125 MAYLKLRRFQEAEDDCTEALNL-----DDRYIKA  153 (372)
Q Consensus       125 ~~~~~~g~~~eA~~~~~~Al~l-----~p~~~~a  153 (372)
                      .+|..+|+|++|+..|++|+.+     .|+++.+
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~  423 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI  423 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence            9999999999999999999985     5777654

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.55  E-value=4.9e-07  Score=74.87  Aligned_cols=98  Identities=9%  Similarity=0.016  Sum_probs=84.0

Q ss_pred             CCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhh---cHHHHHHHHHHHHccC-C-C-HHHHHHHHHHHHHhcCHHH
Q 017383           62 SRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQK---KFKEAIDCYSRSIALS-P-T-AVAYANRAMAYLKLRRFQE  135 (372)
Q Consensus        62 g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g---~~~~Ai~~y~~al~~~-p-~-~~~~~~la~~~~~~g~~~e  135 (372)
                      .....+...|.+.+..++.+  ..+.+++|.++.+.+   ++++++..++..++.+ | + .++++++|..|+++|+|++
T Consensus        12 ~~l~~~~~~y~~e~~~~~~~--~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~   89 (152)
T 1pc2_A           12 EDLLKFEKKFQSEKAAGSVS--KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK   89 (152)
T ss_dssp             HHHHHHHHHHHHHHHTTCCC--HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred             HHHHHHHHHHHHHHccCCCc--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHH
Confidence            45566788888888887764  444779999999977   8889999999999999 7 3 8999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHH
Q 017383          136 AEDDCTEALNLDDRYIKAYSRRATAR  161 (372)
Q Consensus       136 A~~~~~~Al~l~p~~~~a~~~lg~~~  161 (372)
                      |..+++++|+++|++..+...+..+-
T Consensus        90 A~~y~~~lL~ieP~n~QA~~Lk~~ie  115 (152)
T 1pc2_A           90 ALKYVRGLLQTEPQNNQAKELERLID  115 (152)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            99999999999999988876655443

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.52  E-value=1.4e-06  Score=82.58  Aligned_cols=135  Identities=14%  Similarity=0.044  Sum_probs=101.9

Q ss_pred             hhhcCCCCchHHHHHHHHHHHHHh---hcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCH-------HHHHH-HHH
Q 017383           74 SLMNEESTPDATSEKELGNECFKQ---KKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRF-------QEAED-DCT  141 (372)
Q Consensus        74 al~~~p~~~~a~~~~~~g~~~~~~---g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~-------~eA~~-~~~  141 (372)
                      +....|.+..++-++.+|..++..   ..+.+|+.+|++|++++|+ +.+|..++.||.....+       ..++. .+.
T Consensus       186 ~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~  265 (372)
T 3ly7_A          186 LQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEID  265 (372)
T ss_dssp             HHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred             HhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHH
Confidence            334567777888888899888765   4568999999999999999 88999899988643221       11111 222


Q ss_pred             --HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHH----------HHHHHHHHHHHHHHHhhhhhH
Q 017383          142 --EALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK----------KQLAEVKSLYEKEVFQKASKT  209 (372)
Q Consensus       142 --~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~----------~~l~~a~~~~~~~~~~~~~~~  209 (372)
                        .++.++|..+.+|..+|.++...|++++|+..+++|+.++|+. .++          ++..+|...|.+++..+|...
T Consensus       266 a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~-~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~  344 (372)
T 3ly7_A          266 NIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSW-LNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN  344 (372)
T ss_dssp             HHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred             HHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence              2346789999999999999999999999999999999999864 332          556677777777777776554

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.52  E-value=2.9e-07  Score=89.95  Aligned_cols=105  Identities=9%  Similarity=0.024  Sum_probs=85.3

Q ss_pred             CCCCchhhHHHHHhhhhcC-----CCCc-hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccC-----CC----HHHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNE-----ESTP-DATSEKELGNECFKQKKFKEAIDCYSRSIALS-----PT----AVAYANRA  124 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~-----p~~~-~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~-----p~----~~~~~~la  124 (372)
                      ..|+|++|+..|+++|++.     |.++ .+..+.++|.+|..+|+|++|+.+|+++|.+.     |+    +..++++|
T Consensus       299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa  378 (429)
T 3qwp_A          299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVG  378 (429)
T ss_dssp             HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHH
Confidence            5689999999999999753     3333 35568899999999999999999999999862     33    78899999


Q ss_pred             HHHHHhcCHHHHHHHHHHHHhc-----CCCCH---HHHHHHHHHHHHc
Q 017383          125 MAYLKLRRFQEAEDDCTEALNL-----DDRYI---KAYSRRATARKEL  164 (372)
Q Consensus       125 ~~~~~~g~~~eA~~~~~~Al~l-----~p~~~---~a~~~lg~~~~~l  164 (372)
                      .+|..+|++++|+..+++|+.+     .|+++   .++.+++.++..+
T Consensus       379 ~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          379 KLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence            9999999999999999999975     56664   4455666666543

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.48  E-value=1.6e-06  Score=79.12  Aligned_cols=86  Identities=15%  Similarity=0.084  Sum_probs=79.7

Q ss_pred             cHHHHHHHHHHHHccCCC---HHHHHHHHHHHHHh-----cCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHH-cCCHH
Q 017383           99 KFKEAIDCYSRSIALSPT---AVAYANRAMAYLKL-----RRFQEAEDDCTEALNLDDRY-IKAYSRRATARKE-LGKLK  168 (372)
Q Consensus        99 ~~~~Ai~~y~~al~~~p~---~~~~~~la~~~~~~-----g~~~eA~~~~~~Al~l~p~~-~~a~~~lg~~~~~-lg~~~  168 (372)
                      ....|...+++++++||+   ..+|..+|..|...     |+.++|..+|++|++++|+. ..+++..|..+.. .|+++
T Consensus       178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~  257 (301)
T 3u64_A          178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA  257 (301)
T ss_dssp             HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred             hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence            468899999999999999   77999999999996     99999999999999999975 9999999999988 59999


Q ss_pred             HHHHHHHHHHccCCCc
Q 017383          169 ESIEDSEFALRLEPQN  184 (372)
Q Consensus       169 ~A~~~~~~al~l~P~~  184 (372)
                      +|...+++++...|..
T Consensus       258 ~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          258 GFDEALDRALAIDPES  273 (301)
T ss_dssp             HHHHHHHHHHHCCGGG
T ss_pred             HHHHHHHHHHcCCCCC
Confidence            9999999999988763

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.40  E-value=5e-06  Score=66.43  Aligned_cols=102  Identities=13%  Similarity=0.033  Sum_probs=85.2

Q ss_pred             HHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHH---HHHHHHHHHhcC-C-CCHHHHHHHHHHHHHcCCHH
Q 017383           95 FKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQE---AEDDCTEALNLD-D-RYIKAYSRRATARKELGKLK  168 (372)
Q Consensus        95 ~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~e---A~~~~~~Al~l~-p-~~~~a~~~lg~~~~~lg~~~  168 (372)
                      ........+...|.+.+..++. ..+.+++|.++.+.++...   ++..++..+.-+ | ..-+++|.+|..++.+|+|+
T Consensus        12 ~~~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~   91 (126)
T 1nzn_A           12 VSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYE   91 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             CCHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHH
Confidence            3455666777888888776654 9999999999999887776   999999998877 5 56889999999999999999


Q ss_pred             HHHHHHHHHHccCCCcHHHHHHHHHHHH
Q 017383          169 ESIEDSEFALRLEPQNQEIKKQLAEVKS  196 (372)
Q Consensus       169 ~A~~~~~~al~l~P~~~~~~~~l~~a~~  196 (372)
                      +|..+++.+|+++|+|.++......+..
T Consensus        92 ~A~~~~~~lL~~eP~n~QA~~Lk~~i~~  119 (126)
T 1nzn_A           92 KALKYVRGLLQTEPQNNQAKELERLIDK  119 (126)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            9999999999999999998765544433

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.39  E-value=2.5e-06  Score=92.54  Aligned_cols=141  Identities=8%  Similarity=0.097  Sum_probs=90.7

Q ss_pred             hHHHHHHHHhhHHHHHHHHHHHHHHhhhcCCCCCccccccccccCCCCCCCC-CCCCchhhHHHHHhhhhcCCCCchHHH
Q 017383            8 QALDFQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATS   86 (372)
Q Consensus         8 n~~~l~~~~~~l~~~e~~ik~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~~A~~~~~~al~~~p~~~~a~~   86 (372)
                      +.+.+.-++..+++|+++++-+++.-      ..        ..+...|.++ ..|++.+|+..|.++     +++++  
T Consensus      1078 ~~~A~~VLie~i~nldrAiE~Aervn------~p--------~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~sa-- 1136 (1630)
T 1xi4_A         1078 NTSAVQVLIEHIGNLDRAYEFAERCN------EP--------AVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSS-- 1136 (1630)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHhcC------CH--------HHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHH--
Confidence            33445555566666666665544210      00        0012333344 678899999999776     33334  


Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHccCCCH----------------------------HHHHHHHHHHHHhcCHHHHHH
Q 017383           87 EKELGNECFKQKKFKEAIDCYSRSIALSPTA----------------------------VAYANRAMAYLKLRRFQEAED  138 (372)
Q Consensus        87 ~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~~----------------------------~~~~~la~~~~~~g~~~eA~~  138 (372)
                      +...|.++.+.|+|++|+++|..|.+..+.+                            ..+.++|.++...|+|++|+.
T Consensus      1137 y~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~ 1216 (1630)
T 1xi4_A         1137 YMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKL 1216 (1630)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence            6688999999999999999998888665331                            234456666666666666666


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 017383          139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFA  177 (372)
Q Consensus       139 ~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~a  177 (372)
                      +|.+|        ..|.++|.++..+|++++|++.+++|
T Consensus      1217 ~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA 1247 (1630)
T 1xi4_A         1217 LYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA 1247 (1630)
T ss_pred             HHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence            66664        36677777777777777777777777

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.37  E-value=1.6e-06  Score=65.89  Aligned_cols=71  Identities=21%  Similarity=0.135  Sum_probs=62.6

Q ss_pred             CCCCchHHHHHHHHHHHHHhhc---HHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 017383           78 EESTPDATSEKELGNECFKQKK---FKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY  150 (372)
Q Consensus        78 ~p~~~~a~~~~~~g~~~~~~g~---~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~  150 (372)
                      +|.+++.  +..+|.+++..++   .++|...++++++++|+ ..+++.+|..++..|+|++|+..+++++..+|..
T Consensus         2 ~p~~~~~--~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~   76 (93)
T 3bee_A            2 NAVTATQ--LAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN   76 (93)
T ss_dssp             CCCCHHH--HHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred             CCCCHHH--HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            4554444  6688999876665   79999999999999999 9999999999999999999999999999999984

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.27  E-value=9e-06  Score=66.15  Aligned_cols=90  Identities=16%  Similarity=0.055  Sum_probs=78.1

Q ss_pred             hhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHH
Q 017383           97 QKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKE----LGKLKESI  171 (372)
Q Consensus        97 ~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~----lg~~~~A~  171 (372)
                      .+++++|+.+|+++.+.... +.    +|.+|...+.+++|+.+|++|.+.  .++.+++++|.+|..    .+++++|+
T Consensus         8 ~~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~   81 (138)
T 1klx_A            8 KKDLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA   81 (138)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             ccCHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence            47899999999999988643 43    999999999999999999999987  789999999999999    89999999


Q ss_pred             HHHHHHHccCCCcHHHHHHHHHH
Q 017383          172 EDSEFALRLEPQNQEIKKQLAEV  194 (372)
Q Consensus       172 ~~~~~al~l~P~~~~~~~~l~~a  194 (372)
                      .+|+++...  +++.+...|..+
T Consensus        82 ~~~~~Aa~~--g~~~a~~~Lg~~  102 (138)
T 1klx_A           82 QYYSKACGL--NDQDGCLILGYK  102 (138)
T ss_dssp             HHHHHHHHT--TCHHHHHHHHHH
T ss_pred             HHHHHHHcC--CCHHHHHHHHHH
Confidence            999999987  566666555544

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.25  E-value=3.2e-07  Score=89.18  Aligned_cols=77  Identities=16%  Similarity=0.260  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 017383           87 EKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGK  166 (372)
Q Consensus        87 ~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~  166 (372)
                      +..+|..|+..|+|++|+.+|.++       ..|..+|.|+.++|+|++|++.+.+|     +++.+|...+.++...|+
T Consensus       125 ~~~IGd~~~~~g~yeeA~~~Y~~a-------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~e  192 (449)
T 1b89_A          125 IQQVGDRCYDEKMYDAAKLLYNNV-------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKE  192 (449)
T ss_dssp             ------------CTTTHHHHHHHT-------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHh-------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCc
Confidence            344444444455555555544443       23444455555555555555555544     234444444455555555


Q ss_pred             HHHHHHHHH
Q 017383          167 LKESIEDSE  175 (372)
Q Consensus       167 ~~~A~~~~~  175 (372)
                      ++.|..+..
T Consensus       193 f~lA~~~~l  201 (449)
T 1b89_A          193 FRLAQMCGL  201 (449)
T ss_dssp             HHHHHHTTT
T ss_pred             HHHHHHHHH
Confidence            555544433

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.10  E-value=6.1e-06  Score=75.40  Aligned_cols=91  Identities=11%  Similarity=-0.045  Sum_probs=81.3

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHh-----hcHHHHHHHHHHHHccCCC--HHHHHHHHHHHHH-hc
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQ-----KKFKEAIDCYSRSIALSPT--AVAYANRAMAYLK-LR  131 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~-----g~~~~Ai~~y~~al~~~p~--~~~~~~la~~~~~-~g  131 (372)
                      ..+....|...++++++++|+..+..+|..+|..|...     |+.++|..+|++||+++|+  ..+++..|..++. +|
T Consensus       175 Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~g  254 (301)
T 3u64_A          175 LPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLN  254 (301)
T ss_dssp             CHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTT
T ss_pred             HHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcC
Confidence            44677889999999999999966666677999999984     9999999999999999996  8999999999988 59


Q ss_pred             CHHHHHHHHHHHHhcCCCC
Q 017383          132 RFQEAEDDCTEALNLDDRY  150 (372)
Q Consensus       132 ~~~eA~~~~~~Al~l~p~~  150 (372)
                      ++++|...+++|+..+|..
T Consensus       255 d~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          255 NRAGFDEALDRALAIDPES  273 (301)
T ss_dssp             CHHHHHHHHHHHHHCCGGG
T ss_pred             CHHHHHHHHHHHHcCCCCC
Confidence            9999999999999998874

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.94  E-value=0.00016  Score=57.86  Aligned_cols=83  Identities=12%  Similarity=0.044  Sum_probs=68.2

Q ss_pred             CCCHHHHHHHHHHHHHhcCH---HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHH
Q 017383          114 SPTAVAYANRAMAYLKLRRF---QEAEDDCTEALNLDDR-YIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKK  189 (372)
Q Consensus       114 ~p~~~~~~~la~~~~~~g~~---~eA~~~~~~Al~l~p~-~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~  189 (372)
                      .|...+.+++|.|+.+..+.   .+++..++..++.+|. .-+.++.+|..++.+|+|++|..+.+.+|+++|+|.++..
T Consensus        37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~  116 (134)
T 3o48_A           37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  116 (134)
T ss_dssp             GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred             CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence            34588888899888887754   4688999999888884 5888999999999999999999999999999999988875


Q ss_pred             HHHHHHH
Q 017383          190 QLAEVKS  196 (372)
Q Consensus       190 ~l~~a~~  196 (372)
                      ....+..
T Consensus       117 Lk~~Ie~  123 (134)
T 3o48_A          117 LKSMVED  123 (134)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5444433

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.94  E-value=6.9e-05  Score=77.17  Aligned_cols=112  Identities=14%  Similarity=0.021  Sum_probs=62.0

Q ss_pred             hHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHH-HHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 017383           67 PVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAI-DCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEAL  144 (372)
Q Consensus        67 A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai-~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al  144 (372)
                      ....|+++|...|..++.  |...+..+...|+.++|+ ..|.+|+...|. ..+|...+......|+++.|...|++++
T Consensus       328 v~~~Ye~aL~~~p~~~~l--W~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l  405 (679)
T 4e6h_A          328 MTYVYMQAAQHVCFAPEI--WFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI  405 (679)
T ss_dssp             HHHHHHHHHHHTTTCHHH--HHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHH--HHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            345566666666654333  345555555556655665 666666666665 5555556666666666666666666665


Q ss_pred             hc-----------CCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 017383          145 NL-----------DDR-----------YIKAYSRRATARKELGKLKESIEDSEFALRL  180 (372)
Q Consensus       145 ~l-----------~p~-----------~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l  180 (372)
                      ..           .|.           ...+|...+......|..+.|...|.+|++.
T Consensus       406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~  463 (679)
T 4e6h_A          406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL  463 (679)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT
T ss_pred             HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            43           131           2334555555555555555555555555544

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.87  E-value=0.00034  Score=56.76  Aligned_cols=81  Identities=12%  Similarity=0.038  Sum_probs=68.1

Q ss_pred             CCCHHHHHHHHHHHHHhcCH---HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHH
Q 017383          114 SPTAVAYANRAMAYLKLRRF---QEAEDDCTEALNLDDR-YIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKK  189 (372)
Q Consensus       114 ~p~~~~~~~la~~~~~~g~~---~eA~~~~~~Al~l~p~-~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~  189 (372)
                      .|...+.+++|.|+.+..+.   .+++..++..+...|. .-+.+|.+|..++.+|+|++|..+.+.+|+++|+|.++..
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~  115 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  115 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence            35588889999999888754   4688999999988884 5788999999999999999999999999999999988865


Q ss_pred             HHHHH
Q 017383          190 QLAEV  194 (372)
Q Consensus       190 ~l~~a  194 (372)
                      ....+
T Consensus       116 Lk~~I  120 (144)
T 1y8m_A          116 LKSMV  120 (144)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44433

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.84  E-value=0.00012  Score=58.38  Aligned_cols=94  Identities=9%  Similarity=-0.009  Sum_probs=76.5

Q ss_pred             hhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHH---HHHHHHHHHccC-CC--HHHHHHHHHHHHHhcCHHHHHHH
Q 017383           66 DPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKE---AIDCYSRSIALS-PT--AVAYANRAMAYLKLRRFQEAEDD  139 (372)
Q Consensus        66 ~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~---Ai~~y~~al~~~-p~--~~~~~~la~~~~~~g~~~eA~~~  139 (372)
                      .+...|.+.+..++...++  .+++|+++.+.++-.+   +|..++..+..+ |.  -..++.+|..++++|+|.+|..+
T Consensus        19 ~~~~~y~~e~~~~~~s~~~--~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~   96 (126)
T 1nzn_A           19 KFEKKFQSEKAAGSVSKST--QFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY   96 (126)
T ss_dssp             HHHHHHHHHHHHSCCCHHH--HHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHhccCCCcHHH--HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            4456777777766554444  6688999988776655   999999999987 63  88899999999999999999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHH
Q 017383          140 CTEALNLDDRYIKAYSRRATAR  161 (372)
Q Consensus       140 ~~~Al~l~p~~~~a~~~lg~~~  161 (372)
                      ++..|+..|++..+......+-
T Consensus        97 ~~~lL~~eP~n~QA~~Lk~~i~  118 (126)
T 1nzn_A           97 VRGLLQTEPQNNQAKELERLID  118 (126)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHH
Confidence            9999999999988876665443

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.78  E-value=0.00014  Score=74.98  Aligned_cols=145  Identities=13%  Similarity=0.092  Sum_probs=115.5

Q ss_pred             CCCCchhhH-HHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccC-----------C-----------C
Q 017383           60 SYSRNYDPV-SHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALS-----------P-----------T  116 (372)
Q Consensus        60 ~~g~~~~A~-~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~-----------p-----------~  116 (372)
                      ..|+.++|. ..|.+++...|...  ..+...+......|+++.|...|++++...           |           .
T Consensus       355 ~~~~~~~a~r~il~rAi~~~P~s~--~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~  432 (679)
T 4e6h_A          355 EKNTDSTVITKYLKLGQQCIPNSA--VLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSK  432 (679)
T ss_dssp             HHSCCTTHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             hcCcHHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccc
Confidence            457888997 99999999999743  446678888899999999999999999752           4           1


Q ss_pred             -HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHccCCCcHHHHHH---
Q 017383          117 -AVAYANRAMAYLKLRRFQEAEDDCTEALNL-DDRYIKAYSRRATARKELGK-LKESIEDSEFALRLEPQNQEIKKQ---  190 (372)
Q Consensus       117 -~~~~~~la~~~~~~g~~~eA~~~~~~Al~l-~p~~~~a~~~lg~~~~~lg~-~~~A~~~~~~al~l~P~~~~~~~~---  190 (372)
                       ..+|...+......|..+.|...|.+|++. .+.....|...|.+....|+ ++.|...|+.+++..|+++..+..   
T Consensus       433 ~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~  512 (679)
T 4e6h_A          433 LTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLD  512 (679)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence             446788888888889999999999999998 55557778777877777655 999999999999999999888733   


Q ss_pred             -------HHHHHHHHHHHHHhhh
Q 017383          191 -------LAEVKSLYEKEVFQKA  206 (372)
Q Consensus       191 -------l~~a~~~~~~~~~~~~  206 (372)
                             ...|+..|++++...+
T Consensus       513 fe~~~~~~~~AR~lferal~~~~  535 (679)
T 4e6h_A          513 FLIYVNEESQVKSLFESSIDKIS  535 (679)
T ss_dssp             HHHHHTCHHHHHHHHHHHTTTSS
T ss_pred             HHHhCCCHHHHHHHHHHHHHhcC
Confidence                   3455666666665544

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.40  E-value=0.0005  Score=57.28  Aligned_cols=92  Identities=15%  Similarity=0.031  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHHHccC---CC-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-------
Q 017383           85 TSEKELGNECFKQKKFKEAIDCYSRSIALS---PT-------AVAYANRAMAYLKLRRFQEAEDDCTEALNLD-------  147 (372)
Q Consensus        85 ~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~---p~-------~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~-------  147 (372)
                      ++++.....++..|.|+.|+-.+..++.+.   |+       ..++..+|.+++..|+|..|...|++||.+.       
T Consensus        21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~  100 (167)
T 3ffl_A           21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS  100 (167)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence            345566666777777777777777765542   22       4466777777777777777777777776542       


Q ss_pred             ------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 017383          148 ------------------DRYIKAYSRRATARKELGKLKESIEDSEF  176 (372)
Q Consensus       148 ------------------p~~~~a~~~lg~~~~~lg~~~~A~~~~~~  176 (372)
                                        +...+..|.++.||..+|++++|+..++.
T Consensus       101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~  147 (167)
T 3ffl_A          101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG  147 (167)
T ss_dssp             ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             CccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence                              12236889999999999999999998765

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.40  E-value=0.0023  Score=52.36  Aligned_cols=108  Identities=18%  Similarity=0.043  Sum_probs=88.7

Q ss_pred             cCCCCchHHHHHHHHHHHHHhhcH------HHHHHHHHHHHccCCC---------HHHHHHHHHHHHHhcCHHHHHHHHH
Q 017383           77 NEESTPDATSEKELGNECFKQKKF------KEAIDCYSRSIALSPT---------AVAYANRAMAYLKLRRFQEAEDDCT  141 (372)
Q Consensus        77 ~~p~~~~a~~~~~~g~~~~~~g~~------~~Ai~~y~~al~~~p~---------~~~~~~la~~~~~~g~~~eA~~~~~  141 (372)
                      +.|++++.  |.......-+.|+.      +.-++.|++|+..-|-         ..+|.+.|.. ..+++.++|...|+
T Consensus         8 ~~p~~yd~--W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~   84 (161)
T 4h7y_A            8 MMANNPED--WLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQ   84 (161)
T ss_dssp             --CCSHHH--HHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHH
T ss_pred             eCCCCHHH--HHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHH
Confidence            45676666  44666666667887      8889999999987653         5566666744 67799999999999


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHH
Q 017383          142 EALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI  187 (372)
Q Consensus       142 ~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~  187 (372)
                      .|+.+...+++.|...|.--...|+...|...+.+++.+.|...+.
T Consensus        85 ~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~  130 (161)
T 4h7y_A           85 MARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM  130 (161)
T ss_dssp             HHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence            9999988899999999999999999999999999999999987653

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.38  E-value=0.0022  Score=51.30  Aligned_cols=80  Identities=6%  Similarity=0.005  Sum_probs=67.5

Q ss_pred             chHHHHHHHHHHHHHhh---cHHHHHHHHHHHHccCCC--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHH
Q 017383           82 PDATSEKELGNECFKQK---KFKEAIDCYSRSIALSPT--AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSR  156 (372)
Q Consensus        82 ~~a~~~~~~g~~~~~~g---~~~~Ai~~y~~al~~~p~--~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~  156 (372)
                      +...+.+++|.++.+..   +...+|..++..+..+|.  -+.++.+|..++++|+|.+|..+++..|+..|++..|...
T Consensus        38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L  117 (134)
T 3o48_A           38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL  117 (134)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred             CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence            34556778888887654   556799999999998885  8899999999999999999999999999999999888766


Q ss_pred             HHHHH
Q 017383          157 RATAR  161 (372)
Q Consensus       157 lg~~~  161 (372)
                      ...+-
T Consensus       118 k~~Ie  122 (134)
T 3o48_A          118 KSMVE  122 (134)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55543

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.32  E-value=0.0045  Score=50.12  Aligned_cols=79  Identities=6%  Similarity=0.004  Sum_probs=67.1

Q ss_pred             chHHHHHHHHHHHHHhh---cHHHHHHHHHHHHccCCC--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHH
Q 017383           82 PDATSEKELGNECFKQK---KFKEAIDCYSRSIALSPT--AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSR  156 (372)
Q Consensus        82 ~~a~~~~~~g~~~~~~g---~~~~Ai~~y~~al~~~p~--~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~  156 (372)
                      +...+.+++|.++.+..   +..++|..++..+...|.  -+.++.+|..++++|+|.+|..+++..|+..|++..+...
T Consensus        37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~L  116 (144)
T 1y8m_A           37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL  116 (144)
T ss_dssp             SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence            45555778898888765   456799999999998885  8889999999999999999999999999999999887665


Q ss_pred             HHHH
Q 017383          157 RATA  160 (372)
Q Consensus       157 lg~~  160 (372)
                      ...+
T Consensus       117 k~~I  120 (144)
T 1y8m_A          117 KSMV  120 (144)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5544

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.17  E-value=0.0005  Score=57.27  Aligned_cols=102  Identities=14%  Similarity=0.037  Sum_probs=76.0

Q ss_pred             CCCCCchhhHHHHHhhhhcCCCCc-------hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCC---C------------
Q 017383           59 NSYSRNYDPVSHISSSLMNEESTP-------DATSEKELGNECFKQKKFKEAIDCYSRSIALSP---T------------  116 (372)
Q Consensus        59 y~~g~~~~A~~~~~~al~~~p~~~-------~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p---~------------  116 (372)
                      ++.|.|+.|+-....++.+..+++       .+..+..+|..+|..|+|..|...|++||.+..   .            
T Consensus        31 ~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~s  110 (167)
T 3ffl_A           31 AAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSA  110 (167)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------
T ss_pred             HHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccC
Confidence            467889999998888766543222       234577899999999999999999999876421   1            


Q ss_pred             -----------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 017383          117 -----------AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATAR  161 (372)
Q Consensus       117 -----------~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~  161 (372)
                                 ..+.+.+|.||.++|++++|+..++.. -..-..++....+|..|
T Consensus       111 s~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I-p~k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          111 STPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI-PSRQRTPKINMLLANLY  165 (167)
T ss_dssp             ------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS-CGGGCCHHHHHHHHHHC
T ss_pred             CCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC-CchhcCHHHHHHHHHHh
Confidence                       267899999999999999999987653 11224466666666654

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=97.04  E-value=0.01  Score=58.84  Aligned_cols=124  Identities=6%  Similarity=0.020  Sum_probs=102.5

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHhcCHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIAL--SPTAVAYANRAMAYLKLRRFQEAE  137 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~--~p~~~~~~~la~~~~~~g~~~eA~  137 (372)
                      ..+++++|...|.+..... -.++...|..+-..|.+.|++++|...|.+....  .|+...|..+-.+|.+.|++++|.
T Consensus        82 ~~~~l~~A~~lf~~M~~~G-~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~  160 (501)
T 4g26_A           82 PNPGLSRGFDIFKQMIVDK-VVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAY  160 (501)
T ss_dssp             CCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hcchHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHH
Confidence            4567888999998877654 2345667888999999999999999999987764  578888999999999999999999


Q ss_pred             HHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc--CCCc
Q 017383          138 DDCTEALNLDD-RYIKAYSRRATARKELGKLKESIEDSEFALRL--EPQN  184 (372)
Q Consensus       138 ~~~~~Al~l~p-~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l--~P~~  184 (372)
                      ..+.......- -+...|..+-.++...|+.++|...|++....  .|+.
T Consensus       161 ~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~  210 (501)
T 4g26_A          161 EVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSK  210 (501)
T ss_dssp             HHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCH
T ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCH
Confidence            99999887542 25678888999999999999999999987653  4553

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=96.99  E-value=0.021  Score=56.43  Aligned_cols=140  Identities=12%  Similarity=0.112  Sum_probs=106.6

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHH---------hhcHHHHHHHHHHHHcc--CCCHHHHHHHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFK---------QKKFKEAIDCYSRSIAL--SPTAVAYANRAMAYL  128 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~---------~g~~~~Ai~~y~~al~~--~p~~~~~~~la~~~~  128 (372)
                      ..|++++|+..|++..... -.++...|..+-.+|..         .+.++.|...|.+-...  .|+..+|..+-.+|.
T Consensus        38 k~G~~~~A~~lf~~M~~~G-v~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~  116 (501)
T 4g26_A           38 KKGDVLEALRLYDEARRNG-VQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAV  116 (501)
T ss_dssp             TSCCHHHHHHHHHHHHHHT-CCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred             hCCCHHHHHHHHHHHHHcC-CCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence            6799999999999988754 22345556555555543         34589999999987664  478889999999999


Q ss_pred             HhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc--CCCcHHH---------HHHHHHHHH
Q 017383          129 KLRRFQEAEDDCTEALNLD-DRYIKAYSRRATARKELGKLKESIEDSEFALRL--EPQNQEI---------KKQLAEVKS  196 (372)
Q Consensus       129 ~~g~~~eA~~~~~~Al~l~-p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l--~P~~~~~---------~~~l~~a~~  196 (372)
                      +.|++++|+..+.+..... .-+..+|..+-.++...|++++|...|+.....  .|+....         .+.+++|..
T Consensus       117 ~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~  196 (501)
T 4g26_A          117 AKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYK  196 (501)
T ss_dssp             HHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHH
Confidence            9999999999999988753 235778888889999999999999999998764  4654332         144555555


Q ss_pred             HHHH
Q 017383          197 LYEK  200 (372)
Q Consensus       197 ~~~~  200 (372)
                      .+++
T Consensus       197 ll~~  200 (501)
T 4g26_A          197 TLQR  200 (501)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5554

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=96.94  E-value=0.019  Score=56.64  Aligned_cols=120  Identities=10%  Similarity=-0.108  Sum_probs=84.2

Q ss_pred             hhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHH------------------
Q 017383           65 YDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAM------------------  125 (372)
Q Consensus        65 ~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~------------------  125 (372)
                      ......|++++...|..+..  |...+..+...|+.+.|...|++|+.. |. ...+...+.                  
T Consensus       196 ~Rv~~~ye~al~~~p~~~~l--W~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~  272 (493)
T 2uy1_A          196 SRMHFIHNYILDSFYYAEEV--YFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMG  272 (493)
T ss_dssp             HHHHHHHHHHHHHTTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC--
T ss_pred             HHHHHHHHHHHHcCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhh
Confidence            44678999999999886444  668898899999999999999999999 87 222222211                  


Q ss_pred             ----------------------HHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHccCC
Q 017383          126 ----------------------AYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG-KLKESIEDSEFALRLEP  182 (372)
Q Consensus       126 ----------------------~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg-~~~~A~~~~~~al~l~P  182 (372)
                                            .....+..+.|...|.+| ...+.....|...|.....+| +.+.|...|+.+++..|
T Consensus       273 ~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~  351 (493)
T 2uy1_A          273 EAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP  351 (493)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT
T ss_pred             ccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC
Confidence                                  122355677777788888 433334556666666555555 58888888888888777


Q ss_pred             CcHHHH
Q 017383          183 QNQEIK  188 (372)
Q Consensus       183 ~~~~~~  188 (372)
                      +++..+
T Consensus       352 ~~~~~~  357 (493)
T 2uy1_A          352 DSTLLK  357 (493)
T ss_dssp             TCHHHH
T ss_pred             CCHHHH
Confidence            776654

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.59  E-value=0.0079  Score=62.19  Aligned_cols=111  Identities=6%  Similarity=-0.045  Sum_probs=79.4

Q ss_pred             chhhHHHHHhhhhcCCCCchHHHHHHHHHHH--HH-hhcHHHHHHHHHHHHcc--------CCC-----------HHHHH
Q 017383           64 NYDPVSHISSSLMNEESTPDATSEKELGNEC--FK-QKKFKEAIDCYSRSIAL--------SPT-----------AVAYA  121 (372)
Q Consensus        64 ~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~--~~-~g~~~~Ai~~y~~al~~--------~p~-----------~~~~~  121 (372)
                      ++.|+..+++....+|...   .++..+.+.  .. ..+=-+|+....++++.        .+.           ..++.
T Consensus       265 ~~~a~~~le~L~~~~p~~~---~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~  341 (754)
T 4gns_B          265 VDFTIDYLKGLTKKDPIHD---IYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLN  341 (754)
T ss_dssp             HHHHHHHHHHHHHHCGGGH---HHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCchh---HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHH
Confidence            4668888888888877532   222222221  11 23344577777666631        111           23445


Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 017383          122 NRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFA  177 (372)
Q Consensus       122 ~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~a  177 (372)
                      .-+.-++..|+|+-|+....+|+...|....+|+.|+.+|..+|+|+.|+-.+..+
T Consensus       342 ~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          342 IQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            55777778999999999999999999999999999999999999999999877665

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=96.45  E-value=0.072  Score=52.43  Aligned_cols=115  Identities=4%  Similarity=-0.130  Sum_probs=90.7

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHH--------------------------------------HHHHHHHHHHhhcHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATS--------------------------------------EKELGNECFKQKKFK  101 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~--------------------------------------~~~~g~~~~~~g~~~  101 (372)
                      ..|+.+.|...|++++.. |.....+.                                      |...+..+.+.++.+
T Consensus       225 ~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~  303 (493)
T 2uy1_A          225 GIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLE  303 (493)
T ss_dssp             HTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHH
T ss_pred             HcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHH
Confidence            568899999999999999 87643221                                      112222233577889


Q ss_pred             HHHHHHHHHHccCCC--HHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 017383          102 EAIDCYSRSIALSPT--AVAYANRAMAYLKLR-RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFA  177 (372)
Q Consensus       102 ~Ai~~y~~al~~~p~--~~~~~~la~~~~~~g-~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~a  177 (372)
                      .|...|.+| . .|.  ..+|...|..-+..+ +++.|...|+.+++..|+.+..+...+.....+|+.+.|...|+++
T Consensus       304 ~AR~i~~~A-~-~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~  380 (493)
T 2uy1_A          304 LFRKLFIEL-G-NEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL  380 (493)
T ss_dssp             HHHHHHHHH-T-TSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred             HHHHHHHHh-h-CCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999999999 3 444  667777777777667 5999999999999999999988888888888999999999999998

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=96.00  E-value=0.1  Score=49.69  Aligned_cols=91  Identities=11%  Similarity=-0.006  Sum_probs=75.2

Q ss_pred             HHHHHHHHhhcHHHHHHHHHHHHccCCC-----------------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 017383           89 ELGNECFKQKKFKEAIDCYSRSIALSPT-----------------------AVAYANRAMAYLKLRRFQEAEDDCTEALN  145 (372)
Q Consensus        89 ~~g~~~~~~g~~~~Ai~~y~~al~~~p~-----------------------~~~~~~la~~~~~~g~~~eA~~~~~~Al~  145 (372)
                      ..|......|+.+.|+..+.+|+.+...                       ..+...++.+++..|++.+|+..+..++.
T Consensus       120 ~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~  199 (388)
T 2ff4_A          120 TAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTF  199 (388)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            3444455678889999999999987422                       12334467788999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 017383          146 LDDRYIKAYSRRATARKELGKLKESIEDSEFALR  179 (372)
Q Consensus       146 l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~  179 (372)
                      .+|-+-.+|..+-.++...|+..+|+..|+++..
T Consensus       200 ~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          200 EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999988754

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=95.37  E-value=0.089  Score=51.85  Aligned_cols=78  Identities=13%  Similarity=0.081  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 017383           86 SEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKE  163 (372)
Q Consensus        86 ~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~  163 (372)
                      .+..+|........+..|..+|.+|+.+.|+ ...|+.+|.+....|+.-+|+-+|.+++.-..-++.+..++...+..
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence            3556788887788888999999999999998 88899999999889999999999999988877788888888877664

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=95.37  E-value=0.089  Score=51.84  Aligned_cols=78  Identities=13%  Similarity=-0.020  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHH
Q 017383          119 AYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS  196 (372)
Q Consensus       119 ~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~  196 (372)
                      .+..+|........+..|..+|.+|+.+.|++..+|+.+|.+....|+.-+|+-+|-+++......+.+..++.....
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~  231 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS  231 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence            456678888888889999999999999999999999999999999999999999999999888778888877766544

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.34  E-value=0.05  Score=52.62  Aligned_cols=97  Identities=8%  Similarity=-0.103  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHHHccCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CCC----HHHHH
Q 017383           86 SEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLD--DRY----IKAYS  155 (372)
Q Consensus        86 ~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~--p~~----~~a~~  155 (372)
                      ++..+|..|++.|++++|+++|.++......    ...+.....+++..++|..+...+.++..+-  ..+    .....
T Consensus       133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~  212 (429)
T 4b4t_R          133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT  212 (429)
T ss_dssp             CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence            4669999999999999999999999876433    8888889999999999999999999997652  222    23345


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHccCC
Q 017383          156 RRATARKELGKLKESIEDSEFALRLEP  182 (372)
Q Consensus       156 ~lg~~~~~lg~~~~A~~~~~~al~l~P  182 (372)
                      ..|.++...++|..|...|-.++.-..
T Consensus       213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~~  239 (429)
T 4b4t_R          213 YYGIHCLAVRNFKEAAKLLVDSLATFT  239 (429)
T ss_dssp             HHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHhChHHHHHHHHHHHhccCC
Confidence            567888899999999999988876543

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=95.11  E-value=0.75  Score=38.34  Aligned_cols=96  Identities=13%  Similarity=0.042  Sum_probs=76.2

Q ss_pred             HHHHHHHHhhcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----------------CCCCH
Q 017383           89 ELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNL-----------------DDRYI  151 (372)
Q Consensus        89 ~~g~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~~la~~~~~~g~~~eA~~~~~~Al~l-----------------~p~~~  151 (372)
                      .++..++-.|+|..|+-.+..   + ......+--+.||.++++|..|+.+++..+.-                 ||.+-
T Consensus        38 L~~I~LyyngEY~R~Lf~L~~---l-NT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~Dk  113 (242)
T 3kae_A           38 LMSIVLYLNGEYTRALFHLHK---L-NTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDE  113 (242)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHT---C-CBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCH
T ss_pred             hhhhhhhhcchHhHHHHHHHh---c-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchH
Confidence            678899999999998876532   1 22666677889999999999999999999932                 24444


Q ss_pred             HH-HHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHH
Q 017383          152 KA-YSRRATARKELGKLKESIEDSEFALRLEPQNQEIK  188 (372)
Q Consensus       152 ~a-~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~  188 (372)
                      +- +..+|.++...|+.++|+.+|.......|-.+.+.
T Consensus       114 EfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vE  151 (242)
T 3kae_A          114 EFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVE  151 (242)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHH
Confidence            44 44579999999999999999999999998765543

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=94.72  E-value=0.12  Score=53.50  Aligned_cols=58  Identities=14%  Similarity=0.062  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 017383           86 SEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEA  143 (372)
Q Consensus        86 ~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~A  143 (372)
                      .+...+..+...|+|+-|+.+..+|+.+.|. ...|+.|+.||..+|+|+.|+-.++.+
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            4556678888999999999999999999999 999999999999999999999776654

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=94.36  E-value=0.27  Score=46.91  Aligned_cols=91  Identities=12%  Similarity=-0.005  Sum_probs=74.7

Q ss_pred             HHHHHHHHhhcHHHHHHHHHHHHcc----CCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---CCC----HHHH
Q 017383           89 ELGNECFKQKKFKEAIDCYSRSIAL----SPT---AVAYANRAMAYLKLRRFQEAEDDCTEALNLD---DRY----IKAY  154 (372)
Q Consensus        89 ~~g~~~~~~g~~~~Ai~~y~~al~~----~p~---~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~---p~~----~~a~  154 (372)
                      .+|..|+..|+|.+|+..+.+.+.-    +..   ..++..-..+|..++++.++...+++|....   +.+    +...
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~  183 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD  183 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence            7899999999999999999988873    222   7788888999999999999999999987653   122    3334


Q ss_pred             HHHHHHHH-HcCCHHHHHHHHHHHHc
Q 017383          155 SRRATARK-ELGKLKESIEDSEFALR  179 (372)
Q Consensus       155 ~~lg~~~~-~lg~~~~A~~~~~~al~  179 (372)
                      ..-|..+. ..|+|..|..+|-.++.
T Consensus       184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~  209 (394)
T 3txn_A          184 LQSGILHAADERDFKTAFSYFYEAFE  209 (394)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHhccCHHHHHHHHHHHHh
Confidence            55688888 89999999999999874

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=94.34  E-value=0.44  Score=38.92  Aligned_cols=99  Identities=11%  Similarity=-0.006  Sum_probs=75.0

Q ss_pred             hhhHHHHHhhhhcCCCCc------hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 017383           65 YDPVSHISSSLMNEESTP------DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE  137 (372)
Q Consensus        65 ~~A~~~~~~al~~~p~~~------~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~  137 (372)
                      ++-++.|++++..-|...      .++.|...|. +...++.++|...|+.|+.+... +.+|...|.--.++|+...|.
T Consensus        36 ~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~-~~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kAR  114 (161)
T 4h7y_A           36 NKLIGRYSQAIEALPPDKYGQNESFARIQVRFAE-LKAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSK  114 (161)
T ss_dssp             HHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHH-HHHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCccccccHHHHHHHHHHHHH-HHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHH
Confidence            556788999988666532      2334445553 35679999999999999998555 999999999999999999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 017383          138 DDCTEALNLDDRYIKAYSRRATARKELG  165 (372)
Q Consensus       138 ~~~~~Al~l~p~~~~a~~~lg~~~~~lg  165 (372)
                      ..+.+|+.+.|..... ...+......|
T Consensus       115 kILg~AiG~~~k~~~~-le~a~~nl~~~  141 (161)
T 4h7y_A          115 QLLQKAVERGAVPLEM-LEIALRNLNLQ  141 (161)
T ss_dssp             HHHHHHHHTTCBCHHH-HHHHHHHHHTT
T ss_pred             HHHHHHhccCCCcHHH-HHHHHHhhhcC
Confidence            9999999999986553 33444444444

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=94.25  E-value=0.5  Score=39.66  Aligned_cols=99  Identities=12%  Similarity=0.016  Sum_probs=63.1

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHhcCHHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDD  139 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~~la~~~~~~g~~~eA~~~  139 (372)
                      ..|+++.|.+.....   +    ....|+.+|......|+++-|..||.++=..       ..+...|.-.|+.+.-...
T Consensus        17 ~lg~l~~A~e~a~~l---~----~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~-------~~L~~Ly~~tg~~e~L~kl   82 (177)
T 3mkq_B           17 EYGNLDAALDEAKKL---N----DSITWERLIQEALAQGNASLAEMIYQTQHSF-------DKLSFLYLVTGDVNKLSKM   82 (177)
T ss_dssp             HTTCHHHHHHHHHHH---C----CHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH-------HHHHHHHHHHTCHHHHHHH
T ss_pred             hcCCHHHHHHHHHHh---C----CHHHHHHHHHHHHHcCChHHHHHHHHHhCCH-------HHHHHHHHHhCCHHHHHHH
Confidence            567888887776544   2    2334778898888999999998888886432       2344456666666555444


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 017383          140 CTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFA  177 (372)
Q Consensus       140 ~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~a  177 (372)
                      .+.|...+ +    +.....++..+|+++++++.|.+.
T Consensus        83 a~iA~~~g-~----~n~af~~~l~lGdv~~~i~lL~~~  115 (177)
T 3mkq_B           83 QNIAQTRE-D----FGSMLLNTFYNNSTKERSSIFAEG  115 (177)
T ss_dssp             HHHHHHTT-C----HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHHCc-c----HHHHHHHHHHcCCHHHHHHHHHHC
Confidence            44443322 1    122345677888888888887554

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=93.83  E-value=2.3  Score=35.45  Aligned_cols=82  Identities=12%  Similarity=0.010  Sum_probs=54.4

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHc--c--CCC---------------HHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIA--L--SPT---------------AVAY  120 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~--~--~p~---------------~~~~  120 (372)
                      -.|+|.+++-++.+.     +  .+...+-.+.||.+.++|..|+.+.+..+.  +  +|+               .-.+
T Consensus        45 yngEY~R~Lf~L~~l-----N--T~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy  117 (242)
T 3kae_A           45 LNGEYTRALFHLHKL-----N--TCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFE  117 (242)
T ss_dssp             HTTCHHHHHHHHHTC-----C--BHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHH
T ss_pred             hcchHhHHHHHHHhc-----c--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHH
Confidence            456666655544321     1  333455667788888888888888888882  2  232               2345


Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 017383          121 ANRAMAYLKLRRFQEAEDDCTEALNLDD  148 (372)
Q Consensus       121 ~~la~~~~~~g~~~eA~~~~~~Al~l~p  148 (372)
                      ..+|..+...|+-++|+.++......+|
T Consensus       118 ~l~a~lltq~g~r~EaI~y~~~Sf~~~~  145 (242)
T 3kae_A          118 SLLGDLCTLSGYREEGIGHYVRSFGKSF  145 (242)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHhcCHHHhhhHhhhhcCCcc
Confidence            6678888888888888888887766554

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=93.56  E-value=0.23  Score=51.01  Aligned_cols=45  Identities=13%  Similarity=0.223  Sum_probs=32.4

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSI  111 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al  111 (372)
                      ..|+++.|.+.+...   +    ....|..+|..+...|+++.|+.||.++-
T Consensus       664 ~~~~~~~A~~~~~~~---~----~~~~W~~la~~al~~~~~~~A~~~y~~~~  708 (814)
T 3mkq_A          664 KVGQLTLARDLLTDE---S----AEMKWRALGDASLQRFNFKLAIEAFTNAH  708 (814)
T ss_dssp             HHTCHHHHHHHHTTC---C----CHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             hcCCHHHHHHHHHhh---C----cHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence            457777777764332   2    23457788999999999999999998863

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=93.53  E-value=0.39  Score=43.08  Aligned_cols=62  Identities=16%  Similarity=0.029  Sum_probs=42.8

Q ss_pred             HHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHH
Q 017383          127 YLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK  188 (372)
Q Consensus       127 ~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~  188 (372)
                      +++.|+..+|+..+...++-+|.++.....+-..+.-.|+++.|..-++.+.+++|.....-
T Consensus         7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a   68 (273)
T 1zbp_A            7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA   68 (273)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHH
Confidence            45666677777777777777777777777777777777777777777777777777664443

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.30  E-value=0.17  Score=49.83  Aligned_cols=126  Identities=10%  Similarity=-0.075  Sum_probs=60.9

Q ss_pred             CCCCchhhHHHHHhhhh---cCCCC------chHHHHHHHHHHHHHhhcHHHHHH----------HHHHHH-----ccCC
Q 017383           60 SYSRNYDPVSHISSSLM---NEEST------PDATSEKELGNECFKQKKFKEAID----------CYSRSI-----ALSP  115 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~---~~p~~------~~a~~~~~~g~~~~~~g~~~~Ai~----------~y~~al-----~~~p  115 (372)
                      +.+++++|..+....+.   +...+      -.+..|+..+.++-..|+......          .+-.++     ..|+
T Consensus       148 d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~  227 (523)
T 4b4t_S          148 DSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDN  227 (523)
T ss_dssp             -------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCSSS
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCc
Confidence            67788888887766552   11110      123345555555555665544211          122222     3345


Q ss_pred             C--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--CC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcH
Q 017383          116 T--AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD--RY---IKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ  185 (372)
Q Consensus       116 ~--~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p--~~---~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~  185 (372)
                      .  +.+++.+=..|+..+.|+.|.....++.-...  .+   +..+|.+|.++...++|.+|..+|..|++..|.+.
T Consensus       228 ~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~  304 (523)
T 4b4t_S          228 ETKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS  304 (523)
T ss_dssp             CHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred             chhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence            4  77788888899999999999999999853211  11   45577899999999999999999999999988653

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=93.17  E-value=1.1  Score=40.22  Aligned_cols=116  Identities=11%  Similarity=-0.004  Sum_probs=68.8

Q ss_pred             CCCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC--HHHHHHHHHHHHHhcCHHHH
Q 017383           59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT--AVAYANRAMAYLKLRRFQEA  136 (372)
Q Consensus        59 y~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~--~~~~~~la~~~~~~g~~~eA  136 (372)
                      +..|++++|+......++.+|.+.....  .+-..+.-.|+|+.|...++-+.+++|.  ..+...+..+.        |
T Consensus         8 l~~g~L~~al~~~~~~VR~~P~da~~R~--~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~--------a   77 (273)
T 1zbp_A            8 LSEGQLQQALELLIEAIKASPKDASLRS--SFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVK--------A   77 (273)
T ss_dssp             TTTTCHHHHHHHHHHHHHTCTTCHHHHH--HHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH--------H
T ss_pred             HhCCCHHHHHHHHHHHHHhCCcCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHH--------H
Confidence            4667888888888888888888666554  5667777788888888888888888887  22111111111        1


Q ss_pred             HHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCc
Q 017383          137 EDDCTEALNL--------DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN  184 (372)
Q Consensus       137 ~~~~~~Al~l--------~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~  184 (372)
                      +..=...+.-        .|.........+......|+.++|...-.+++...|..
T Consensus        78 E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~  133 (273)
T 1zbp_A           78 AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK  133 (273)
T ss_dssp             HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence            1111111111        11122233344555666678888877777777776643

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=92.89  E-value=0.56  Score=44.48  Aligned_cols=84  Identities=12%  Similarity=0.030  Sum_probs=65.7

Q ss_pred             CCchhhHHHHHhhhhcCCCC--c------h--H----------HHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHH
Q 017383           62 SRNYDPVSHISSSLMNEEST--P------D--A----------TSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAY  120 (372)
Q Consensus        62 g~~~~A~~~~~~al~~~p~~--~------~--a----------~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~  120 (372)
                      |+.+.|...+.+++.+--..  +      .  .          .+...++..+...|++.+|+..+..++..+|- -.+|
T Consensus       129 ~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~  208 (388)
T 2ff4_A          129 GRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLW  208 (388)
T ss_dssp             TCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            56677778888887743211  0      0  0          12345677788999999999999999999998 7889


Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHh
Q 017383          121 ANRAMAYLKLRRFQEAEDDCTEALN  145 (372)
Q Consensus       121 ~~la~~~~~~g~~~eA~~~~~~Al~  145 (372)
                      ..+-.+|...|+..+|+..|+++..
T Consensus       209 ~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          209 TQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            9999999999999999999988644

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=92.16  E-value=2  Score=45.80  Aligned_cols=96  Identities=8%  Similarity=-0.068  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHHH-----ccCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Q 017383           86 SEKELGNECFKQKKFKEAIDCYSRSI-----ALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLD-DRYIKAYSRRAT  159 (372)
Q Consensus        86 ~~~~~g~~~~~~g~~~~Ai~~y~~al-----~~~p~~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~-p~~~~a~~~lg~  159 (372)
                      .+..+-+.|.+.|+.++|...|..--     ...|+...|+.+-..|.+.|++++|...|.+..... .-+..+|..+-.
T Consensus       129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~  208 (1134)
T 3spa_A          129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ  208 (1134)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence            57788889999999999999996633     356889999999999999999999999999987754 235677777777


Q ss_pred             HHHHcCC-HHHHHHHHHHHHccC
Q 017383          160 ARKELGK-LKESIEDSEFALRLE  181 (372)
Q Consensus       160 ~~~~lg~-~~~A~~~~~~al~l~  181 (372)
                      ++...|+ .++|...|++.....
T Consensus       209 glcK~G~~~e~A~~Ll~EM~~kG  231 (1134)
T 3spa_A          209 CMGRQDQDAGTIERCLEQMSQEG  231 (1134)
T ss_dssp             HHHHHTCCHHHHHHHHHHHHHHT
T ss_pred             HHHhCCCcHHHHHHHHHHHHHcC
Confidence            8888898 578889998887643

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=90.72  E-value=3.2  Score=39.99  Aligned_cols=98  Identities=12%  Similarity=0.026  Sum_probs=76.9

Q ss_pred             hHHHHHHHHHHHHHhhcHHHHHHHHHHHHc----cCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHh---cCCCC--
Q 017383           83 DATSEKELGNECFKQKKFKEAIDCYSRSIA----LSPT---AVAYANRAMAYLKLRRFQEAEDDCTEALN---LDDRY--  150 (372)
Q Consensus        83 ~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~----~~p~---~~~~~~la~~~~~~g~~~eA~~~~~~Al~---l~p~~--  150 (372)
                      .+.....++..|...|+|.+|...+.....    .+..   ...+......|+..++|..|...++++..   -.+..  
T Consensus       136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~  215 (445)
T 4b4t_P          136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYES  215 (445)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHH
Confidence            344556889999999999999999988753    2222   67788889999999999999999998742   12222  


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 017383          151 --IKAYSRRATARKELGKLKESIEDSEFALRL  180 (372)
Q Consensus       151 --~~a~~~lg~~~~~lg~~~~A~~~~~~al~l  180 (372)
                        ...+...|..+...++|.+|..+|..++..
T Consensus       216 lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          216 LKLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence              334566788999999999999999999864

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=88.98  E-value=3.2  Score=42.34  Aligned_cols=77  Identities=17%  Similarity=0.133  Sum_probs=49.0

Q ss_pred             HHHhhcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcC
Q 017383           94 CFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNL--------DDRYIKAYSRRATARKELG  165 (372)
Q Consensus        94 ~~~~g~~~~Ai~~y~~al~~~p~~~~~~~la~~~~~~g~~~eA~~~~~~Al~l--------~p~~~~a~~~lg~~~~~lg  165 (372)
                      ....|+++.|.+....    -.+...|.++|..+++.|+++.|+.+|.++-..        ...+.+.+..++......|
T Consensus       662 ~l~~~~~~~A~~~~~~----~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~  737 (814)
T 3mkq_A          662 ALKVGQLTLARDLLTD----ESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTG  737 (814)
T ss_dssp             HHHHTCHHHHHHHHTT----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             hhhcCCHHHHHHHHHh----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            3455666666555321    123788899999999999999999999886221        2344455555565555666


Q ss_pred             CHHHHHHHH
Q 017383          166 KLKESIEDS  174 (372)
Q Consensus       166 ~~~~A~~~~  174 (372)
                      ++..|...|
T Consensus       738 ~~~~A~~~~  746 (814)
T 3mkq_A          738 KFNLAFNAY  746 (814)
T ss_dssp             CHHHHHHHH
T ss_pred             chHHHHHHH
Confidence            666665554

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=88.18  E-value=2  Score=40.76  Aligned_cols=112  Identities=9%  Similarity=-0.022  Sum_probs=79.7

Q ss_pred             CCCCC-CCCCchhhHHHHHhhhhc----CCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccC----CC----HHHHH
Q 017383           55 SPSGN-SYSRNYDPVSHISSSLMN----EESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALS----PT----AVAYA  121 (372)
Q Consensus        55 ~~~~y-~~g~~~~A~~~~~~al~~----~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~----p~----~~~~~  121 (372)
                      +|..| ..|+|.+|+..+.+.++.    +....-...+.....+|...|++.++...|.+|....    +.    +.+..
T Consensus       105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~  184 (394)
T 3txn_A          105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDL  184 (394)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHH
Confidence            33444 889999999998887763    2222223445677888999999999999999986542    33    56667


Q ss_pred             HHHHHHH-HhcCHHHHHHHHHHHHhcCC-----CCHHHHHHHHHHHHHcCC
Q 017383          122 NRAMAYL-KLRRFQEAEDDCTEALNLDD-----RYIKAYSRRATARKELGK  166 (372)
Q Consensus       122 ~la~~~~-~~g~~~eA~~~~~~Al~l~p-----~~~~a~~~lg~~~~~lg~  166 (372)
                      .-|..++ ..++|..|-.+|-.++.-..     ....+...++.+-...++
T Consensus       185 ~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~  235 (394)
T 3txn_A          185 QSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQ  235 (394)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCC
Confidence            7799999 89999999999999875322     223344556666666665

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=86.83  E-value=1.7  Score=47.19  Aligned_cols=26  Identities=23%  Similarity=0.247  Sum_probs=16.7

Q ss_pred             chhHHHHHHhhhcCC----HHHHHHHHhhc
Q 017383          317 SAYEFEVSWRGFAGD----HALQARLLKAI  342 (372)
Q Consensus       317 ~s~~f~~~~~~~~~~----~~~~~~yl~~i  342 (372)
                      +-|++-=.||-.++|    ...+|+|+.++
T Consensus      1021 ~Yy~iLYs~ri~r~dyR~AA~vmYe~~~RL 1050 (1139)
T 4fhn_B         1021 CWYNILFSWRYKHQNYRDAAAIIYEKLSRY 1050 (1139)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             CHHHHhHhhhhccCChHHHHHHHHHHHHHh
Confidence            557777777777643    45567776654

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=82.91  E-value=6.4  Score=32.83  Aligned_cols=47  Identities=11%  Similarity=0.035  Sum_probs=40.2

Q ss_pred             HHHhhcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 017383           94 CFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEAL  144 (372)
Q Consensus        94 ~~~~g~~~~Ai~~y~~al~~~p~~~~~~~la~~~~~~g~~~eA~~~~~~Al  144 (372)
                      ....|+++.|.+.....    .+...|..+|...+..|+++-|+.+|.++-
T Consensus        15 AL~lg~l~~A~e~a~~l----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~   61 (177)
T 3mkq_B           15 ALEYGNLDAALDEAKKL----NDSITWERLIQEALAQGNASLAEMIYQTQH   61 (177)
T ss_dssp             HHHTTCHHHHHHHHHHH----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred             HHhcCCHHHHHHHHHHh----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence            46889999999987654    237889999999999999999999999863

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=82.38  E-value=7.1  Score=37.29  Aligned_cols=88  Identities=13%  Similarity=0.021  Sum_probs=68.8

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCc-hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccC---CC----HHHHHHHHHHHHHhc
Q 017383           60 SYSRNYDPVSHISSSLMNEESTP-DATSEKELGNECFKQKKFKEAIDCYSRSIALS---PT----AVAYANRAMAYLKLR  131 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~-~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~---p~----~~~~~~la~~~~~~g  131 (372)
                      ..||++.|+..|.++........ ....+...-.+++..++|..+..++.++-.+.   ++    .......|..++..+
T Consensus       143 ~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r  222 (429)
T 4b4t_R          143 QIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVR  222 (429)
T ss_dssp             HHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTS
T ss_pred             HcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhC
Confidence            77999999999999887554332 34456677788899999999999999986642   22    445566788889999


Q ss_pred             CHHHHHHHHHHHHhcC
Q 017383          132 RFQEAEDDCTEALNLD  147 (372)
Q Consensus       132 ~~~eA~~~~~~Al~l~  147 (372)
                      +|..|-..|-.++.-.
T Consensus       223 ~f~~Aa~~f~e~~~t~  238 (429)
T 4b4t_R          223 NFKEAAKLLVDSLATF  238 (429)
T ss_dssp             CHHHHHHHHHHHHHHS
T ss_pred             hHHHHHHHHHHHhccC
Confidence            9999999998887654

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=81.37  E-value=5.7  Score=40.06  Aligned_cols=86  Identities=12%  Similarity=-0.080  Sum_probs=51.1

Q ss_pred             HHHhhcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 017383           94 CFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIED  173 (372)
Q Consensus        94 ~~~~g~~~~Ai~~y~~al~~~p~~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~  173 (372)
                      ++..+...++...+.+......+....-.++...+..|++..|..++.+.-.-........|-+|.++..+|+.++|...
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~  341 (618)
T 1qsa_A          262 LMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEI  341 (618)
T ss_dssp             SCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHcCCChHHHHHHHhccccCCChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHH
Confidence            33444345566666665544444222222333344567888877777664443334566777777777778888888777


Q ss_pred             HHHHHc
Q 017383          174 SEFALR  179 (372)
Q Consensus       174 ~~~al~  179 (372)
                      |+++..
T Consensus       342 ~~~~a~  347 (618)
T 1qsa_A          342 LHQLMQ  347 (618)
T ss_dssp             HHHHHT
T ss_pred             HHHHhc
Confidence            777764

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=81.06  E-value=15  Score=36.01  Aligned_cols=70  Identities=10%  Similarity=-0.010  Sum_probs=56.6

Q ss_pred             CchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccC---CC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 017383           81 TPDATSEKELGNECFKQKKFKEAIDCYSRSIALS---PT---AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY  150 (372)
Q Consensus        81 ~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~---p~---~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~  150 (372)
                      ...+..++.+=..|...+.|+.|.....++.--.   ++   ...++.+|.++.-.++|.+|..++..|+...|.+
T Consensus       228 ~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~  303 (523)
T 4b4t_S          228 ETKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN  303 (523)
T ss_dssp             CHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred             chhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence            3566677778888999999999999999985321   12   5556788999999999999999999999987754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	372
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	7e-15
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-13
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-12
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-12
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-12
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-08
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	5e-08
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	4e-14
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	4e-14
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	2e-12
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	3e-12
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	2e-11
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	6e-11
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	2e-10
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	5e-10
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	5e-09
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	5e-09
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	3e-04
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	4e-04
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	2e-08
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	4e-05
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	5e-05
d2hr2a1	156	a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C	2e-07
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	2e-06
d1tjca_	95	a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni	7e-05
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	1e-04
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	0.003
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	3e-04
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	0.002
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	3e-04
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	3e-04
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	0.004

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.8 bits (177), Expect = 7e-15
 Identities = 37/138 (26%), Positives = 57/138 (41%), Gaps = 3/138 (2%)

Query: 76  MNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQ 134
               S   A     L    ++Q     AID Y R+I L P    AY N A A  +     
Sbjct: 229 ALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVA 288

Query: 135 EAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV 194
           EAED    AL L   +  + +  A  ++E G ++E++     AL + P+       LA V
Sbjct: 289 EAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASV 348

Query: 195 KSLYEKEVFQKASKTLEK 212
             L ++   Q+A    ++
Sbjct: 349 --LQQQGKLQEALMHYKE 364

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.2 bits (165), Expect = 2e-13
 Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 3/131 (2%)

Query: 83  DATSEKELGNECFKQKKFKEAIDCYSRSIALS-PTAVAYANRAMAYLKLRRFQEAEDDCT 141
              +   LGN   + + F  A+  Y R+++LS   AV + N A  Y +      A D   
Sbjct: 202 FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYR 261

Query: 142 EALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKE 201
            A+ L   +  AY   A A KE G + E+ +    ALRL P + +    LA +    E+ 
Sbjct: 262 RAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI--KREQG 319

Query: 202 VFQKASKTLEK 212
             ++A +   K
Sbjct: 320 NIEEAVRLYRK 330

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.8 bits (159), Expect = 1e-12
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 1/77 (1%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           L N   +Q   +EA+  Y +++ + P  A A++N A    +  + QEA     EA+ +  
Sbjct: 311 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370

Query: 149 RYIKAYSRRATARKELG 165
            +  AYS      KE+ 
Sbjct: 371 TFADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.8 bits (159), Expect = 2e-12
 Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 1/113 (0%)

Query: 83  DATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYAN-RAMAYLKLRRFQEAEDDCT 141
              +   L N   ++    EA DCY+ ++ L PT     N  A    +    +EA     
Sbjct: 270 FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYR 329

Query: 142 EALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV 194
           +AL +   +  A+S  A+  ++ GKL+E++   + A+R+ P   +    +   
Sbjct: 330 KALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 382

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.7 bits (156), Expect = 3e-12
 Identities = 12/73 (16%), Positives = 24/73 (32%), Gaps = 1/73 (1%)

Query: 89  ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD 147
           EL +  ++   F+ A     +     P         +  + + RR   +    T A+  +
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63

Query: 148 DRYIKAYSRRATA 160
               +AYS     
Sbjct: 64  PLLAEAYSNLGNV 76

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (123), Expect = 4e-08
 Identities = 28/139 (20%), Positives = 44/139 (31%), Gaps = 17/139 (12%)

Query: 83  DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCT 141
            A +   LG     Q +   AI  + +++ L P    AY N      + R F  A     
Sbjct: 168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAY- 226

Query: 142 EALNLDDRYIK-------AYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV 194
                  R +         +   A    E G +  +I+    A+ L+P   +    LA  
Sbjct: 227 ------LRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANA 280

Query: 195 KSLYEKEVFQKASKTLEKY 213
             L EK    +A       
Sbjct: 281 --LKEKGSVAEAEDCYNTA 297

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (123), Expect = 5e-08
 Identities = 13/73 (17%), Positives = 23/73 (31%)

Query: 122 NRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLE 181
             A    +   F+ AE  C +    +          ++   +  +L  S   S  A++  
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63

Query: 182 PQNQEIKKQLAEV 194
           P   E    L  V
Sbjct: 64  PLLAEAYSNLGNV 76

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.4 bits (163), Expect = 4e-14
 Identities = 38/137 (27%), Positives = 69/137 (50%), Gaps = 1/137 (0%)

Query: 78  EESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYL-KLRRFQEA 136
           + +   A   K   N+ FK K ++ AI  YS++I L+P+   Y         +   +  A
Sbjct: 4   DGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYA 63

Query: 137 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS 196
             D T A+ LD +YIK Y RRA +   LGK + ++ D E  ++++P +++ K +  E   
Sbjct: 64  LGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNK 123

Query: 197 LYEKEVFQKASKTLEKY 213
           + +++ F++A    E  
Sbjct: 124 IVKQKAFERAIAGDEHK 140

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.5 bits (166), Expect = 4e-14
 Identities = 45/187 (24%), Positives = 77/187 (41%), Gaps = 6/187 (3%)

Query: 81  TPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDD 139
           +P A   KE GN  F  +K+ EA  CY R+I  +P  AV Y NRA+ YLK+++ ++A  D
Sbjct: 1   SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALAD 60

Query: 140 CTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ-----EIKKQLAEV 194
           C  AL LD + +KA+      + E+    E+I + + A  L  + +     +I   L   
Sbjct: 61  CRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA 120

Query: 195 KSLYEKEVFQKASKTLEKYGKSGMKVNGHEVRAVRNTIQKTGVAEIQDLTISKKTENKNL 254
           K      + ++      +      ++   E        Q+       D  I  +      
Sbjct: 121 KKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEA 180

Query: 255 RDESKTE 261
           + +    
Sbjct: 181 KHDKYMA 187

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 62.3 bits (150), Expect = 2e-12
 Identities = 37/161 (22%), Positives = 67/161 (41%), Gaps = 19/161 (11%)

Query: 75  LMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----------------AV 118
           +  +E    A   KE G   FK  K+ +A+  Y + ++                      
Sbjct: 6   MDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLA 65

Query: 119 AYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFAL 178
           A+ N AM YLKLR + +A + C +AL LD    K   RR  A+  + + + +  D E  L
Sbjct: 66  AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVL 125

Query: 179 RLEPQNQEIKKQLAEVKSL---YEKEVFQKASKTLEKYGKS 216
            + PQN+  + Q+   +     + +   +  +   +K+ + 
Sbjct: 126 EVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMFKKFAEQ 166

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.9 bits (152), Expect = 3e-12
 Identities = 36/137 (26%), Positives = 53/137 (38%), Gaps = 3/137 (2%)

Query: 80  STPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDD 139
           S  +A S    G     +K +K A+D +S      P +    N    Y  L+   EAE  
Sbjct: 1   SLVEAISLWNEGVLAADKKDWKGALDAFSA--VQDPHSRICFNIGCMYTILKNMTEAEKA 58

Query: 140 CTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK-KQLAEVKSLY 198
            T ++N D     AY +R     +  K   +I+D + AL     NQ I  K L     L+
Sbjct: 59  FTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLF 118

Query: 199 EKEVFQKASKTLEKYGK 215
             EV    +    K  +
Sbjct: 119 ACEVLYNIAFMYAKKEE 135

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (141), Expect = 2e-11
 Identities = 29/126 (23%), Positives = 59/126 (46%), Gaps = 9/126 (7%)

Query: 84  ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTE 142
           A  EKELGN+ +K+K F  A+  Y ++  L PT      N+A  Y +   + +  + C +
Sbjct: 4   ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63

Query: 143 ALNLD-------DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVK 195
           A+ +         +  KAY+R   +  +  K K++I     +L       ++ K+  + +
Sbjct: 64  AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAE 122

Query: 196 SLYEKE 201
            + +++
Sbjct: 123 KILKEQ 128

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 58.1 bits (139), Expect = 6e-11
 Identities = 34/138 (24%), Positives = 52/138 (37%), Gaps = 17/138 (12%)

Query: 75  LMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-----------------A 117
             +EE    A   KE GNE FK+ +  EAI  Y  ++                       
Sbjct: 8   YTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEI 67

Query: 118 VAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFA 177
               N A  Y K + + +A D  ++ L +D   +KA  +   A    G L+E+ E+   A
Sbjct: 68  SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKA 127

Query: 178 LRLEPQNQEIKKQLAEVK 195
             L P N +I+       
Sbjct: 128 ASLNPNNLDIRNSYELCV 145

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.4 bits (132), Expect = 2e-10
 Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 1/110 (0%)

Query: 88  KELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALN-L 146
           KE GN+        +A+ CYS +I L P      +   A    +   +   +       L
Sbjct: 7   KEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL 66

Query: 147 DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS 196
              + K YSR+A A + L + +E+    E  L+ E  N ++K+ L  +++
Sbjct: 67  KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.9 bits (133), Expect = 5e-10
 Identities = 34/135 (25%), Positives = 59/135 (43%), Gaps = 17/135 (12%)

Query: 84  ATSEKELGNECFKQKKFKEAIDCYSRS----------------IALSPT-AVAYANRAMA 126
           +   K +GN  FK + ++ AI  Y++                   L P       N    
Sbjct: 27  SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGAC 86

Query: 127 YLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186
            LK+  +Q A D C EAL +D    KA  RRA   + L +  +++ D + A  + P+++ 
Sbjct: 87  KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKA 146

Query: 187 IKKQLAEVKSLYEKE 201
           I+ +L +VK   + +
Sbjct: 147 IQAELLKVKQKIKAQ 161

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (126), Expect = 5e-09
 Identities = 42/164 (25%), Positives = 68/164 (41%), Gaps = 19/164 (11%)

Query: 75  LMNEESTPDATSEKELGNECFKQKKFKEAIDCYSR----------------SIALSPTAV 118
           + +EE    +T  KE G   FK+ K+K+A+  Y +                  A +    
Sbjct: 4   MNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLA 63

Query: 119 AYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFAL 178
           ++ N AM +LKL+ F  A + C +AL LD    K  SRR  A   +   + +  D +  L
Sbjct: 64  SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVL 123

Query: 179 RLEPQNQEIKKQLAEVKSL---YEKEVFQKASKTLEKYGKSGMK 219
           +L P N+  K QLA  +           +  +   E+  +   K
Sbjct: 124 QLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLAEEENK 167

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (130), Expect = 5e-09
 Identities = 16/128 (12%), Positives = 33/128 (25%), Gaps = 1/128 (0%)

Query: 89  ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD 147
           E G    ++     A+  +  ++   P    A+        +  +   A       L L 
Sbjct: 24  EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK 83

Query: 148 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKAS 207
                A    A +       +++ E     LR  P    +     E          ++  
Sbjct: 84  PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRIL 143

Query: 208 KTLEKYGK 215
            +L     
Sbjct: 144 GSLLSDSL 151

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 3e-04
 Identities = 16/101 (15%), Positives = 35/101 (34%), Gaps = 5/101 (4%)

Query: 92  NECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY 150
                  + +EA+  Y R++ L P    +  N  ++ + L   +EA +   EALN+  + 
Sbjct: 214 ATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS 273

Query: 151 IKAYSRRATARKE----LGKLKESIEDSEFALRLEPQNQEI 187
                      +     L      +  S+     + ++   
Sbjct: 274 RGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST 314

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 4e-04
 Identities = 21/108 (19%), Positives = 48/108 (44%), Gaps = 1/108 (0%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMA-YLKLRRFQEAEDDCTEALNLDD 148
           LG       ++ +A+DC++ ++++ P      N+  A      + +EA      AL L  
Sbjct: 178 LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP 237

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS 196
            YI++      +   LG  +E++E    AL ++ +++  + +   +  
Sbjct: 238 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSE 285

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 52.3 bits (125), Expect = 2e-08
 Identities = 15/103 (14%), Positives = 38/103 (36%), Gaps = 1/103 (0%)

Query: 91  GNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR 149
                 + + ++A++    +I  SP  A   ++          F+ A++   +++ L   
Sbjct: 3   WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 62

Query: 150 YIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLA 192
           Y+   S+     K     K+  + +  A  L    +  K  ++
Sbjct: 63  YLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVS 105

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 42.3 bits (99), Expect = 4e-05
 Identities = 10/105 (9%), Positives = 25/105 (23%), Gaps = 2/105 (1%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPTA-VAYANRAMAYLKLRRFQEAEDDCTEALNLD- 147
                     F+ A +   +SI L P      +         +  ++       A  L  
Sbjct: 36  FIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGE 95

Query: 148 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLA 192
           +  +                ++  E +     L  +   +    +
Sbjct: 96  NEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLANDTS 140

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 41.9 bits (98), Expect = 5e-05
 Identities = 12/72 (16%), Positives = 25/72 (34%)

Query: 123 RAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEP 182
           +    L   + Q+A +   EA+    +     S         G  + + E    +++L P
Sbjct: 2   QWKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP 61

Query: 183 QNQEIKKQLAEV 194
           +      QL  +
Sbjct: 62  EYLPGASQLRHL 73

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

 Score = 47.8 bits (112), Expect = 2e-07
 Identities = 23/146 (15%), Positives = 43/146 (29%), Gaps = 24/146 (16%)

Query: 79  ESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------------AVAYANRAM 125
           +    A              ++ EA     R++ +S T             A  +A  A 
Sbjct: 4   KEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAE 63

Query: 126 AYLKLRRFQEA-----------EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDS 174
           A   LR F EA                   +    +I A   RA A   LG+  E++ + 
Sbjct: 64  ALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEF 123

Query: 175 EFALRLEPQNQEIKKQLAEVKSLYEK 200
           +  + +  + +        +  +   
Sbjct: 124 KKVVEMIEERKGETPGKERMMEVAID 149

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (104), Expect = 2e-06
 Identities = 16/119 (13%), Positives = 36/119 (30%), Gaps = 6/119 (5%)

Query: 89  ELGNECFKQKKFKEAIDCYSRSIALSP----TAVAYANRAMAYLKLRRFQEAEDDCTEA- 143
            + NE    +   +    +    A       T   YA   +        ++      E  
Sbjct: 4   AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELL 63

Query: 144 -LNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKE 201
                +         A     L + +++++     L+ EPQN + K+    +    +K+
Sbjct: 64  PKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKKD 122

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (91), Expect = 7e-05
 Identities = 10/86 (11%), Positives = 23/86 (26%), Gaps = 8/86 (9%)

Query: 89  ELGNECFKQKKFKEAIDCYSRSIALSPTAVA--------YANRAMAYLKLRRFQEAEDDC 140
           ELG   + +  +        +++                    + A  +     +A    
Sbjct: 10  ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLT 69

Query: 141 TEALNLDDRYIKAYSRRATARKELGK 166
            + L LD  + +A          + K
Sbjct: 70  KKLLELDPEHQRANGNLKYFEYIMAK 95

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 41.4 bits (95), Expect = 1e-04
 Identities = 17/86 (19%), Positives = 25/86 (29%), Gaps = 5/86 (5%)

Query: 117 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR-----YIKAYSRRATARKELGKLKESI 171
           A   A RA   +      EAE     AL           I A S         G+L  S+
Sbjct: 12  AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSL 71

Query: 172 EDSEFALRLEPQNQEIKKQLAEVKSL 197
              +   ++  Q+      L  +   
Sbjct: 72  ALMQQTEQMARQHDVWHYALWSLIQQ 97

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 36.8 bits (83), Expect = 0.003
 Identities = 14/124 (11%), Positives = 34/124 (27%), Gaps = 7/124 (5%)

Query: 75  LMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIAL-------SPTAVAYANRAMAY 127
                +       + +        +F+ A                 S            Y
Sbjct: 242 PEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLY 301

Query: 128 LKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI 187
            +  R  +A+    +AL L +R                +L++ I+ +      + + Q I
Sbjct: 302 WQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRI 361

Query: 188 KKQL 191
            +++
Sbjct: 362 LREI 365

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (94), Expect = 3e-04
 Identities = 10/87 (11%), Positives = 27/87 (31%), Gaps = 1/87 (1%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           LG+    + +  +A   Y  +  L P     Y   A+                 ++ +  
Sbjct: 158 LGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKF 217

Query: 149 RYIKAYSRRATARKELGKLKESIEDSE 175
            +  A +    A  +  + ++ ++   
Sbjct: 218 PFPAASTNLQKALSKALESRDEVKTKW 244

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 0.002
 Identities = 21/127 (16%), Positives = 30/127 (23%), Gaps = 2/127 (1%)

Query: 12  FQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGNSYSRNYDPVSHI 71
           F   L             +K+    A  K    S S          G+            
Sbjct: 113 FNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAE 172

Query: 72  SSSLMNEESTPD-ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLK 129
           S      +  P       +L      +      I  Y RSIA+      A  N   A  K
Sbjct: 173 SYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232

Query: 130 LRRFQEA 136
               ++ 
Sbjct: 233 ALESRDE 239

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.0 bits (92), Expect = 3e-04
 Identities = 21/123 (17%), Positives = 41/123 (33%), Gaps = 19/123 (15%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
             +      ++ EA D YS+ I  S    ++  +    +LK    Q A  D   A     
Sbjct: 164 CADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQ 223

Query: 149 RYIKAYSRRATAR--------------KELGKLKESIEDSEFALRLEPQN----QEIKKQ 190
                    A +R               +  +L E  ++ +  +RL+        +IK+ 
Sbjct: 224 EGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKES 283

Query: 191 LAE 193
           + +
Sbjct: 284 IQQ 286

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 3e-04
 Identities = 15/85 (17%), Positives = 27/85 (31%), Gaps = 2/85 (2%)

Query: 110 SIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGK-L 167
            I  S      Y        +  R + A     +A+ L+      +  R    K L K L
Sbjct: 35  QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 94

Query: 168 KESIEDSEFALRLEPQNQEIKKQLA 192
            E +      +  +P+N ++     
Sbjct: 95  HEEMNYITAIIEEQPKNYQVWHHRR 119

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 35.9 bits (81), Expect = 0.004
 Identities = 19/99 (19%), Positives = 36/99 (36%), Gaps = 1/99 (1%)

Query: 89  ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD 147
           E G           A + +S+++A+ P     +    +   +   F  A +     L LD
Sbjct: 42  ERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD 101

Query: 148 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186
             Y  A+  R  A    G+ K + +D     + +P +  
Sbjct: 102 PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPF 140

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	372
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.81
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.8
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.76
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.75
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.75
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.73
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.73
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.72
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.72
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.71
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.7
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.7
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.68
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.67
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.67
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.67
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.67
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.64
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.63
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.61
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.6
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.59
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.55
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.54
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.51
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.49
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.49
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.49
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.48
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.48
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.47
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.38
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.31
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.31
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.29
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.29
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.29
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.26
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.23
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.2
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.18
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.1
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.97
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.96
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.95
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.86
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.86
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.72
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.66
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.6
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.56
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.4
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.3
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.04
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.79
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.3
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	86.01
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	80.72

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=3.8e-19  Score=141.10  Aligned_cols=112  Identities=32%  Similarity=0.524  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 017383           84 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARK  162 (372)
Q Consensus        84 a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~  162 (372)
                      +.-++..|+.++..|+|++|+.+|+++|..+|+ +.+|.++|.||..+|++++|+.+|.+++.++|+++.+|+++|.++.
T Consensus         3 ~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~   82 (117)
T d1elwa_           3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE   82 (117)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHH
Confidence            344678999999999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHH
Q 017383          163 ELGKLKESIEDSEFALRLEPQNQEIKKQLAEVK  195 (372)
Q Consensus       163 ~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~  195 (372)
                      .+|++++|+.+|+++++++|+++.++..+..+.
T Consensus        83 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          83 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  115 (117)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence            999999999999999999999999988887764

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.5e-18  Score=144.81  Aligned_cols=119  Identities=34%  Similarity=0.633  Sum_probs=111.7

Q ss_pred             hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 017383           83 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATAR  161 (372)
Q Consensus        83 ~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~  161 (372)
                      .+..++..|+.|++.|+|++|+.+|+++++++|+ +.+|+++|.||+.+|++++|+.+|.++++++|++..+|+++|.++
T Consensus         9 ~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~   88 (159)
T d1a17a_           9 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN   88 (159)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHH
Confidence            4556889999999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHH
Q 017383          162 KELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKE  201 (372)
Q Consensus       162 ~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~~~~~  201 (372)
                      ..+|++++|+.+|++++.++|++..++..+..+...+++.
T Consensus        89 ~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~  128 (159)
T d1a17a_          89 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQK  128 (159)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999988888776655543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.76  E-value=1.1e-17  Score=138.88  Aligned_cols=118  Identities=27%  Similarity=0.334  Sum_probs=107.6

Q ss_pred             hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-----------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 017383           83 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-----------------AVAYANRAMAYLKLRRFQEAEDDCTEALN  145 (372)
Q Consensus        83 ~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-----------------~~~~~~la~~~~~~g~~~eA~~~~~~Al~  145 (372)
                      .+..++..|+.+++.|+|.+|+.+|++++.+.+.                 ..++.|+|.||+++|+|++|+.+|++||.
T Consensus        16 ~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~   95 (153)
T d2fbna1          16 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK   95 (153)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccc
Confidence            4556889999999999999999999999987653                 24788999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHH
Q 017383          146 LDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEK  200 (372)
Q Consensus       146 l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~~~~  200 (372)
                      ++|+++++|+++|.++..+|++++|+.+|++++.++|+|.++...+..+...+++
T Consensus        96 ~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~~  150 (153)
T d2fbna1          96 IDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKE  150 (153)
T ss_dssp             HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999888877665543

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=2e-18  Score=148.25  Aligned_cols=104  Identities=37%  Similarity=0.567  Sum_probs=99.6

Q ss_pred             chHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 017383           82 PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATA  160 (372)
Q Consensus        82 ~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~  160 (372)
                      +++..++..|+.|++.|+|++|+.+|+++|.++|+ +.+|.++|.||..+|+|++|+.+|++|+.++|+++.+|+++|.+
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~   81 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC   81 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence            35677889999999999999999999999999999 99999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHccCCCcH
Q 017383          161 RKELGKLKESIEDSEFALRLEPQNQ  185 (372)
Q Consensus       161 ~~~lg~~~~A~~~~~~al~l~P~~~  185 (372)
                      |..+|++++|+.+|++++.++|++.
T Consensus        82 ~~~l~~~~~A~~~~~~al~l~p~~~  106 (201)
T d2c2la1          82 QLEMESYDEAIANLQRAYSLAKEQR  106 (201)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHCCCHHHHHHHHHHHHHhCcccH
Confidence            9999999999999999999988654

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.9e-17  Score=139.91  Aligned_cols=120  Identities=31%  Similarity=0.408  Sum_probs=109.9

Q ss_pred             hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC----------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 017383           83 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----------------AVAYANRAMAYLKLRRFQEAEDDCTEALNL  146 (372)
Q Consensus        83 ~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~----------------~~~~~~la~~~~~~g~~~eA~~~~~~Al~l  146 (372)
                      .+..++..|+.++..|+|++|+.+|+++|.+.|.                ..+|.++|.||+++|+|++|+.+|+++|.+
T Consensus        12 ~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~   91 (170)
T d1p5qa1          12 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL   91 (170)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc
Confidence            4566889999999999999999999999998764                367889999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHH
Q 017383          147 DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEV  202 (372)
Q Consensus       147 ~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~~~~~~  202 (372)
                      +|+++.+|+++|.++..+|++++|+.+|++++.++|+|+.+...+..+...+....
T Consensus        92 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~  147 (170)
T d1p5qa1          92 DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQL  147 (170)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999988888876665443

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.73  E-value=5.1e-17  Score=136.84  Aligned_cols=118  Identities=30%  Similarity=0.412  Sum_probs=107.1

Q ss_pred             hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC----------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 017383           83 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----------------AVAYANRAMAYLKLRRFQEAEDDCTEALNL  146 (372)
Q Consensus        83 ~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~----------------~~~~~~la~~~~~~g~~~eA~~~~~~Al~l  146 (372)
                      .+..++..|+.+++.|+|.+|+.+|++||...+.                ..+|.|+|.||+++|+|.+|+.+|++++.+
T Consensus        14 ~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l   93 (168)
T d1kt1a1          14 QAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL   93 (168)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhc
Confidence            4566889999999999999999999999975332                366889999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHH
Q 017383          147 DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEK  200 (372)
Q Consensus       147 ~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~~~~  200 (372)
                      +|++..+|+++|.++..+|++++|+.+|++++.++|++..+...+..+...+.+
T Consensus        94 ~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~  147 (168)
T d1kt1a1          94 DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKE  147 (168)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999998888877665543

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=2.3e-17  Score=153.08  Aligned_cols=133  Identities=13%  Similarity=0.070  Sum_probs=124.1

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhh-cHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQK-KFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE  137 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g-~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~  137 (372)
                      ..+.+++|+..++++++++|.+..+  |+.+|.++...| ++++|+.+|+++++++|+ ..+|.++|.++..+|++++|+
T Consensus        55 ~~e~~~~Al~~~~~ai~lnP~~~~a--~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl  132 (315)
T d2h6fa1          55 RDERSERAFKLTRDAIELNAANYTV--WHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQEL  132 (315)
T ss_dssp             HTCCCHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHH
T ss_pred             hCCchHHHHHHHHHHHHHCCCChHH--HHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHH
Confidence            5578999999999999999996555  779999999987 599999999999999999 999999999999999999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHH
Q 017383          138 DDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV  194 (372)
Q Consensus       138 ~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a  194 (372)
                      .++.++++++|++..+|+++|.++..+|++++|+.+|++++.++|.+..++..++.+
T Consensus       133 ~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~  189 (315)
T d2h6fa1         133 EFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFV  189 (315)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999887655544

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.8e-17  Score=152.44  Aligned_cols=129  Identities=17%  Similarity=0.237  Sum_probs=119.9

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~  138 (372)
                      ..+.+.+|+..|.+++..+|....+..+..+|.++...|++++|+.+|++++..+|+ +.+|.++|.+|..+|++++|+.
T Consensus       148 ~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~  227 (323)
T d1fcha_         148 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVA  227 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHH
Confidence            346788899999999999998888888899999999999999999999999999999 9999999999999999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHH
Q 017383          139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK  188 (372)
Q Consensus       139 ~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~  188 (372)
                      +|+++++++|+++.+|+++|.++..+|++++|+..|++++.++|++..+.
T Consensus       228 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~  277 (323)
T d1fcha_         228 AYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPR  277 (323)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC----
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhh
Confidence            99999999999999999999999999999999999999999999987764

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=9.8e-18  Score=155.65  Aligned_cols=133  Identities=23%  Similarity=0.246  Sum_probs=77.9

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~  138 (372)
                      ..|++++|+..|+++++++|++..+  +..+|.++...|++.+|+.+|+.++...|. ..++..+|.++..+|++++|+.
T Consensus       249 ~~~~~~~A~~~~~~al~~~p~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  326 (388)
T d1w3ba_         249 EQGLIDLAIDTYRRAIELQPHFPDA--YCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVR  326 (388)
T ss_dssp             HTTCHHHHHHHHHHHHHTCSSCHHH--HHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHH
Confidence            4455556666666666655553333  445566666666666666666666555555 5555556666666666666666


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHH
Q 017383          139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV  194 (372)
Q Consensus       139 ~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a  194 (372)
                      .|+++++++|+++.+++++|.++..+|++++|+.+|+++++++|++..++..++.+
T Consensus       327 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~  382 (388)
T d1w3ba_         327 LYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT  382 (388)
T ss_dssp             HHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            66666666666666666666666666666666666666666666665555555444

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.71  E-value=1.5e-16  Score=133.93  Aligned_cols=114  Identities=29%  Similarity=0.452  Sum_probs=104.3

Q ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHHHccC----------------CC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 017383           86 SEKELGNECFKQKKFKEAIDCYSRSIALS----------------PT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD  148 (372)
Q Consensus        86 ~~~~~g~~~~~~g~~~~Ai~~y~~al~~~----------------p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p  148 (372)
                      .+...|+.++..|+|.+|+.+|+++|.+.                |. ..++.++|.||.++|+|++|+.+|++||+++|
T Consensus        29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p  108 (169)
T d1ihga1          29 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP  108 (169)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhh
Confidence            36788999999999999999999998642                33 66889999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHH
Q 017383          149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYE  199 (372)
Q Consensus       149 ~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~~~  199 (372)
                      +++.+|+++|.++..+|++++|+.+|+++++++|++..+...+..+...+.
T Consensus       109 ~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~  159 (169)
T d1ihga1         109 SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIK  159 (169)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999888887766554

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.70  E-value=1.2e-16  Score=142.05  Aligned_cols=133  Identities=17%  Similarity=0.072  Sum_probs=119.9

Q ss_pred             CCCCchhhHHHHHhhhhcCCCC--chHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEEST--PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEA  136 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~--~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA  136 (372)
                      ...+.+.|+..+++++...+..  ..+.+++.+|.+|+..|+|++|+.+|+++|.++|+ +.+|+++|.+|..+|++++|
T Consensus        11 ~~~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A   90 (259)
T d1xnfa_          11 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA   90 (259)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             ccHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHh
Confidence            4456778899999998765432  25667899999999999999999999999999999 99999999999999999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHH
Q 017383          137 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLA  192 (372)
Q Consensus       137 ~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~  192 (372)
                      +.+|++++.++|+++.+++++|.++..+|++++|+..|+++++++|++......+.
T Consensus        91 ~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  146 (259)
T d1xnfa_          91 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLY  146 (259)
T ss_dssp             HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999877654443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.8e-16  Score=127.32  Aligned_cols=115  Identities=25%  Similarity=0.429  Sum_probs=102.3

Q ss_pred             hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC-------HHHH
Q 017383           83 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY-------IKAY  154 (372)
Q Consensus        83 ~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~-------~~a~  154 (372)
                      +|..++++|+.++..|+|++|+.+|+++|.++|+ ..++.++|.||..+|+|++|+.+|++|+.++|.+       ..+|
T Consensus         3 ~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~   82 (128)
T d1elra_           3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY   82 (128)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            4667889999999999999999999999999999 9999999999999999999999999999999876       4578


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHH
Q 017383          155 SRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLY  198 (372)
Q Consensus       155 ~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~~  198 (372)
                      +++|.++..+|++++|+.+|++++..+++ ++....+..+...+
T Consensus        83 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~~~k~l  125 (128)
T d1elra_          83 ARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAEKIL  125 (128)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHH
Confidence            88999999999999999999999999875 55666666554433

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=4.1e-16  Score=134.22  Aligned_cols=120  Identities=20%  Similarity=0.184  Sum_probs=108.0

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~  138 (372)
                      ..|+|++|+..|.++   .+.  .+.+++++|.+|+..|+|++|+.+|++||+++|+ +.+|+++|.||..+|+|++|+.
T Consensus        17 ~~~d~~~Al~~~~~i---~~~--~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~   91 (192)
T d1hh8a_          17 DKKDWKGALDAFSAV---QDP--HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIK   91 (192)
T ss_dssp             HTTCHHHHHHHHHTS---SSC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HCCCHHHHHHHHHhc---CCC--CHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHH
Confidence            668999999999875   333  3456889999999999999999999999999999 9999999999999999999999


Q ss_pred             HHHHHHhcCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCc
Q 017383          139 DCTEALNLDDRY----------------IKAYSRRATARKELGKLKESIEDSEFALRLEPQN  184 (372)
Q Consensus       139 ~~~~Al~l~p~~----------------~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~  184 (372)
                      +|++|+...+.+                ..+++++|.++..+|++++|+..|.+++.+.|..
T Consensus        92 ~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_          92 DLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             HHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            999999875532                5789999999999999999999999999999874

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.9e-16  Score=146.81  Aligned_cols=172  Identities=9%  Similarity=0.061  Sum_probs=143.6

Q ss_pred             HHHHHhhHHHHHHHHHHHHHHhhhcCCCCCccccccccccCCCCCCCC-CCC-CchhhHHHHHhhhhcCCCCchHHHHHH
Q 017383           12 FQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYS-RNYDPVSHISSSLMNEESTPDATSEKE   89 (372)
Q Consensus        12 l~~~~~~l~~~e~~ik~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g-~~~~A~~~~~~al~~~p~~~~a~~~~~   89 (372)
                      ++..+...+.++++++..+..+.-.+....-.         ...|..+ .+| ++++|+..+++++..+|++..+  +..
T Consensus        49 ~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~---------~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a--~~~  117 (315)
T d2h6fa1          49 FRAVLQRDERSERAFKLTRDAIELNAANYTVW---------HFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV--WHH  117 (315)
T ss_dssp             HHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHH---------HHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH--HHH
T ss_pred             HHHHHHhCCchHHHHHHHHHHHHHCCCChHHH---------HHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhH--HHH
Confidence            33445566677888888888887665221111         1111222 444 6899999999999999996555  779


Q ss_pred             HHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--
Q 017383           90 LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGK--  166 (372)
Q Consensus        90 ~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~--  166 (372)
                      +|.++...|++++|+.+|.++++++|+ ..+|.++|.++..+|++++|+.+|+++|+++|++..+|+++|.++..+|.  
T Consensus       118 ~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~  197 (315)
T d2h6fa1         118 RRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYN  197 (315)
T ss_dssp             HHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSC
T ss_pred             HhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccc
Confidence            999999999999999999999999999 99999999999999999999999999999999999999999999999887  


Q ss_pred             ----HHHHHHHHHHHHccCCCcHHHHHHHHHH
Q 017383          167 ----LKESIEDSEFALRLEPQNQEIKKQLAEV  194 (372)
Q Consensus       167 ----~~~A~~~~~~al~l~P~~~~~~~~l~~a  194 (372)
                          +++|+..+.+++.++|++..++..+..+
T Consensus       198 ~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~l  229 (315)
T d2h6fa1         198 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGI  229 (315)
T ss_dssp             SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             hhhhhHHhHHHHHHHHHhCCCchHHHHHHHHH
Confidence                6899999999999999999888766544

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=3.2e-16  Score=143.97  Aligned_cols=181  Identities=11%  Similarity=0.055  Sum_probs=141.3

Q ss_pred             HHhhHHHHHHHHHHHHHHhhhcCCCCCccccccccccCCCCCCCC-CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHH
Q 017383           15 FLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNE   93 (372)
Q Consensus        15 ~~~~l~~~e~~ik~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~   93 (372)
                      .+-..++++++++..+..++..+....         +...+|..| ..|++++|+..|.+++.++|.+...  +..+|.+
T Consensus        28 ~~~~~g~~~~A~~~~~~al~~~P~~~~---------a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~--~~~la~~   96 (323)
T d1fcha_          28 RRLQEGDLPNAVLLFEAAVQQDPKHME---------AWQYLGTTQAENEQELLAISALRRCLELKPDNQTA--LMALAVS   96 (323)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHSCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH--HHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHcCChHHHHHHHHhhhccccccccc--ccccccc
Confidence            334456788888888887766652111         112223334 7799999999999999999985544  6688999


Q ss_pred             HHHhhcHHHHHHHHHHHHcc-------------------------------------------------CCC---HHHHH
Q 017383           94 CFKQKKFKEAIDCYSRSIAL-------------------------------------------------SPT---AVAYA  121 (372)
Q Consensus        94 ~~~~g~~~~Ai~~y~~al~~-------------------------------------------------~p~---~~~~~  121 (372)
                      |...|++++|+.+|.+++..                                                 +|+   +.++.
T Consensus        97 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~  176 (323)
T d1fcha_          97 FTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQC  176 (323)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHH
T ss_pred             ccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccch
Confidence            99888888887777666543                                                 443   56678


Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHH----------H
Q 017383          122 NRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQ----------L  191 (372)
Q Consensus       122 ~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~----------l  191 (372)
                      ++|.++..+|++++|+..|++++.++|+++.+|+.+|.++..+|++++|+.+|+++++++|++..++..          +
T Consensus       177 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~  256 (323)
T d1fcha_         177 GLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAH  256 (323)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred             hhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCH
Confidence            899999999999999999999999999999999999999999999999999999999999999987644          4


Q ss_pred             HHHHHHHHHHHHhhh
Q 017383          192 AEVKSLYEKEVFQKA  206 (372)
Q Consensus       192 ~~a~~~~~~~~~~~~  206 (372)
                      .+|...|.+++...+
T Consensus       257 ~~A~~~~~~al~l~p  271 (323)
T d1fcha_         257 REAVEHFLEALNMQR  271 (323)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCC
Confidence            455555555555544

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=3e-16  Score=145.42  Aligned_cols=183  Identities=22%  Similarity=0.188  Sum_probs=144.7

Q ss_pred             HHHhhHHHHHHHHHHHHHHhhhcCCCCCccccccccccCCCCCCCC-CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHH
Q 017383           14 GFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGN   92 (372)
Q Consensus        14 ~~~~~l~~~e~~ik~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~   92 (372)
                      ........+++++......+...+....         .....|..| ..|++++|+..|.+++..++..  +..+..+|.
T Consensus       177 ~~~~~~~~~~~A~~~~~~al~~~p~~~~---------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~  245 (388)
T d1w3ba_         177 CVFNAQGEIWLAIHHFEKAVTLDPNFLD---------AYINLGNVLKEARIFDRAVAAYLRALSLSPNH--AVVHGNLAC  245 (388)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTC--HHHHHHHHH
T ss_pred             ccccccCcHHHHHHHHHHHHHhCcccHH---------HHHHHhhhhhccccHHHHHHHHHHhHHHhhhH--HHHHHHHHH
Confidence            3444455666666666555544331100         001122233 6789999999999999999884  444779999


Q ss_pred             HHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 017383           93 ECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESI  171 (372)
Q Consensus        93 ~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~  171 (372)
                      +++..|++++|+.+|+++++++|+ +.++.++|.++..+|++.+|+..++.++...|.+..++..+|.++..+|++++|+
T Consensus       246 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  325 (388)
T d1w3ba_         246 VYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAV  325 (388)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHH
Confidence            999999999999999999999999 9999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHccCCCcHHHHHHH----------HHHHHHHHHHHHhhhh
Q 017383          172 EDSEFALRLEPQNQEIKKQL----------AEVKSLYEKEVFQKAS  207 (372)
Q Consensus       172 ~~~~~al~l~P~~~~~~~~l----------~~a~~~~~~~~~~~~~  207 (372)
                      ..|+++++++|++..++..+          .+|...|++++..+|.
T Consensus       326 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~  371 (388)
T d1w3ba_         326 RLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT  371 (388)
T ss_dssp             HHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            99999999999998886444          4445555555555443

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=4.3e-16  Score=138.50  Aligned_cols=102  Identities=20%  Similarity=0.082  Sum_probs=89.7

Q ss_pred             CCCCC-CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcC
Q 017383           55 SPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRR  132 (372)
Q Consensus        55 ~~~~y-~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~  132 (372)
                      +|..| ..|++++|+..|++++.++|+++.+  ++.+|.+|...|++++|+.+|++++.++|+ +.++.++|.+|..+|+
T Consensus        43 ~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a--~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~  120 (259)
T d1xnfa_          43 RGVLYDSLGLRALARNDFSQALAIRPDMPEV--FNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR  120 (259)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCCCCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHCCCHHHHHHHHHHhhccCCCCHHH--HhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhh
Confidence            34555 7899999999999999999996555  779999999999999999999999999999 9999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHH
Q 017383          133 FQEAEDDCTEALNLDDRYIKAYSRRA  158 (372)
Q Consensus       133 ~~eA~~~~~~Al~l~p~~~~a~~~lg  158 (372)
                      +++|+.+|+++++++|++...+..++
T Consensus       121 ~~~A~~~~~~al~~~p~~~~~~~~~~  146 (259)
T d1xnfa_         121 DKLAQDDLLAFYQDDPNDPFRSLWLY  146 (259)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccccHHHHHHHH
Confidence            99999999999998876543333333

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.2e-15  Score=121.56  Aligned_cols=110  Identities=13%  Similarity=0.034  Sum_probs=98.9

Q ss_pred             HHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHH---hcCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHH
Q 017383           89 ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLK---LRRFQEAEDDCTEALNLDDRY--IKAYSRRATARK  162 (372)
Q Consensus        89 ~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~---~g~~~eA~~~~~~Al~l~p~~--~~a~~~lg~~~~  162 (372)
                      ++++.+...++|++|.+.|++++.++|. +.+++|+|.|+++   .+++++|+..|++++..+|..  ..+|+++|.+|.
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~   83 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY   83 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence            6788999999999999999999999998 9999999999987   456678999999999998765  568999999999


Q ss_pred             HcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHH
Q 017383          163 ELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLY  198 (372)
Q Consensus       163 ~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~~  198 (372)
                      .+|++++|+.+|+++|.++|++.++...+..+....
T Consensus        84 ~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~  119 (122)
T d1nzna_          84 RLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAM  119 (122)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999887776655443

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.2e-15  Score=120.43  Aligned_cols=101  Identities=17%  Similarity=0.176  Sum_probs=95.2

Q ss_pred             CCCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 017383           59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE  137 (372)
Q Consensus        59 y~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~  137 (372)
                      +..|+|++|+..|.++|..+|.++.+  +..+|.+|...|+|++|+.+|.+++.++|+ +.+|+++|.++..+|++++|+
T Consensus        14 ~~~g~~~eAi~~~~~al~~~p~~~~~--~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~   91 (117)
T d1elwa_          14 LSVGNIDDALQCYSEAIKLDPHNHVL--YSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAK   91 (117)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHhcCCcchhh--hhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHHHH
Confidence            47899999999999999999995554  779999999999999999999999999999 999999999999999999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHH
Q 017383          138 DDCTEALNLDDRYIKAYSRRATAR  161 (372)
Q Consensus       138 ~~~~~Al~l~p~~~~a~~~lg~~~  161 (372)
                      .+|+++++++|+++.++..++.+.
T Consensus        92 ~~~~~a~~~~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          92 RTYEEGLKHEANNPQLKEGLQNME  115 (117)
T ss_dssp             HHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHh
Confidence            999999999999999999988764

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.61  E-value=2.2e-15  Score=118.00  Aligned_cols=92  Identities=15%  Similarity=0.062  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 017383           87 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG  165 (372)
Q Consensus        87 ~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg  165 (372)
                      .+.+|..+++.|++++|+.+|++++..+|+ +.+|.++|.++..+|++++|+.+++++++++|++..+|+.+|.+|..+|
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g   98 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH   98 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCC
Confidence            568899999999999999999999999999 9999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHH
Q 017383          166 KLKESIEDSEFAL  178 (372)
Q Consensus       166 ~~~~A~~~~~~al  178 (372)
                      ++++|+..|++.|
T Consensus        99 ~~~~A~~~l~~~l  111 (112)
T d1hxia_          99 NANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999999986

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=3.1e-15  Score=124.26  Aligned_cols=103  Identities=15%  Similarity=0.122  Sum_probs=95.8

Q ss_pred             CCCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 017383           59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE  137 (372)
Q Consensus        59 y~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~  137 (372)
                      |..|+|++|+.+|++++.++|.+..  .|.++|.+|+..|++++|+.+|.++|+++|+ ..+|.++|.+|..+|++++|+
T Consensus        21 ~~~~~y~~A~~~~~~al~~~p~~~~--~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~eA~   98 (159)
T d1a17a_          21 FKAKDYENAIKFYSQAIELNPSNAI--YYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAAL   98 (159)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHcCCHHHHHHHhhhccccchhhhh--hhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHHHHH
Confidence            5889999999999999999999544  4779999999999999999999999999999 999999999999999999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHH
Q 017383          138 DDCTEALNLDDRYIKAYSRRATARKE  163 (372)
Q Consensus       138 ~~~~~Al~l~p~~~~a~~~lg~~~~~  163 (372)
                      .+|++++.++|++..++..++.+...
T Consensus        99 ~~~~~a~~~~p~~~~~~~~l~~~~~~  124 (159)
T d1a17a_          99 RDYETVVKVKPHDKDAKMKYQECNKI  124 (159)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            99999999999999998888776543

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.4e-14  Score=124.36  Aligned_cols=100  Identities=27%  Similarity=0.263  Sum_probs=91.8

Q ss_pred             hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 017383           83 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARK  162 (372)
Q Consensus        83 ~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~  162 (372)
                      ++..+++.|..++..|+|+.|+.+|.++  .+|++.+|+++|.+|+.+|+|++|+.+|++|++++|+++.+|+++|.++.
T Consensus         4 ~~~~l~~~g~~~~~~~d~~~Al~~~~~i--~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~   81 (192)
T d1hh8a_           4 EAISLWNEGVLAADKKDWKGALDAFSAV--QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY   81 (192)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTS--SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence            4566778999999999999999999874  23458899999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHccCCCc
Q 017383          163 ELGKLKESIEDSEFALRLEPQN  184 (372)
Q Consensus       163 ~lg~~~~A~~~~~~al~l~P~~  184 (372)
                      .+|++++|+.+|++++...+.+
T Consensus        82 ~~g~~~~A~~~~~kAl~~~~~n  103 (192)
T d1hh8a_          82 QTEKYDLAIKDLKEALIQLRGN  103 (192)
T ss_dssp             HTTCHHHHHHHHHHHHHTTTTC
T ss_pred             hhccHHHHHHHHHHHHHhCccC
Confidence            9999999999999999877654

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.55  E-value=2.2e-14  Score=117.60  Aligned_cols=106  Identities=19%  Similarity=0.101  Sum_probs=90.4

Q ss_pred             HHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHh----------cCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 017383           92 NECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKL----------RRFQEAEDDCTEALNLDDRYIKAYSRRATA  160 (372)
Q Consensus        92 ~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~----------g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~  160 (372)
                      ..|-+.+.|++|+.+|+++++++|+ +.+++++|.++..+          +.+++|+..|++|++++|+++.+|+++|.+
T Consensus         5 ~~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~   84 (145)
T d1zu2a1           5 TEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNA   84 (145)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHH
Confidence            3466778899999999999999998 89999999988854          456889999999999999999999999999


Q ss_pred             HHHcCC-----------HHHHHHHHHHHHccCCCcHHHHHHHHHHHHH
Q 017383          161 RKELGK-----------LKESIEDSEFALRLEPQNQEIKKQLAEVKSL  197 (372)
Q Consensus       161 ~~~lg~-----------~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~  197 (372)
                      |..+|+           +++|+.+|++++.++|++..++..|+.+.+.
T Consensus        85 y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka  132 (145)
T d1zu2a1          85 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKA  132 (145)
T ss_dssp             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTH
T ss_pred             HHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHH
Confidence            988764           6899999999999999999888777655443

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.54  E-value=1.4e-15  Score=130.13  Aligned_cols=111  Identities=11%  Similarity=0.039  Sum_probs=95.1

Q ss_pred             CCCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 017383           59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE  137 (372)
Q Consensus        59 y~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~  137 (372)
                      |..|+|++|+..|.++|.++|.++.+  |.++|.+|+..|+|++|+.+|++|++++|+ +.+|+++|.+|..+|+|++|+
T Consensus        15 ~~~g~~~~Ai~~~~kal~~~p~~~~~--~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l~~~~~A~   92 (201)
T d2c2la1          15 FVGRKYPEAAACYGRAITRNPLVAVY--YTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAI   92 (201)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCSCCHHH--HHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHH--HHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence            47899999999999999999995555  779999999999999999999999999999 999999999999999999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 017383          138 DDCTEALNLDDRYIKAYSRRATARKELGKLKESI  171 (372)
Q Consensus       138 ~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~  171 (372)
                      .+|++|+.++|++...+...+..+...+....+.
T Consensus        93 ~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~  126 (201)
T d2c2la1          93 ANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWN  126 (201)
T ss_dssp             HHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHHHHHhHHH
Confidence            9999999999876555544454444444444443

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=5e-14  Score=118.42  Aligned_cols=113  Identities=16%  Similarity=0.155  Sum_probs=101.3

Q ss_pred             CCCCCchhhHHHHHhhhhcCCCCch-------------HHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHH
Q 017383           59 NSYSRNYDPVSHISSSLMNEESTPD-------------ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRA  124 (372)
Q Consensus        59 y~~g~~~~A~~~~~~al~~~p~~~~-------------a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la  124 (372)
                      |..|+|++|+..|.+++...|....             ...+.++|.+|++.|+|++|+.+++++|.++|+ +.+++++|
T Consensus        24 ~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g  103 (170)
T d1p5qa1          24 FKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRG  103 (170)
T ss_dssp             HHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHH
Confidence            5789999999999999998765421             234678999999999999999999999999998 99999999


Q ss_pred             HHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 017383          125 MAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESI  171 (372)
Q Consensus       125 ~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~  171 (372)
                      .||..+|+|++|+.+|++++.++|++..+...++.++..++...+..
T Consensus       104 ~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e  150 (170)
T d1p5qa1         104 EAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE  150 (170)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999988877766543

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.49  E-value=1.1e-13  Score=116.07  Aligned_cols=111  Identities=15%  Similarity=0.174  Sum_probs=98.7

Q ss_pred             CCCCCchhhHHHHHhhhhcCCCCc-------------hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHH
Q 017383           59 NSYSRNYDPVSHISSSLMNEESTP-------------DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRA  124 (372)
Q Consensus        59 y~~g~~~~A~~~~~~al~~~p~~~-------------~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la  124 (372)
                      |..|+|.+|+..|.+++...+...             ....+.++|.+|+++|+|.+|+.+|++++.++|+ ..+|+++|
T Consensus        26 ~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~  105 (168)
T d1kt1a1          26 FKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRG  105 (168)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHH
Confidence            588999999999999997554332             2235678999999999999999999999999999 99999999


Q ss_pred             HHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 017383          125 MAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKE  169 (372)
Q Consensus       125 ~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~  169 (372)
                      .||..+|+|++|+.+|.+++.++|++..++..++.+...++.+.+
T Consensus       106 ~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e  150 (168)
T d1kt1a1         106 EAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNE  150 (168)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHH
Confidence            999999999999999999999999999999999998877776654

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.49  E-value=2.7e-14  Score=118.27  Aligned_cols=103  Identities=25%  Similarity=0.262  Sum_probs=89.4

Q ss_pred             hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 017383           83 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------------AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR  149 (372)
Q Consensus        83 ~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-------------~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~  149 (372)
                      .++.+...|+.++..|+|++|+..|+++|+++|+             +.+|.++|.||..+|+|++|+.+|++++.+.|.
T Consensus         8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~   87 (156)
T d2hr2a1           8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   87 (156)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence            3444556699999999999999999999998764             367999999999999999999999999987542


Q ss_pred             -----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcH
Q 017383          150 -----------YIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ  185 (372)
Q Consensus       150 -----------~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~  185 (372)
                                 ...+++++|.+|..+|++++|+.+|++++.+.|...
T Consensus        88 ~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~  134 (156)
T d2hr2a1          88 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK  134 (156)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred             cccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence                       356789999999999999999999999999976443

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.8e-14  Score=113.41  Aligned_cols=103  Identities=10%  Similarity=0.028  Sum_probs=92.1

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHH---hhcHHHHHHHHHHHHccCCC---HHHHHHHHHHHHHhcCH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFK---QKKFKEAIDCYSRSIALSPT---AVAYANRAMAYLKLRRF  133 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~---~g~~~~Ai~~y~~al~~~p~---~~~~~~la~~~~~~g~~  133 (372)
                      ..+++++|.+.|++++..+|.++++  ++++|.++++   .+++++|+..|++++..+|+   ..+|+++|.+|..+|+|
T Consensus        11 ~~~~l~~Ae~~Y~~aL~~~p~~~~~--~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~   88 (122)
T d1nzna_          11 SVEDLLKFEKKFQSEKAAGSVSKST--QFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY   88 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCCHHH--HHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             CHHHHHHHHHHHHHHHhhCCCCHHH--HHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhh
Confidence            4578899999999999999996665  6799999986   56778899999999999986   56899999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 017383          134 QEAEDDCTEALNLDDRYIKAYSRRATARKEL  164 (372)
Q Consensus       134 ~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~l  164 (372)
                      ++|+.+|+++++++|++..+...++.+...+
T Consensus        89 ~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~  119 (122)
T d1nzna_          89 EKALKYVRGLLQTEPQNNQAKELERLIDKAM  119 (122)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999988776654

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.48  E-value=7.4e-14  Score=115.30  Aligned_cols=108  Identities=15%  Similarity=0.142  Sum_probs=96.6

Q ss_pred             CCCCCchhhHHHHHhhhhcCCCCc--------------hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHH
Q 017383           59 NSYSRNYDPVSHISSSLMNEESTP--------------DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANR  123 (372)
Q Consensus        59 y~~g~~~~A~~~~~~al~~~p~~~--------------~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~l  123 (372)
                      |..|+|.+|+..|.+++...+...              ....+.++|.+|+++|+|++|+.+|+++|+++|. ..+|+++
T Consensus        28 f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~  107 (153)
T d2fbna1          28 FKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKL  107 (153)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHh
Confidence            578999999999999998665432              1235678999999999999999999999999998 9999999


Q ss_pred             HHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 017383          124 AMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGK  166 (372)
Q Consensus       124 a~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~  166 (372)
                      |.+|..+|++++|+.+|+++++++|++..+...++.+...+++
T Consensus       108 g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~~  150 (153)
T d2fbna1         108 GVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKE  150 (153)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988776543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.48  E-value=4.1e-14  Score=115.91  Aligned_cols=113  Identities=12%  Similarity=0.054  Sum_probs=96.9

Q ss_pred             CCCC-CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHh----------hcHHHHHHHHHHHHccCCC-HHHHHHH
Q 017383           56 PSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQ----------KKFKEAIDCYSRSIALSPT-AVAYANR  123 (372)
Q Consensus        56 ~~~y-~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~----------g~~~~Ai~~y~~al~~~p~-~~~~~~l  123 (372)
                      ++.| .++.|++|+..|+++++++|++.++  +.++|.++...          +.+++|+.+|+++++++|+ +.+|+++
T Consensus         4 ~~~~~r~~~fe~A~~~~e~al~~~P~~~~~--~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~l   81 (145)
T d1zu2a1           4 ETEFDRILLFEQIRQDAENTYKSNPLDADN--LTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCI   81 (145)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hHHHHHHccHHHHHHHHHHHHhhCCcchHH--HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhH
Confidence            3444 5678999999999999999996655  66999999854          5568999999999999999 9999999


Q ss_pred             HHHHHHhcC-----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 017383          124 AMAYLKLRR-----------FQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKES  170 (372)
Q Consensus       124 a~~~~~~g~-----------~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A  170 (372)
                      |.+|..+|+           |.+|+.+|++|+.++|++..++..++.+....+.+.++
T Consensus        82 G~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~  139 (145)
T d1zu2a1          82 GNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEA  139 (145)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHH
T ss_pred             HHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999998764           79999999999999999999999999887666555554

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.47  E-value=8.8e-14  Score=116.55  Aligned_cols=113  Identities=13%  Similarity=0.166  Sum_probs=99.2

Q ss_pred             CCCCCchhhHHHHHhhhhcCCCC--------------chHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHH
Q 017383           59 NSYSRNYDPVSHISSSLMNEEST--------------PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANR  123 (372)
Q Consensus        59 y~~g~~~~A~~~~~~al~~~p~~--------------~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~l  123 (372)
                      |..|+|.+|+..|.+++...+..              ..+..+.++|.++++.|+|++|+.+|+++|+++|+ +.+|+++
T Consensus        38 ~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~  117 (169)
T d1ihga1          38 FKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRR  117 (169)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhH
Confidence            47789999999999998643211              13445788999999999999999999999999999 9999999


Q ss_pred             HHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 017383          124 AMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESI  171 (372)
Q Consensus       124 a~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~  171 (372)
                      |.+|..+|+|++|+.+|++|++++|++..++..++.+...+..+.++.
T Consensus       118 g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~~  165 (169)
T d1ihga1         118 AQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE  165 (169)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999988877666553

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=9.9e-13  Score=99.41  Aligned_cols=81  Identities=11%  Similarity=0.050  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC--------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHH
Q 017383           85 TSEKELGNECFKQKKFKEAIDCYSRSIALSPT--------AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSR  156 (372)
Q Consensus        85 ~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~--------~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~  156 (372)
                      ..++.+|.++++.|+|.+|+.+|++|+++.|.        +.++.++|.||.++|++++|+..|+++|+++|++..++.+
T Consensus         6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~N   85 (95)
T d1tjca_           6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN   85 (95)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHH
Confidence            34678899999999999999999998887432        6788888888888888888888888888888888888888


Q ss_pred             HHHHHHHcC
Q 017383          157 RATARKELG  165 (372)
Q Consensus       157 lg~~~~~lg  165 (372)
                      ++.....++
T Consensus        86 l~~~~~~l~   94 (95)
T d1tjca_          86 LKYFEYIMA   94 (95)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhC
Confidence            877665543

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=1.9e-12  Score=103.32  Aligned_cols=97  Identities=12%  Similarity=0.153  Sum_probs=84.7

Q ss_pred             CCCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC--------HHHHHHHHHHHHHh
Q 017383           59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT--------AVAYANRAMAYLKL  130 (372)
Q Consensus        59 y~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~--------~~~~~~la~~~~~~  130 (372)
                      |..|+|++|+.+|.+++.++|.+.  .++.++|.+|+..|+|++|+.+|+++|+++|+        +.+|.++|.++..+
T Consensus        15 ~~~~~y~~Ai~~y~~al~~~p~~~--~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~~~   92 (128)
T d1elra_          15 YKKKDFDTALKHYDKAKELDPTNM--TYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKE   92 (128)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHcCCHHHHHHHHHHHHHhCcccH--HHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHh
Confidence            478999999999999999999854  45779999999999999999999999999875        46788999999999


Q ss_pred             cCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 017383          131 RRFQEAEDDCTEALNLDDRYIKAYSRRA  158 (372)
Q Consensus       131 g~~~eA~~~~~~Al~l~p~~~~a~~~lg  158 (372)
                      +++++|+.+|++++..+++ ......+.
T Consensus        93 ~~~~~A~~~~~kal~~~~~-~~~~~~l~  119 (128)
T d1elra_          93 EKYKDAIHFYNKSLAEHRT-PDVLKKCQ  119 (128)
T ss_dssp             TCHHHHHHHHHHHHHHCCC-HHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCC-HHHHHHHH
Confidence            9999999999999998875 44444443

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.31  E-value=4.7e-12  Score=116.85  Aligned_cols=134  Identities=10%  Similarity=-0.052  Sum_probs=101.1

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcC------
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRR------  132 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~------  132 (372)
                      ..+++++|+..+.+++..+|....+. +...|.++...|.+++|+.++++++.++|. ..+|+++|.++..+|+      
T Consensus       121 ~~~~~~~a~~~~~~al~~~~~~~~~~-~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~  199 (334)
T d1dcea1         121 PEPNWARELELCARFLEADERNFHCW-DYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP  199 (334)
T ss_dssp             SSCCHHHHHHHHHHHHHHCTTCHHHH-HHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred             ccccHHHHHHHHHHHHhhCchhhhhh-hhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHH
Confidence            34567788888888888887754442 345677777788888888888888888887 7777777777766654      


Q ss_pred             ----------------------------------------------------------HHHHHHHHHHHHhcCCCCHHHH
Q 017383          133 ----------------------------------------------------------FQEAEDDCTEALNLDDRYIKAY  154 (372)
Q Consensus       133 ----------------------------------------------------------~~eA~~~~~~Al~l~p~~~~a~  154 (372)
                                                                                +.+|+..+.+++..+|.+..++
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~  279 (334)
T d1dcea1         200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTI  279 (334)
T ss_dssp             CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHH
Confidence                                                                      5566666677777777778888


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHH
Q 017383          155 SRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV  194 (372)
Q Consensus       155 ~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a  194 (372)
                      +.+|.++..+|++++|+.+|+++++++|.+...+..+...
T Consensus       280 ~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~  319 (334)
T d1dcea1         280 ILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK  319 (334)
T ss_dssp             HHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHH
Confidence            8888888888888888888888888888877777666443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.29  E-value=4.7e-12  Score=98.51  Aligned_cols=83  Identities=16%  Similarity=0.052  Sum_probs=78.8

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~  138 (372)
                      ..|++.+|+..|++++..+|++..+  +..+|.++...|++++|+.+|+++++++|+ ..+|.++|.+|..+|++++|++
T Consensus        28 ~~g~~~~A~~~~~~al~~~p~~~~a--~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~~~A~~  105 (112)
T d1hxia_          28 KLANLAEAALAFEAVCQKEPEREEA--WRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALA  105 (112)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHhhhcccccccchh--hhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCHHHHHH
Confidence            7899999999999999999996555  779999999999999999999999999999 9999999999999999999999


Q ss_pred             HHHHHH
Q 017383          139 DCTEAL  144 (372)
Q Consensus       139 ~~~~Al  144 (372)
                      .+++.|
T Consensus       106 ~l~~~l  111 (112)
T d1hxia_         106 SLRAWL  111 (112)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            999976

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=8.3e-12  Score=94.16  Aligned_cols=82  Identities=16%  Similarity=0.094  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHH
Q 017383          117 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY-------IKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKK  189 (372)
Q Consensus       117 ~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~-------~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~  189 (372)
                      ++-++++|.+++..|+|.+|+.+|++|+++.|.+       ..++.++|.++..+|++++|+.+|+++|+++|+++.+..
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~   84 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence            4567899999999999999999999999986543       788999999999999999999999999999999999998


Q ss_pred             HHHHHHHHH
Q 017383          190 QLAEVKSLY  198 (372)
Q Consensus       190 ~l~~a~~~~  198 (372)
                      ++......+
T Consensus        85 Nl~~~~~~l   93 (95)
T d1tjca_          85 NLKYFEYIM   93 (95)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            887665544

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.4e-12  Score=127.92  Aligned_cols=134  Identities=12%  Similarity=-0.025  Sum_probs=93.8

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHhcCHHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDD  139 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~~la~~~~~~g~~~eA~~~  139 (372)
                      ..+.|..|+..|.+++.++|....+  +.++|..+.+.|++++|+..|.+++..++ ..++.++|.++..+|+|++|+.+
T Consensus        98 a~~~Y~~ai~~l~~~~~l~~~~~~~--~~~lg~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~LG~l~~~~~~~~~A~~~  174 (497)
T d1ya0a1          98 ASGFYTQLLQELCTVFNVDLPCRVK--SSQLGIISNKQTHTSAIVKPQSSSCSYIC-QHCLVHLGDIARYRNQTSQAESY  174 (497)
T ss_dssp             HHHHHHHHHHHHTC---------------------------------CCHHHHHHH-HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCChhhHHH--HHHhHHHHHhCCCHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHcccHHHHHHH
Confidence            3466788888888888888875444  67999999999999999999999998766 46788999999999999999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHH
Q 017383          140 CTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS  196 (372)
Q Consensus       140 ~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~  196 (372)
                      |.+|+.++|++..+|+++|.++...|++.+|+.+|.+++.++|.++.++.+|..+..
T Consensus       175 y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~  231 (497)
T d1ya0a1         175 YRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS  231 (497)
T ss_dssp             HHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999988877654

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.26  E-value=5.1e-11  Score=109.71  Aligned_cols=133  Identities=11%  Similarity=0.061  Sum_probs=115.4

Q ss_pred             chhhHHHHHhhhhcCCCCchHHHHHHHHHH----------HHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcC
Q 017383           64 NYDPVSHISSSLMNEESTPDATSEKELGNE----------CFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRR  132 (372)
Q Consensus        64 ~~~A~~~~~~al~~~p~~~~a~~~~~~g~~----------~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~  132 (372)
                      .++|+..++++|..+|++..++  +.++.+          +...|++.+|+.+|++++..+|+ ..+|+.+|.++..+++
T Consensus        45 ~~~al~~~~~~l~~~P~~~~a~--~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~  122 (334)
T d1dcea1          45 DESVLELTSQILGANPDFATLW--NCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE  122 (334)
T ss_dssp             SHHHHHHHHHHHHHCTTCHHHH--HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSS
T ss_pred             cHHHHHHHHHHHHHCCCcHHHH--HHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhcc
Confidence            4789999999999999976663  344443          44566799999999999999998 9999999999888875


Q ss_pred             --HHHHHHHHHHHHhcCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHH
Q 017383          133 --FQEAEDDCTEALNLDDRYIKAY-SRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLY  198 (372)
Q Consensus       133 --~~eA~~~~~~Al~l~p~~~~a~-~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~~  198 (372)
                        +++|+..+.+++.++|.+..++ +.+|.++...|++++|+..+++++.++|.+..++..++.+....
T Consensus       123 ~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~  191 (334)
T d1dcea1         123 PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL  191 (334)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence              8999999999999999998886 56789999999999999999999999999999998887775544

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.23  E-value=6.7e-12  Score=113.90  Aligned_cols=125  Identities=11%  Similarity=-0.047  Sum_probs=66.1

Q ss_pred             CCCCchhhHHHHHhhhhcCCCC----chHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-------HHHHHHHHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEEST----PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------AVAYANRAMAYL  128 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~----~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-------~~~~~~la~~~~  128 (372)
                      ..|+|++|+..|.+++++....    ..+..+.++|.+|...|++++|+.+|++++.+.+.       ..++.++|.+|.
T Consensus        49 ~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~  128 (290)
T d1qqea_          49 LRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILE  128 (290)
T ss_dssp             HTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHh
Confidence            4455566666666655532111    12334555566666666666666666665554322       444555555553


Q ss_pred             H-hcCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCc
Q 017383          129 K-LRRFQEAEDDCTEALNLDDR------YIKAYSRRATARKELGKLKESIEDSEFALRLEPQN  184 (372)
Q Consensus       129 ~-~g~~~eA~~~~~~Al~l~p~------~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~  184 (372)
                      . +|++++|+..|++|+.+.+.      ...++.++|.++..+|+|++|+..|++++.+.+.+
T Consensus       129 ~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~  191 (290)
T d1qqea_         129 NDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN  191 (290)
T ss_dssp             HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccc
Confidence            3 45666666666666554321      13445555666666666666666666666555443

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.20  E-value=1.3e-11  Score=101.60  Aligned_cols=92  Identities=15%  Similarity=0.138  Sum_probs=80.5

Q ss_pred             CCCCCchhhHHHHHhhhhcCCCCch----------HHHHHHHHHHHHHhhcHHHHHHHHHHHHccCC-------C-----
Q 017383           59 NSYSRNYDPVSHISSSLMNEESTPD----------ATSEKELGNECFKQKKFKEAIDCYSRSIALSP-------T-----  116 (372)
Q Consensus        59 y~~g~~~~A~~~~~~al~~~p~~~~----------a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p-------~-----  116 (372)
                      |..|+|++|+..|+++|.+.|..++          +.++.++|.+|..+|+|++|+.+|++++.+.|       .     
T Consensus        20 ~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~   99 (156)
T d2hr2a1          20 LVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLW   99 (156)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchh
Confidence            3669999999999999998887653          56788999999999999999999999998643       2     


Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 017383          117 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY  150 (372)
Q Consensus       117 ~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~  150 (372)
                      ..+++++|.+|..+|++++|+.+|++|+++.|..
T Consensus       100 ~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1         100 ISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence            4578999999999999999999999999986643

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.18  E-value=4.2e-11  Score=108.53  Aligned_cols=94  Identities=12%  Similarity=0.043  Sum_probs=83.0

Q ss_pred             HHHHHHHHhhcHHHHHHHHHHHHccCC-----C--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------HHHHH
Q 017383           89 ELGNECFKQKKFKEAIDCYSRSIALSP-----T--AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY------IKAYS  155 (372)
Q Consensus        89 ~~g~~~~~~g~~~~Ai~~y~~al~~~p-----~--~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~------~~a~~  155 (372)
                      ..|++|...|+|++|+.+|.+++++..     .  +.+|.++|.||..+|++++|+.+|++++.+.+..      ..++.
T Consensus        42 ~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  121 (290)
T d1qqea_          42 QAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKF  121 (290)
T ss_dssp             HHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHH
Confidence            458999999999999999999999732     2  7889999999999999999999999999986554      67788


Q ss_pred             HHHHHHHH-cCCHHHHHHHHHHHHccCC
Q 017383          156 RRATARKE-LGKLKESIEDSEFALRLEP  182 (372)
Q Consensus       156 ~lg~~~~~-lg~~~~A~~~~~~al~l~P  182 (372)
                      ++|.++.. +|++++|+..|++++.+.+
T Consensus       122 ~l~~~~~~~~~~~~~A~~~~~~A~~l~~  149 (290)
T d1qqea_         122 ELGEILENDLHDYAKAIDCYELAGEWYA  149 (290)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhHhhHHHHHHHHHHHHHHHHHHHH
Confidence            99988865 7999999999999998754

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.10  E-value=1.3e-09  Score=91.73  Aligned_cols=100  Identities=14%  Similarity=0.071  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-----------------------HHHHHHHHHHHHHhcCHHHHHHHH
Q 017383           84 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-----------------------AVAYANRAMAYLKLRRFQEAEDDC  140 (372)
Q Consensus        84 a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-----------------------~~~~~~la~~~~~~g~~~eA~~~~  140 (372)
                      ...+...|..+...|++++|+.+|.+|+.+.+.                       ..++.++|.++..+|++++|+.+|
T Consensus        11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~   90 (179)
T d2ff4a2          11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAEL   90 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHH
Confidence            445778999999999999999999999998764                       157889999999999999999999


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-------HccCCC
Q 017383          141 TEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFA-------LRLEPQ  183 (372)
Q Consensus       141 ~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~a-------l~l~P~  183 (372)
                      ++++.++|.+..+|.+++.++..+|++.+|+..|+++       +-++|.
T Consensus        91 ~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~  140 (179)
T d2ff4a2          91 EALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG  140 (179)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred             HHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence            9999999999999999999999999999999999998       446665

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.97  E-value=3.9e-10  Score=101.01  Aligned_cols=127  Identities=8%  Similarity=-0.047  Sum_probs=109.6

Q ss_pred             CCCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 017383           59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE  137 (372)
Q Consensus        59 y~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~  137 (372)
                      +..|++++|+..|+++++.+|.+..+  +..+|.+|+..|+|++|+..|+++++++|+ ..++..++.++...+...++.
T Consensus         7 L~~G~l~eAl~~l~~al~~~P~d~~a--r~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~   84 (264)
T d1zbpa1           7 LSEGQLQQALELLIEAIKASPKDASL--RSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFA   84 (264)
T ss_dssp             TTTTCHHHHHHHHHHHHHTCTTCHHH--HHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHCCCHHHHHHHHHHHHHHCCCCHHH--HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHH
Confidence            46799999999999999999996666  569999999999999999999999999999 888888999888888887776


Q ss_pred             HHHHHHHh-cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHH
Q 017383          138 DDCTEALN-LDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI  187 (372)
Q Consensus       138 ~~~~~Al~-l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~  187 (372)
                      ..+.+... .+|.....++..+.++...|++++|...++++..+.|..+..
T Consensus        85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~  135 (264)
T d1zbpa1          85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL  135 (264)
T ss_dssp             TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred             HHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcc
Confidence            66555433 356777888889999999999999999999999999987654

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=1.1e-09  Score=106.77  Aligned_cols=109  Identities=13%  Similarity=-0.007  Sum_probs=84.9

Q ss_pred             CCCCCCC-CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHh
Q 017383           53 KPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKL  130 (372)
Q Consensus        53 ~~~~~~y-~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~  130 (372)
                      ...|..| ..|+++.|+..+.+++..++.    .++..+|.++...|+|++|+.+|.+|+.++|+ ..+|+++|.++...
T Consensus       124 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~  199 (497)
T d1ya0a1         124 SQLGIISNKQTHTSAIVKPQSSSCSYICQ----HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSK  199 (497)
T ss_dssp             -------------------CCHHHHHHHH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHT
T ss_pred             HHhHHHHHhCCCHHHHHHHHHHHhCCCHH----HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHc
Confidence            4455555 778999999999999988753    45779999999999999999999999999999 99999999999999


Q ss_pred             cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 017383          131 RRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG  165 (372)
Q Consensus       131 g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg  165 (372)
                      |++.+|+.+|.+|+.++|.++.++.+++.++....
T Consensus       200 ~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~  234 (497)
T d1ya0a1         200 GDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKAL  234 (497)
T ss_dssp             TCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999887654

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.95  E-value=2.4e-09  Score=96.47  Aligned_cols=126  Identities=9%  Similarity=-0.019  Sum_probs=109.0

Q ss_pred             CCCCCchhhHHHHHhhhhcCCCCch---HHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-------HHHHHHHHHHHH
Q 017383           59 NSYSRNYDPVSHISSSLMNEESTPD---ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------AVAYANRAMAYL  128 (372)
Q Consensus        59 y~~g~~~~A~~~~~~al~~~p~~~~---a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-------~~~~~~la~~~~  128 (372)
                      +..|++++|+.+|++++...|.+..   +.++..+|.+|+..|++++|+..|.+++.+.+.       ..++.++|.++.
T Consensus        23 ~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  102 (366)
T d1hz4a_          23 INDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILF  102 (366)
T ss_dssp             HHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence            3679999999999999999987643   346778999999999999999999999987532       677899999999


Q ss_pred             HhcCHHHHHHHHHHHHhcCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCc
Q 017383          129 KLRRFQEAEDDCTEALNLDD--------RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN  184 (372)
Q Consensus       129 ~~g~~~eA~~~~~~Al~l~p--------~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~  184 (372)
                      ..|++..|+..+.+++.+.+        ....++..+|.++...|+++.|...+.+++...+..
T Consensus       103 ~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~  166 (366)
T d1hz4a_         103 AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY  166 (366)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS
T ss_pred             HHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhh
Confidence            99999999999999987642        224567889999999999999999999999887654

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.86  E-value=2.5e-08  Score=90.43  Aligned_cols=124  Identities=11%  Similarity=-0.087  Sum_probs=81.4

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHH-HhcCHHHHH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYL-KLRRFQEAE  137 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~-~~g~~~eA~  137 (372)
                      ..|+++.|...|.+++...|.+. ...+...+..+...|+++.|...|.+++...|. ...|...|.... ..|+.+.|.
T Consensus       111 ~~~~~~~a~~i~~~~l~~~~~~~-~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~  189 (308)
T d2onda1         111 SRMKYEKVHSIYNRLLAIEDIDP-TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAF  189 (308)
T ss_dssp             HTTCHHHHHHHHHHHHTSSSSCT-HHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred             hcccHHHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHH
Confidence            44666777777777777666532 223446666666777777777777777777666 555656565433 346677777


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCc
Q 017383          138 DDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN  184 (372)
Q Consensus       138 ~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~  184 (372)
                      ..|++++..+|+++..|...+..+...|+++.|...|++++...|.+
T Consensus       190 ~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~  236 (308)
T d2onda1         190 KIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP  236 (308)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence            77777777777777777777777777777777777777777766543

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.86  E-value=2.8e-08  Score=90.13  Aligned_cols=142  Identities=9%  Similarity=0.021  Sum_probs=120.4

Q ss_pred             CCchhhHHHHHhhhhc-CCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC--HHHHHHHHHHHHHhcCHHHHHH
Q 017383           62 SRNYDPVSHISSSLMN-EESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT--AVAYANRAMAYLKLRRFQEAED  138 (372)
Q Consensus        62 g~~~~A~~~~~~al~~-~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~--~~~~~~la~~~~~~g~~~eA~~  138 (372)
                      +.+++|...|++++.. .|.  ....+...+..+...|+++.|...|++++...|.  ..+|..++......|+++.|..
T Consensus        78 ~~~~~a~~i~~ral~~~~p~--~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~  155 (308)
T d2onda1          78 LFSDEAANIYERAISTLLKK--NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRM  155 (308)
T ss_dssp             HHHHHHHHHHHHHHTTTTTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHH
Confidence            4567889999999975 555  3344678899999999999999999999999987  5678999999999999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHccCCCcHHHH----------HHHHHHHHHHHHHHHhh
Q 017383          139 DCTEALNLDDRYIKAYSRRATARK-ELGKLKESIEDSEFALRLEPQNQEIK----------KQLAEVKSLYEKEVFQK  205 (372)
Q Consensus       139 ~~~~Al~l~p~~~~a~~~lg~~~~-~lg~~~~A~~~~~~al~l~P~~~~~~----------~~l~~a~~~~~~~~~~~  205 (372)
                      .|.+++...|.....|...|.... ..|+.+.|...|++++...|++...+          +.+..|+..|++++...
T Consensus       156 i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~  233 (308)
T d2onda1         156 IFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG  233 (308)
T ss_dssp             HHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Confidence            999999999999999999987654 46899999999999999999998875          34556666777766543

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.72  E-value=3e-08  Score=89.07  Aligned_cols=122  Identities=12%  Similarity=-0.085  Sum_probs=98.6

Q ss_pred             CCCchhhHHHHHhhhhcCCCCc-----hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-----HHHHHHHHHHHHHh
Q 017383           61 YSRNYDPVSHISSSLMNEESTP-----DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-----AVAYANRAMAYLKL  130 (372)
Q Consensus        61 ~g~~~~A~~~~~~al~~~p~~~-----~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-----~~~~~~la~~~~~~  130 (372)
                      .+++..+...+.++........     ....+..+|..+...|++++|..++.+++...+.     ...+.++|.++..+
T Consensus       185 ~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~  264 (366)
T d1hz4a_         185 RGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILL  264 (366)
T ss_dssp             HTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHT
T ss_pred             hhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc
Confidence            4555556666655554332211     2334667889999999999999999999998765     56788999999999


Q ss_pred             cCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 017383          131 RRFQEAEDDCTEALNL------DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEP  182 (372)
Q Consensus       131 g~~~eA~~~~~~Al~l------~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P  182 (372)
                      |++++|+..+++++..      .|....++..+|.+|..+|++++|+..|++++.+.+
T Consensus       265 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~  322 (366)
T d1hz4a_         265 GEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN  322 (366)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence            9999999999999854      466688999999999999999999999999998865

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.66  E-value=1.4e-07  Score=73.14  Aligned_cols=81  Identities=12%  Similarity=0.020  Sum_probs=66.6

Q ss_pred             CCHHHHHHHHHHHHHhc---CHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHH
Q 017383          115 PTAVAYANRAMAYLKLR---RFQEAEDDCTEALNLDDRY-IKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQ  190 (372)
Q Consensus       115 p~~~~~~~la~~~~~~g---~~~eA~~~~~~Al~l~p~~-~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~  190 (372)
                      +...+.++.|.|+.+..   +..+|+..++.++..+|.+ .++++++|.+|..+|+|++|..+++++|+++|+|..+...
T Consensus        33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L  112 (124)
T d2pqrb1          33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL  112 (124)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHH
Confidence            34778888888888654   5668999999999988876 4899999999999999999999999999999999888655


Q ss_pred             HHHHH
Q 017383          191 LAEVK  195 (372)
Q Consensus       191 l~~a~  195 (372)
                      ...+.
T Consensus       113 ~~~Ie  117 (124)
T d2pqrb1         113 KSMVE  117 (124)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44443

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.60  E-value=2.5e-08  Score=88.93  Aligned_cols=91  Identities=15%  Similarity=0.149  Sum_probs=80.8

Q ss_pred             HHHHHHhhcHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 017383           91 GNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKE  169 (372)
Q Consensus        91 g~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~  169 (372)
                      +...+..|++++|+..|+++++.+|+ ..++.++|.+|+..|++++|+..|+++++++|++..++..++.++...+..++
T Consensus         3 ~~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~   82 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD   82 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHH
Confidence            34567899999999999999999999 99999999999999999999999999999999999999999999988888877


Q ss_pred             HHHHHHHHHccC
Q 017383          170 SIEDSEFALRLE  181 (372)
Q Consensus       170 A~~~~~~al~l~  181 (372)
                      +...+.+...+.
T Consensus        83 a~~~~~~~~~~~   94 (264)
T d1zbpa1          83 FAQGAATAKVLG   94 (264)
T ss_dssp             HTTSCCCEECCC
T ss_pred             HHHHhhhhhccc
Confidence            766655544443

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.56  E-value=1.9e-07  Score=78.09  Aligned_cols=85  Identities=12%  Similarity=0.037  Sum_probs=75.7

Q ss_pred             CCCCchhhHHHHHhhhhcCCCCc--------------------hHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCC-HH
Q 017383           60 SYSRNYDPVSHISSSLMNEESTP--------------------DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AV  118 (372)
Q Consensus        60 ~~g~~~~A~~~~~~al~~~p~~~--------------------~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~-~~  118 (372)
                      ..|++++|+..|.+++.+.+...                    ...++..+|.++...|+|++|+.++++++.++|. ..
T Consensus        23 ~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~  102 (179)
T d2ff4a2          23 AAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREP  102 (179)
T ss_dssp             HTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred             HCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHH
Confidence            56899999999999999876542                    1125678999999999999999999999999998 99


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHH
Q 017383          119 AYANRAMAYLKLRRFQEAEDDCTEAL  144 (372)
Q Consensus       119 ~~~~la~~~~~~g~~~eA~~~~~~Al  144 (372)
                      +|.+++.+|..+|++.+|+..|+++.
T Consensus       103 ~~~~l~~al~~~Gr~~eAl~~y~~~~  128 (179)
T d2ff4a2         103 LWTQLITAYYLSDRQSDALGAYRRVK  128 (179)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            99999999999999999999999983

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.40  E-value=1.1e-06  Score=67.97  Aligned_cols=81  Identities=6%  Similarity=0.010  Sum_probs=69.4

Q ss_pred             chHHHHHHHHHHHHHh---hcHHHHHHHHHHHHccCCC--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHH
Q 017383           82 PDATSEKELGNECFKQ---KKFKEAIDCYSRSIALSPT--AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSR  156 (372)
Q Consensus        82 ~~a~~~~~~g~~~~~~---g~~~~Ai~~y~~al~~~p~--~~~~~~la~~~~~~g~~~eA~~~~~~Al~l~p~~~~a~~~  156 (372)
                      +.....++.|.++.+.   .+..+||.+++.++..+|.  .++++++|++|+++|+|++|..+++++|+++|++..+...
T Consensus        33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L  112 (124)
T d2pqrb1          33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL  112 (124)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHH
Confidence            3455567888888754   6678999999999999986  6899999999999999999999999999999999998776


Q ss_pred             HHHHHH
Q 017383          157 RATARK  162 (372)
Q Consensus       157 lg~~~~  162 (372)
                      .-.+..
T Consensus       113 ~~~Ie~  118 (124)
T d2pqrb1         113 KSMVED  118 (124)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            665543

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.30  E-value=3.5e-06  Score=66.24  Aligned_cols=113  Identities=12%  Similarity=0.005  Sum_probs=92.5

Q ss_pred             CCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCCHHHHHHHHHHHHH----hcCHHHHH
Q 017383           62 SRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLK----LRRFQEAE  137 (372)
Q Consensus        62 g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~~la~~~~~----~g~~~eA~  137 (372)
                      .|+++|+.+|.++.+..  +..+  .+.+|.  ....++++|+.+|+++.+.. ++.+++++|..|..    ..++.+|+
T Consensus         7 kd~~~A~~~~~kaa~~g--~~~a--~~~l~~--~~~~~~~~a~~~~~~aa~~g-~~~a~~~Lg~~y~~g~~~~~d~~~A~   79 (133)
T d1klxa_           7 KDLKKAIQYYVKACELN--EMFG--CLSLVS--NSQINKQKLFQYLSKACELN-SGNGCRFLGDFYENGKYVKKDLRKAA   79 (133)
T ss_dssp             HHHHHHHHHHHHHHHTT--CTTH--HHHHHT--CTTSCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             cCHHHHHHHHHHHHHCC--Chhh--hhhhcc--ccccCHHHHHHHHhhhhccc-chhhhhhHHHhhhhccccchhhHHHH
Confidence            37889999999999876  2244  446664  45678999999999998752 37889999999986    56799999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHccCCC
Q 017383          138 DDCTEALNLDDRYIKAYSRRATARKE----LGKLKESIEDSEFALRLEPQ  183 (372)
Q Consensus       138 ~~~~~Al~l~p~~~~a~~~lg~~~~~----lg~~~~A~~~~~~al~l~P~  183 (372)
                      .+|+++.+.  .++.+.+++|.+|..    ..++.+|+.+|+++.++...
T Consensus        80 ~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~~  127 (133)
T d1klxa_          80 QYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE  127 (133)
T ss_dssp             HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred             HHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCCH
Confidence            999999875  578899999999887    56899999999999887653

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.04  E-value=3.6e-05  Score=66.86  Aligned_cols=97  Identities=15%  Similarity=0.205  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHHHccCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 017383           85 TSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLK----LRRFQEAEDDCTEALNLDDRYIKAYSRRATA  160 (372)
Q Consensus        85 ~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~~la~~~~~----~g~~~eA~~~~~~Al~l~p~~~~a~~~lg~~  160 (372)
                      .+++++|..++..|+|.+|+.+|+++.+.. +..+++++|.+|..    ..++..|..+++.+...  .++.+...+|.+
T Consensus         3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g-~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~--~~~~a~~~l~~~   79 (265)
T d1ouva_           3 KELVGLGAKSYKEKDFTQAKKYFEKACDLK-ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNGCHLLGNL   79 (265)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc--cccchhhccccc
Confidence            347799999999999999999999998753 37889999999987    67899999999998864  477888899988


Q ss_pred             HHH----cCCHHHHHHHHHHHHccCCCc
Q 017383          161 RKE----LGKLKESIEDSEFALRLEPQN  184 (372)
Q Consensus       161 ~~~----lg~~~~A~~~~~~al~l~P~~  184 (372)
                      +..    .++.+.|...|+.+....+..
T Consensus        80 ~~~~~~~~~~~~~a~~~~~~a~~~g~~~  107 (265)
T d1ouva_          80 YYSGQGVSQNTNKALQYYSKACDLKYAE  107 (265)
T ss_dssp             HHHTSSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred             cccccccchhhHHHHHHHhhhhhhhhhh
Confidence            775    468899999999998876643

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.79  E-value=0.00014  Score=63.00  Aligned_cols=113  Identities=12%  Similarity=0.124  Sum_probs=52.1

Q ss_pred             CCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHH----hhcHHHHHHHHHHHHccCCCHHHHHHHHHHHHH----hcC
Q 017383           61 YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFK----QKKFKEAIDCYSRSIALSPTAVAYANRAMAYLK----LRR  132 (372)
Q Consensus        61 ~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~----~g~~~~Ai~~y~~al~~~p~~~~~~~la~~~~~----~g~  132 (372)
                      ..+.+.|+..++.+....+.  .+  ...+|..+..    ......|+..+.+..... ....++++|.+|..    ..+
T Consensus        87 ~~~~~~a~~~~~~a~~~g~~--~a--~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~L~~~~~~~~~~~~~  161 (265)
T d1ouva_          87 SQNTNKALQYYSKACDLKYA--EG--CASLGGIYHDGKVVTRDFKKAVEYFTKACDLN-DGDGCTILGSLYDAGRGTPKD  161 (265)
T ss_dssp             CCCHHHHHHHHHHHHHTTCH--HH--HHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCC
T ss_pred             chhhHHHHHHHhhhhhhhhh--hH--HHhhcccccCCCcccchhHHHHHHhhhhhccc-ccchhhhhhhhhccCCCcccc
Confidence            34566667777766665432  22  2234444432    334444444444443311 13444445554443    223


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHcc
Q 017383          133 FQEAEDDCTEALNLDDRYIKAYSRRATARKE----LGKLKESIEDSEFALRL  180 (372)
Q Consensus       133 ~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~----lg~~~~A~~~~~~al~l  180 (372)
                      ...+..+++.+.+  ..++.+++++|.++..    ..++++|+.+|+++.+.
T Consensus       162 ~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~  211 (265)
T d1ouva_         162 LKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL  211 (265)
T ss_dssp             HHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT
T ss_pred             cccchhhhhcccc--ccccccccchhhhcccCcccccchhhhhhhHhhhhcc
Confidence            4444444444443  2344455555554444    34455555555555444

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.30  E-value=0.00088  Score=51.80  Aligned_cols=84  Identities=13%  Similarity=0.110  Sum_probs=69.6

Q ss_pred             CCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHH----hhcHHHHHHHHHHHHccCCCHHHHHHHHHHHHH----hcC
Q 017383           61 YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFK----QKKFKEAIDCYSRSIALSPTAVAYANRAMAYLK----LRR  132 (372)
Q Consensus        61 ~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~----~g~~~~Ai~~y~~al~~~p~~~~~~~la~~~~~----~g~  132 (372)
                      ..++++|+.+|+++.+..    .+.+.+.+|..|+.    ..++.+|+.+|+++.+.. ++.+.+++|.+|..    ..+
T Consensus        36 ~~~~~~a~~~~~~aa~~g----~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g-~~~a~~~Lg~~y~~G~gv~~d  110 (133)
T d1klxa_          36 QINKQKLFQYLSKACELN----SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN-DQDGCLILGYKQYAGKGVVKN  110 (133)
T ss_dssp             TSCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCC
T ss_pred             ccCHHHHHHHHhhhhccc----chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC-cchHHHHHHHHHHcCCccCCC
Confidence            467899999999998876    34446799999876    568999999999998753 37888999999987    568


Q ss_pred             HHHHHHHHHHHHhcCCC
Q 017383          133 FQEAEDDCTEALNLDDR  149 (372)
Q Consensus       133 ~~eA~~~~~~Al~l~p~  149 (372)
                      +.+|+.+|++|.++...
T Consensus       111 ~~~A~~~~~~Aa~~G~~  127 (133)
T d1klxa_         111 EKQAVKTFEKACRLGSE  127 (133)
T ss_dssp             HHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHCCCH
Confidence            99999999999987643

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.01  E-value=0.47  Score=32.35  Aligned_cols=29  Identities=21%  Similarity=0.375  Sum_probs=23.1

Q ss_pred             hHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q 017383           83 DATSEKELGNECFKQKKFKEAIDCYSRSI  111 (372)
Q Consensus        83 ~a~~~~~~g~~~~~~g~~~~Ai~~y~~al  111 (372)
                      .|+.+-..+..+.+.|+|++||+|+++|.
T Consensus         7 ~AH~~~RrAer~l~~~rydeAIech~kA~   35 (83)
T d2crba1           7 LAHQQSRRADRLLAAGKYEEAISCHRKAT   35 (83)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            45666778888999999999999977654

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=80.72  E-value=12  Score=32.16  Aligned_cols=126  Identities=14%  Similarity=0.101  Sum_probs=81.4

Q ss_pred             CCCCC-CCCCCchhhHHHHHhhhhcCCCCchHHHHHHHHHHHHHhhcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHhcC
Q 017383           54 PSPSG-NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRR  132 (372)
Q Consensus        54 ~~~~~-y~~g~~~~A~~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~~la~~~~~~g~  132 (372)
                      .+|.. +..|.|+.|..+|...=    +      +..+..++...++|..|.+...++    -...+|.....++.....
T Consensus        19 ~i~~~c~~~~lye~A~~lY~~~~----d------~~rl~~~~v~l~~~~~avd~~~k~----~~~~~~k~~~~~l~~~~e   84 (336)
T d1b89a_          19 QVGDRCYDEKMYDAAKLLYNNVS----N------FGRLASTLVHLGEYQAAVDGARKA----NSTRTWKEVCFACVDGKE   84 (336)
T ss_dssp             ----------CTTTHHHHHHHTT----C------HHHHHHHHHTTTCHHHHHHHHHHH----TCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHCCCHHHHHHHHHhCC----C------HHHHHHHHHhhccHHHHHHHHHHc----CCHHHHHHHHHHHHhCcH
Confidence            34444 48899999999987431    1      335567788999999999988765    226677777777777777


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCcHHHHHHHHHHHHH
Q 017383          133 FQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSL  197 (372)
Q Consensus       133 ~~eA~~~~~~Al~l~p~~~~a~~~lg~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~a~~~  197 (372)
                      ..-|.. +...+.+   ++.-....-..+...|.+++.+..++.++.+.+.+......+..+...
T Consensus        85 ~~la~i-~~~~~~~---~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak  145 (336)
T d1b89a_          85 FRLAQM-CGLHIVV---HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK  145 (336)
T ss_dssp             HHHHHH-TTTTTTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHT
T ss_pred             HHHHHH-HHHHhhc---CHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHH
Confidence            665422 2222222   334444566777889999999999999998888888777666655443