Citrus Sinensis ID: 017390

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370--
Protein Sequence
MEVPEFFQGSYCAQFSAEKHHSLDSNKSSNGGDHFIVEELLDFSNEDAILTDAAAFDDVTANSTDSSTVTVVDSCNSSSFSGCGPNFPGENNGCRNFSDAHFSGDLCVPYDDLAELEWLSNIVEESFSCEDLQKLQLISGMKARSDHSSETRQFQPGTNRIYHGSTNTSNNTNANPNNPVFNPEMAVPAKARSKRSRAAPCSWASRLLVLSPPESTSEPEIIPTGPPPPPLQGKKSVKACGSKKKDSGDEGNGEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTKHSNSHRKVLELRRQKELQRAQQQQHQQQQFMHHHHHHQNMMFDLSNGDDYLIHQHVGPDFRQLI
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEccccccEEEEEccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHcccccccccccccccccccccccccccccEHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccHHHcccEEEccccccccccccccccccccHccccHHHHHHHHHHHHHcccccccccccccccccccccccEEEccccccEEEEcccccccHHcc
Coil and Loop (DISEMBL)
mevpeffqgsycaqfsaekhhsldsnkssnggdhFIVEELLdfsnedailtdaaafddvtanstdsstVTVVdscnsssfsgcgpnfpgenngcrnfsdahfsgdlcvpyddlaeLEWLSNIveesfscedLQKLQLISGmkarsdhssetrqfqpgtnriyhgstntsnntnanpnnpvfnpemavpakarskrsraapcswasrllvlsppestsepeiiptgppppplqgkksvkacgskkkdsgdegngegrkclhcatdktpqwrtgpmgpktlcnacgvryksgrlvpeyrpassptfvltkhsnshRKVLELRRQKELQRAQQQQHQQQQFMHhhhhhqnmmfdlsngddylihqhvgpdfrqli
Flexible Loop (DISEMBL)
MEVPEFFQGSYCAQFSAEKHHSLDSNKSSNGGDHFIVEELLDFSNEDAILTDAAAFDDVTANSTDSSTVTVVDSCNSSSFSGCGPNFPGENNGCRNFSDAHFSGDLCVPYDDLAELEWLSNIVEESFSCEDLQKLQLISGMkarsdhssetrqfqpgtnriYHGSTNTSNNTNANPNNPVFNPEMAVPAKARSKRSRAAPCSWASRLLVLSPPESTSEPEIiptgppppplqgkkSVKACGSKkkdsgdegngegrkclhcatdktpqwrtgpmgpKTLCNACGVRYKSgrlvpeyrpassptfvltkhsnshRKVLELRRQKELQRAQQQQHQQQQFMHHHHHHQNMMFDLSNGDDYLIHQHVGPDFRQLI
Low Complexity Region (SEG)
MEVPEFFQGSYCAQFSAEKHHSLDSNKSSNGGDHFIVEELLDFSNEDAILTDAAAFddvtanstdsstvtvvdscnsssFSGCGPNFPGENNGCRNFSDAHFSGDLCVPYDDLAELEWLSNIVEESFSCEDLQKLQLISGMKARSDHSSETRQFQPGTNRIYHGStntsnntnanpnnpvfnpEMAVPakarskrsraaPCSWASRLLVLsppestsepeiiptgpppppLQgkksvkacgskkkDSGDEGNGEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTKHSNSHRKVLELRRQKELQRAqqqqhqqqqfmhhhhhhqNMMFDLSNGDDYLIHQHVGPDFRQLI
Disordered region (IsUnstruct)
**********YC*********************HFIVEELLDFSNEDAILTDAAAFDDVTA*******VTVVD*C*******C***F*GENNGCRNFSDAHFSGDLCVPYDDLAELEWLSNIVEESFSCEDLQKLQLI***********************************************************************************************************************CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEY****************************************************************************
Disordered Region (DISOPRED)
****EFF**SYCAQFSAEKHH*LDSNKSSNGGDHFIVEELLDFSNEDAILTDAAA*********************************************HFSGDLCVPYDDLAELEWLSNIVEESFSC**********************************************************************************************************************************HCATDKTPQWRTGPMGPKTLCNACGVRY**************************************************************FDLSNGDDYLIHQHVGPDFRQLI
Disordered Region (DISEMBL)
MEVPEFFQGSYCAQFSA**********SSNGGDHFIVEELLDFSNEDAILTDAAAFDDVTANSTDSSTVTVVDSCNSSSFSGCGPNFPGENNGCRNFSDAHFSGDLCVPYDDLAELEWLSNIVEESFSCEDLQKLQLIS**************FQPGTNRIYHGSTNTSNNTNANPNNPVFNPEMAV**************SWASRLLVLS***********PTGPPPPP************************GRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTKHSNSHRKVLELRR**********************HHQNMMFDLSNGDDYLIHQHVGPDFRQLI
Disordered Region (DISPRO)
*****FFQGSYCAQFSAEKHH**********GDHFIVEELLDFSNE*****************************************************AHFSGDLCVPYDDLAELEWLSNIVEESFSCEDLQKLQL**********************************************************************************************************************RKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTKHS*****VLELRRQK********************HHQNMMFDLSNGDDYLIHQHVGPDFR***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEVPEFFQGSYCAQFSAEKHHSLDSNKSSNGGDHFIVEELLDFSNEDAILTDAAAFDDVTANSTDSSTVTVVDSCNSSSFSGCGPNFPGENNGCRNFSDAHFSGDLCVPYDDLAELEWLSNIVEESFSCEDLQKLQLISGMKARSDHSSETRQFQPGTNRIYHGSTNTSNNTNANPNNPVFNPEMAVPAKARSKRSRAAPCSWASRLLVLSPPESTSEPEIIPTGPPPPPLQGKKSVKACGSKKKDSGDEGNGEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTKHSNSHRKxxxxxxxxxxxxxxxxxxxxxQFMHHHHHHQNMMFDLSNGDDYLIHQHVGPDFRQLI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	372	2.2.26 [Sep-21-2011]
P69781	331	GATA transcription factor	yes	no	0.809	0.909	0.523	6e-79
O82632	308	GATA transcription factor	no	no	0.766	0.925	0.468	2e-71
O49741	264	GATA transcription factor	no	no	0.502	0.708	0.459	1e-41
O49743	240	GATA transcription factor	no	no	0.440	0.683	0.463	2e-41
Q9FH57	339	GATA transcription factor	no	no	0.559	0.613	0.395	6e-32
O65515	238	GATA transcription factor	no	no	0.446	0.697	0.389	9e-29
Q6DBP8	303	GATA transcription factor	no	no	0.201	0.247	0.72	5e-28
Q8LAU9	274	GATA transcription factor	no	no	0.182	0.248	0.779	8e-28
Q8L4M6	269	GATA transcription factor	no	no	0.188	0.260	0.771	1e-26
Q9SV30	322	GATA transcription factor	no	no	0.182	0.211	0.75	1e-26

>sp|P69781|GAT12_ARATH GATA transcription factor 12 OS=Arabidopsis thaliana GN=GATA12 PE=2 SV=1

 Score =  294 bits (753), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 186/355 (52%), Positives = 221/355 (62%), Gaps = 54/355 (15%)

Query: 35  FIVEELL-DFSNEDAILTDAAAFDDVTANSTDSSTVTVVDSCNSSSFSGCGPNFPGENNG 93
           F V++LL DFSN+D    D  A    T   TDSS  +  D           P+F G+   
Sbjct: 14  FAVDDLLVDFSNDDDEENDVVADSTTTTTITDSSNFSAADL----------PSFHGDVQD 63

Query: 94  CRNFSDAHFSGDLCVPYDDLA-ELEWLSNIVEESFSCEDLQKLQLISGMKARSDHSSETR 152
             +FS     GDLC+P DDLA ELEWLSNIV+ES S ED+ KL+LISG K+R D  S+T 
Sbjct: 64  GTSFS-----GDLCIPSDDLADELEWLSNIVDESLSPEDVHKLELISGFKSRPDPKSDT- 117

Query: 153 QFQPGTNRIYHGSTNTSNNTNANPNNPVFNPEMAVPAKARSKRSRAAPCSWASR-LLVLS 211
                      GS       N N ++P+F  +++VPAKARSKRSRAA C+WASR LL  +
Sbjct: 118 -----------GSPE-----NPNSSSPIFTTDVSVPAKARSKRSRAAACNWASRGLLKET 161

Query: 212 PPESTSEPEII---------PTGPP--PPPLQGKKSVKACGSKKKD--SGDEGNGEGRKC 258
             +S    E I         PT PP    PL  K++V     +KKD  S + G  E R+C
Sbjct: 162 FYDSPFTGETILSSQQHLSPPTSPPLLMAPLGKKQAVDGGHRRKKDVSSPESGGAEERRC 221

Query: 259 LHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTKHSNSHRKVLE 318
           LHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPA+SPTFVL KHSNSHRKV+E
Sbjct: 222 LHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLAKHSNSHRKVME 281

Query: 319 LRRQKELQRAQQQQHQQQQFMHHHHHHQNMMFDL-SNGDDYLIHQHVGPDFRQLI 372
           LRRQKE+ RA  +                M+FD+ S+GDDYLIH +VGPDFRQLI
Sbjct: 282 LRRQKEMSRAHHEFIHHHHGT-----DTAMIFDVSSDGDDYLIHHNVGPDFRQLI 331

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.
Arabidopsis thaliana (taxid: 3702)

>sp|O82632|GATA9_ARATH GATA transcription factor 9 OS=Arabidopsis thaliana GN=GATA9 PE=2 SV=1

 Score =  270 bits (689), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 163/348 (46%), Positives = 208/348 (59%), Gaps = 63/348 (18%)

Query: 33  DHFIVEELLDFSNEDAILTDAAAFDDVTANSTDSSTVTVVDSCNSSSFSGCGPNFPGENN 92
           D F+V++LLDFSN+D  + D     +   +S+  ST T+ DS NSSS             
Sbjct: 16  DSFVVDDLLDFSNDDGEVDDGL---NTLPDSSTLSTGTLTDSSNSSSL------------ 60

Query: 93  GCRNFSDAHFSGDLCVPYDDLAELEWLSNIVEESFSCEDLQKLQLISGMK-ARSDHSSET 151
               F+D     DL +P DD+AELEWLSN VEESF+ ED  KL L SG+K  ++  S+ T
Sbjct: 61  ----FTDGTGFSDLYIPNDDIAELEWLSNFVEESFAGEDQDKLHLFSGLKNPQTTGSTLT 116

Query: 152 RQFQPGTNRIYHGSTNTSNNTNANPNNPVFNPEMAVPAKARSKRSRAAPCSWASRLLVLS 211
              +P     +       +N             +AVPAKARSKRSR+A  +WASRLL L+
Sbjct: 117 HLIKPEPELDHQFIDIDESN-------------VAVPAKARSKRSRSAASTWASRLLSLA 163

Query: 212 PPESTSEPEIIPTGPPPPPLQGKKSVKA---CGSKKKDSGDEGNGEGRKCLHCATDKTPQ 268
             + T+            P + ++ VK     G    D G+ G G  R+CLHCAT+KTPQ
Sbjct: 164 DSDETN------------PKKKQRRVKEQDFAGDMDVDCGESGGG--RRCLHCATEKTPQ 209

Query: 269 WRTGPMGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTKHSNSHRKVLELRRQKELQRA 328
           WRTGPMGPKTLCNACGVRYKSGRLVPEYRPASSPTFV+ +HSNSHRKV+ELRRQKE+   
Sbjct: 210 WRTGPMGPKTLCNACGVRYKSGRLVPEYRPASSPTFVMARHSNSHRKVMELRRQKEM--- 266

Query: 329 QQQQHQQQQFMHHHHHHQNMMFDL-SNGDDYLIH---QHVGPDFRQLI 372
            + +H   Q        +N++ D+ SNG+D+L+H    HV PDFR LI
Sbjct: 267 -RDEHLLSQL-----RCENLLMDIRSNGEDFLMHNNTNHVAPDFRHLI 308

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|O49741|GATA2_ARATH GATA transcription factor 2 OS=Arabidopsis thaliana GN=GATA2 PE=2 SV=1

 Score =  170 bits (431), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 107/233 (45%), Positives = 127/233 (54%), Gaps = 46/233 (19%)

Query: 102 FSGDLCVPYDDLAELEWLSNIVEESFSCEDLQKLQLISGMKARSDHSSETRQFQPGTNRI 161
           F  D+CVP DD A LEWLS  V++SF+      L                          
Sbjct: 65  FLHDICVPSDDAAHLEWLSQFVDDSFADFPANPL-------------------------- 98

Query: 162 YHGSTNTSNNTNANPNNPVFNPEMAVPAKARSKRSRAAPCSWASRLLVLSPPESTSEPEI 221
             G T TS  T           E + P K RSKRSRA P  +A      SP    SE + 
Sbjct: 99  --GGTMTSVKT-----------ETSFPGKPRSKRSRA-PAPFAG---TWSPMPLESEHQQ 141

Query: 222 IPTGPPPPPLQGKKSVKACGSKKKDSGDEGNGEG---RKCLHCATDKTPQWRTGPMGPKT 278
           + +     P + +      G  +  S      EG   R+C HCA++KTPQWRTGP+GPKT
Sbjct: 142 LHSAAKFKPKKEQSGGGGGGGGRHQSSSSETTEGGGMRRCTHCASEKTPQWRTGPLGPKT 201

Query: 279 LCNACGVRYKSGRLVPEYRPASSPTFVLTKHSNSHRKVLELRRQKELQRAQQQ 331
           LCNACGVR+KSGRLVPEYRPASSPTFVLT+HSNSHRKV+ELRRQKE+ R  QQ
Sbjct: 202 LCNACGVRFKSGRLVPEYRPASSPTFVLTQHSNSHRKVMELRRQKEVMRQPQQ 254

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|O49743|GATA4_ARATH GATA transcription factor 4 OS=Arabidopsis thaliana GN=GATA4 PE=2 SV=1

 Score =  170 bits (430), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 107/231 (46%), Positives = 124/231 (53%), Gaps = 67/231 (29%)

Query: 102 FSGDLCVPYDDLAELEWLSNIVEESFSCEDLQKLQLISGMKARSDHSSETRQFQPGTNRI 161
           F+ DLCVP DD A LEWLS  V++SFS                                 
Sbjct: 63  FTHDLCVPSDDAAHLEWLSRFVDDSFS--------------------------------- 89

Query: 162 YHGSTNTSNNTNANPNNPVFNPEMAVPAKARSKRSRA-APC---SWASRLLVLSPPESTS 217
                    +  ANP      PE++   K RS+RSRA AP    +WA        P S S
Sbjct: 90  ---------DFPANPLTMTVRPEISFTGKPRSRRSRAPAPSVAGTWA--------PMSES 132

Query: 218 EPEIIPTGPPPPPLQGKKSVKACGSKKKDSGDEGNGEGRKCLHCATDKTPQWRTGPMGPK 277
           E       P P  +   +SV A G              R+C HCA++KTPQWRTGP+GPK
Sbjct: 133 ELCHSVAKPKPKKVYNAESVTADG-------------ARRCTHCASEKTPQWRTGPLGPK 179

Query: 278 TLCNACGVRYKSGRLVPEYRPASSPTFVLTKHSNSHRKVLELRRQKELQRA 328
           TLCNACGVRYKSGRLVPEYRPASSPTFVLT+HSNSHRKV+ELRRQKE Q +
Sbjct: 180 TLCNACGVRYKSGRLVPEYRPASSPTFVLTQHSNSHRKVMELRRQKEQQES 230

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FH57|GATA5_ARATH GATA transcription factor 5 OS=Arabidopsis thaliana GN=GATA5 PE=2 SV=1

 Score =  138 bits (348), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 100/253 (39%), Positives = 126/253 (49%), Gaps = 45/253 (17%)

Query: 92  NGCRNFSDAHFSGDLCVPYDDLAELEWLSNIVEESFSCEDLQKLQLISGMKARSDHSSET 151
           +GC +F     S +L +P DDLA LEWLS+ VE+SF+      L         +   +E 
Sbjct: 90  SGCDDFGSLPTS-ELSLPADDLANLEWLSHFVEDSFTEYSGPNL---------TGTPTEK 139

Query: 152 RQFQPGTNRIYHGSTNTSNNTNANPNNPVFNPEMAVPAKARSKRSRAAPCSWASRLLVLS 211
             +  G +R +  +  T      +P          VPAKARSKR+R     W+      S
Sbjct: 140 PAWLTG-DRKHPVTAVTEETCFKSP----------VPAKARSKRNRNGLKVWSLGSSSSS 188

Query: 212 PPESTS--------------------EPEIIPTGPPPPPLQGKKSVKACGSKKKDSGDEG 251
            P S+                     EP +    PP P    K+S ++  S +       
Sbjct: 189 GPSSSGSTSSSSSGPSSPWFSGAELLEPVVTSERPPFPKKHKKRSAESVFSGELQQLQPQ 248

Query: 252 NGEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTKHSN 311
               RKC HC   KTPQWR GPMG KTLCNACGVRYKSGRL+PEYRPA SPTF    HSN
Sbjct: 249 ----RKCSHCGVQKTPQWRAGPMGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSN 304

Query: 312 SHRKVLELRRQKE 324
            HRKV+E+RR+KE
Sbjct: 305 HHRKVIEMRRKKE 317

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|O65515|GATA7_ARATH GATA transcription factor 7 OS=Arabidopsis thaliana GN=GATA7 PE=2 SV=1

 Score =  128 bits (321), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 88/226 (38%), Positives = 100/226 (44%), Gaps = 60/226 (26%)

Query: 102 FSGDLCVPYDDLAELEWLSNIVEESFSCEDLQKLQLISGMKARSDHSSETRQFQPGTNRI 161
           F GD   P  DL +LEWLSN VE+SFS                                 
Sbjct: 62  FPGD--APVGDLEDLEWLSNFVEDSFS--------------------------------- 86

Query: 162 YHGSTNTSNNTNANPNNPVFNPEMAVPAKARSKRSRAAPCSWASRLLVLSPPESTSEPEI 221
               +  S++   NP   V      VP K RSKR R     W+                 
Sbjct: 87  ---ESYISSDFPVNPVASVEVRRQCVPVKPRSKRRRTNGRIWSM---------------- 127

Query: 222 IPTGPPPPPLQGKKSVKACGSKKKDSGDEGNGEG----RKCLHCATDKTPQWRTGPMGPK 277
               P P         K  G +K D+   G  +     R C HC   KTPQWR GP+G K
Sbjct: 128 --ESPSPLLSTAVARRKKRGRQKVDASYGGVVQQQQLRRCCSHCGVQKTPQWRMGPLGAK 185

Query: 278 TLCNACGVRYKSGRLVPEYRPASSPTFVLTKHSNSHRKVLELRRQK 323
           TLCNACGVR+KSGRL+PEYRPA SPTF    HSNSHRKVLELR  K
Sbjct: 186 TLCNACGVRFKSGRLLPEYRPACSPTFTNEIHSNSHRKVLELRLMK 231

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6DBP8|GAT11_ARATH GATA transcription factor 11 OS=Arabidopsis thaliana GN=GATA11 PE=2 SV=1

 Score =  125 bits (314), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 54/75 (72%), Positives = 63/75 (84%)

Query: 252 NGEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTKHSN 311
           +G  RKC HC T KTPQWR GP GPKTLCNACGVR++SGRLVPEYRPASSPTF+   HSN
Sbjct: 216 DGIVRKCTHCETTKTPQWREGPSGPKTLCNACGVRFRSGRLVPEYRPASSPTFIPAVHSN 275

Query: 312 SHRKVLELRRQKELQ 326
           SHRK++E+RR+ + Q
Sbjct: 276 SHRKIIEMRRKDDEQ 290

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LAU9|GATA1_ARATH GATA transcription factor 1 OS=Arabidopsis thaliana GN=GATA1 PE=2 SV=2

 Score =  125 bits (313), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 53/68 (77%), Positives = 59/68 (86%)

Query: 255 GRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTKHSNSHR 314
           GRKC HC  +KTPQWR GP GPKTLCNACGVRYKSGRLVPEYRPA+SPTF    HSNSHR
Sbjct: 193 GRKCQHCGAEKTPQWRAGPAGPKTLCNACGVRYKSGRLVPEYRPANSPTFTAELHSNSHR 252

Query: 315 KVLELRRQ 322
           K++E+R+Q
Sbjct: 253 KIVEMRKQ 260

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L4M6|GATA3_ARATH GATA transcription factor 3 OS=Arabidopsis thaliana GN=GATA3 PE=2 SV=2

 Score =  120 bits (302), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 54/70 (77%), Positives = 59/70 (84%)

Query: 256 RKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTKHSNSHRK 315
           R+C HC T+ TPQWRTGP+GPKTLCNACGVR+KSGRL PEYRPA SPTF    HSN HRK
Sbjct: 180 RRCSHCGTNNTPQWRTGPVGPKTLCNACGVRFKSGRLCPEYRPADSPTFSNEIHSNLHRK 239

Query: 316 VLELRRQKEL 325
           VLELR+ KEL
Sbjct: 240 VLELRKSKEL 249

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SV30|GATA8_ARATH GATA transcription factor 8 OS=Arabidopsis thaliana GN=GATA8 PE=2 SV=1

 Score =  120 bits (302), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 51/68 (75%), Positives = 57/68 (83%)

Query: 256 RKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTKHSNSHRK 315
           RKC+HC   KTPQWR GPMGPKTLCNACGVRYKSGRL PEYRPA+SPTF    HSNSH+K
Sbjct: 229 RKCMHCEVTKTPQWRLGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFTPALHSNSHKK 288

Query: 316 VLELRRQK 323
           V E+R ++
Sbjct: 289 VAEMRNKR 296

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	372
224089006	357	predicted protein [Populus trichocarpa]	0.935	0.974	0.687	1e-128
225429918	342	PREDICTED: GATA transcription factor 9 [	0.892	0.970	0.641	1e-121
302398791	375	GATA domain class transcription factor [	0.940	0.933	0.627	1e-116
225442507	329	PREDICTED: GATA transcription factor 9 [	0.868	0.981	0.576	1e-107
224141727	320	predicted protein [Populus trichocarpa]	0.827	0.962	0.637	1e-106
357436215	344	GATA transcription factor [Medicago trun	0.862	0.933	0.593	1e-105
449507279	338	PREDICTED: GATA transcription factor 12-	0.892	0.982	0.595	1e-100
356563745	366	PREDICTED: GATA transcription factor 12-	0.892	0.907	0.619	1e-100
449461391	336	PREDICTED: GATA transcription factor 12-	0.887	0.982	0.587	2e-98
297743213	283	unnamed protein product [Vitis vinifera]	0.741	0.975	0.605	2e-96

>gi|224089006|ref|XP_002308598.1| predicted protein [Populus trichocarpa] gi|222854574|gb|EEE92121.1| predicted protein [Populus trichocarpa]

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 262/381 (68%), Positives = 291/381 (76%), Gaps = 33/381 (8%)

Query: 1   MEVPEFFQGS-YCA-QFSA-EKHHSLDSNKSSNGGDHFIVEELLDFSNED--AILTDAAA 55
           ME PE +  + +C+ QF++ EKHHSLDSNKS  GGDHFIVE+LLDFSNED  A++TD + 
Sbjct: 1   MEAPELYGTTGFCSSQFTSNEKHHSLDSNKSIGGGDHFIVEDLLDFSNEDEDAMVTDPSN 60

Query: 56  FDDVT--ANSTDSSTVTVVDSCNSSSFSGCGPN-FPGENNGCRNFSDAHFSGDLCVPYDD 112
            + VT   NSTDSSTVT VDSCNSSSFSGC P+ F G+             G+LCVPYDD
Sbjct: 61  NNIVTPTTNSTDSSTVTFVDSCNSSSFSGCEPSGFNGD------------IGELCVPYDD 108

Query: 113 LAELEWLSNIVEESFSCEDLQKLQLISGMKARSDHSSETRQFQPGTNRIYHGSTNTSNNT 172
           LAELEWLSN VEESFS EDLQ+LQLISGMKAR D SSETR FQ   N       N  N +
Sbjct: 109 LAELEWLSNFVEESFSSEDLQRLQLISGMKARPDESSETRHFQSDDN-------NNGNVS 161

Query: 173 NANPNNPVFNPEMAVPAKARSKRSRAAPCSWASRLLVLSPPESTSEPEIIPTGPPPPPLQ 232
           N   NN +FNPEMAVPAKARSKRSRAAP +WASRLLVLS   S+SEPEIIP G    P  
Sbjct: 162 NICNNNTMFNPEMAVPAKARSKRSRAAPGNWASRLLVLSRTTSSSEPEIIP-GSTQHPNS 220

Query: 233 GKKSVKACGSKKKDSGDEGNGEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 292
           GKK++K     KK  GD   G+GRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL
Sbjct: 221 GKKTIKGAVGLKKRDGDVEGGDGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 280

Query: 293 VPEYRPASSPTFVLTKHSNSHRKVLELRRQKELQRAQQQQHQQQQFMHHHHHHQNMMFDL 352
           VPEYRPA+SPTF+LTKHSNSHRKVLELRRQKE+ RAQQQ    Q      HHHQNM+FD+
Sbjct: 281 VPEYRPAASPTFMLTKHSNSHRKVLELRRQKEMVRAQQQHQHHQY----LHHHQNMVFDV 336

Query: 353 SN-GDDYLIHQHVGPDFRQLI 372
           SN GDDYLIHQHVGPDFR++I
Sbjct: 337 SNGGDDYLIHQHVGPDFRRMI 357

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429918|ref|XP_002283745.1| PREDICTED: GATA transcription factor 9 [Vitis vinifera] gi|147811360|emb|CAN61228.1| hypothetical protein VITISV_004677 [Vitis vinifera]

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 245/382 (64%), Positives = 277/382 (72%), Gaps = 50/382 (13%)

Query: 1   MEVPEFFQGSYC----AQFSAEKHHSLDSNKSSNGGDHFIVEELLDFSNEDAILTDAAAF 56
           ME PEFFQG +C    +QF  EK  S   +    GGDHFI+E+LLDFSN+DA++TD   F
Sbjct: 1   MEAPEFFQGGFCIAPASQFGTEKRIS---DTKPGGGDHFIIEDLLDFSNDDAVITDGT-F 56

Query: 57  DDVTANSTDSSTVTVVDSCNSSSFSGCGPNFPGENNGCRNFSDAHFSGDLCVPYDDLAEL 116
           D VT  STDSST T+VDSCNS   SGC P F G+  G RN++DAHFS DLCVPYDDLAEL
Sbjct: 57  DTVTGTSTDSSTFTIVDSCNS--VSGCEPQFAGDI-GSRNYTDAHFSSDLCVPYDDLAEL 113

Query: 117 EWLSNIVEESFSCEDLQKLQLISGMKARSDHSSETRQFQPGTNRIYHGSTNTSNNTNANP 176
           EWLSNIVEESFS EDL+KLQLISGMKA ++ +SETR FQP  N+                
Sbjct: 114 EWLSNIVEESFSSEDLEKLQLISGMKANTEEASETRDFQPENNQ---------------- 157

Query: 177 NNPVFNPEMAV---PAKARSKRSRAAPCSWASRLLVLSPPESTSEPEIIPTGPPPPPLQG 233
                NP +++   PAKARSKR+RA PC W SRLL LSP  S SE +IIP      P  G
Sbjct: 158 -----NPPLSLRDFPAKARSKRARAMPCKWTSRLLALSPTSSLSETDIIP------PNSG 206

Query: 234 KKSVKACGSKKKDSGDE---GNGEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSG 290
           KKS K+   KKK+S +    G  +GRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSG
Sbjct: 207 KKSTKS-APKKKESPEVVAGGCSDGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSG 265

Query: 291 RLVPEYRPASSPTFVLTKHSNSHRKVLELRRQKELQRAQQQQHQQQQFMHHHHHHQNMMF 350
           RLVPEYRPA+SPTFVLTKHSNSHRKVLELRRQKE+ R+Q Q  QQQ       HHQNM+F
Sbjct: 266 RLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMVRSQHQHQQQQF-----LHHQNMVF 320

Query: 351 DLSNGDDYLIHQHVGPDFRQLI 372
           D+ NGDDYLIHQH+GPDFR LI
Sbjct: 321 DVPNGDDYLIHQHLGPDFRHLI 342

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398791|gb|ADL36690.1| GATA domain class transcription factor [Malus x domestica]

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 249/397 (62%), Positives = 289/397 (72%), Gaps = 47/397 (11%)

Query: 1   MEVPEFFQGSYCAQFSAEKHHSLDS--NKSS--NGGDHFIVEELLDFSNED-AILTDA-- 53
           ME PE+++ ++C QF+ EK HS DS  NK++   GGDHF+VE+LLDFSNED A++TD   
Sbjct: 1   MEAPEYYKKTFCPQFTPEKRHSFDSSNNKTAIGGGGDHFMVEDLLDFSNEDDAVITDGGC 60

Query: 54  -AAFDDVTANSTDSSTVTVVDSCNSSSFSGCGPNFPGENNGCRNFSDAHFSGDLCVPYDD 112
            AAFD+V  NSTDSS + V+DSCNSSSFSG  PNF     G RN +D  FS DLCVP DD
Sbjct: 61  PAAFDNVIGNSTDSSPLNVIDSCNSSSFSGSEPNF-----GSRNLADGPFSSDLCVPCDD 115

Query: 113 LAELEWLSNIVEESFSCEDLQKLQLISGMKARSDHSS-ETRQFQPGTNRIYHGSTNTSNN 171
           LAELEWLSN VEESFS EDLQKLQLISGMK R D ++ ETRQFQP   R  +     +N 
Sbjct: 116 LAELEWLSNFVEESFSSEDLQKLQLISGMKPRPDQAAFETRQFQPDPTRTNNNPNGNNNP 175

Query: 172 TNANPNNPVFNPEMAVPAKARSKRSRAAPCSWASRLLVLSPPESTSEPEIIPTGP----- 226
                       E++VPAKARSKRSRAAPC+W SRLL+LS PE +   +++ +       
Sbjct: 176 IFNP--------EVSVPAKARSKRSRAAPCNWTSRLLLLSTPEQS---DVVVSAAEAASP 224

Query: 227 -PPPPLQGKKSVKACGSKK--KDSGDEGNGEGRKCLHCATDKTPQWRTGPMGPKTLCNAC 283
            PPP   GKK+VK+   KK  ++    G G+GRKC+HCATDKTPQWRTGPMGPKTLCNAC
Sbjct: 225 LPPPSSTGKKTVKSAPKKKESQEGSGGGPGDGRKCMHCATDKTPQWRTGPMGPKTLCNAC 284

Query: 284 GVRYKSGRLVPEYRPASSPTFVLTKHSNSHRKVLELRRQKELQRAQQQQHQQQQFMHH-- 341
           GVRYKSGRLVPEYRPA+SPTFVLTKHSNSHRKVLELRRQKE+ RA      QQ F+H   
Sbjct: 285 GVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEIVRA------QQTFIHQVP 338

Query: 342 ------HHHHQNMMFDLSNGDDYLIHQHVGPDFRQLI 372
                 HHHHQNM+FD+SNG DYLIHQHVGPDFRQLI
Sbjct: 339 PPHHHHHHHHQNMVFDVSNGGDYLIHQHVGPDFRQLI 375

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442507|ref|XP_002284028.1| PREDICTED: GATA transcription factor 9 [Vitis vinifera]

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 218/378 (57%), Positives = 254/378 (67%), Gaps = 55/378 (14%)

Query: 1   MEVPEFFQGSYCA----QFSAEKHHSLDSNKSSNGGDHFIVEELLDFSNEDAILTDAAAF 56
           ME   FF G Y +    +FS EK       +    GDHF+VE+LLDF N+D I+TD   F
Sbjct: 1   MEASSFFPGGYYSAGADEFSQEK-------REQKPGDHFLVEDLLDFPNDDDIMTDGF-F 52

Query: 57  DDVTANSTDSSTVTVVDSCNSSSFSGCGPNFPGENNGCRNFSDAHFSGDLCVPYDDLAEL 116
           D VT NSTDSSTVTVVDSCNSS  SG  P+F G + GCRNF+DA FSG+LCVP D+LAEL
Sbjct: 53  DTVTGNSTDSSTVTVVDSCNSS-LSGNEPHFSG-DVGCRNFTDAQFSGELCVPCDELAEL 110

Query: 117 EWLSNIVEESFSCEDLQKLQLISGMKARSDHSSETR--QFQPGTNRIYHGSTNTSNNTNA 174
           EWLSN VEESFS EDL K+Q++SG+KA   H++E+   QFQP T R              
Sbjct: 111 EWLSNFVEESFSSEDLHKIQVLSGIKAPL-HTTESPEPQFQPETAR-------------- 155

Query: 175 NPNNPVFNPEMAVPAKARSKRSRAAPCSWASRLLVLSPPESTSEPEIIPTGPPPPPLQGK 234
             + P+  P M VP KARSKR R+ PC W++RLLVLSP  S+SE +             K
Sbjct: 156 --SEPILQPPMNVPGKARSKRPRSVPCDWSTRLLVLSPATSSSESDAF-----------K 202

Query: 235 KSVKACGSKKKDSGDEGNGEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVP 294
           K  K   SKKK++ D   G+GRKCLHCA +KTPQWRTGPMGPKTLCNACGVR+KSGRLVP
Sbjct: 203 KPPKTTSSKKKENSDSA-GDGRKCLHCAAEKTPQWRTGPMGPKTLCNACGVRFKSGRLVP 261

Query: 295 EYRPASSPTFVLTKHSNSHRKVLELRRQKELQRAQQQQHQQQQFMHHHHHHQNMMFDLSN 354
           EYRPASSPTFV  KHSNSHRKVLELRRQK+LQR+           HH    Q  +F  +N
Sbjct: 262 EYRPASSPTFVSAKHSNSHRKVLELRRQKDLQRSH----------HHQFLGQTSIFSATN 311

Query: 355 GDDYLIHQHVGPDFRQLI 372
           GDDYLIH H GPDFR +I
Sbjct: 312 GDDYLIHHHAGPDFRHMI 329

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141727|ref|XP_002324216.1| predicted protein [Populus trichocarpa] gi|222865650|gb|EEF02781.1| predicted protein [Populus trichocarpa]

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 225/353 (63%), Positives = 258/353 (73%), Gaps = 45/353 (12%)

Query: 31  GGDHFIVEELLDFSNED--AILTDAAAFDDV---TANSTDSSTVTVVDSCNSSSFSGCGP 85
           GGDHFIVE+LLDFSNED  A++TD    + +   T NSTDSSTVT+ ++   +++  C  
Sbjct: 2   GGDHFIVEDLLDFSNEDDDAMITDPNNNNTIVTATTNSTDSSTVTIKETHQYANYGFC-- 59

Query: 86  NFPGENNGCRNFSDAHFSGDLCVPYDDLAELEWLSNIVEESFSCEDLQKLQLISGMKARS 145
                                 V YDDLAELEWLSN VEESFS EDLQ+LQLISGMKAR 
Sbjct: 60  --------------------CYVQYDDLAELEWLSNFVEESFSSEDLQRLQLISGMKARP 99

Query: 146 DHSSETRQFQPGTNRIYHGSTNTSNNTN----ANPNNPVFNPEMAVPAKARSKRSRAAPC 201
           D SS++R F+       HG T+ +NN +    +N NN +FNPE AVPAKARSKRSRAAP 
Sbjct: 100 DESSKSRHFRT------HGDTDDNNNGDVSNISNINNTMFNPETAVPAKARSKRSRAAPG 153

Query: 202 SWASRLLVLSPPESTSEPEIIPTGPPPPPLQGKKSVKA-CGSKKKDSGDEGNGEGRKCLH 260
           +WASRLLVLSP  S+S+ EII  GP P P  GKK++K     KK+D G EG  +GRKCLH
Sbjct: 154 NWASRLLVLSPTTSSSDTEII-AGPTPHPNSGKKTIKVEARQKKRDGGVEG-CDGRKCLH 211

Query: 261 CATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTKHSNSHRKVLELR 320
           CATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPA+SPTF+LTKHSNSHRKVLELR
Sbjct: 212 CATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFMLTKHSNSHRKVLELR 271

Query: 321 RQKELQRAQQQQHQQQQFMHHHHHHQNMMFDLSN-GDDYLIHQHVGPDFRQLI 372
           RQKE+ RAQQQ   QQ      HHHQNM+F +SN GDDYLIHQHVGPDFRQ+I
Sbjct: 272 RQKEMVRAQQQHQHQQF----LHHHQNMVFGVSNGGDDYLIHQHVGPDFRQMI 320

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357436215|ref|XP_003588383.1| GATA transcription factor [Medicago truncatula] gi|355477431|gb|AES58634.1| GATA transcription factor [Medicago truncatula]

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 210/354 (59%), Positives = 248/354 (70%), Gaps = 33/354 (9%)

Query: 26  NKSSNGGDHFIVEELLDFSNE---DAILTDAAAFDDVTANST-DSSTVTVVDSCNSSSFS 81
           NK++N  D+FIVE+LL+ +N+   D  +      D  T NST  SST+TVV+S + SS S
Sbjct: 17  NKTNNTTDNFIVEDLLNLNNDIDDDTTIISDTNLDSATGNSTASSSTLTVVNSVSPSSLS 76

Query: 82  GCGPNFPGENNGCRNFSDAHFSGDLCVPYDDLA-ELEWLSNIVEESFSCEDLQKLQLISG 140
           GC PN   +  GC+NFSD+HFSGDLC+P DDLA +LEWLSNIVEESFS EDLQK+QLISG
Sbjct: 77  GCDPNVVPDI-GCQNFSDSHFSGDLCIPEDDLAGDLEWLSNIVEESFSSEDLQKMQLISG 135

Query: 141 MKARSDHSSETRQFQPGTNRIYHGSTNTSNNTNANPNNPVFNPEMAVPAKARSKRSRAAP 200
           MK R+         QP                  N NNP+FN E+ VPAKARSKR+R  P
Sbjct: 136 MKVRNQDEEPRELSQP------------------NRNNPIFNKEVLVPAKARSKRTRGPP 177

Query: 201 CSWASRLLVLS--PPESTSEPEIIPTGPPPPPLQGKKSVKACGSKKKDSGDEGNGEGRKC 258
           C W+SRLLVLS   P S+    +IPT   P     +K  K    ++KD+     G+GR+C
Sbjct: 178 CDWSSRLLVLSQTTPSSSESEFLIPTPTLPTVTVPRKQAKT-APRRKDNDGGSGGDGRRC 236

Query: 259 LHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTKHSNSHRKVLE 318
           LHC TDKTPQWRTGP GPKTLCNACGVRYKSGRLVPEYRPA+SPTFVLTKHSNSHRKVLE
Sbjct: 237 LHCMTDKTPQWRTGPNGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLE 296

Query: 319 LRRQKELQRAQQQQHQQQQFMHHHHHHQNMMFDLSNGDDYLIHQHVGPDFRQLI 372
           LRRQKE+ RA   QHQQ Q +     HQ+MMFD+SN DDYLIHQH+GPDFRQ++
Sbjct: 297 LRRQKEMLRA--HQHQQNQIL----QHQSMMFDMSNNDDYLIHQHMGPDFRQMM 344

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449507279|ref|XP_004162986.1| PREDICTED: GATA transcription factor 12-like [Cucumis sativus]

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 225/378 (59%), Positives = 259/378 (68%), Gaps = 46/378 (12%)

Query: 1   MEVPEFFQ-GSYCAQFSAEKHHSLDSNKSSNGG-DHFIVEELLDFSNEDAILTDAAAFDD 58
           ME PE+FQ  +Y +QFS+       +  ++    DHFIVEELLDFSN +         DD
Sbjct: 1   MEAPEYFQINAYSSQFSSPDDADATTTAAAAAAPDHFIVEELLDFSNNE---------DD 51

Query: 59  VTANSTDSSTVTVVDSCNSSSFSGCGPNFPGENNGCRNFSDAHFSGDLCVPYDDLAELEW 118
             ANST+SS VTV++SCNSSS      +F  + +G  N  DAHFS +LCVPYDDLAELEW
Sbjct: 52  --ANSTESSAVTVMESCNSSS------SFFEDISGS-NLGDAHFSSELCVPYDDLAELEW 102

Query: 119 LSNIVEESFSCEDLQKLQLISGMKARSDHSSETRQFQPGTNRIYHGSTNTSNNTNANPNN 178
           LSN VEESFS ED+QKL+LISG+K +SD    T+  QP   R                  
Sbjct: 103 LSNFVEESFSSEDMQKLELISGVKVKSDEPP-TQSPQPTATRSAAA-------------- 147

Query: 179 PVFNPEM-AVPAKARSKRSRAAPCSWA-SRLLVLSPPESTSEPEIIPTGPPPPPLQGKKS 236
            +F PE+ +VPAKARSKRSRA P +W  S LL LS P  T+E E  P    P P++    
Sbjct: 148 -IFKPEIVSVPAKARSKRSRALPSNWNNSALLPLSSP--TAESETTPPIEQPHPIKKTLP 204

Query: 237 VKACGSKKKDSGDEG--NGEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVP 294
             A  +KKKDS D G  +GEGRKC+HCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVP
Sbjct: 205 KAAATAKKKDSPDLGFSSGEGRKCMHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVP 264

Query: 295 EYRPASSPTFVLTKHSNSHRKVLELRRQKELQRAQQQQHQQQQFMHHHHHHQNMMFDLSN 354
           EYRPA+SPTFVLTKHSNSHRKVLELRRQKE+ RAQQQQ Q         H Q+M+FD SN
Sbjct: 265 EYRPAASPTFVLTKHSNSHRKVLELRRQKEILRAQQQQPQHLL----LDHRQDMIFDASN 320

Query: 355 GDDYLIHQHVGPDFRQLI 372
           GDDYLIHQHVGPDFRQLI
Sbjct: 321 GDDYLIHQHVGPDFRQLI 338

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563745|ref|XP_003550120.1| PREDICTED: GATA transcription factor 12-like [Glycine max]

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 223/360 (61%), Positives = 257/360 (71%), Gaps = 28/360 (7%)

Query: 30  NGGDHFIVEELLDFSNEDAILTDAAAFDDVTANSTDSSTVTVVDSCNSSSFSGCGPNFPG 89
           N  DHFIVE+LLDFSN+D ++TDA  FD +T +S+  +T     SCNSSSFSG  PN   
Sbjct: 18  NNSDHFIVEDLLDFSNDDVVITDAT-FDSITTDSSTVTTTV--HSCNSSSFSGSDPNT-V 73

Query: 90  ENNGCRNFSDAHFSGDLCVPYDDLAELEWLSNIVEESFSCEDLQKLQLISGMKARSDHSS 149
            + G RN SD HFS DLCVPYDD+AELEWLSN VEESFS EDL K+QLISGM A+++  S
Sbjct: 74  PDIGSRNLSDGHFSDDLCVPYDDIAELEWLSNFVEESFSSEDLHKMQLISGMNAQNNDVS 133

Query: 150 ETRQFQPGTNRIYHGSTNTSNNTNANP--NNPVFNPEMAVPAKARSKRSRAAPCSWASRL 207
           E R+F       Y  +T  S +    P  N+P+FN E++VPAKARSKRSR  PC+WASRL
Sbjct: 134 EAREFH------YEPTTTRSGSHTPEPTRNSPIFNSEVSVPAKARSKRSRGPPCNWASRL 187

Query: 208 LVLSPPESTSEPEII---PTGPPPPPLQGKKSVKACGSKKKDSGDEGNGEG----RKCLH 260
           LVLSP  S+S+ E++   P    P P   KK  K  G +KKDS            R+CLH
Sbjct: 188 LVLSPTSSSSDNEVVVPSPATAEPCPTPAKKMAKV-GPRKKDSSSSDGNGSGGDGRRCLH 246

Query: 261 CATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTKHSNSHRKVLELR 320
           CATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPA+SPTFVLTKHSNSHRKVLELR
Sbjct: 247 CATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELR 306

Query: 321 RQKELQRA--------QQQQHQQQQFMHHHHHHQNMMFDLSNGDDYLIHQHVGPDFRQLI 372
           RQKE+ R+        QQ         HH+ HHQNMMFD+SNGDDYLIHQ+VGPDFRQLI
Sbjct: 307 RQKEMVRSQQHHHQHQQQFLQHHHHNHHHYQHHQNMMFDVSNGDDYLIHQYVGPDFRQLI 366

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461391|ref|XP_004148425.1| PREDICTED: GATA transcription factor 12-like [Cucumis sativus]

 Score =  365 bits (937), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 222/378 (58%), Positives = 257/378 (67%), Gaps = 48/378 (12%)

Query: 1   MEVPEFFQ-GSYCAQFSAEKHHSLDSNKSSNGG-DHFIVEELLDFSNEDAILTDAAAFDD 58
           ME PE+FQ  +Y +QFS+       +  ++    DHFIVEELLDFSN +         DD
Sbjct: 1   MEAPEYFQINAYSSQFSSPDDADATTTAAAAAAPDHFIVEELLDFSNNE---------DD 51

Query: 59  VTANSTDSSTVTVVDSCNSSSFSGCGPNFPGENNGCRNFSDAHFSGDLCVPYDDLAELEW 118
               +T+SS VTV++SCNSSS      +F  + +G  N  DAHFS +LCVPYDDLAELEW
Sbjct: 52  ----ATESSAVTVMESCNSSS------SFFEDISGS-NLGDAHFSSELCVPYDDLAELEW 100

Query: 119 LSNIVEESFSCEDLQKLQLISGMKARSDHSSETRQFQPGTNRIYHGSTNTSNNTNANPNN 178
           LSN VEESFS ED+QKL+LISG+K +SD    T+  QP   R                  
Sbjct: 101 LSNFVEESFSSEDMQKLELISGVKVKSDEPP-TQSPQPTATRSAAA-------------- 145

Query: 179 PVFNPEM-AVPAKARSKRSRAAPCSWA-SRLLVLSPPESTSEPEIIPTGPPPPPLQGKKS 236
            +F PE+ +VPAKARSKRSRA P +W  S LL LS P  T+E E  P    P P++    
Sbjct: 146 -IFKPEIVSVPAKARSKRSRALPSNWNNSALLPLSSP--TAESETTPPIEQPHPIKKTLP 202

Query: 237 VKACGSKKKDSGDEG--NGEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVP 294
             A  +KKKDS D G  +GEGRKC+HCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVP
Sbjct: 203 KAAATAKKKDSPDLGFSSGEGRKCMHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVP 262

Query: 295 EYRPASSPTFVLTKHSNSHRKVLELRRQKELQRAQQQQHQQQQFMHHHHHHQNMMFDLSN 354
           EYRPA+SPTFVLTKHSNSHRKVLELRRQKE+ RAQQQQ Q         H Q+M+FD SN
Sbjct: 263 EYRPAASPTFVLTKHSNSHRKVLELRRQKEILRAQQQQPQHLL----LDHRQDMIFDASN 318

Query: 355 GDDYLIHQHVGPDFRQLI 372
           GDDYLIHQHVGPDFRQLI
Sbjct: 319 GDDYLIHQHVGPDFRQLI 336

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743213|emb|CBI36080.3| unnamed protein product [Vitis vinifera]

 Score =  358 bits (919), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 193/319 (60%), Positives = 222/319 (69%), Gaps = 43/319 (13%)

Query: 56  FDDVTANSTDSSTVTVVDSCNSSSFSGCGPNFPGENNGCRNFSDAHFSGDLCVPYDDLAE 115
           FD VT NSTDSSTVTVVDSCNSS  SG  P+F G+  GCRNF+DA FSG+LCVP D+LAE
Sbjct: 6   FDTVTGNSTDSSTVTVVDSCNSS-LSGNEPHFSGDV-GCRNFTDAQFSGELCVPCDELAE 63

Query: 116 LEWLSNIVEESFSCEDLQKLQLISGMKARSDHSSETR--QFQPGTNRIYHGSTNTSNNTN 173
           LEWLSN VEESFS EDL K+Q++SG+KA   H++E+   QFQP T R             
Sbjct: 64  LEWLSNFVEESFSSEDLHKIQVLSGIKA-PLHTTESPEPQFQPETAR------------- 109

Query: 174 ANPNNPVFNPEMAVPAKARSKRSRAAPCSWASRLLVLSPPESTSEPEIIPTGPPPPPLQG 233
              + P+  P M VP KARSKR R+ PC W++RLLVLSP  S+SE +             
Sbjct: 110 ---SEPILQPPMNVPGKARSKRPRSVPCDWSTRLLVLSPATSSSESDAF----------- 155

Query: 234 KKSVKACGSKKKDSGDEGNGEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLV 293
           KK  K   SKKK++ D   G+GRKCLHCA +KTPQWRTGPMGPKTLCNACGVR+KSGRLV
Sbjct: 156 KKPPKTTSSKKKENSDSA-GDGRKCLHCAAEKTPQWRTGPMGPKTLCNACGVRFKSGRLV 214

Query: 294 PEYRPASSPTFVLTKHSNSHRKVLELRRQKELQRAQQQQHQQQQFMHHHHHHQNMMFDLS 353
           PEYRPASSPTFV  KHSNSHRKVLELRRQK+LQR+           HH    Q  +F  +
Sbjct: 215 PEYRPASSPTFVSAKHSNSHRKVLELRRQKDLQRSH----------HHQFLGQTSIFSAT 264

Query: 354 NGDDYLIHQHVGPDFRQLI 372
           NGDDYLIH H GPDFR +I
Sbjct: 265 NGDDYLIHHHAGPDFRHMI 283

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	372
TAIR|locus:2145259	331	GATA12 "GATA transcription fac	0.325	0.365	0.708	1.4e-62
TAIR|locus:2123738	308	GATA9 "GATA transcription fact	0.311	0.376	0.633	1.1e-58
TAIR|locus:2055589	264	GATA2 "GATA transcription fact	0.206	0.291	0.833	5.9e-42
TAIR|locus:2103346	240	GATA4 "GATA transcription fact	0.196	0.304	0.863	9.5e-42
TAIR|locus:2155056	339	GATA5 "GATA transcription fact	0.185	0.203	0.768	9.2e-36
TAIR|locus:2122214	238	GATA7 "GATA transcription fact	0.182	0.285	0.75	1.2e-35
TAIR|locus:2139594	269	GATA3 "GATA transcription fact	0.188	0.260	0.771	4e-35
TAIR|locus:2080828	312	GATA6 "GATA transcription fact	0.185	0.221	0.724	1.5e-33
TAIR|locus:2082637	322	BME3 "BLUE MICROPYLAR END 3" [	0.182	0.211	0.75	2.6e-30
TAIR|locus:2205100	303	GATA11 "GATA transcription fac	0.209	0.257	0.687	3.9e-28

TAIR|locus:2145259 GATA12 "GATA transcription factor 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 469 (170.2 bits), Expect = 1.4e-62, Sum P(2) = 1.4e-62
 Identities = 90/127 (70%), Positives = 99/127 (77%)

Query:   247 SGDEGNGEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPASSPTFVL 306
             S + G  E R+CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPA+SPTFVL
Sbjct:   210 SPESGGAEERRCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVL 269

Query:   307 TKHSNSHRKVLELRRQKELQRAXXXXXXXXXXXXXXXXXXNMMFDLSN-GDDYLIHQHVG 365
              KHSNSHRKV+ELRRQKE+ RA                   M+FD+S+ GDDYLIH +VG
Sbjct:   270 AKHSNSHRKVMELRRQKEMSRAHHEFIHHHHGTDTA-----MIFDVSSDGDDYLIHHNVG 324

Query:   366 PDFRQLI 372
             PDFRQLI
Sbjct:   325 PDFRQLI 331

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0007623 "circadian rhythm" evidence=IEP

GO:0009416 "response to light stimulus" evidence=IEP

TAIR|locus:2123738 GATA9 "GATA transcription factor 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 424 (154.3 bits), Expect = 1.1e-58, Sum P(3) = 1.1e-58
 Identities = 83/131 (63%), Positives = 97/131 (74%)

Query:   246 DSGDEGNGEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPASSPTFV 305
             D G+ G G  R+CLHCAT+KTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPASSPTFV
Sbjct:   189 DCGESGGG--RRCLHCATEKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPASSPTFV 246

Query:   306 LTKHSNSHRKVLELRRQKELQRAXXXXXXXXXXXXXXXXXXNMMFDL-SNGDDYLIHQ-- 362
             + +HSNSHRKV+ELRRQKE++                    N++ D+ SNG+D+L+H   
Sbjct:   247 MARHSNSHRKVMELRRQKEMR---------DEHLLSQLRCENLLMDIRSNGEDFLMHNNT 297

Query:   363 -HVGPDFRQLI 372
              HV PDFR LI
Sbjct:   298 NHVAPDFRHLI 308

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0007623 "circadian rhythm" evidence=IEP

GO:0009416 "response to light stimulus" evidence=IEP

TAIR|locus:2055589 GATA2 "GATA transcription factor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 365 (133.5 bits), Expect = 5.9e-42, Sum P(2) = 5.9e-42
 Identities = 65/78 (83%), Positives = 73/78 (93%)

Query:   250 EGNGEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTKH 309
             EG G  R+C HCA++KTPQWRTGP+GPKTLCNACGVR+KSGRLVPEYRPASSPTFVLT+H
Sbjct:   174 EGGGM-RRCTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRLVPEYRPASSPTFVLTQH 232

Query:   310 SNSHRKVLELRRQKELQR 327
             SNSHRKV+ELRRQKE+ R
Sbjct:   233 SNSHRKVMELRRQKEVMR 250

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0009416 "response to light stimulus" evidence=IEP

TAIR|locus:2103346 GATA4 "GATA transcription factor 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 361 (132.1 bits), Expect = 9.5e-42, Sum P(2) = 9.5e-42
 Identities = 63/73 (86%), Positives = 70/73 (95%)

Query:   256 RKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTKHSNSHRK 315
             R+C HCA++KTPQWRTGP+GPKTLCNACGVRYKSGRLVPEYRPASSPTFVLT+HSNSHRK
Sbjct:   158 RRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTQHSNSHRK 217

Query:   316 VLELRRQKELQRA 328
             V+ELRRQKE Q +
Sbjct:   218 VMELRRQKEQQES 230

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0009416 "response to light stimulus" evidence=IEP

TAIR|locus:2155056 GATA5 "GATA transcription factor 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 302 (111.4 bits), Expect = 9.2e-36, Sum P(2) = 9.2e-36
 Identities = 53/69 (76%), Positives = 57/69 (82%)

Query:   256 RKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTKHSNSHRK 315
             RKC HC   KTPQWR GPMG KTLCNACGVRYKSGRL+PEYRPA SPTF    HSN HRK
Sbjct:   249 RKCSHCGVQKTPQWRAGPMGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHRK 308

Query:   316 VLELRRQKE 324
             V+E+RR+KE
Sbjct:   309 VIEMRRKKE 317

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

TAIR|locus:2122214 GATA7 "GATA transcription factor 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 282 (104.3 bits), Expect = 1.2e-35, Sum P(3) = 1.2e-35
 Identities = 51/68 (75%), Positives = 54/68 (79%)

Query:   256 RKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTKHSNSHRK 315
             R C HC   KTPQWR GP+G KTLCNACGVR+KSGRL+PEYRPA SPTF    HSNSHRK
Sbjct:   164 RCCSHCGVQKTPQWRMGPLGAKTLCNACGVRFKSGRLLPEYRPACSPTFTNEIHSNSHRK 223

Query:   316 VLELRRQK 323
             VLELR  K
Sbjct:   224 VLELRLMK 231

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0007623 "circadian rhythm" evidence=IEP

GO:0009416 "response to light stimulus" evidence=IEP

TAIR|locus:2139594 GATA3 "GATA transcription factor 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 305 (112.4 bits), Expect = 4.0e-35, Sum P(3) = 4.0e-35
 Identities = 54/70 (77%), Positives = 59/70 (84%)

Query:   256 RKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTKHSNSHRK 315
             R+C HC T+ TPQWRTGP+GPKTLCNACGVR+KSGRL PEYRPA SPTF    HSN HRK
Sbjct:   180 RRCSHCGTNNTPQWRTGPVGPKTLCNACGVRFKSGRLCPEYRPADSPTFSNEIHSNLHRK 239

Query:   316 VLELRRQKEL 325
             VLELR+ KEL
Sbjct:   240 VLELRKSKEL 249

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0007623 "circadian rhythm" evidence=IEP

TAIR|locus:2080828 GATA6 "GATA transcription factor 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 287 (106.1 bits), Expect = 1.5e-33, Sum P(2) = 1.5e-33
 Identities = 50/69 (72%), Positives = 56/69 (81%)

Query:   256 RKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTKHSNSHRK 315
             R+C HC   KTPQWR GP+G KTLCNACGVRYKSGRL+PEYRPA SPTF    HSN H K
Sbjct:   221 RQCGHCGVQKTPQWRAGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHSK 280

Query:   316 VLELRRQKE 324
             V+E+RR+KE
Sbjct:   281 VIEMRRKKE 289

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0009416 "response to light stimulus" evidence=IEP

TAIR|locus:2082637 BME3 "BLUE MICROPYLAR END 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 299 (110.3 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
 Identities = 51/68 (75%), Positives = 57/68 (83%)

Query:   256 RKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTKHSNSHRK 315
             RKC+HC   KTPQWR GPMGPKTLCNACGVRYKSGRL PEYRPA+SPTF    HSNSH+K
Sbjct:   229 RKCMHCEVTKTPQWRLGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFTPALHSNSHKK 288

Query:   316 VLELRRQK 323
             V E+R ++
Sbjct:   289 VAEMRNKR 296

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0009845 "seed germination" evidence=IMP

GO:0007623 "circadian rhythm" evidence=IEP

TAIR|locus:2205100 GATA11 "GATA transcription factor 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 55/80 (68%), Positives = 65/80 (81%)

Query:   249 DEGNGEG--RKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPASSPTFVL 306
             +  N +G  RKC HC T KTPQWR GP GPKTLCNACGVR++SGRLVPEYRPASSPTF+ 
Sbjct:   211 EASNSDGIVRKCTHCETTKTPQWREGPSGPKTLCNACGVRFRSGRLVPEYRPASSPTFIP 270

Query:   307 TKHSNSHRKVLELRRQKELQ 326
               HSNSHRK++E+RR+ + Q
Sbjct:   271 AVHSNSHRKIIEMRRKDDEQ 290

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P69781	GAT12_ARATH	No assigned EC number	0.5239	0.8091	0.9093	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	372
smart00401	52	smart00401, ZnF_GATA, zinc finger binding to DNA c	8e-15
pfam00320	36	pfam00320, GATA, GATA zinc finger	4e-13
cd00202	54	cd00202, ZnF_GATA, Zinc finger DNA binding domain;	2e-12
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	0.003

>gnl|CDD|214648 smart00401, ZnF_GATA, zinc finger binding to DNA consensus sequence [AT]GATA[AG]

 Score = 67.8 bits (166), Expect = 8e-15
 Identities = 26/53 (49%), Positives = 30/53 (56%), Gaps = 2/53 (3%)

Query: 253 GEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPASSPTFV 305
           G GR C +C T +TP WR GP G KTLCNACG+ YK    +   RP S     
Sbjct: 1   GSGRSCSNCGTTETPLWRRGPSGNKTLCNACGLYYKKHGGLK--RPLSLKKDG 51

Length = 52

>gnl|CDD|109380 pfam00320, GATA, GATA zinc finger

 Score = 62.7 bits (153), Expect = 4e-13
 Identities = 20/36 (55%), Positives = 24/36 (66%)

Query: 258 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLV 293
           C +C T KTP WR GP G +TLCNACG+ Y+   L 
Sbjct: 1   CSNCGTTKTPLWRRGPDGNRTLCNACGLYYRKHGLK 36

This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. Length = 36

>gnl|CDD|238123 cd00202, ZnF_GATA, Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

 Score = 60.8 bits (148), Expect = 2e-12
 Identities = 21/48 (43%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 257 KCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPASSPTF 304
            C +C T  TP WR GP G  TLCNACG+ +K        RP S    
Sbjct: 1   ACSNCGTTTTPLWRRGPSGGSTLCNACGLYWKKHG---VMRPLSKRKK 45

Length = 54

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.5 bits (92), Expect = 0.003
 Identities = 16/66 (24%), Positives = 20/66 (30%), Gaps = 1/66 (1%)

Query: 183 PEMAVPAKARSKRSRAAPCSWASRLLVLSPPESTSEPEIIPTGPPPPPLQGKKSVKACGS 242
           PE  +P   R     A P +  +R   L  P S   PE  P      PL       A  +
Sbjct: 395 PEPDLPQPDRHP-GPAKPEAPGARPAELPSPASAPTPEQQPPVARSAPLPPSPQASAPRN 453

Query: 243 KKKDSG 248
                 
Sbjct: 454 VASGKP 459

Length = 620

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	372
cd00202	54	ZnF_GATA Zinc finger DNA binding domain; binds spe	99.48
smart00401	52	ZnF_GATA zinc finger binding to DNA consensus sequ	99.44
PF00320	36	GATA: GATA zinc finger; InterPro: IPR000679 Zinc f	99.32
KOG1601	340	consensus GATA-4/5/6 transcription factors [Transc	99.14
COG5641	498	GAT1 GATA Zn-finger-containing transcription facto	98.35
KOG3554	693	consensus Histone deacetylase complex, MTA1 compon	90.55
PRK12286	57	rpmF 50S ribosomal protein L32; Reviewed	86.1
COG5641	498	GAT1 GATA Zn-finger-containing transcription facto	81.95

>cd00202 ZnF_GATA Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

Probab=99.48  E-value=2e-14  Score=108.55  Aligned_cols=44  Identities=48%  Similarity=0.962  Sum_probs=39.9

Q ss_pred             ccccCCCCCCCccccCCCCCcccchhhhhhhhhCCCCCCCCCCCCCc
Q 017390          257 KCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPASSPT  303 (372)
Q Consensus       257 ~C~~C~t~~TP~WR~GP~G~~tLCNACGl~yk~~rl~p~~RP~~~pt  303 (372)
                      .|+||++++||+||+||.|..+||||||+||++.   ...||+..+.
T Consensus         1 ~C~~C~~~~Tp~WR~g~~~~~~LCNaCgl~~~k~---~~~rp~~~~~   44 (54)
T cd00202           1 ACSNCGTTTTPLWRRGPSGGSTLCNACGLYWKKH---GVMRPLSKRK   44 (54)
T ss_pred             CCCCCCCCCCcccccCCCCcchHHHHHHHHHHhc---CCCCCcccCc
Confidence            5999999999999999988899999999999964   4789988876

>smart00401 ZnF_GATA zinc finger binding to DNA consensus sequence [AT]GATA[AG]

Probab=99.44  E-value=6.4e-14  Score=104.79  Aligned_cols=48  Identities=52%  Similarity=0.998  Sum_probs=39.6

Q ss_pred             CCcccccCCCCCCCccccCCCCCcccchhhhhhhhhCCCCCCCCCCCCCc
Q 017390          254 EGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPASSPT  303 (372)
Q Consensus       254 ~~r~C~~C~t~~TP~WR~GP~G~~tLCNACGl~yk~~rl~p~~RP~~~pt  303 (372)
                      ..++|+||+++.||+||+||.|..+||||||++|++.+.+  +||+.+.+
T Consensus         2 ~~~~C~~C~~~~T~~WR~g~~g~~~LCnaCgl~~~k~~~~--~rp~~~~~   49 (52)
T smart00401        2 SGRSCSNCGTTETPLWRRGPSGNKTLCNACGLYYKKHGGL--KRPLSLKK   49 (52)
T ss_pred             CCCCcCCCCCCCCCccccCCCCCCcEeecccHHHHHcCCC--CCcccccc
Confidence            3578999999999999999999889999999999975432  46665543

>PF00320 GATA: GATA zinc finger; InterPro: IPR000679 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.32  E-value=2.7e-13  Score=94.52  Aligned_cols=34  Identities=59%  Similarity=1.239  Sum_probs=27.2

Q ss_pred             cccCCCCCCCccccCCCCCcccchhhhhhhhhCC
Q 017390          258 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGR  291 (372)
Q Consensus       258 C~~C~t~~TP~WR~GP~G~~tLCNACGl~yk~~r  291 (372)
                      |.||++++||+||+||.|..+||||||++|++.+
T Consensus         1 C~~C~tt~t~~WR~~~~g~~~LCn~Cg~~~kk~~   34 (36)
T PF00320_consen    1 CSNCGTTETPQWRRGPNGNRTLCNACGLYYKKYG   34 (36)
T ss_dssp             -TTT--ST-SSEEEETTSEE-EEHHHHHHHHHHS
T ss_pred             CcCCcCCCCchhhcCCCCCCHHHHHHHHHHHHhC
Confidence            8999999999999999998889999999999754

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents GATA-type zinc fingers (Znf). A number of transcription factors (including erythroid-specific transcription factor and nitrogen regulatory proteins), specifically bind the DNA sequence (A/T)GATA(A/G) [] in the regulatory regions of genes. They are consequently termed GATA-binding transcription factors. The interactions occur via highly-conserved Znf domains in which the zinc ion is coordinated by 4 cysteine residues [, ]. NMR studies have shown the core of the Znf to comprise 2 irregular anti-parallel beta-sheets and an alpha-helix, followed by a long loop to the C-terminal end of the finger. The N-terminal part, which includes the helix, is similar in structure, but not sequence, to the N-terminal zinc module of the glucocorticoid receptor DNA-binding domain. The helix and the loop connecting the 2 beta-sheets interact with the major groove of the DNA, while the C-terminal tail wraps around into the minor groove. It is this tail that is the essential determinant of specific binding. Interactions between the Znf and DNA are mainly hydrophobic, explaining the preponderance of thymines in the binding site; a large number of interactions with the phosphate backbone have also been observed []. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 3GAT_A 2GAT_A 1GAU_A 1GAT_A 1Y0J_A 1GNF_A 2L6Z_A 2L6Y_A 3DFV_D 3DFX_B ....

>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]

Probab=99.14  E-value=4.6e-10  Score=99.63  Aligned_cols=49  Identities=67%  Similarity=1.306  Sum_probs=43.7

Q ss_pred             CcccccCCCCCCCccccCCCCCcccchhhhhhhhhC---CCCCCCCCCCCCc
Q 017390          255 GRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSG---RLVPEYRPASSPT  303 (372)
Q Consensus       255 ~r~C~~C~t~~TP~WR~GP~G~~tLCNACGl~yk~~---rl~p~~RP~~~pt  303 (372)
                      ...|.+|+++.||+||+++.|++.+|||||++|+++   +.++.++....++
T Consensus       199 ~~~c~~~~~~~t~~~r~~~~g~~~~cnacgl~~k~~~~~r~~~~~~~~~~~~  250 (340)
T KOG1601|consen  199 LRQCSNCGTTKTPLWRRGPEGPKSLCNACGLRYKKGGVRRPLPEKRPASSPR  250 (340)
T ss_pred             CcccCCCCCCCCcceecCCCCCccccccchhhhhhcCccccccccCcccccc
Confidence            589999999999999999999999999999999997   6677777766655

>COG5641 GAT1 GATA Zn-finger-containing transcription factor [Transcription]

Probab=98.35  E-value=1.7e-07  Score=97.70  Aligned_cols=52  Identities=37%  Similarity=0.655  Sum_probs=48.0

Q ss_pred             cccccCCCCCCCccccCCCC----CcccchhhhhhhhhCCCCCCCC-CCCCCcccccccc
Q 017390          256 RKCLHCATDKTPQWRTGPMG----PKTLCNACGVRYKSGRLVPEYR-PASSPTFVLTKHS  310 (372)
Q Consensus       256 r~C~~C~t~~TP~WR~GP~G----~~tLCNACGl~yk~~rl~p~~R-P~~~pt~~~~~~s  310 (372)
                      ..|.+|.++.||+|||+..+    .-+|||||||+|+   +|...| |+++++.++..|.
T Consensus       159 ~vc~Nc~t~stPlwrR~~~~~s~~~n~lcnaCgl~~k---lhg~~r~P~t~ks~~~ks~~  215 (498)
T COG5641         159 HVCSNCKTTSTPLWRRASSESSLPGNNLCNACGLYLK---LHGSPRAPISLKSDSIKSRS  215 (498)
T ss_pred             chhccccccCCccccccccccccCCcccccccccccc---ccCCcCCCcccccccccccc
Confidence            48999999999999999993    2899999999999   899999 9999999999877

>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]

Probab=90.55  E-value=0.17  Score=53.56  Aligned_cols=36  Identities=33%  Similarity=0.726  Sum_probs=31.5

Q ss_pred             CCcccccCCCCCCCcc--ccCCCCCcccchhhhhhhhh
Q 017390          254 EGRKCLHCATDKTPQW--RTGPMGPKTLCNACGVRYKS  289 (372)
Q Consensus       254 ~~r~C~~C~t~~TP~W--R~GP~G~~tLCNACGl~yk~  289 (372)
                      .++.|.+|++++.-+|  .-+|.-.+.||-.|-+||||
T Consensus       385 ~g~~CEsC~ttqs~qWYsWGppnmqcrLCasCWiyWKK  422 (693)
T KOG3554|consen  385 DGRACESCYTTQSLQWYSWGPPNMQCRLCASCWIYWKK  422 (693)
T ss_pred             CCCcccccccccccceeccCCCCccchhhHHHHHHHHH
Confidence            5789999999999999  55666667899999999998

>PRK12286 rpmF 50S ribosomal protein L32; Reviewed

Probab=86.10  E-value=0.56  Score=36.24  Aligned_cols=26  Identities=27%  Similarity=0.648  Sum_probs=20.7

Q ss_pred             CCCcccccCCCCCCCccccCCCCCcccchhhhhhh
Q 017390          253 GEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRY  287 (372)
Q Consensus       253 ~~~r~C~~C~t~~TP~WR~GP~G~~tLCNACGl~y  287 (372)
                      ...-.|.+||...-|         ..+|..||.|-
T Consensus        25 ~~l~~C~~CG~~~~~---------H~vC~~CG~Y~   50 (57)
T PRK12286         25 PGLVECPNCGEPKLP---------HRVCPSCGYYK   50 (57)
T ss_pred             CcceECCCCCCccCC---------eEECCCCCcCC
Confidence            466789999987765         78999999543

>COG5641 GAT1 GATA Zn-finger-containing transcription factor [Transcription]

Probab=81.95  E-value=0.85  Score=48.59  Aligned_cols=35  Identities=31%  Similarity=0.454  Sum_probs=29.2

Q ss_pred             CcccccCCC-CCCCccccCCCCCcccchhhhhhhhh
Q 017390          255 GRKCLHCAT-DKTPQWRTGPMGPKTLCNACGVRYKS  289 (372)
Q Consensus       255 ~r~C~~C~t-~~TP~WR~GP~G~~tLCNACGl~yk~  289 (372)
                      ...|.+|.+ +.||.||+...-.-++|||||++.+.
T Consensus       297 ~~~~s~~~~~~~tp~~~r~~~~~s~~~n~~~~~~~~  332 (498)
T COG5641         297 DKKRSTLTTSTATPLWRRTSDKSSFSCNASGSALKP  332 (498)
T ss_pred             hcCcccccccccCcccccccccccccccccccccCC
Confidence            557888887 67899988887778999999999984

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	372
2kae_A	71	GATA-type transcription factor; zinc finger, GATA-	6e-14
1gnf_A	46	Transcription factor GATA-1; zinc finger, transcri	9e-12
2vut_I	43	AREA, nitrogen regulatory protein AREA; transcript	7e-09
3dfx_A	63	Trans-acting T-cell-specific transcription factor	6e-08
4gat_A	66	Nitrogen regulatory protein AREA; DNA binding prot	8e-08

>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans} Length = 71

 Score = 65.3 bits (159), Expect = 6e-14
 Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 248 GDEGNGEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAS 300
           G   N +  +C +C+  +T +WR         CNAC +  +      + RP +
Sbjct: 1   GSHMNKKSFQCSNCSVTETIRWRNIRSKEGIQCNACFIYQR---KYNKTRPVT 50

>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A Length = 46

 Score = 58.6 bits (142), Expect = 9e-12
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 253 GEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYK 288
            E R+C++C    TP WR    G   LCNACG+ +K
Sbjct: 2   SEARECVNCGATATPLWRRDRTG-HYLCNACGLYHK 36

>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I* Length = 43

 Score = 50.2 bits (120), Expect = 7e-09
 Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 4/45 (8%)

Query: 256 RKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAS 300
             C +C T  TP WR  P G + LCNACG+  K   L    RP S
Sbjct: 2   TTCTNCFTQTTPLWRRNPEG-QPLCNACGLFLK---LHGVVRPLS 42

>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* Length = 63

 Score = 48.1 bits (114), Expect = 6e-08
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 4/49 (8%)

Query: 252 NGEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAS 300
              G  C +C T  T  WR    G   +CNACG+ YK   +    RP +
Sbjct: 4   RRAGTSCANCQTTTTTLWRRNANG-DPVCNACGLYYKLHNIN---RPLT 48

>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A* Length = 66

 Score = 47.8 bits (113), Expect = 8e-08
 Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 4/49 (8%)

Query: 252 NGEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAS 300
                 C +C T  TP WR  P G + LCNACG+  K   L    RP S
Sbjct: 6   QNGPTTCTNCFTQTTPLWRRNPEG-QPLCNACGLFLK---LHGVVRPLS 50

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	372
3dfx_A	63	Trans-acting T-cell-specific transcription factor	99.68
4gat_A	66	Nitrogen regulatory protein AREA; DNA binding prot	99.65
1gnf_A	46	Transcription factor GATA-1; zinc finger, transcri	99.58
2vut_I	43	AREA, nitrogen regulatory protein AREA; transcript	99.57
4hc9_A	115	Trans-acting T-cell-specific transcription factor;	99.54
2kae_A	71	GATA-type transcription factor; zinc finger, GATA-	99.51
4hc9_A	115	Trans-acting T-cell-specific transcription factor;	99.21

>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*

Probab=99.68  E-value=1.4e-17  Score=128.60  Aligned_cols=55  Identities=31%  Similarity=0.634  Sum_probs=47.6

Q ss_pred             CCcccccCCCCCCCccccCCCCCcccchhhhhhhhhCCCCCCCCCCCCCcccccccccc
Q 017390          254 EGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTKHSNS  312 (372)
Q Consensus       254 ~~r~C~~C~t~~TP~WR~GP~G~~tLCNACGl~yk~~rl~p~~RP~~~pt~~~~~~sn~  312 (372)
                      ....|.||+++.||+||+||.|+ +|||||||+|+++   ..+||+.+.+++|++|+++
T Consensus         6 ~~~~C~~C~tt~Tp~WR~gp~G~-~LCNACGl~~~~~---~~~RP~~~~~~~i~~R~Rk   60 (63)
T 3dfx_A            6 AGTSCANCQTTTTTLWRRNANGD-PVCNACGLYYKLH---NINRPLTMKKEGIQTRNRK   60 (63)
T ss_dssp             TTCCCTTTCCSCCSSCCCCTTSC-CCCHHHHHHHHHH---SSCCCGGGCCSSCCCCC--
T ss_pred             CCCcCCCcCCCCCCccCCCCCCC-chhhHHHHHHHHc---CCCCCcCcCCCccccccCC
Confidence            44689999999999999999996 9999999999964   4589999999999977654

>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*

Probab=99.65  E-value=2.6e-17  Score=128.04  Aligned_cols=57  Identities=39%  Similarity=0.674  Sum_probs=50.4

Q ss_pred             CCCcccccCCCCCCCccccCCCCCcccchhhhhhhhhCCCCCCCCCCCCCccccccccccc
Q 017390          253 GEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTKHSNSH  313 (372)
Q Consensus       253 ~~~r~C~~C~t~~TP~WR~GP~G~~tLCNACGl~yk~~rl~p~~RP~~~pt~~~~~~sn~~  313 (372)
                      +..+.|.||++++||+||+||.|. +|||||||||++   +...||+.+++.+|++++++.
T Consensus         7 ~~~~~C~~C~t~~Tp~WR~gp~G~-~LCNaCGl~~~~---~~~~RP~~~k~~~ik~R~R~~   63 (66)
T 4gat_A            7 NGPTTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKL---HGVVRPLSLKTDVIKKRNRNS   63 (66)
T ss_dssp             SSSCCCTTTCCCCCSSCEEETTTE-EECHHHHHHHHH---HCSCCCGGGCCSCCCCCCCSC
T ss_pred             CCCCCCCCCCCCCCCcCCcCCCCC-CccHHHHHHHHH---cCCCCchhhccccccccccCC
Confidence            456899999999999999999995 999999999994   566899999999999876653

>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A

Probab=99.58  E-value=7.9e-16  Score=112.14  Aligned_cols=43  Identities=42%  Similarity=0.862  Sum_probs=37.5

Q ss_pred             CCcccccCCCCCCCccccCCCCCcccchhhhhhhhhCCCCCCCCCCC
Q 017390          254 EGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAS  300 (372)
Q Consensus       254 ~~r~C~~C~t~~TP~WR~GP~G~~tLCNACGl~yk~~rl~p~~RP~~  300 (372)
                      +.+.|.||++++||+||+||.|+ +|||||||||++   +...||+.
T Consensus         3 ~~~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~---~~~~RP~~   45 (46)
T 1gnf_A            3 EARECVNCGATATPLWRRDRTGH-YLCNACGLYHKM---NGQNRPLI   45 (46)
T ss_dssp             CSCCCTTTCCCCCSSCBCCTTCC-CBCSHHHHHHHH---TCSCCCCC
T ss_pred             CCCCCCCcCCCCCCcCccCCCCC-ccchHHHHHHHH---cCCCCCCC
Confidence            56789999999999999999995 999999999995   45667764

>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*

Probab=99.57  E-value=5.6e-16  Score=111.45  Aligned_cols=42  Identities=45%  Similarity=0.855  Sum_probs=36.6

Q ss_pred             cccccCCCCCCCccccCCCCCcccchhhhhhhhhCCCCCCCCCCCC
Q 017390          256 RKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPASS  301 (372)
Q Consensus       256 r~C~~C~t~~TP~WR~GP~G~~tLCNACGl~yk~~rl~p~~RP~~~  301 (372)
                      +.|.+|++++||+||+||.|+ +|||||||||++   +...||+++
T Consensus         2 ~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~---~~~~RP~~l   43 (43)
T 2vut_I            2 TTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKL---HGVVRPLSL   43 (43)
T ss_dssp             CCCSSSCCCCCSCCEECTTSC-EECHHHHHHHHH---HSSCCCCCC
T ss_pred             CcCCccCCCCCCccccCCCCC-cccHHHHHHHHH---hCCCCCCCC
Confidence            579999999999999999996 999999999995   445677654

>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A

Probab=99.54  E-value=2.2e-15  Score=127.85  Aligned_cols=55  Identities=31%  Similarity=0.631  Sum_probs=48.5

Q ss_pred             CCCcccccCCCCCCCccccCCCCCcccchhhhhhhhhCCCCCCCCCCCCCccccccccc
Q 017390          253 GEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTKHSN  311 (372)
Q Consensus       253 ~~~r~C~~C~t~~TP~WR~GP~G~~tLCNACGl~yk~~rl~p~~RP~~~pt~~~~~~sn  311 (372)
                      .....|+||+++.||+||+||+| ++|||||||||++   +...||+.+++.+|+.|.+
T Consensus        57 ~~~~~C~~C~t~~tp~WRr~~~g-~~lCNaCgl~~~~---~~~~rp~~~~~~~i~~r~r  111 (115)
T 4hc9_A           57 RAGTSCANCQTTTTTLWRRNANG-DPVCNACGLYYKL---HNINRPLTMKKEGIQTRNR  111 (115)
T ss_dssp             CTTCCCTTTCCSCCSSCEECTTS-CEECHHHHHHHHH---HSSCCCGGGCCSSCCCCC-
T ss_pred             cccccCCCcCCCCcceeEECCCC-CCcchHHHHHHHH---hCCCCCccccccchhhccc
Confidence            35689999999999999999999 9999999999995   4566999999999987654

>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}

Probab=99.51  E-value=1.1e-15  Score=120.36  Aligned_cols=49  Identities=22%  Similarity=0.453  Sum_probs=38.6

Q ss_pred             CCCcccccCCCCCCCccccCCCCCcccchhhhhhhhhCCCCCCCCCCCCCcc
Q 017390          253 GEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPASSPTF  304 (372)
Q Consensus       253 ~~~r~C~~C~t~~TP~WR~GP~G~~tLCNACGl~yk~~rl~p~~RP~~~pt~  304 (372)
                      .....|.||+++.||+||+|+.+..+|||||||||++   +..+||+.+.+.
T Consensus         6 ~~~~~C~nC~tt~Tp~WRrg~~~~g~LCNACGl~~~~---~~~~RP~~~~~~   54 (71)
T 2kae_A            6 KKSFQCSNCSVTETIRWRNIRSKEGIQCNACFIYQRK---YNKTRPVTAVNK   54 (71)
T ss_dssp             --CCCCSSSCCSCCSSCCCCSSSSCCCSSHHHHHHHH---HHSCCCTHHHHH
T ss_pred             CCCCcCCccCCCCCCccccCCCCCCccchHHHHHHHH---hCCCCCcccchh
Confidence            3557899999999999999654445999999999995   456788876543

>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A

Probab=99.21  E-value=3.1e-12  Score=108.55  Aligned_cols=46  Identities=41%  Similarity=0.897  Sum_probs=37.7

Q ss_pred             CCCcccccCCCCCCCccccCCCCCcccchhhhhhhhhCCCCCCCCCCCCC
Q 017390          253 GEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPASSP  302 (372)
Q Consensus       253 ~~~r~C~~C~t~~TP~WR~GP~G~~tLCNACGl~yk~~rl~p~~RP~~~p  302 (372)
                      ...+.|.||+++.||+||+|+.| .+|||||||||+   ++...||+..+
T Consensus         3 ~~~~~C~~Cg~~~Tp~WRr~~~g-~~lCnaCgl~~K---l~G~nRP~~Kp   48 (115)
T 4hc9_A            3 HMGRECVNCGATSTPLWRRDGTG-HYLCNACGLYHK---MNGQNRPLIKP   48 (115)
T ss_dssp             ---CCCTTTCCSCCSSCEECTTS-CEECHHHHHHHH---HHSSCCCCSSC
T ss_pred             CCCCCCCCCCCccCCcceECCCC-CCcCcchhhhhh---hcccccccccc
Confidence            35689999999999999999999 899999999999   45566776543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	372
d1y0ja1	39	g.39.1.1 (A:200-238) Erythroid transcription facto	1e-13
d2vuti1	42	g.39.1.1 (I:671-712) Erythroid transcription facto	3e-10
d3gata_	66	g.39.1.1 (A:) Erythroid transcription factor GATA-	7e-10

>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 39

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.4 bits (152), Expect = 1e-13
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 254 EGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYK 288
           E R+C++C    TP WR    G   LCNACG+ +K
Sbjct: 1   EARECVNCGATATPLWRRDRTG-HYLCNACGLYHK 34

>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]} Length = 42

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Emericella nidulans [TaxId: 162425]

 Score = 52.9 bits (127), Expect = 3e-10
 Identities = 20/43 (46%), Positives = 23/43 (53%), Gaps = 4/43 (9%)

Query: 258 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAS 300
           C +C T  TP WR  P G + LCNACG+  K   L    RP S
Sbjct: 3   CTNCFTQTTPLWRRNPEG-QPLCNACGLFLK---LHGVVRPLS 41

>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 66

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 52.3 bits (125), Expect = 7e-10
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 7/70 (10%)

Query: 255 GRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTKHSNSHR 314
           G  C +C T  T  WR  PMG   +CNACG+ YK  ++    RP +     +      +R
Sbjct: 4   GTVCSNCQTSTTTLWRRSPMG-DPVCNACGLYYKLHQV---NRPLTMRKDGIQTR---NR 56

Query: 315 KVLELRRQKE 324
           KV    +++ 
Sbjct: 57  KVSSKGKKRR 66

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	372
d2vuti1	42	Erythroid transcription factor GATA-1 {Emericella	99.67
d3gata_	66	Erythroid transcription factor GATA-1 {Chicken (Ga	99.64
d1y0ja1	39	Erythroid transcription factor GATA-1 {Mouse (Mus	99.6

>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Emericella nidulans [TaxId: 162425]

Probab=99.67  E-value=4.6e-18  Score=120.16  Aligned_cols=41  Identities=49%  Similarity=0.941  Sum_probs=38.1

Q ss_pred             ccccCCCCCCCccccCCCCCcccchhhhhhhhhCCCCCCCCCCCC
Q 017390          257 KCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPASS  301 (372)
Q Consensus       257 ~C~~C~t~~TP~WR~GP~G~~tLCNACGl~yk~~rl~p~~RP~~~  301 (372)
                      .|.||++++||+||+||.| ++|||||||||+   ++..+||++|
T Consensus         2 ~C~nC~tt~Tp~WRr~~~G-~~lCNACGl~~k---~~g~~RP~sl   42 (42)
T d2vuti1           2 TCTNCFTQTTPLWRRNPEG-QPLCNACGLFLK---LHGVVRPLSL   42 (42)
T ss_dssp             CCSSSCCCCCSCCEECTTS-CEECHHHHHHHH---HHSSCCCCCC
T ss_pred             cCCCCCCCCCccceeCCCC-CCchhhhhHHHH---HcCCCCCCCC
Confidence            5999999999999999999 899999999999   6788899875

>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.64  E-value=4.9e-18  Score=130.36  Aligned_cols=55  Identities=35%  Similarity=0.699  Sum_probs=48.5

Q ss_pred             CcccccCCCCCCCccccCCCCCcccchhhhhhhhhCCCCCCCCCCCCCccccccccccc
Q 017390          255 GRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTKHSNSH  313 (372)
Q Consensus       255 ~r~C~~C~t~~TP~WR~GP~G~~tLCNACGl~yk~~rl~p~~RP~~~pt~~~~~~sn~~  313 (372)
                      +..|.||+++.||+||+||.| ++|||||||||++   +...||+.+.+.+|+.+.++.
T Consensus         4 g~~C~nCgt~~Tp~WRr~~~G-~~lCNACGl~~~~---~~~~RP~~~~~~~i~~r~r~~   58 (66)
T d3gata_           4 GTVCSNCQTSTTTLWRRSPMG-DPVCNACGLYYKL---HQVNRPLTMRKDGIQTRNRKV   58 (66)
T ss_dssp             TCCCTTTCCCCCSSEEECTTS-CEEEHHHHHHHHH---HCSCCCGGGCCSSCCCCSCCC
T ss_pred             CCCCCCCCCCCCcccccCCCC-CcccchhHHHHHH---hCCcCCccccccccccccCCC
Confidence            468999999999999999999 8999999999994   567899999999988776543

>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=1.1e-16  Score=111.48  Aligned_cols=36  Identities=44%  Similarity=0.995  Sum_probs=33.1

Q ss_pred             CCcccccCCCCCCCccccCCCCCcccchhhhhhhhhC
Q 017390          254 EGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSG  290 (372)
Q Consensus       254 ~~r~C~~C~t~~TP~WR~GP~G~~tLCNACGl~yk~~  290 (372)
                      +.++|.||++++||+||+||.| ++|||||||||+..
T Consensus         1 e~r~C~~Cgtt~Tp~WR~gp~G-~~LCNACGl~~r~~   36 (39)
T d1y0ja1           1 EARECVNCGATATPLWRRDRTG-HYLCNACGLYHKMN   36 (39)
T ss_dssp             CCCCCSSSCCCCCSCCEECTTS-CEECSSHHHHHHHS
T ss_pred             CcCCCCCCCCCCCcccccCCCC-CEeeHHhHHHHHHh
Confidence            3578999999999999999999 79999999999953