Citrus Sinensis ID: 017428
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 371 | 2.2.26 [Sep-21-2011] | |||||||
| Q6ZIK0 | 362 | Probable tocopherol O-met | yes | no | 0.738 | 0.756 | 0.715 | 1e-115 | |
| Q9ZSK1 | 348 | Tocopherol O-methyltransf | yes | no | 0.679 | 0.724 | 0.733 | 1e-110 | |
| Q8KZ94 | 283 | Demethylrebeccamycin-D-gl | N/A | no | 0.490 | 0.643 | 0.367 | 2e-26 | |
| Q9KJ20 | 565 | Glycine/sarcosine/dimethy | N/A | no | 0.560 | 0.368 | 0.290 | 5e-20 | |
| Q9P3R1 | 379 | Sterol 24-C-methyltransfe | N/A | no | 0.695 | 0.680 | 0.245 | 2e-18 | |
| Q96WX4 | 377 | Sterol 24-C-methyltransfe | N/A | no | 0.622 | 0.612 | 0.273 | 7e-18 | |
| O14321 | 378 | Sterol 24-C-methyltransfe | yes | no | 0.582 | 0.571 | 0.270 | 1e-16 | |
| Q6C2D9 | 381 | Sterol 24-C-methyltransfe | yes | no | 0.582 | 0.566 | 0.277 | 2e-16 | |
| Q54I98 | 354 | Probable cycloartenol-C-2 | no | no | 0.649 | 0.680 | 0.251 | 4e-16 | |
| Q9KJ21 | 279 | Sarcosine/dimethylglycine | N/A | no | 0.563 | 0.749 | 0.288 | 4e-16 |
| >sp|Q6ZIK0|GTOMC_ORYSJ Probable tocopherol O-methyltransferase, chloroplastic OS=Oryza sativa subsp. japonica GN=VTE4 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 416 bits (1070), Expect = e-115, Method: Compositional matrix adjust.
Identities = 196/274 (71%), Positives = 226/274 (82%)
Query: 95 LKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSED 154
LKEGIA YDESS +WE IWG+HMHHGFY+ + S+SDHR AQ+RMIEE+L FA V +D
Sbjct: 74 LKEGIAGLYDESSGVWESIWGEHMHHGFYDAGEAASMSDHRRAQIRMIEESLAFAAVPDD 133
Query: 155 PTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQV 214
K+PK+VVDVGCGIGGSSRYLA K+GA+C GITLSPVQA+R NALAA +GL+DKVSFQV
Sbjct: 134 AEKKPKSVVDVGCGIGGSSRYLANKYGAQCYGITLSPVQAERGNALAAEQGLSDKVSFQV 193
Query: 215 GDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEE 274
GDAL+QPFPDGQFDLVWSMESGEHMPDK +FVSELARV AP IIIVTWCHR+L PSEE
Sbjct: 194 GDALEQPFPDGQFDLVWSMESGEHMPDKRQFVSELARVAAPGARIIIVTWCHRNLEPSEE 253
Query: 275 SLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPAVIHSA 334
SL+P E LLK+ICDAYYLP WCS +DYVK+ +SLSLEDI+ DWS+NVAPFWPAVI SA
Sbjct: 254 SLKPDELNLLKRICDAYYLPDWCSPSDYVKIAESLSLEDIRTADWSENVAPFWPAVIKSA 313
Query: 335 LTWKGFTSLLRTEIFTGRKVLLCNHIEEDFPNAL 368
LTWKG TSLLR+ T R ++ + E + L
Sbjct: 314 LTWKGLTSLLRSGWKTIRGAMVMPLMIEGYKKGL 347
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Involved in the synthesis of tocopherol (vitamin E). Methylates gamma- and delta-tocopherol to form beta- and alpha-tocopherol, respectively. Oryza sativa subsp. japonica (taxid: 39947) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 9EC: 5 |
| >sp|Q9ZSK1|GTOMC_ARATH Tocopherol O-methyltransferase, chloroplastic OS=Arabidopsis thaliana GN=VTE4 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 399 bits (1026), Expect = e-110, Method: Compositional matrix adjust.
Identities = 187/255 (73%), Positives = 216/255 (84%), Gaps = 3/255 (1%)
Query: 95 LKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSD--HRAAQVRMIEETLRFAGVS 152
L++GIAEFY+E+S LWE+IWGDHMHHGFY+PDSSV +SD H+ AQ+RMIEE+LRFAGV+
Sbjct: 60 LRKGIAEFYNETSGLWEEIWGDHMHHGFYDPDSSVQLSDSGHKEAQIRMIEESLRFAGVT 119
Query: 153 EDPTKRPKN-VVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVS 211
++ ++ VVDVGCGIGGSSRYLA KFGA+C GITLSPVQA+RAN LAAA+ LA K S
Sbjct: 120 DEEEEKKIKKVVDVGCGIGGSSRYLASKFGAECIGITLSPVQAKRANDLAAAQSLAHKAS 179
Query: 212 FQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAP 271
FQV DAL QPF DG+FDLVWSMESGEHMPDK+KFV EL RV AP G IIIVTWCHR+L+
Sbjct: 180 FQVADALDQPFEDGKFDLVWSMESGEHMPDKAKFVKELVRVAAPGGRIIIVTWCHRNLSA 239
Query: 272 SEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPAVI 331
EE+LQPWEQ +L KIC +YLPAWCST DYV LLQS SL+DIK DWS+NVAPFWPAVI
Sbjct: 240 GEEALQPWEQNILDKICKTFYLPAWCSTDDYVNLLQSHSLQDIKCADWSENVAPFWPAVI 299
Query: 332 HSALTWKGFTSLLRT 346
+ALTWKG SLLR+
Sbjct: 300 RTALTWKGLVSLLRS 314
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Involved in the synthesis of tocopherol (vitamin E). Methylates gamma- and delta-tocopherol to form beta- and alpha-tocopherol, respectively. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 5 |
| >sp|Q8KZ94|REBMT_NOCAE Demethylrebeccamycin-D-glucose O-methyltransferase OS=Lechevalieria aerocolonigenes GN=rebM PE=1 SV=1 | Back alignment and function description |
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Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/193 (36%), Positives = 106/193 (54%), Gaps = 11/193 (5%)
Query: 82 TSTTTMSDAAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYE-PDSSVSVSDHRAAQVR 140
T + + A A E + + YD+ + + IWG+++H G++E + VSV D A R
Sbjct: 2 TESKSEGTAVAAPTPEEVRQMYDDFTDPFARIWGENLHFGYWEDAGADVSVDD---ATDR 58
Query: 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANAL 200
+ +E + V + V+DVGCGIG + LA + GI++S Q +ANA
Sbjct: 59 LTDEMIALLDV-----RSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANAR 113
Query: 201 AAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTII 260
A A GLA++V+F DA+ PF D FD VW++ES HMPD+ + + E+ARV P GT+
Sbjct: 114 ATAAGLANRVTFSYADAMDLPFEDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVA 173
Query: 261 IVTWCHRDLAPSE 273
I + LAP E
Sbjct: 174 IADFVL--LAPVE 184
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Glycosyl O-methyltransferase that catalyzes the final step in the biosynthesis of rebeccamycin, an indolocarbazole alkaloid that inhibits topoisomerase 1. Has broad substrate specificity and functions as glycosyl O-methyltransferase on a number of rebeccamycin analogs. Lechevalieria aerocolonigenes (taxid: 68170) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9KJ20|GSDMT_ACTHA Glycine/sarcosine/dimethylglycine N-methyltransferase OS=Actinopolyspora halophila PE=1 SV=1 | Back alignment and function description |
|---|
Score = 99.0 bits (245), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 109/231 (47%), Gaps = 23/231 (9%)
Query: 104 DESSSLWEDIWG-DHMHHGFYE-PDSSVSVSDHRAAQVRMIEETLRFAG-VSEDPTKRPK 160
+++ + + +WG + +H G Y+ P ++ + R Q R AG V P R
Sbjct: 308 EDADNFYYHVWGGNDIHVGLYQTPQEDIATASERTVQ--------RMAGKVDISPETR-- 357
Query: 161 NVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220
++D+G G GG++RYLA+ +G + LS V+ QR + A GL + G
Sbjct: 358 -ILDLGAGYGGAARYLARTYGCHVTCLNLSEVENQRNREITRAEGLEHLIEVTDGSFEDL 416
Query: 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWE 280
P+ D FD+VWS +S H D+S+ + E+ RV P G+++ D A E
Sbjct: 417 PYQDNAFDVVWSQDSFLHSGDRSRVMEEVTRVLKPKGSVLFTDPMASDSAKKNE------ 470
Query: 281 QELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPAVI 331
L I D +L + S Y K L L L++I+ ED S+ + + V+
Sbjct: 471 ---LGPILDRLHLDSLGSPGFYRKELTRLGLQNIEFEDLSEYLPVHYGRVL 518
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Catalyzes the methylation of glycine, sarcosine and dimethylglycine to sarcosine, dimethylglycine and betaine, respectively, with S-adenosylmethionine (AdoMet) acting as the methyl donor. Actinopolyspora halophila (taxid: 1850) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 EC: 7 |
| >sp|Q9P3R1|ERG6_NEUCR Sterol 24-C-methyltransferase erg-4 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=erg-4 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/289 (24%), Positives = 129/289 (44%), Gaps = 31/289 (10%)
Query: 79 SSTTSTTTMSDAAAR--ELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSV--SVSDH 134
+ T T +D AR E +Y+ ++ ++E WG H Y P S +++ H
Sbjct: 57 NKTAEAETQADREARTKEYATLTRHYYNLATDIYEYGWGQCFHFCRYSPGESFYQAIARH 116
Query: 135 R---AAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSP 191
AAQ+ + K+ V+DVGCG+GG +R +AK A G+ +
Sbjct: 117 EHYLAAQIGI---------------KKDMKVLDVGCGVGGPAREIAKFTDAHITGLNNND 161
Query: 192 VQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELAR 251
Q RA A GL+ ++ F GD +Q FPD FD V+++E+ H P E+ R
Sbjct: 162 YQIDRATHYAVRDGLSGQLKFVKGDFMQMSFPDNSFDAVYAIEATVHAPKLEGVYGEIYR 221
Query: 252 VTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSL 311
V P GT + W D ++++ + L ++ + + + ++ + ++++
Sbjct: 222 VLKPGGTFGVYEWLMTD-NYDNDNVEHRDIRLAIEVGNG--ISNMVTISEGLAAMKNVGF 278
Query: 312 EDIKAEDWSQNVAP---FWPAV--IHSALTWKGFTSLLRTEIFTGRKVL 355
E + ED + P +WP + ++ F +++R T R++L
Sbjct: 279 ELVHHEDLADRNDPMPWYWPIAGELRYMQSYLDFFTVVRM-THTARRIL 326
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Catalyzes the methyl transfer from S-adenosyl-methionine to the C-24 of zymosterol to form fecosterol. Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 1 |
| >sp|Q96WX4|ERG6_PNECA Sterol 24-C-methyltransferase OS=Pneumocystis carinii GN=erg6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 91.7 bits (226), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 110/249 (44%), Gaps = 18/249 (7%)
Query: 102 FYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKN 161
+Y+ + +E W H + D S S + R + AG+ E T
Sbjct: 80 YYNLVTDFYEYGWSTSFHFCRFAKDESFSQAIARHEHYIALH-----AGIREGET----- 129
Query: 162 VVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP 221
V+DVGCG+GG + ++ GA G+ + Q QRA + +GL+DK+ F GD +Q P
Sbjct: 130 VLDVGCGVGGPACQISVFTGANIVGLNNNDYQIQRAKYYSEKKGLSDKLKFIKGDFMQMP 189
Query: 222 FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQ 281
FP+ FD ++S+E+ H P SE+ RV P G W L +E+ P Q
Sbjct: 190 FPENSFDKIYSIEATIHAPSLEGVYSEIYRVLKPGGLYASYEWVM--LNKYDEN-DPEHQ 246
Query: 282 ELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPF-WPAVIHSAL----T 336
+++ I +P + L + E I +E+ S +P W + L +
Sbjct: 247 QIVYGIEIGDSIPKISKIGEAEAALIKVGFEIIHSEELSTKNSPLPWYYYLDGDLRKVRS 306
Query: 337 WKGFTSLLR 345
++ F S+ R
Sbjct: 307 FRDFISIAR 315
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Catalyzes the methyl transfer from S-adenosyl-methionine to the C-24 of zymosterol to form fecosterol. Pneumocystis carinii (taxid: 4754) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 1 |
| >sp|O14321|ERG6_SCHPO Sterol 24-C-methyltransferase erg6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=erg6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 103/237 (43%), Gaps = 21/237 (8%)
Query: 96 KEGIAEFYDESSSLWEDIWGDHMHHG-FYEPDS---SVSVSDHRAAQVRMIEETLRFAGV 151
K + +YD ++ L+E W H FY+ ++ S++ +H A RM G+
Sbjct: 72 KSVVNSYYDLATDLYEYGWSQSFHFSRFYKGEAFAQSIARHEHYLA-YRM--------GI 122
Query: 152 SEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVS 211
P R V+DVGCG+GG +R + + G G+ + Q R N A R L K
Sbjct: 123 K--PGSR---VLDVGCGVGGPAREITEFTGCNLVGLNNNDYQISRCNNYAVKRNLDKKQV 177
Query: 212 FQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAP 271
F GD + PF D FD V+++E+ H P E+ RV P G + W D
Sbjct: 178 FVKGDFMHMPFEDNTFDYVYAIEATVHAPSLEGVYGEIFRVLKPGGVFGVYEWVMSD--- 234
Query: 272 SEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWP 328
+S P +E+ I +P D V+ ++ + ++ +D + + P P
Sbjct: 235 DYDSSIPKHREIAYNIEVGDGIPQMVRKCDAVEAIKKVGFNLLEEDDLTDHDNPDLP 291
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Catalyzes the methyl transfer from S-adenosyl-methionine to the C-24 of zymosterol to form fecosterol. Involved in the biosynthesis or ergosterol which is important for plasma membrane structure and function and for localization of plasma membrane proteins. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 1 |
| >sp|Q6C2D9|ERG6_YARLI Sterol 24-C-methyltransferase OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=ERG6 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 105/238 (44%), Gaps = 22/238 (9%)
Query: 102 FYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKN 161
+Y+ + +E WG H Y + R A R E L + + P +
Sbjct: 82 YYNLVTDFYEYGWGSSFHFSRYYKGEAF-----RQATARH-EHYLAYK-MGIQPGMK--- 131
Query: 162 VVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP 221
V+DVGCG+GG +R +A+ GA G+ + Q +R + +G D+V++ GD +Q
Sbjct: 132 VLDVGCGVGGPAREIARFTGANIVGLNNNDYQVERGTHYSEVQGFGDQVTYVKGDFMQMD 191
Query: 222 FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQ 281
FPD FD V+++E+ H P SE+ RV P G + W D +ES P +
Sbjct: 192 FPDNSFDAVYAIEATVHAPVLEGVYSEIFRVLKPGGVFGVYEWVMTD--EYDES-NPEHR 248
Query: 282 ELLKKICDAYYLPAWCSTADYVKLLQSLSL-----EDIKAED----WSQNVAPFWPAV 330
++ I +P VK L+++ ED+ A+D W +A W V
Sbjct: 249 DICYGIEKGDGIPKMYKREVAVKALENVGFDIEYQEDLAADDAEVPWYYPLAGEWKYV 306
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Catalyzes the methyl transfer from S-adenosyl-methionine to the C-24 of zymosterol to form fecosterol. Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 1 |
| >sp|Q54I98|SMT1_DICDI Probable cycloartenol-C-24-methyltransferase 1 OS=Dictyostelium discoideum GN=smt1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 85.9 bits (211), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 102/254 (40%), Gaps = 13/254 (5%)
Query: 99 IAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKR 158
+ FYD ++ +E WG H S S R ++ M + F G+
Sbjct: 62 VNTFYDLATDFYEFGWGQSFHFATRHKYESFEASIARH-EMYMAHQLGLFPGMK------ 114
Query: 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218
V+D+GCG+GG R +A+ GA G+ + Q QR L + GL+ SF D +
Sbjct: 115 ---VIDIGCGVGGPMRTIARFSGANVVGLNNNEYQIQRGKRLNESAGLSHLCSFIKADFM 171
Query: 219 QQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQP 278
P D +D + +E+ H PD E+ R+ P G W + E+ P
Sbjct: 172 HVPVEDNTYDCAYQIEATCHAPDLVGLYKEVFRIVKPGGLFGGYEWIMTNKFNPED---P 228
Query: 279 WEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPAVIHSALTWK 338
E + K+I LP A+ + ++ E I A D ++ W + S ++
Sbjct: 229 VEVNIKKQIELGNGLPDLVKPAEIINAAKAAGFEVITAFDVAETSELPWYLPLSSGVSIT 288
Query: 339 GFTSLLRTEIFTGR 352
GF TG+
Sbjct: 289 GFLHTGVGRYLTGK 302
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Catalyzes the methyl transfer from S-adenosyl-methionine to the C-24 of cycloartenol to form 24-methylene cycloartenol. Dictyostelium discoideum (taxid: 44689) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 1 |
| >sp|Q9KJ21|SDMT_ECTHL Sarcosine/dimethylglycine N-methyltransferase OS=Ectothiorhodospira halochloris PE=1 SV=1 | Back alignment and function description |
|---|
Score = 85.9 bits (211), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 102/229 (44%), Gaps = 20/229 (8%)
Query: 104 DESSSLWEDIWG-DHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNV 162
+++ + + IWG + +H G Y D R RM + + S V
Sbjct: 20 EDADNFYAIIWGGEDIHIGLYNDDEEPIADASRRTVERMSSLSRQLGPDS--------YV 71
Query: 163 VDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P 221
+D+G G GGS+RYLA K+G K + LS + +R + +G+ D + V A + P
Sbjct: 72 LDMGAGYGGSARYLAHKYGCKVAALNLSERENERDRQMNKEQGV-DHLIEVVDAAFEDVP 130
Query: 222 FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQ 281
+ DG FDLVWS +S H PD+ + + E +RV G I D P E +QP
Sbjct: 131 YDDGVFDLVWSQDSFLHSPDRERVLREASRVLRSGGEFIFTDPMQADDCP-EGVIQP--- 186
Query: 282 ELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPAV 330
I D +L + Y + L+ L E+I ED + + + V
Sbjct: 187 -----ILDRIHLETMGTPNFYRQTLRDLGFEEITFEDHTHQLPRHYGRV 230
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Catalyzes the methylation of sarcosine and dimethylglycine to dimethylglycine and betaine, respectively, with S-adenosylmethionine (AdoMet) acting as the methyl donor. It has strict specificity for sarcosine and dimethylglycine as the methyl group acceptors. Ectothiorhodospira halochloris (taxid: 1052) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 EC: 7 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 371 | ||||||
| 91694293 | 344 | gamma-tocopherol methyltransferase [Goss | 0.738 | 0.796 | 0.758 | 1e-126 | |
| 66732623 | 358 | gamma-tocopherol methyltransferase [Lotu | 0.878 | 0.910 | 0.667 | 1e-125 | |
| 224126185 | 293 | predicted protein [Populus trichocarpa] | 0.743 | 0.941 | 0.766 | 1e-123 | |
| 350538087 | 362 | gamma-tocopherol methyltransferase [Sola | 0.776 | 0.795 | 0.722 | 1e-122 | |
| 225454678 | 345 | PREDICTED: probable tocopherol O-methylt | 0.808 | 0.869 | 0.709 | 1e-122 | |
| 91694287 | 368 | gamma-tocopherol methyltransferase [Sola | 0.814 | 0.820 | 0.671 | 1e-122 | |
| 359807465 | 302 | tocopherol O-methyltransferase, chloropl | 0.706 | 0.867 | 0.783 | 1e-121 | |
| 318068176 | 368 | gamma-tocopherol methyltransferase [Sola | 0.814 | 0.820 | 0.682 | 1e-121 | |
| 325516264 | 361 | gamma-tocopherol methyltransferase [Sola | 0.776 | 0.797 | 0.718 | 1e-121 | |
| 342330690 | 302 | gamma-tocopherol methyltransferase [Glyc | 0.706 | 0.867 | 0.779 | 1e-121 |
| >gi|91694293|gb|ABE41798.1| gamma-tocopherol methyltransferase [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust.
Identities = 214/282 (75%), Positives = 244/282 (86%), Gaps = 8/282 (2%)
Query: 75 ITRASSTTSTTTMSDAAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDH 134
+ A+S+ STTT L+EGIAEFYD+SS +WEDIWGDHMHHG+Y+PDS+VS SDH
Sbjct: 47 VKAAASSLSTTT--------LQEGIAEFYDQSSGIWEDIWGDHMHHGYYDPDSNVSGSDH 98
Query: 135 RAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQA 194
AAQ+RMIEE+LRFAG++EDP +PK +VDVGCGIGGSSRYLA+K+GAKCQGITLSPVQA
Sbjct: 99 PAAQIRMIEESLRFAGITEDPANKPKTIVDVGCGIGGSSRYLARKYGAKCQGITLSPVQA 158
Query: 195 QRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTA 254
RANALA +GLADKVSFQV DAL QPFPD QFDLVWSMESGEHMPDK KFV ELARV A
Sbjct: 159 GRANALAKDQGLADKVSFQVADALNQPFPDDQFDLVWSMESGEHMPDKPKFVKELARVAA 218
Query: 255 PAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDI 314
P GTIIIVTWCHRDL PSEE LQPWE++LL +IC+AYYLP WCST+DYVKLLQSLSL+DI
Sbjct: 219 PGGTIIIVTWCHRDLGPSEEDLQPWEKKLLNRICNAYYLPEWCSTSDYVKLLQSLSLQDI 278
Query: 315 KAEDWSQNVAPFWPAVIHSALTWKGFTSLLRTEIFTGRKVLL 356
KA DW++NVAPFWPAVI SALTWKGFTSLLR+ + T + L+
Sbjct: 279 KAADWTENVAPFWPAVIRSALTWKGFTSLLRSGLKTIKGALV 320
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|66732623|gb|AAY52459.1| gamma-tocopherol methyltransferase [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust.
Identities = 227/340 (66%), Positives = 256/340 (75%), Gaps = 14/340 (4%)
Query: 43 ACLRPSLLPAPPPAP----------TWRSSLLFGVSSFSRKLITRASSTTSTTTMSDAAA 92
A + S+ P PP T R + FS + TR S T + A
Sbjct: 2 ATMMMSIFPPPPSVASLFILSHCTHTIRVQSTTQFTGFSIRTRTRDCSRILLTEEREMAV 61
Query: 93 RE----LKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRF 148
E L+ GIAEFYDESS LWED+WGDHMHHGFYE D +VSVSDHR AQ+RMIEE+LRF
Sbjct: 62 MEEKKLLQTGIAEFYDESSGLWEDMWGDHMHHGFYEQDVTVSVSDHRVAQIRMIEESLRF 121
Query: 149 AGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLAD 208
A +SEDP K+P+++VDVGCGIGGSSRYLAKKF AK GITLSPVQAQRANALAA++GLAD
Sbjct: 122 AALSEDPAKKPESIVDVGCGIGGSSRYLAKKFQAKSVGITLSPVQAQRANALAASQGLAD 181
Query: 209 KVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRD 268
KVSFQV DAL+QPFPDGQFDLVWSMESGEHMPDK KFV ELARV AP GTIIIVTWCHRD
Sbjct: 182 KVSFQVADALEQPFPDGQFDLVWSMESGEHMPDKPKFVGELARVAAPGGTIIIVTWCHRD 241
Query: 269 LAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWP 328
L P+EESLQPWEQ LLK+ICDA+YLPAWCSTADYVKLL+S SL+DIK+ DWS VAPFWP
Sbjct: 242 LGPAEESLQPWEQNLLKRICDAFYLPAWCSTADYVKLLESHSLQDIKSADWSPFVAPFWP 301
Query: 329 AVIHSALTWKGFTSLLRTEIFTGRKVLLCNHIEEDFPNAL 368
AVI SA TWKG TSLLR+ + T + L + E F +
Sbjct: 302 AVIRSAFTWKGLTSLLRSGMKTIKGALAMPLMIEGFKKGV 341
|
Source: Lotus japonicus Species: Lotus japonicus Genus: Lotus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224126185|ref|XP_002319777.1| predicted protein [Populus trichocarpa] gi|222858153|gb|EEE95700.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 213/278 (76%), Positives = 232/278 (83%), Gaps = 2/278 (0%)
Query: 93 RELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVS--DHRAAQVRMIEETLRFAG 150
+ELK+GIAE YDESS +WEDIWGDHMHHGFY PD VS S DHRAAQ+RM++E LRFAG
Sbjct: 4 QELKQGIAELYDESSGVWEDIWGDHMHHGFYNPDDQVSGSGSDHRAAQIRMMQEALRFAG 63
Query: 151 VSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKV 210
+SEDP K PK VVDVGCGIGGSSRY+A+KFGAKCQGITLSP QAQRANALA GLADKV
Sbjct: 64 ISEDPEKGPKTVVDVGCGIGGSSRYIARKFGAKCQGITLSPFQAQRANALAETEGLADKV 123
Query: 211 SFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLA 270
SFQV DAL+QPFPDGQFDLVWSMESGEHMPDK KFV ELARV AP TI+IVTWCHR L
Sbjct: 124 SFQVADALEQPFPDGQFDLVWSMESGEHMPDKRKFVGELARVAAPGATIVIVTWCHRVLG 183
Query: 271 PSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPAV 330
PSEESLQPWE + LKKICDAYYLP WCSTADYV LL+SLSL+DIK DWSQ VAPFWPAV
Sbjct: 184 PSEESLQPWEMKHLKKICDAYYLPDWCSTADYVNLLESLSLQDIKTADWSQYVAPFWPAV 243
Query: 331 IHSALTWKGFTSLLRTEIFTGRKVLLCNHIEEDFPNAL 368
I SALTWKG TSLLR+ + T R L+ + E + L
Sbjct: 244 IRSALTWKGLTSLLRSGMKTIRGALVMPLMIEGYKKGL 281
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|350538087|ref|NP_001233814.1| gamma-tocopherol methyltransferase [Solanum lycopersicum] gi|91694285|gb|ABE41794.1| gamma-tocopherol methyltransferase [Solanum lycopersicum] | Back alignment and taxonomy information |
|---|
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 208/288 (72%), Positives = 240/288 (83%)
Query: 81 TTSTTTMSDAAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVR 140
++S+ + +ELK+GIA+ YDESS +WEDIWGDHMHHG+YEP SSV +SDHRAAQ+R
Sbjct: 63 SSSSVEVGIQNQQELKKGIADLYDESSGIWEDIWGDHMHHGYYEPKSSVELSDHRAAQIR 122
Query: 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANAL 200
MIE+ L FA +SEDP K+P ++VDVGCGIGGSSRYLAKK+GA +GITLSPVQA+RA AL
Sbjct: 123 MIEQALSFAAISEDPAKKPTSIVDVGCGIGGSSRYLAKKYGATAKGITLSPVQAERAQAL 182
Query: 201 AAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTII 260
A A+GL DKVSFQV DAL QPFPDGQFDLVWSMESGEHMP+K KFV ELARV AP GTII
Sbjct: 183 ADAQGLGDKVSFQVADALNQPFPDGQFDLVWSMESGEHMPNKEKFVGELARVAAPGGTII 242
Query: 261 IVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWS 320
+VTWCHRDL+PSEESL P E+ELL KIC A+YLPAWCSTADYVKLLQS SL+DIKAEDWS
Sbjct: 243 LVTWCHRDLSPSEESLTPEEKELLNKICKAFYLPAWCSTADYVKLLQSNSLQDIKAEDWS 302
Query: 321 QNVAPFWPAVIHSALTWKGFTSLLRTEIFTGRKVLLCNHIEEDFPNAL 368
+NVAPFWPAVI SALTWKGFTS+LR+ T + L + E + L
Sbjct: 303 ENVAPFWPAVIKSALTWKGFTSVLRSGWKTIKAALAMPLMIEGYKKGL 350
|
Source: Solanum lycopersicum Species: Solanum lycopersicum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225454678|ref|XP_002269749.1| PREDICTED: probable tocopherol O-methyltransferase, chloroplastic [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust.
Identities = 222/313 (70%), Positives = 250/313 (79%), Gaps = 13/313 (4%)
Query: 47 PSLLPAPP---PAPTWRSSLLFGVSSFSRKLITRASSTTSTTTMSDAAARELKEGIAEFY 103
P LP+PP P P + SR+ ++ ST + DA+ LK+GIAE Y
Sbjct: 19 PQRLPSPPHVWPRPA-------VTAPTSRRFARLTAAAISTMSPEDAS---LKKGIAELY 68
Query: 104 DESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVV 163
D+SS LWEDIWGDHMHHGFYEPDS+ S +DHR AQ+RMIEE+LRFAGVSE+ KRPK VV
Sbjct: 69 DQSSGLWEDIWGDHMHHGFYEPDSAASDADHRFAQIRMIEESLRFAGVSEEGEKRPKRVV 128
Query: 164 DVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP 223
DVGCGIGGSSRYLAKK+GA CQGITLSP+QAQRA LAA++GLADKVSFQV DAL QPFP
Sbjct: 129 DVGCGIGGSSRYLAKKYGASCQGITLSPLQAQRAQTLAASQGLADKVSFQVADALDQPFP 188
Query: 224 DGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQEL 283
DGQFDLVWSMESGEHMPDK KFVSELARV AP GTII+VTWCHRDL+PSEESL+P E+ L
Sbjct: 189 DGQFDLVWSMESGEHMPDKKKFVSELARVVAPGGTIILVTWCHRDLSPSEESLKPEEKAL 248
Query: 284 LKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPAVIHSALTWKGFTSL 343
L KIC AYYLP WCST DYVKLL+SLSL+DIKA DWS+ VAPFWPAVI SALT+KGF SL
Sbjct: 249 LDKICSAYYLPDWCSTTDYVKLLESLSLQDIKAADWSEYVAPFWPAVIRSALTFKGFISL 308
Query: 344 LRTEIFTGRKVLL 356
LR+ T R L+
Sbjct: 309 LRSGWKTIRGALV 321
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|91694287|gb|ABE41795.1| gamma-tocopherol methyltransferase [Solanum tuberosum] | Back alignment and taxonomy information |
|---|
Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust.
Identities = 213/317 (67%), Positives = 250/317 (78%), Gaps = 15/317 (4%)
Query: 67 VSSFSRKLITRASSTT-----STTTMSDAAA----------RELKEGIAEFYDESSSLWE 111
+ +++R+ I SS + S T M+ ++ +ELK+GIA+ YDESS +WE
Sbjct: 40 IQNYTRRRIITCSSNSRRRMASVTAMNAGSSSSVEVGIQNQQELKKGIADLYDESSGIWE 99
Query: 112 DIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGG 171
DIWGDHMHHG+YEP SSV +SDHRAAQ+RMIE+ L FA +SEDP K+P ++VDVGCGIGG
Sbjct: 100 DIWGDHMHHGYYEPQSSVELSDHRAAQIRMIEKALSFAAISEDPAKKPTSIVDVGCGIGG 159
Query: 172 SSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVW 231
SSRYLAKK+GA +GITLSPVQA+RA ALA A+GL DKVSFQV DAL QPFPDGQFDLVW
Sbjct: 160 SSRYLAKKYGATAKGITLSPVQAERAQALADAQGLGDKVSFQVADALNQPFPDGQFDLVW 219
Query: 232 SMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAY 291
SMESGEHMP+K KFV ELARV AP GTII+VTWCHRDL+PSEESL P E+ELL KIC A+
Sbjct: 220 SMESGEHMPNKEKFVGELARVAAPGGTIILVTWCHRDLSPSEESLTPEEKELLNKICKAF 279
Query: 292 YLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPAVIHSALTWKGFTSLLRTEIFTG 351
YLPAWCS ADYVKLLQS SL+DIKAEDWS+NVAPFWPAVI SALTWKGFTS+LR+ T
Sbjct: 280 YLPAWCSAADYVKLLQSNSLQDIKAEDWSENVAPFWPAVIKSALTWKGFTSVLRSGWKTI 339
Query: 352 RKVLLCNHIEEDFPNAL 368
+ L + E + L
Sbjct: 340 KAALAMPLMIEGYKKGL 356
|
Source: Solanum tuberosum Species: Solanum tuberosum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359807465|ref|NP_001240883.1| tocopherol O-methyltransferase, chloroplastic-like [Glycine max] gi|342330688|dbj|BAK57287.1| gamma-tocopherol methyltransferase [Glycine max] gi|342330694|dbj|BAK57290.1| gamma-tocopherol methyltransferase [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 206/263 (78%), Positives = 238/263 (90%), Gaps = 1/263 (0%)
Query: 94 ELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGV-S 152
+L++GIAEFYDESS +WE+IWGDHMHHGFY+PDS+VSVSDHRAAQ+RMI+E+LRFA + S
Sbjct: 15 KLQKGIAEFYDESSGIWENIWGDHMHHGFYDPDSTVSVSDHRAAQIRMIQESLRFASLLS 74
Query: 153 EDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSF 212
E+P+K PK++VDVGCGIGGSSRYLAKKFGA GITLSPVQAQRAN+LAAA+GLADKVSF
Sbjct: 75 ENPSKWPKSIVDVGCGIGGSSRYLAKKFGATSVGITLSPVQAQRANSLAAAQGLADKVSF 134
Query: 213 QVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPS 272
+V DAL+QPFPDG+FDLVWSMESGEHMPDK+KFV ELARV AP GTIIIVTWCHRDL P
Sbjct: 135 EVADALKQPFPDGKFDLVWSMESGEHMPDKAKFVGELARVAAPGGTIIIVTWCHRDLGPD 194
Query: 273 EESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPAVIH 332
E+SL PWEQ+LLKKICD+YYLPAWCST+DYVKLL+SLSL+DIK+ DWS VAPFWPAVI
Sbjct: 195 EQSLLPWEQDLLKKICDSYYLPAWCSTSDYVKLLESLSLQDIKSADWSPFVAPFWPAVIR 254
Query: 333 SALTWKGFTSLLRTEIFTGRKVL 355
+ALTW G TSLLR+ + T + L
Sbjct: 255 TALTWNGLTSLLRSGLKTIKGAL 277
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|318068176|gb|ADV36922.1| gamma-tocopherol methyltransferase [Solanum tuberosum] | Back alignment and taxonomy information |
|---|
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 213/312 (68%), Positives = 249/312 (79%), Gaps = 10/312 (3%)
Query: 64 LFGVSSFSRKLITRASSTTSTTTMSDAAA-------RELKEGIAEFYDESSSLWEDIWGD 116
+ SS SR+ R +S T+ +S ++ +ELK+GIA+ YDESS +WEDIWGD
Sbjct: 48 IITCSSNSRR---RMASVTALNAVSSSSVEVGIQNQQELKKGIADLYDESSGIWEDIWGD 104
Query: 117 HMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYL 176
HMHHG+YEP SSV +SDHRAAQ+RMIE+ L FA +SEDP K+P ++VDVGCGIGGSSRYL
Sbjct: 105 HMHHGYYEPQSSVELSDHRAAQIRMIEKALSFAAISEDPAKKPTSIVDVGCGIGGSSRYL 164
Query: 177 AKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236
AKK+GA +GITLSPVQA+RA ALA A+GL DKVSFQV DAL QPFPDGQFDLVWSMESG
Sbjct: 165 AKKYGATAKGITLSPVQAERAQALADAQGLGDKVSFQVADALNQPFPDGQFDLVWSMESG 224
Query: 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAW 296
EHMP+K KFV ELARV AP GTII+VTWCHRDL+PSEESL P E+ELL KIC A+YLPAW
Sbjct: 225 EHMPNKEKFVGELARVAAPGGTIILVTWCHRDLSPSEESLTPEEKELLNKICKAFYLPAW 284
Query: 297 CSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPAVIHSALTWKGFTSLLRTEIFTGRKVLL 356
CSTADYVKLLQS SL+DIKA+DWS+NVAPFWPAVI SALTWKG TS+LR+ T + L
Sbjct: 285 CSTADYVKLLQSNSLQDIKAQDWSENVAPFWPAVIKSALTWKGLTSVLRSGWKTIKAALA 344
Query: 357 CNHIEEDFPNAL 368
+ E + L
Sbjct: 345 MPLMIEGYKKGL 356
|
Source: Solanum tuberosum Species: Solanum tuberosum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|325516264|gb|ADZ24710.1| gamma-tocopherol methyltransferase [Solanum pennellii] | Back alignment and taxonomy information |
|---|
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 207/288 (71%), Positives = 239/288 (82%)
Query: 81 TTSTTTMSDAAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVR 140
++S+ + +ELK+GIA+ YDESS +WEDIWGDHMHHG+YEP SSV +SDHRAAQ+R
Sbjct: 62 SSSSVEVGIQNQQELKKGIADLYDESSGIWEDIWGDHMHHGYYEPKSSVELSDHRAAQIR 121
Query: 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANAL 200
MIE+ L FA +SEDP K+P ++VDVGCGIGGSSRYLAKK+GA +GITLSPVQA+RA AL
Sbjct: 122 MIEQALSFAAISEDPAKKPTSIVDVGCGIGGSSRYLAKKYGATAKGITLSPVQAERAQAL 181
Query: 201 AAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTII 260
A A+GL DKVSFQV DAL QPFPDGQFDLVWSMESGEHMP+K KFV ELARV AP GTII
Sbjct: 182 ADAQGLGDKVSFQVADALNQPFPDGQFDLVWSMESGEHMPNKEKFVGELARVAAPGGTII 241
Query: 261 IVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWS 320
+VTWCHRDL+PSEESL P E+ELL KIC A+YLPAWCSTADYV LLQS SL+DIKAEDWS
Sbjct: 242 LVTWCHRDLSPSEESLTPEEKELLNKICKAFYLPAWCSTADYVNLLQSNSLQDIKAEDWS 301
Query: 321 QNVAPFWPAVIHSALTWKGFTSLLRTEIFTGRKVLLCNHIEEDFPNAL 368
+NVAPFWPAVI SALTWKGFTS+LR+ T + L + E + L
Sbjct: 302 ENVAPFWPAVIKSALTWKGFTSVLRSGWKTIKAALAMPLMIEGYKKGL 349
|
Source: Solanum pennellii Species: Solanum pennellii Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|342330690|dbj|BAK57288.1| gamma-tocopherol methyltransferase [Glycine max] gi|342330692|dbj|BAK57289.1| gamma-tocopherol methyltransferase [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 205/263 (77%), Positives = 237/263 (90%), Gaps = 1/263 (0%)
Query: 94 ELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGV-S 152
+L++GIAEFYDESS +WE+IWGDHMHHGFY+PDS+VSVSDHRAAQ+RMI+E+LRFA + S
Sbjct: 15 KLQKGIAEFYDESSGIWENIWGDHMHHGFYDPDSTVSVSDHRAAQIRMIQESLRFASLLS 74
Query: 153 EDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSF 212
E+P+K PK++VDVGCGIGGSSRYLAKKFGA GITLSPVQAQRAN+LAAA+GLADKVSF
Sbjct: 75 ENPSKWPKSIVDVGCGIGGSSRYLAKKFGATSVGITLSPVQAQRANSLAAAQGLADKVSF 134
Query: 213 QVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPS 272
+V DAL+QPFPDG+FDLVWSMESGEHMPDK+KFV ELARV AP GTIIIVTWCHRDL P
Sbjct: 135 EVADALKQPFPDGKFDLVWSMESGEHMPDKAKFVGELARVAAPGGTIIIVTWCHRDLGPD 194
Query: 273 EESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPAVIH 332
E+SL PWEQ+LLKKICD+YYLPAWCS +DYVKLL+SLSL+DIK+ DWS VAPFWPAVI
Sbjct: 195 EQSLLPWEQDLLKKICDSYYLPAWCSISDYVKLLESLSLQDIKSADWSPFVAPFWPAVIR 254
Query: 333 SALTWKGFTSLLRTEIFTGRKVL 355
+ALTW G TSLLR+ + T + L
Sbjct: 255 TALTWNGLTSLLRSGLKTIKGAL 277
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 371 | ||||||
| TAIR|locus:2010921 | 348 | G-TMT "gamma-tocopherol methyl | 0.773 | 0.824 | 0.641 | 2.4e-99 | |
| DICTYBASE|DDB_G0275359 | 462 | DDB_G0275359 [Dictyostelium di | 0.606 | 0.487 | 0.258 | 5.2e-20 | |
| UNIPROTKB|G4N2S6 | 340 | MGG_04901 "Methyltransferase" | 0.245 | 0.267 | 0.375 | 1.3e-17 | |
| UNIPROTKB|Q9KJ21 | 279 | Q9KJ21 "Sarcosine/dimethylglyc | 0.547 | 0.727 | 0.299 | 8.8e-15 | |
| UNIPROTKB|Q9KJ20 | 565 | Q9KJ20 "Glycine/sarcosine/dime | 0.541 | 0.355 | 0.278 | 3.1e-14 | |
| UNIPROTKB|Q5LR84 | 407 | SPO2245 "Conserved domain prot | 0.266 | 0.243 | 0.383 | 1e-13 | |
| TIGR_CMR|SPO_2245 | 407 | SPO_2245 "conserved domain pro | 0.266 | 0.243 | 0.383 | 1e-13 | |
| TAIR|locus:2012938 | 361 | SMT2 "sterol methyltransferase | 0.625 | 0.642 | 0.250 | 3.9e-11 | |
| TIGR_CMR|CPS_3306 | 273 | CPS_3306 "methyltransferase, U | 0.318 | 0.432 | 0.304 | 4.6e-11 | |
| UNIPROTKB|G5EGY9 | 380 | MGCH7_ch7g116 "Sterol 24-C-met | 0.571 | 0.557 | 0.245 | 5.9e-11 |
| TAIR|locus:2010921 G-TMT "gamma-tocopherol methyltransferase" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 986 (352.1 bits), Expect = 2.4e-99, P = 2.4e-99
Identities = 186/290 (64%), Positives = 213/290 (73%)
Query: 60 RSSLLFGVSSFSRKLIXXXXXXXXXXXXXXXXXRELKEGIAEFYDESSSLWEDIWGDHMH 119
+SSLLF S S + L++GIAEFY+E+S LWE+IWGDHMH
Sbjct: 25 KSSLLFRSPSSSSSVSMTTTRGNVAVAAAATSTEALRKGIAEFYNETSGLWEEIWGDHMH 84
Query: 120 HGFYEPDSSVSVSD--HRAAQVRMIEETLRFAGVS-EDPTKRPKNVVDVGCGIGGSSRYL 176
HGFY+PDSSV +SD H+ AQ+RMIEE+LRFAGV+ E+ K+ K VVDVGCGIGGSSRYL
Sbjct: 85 HGFYDPDSSVQLSDSGHKEAQIRMIEESLRFAGVTDEEEEKKIKKVVDVGCGIGGSSRYL 144
Query: 177 AKKFGAKCQGITLSPVXXXXXXXXXXXXXXXDKVSFQVGDALQQPFPDGQFDLVWSMESG 236
A KFGA+C GITLSPV K SFQV DAL QPF DG+FDLVWSMESG
Sbjct: 145 ASKFGAECIGITLSPVQAKRANDLAAAQSLAHKASFQVADALDQPFEDGKFDLVWSMESG 204
Query: 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAW 296
EHMPDK+KFV EL RV AP G IIIVTWCHR+L+ EE+LQPWEQ +L KIC +YLPAW
Sbjct: 205 EHMPDKAKFVKELVRVAAPGGRIIIVTWCHRNLSAGEEALQPWEQNILDKICKTFYLPAW 264
Query: 297 CSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPAVIHSALTWKGFTSLLRT 346
CST DYV LLQS SL+DIK DWS+NVAPFWPAVI +ALTWKG SLLR+
Sbjct: 265 CSTDDYVNLLQSHSLQDIKCADWSENVAPFWPAVIRTALTWKGLVSLLRS 314
|
|
| DICTYBASE|DDB_G0275359 DDB_G0275359 [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 243 (90.6 bits), Expect = 5.2e-20, P = 5.2e-20
Identities = 63/244 (25%), Positives = 116/244 (47%)
Query: 99 IAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLR-FAGVSEDPTK 157
++++YD + ++ WG+H H ++ D+ + V+ +E ++ A +++D
Sbjct: 189 VSDYYDIVTETYQSGWGNHFHFAPFKTDT-----EPLETAVKRLEHSVADSARITKDSL- 242
Query: 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVXXXXXXXXXXXXXXXDKVSFQVGDA 217
V+DVGCG+GG + + + G K +G+ ++ D+ SF GDA
Sbjct: 243 ----VLDVGCGVGGPTLEICQYTGCKIRGLNINKKQVGIATQRAKDLGVSDRASFDHGDA 298
Query: 218 LQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQ 277
++ P+PD FD+V ES HMPDK F+ E RV P G + W + P+E+ +
Sbjct: 299 MKMPYPDNTFDVVTFFESTCHMPDKQAFIKECYRVLKPGGRMSGSEWLQCE-KPTEKDIV 357
Query: 278 PWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQ--NVAPFWPAVIHSAL 335
+ ++ IC + +P S Y +++S A D +Q N+ W + + +
Sbjct: 358 ----QFIEPICAHHSVPHMGSLMSYRSMMESAGFYVHIAMDLTQEGNILRNWEVLDNKTI 413
Query: 336 -TWK 338
T+K
Sbjct: 414 NTFK 417
|
|
| UNIPROTKB|G4N2S6 MGG_04901 "Methyltransferase" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 180 (68.4 bits), Expect = 1.3e-17, Sum P(2) = 1.3e-17
Identities = 36/96 (37%), Positives = 55/96 (57%)
Query: 95 LKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSED 154
LK+ I YD +S + +WG H+HHG++ D S + AQ +I+ L + + E
Sbjct: 35 LKDRIKLHYDLASDYYLSLWGQHVHHGYWPTDESKAKDTKEVAQTNLIDLLLEISKIPEG 94
Query: 155 PTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLS 190
+ V+DVGCG+GG++R+LA K G GIT+S
Sbjct: 95 GS-----VLDVGCGLGGTTRHLASKLGCSVTGITIS 125
|
|
| UNIPROTKB|Q9KJ21 Q9KJ21 "Sarcosine/dimethylglycine N-methyltransferase" [Halorhodospira halochloris (taxid:1052)] | Back alignment and assigned GO terms |
|---|
Score = 199 (75.1 bits), Expect = 8.8e-15, P = 8.8e-15
Identities = 68/227 (29%), Positives = 102/227 (44%)
Query: 97 EGIAEFY--DESSSLWEDIWG-DHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSE 153
E ++Y +++ + + IWG + +H G Y D ++D A R +E R + +S
Sbjct: 11 ETARQYYNSEDADNFYAIIWGGEDIHIGLYNDDEE-PIAD---ASRRTVE---RMSSLSR 63
Query: 154 DPTKRPKN-VVDVGCGIGGSSRYLAKKFGAKCQGITLSPVXXXXXXXXXXXXXXXDKVSF 212
P + V+D+G G GGS+RYLA K+G K + LS D +
Sbjct: 64 Q--LGPDSYVLDMGAGYGGSARYLAHKYGCKVAALNLSE-RENERDRQMNKEQGVDHLIE 120
Query: 213 QVGDALQQ-PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAP 271
V A + P+ DG FDLVWS +S H PD+ + + E +RV G I D P
Sbjct: 121 VVDAAFEDVPYDDGVFDLVWSQDSFLHSPDRERVLREASRVLRSGGEFIFTDPMQADDCP 180
Query: 272 SEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAED 318
E +QP I D +L + Y + L+ L E+I ED
Sbjct: 181 -EGVIQP--------ILDRIHLETMGTPNFYRQTLRDLGFEEITFED 218
|
|
| UNIPROTKB|Q9KJ20 Q9KJ20 "Glycine/sarcosine/dimethylglycine N-methyltransferase" [Actinopolyspora halophila (taxid:1850)] | Back alignment and assigned GO terms |
|---|
Score = 207 (77.9 bits), Expect = 3.1e-14, P = 3.1e-14
Identities = 63/226 (27%), Positives = 102/226 (45%)
Query: 101 EFY--DESSSLWEDIWGDH-MHHGFYE-PDSSVSVSDHRAAQVRMIEETLRFAG-VSEDP 155
++Y +++ + + +WG + +H G Y+ P ++ + R Q R AG V P
Sbjct: 303 DYYNSEDADNFYYHVWGGNDIHVGLYQTPQEDIATASERTVQ--------RMAGKVDISP 354
Query: 156 TKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVXXXXXXXXXXXXXXXDKVSFQVG 215
R ++D+G G GG++RYLA+ +G + LS V + G
Sbjct: 355 ETR---ILDLGAGYGGAARYLARTYGCHVTCLNLSEVENQRNREITRAEGLEHLIEVTDG 411
Query: 216 DALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEES 275
P+ D FD+VWS +S H D+S+ + E+ RV P G+++ D A E
Sbjct: 412 SFEDLPYQDNAFDVVWSQDSFLHSGDRSRVMEEVTRVLKPKGSVLFTDPMASDSAKKNE- 470
Query: 276 LQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQ 321
L P I D +L + S Y K L L L++I+ ED S+
Sbjct: 471 LGP--------ILDRLHLDSLGSPGFYRKELTRLGLQNIEFEDLSE 508
|
|
| UNIPROTKB|Q5LR84 SPO2245 "Conserved domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 196 (74.1 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 38/99 (38%), Positives = 53/99 (53%)
Query: 163 VDVGCGIGGSSRYLAKKFGAKCQGITLSPVXXXXXXXXXXXXXXXDKVSFQVGDALQQPF 222
+D+GCG+GG++RY A FG++ +GI L+P DKV+ V AL PF
Sbjct: 200 LDIGCGLGGAARYAAHSFGSQIEGIDLTPEYVETGGALCQWVGLSDKVNLSVASALSMPF 259
Query: 223 PDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIII 261
G FD+ + M G ++ DK E+ARV P GT I
Sbjct: 260 ESGDFDIAYMMHVGMNIEDKRALFKEVARVLKPGGTFAI 298
|
|
| TIGR_CMR|SPO_2245 SPO_2245 "conserved domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 196 (74.1 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 38/99 (38%), Positives = 53/99 (53%)
Query: 163 VDVGCGIGGSSRYLAKKFGAKCQGITLSPVXXXXXXXXXXXXXXXDKVSFQVGDALQQPF 222
+D+GCG+GG++RY A FG++ +GI L+P DKV+ V AL PF
Sbjct: 200 LDIGCGLGGAARYAAHSFGSQIEGIDLTPEYVETGGALCQWVGLSDKVNLSVASALSMPF 259
Query: 223 PDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIII 261
G FD+ + M G ++ DK E+ARV P GT I
Sbjct: 260 ESGDFDIAYMMHVGMNIEDKRALFKEVARVLKPGGTFAI 298
|
|
| TAIR|locus:2012938 SMT2 "sterol methyltransferase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 177 (67.4 bits), Expect = 3.9e-11, P = 3.9e-11
Identities = 63/251 (25%), Positives = 101/251 (40%)
Query: 94 ELKEGIAEFYDESSSLWEDI----WGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFA 149
E E + +F D +L DI WG H + P S+ H+ A R+ EE
Sbjct: 65 ETAEKVPDFVDTFYNLVTDIYEWGWGQSFH---FSP--SIPGKSHKDA-TRLHEEM---- 114
Query: 150 GVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVXXXXXXXXXXXXXXXDK 209
V K + ++DVGCG+GG R +A A GIT++
Sbjct: 115 AVDLIQVKPGQKILDVGCGVGGPMRAIASHSRANVVGITINEYQVNRARLHNKKAGLDAL 174
Query: 210 VSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDL 269
G+ LQ PF D FD +S+E+ H P + +E+ RV P + W +
Sbjct: 175 CEVVCGNFLQMPFDDNSFDGAYSIEATCHAPKLEEVYAEIYRVLKPGSMYVSYEWVTTEK 234
Query: 270 APSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVA-PFWP 328
+E+ E+++ I LP + D + + + E +K +D + A P+W
Sbjct: 235 FKAEDDEHV---EVIQGIERGDALPGLRAYVDIAETAKKVGFEIVKEKDLASPPAEPWWT 291
Query: 329 AVIHSALT-WK 338
+ L W+
Sbjct: 292 RLKMGRLAYWR 302
|
|
| TIGR_CMR|CPS_3306 CPS_3306 "methyltransferase, UbiE/COQ5 family" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 172 (65.6 bits), Expect = 4.6e-11, P = 4.6e-11
Identities = 38/125 (30%), Positives = 62/125 (49%)
Query: 161 NVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVXXXXXXXXXXXXXXXDKVSFQVGDALQQ 220
+++DVGCG+GGS+R L+ + G GI LS +V F VG AL+
Sbjct: 64 HILDVGCGVGGSTRRLSHETGCHVTGIDLSDEYIDAAERLTQLLNMQARVKFNVGSALEL 123
Query: 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQ--- 277
P+ D FD WS++ ++ DK ++ E+ RV P ++ C + E+++
Sbjct: 124 PYADNTFDGAWSIQMNMNVEDKLGWLKEMYRVLKPGARAVLYEVCGHE----EKTIYFPV 179
Query: 278 PWEQE 282
PW Q+
Sbjct: 180 PWAQD 184
|
|
| UNIPROTKB|G5EGY9 MGCH7_ch7g116 "Sterol 24-C-methyltransferase" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 176 (67.0 bits), Expect = 5.9e-11, P = 5.9e-11
Identities = 57/232 (24%), Positives = 99/232 (42%)
Query: 102 FYDESSSLWEDIWGDHMHHGFYEPDSSV--SVSDHRAAQVRMIEETLRFAGVSEDPTKRP 159
+Y+ ++ ++E WG H + + S +++ H I G+ E T
Sbjct: 83 YYNLATDIYEYGWGQSFHFCRFSHNESFYQAIARHEHYLAHQI-------GIKEGMT--- 132
Query: 160 KNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVXXXXXXXXXXXXXXXDKVSFQVGDALQ 219
V+DVGCG+GG +R +AK G G+ + ++ F GD +Q
Sbjct: 133 --VLDVGCGVGGPAREIAKFTGCNVVGLNNNDYQIDRATHYAKQEKLDSQLQFVKGDFMQ 190
Query: 220 QPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPW 279
FPD FD V+++E+ H P SE+ RV P GT + W D ++L
Sbjct: 191 MSFPDESFDAVYAIEATVHAPKLEGVYSEIFRVLKPGGTFGVYEWLMTD-DYDNDNLH-- 247
Query: 280 EQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQ--NVAP-FWP 328
+++ KI + ++ +++ E IK +D +Q + P +WP
Sbjct: 248 HRDIRLKIELGNGISNMVPISEGEAAMRAAGFEIIKTDDLAQKGDELPWYWP 299
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9ZSK1 | GTOMC_ARATH | 2, ., 1, ., 1, ., 9, 5 | 0.7333 | 0.6792 | 0.7241 | yes | no |
| Q6ZIK0 | GTOMC_ORYSJ | 2, ., 1, ., 1, ., 9, 5 | 0.7153 | 0.7385 | 0.7569 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 2.1.1.95 | LOW CONFIDENCE prediction! |
| 3rd Layer | 2.1.1 | 0.963 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 371 | |||
| PLN02244 | 340 | PLN02244, PLN02244, tocopherol O-methyltransferase | 0.0 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 7e-25 | |
| PRK08317 | 241 | PRK08317, PRK08317, hypothetical protein; Provisio | 1e-19 | |
| COG2230 | 283 | COG2230, Cfa, Cyclopropane fatty acid synthase and | 6e-17 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 4e-16 | |
| PLN02336 | 475 | PLN02336, PLN02336, phosphoethanolamine N-methyltr | 4e-16 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 8e-15 | |
| COG2226 | 238 | COG2226, UbiE, Methylase involved in ubiquinone/me | 1e-14 | |
| PTZ00098 | 263 | PTZ00098, PTZ00098, phosphoethanolamine N-methyltr | 6e-14 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 9e-14 | |
| pfam13489 | 154 | pfam13489, Methyltransf_23, Methyltransferase doma | 1e-11 | |
| pfam02353 | 273 | pfam02353, CMAS, Mycolic acid cyclopropane synthet | 1e-11 | |
| PRK00216 | 239 | PRK00216, ubiE, ubiquinone/menaquinone biosynthesi | 3e-11 | |
| PRK10258 | 251 | PRK10258, PRK10258, biotin biosynthesis protein Bi | 4e-11 | |
| TIGR01934 | 223 | TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone | 1e-10 | |
| pfam13649 | 97 | pfam13649, Methyltransf_25, Methyltransferase doma | 2e-10 | |
| pfam13659 | 117 | pfam13659, Methyltransf_26, Methyltransferase doma | 9e-10 | |
| COG0500 | 257 | COG0500, SmtA, SAM-dependent methyltransferases [S | 1e-09 | |
| TIGR01983 | 224 | TIGR01983, UbiG, ubiquinone biosynthesis O-methylt | 1e-09 | |
| TIGR02021 | 219 | TIGR02021, BchM-ChlM, magnesium protoporphyrin O-m | 1e-09 | |
| smart00828 | 224 | smart00828, PKS_MT, Methyltransferase in polyketid | 1e-09 | |
| pfam08242 | 98 | pfam08242, Methyltransf_12, Methyltransferase doma | 2e-09 | |
| COG2227 | 243 | COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-m | 4e-09 | |
| TIGR02072 | 240 | TIGR02072, BioC, biotin biosynthesis protein BioC | 5e-09 | |
| COG4106 | 257 | COG4106, Tam, Trans-aconitate methyltransferase [G | 3e-08 | |
| PRK05134 | 233 | PRK05134, PRK05134, bifunctional 3-demethylubiquin | 3e-08 | |
| PRK07580 | 230 | PRK07580, PRK07580, Mg-protoporphyrin IX methyl tr | 8e-07 | |
| PRK11705 | 383 | PRK11705, PRK11705, cyclopropane fatty acyl phosph | 4e-06 | |
| TIGR02752 | 231 | TIGR02752, MenG_heptapren, demethylmenaquinone met | 4e-06 | |
| PLN02233 | 261 | PLN02233, PLN02233, ubiquinone biosynthesis methyl | 1e-05 | |
| pfam01209 | 233 | pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransf | 1e-05 | |
| PRK09328 | 275 | PRK09328, PRK09328, N5-glutamine S-adenosyl-L-meth | 8e-05 | |
| COG4123 | 248 | COG4123, COG4123, Predicted O-methyltransferase [G | 1e-04 | |
| PRK11088 | 272 | PRK11088, rrmA, 23S rRNA methyltransferase A; Prov | 2e-04 | |
| pfam12147 | 311 | pfam12147, Methyltransf_20, Putative methyltransfe | 3e-04 | |
| COG2265 | 432 | COG2265, TrmA, SAM-dependent methyltransferases re | 4e-04 | |
| PRK05785 | 226 | PRK05785, PRK05785, hypothetical protein; Provisio | 7e-04 | |
| TIGR03534 | 251 | TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) met | 0.001 | |
| COG4122 | 219 | COG4122, COG4122, Predicted O-methyltransferase [G | 0.002 | |
| pfam13679 | 143 | pfam13679, Methyltransf_32, Methyltransferase doma | 0.002 | |
| PRK14968 | 188 | PRK14968, PRK14968, putative methyltransferase; Pr | 0.002 | |
| PLN02396 | 322 | PLN02396, PLN02396, hexaprenyldihydroxybenzoate me | 0.003 | |
| pfam05175 | 170 | pfam05175, MTS, Methyltransferase small domain | 0.003 | |
| PLN02490 | 340 | PLN02490, PLN02490, MPBQ/MSBQ methyltransferase | 0.003 | |
| PRK14103 | 255 | PRK14103, PRK14103, trans-aconitate 2-methyltransf | 0.004 | |
| COG0030 | 259 | COG0030, KsgA, Dimethyladenosine transferase (rRNA | 0.004 |
| >gnl|CDD|215135 PLN02244, PLN02244, tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Score = 521 bits (1345), Expect = 0.0
Identities = 201/311 (64%), Positives = 233/311 (74%), Gaps = 13/311 (4%)
Query: 41 MSACLRPSLLPAPPPAPTWRSSLLFGVSSFSRKLITRASSTTSTTTMSDAAAR------E 94
+A L + A T RS + SR + + + + DAA+ +
Sbjct: 2 PAAALASR---SSSSATTSRSG--SRSTRLSRPSSSASGVRRTLARLEDAASPAPAATAD 56
Query: 95 LKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSED 154
LKEGIAEFYDESS +WED+WG+HMHHG+Y+P +S DHR AQ+RMIEE+L +AGV +D
Sbjct: 57 LKEGIAEFYDESSGVWEDVWGEHMHHGYYDPGASRG--DHRQAQIRMIEESLAWAGVPDD 114
Query: 155 PTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQV 214
KRPK +VDVGCGIGGSSRYLA+K+GA +GITLSPVQA RANALAAA+GL+DKVSFQV
Sbjct: 115 DEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQV 174
Query: 215 GDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEE 274
DAL QPF DGQFDLVWSMESGEHMPDK KFV ELARV AP G IIIVTWCHRDL P E
Sbjct: 175 ADALNQPFEDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGET 234
Query: 275 SLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPAVIHSA 334
SL+P EQ+LL KIC AYYLPAWCST+DYVKL +SL L+DIK EDWS++VAPFWPAVI SA
Sbjct: 235 SLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQDIKTEDWSEHVAPFWPAVIKSA 294
Query: 335 LTWKGFTSLLR 345
LT KG LL
Sbjct: 295 LTLKGLFGLLT 305
|
Length = 340 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 96.6 bits (241), Expect = 7e-25
Identities = 38/99 (38%), Positives = 51/99 (51%), Gaps = 7/99 (7%)
Query: 163 VDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF 222
+DVGCG G + LA++ GA+ G+ LSP A F VGDA PF
Sbjct: 1 LDVGCGTGLLAEALARRGGARVTGVDLSPEMLALARK-------RAPRKFVVGDAEDLPF 53
Query: 223 PDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIII 261
PD FD+V S H+PD + + E+ARV P G ++I
Sbjct: 54 PDESFDVVVSSLVLHHLPDPERALREIARVLKPGGKLVI 92
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 86.5 bits (215), Expect = 1e-19
Identities = 41/120 (34%), Positives = 61/120 (50%), Gaps = 5/120 (4%)
Query: 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAA 202
T V V+DVGCG G +R LA++ G + + + + +A A A
Sbjct: 9 ARTFELLAVQPGDR-----VLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKER 63
Query: 203 ARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262
A GL V F GDA PFPDG FD V S +H+ D ++ ++E+ARV P G ++++
Sbjct: 64 AAGLGPNVEFVRGDADGLPFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVL 123
|
Length = 241 |
| >gnl|CDD|225139 COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 6e-17
Identities = 56/240 (23%), Positives = 97/240 (40%), Gaps = 31/240 (12%)
Query: 96 KEGIAEFYDESSSLWEDIWGDHMHH--GFYE-PDSSVSVSDHRAAQVRMIEETLRFAGVS 152
E I YD S+ + M + ++E PD ++ AQ ++ L G+
Sbjct: 17 AENIQAHYDLSNDFYRLFLDPSMTYSCAYFEDPDMTLE-----EAQRAKLDLILEKLGL- 70
Query: 153 EDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSF 212
P ++D+GCG GG + Y A+++G G+TLS Q A AARGL D V
Sbjct: 71 -KPGMT---LLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEV 126
Query: 213 QVGDALQQPFPDGQFDLVWSMESGEHMPDKS--KFVSELARVTAPAGTIIIVTWCHRDLA 270
++ D + FD + S+ EH+ ++ F ++ + P G +++ + D
Sbjct: 127 RLQD---YRDFEEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPD-- 181
Query: 271 PSEESLQPWEQELLKKICDAYYLPA------WCSTADY-VKLLQSLSLEDIK-AEDWSQN 322
+ + K I LP+ S A + V ++SL + W +
Sbjct: 182 QEFRRFPDF---IDKYIFPGGELPSISEILELASEAGFVVLDVESLRPHYARTLRLWRER 238
|
Length = 283 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 4e-16
Identities = 38/112 (33%), Positives = 54/112 (48%), Gaps = 6/112 (5%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQ--GITLSPVQAQRANALAAARGLADKVSFQV 214
K V+D+GCG G + LA+K G + GI +S ++A A G + V F
Sbjct: 2 KSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGY-ENVEFIQ 60
Query: 215 GDALQQP---FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263
GD + P D FD+V S E H+PD K + E+ RV P G +I+
Sbjct: 61 GDIEELPQLQLEDNSFDVVISNEVLNHLPDPDKVLEEIIRVLKPGGVLIVSD 112
|
This family appears to be have methyltransferase activity. Length = 151 |
| >gnl|CDD|177970 PLN02336, PLN02336, phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Score = 79.0 bits (195), Expect = 4e-16
Identities = 45/137 (32%), Positives = 65/137 (47%), Gaps = 12/137 (8%)
Query: 142 IEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRAN--- 198
+E T F V + K + V+DVGCGIGG Y+A+ F GI LS N
Sbjct: 252 LETTKEF--VDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLS------VNMIS 303
Query: 199 -ALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAG 257
AL A G V F+V D ++ +PD FD+++S ++ H+ DK + P G
Sbjct: 304 FALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGG 363
Query: 258 TIIIVTWCHRDLAPSEE 274
++I +C PS E
Sbjct: 364 KVLISDYCRSPGTPSPE 380
|
Length = 475 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 8e-15
Identities = 37/106 (34%), Positives = 55/106 (51%), Gaps = 3/106 (2%)
Query: 161 NVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ- 219
V+D+GCG G + LA GA+ G+ +SPV + A AAA LAD V GDA +
Sbjct: 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARK-AAAALLADNVEVLKGDAEEL 59
Query: 220 QPFPDGQFDLVWSMESGEH-MPDKSKFVSELARVTAPAGTIIIVTW 264
P D FD++ S H + D ++F+ E R+ P G +++
Sbjct: 60 PPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLTLV 105
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 1e-14
Identities = 44/144 (30%), Positives = 64/144 (44%), Gaps = 26/144 (18%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADK-----V 210
K V+DV CG G + LAK G + G+ +S + L AR K V
Sbjct: 50 KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISE------SMLEVAREKLKKKGVQNV 103
Query: 211 SFQVGDALQQPFPDGQFDLVWSMESG-EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDL 269
F VGDA PFPD FD V ++ G ++ D K + E+ RV P G ++++
Sbjct: 104 EFVVGDAENLPFPDNSFDAV-TISFGLRNVTDIDKALKEMYRVLKPGGRLLVL------- 155
Query: 270 APSEESLQPWEQELLKKICDAYYL 293
E +P + +L+K YY
Sbjct: 156 ----EFSKP-DNPVLRKAYILYYF 174
|
Length = 238 |
| >gnl|CDD|173391 PTZ00098, PTZ00098, phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 70.8 bits (173), Expect = 6e-14
Identities = 39/161 (24%), Positives = 80/161 (49%), Gaps = 14/161 (8%)
Query: 162 VVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP 221
V+D+G G+GG +Y+ +K+GA G+ + A + + +K+ F+ D L++
Sbjct: 56 VLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDK---NKIEFEANDILKKD 112
Query: 222 FPDGQFDLVWSMESGEHMP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPW 279
FP+ FD+++S ++ H+ DK K + + P G ++I +C + ++ W
Sbjct: 113 FPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYC-------ADKIENW 165
Query: 280 EQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWS 320
++E I Y +Y L++S + +++ A+D S
Sbjct: 166 DEEFKAYIKKRKY--TLIPIQEYGDLIKSCNFQNVVAKDIS 204
|
Length = 263 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 9e-14
Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 5/107 (4%)
Query: 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216
V+D+GCG G + LA+ F GA+ G+ LSP + A A L +++F GD
Sbjct: 1 PGARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARE-NAKLALGPRITFVQGD 59
Query: 217 ALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263
A FD V+ G + + + LA + P G +++
Sbjct: 60 APDALDLLEGFDAVFIGGGGGDLLE---LLDALASLLKPGGRLVLNA 103
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 1e-11
Identities = 32/137 (23%), Positives = 50/137 (36%), Gaps = 20/137 (14%)
Query: 134 HRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQ 193
R + + R K V+D+GCG G R L ++ G G+ SP
Sbjct: 2 RRQRERFLARLLARLL----PRLKPGGRVLDIGCGTGILLRLLRER-GFDVTGVDPSPAA 56
Query: 194 AQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVT 253
+ DA G++DL+ + E EH+PD + +L +
Sbjct: 57 VLIFSLF---------------DAPDPAVLAGKYDLITAFEVLEHLPDPPALLQQLRELL 101
Query: 254 APAGTIIIVTWCHRDLA 270
P G ++I T D A
Sbjct: 102 KPGGVLLISTPLADDDA 118
|
This family appears to be a methyltransferase domain. Length = 154 |
| >gnl|CDD|216988 pfam02353, CMAS, Mycolic acid cyclopropane synthetase | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 1e-11
Identities = 39/148 (26%), Positives = 63/148 (42%), Gaps = 12/148 (8%)
Query: 136 AAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQ 195
AQ ++ L G+ T ++D+GCG GG R A+++ G+TLS Q +
Sbjct: 45 EAQQAKLDLILDKLGLKPGMT-----LLDIGCGWGGLMRRAAERYDVNVVGLTLSKNQYK 99
Query: 196 RANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKS--KFVSELARVT 253
A AA GL KV + D D FD + S+ EH+ ++ F +L +
Sbjct: 100 HARQRVAAEGLQRKVEVLLQDYRDF---DEPFDRIVSVGMFEHVGHENYDTFFKKLYNLL 156
Query: 254 APAGTIII--VTWCHRDLAPSEESLQPW 279
P G +++ +T H D +
Sbjct: 157 PPGGLMLLHTITGLHPDETSERGLPLKF 184
|
This family consist of Cyclopropane-fatty-acyl-phospholipid synthase or CFA synthase EC:2.1.1.79 this enzyme catalyze the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid <=> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. Length = 273 |
| >gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 62.5 bits (153), Expect = 3e-11
Identities = 44/142 (30%), Positives = 62/142 (43%), Gaps = 24/142 (16%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR------GLADKV 210
+ V+D+ CG G + LAK G + + L + LA R GL+ V
Sbjct: 50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGM----LAVGREKLRDLGLSGNV 105
Query: 211 SFQVGDALQQPFPDGQFDLVWSMESG-EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDL 269
F GDA PFPD FD V ++ G ++PD K + E+ RV P G ++I+
Sbjct: 106 EFVQGDAEALPFPDNSFDAV-TIAFGLRNVPDIDKALREMYRVLKPGGRLVIL------- 157
Query: 270 APSEESLQPWEQELLKKICDAY 291
E +P LKK D Y
Sbjct: 158 ----EFSKP-TNPPLKKAYDFY 174
|
Length = 239 |
| >gnl|CDD|182340 PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 4e-11
Identities = 39/129 (30%), Positives = 58/129 (44%), Gaps = 16/129 (12%)
Query: 155 PTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSP---VQAQRANALAAARGLADKVS 211
P ++ +V+D GCG G SRY ++ G++ + LSP QA++ +A AD
Sbjct: 39 PQRKFTHVLDAGCGPGWMSRYWRER-GSQVTALDLSPPMLAQARQKDA-------ADH-- 88
Query: 212 FQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAP 271
+ GD P FDL WS + + + S + EL RV P G + T L
Sbjct: 89 YLAGDIESLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSLP- 147
Query: 272 SEESLQPWE 280
E Q W+
Sbjct: 148 --ELHQAWQ 154
|
Length = 251 |
| >gnl|CDD|233645 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 1e-10
Identities = 43/163 (26%), Positives = 62/163 (38%), Gaps = 37/163 (22%)
Query: 135 RAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPV 192
R V++I + + V+DV CG G + LAK K G+ S
Sbjct: 28 RRRAVKLIGV------------FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSS- 74
Query: 193 QAQRANALAAARG---LADKVSFQVGDALQQPFPDGQFDLVWSMESG-EHMPDKSKFVSE 248
L A+ L + F DA PF D FD V ++ G ++ D K + E
Sbjct: 75 -----EMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAV-TIAFGLRNVTDIQKALRE 128
Query: 249 LARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAY 291
+ RV P G ++I+ E +P LLKK Y
Sbjct: 129 MYRVLKPGGRLVIL-----------EFSKP-ANALLKKFYKFY 159
|
This model represents a family of methyltransferases involved in the biosynthesis of menaquinone and ubiqinone. Some members such as the UbiE enzyme from E. coli are believed to act in both pathways, while others may act in only the menaquinone pathway. These methyltransferases are members of the UbiE/CoQ family of methyltransferases (pfam01209) which also contains ubiquinone methyltransferases and other methyltransferases. Members of this clade include a wide distribution of bacteria and eukaryotes, but no archaea. An outgroup for this clade is provided by the phosphatidylethanolamine methyltransferase (EC 2.1.1.17) from Rhodobacter sphaeroides. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 223 |
| >gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 2e-10
Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 5/99 (5%)
Query: 162 VVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP 221
++D+GCG G R LA+ + G+ +S + A +G KV F V DA P
Sbjct: 1 ILDLGCGTGRVLRALARAGPSSVTGVDISKEALELAKERLRDKGP--KVRFVVADARDLP 58
Query: 222 FPDGQFDLVWSMESG-EHMPDKS--KFVSELARVTAPAG 257
F +G FDLV +++ K + E AR+ P G
Sbjct: 59 FEEGSFDLVICAGLSLDYLSPKQLRALLREAARLLRPGG 97
|
This family appears to be a methyltransferase domain. Length = 97 |
| >gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 9e-10
Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 10/116 (8%)
Query: 159 PKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA 217
V+D G G G A+ A+ G+ L P A A A GLA +V VGDA
Sbjct: 1 GDRVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRLALAGLAPRVRVVVGDA 60
Query: 218 LQ-QPFPDGQFDLV-----WSMESGEHMPDKS---KFVSELARVTAPAGTIIIVTW 264
+ PDG FDLV + +G+ ++ +F++ R+ P G ++++T
Sbjct: 61 RELLELPDGSFDLVLGNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGGVLVVITP 116
|
This family contains methyltransferase domains. Length = 117 |
| >gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 58.4 bits (138), Expect = 1e-09
Identities = 41/167 (24%), Positives = 61/167 (36%), Gaps = 6/167 (3%)
Query: 154 DPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADK-VSF 212
V+D+GCG G + LA+ G + + A A A A G V F
Sbjct: 44 RLLPGGLGVLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDF 102
Query: 213 QVGDALQQ--PFPDG-QFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDL 269
V DAL PF D FDLV S+ H+ +K + EL RV P G +++ L
Sbjct: 103 VVADALGGVLPFEDSASFDLVISL-LVLHLLPPAKALRELLRVLKPGGRLVLSDLLRDGL 161
Query: 270 APSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKA 316
+ + + + D + + L + L L
Sbjct: 162 LEGRLAALLGFGDPVLERGDILLELEALLRLELLDLEELLGLLGELE 208
|
Length = 257 |
| >gnl|CDD|233668 TIGR01983, UbiG, ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 1e-09
Identities = 39/133 (29%), Positives = 58/133 (43%), Gaps = 9/133 (6%)
Query: 134 HRAAQVRM--IEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSP 191
H+ +R+ I +T+R ++ P V+DVGCG G S LA+ GA GI S
Sbjct: 23 HKMNPLRLDYIRDTIR---KNKKPLF-GLRVLDVGCGGGLLSEPLARL-GANVTGIDASE 77
Query: 192 VQAQRANALAAARGLADKVSFQVGDALQ-QPFPDGQFDLVWSMESGEHMPDKSKFVSELA 250
+ A A L K+ ++ FD+V ME EH+PD F+ A
Sbjct: 78 ENIEVAKLHAKKDPLL-KIEYRCTSVEDLAEKGAKSFDVVTCMEVLEHVPDPQAFIRACA 136
Query: 251 RVTAPAGTIIIVT 263
++ P G + T
Sbjct: 137 QLLKPGGILFFST 149
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 224 |
| >gnl|CDD|233687 TIGR02021, BchM-ChlM, magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 1e-09
Identities = 46/169 (27%), Positives = 69/169 (40%), Gaps = 16/169 (9%)
Query: 96 KEGIAEFYD-ESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSED 154
KE + ++D + W I+G +P S V R + M + L + +
Sbjct: 2 KEQVRHYFDGTAFQRWARIYGSG------DPVSRVR-QTVREGRAAMRRKLLDWLP-KDP 53
Query: 155 PTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQV 214
K V+D GCG G S LAK+ GA + + +S Q A A R +A V F+V
Sbjct: 54 LKG--KRVLDAGCGTGLLSIELAKR-GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEV 110
Query: 215 GDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263
D L G+FD+V M+ H P L + + +I T
Sbjct: 111 NDLLSL---CGEFDIVVCMDVLIHYPAS-DMAKALGHLASLTKERVIFT 155
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 219 |
| >gnl|CDD|214839 smart00828, PKS_MT, Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 1e-09
Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 160 KNVVDVGCGIGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218
K V+D GCG G LA++ + G T+SP QA+ A GL ++ D+
Sbjct: 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSA 60
Query: 219 QQPFPDGQFDLVWSMESGEHMPDKSKFVSELAR 251
+ PFPD +DLV+ E H+ DK S ++R
Sbjct: 61 KDPFPD-TYDLVFGFEVIHHIKDKMDLFSNISR 92
|
Length = 224 |
| >gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 2e-09
Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 5/100 (5%)
Query: 163 VDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGL--ADKVSFQVGDALQ 219
+D+GCG G R L + G + G+ +SP + A AA GL A +V V DA+
Sbjct: 1 LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAID 60
Query: 220 QPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTI 259
G FD+V + H+ D + L R+ P G +
Sbjct: 61 LDP--GSFDVVVASNVLHHLADPRAVLRNLRRLLKPGGVL 98
|
Members of this family are SAM dependent methyltransferases. Length = 98 |
| >gnl|CDD|225137 COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 4e-09
Identities = 36/112 (32%), Positives = 51/112 (45%), Gaps = 4/112 (3%)
Query: 160 KNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219
V+DVGCG G S LA+ GA GI S + A A G+ + ++
Sbjct: 61 LRVLDVGCGGGILSEPLARL-GASVTGIDASEKPIEVAKLHALESGV--NIDYRQATVED 117
Query: 220 QPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAP 271
GQFD+V ME EH+PD F+ A++ P G + + T +R L
Sbjct: 118 LASAGGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLST-INRTLKA 168
|
Length = 243 |
| >gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 5e-09
Identities = 36/110 (32%), Positives = 53/110 (48%), Gaps = 8/110 (7%)
Query: 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITL--SPVQAQRANALAAARGLADKVSFQVGD 216
P +V+D+GCG G +R L K+F + + I S +A + V F GD
Sbjct: 35 PASVLDIGCGTGYLTRALLKRF-PQAEFIANDISAGMLAQAKTKLSEN-----VQFICGD 88
Query: 217 ALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCH 266
A + P D FDL+ S + + D S+ +SELARV P G + T+
Sbjct: 89 AEKLPLEDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFGP 138
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240 |
| >gnl|CDD|226591 COG4106, Tam, Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 3e-08
Identities = 55/203 (27%), Positives = 85/203 (41%), Gaps = 33/203 (16%)
Query: 123 YEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-G 181
+ PD + D R R + ++ P +RP+ VVD+GCG G S+ LA+++
Sbjct: 3 WNPDQYLQFEDERTRPARDL--------LARVPLERPRRVVDLGCGPGNSTELLARRWPD 54
Query: 182 AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPD 241
A GI SP LA A +F+ D L+ P+ DL+++ + +PD
Sbjct: 55 AVITGIDSSP------AMLAKAAQRLPDATFEEAD-LRTWKPEQPTDLLFANAVLQWLPD 107
Query: 242 KSKFVSELARVTAPAGTIII------VTWCH---RDLAPSEESLQPWEQELLKKICDAYY 292
+ + L AP G + + H R+ A P+ QEL +
Sbjct: 108 HPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEA----PFAQELGGRGLTRAP 163
Query: 293 LPAWCSTADYVKLLQSLSLE-DI 314
LP S A Y +LL L+ DI
Sbjct: 164 LP---SPAAYYELLAPLACRVDI 183
|
Length = 257 |
| >gnl|CDD|235350 PRK05134, PRK05134, bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (130), Expect = 3e-08
Identities = 40/110 (36%), Positives = 57/110 (51%), Gaps = 14/110 (12%)
Query: 160 KNVVDVGCGIGGSSRYLAKKFGAKCQGITLS--PVQAQRANALAAARGLADKVSFQVGD- 216
K V+DVGCG G S +A+ GA GI S ++ R +AL + GL K+ ++
Sbjct: 50 KRVLDVGCGGGILSESMARL-GADVTGIDASEENIEVARLHALES--GL--KIDYRQTTA 104
Query: 217 ---ALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263
A + P GQFD+V ME EH+PD + FV A++ P G + T
Sbjct: 105 EELAAEHP---GQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFST 151
|
Length = 233 |
| >gnl|CDD|236059 PRK07580, PRK07580, Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 8e-07
Identities = 46/148 (31%), Positives = 69/148 (46%), Gaps = 20/148 (13%)
Query: 110 WEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGI 169
W I+ D P S V + RA RM + L + D T ++D GCG+
Sbjct: 25 WARIYSD-------APVSKVR-ATVRAGHQRMRDTVLSWLPADGDLT--GLRILDAGCGV 74
Query: 170 GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD--ALQQPFPDGQF 227
G S LA++ GAK +SP + A A GLA ++F+VGD +L G+F
Sbjct: 75 GSLSIPLARR-GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLL-----GRF 128
Query: 228 DLVWSMESGEHMP--DKSKFVSELARVT 253
D V ++ H P D ++ ++ LA +T
Sbjct: 129 DTVVCLDVLIHYPQEDAARMLAHLASLT 156
|
Length = 230 |
| >gnl|CDD|183282 PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 4e-06
Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 11/80 (13%)
Query: 161 NVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR--GLADKVSFQVGDAL 218
V+D+GCG GG +RY A+ +G G+T+S Q LA R GL V ++ D
Sbjct: 170 RVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQ----KLAQERCAGLP--VEIRLQDYR 223
Query: 219 QQPFPDGQFDLVWSMESGEH 238
+GQFD + S+ EH
Sbjct: 224 DL---NGQFDRIVSVGMFEH 240
|
Length = 383 |
| >gnl|CDD|131799 TIGR02752, MenG_heptapren, demethylmenaquinone methyltransferase | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 4e-06
Identities = 33/137 (24%), Positives = 55/137 (40%), Gaps = 12/137 (8%)
Query: 126 DSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG--AK 183
+S +S H+ + ++T++ V + +DV CG S LA+ G
Sbjct: 22 NSVISFQRHKKWR----KDTMKRMNVQAG-----TSALDVCCGTADWSIALAEAVGPEGH 72
Query: 184 CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKS 243
G+ S GL V G+A++ PF D FD V ++PD
Sbjct: 73 VIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMELPFDDNSFDYVTIGFGLRNVPDYM 131
Query: 244 KFVSELARVTAPAGTII 260
+ + E+ RV P G ++
Sbjct: 132 QVLREMYRVVKPGGKVV 148
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 231 |
| >gnl|CDD|177877 PLN02233, PLN02233, ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 1e-05
Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 7/134 (5%)
Query: 151 VSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGA--KCQGITLSPVQAQRANALAA--ARGL 206
VS K V+D+ CG G + L++K G+ K G+ S Q A + A+
Sbjct: 66 VSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSC 125
Query: 207 ADKVSFQVGDALQQPFPDGQFDLVWSMESG-EHMPDKSKFVSELARVTAPAGTIIIVTWC 265
+ + GDA PF D FD + +M G ++ D+ K + E+ RV P + I+ +
Sbjct: 126 YKNIEWIEGDATDLPFDDCYFDAI-TMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDF- 183
Query: 266 HRDLAPSEESLQPW 279
++ P S+Q W
Sbjct: 184 NKSTQPFTTSMQEW 197
|
Length = 261 |
| >gnl|CDD|110227 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 1e-05
Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 3/125 (2%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGA--KCQGITLSPVQAQRANALAAARGLADKVSFQV 214
KR +DV G G + L+ G+ K G+ ++ + A G + + F
Sbjct: 46 KRGNKFLDVAGGTGDWTFGLSDSAGSSGKVVGLDINENMLKEGEKKAKEEGKYN-IEFLQ 104
Query: 215 GDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEE 274
G+A + PF D FD+V + PD K + E RV P G ++ + + + +
Sbjct: 105 GNAEELPFEDDSFDIVTISFGLRNFPDYLKVLKEAFRVLKPGGRVVCLEFSKPENPLLSQ 164
Query: 275 SLQPW 279
+ + +
Sbjct: 165 AYELY 169
|
Length = 233 |
| >gnl|CDD|236467 PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 8e-05
Identities = 31/96 (32%), Positives = 43/96 (44%), Gaps = 19/96 (19%)
Query: 144 ETLRFAGVSEDPTKRPKNVVDVGCG---IGGSSRYLAKKF-GAKCQGITLSPVQAQRANA 199
E L + K P V+D+G G I + LAK+ A+ + +SP A
Sbjct: 94 EELVEWALEALLLKEPLRVLDLGTGSGAIALA---LAKERPDAEVTAVDISP------EA 144
Query: 200 LA-----AARGLADKVSFQVGDALQQPFPDGQFDLV 230
LA A GL +V F GD +P P G+FDL+
Sbjct: 145 LAVARRNAKHGLGARVEFLQGDWF-EPLPGGRFDLI 179
|
Length = 275 |
| >gnl|CDD|226608 COG4123, COG4123, Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 1e-04
Identities = 32/167 (19%), Positives = 54/167 (32%), Gaps = 41/167 (24%)
Query: 155 PTKRPKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQ 213
P + ++D+G G G LA++ AK G+ + A+ A A L +++
Sbjct: 41 PVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVI 100
Query: 214 VGD--ALQQPFPDGQFDLVWS----MESGEHM-PDKSKFVSELARVTA------------ 254
D + FDL+ + G + + + +AR
Sbjct: 101 EADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLR---AIARHEITLDLEDLIRAAA 157
Query: 255 ----PAGTIIIVTWCHRDLAPSEESLQPWEQEL------LKKICDAY 291
P G + V HR E L + L K+I Y
Sbjct: 158 KLLKPGGRLAFV---HR-----PERLAEIIELLKSYNLEPKRIQFVY 196
|
Length = 248 |
| >gnl|CDD|236841 PRK11088, rrmA, 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 2e-04
Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 17/109 (15%)
Query: 159 PKNVVDVGCGIG-GSSRY---LAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQV 214
++D+GCG G + L + + G+ +S V A + AA R +V+F V
Sbjct: 86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKV-AIKY---AAKR--YPQVTFCV 139
Query: 215 GDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263
+ + PF D D + + + P K ELARV P G +I VT
Sbjct: 140 ASSHRLPFADQSLDAIIRI----YAPCK---AEELARVVKPGGIVITVT 181
|
Length = 272 |
| >gnl|CDD|152582 pfam12147, Methyltransf_20, Putative methyltransferase | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 3e-04
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
Query: 142 IEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQG---ITL---SPVQAQ 195
+EE LR+A + RP ++D+ G G RY+ Q I L SP+ +
Sbjct: 119 LEELLRYAIARLRASGRPVRILDIAAGHG---RYVLDALAKAPQRPDSILLRDYSPLNVE 175
Query: 196 RANALAAARGLADKVSFQVGDA 217
+ AL A RGL D F+ GDA
Sbjct: 176 QGRALIAERGLEDIARFEQGDA 197
|
This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with pfam00561. The family shows homology to methyltransferases. Length = 311 |
| >gnl|CDD|225174 COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 4e-04
Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 14/102 (13%)
Query: 134 HRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSP-- 191
+ A ++ E L + ++ V+D+ CG+G LAK+ K G+ +SP
Sbjct: 274 NPAVAEKLYETALEWLELAGGER-----VLDLYCGVGTFGLPLAKRV-KKVHGVEISPEA 327
Query: 192 VQAQRANALAAARGLADKVSFQVGDA---LQQPFPDGQFDLV 230
V+A + N AAA G+ D V F GDA + + D+V
Sbjct: 328 VEAAQEN--AAANGI-DNVEFIAGDAEEFTPAWWEGYKPDVV 366
|
Length = 432 |
| >gnl|CDD|235607 PRK05785, PRK05785, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 7e-04
Identities = 29/96 (30%), Positives = 38/96 (39%), Gaps = 9/96 (9%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216
RPK V+DV G G S + K F + + N L DKV VG
Sbjct: 50 GRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAE------NMLKMNLVADDKV---VGS 100
Query: 217 ALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARV 252
PF D FD+V S + + K ++E RV
Sbjct: 101 FEALPFRDKSFDVVMSSFALHASDNIEKVIAEFTRV 136
|
Length = 226 |
| >gnl|CDD|234248 TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.001
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 13/80 (16%)
Query: 157 KRPKNVVDVGCG---IGGSSRYLAKKF-GAKCQGITLSP--VQAQRANALAAARGLADKV 210
K P V+D+G G I + LAK+ A+ + +SP + R N AAR D V
Sbjct: 86 KGPLRVLDLGTGSGAIALA---LAKERPDARVTAVDISPEALAVARKN---AARLGLDNV 139
Query: 211 SFQVGDALQQPFPDGQFDLV 230
F D +P P G+FDL+
Sbjct: 140 EFLQSDWF-EPLPGGKFDLI 158
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3 [Protein fate, Protein modification and repair]. Length = 251 |
| >gnl|CDD|226607 COG4122, COG4122, Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.002
Identities = 37/171 (21%), Positives = 71/171 (41%), Gaps = 28/171 (16%)
Query: 107 SSLWEDIWGDHMH-HGFYEPDSSVSVSDHRAAQV---RMIEETLRF----AGVSEDPTKR 158
++ ED++ D++ EP + ++ + A + + ET A
Sbjct: 6 PNMDEDLY-DYLEALIPGEPPALLAELEEFARENGVPIIDPETGALLRLLAR-----LSG 59
Query: 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITL--SPVQAQRANALAAARGLADKVSFQV-G 215
PK ++++G IG S+ ++A + T+ +A+ A A G+ D++ + G
Sbjct: 60 PKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGG 119
Query: 216 DALQQ--PFPDGQFDLVWSMESGEHMPDKSK---FVSELARVTAPAGTIII 261
DAL DG FDLV+ + DK+ ++ + P G I+
Sbjct: 120 DALDVLSRLLDGSFDLVF----IDA--DKADYPEYLERALPLLRPGGLIVA 164
|
Length = 219 |
| >gnl|CDD|222313 pfam13679, Methyltransf_32, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 0.002
Identities = 21/82 (25%), Positives = 28/82 (34%), Gaps = 8/82 (9%)
Query: 157 KRPKNVVDVGCGIGGSSR---YLAKKFGAKCQ--GITLSPVQAQRANALAAARGLADKVS 211
VVD G G G YL K + GI ++ANA A G ++S
Sbjct: 24 TGCITVVDHGAGKGYLGFILYYLLFKRKYGVRVVGIDARAELVEKANARAQKLGFNKRMS 83
Query: 212 F---QVGDALQQPFPDGQFDLV 230
F + A D+V
Sbjct: 84 FLEGTIAGATVSARLPDPVDVV 105
|
This family appears to be a methyltransferase domain. Length = 143 |
| >gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 0.002
Identities = 28/125 (22%), Positives = 48/125 (38%), Gaps = 24/125 (19%)
Query: 160 KNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLAD-KVSFQVGDAL 218
V++VG G G + AK G K G+ ++P + A A + + V D L
Sbjct: 25 DRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSD-L 82
Query: 219 QQPFPDGQFDLV-----WSMESGEHMPDK----------------SKFVSELARVTAPAG 257
+PF +FD++ + E D +F+ E+ R P G
Sbjct: 83 FEPFRGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGG 142
Query: 258 TIIIV 262
I+++
Sbjct: 143 RILLL 147
|
Length = 188 |
| >gnl|CDD|178018 PLN02396, PLN02396, hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Score = 38.9 bits (90), Expect = 0.003
Identities = 55/245 (22%), Positives = 101/245 (41%), Gaps = 40/245 (16%)
Query: 32 KRLSDIQSEMSACL---RPSLLPAPPPAPTWRSSLLFGVSSFSRKLITRASSTTSTTTMS 88
+RLS + + L R + SS + + K ++ ST++TT+++
Sbjct: 18 RRLSSSRIIPPSRLLHQRLFSTSDTDDSAASFSSSHPKMQTLEGKASNKSRSTSTTTSLN 77
Query: 89 DAAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRF 148
++ +A+F + + W G ++P + ++ I TL
Sbjct: 78 -------EDELAKFSAIADTWWHS-------EGPFKP-----LHQMNPTRLAFIRSTL-C 117
Query: 149 AGVSEDPT-KRP---KNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR 204
S+DP+ +P +D+GCG G S LA+ G T++ V A N + AR
Sbjct: 118 RHFSKDPSSAKPFEGLKFIDIGCGGGLLSEPLAR------MGATVTGVDAVDKN-VKIAR 170
Query: 205 GLAD------KVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGT 258
AD + + A + +FD V S+E EH+ + ++F L+ +T P G
Sbjct: 171 LHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEHVANPAEFCKSLSALTIPNGA 230
Query: 259 IIIVT 263
++ T
Sbjct: 231 TVLST 235
|
Length = 322 |
| >gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain | Back alignment and domain information |
|---|
Score = 37.5 bits (88), Expect = 0.003
Identities = 19/81 (23%), Positives = 29/81 (35%), Gaps = 11/81 (13%)
Query: 155 PTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARG-----LADK 209
P V+D+GCG G L + + ++ V A AL +AR +
Sbjct: 28 PKPLGGKVLDLGCGYG----VLGAALAKRSPDLEVTMVDIN-ARALESARANLAANGLEN 82
Query: 210 VSFQVGDALQQPFPDGQFDLV 230
D G+FDL+
Sbjct: 83 GEVFWSDLYSAV-EPGKFDLI 102
|
This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases . Length = 170 |
| >gnl|CDD|215270 PLN02490, PLN02490, MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Score = 38.7 bits (90), Expect = 0.003
Identities = 56/195 (28%), Positives = 73/195 (37%), Gaps = 37/195 (18%)
Query: 162 VVDVGCGIGGSSRYLAKKFGAKCQGITL---SPVQAQRANALAAARGLADKVSFQVGDAL 218
VVDVG G G ++ + K AK +T+ SP Q +A + GDA
Sbjct: 117 VVDVGGGTGFTTLGIVKHVDAK--NVTILDQSPHQLAKAKQKEPLKE----CKIIEGDAE 170
Query: 219 QQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT------WCHRDLA-- 270
PFP D S S E+ PD + + E RV G ++ W R A
Sbjct: 171 DLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADV 230
Query: 271 ----PSEESLQPWEQEL------LKKICDAYY-------LPAWCSTADYVKLLQSLSLED 313
P EE W + LK+I +Y L CS VK S
Sbjct: 231 WMLFPKEEEYIEWFTKAGFKDVKLKRIGPKWYRGVRRHGLIMGCSVTG-VKPASGDSPLQ 289
Query: 314 I--KAEDWSQNVAPF 326
+ KAED S+ V PF
Sbjct: 290 LGPKAEDVSKPVNPF 304
|
Length = 340 |
| >gnl|CDD|184509 PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.004
Identities = 43/146 (29%), Positives = 67/146 (45%), Gaps = 34/146 (23%)
Query: 123 YEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-G 181
++PD ++ +DHR R + L + +R + VVD+GCG G +RYLA+++ G
Sbjct: 2 WDPDVYLAFADHRG---RPFYDLL-----ARVGAERARRVVDLGCGPGNLTRYLARRWPG 53
Query: 182 AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-QPFPDGQFDLV-------WSM 233
A + + SP +AAAR V + GD +P PD D+V W
Sbjct: 54 AVIEALDSSP------EMVAAARE--RGVDARTGDVRDWKPKPD--TDVVVSNAALQWVP 103
Query: 234 ESGEHMPDKSKFVSELARVTAPAGTI 259
E + + ++V EL AP I
Sbjct: 104 EHADLLV---RWVDEL----APGSWI 122
|
Length = 255 |
| >gnl|CDD|223109 COG0030, KsgA, Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 0.004
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 10/90 (11%)
Query: 142 IEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALA 201
I++ + A +S NV+++G G+G + L ++ A+ I + + A L
Sbjct: 19 IDKIVEAANISPG-----DNVLEIGPGLGALTEPLLER-AARVTAIEIDR---RLAEVLK 69
Query: 202 AARGLADKVSFQVGDALQQPFPD-GQFDLV 230
D ++ GDAL+ FP Q V
Sbjct: 70 ERFAPYDNLTVINGDALKFDFPSLAQPYKV 99
|
Length = 259 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 371 | |||
| PLN02244 | 340 | tocopherol O-methyltransferase | 100.0 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.96 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.96 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.95 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.94 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.92 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.92 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.9 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.89 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.89 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.89 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.87 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.86 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.85 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.85 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.85 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.84 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.84 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.84 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.83 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.83 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.82 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.82 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.82 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.81 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.8 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.8 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.8 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.79 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.79 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.79 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.78 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.78 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.78 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.77 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.76 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.76 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.75 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.74 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.73 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.73 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.73 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.72 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.71 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.71 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.7 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.7 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.69 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.66 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.66 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.65 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.65 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.65 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.65 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.64 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.64 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.63 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.63 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.63 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.62 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.62 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.61 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.61 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.61 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.6 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.59 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.59 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.59 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.59 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.58 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.58 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.58 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.58 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.57 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.57 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.56 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.56 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.54 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.53 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.53 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.52 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.52 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.52 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.52 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.51 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.5 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.5 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.5 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.49 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.48 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.48 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.48 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.47 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.47 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.47 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.46 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.46 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.46 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 99.45 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.45 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.45 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.44 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.44 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.42 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 99.42 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.42 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.42 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 99.42 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.41 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.41 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 99.41 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.4 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 99.39 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.39 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.39 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.35 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 99.35 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.33 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.33 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.32 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 99.31 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.31 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 99.3 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.3 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.3 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 99.29 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.29 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.29 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.29 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 99.27 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.25 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 99.25 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.24 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.24 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.23 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.23 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.23 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.23 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 99.2 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.2 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 99.19 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 99.18 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 99.17 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.17 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.16 | |
| PLN02476 | 278 | O-methyltransferase | 99.16 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.15 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 99.12 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 99.1 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 99.09 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 99.09 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 99.08 | |
| PLN02366 | 308 | spermidine synthase | 99.07 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 99.06 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 99.06 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 99.05 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.05 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 99.04 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 99.01 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 99.0 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.99 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.99 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 98.98 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.97 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.96 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 98.94 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.93 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.92 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.9 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.89 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.87 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.87 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 98.87 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.86 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.86 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.85 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.84 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.81 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.8 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 98.8 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 98.8 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.8 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.77 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 98.75 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.75 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 98.72 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 98.71 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 98.7 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.7 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.69 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 98.67 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 98.66 | |
| PLN02823 | 336 | spermine synthase | 98.66 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.65 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.65 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 98.65 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 98.65 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 98.64 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 98.64 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 98.59 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 98.58 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 98.56 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.55 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 98.54 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 98.52 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 98.51 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.47 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.47 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.46 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 98.44 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.41 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.4 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 98.4 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.4 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.4 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.4 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.38 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 98.34 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 98.33 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 98.32 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 98.32 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 98.31 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.29 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 98.24 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 98.21 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 98.21 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 98.21 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 98.2 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.2 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 98.2 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 98.2 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 98.19 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 98.19 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 98.15 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 98.06 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 98.06 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 98.01 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 98.0 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 97.99 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 97.97 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 97.93 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 97.9 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 97.88 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 97.87 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 97.82 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 97.82 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 97.79 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 97.69 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 97.66 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 97.65 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 97.65 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 97.63 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 97.59 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 97.54 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 97.5 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 97.47 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 97.44 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 97.42 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 97.37 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 97.36 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 97.32 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 97.32 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 97.29 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 97.22 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 97.12 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 97.07 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 97.06 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 97.05 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 96.87 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 96.67 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 96.66 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 96.65 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 96.56 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 96.55 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 96.5 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 96.47 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 96.42 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 96.38 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 96.32 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 96.26 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 96.05 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 96.03 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 95.96 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 95.91 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 95.9 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 95.83 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 95.81 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 95.66 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 95.48 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 95.44 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 95.31 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 95.15 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 95.14 | |
| PRK13699 | 227 | putative methylase; Provisional | 95.12 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 95.11 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 95.04 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 94.98 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 94.91 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 94.85 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 94.84 | |
| PHA01634 | 156 | hypothetical protein | 94.77 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 94.76 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 94.66 | |
| PRK13699 | 227 | putative methylase; Provisional | 94.29 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 94.19 | |
| PF11312 | 315 | DUF3115: Protein of unknown function (DUF3115); In | 94.09 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 94.01 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 93.98 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 93.91 | |
| COG3315 | 297 | O-Methyltransferase involved in polyketide biosynt | 93.85 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 93.76 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 93.76 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 93.57 | |
| KOG2539 | 491 | consensus Mitochondrial/chloroplast ribosome small | 93.41 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 93.38 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 93.3 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 93.17 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 93.17 | |
| PF03514 | 374 | GRAS: GRAS domain family; InterPro: IPR005202 Sequ | 93.12 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 92.94 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 92.85 | |
| PF07279 | 218 | DUF1442: Protein of unknown function (DUF1442); In | 92.84 | |
| KOG2918 | 335 | consensus Carboxymethyl transferase [Posttranslati | 92.7 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 92.66 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 92.65 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 92.57 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 92.32 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 92.16 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 92.05 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 91.57 | |
| KOG1098 | 780 | consensus Putative SAM-dependent rRNA methyltransf | 91.4 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 91.19 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 91.18 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 90.93 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 90.8 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 90.63 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 90.61 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 90.6 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 90.58 | |
| PF05430 | 124 | Methyltransf_30: S-adenosyl-L-methionine-dependent | 90.48 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 90.25 | |
| COG4017 | 254 | Uncharacterized protein conserved in archaea [Func | 89.93 | |
| cd08234 | 334 | threonine_DH_like L-threonine dehydrogenase. L-thr | 89.93 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 89.42 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 89.37 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 89.35 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 89.18 | |
| KOG2078 | 495 | consensus tRNA modification enzyme [RNA processing | 89.08 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 89.07 | |
| cd08245 | 330 | CAD Cinnamyl alcohol dehydrogenases (CAD) and rela | 88.95 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 88.74 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 88.46 | |
| TIGR02818 | 368 | adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr | 88.44 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 88.28 | |
| cd08261 | 337 | Zn_ADH7 Alcohol dehydrogenases of the MDR family. | 88.0 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 87.87 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 87.86 | |
| PLN02494 | 477 | adenosylhomocysteinase | 87.86 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 87.82 | |
| PF03686 | 127 | UPF0146: Uncharacterised protein family (UPF0146); | 87.71 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 87.66 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 87.48 | |
| cd05285 | 343 | sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a | 87.38 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 87.35 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 87.32 | |
| cd05278 | 347 | FDH_like Formaldehyde dehydrogenases. Formaldehyde | 87.23 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 87.17 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 87.16 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 86.79 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 86.66 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 86.65 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 86.27 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 85.96 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 85.92 | |
| TIGR00497 | 501 | hsdM type I restriction system adenine methylase ( | 85.82 | |
| COG2933 | 358 | Predicted SAM-dependent methyltransferase [General | 85.81 | |
| cd08300 | 368 | alcohol_DH_class_III class III alcohol dehydrogena | 85.8 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 85.79 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 85.75 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 85.69 | |
| cd08236 | 343 | sugar_DH NAD(P)-dependent sugar dehydrogenases. Th | 85.64 | |
| cd08242 | 319 | MDR_like Medium chain dehydrogenases/reductase (MD | 85.41 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 85.34 | |
| TIGR02819 | 393 | fdhA_non_GSH formaldehyde dehydrogenase, glutathio | 85.09 | |
| COG1255 | 129 | Uncharacterized protein conserved in archaea [Func | 84.97 | |
| PLN02178 | 375 | cinnamyl-alcohol dehydrogenase | 84.71 | |
| cd08285 | 351 | NADP_ADH NADP(H)-dependent alcohol dehydrogenases. | 84.71 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 84.67 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 84.41 | |
| cd08277 | 365 | liver_alcohol_DH_like Liver alcohol dehydrogenase. | 84.31 | |
| cd08238 | 410 | sorbose_phosphate_red L-sorbose-1-phosphate reduct | 83.85 | |
| cd08231 | 361 | MDR_TM0436_like Hypothetical enzyme TM0436 resembl | 83.48 | |
| PF05206 | 259 | TRM13: Methyltransferase TRM13; InterPro: IPR00787 | 83.48 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 83.43 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 83.37 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 83.2 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 83.1 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 82.9 | |
| cd08298 | 329 | CAD2 Cinnamyl alcohol dehydrogenases (CAD). These | 82.88 | |
| PLN02514 | 357 | cinnamyl-alcohol dehydrogenase | 82.18 | |
| COG1086 | 588 | Predicted nucleoside-diphosphate sugar epimerases | 82.15 | |
| PF02719 | 293 | Polysacc_synt_2: Polysaccharide biosynthesis prote | 82.11 | |
| cd08301 | 369 | alcohol_DH_plants Plant alcohol dehydrogenase. NAD | 82.0 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 81.95 | |
| cd05281 | 341 | TDH Threonine dehydrogenase. L-threonine dehydroge | 81.79 | |
| cd08296 | 333 | CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci | 81.55 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 81.54 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 80.93 | |
| cd08233 | 351 | butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog | 80.83 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 80.44 |
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=291.57 Aligned_cols=280 Identities=70% Similarity=1.166 Sum_probs=243.5
Q ss_pred hHHHHHHHHHHHHhcccchhhHhhhcccccccccCCCCCcCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCc
Q 017428 90 AAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGI 169 (371)
Q Consensus 90 ~~~~~~~~~i~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~Gt 169 (371)
.....+.+.|..|||..+..|+.+|+.++|.|||..+. ........+.+++..++..+.+......++.+|||||||+
T Consensus 52 ~~~~~~~~~i~~~Yd~~~~~~e~~~g~~~h~g~~~~~~--~~~~~~~aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~ 129 (340)
T PLN02244 52 AATADLKEGIAEFYDESSGVWEDVWGEHMHHGYYDPGA--SRGDHRQAQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGI 129 (340)
T ss_pred cchhhHHHHHHHHHccchHHHHHHhCCcceeeccCCCC--CcccHHHHHHHHHHHHHHhcCCCcccCCCCCeEEEecCCC
Confidence 34577888999999999999999999999999998653 2234788888999999998877322223578999999999
Q ss_pred ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccCcCCHHHHHHHH
Q 017428 170 GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSEL 249 (371)
Q Consensus 170 G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~ 249 (371)
|.++..+++.++++|+|+|+|+.|++.++++.+..++.+++.|+++|+.++++++++||+|++..+++|++|...+++++
T Consensus 130 G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~h~~d~~~~l~e~ 209 (340)
T PLN02244 130 GGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESGEHMPDKRKFVQEL 209 (340)
T ss_pred CHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCchhccCCHHHHHHHH
Confidence 99999999987889999999999999999999888887889999999999999999999999999999999999999999
Q ss_pred HHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEEEecCCcccCccHH
Q 017428 250 ARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPA 329 (371)
Q Consensus 250 ~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~~~~~~~~~~ 329 (371)
+++|||||++++.+++.....+....+.......+..+...+..+.+.+.+++.++++++||+++++++|+..+.+.|..
T Consensus 210 ~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~v~~~d~s~~v~~~~~~ 289 (340)
T PLN02244 210 ARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQDIKTEDWSEHVAPFWPA 289 (340)
T ss_pred HHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCCeeEeeeCcHHHHHHHHH
Confidence 99999999999999876554444444554555556666666677778899999999999999999999999999999999
Q ss_pred HHHhhhcHHHHHHHHHhhcccchhHhHHHHHHHHcccccCCC
Q 017428 330 VIHSALTWKGFTSLLRTEIFTGRKVLLCNHIEEDFPNALSGS 371 (371)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 371 (371)
.......+.++.+.+..+|+.+++...+.+|..+|+.|+++.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~ 331 (340)
T PLN02244 290 VIKSALTLKGLFGLLTSGWATIRGALVMPLMIKGFKKGLIKF 331 (340)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCcee
Confidence 888888899999999999999999988899999999999863
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-28 Score=221.34 Aligned_cols=257 Identities=25% Similarity=0.355 Sum_probs=173.4
Q ss_pred HHHHHHHHHhcccchhhHhhhcccccc--cccCCCCCcCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcCh
Q 017428 94 ELKEGIAEFYDESSSLWEDIWGDHMHH--GFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGG 171 (371)
Q Consensus 94 ~~~~~i~~~yd~~~~~y~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~ 171 (371)
...++|..|||..+++|..++++.+++ ++|..+.+. +.+++.++++.+++++.+++ +.+|||||||+|.
T Consensus 5 ~~~~~i~~hYDl~ndfy~l~Ld~~m~YS~~~~~~~~~~----Le~AQ~~k~~~~~~~~~l~~-----G~~vLDiGcGwG~ 75 (273)
T PF02353_consen 5 QSRENISAHYDLGNDFYRLFLDPTMKYSCAYFDEGDDT----LEEAQERKLDLLCEKLGLKP-----GDRVLDIGCGWGG 75 (273)
T ss_dssp --HHHHHHHHTS-HHHHTTTS-TT---S----SSTT------HHHHHHHHHHHHHTTTT--T-----T-EEEEES-TTSH
T ss_pred hHHHHHHHHcCCcHHHHHHhcCCCCCCCCeecCCchhh----HHHHHHHHHHHHHHHhCCCC-----CCEEEEeCCCccH
Confidence 345679999999999999999998886 588875433 78999999999999999886 9999999999999
Q ss_pred HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccCc--CCHHHHHHHH
Q 017428 172 SSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHM--PDKSKFVSEL 249 (371)
Q Consensus 172 ~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~--~~~~~~l~~~ 249 (371)
+++.++++++++|+|+++|++|.+.++++++..|+.+++.+...|..+++ .+||.|++..+++|+ .+...+++++
T Consensus 76 ~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~---~~fD~IvSi~~~Ehvg~~~~~~~f~~~ 152 (273)
T PF02353_consen 76 LAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP---GKFDRIVSIEMFEHVGRKNYPAFFRKI 152 (273)
T ss_dssp HHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------S-SEEEEESEGGGTCGGGHHHHHHHH
T ss_pred HHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC---CCCCEEEEEechhhcChhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998865 389999999999999 5679999999
Q ss_pred HHhcCCCcEEEEEeccCCCCCcCcccc--ChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEEEecCCcccCcc
Q 017428 250 ARVTAPAGTIIIVTWCHRDLAPSEESL--QPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFW 327 (371)
Q Consensus 250 ~~~LkpgG~l~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~~~~~~~~ 327 (371)
.++|||||.+++..++..........- ..+ +-..++++... .+.+++...++++||++++++.+..++....
T Consensus 153 ~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~---i~kyiFPgg~l---ps~~~~~~~~~~~~l~v~~~~~~~~hY~~Tl 226 (273)
T PF02353_consen 153 SRLLKPGGRLVLQTITHRDPPYHAERRSSSDF---IRKYIFPGGYL---PSLSEILRAAEDAGLEVEDVENLGRHYARTL 226 (273)
T ss_dssp HHHSETTEEEEEEEEEE--HHHHHCTTCCCHH---HHHHTSTTS------BHHHHHHHHHHTT-EEEEEEE-HHHHHHHH
T ss_pred HHhcCCCcEEEEEecccccccchhhcCCCceE---EEEeeCCCCCC---CCHHHHHHHHhcCCEEEEEEEEcCcCHHHHH
Confidence 999999999999876554322111000 111 12223333333 4788999999999999999998877765443
Q ss_pred HHHHHhh-hcHHHHHHHHHhhcccchhHhHHHHHHHHcccccC
Q 017428 328 PAVIHSA-LTWKGFTSLLRTEIFTGRKVLLCNHIEEDFPNALS 369 (371)
Q Consensus 328 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 369 (371)
....+.. ..+..+..+ -..--.-.....+..+..+|+.|.+
T Consensus 227 ~~W~~~f~~~~~~i~~~-~~~~f~r~w~~yl~~~~~~F~~g~~ 268 (273)
T PF02353_consen 227 RAWRENFDANREEIIAL-FDEEFYRMWRYYLAYCAAGFRAGSI 268 (273)
T ss_dssp HHHHHHHHHTHHHHHHH-SHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHCCCC
Confidence 3332211 122222222 1111112355567777788888765
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-27 Score=210.91 Aligned_cols=256 Identities=22% Similarity=0.259 Sum_probs=194.4
Q ss_pred HHHHHHHHHhcccchhhHhhhcccccc--cccCCCCCcCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcCh
Q 017428 94 ELKEGIAEFYDESSSLWEDIWGDHMHH--GFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGG 171 (371)
Q Consensus 94 ~~~~~i~~~yd~~~~~y~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~ 171 (371)
.-.+++..|||..+++|..++++.+.+ .||+.+.. .+.+++...++.+++++.+++ +++|||||||+|.
T Consensus 15 ~~~~~i~~HYDl~n~fy~l~Ld~~~~Yscayf~~~~~----tL~eAQ~~k~~~~~~kl~L~~-----G~~lLDiGCGWG~ 85 (283)
T COG2230 15 RAAENIQAHYDLSNDFYRLFLDPSMTYSCAYFEDPDM----TLEEAQRAKLDLILEKLGLKP-----GMTLLDIGCGWGG 85 (283)
T ss_pred chhhhhhhHhhcchHHHHHhcCCCCceeeEEeCCCCC----ChHHHHHHHHHHHHHhcCCCC-----CCEEEEeCCChhH
Confidence 445679999999999999999998764 68876654 278899999999999999987 9999999999999
Q ss_pred HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccCcCC--HHHHHHHH
Q 017428 172 SSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPD--KSKFVSEL 249 (371)
Q Consensus 172 ~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~--~~~~l~~~ 249 (371)
+++.++++++.+|+|+++|++|.+.+++++...|+..++++...|..+.. +.||.|++..+++|+.. ...+|+.+
T Consensus 86 l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~---e~fDrIvSvgmfEhvg~~~~~~ff~~~ 162 (283)
T COG2230 86 LAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE---EPFDRIVSVGMFEHVGKENYDDFFKKV 162 (283)
T ss_pred HHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc---cccceeeehhhHHHhCcccHHHHHHHH
Confidence 99999999999999999999999999999999999889999999998875 45999999999999965 89999999
Q ss_pred HHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEEEecCCcccCccHH
Q 017428 250 ARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPA 329 (371)
Q Consensus 250 ~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~~~~~~~~~~ 329 (371)
+++|+|||.+++........... ... ..+...+.++...| +..++.+..+++||++.+.+.+..+.......
T Consensus 163 ~~~L~~~G~~llh~I~~~~~~~~--~~~---~~i~~yiFPgG~lP---s~~~i~~~~~~~~~~v~~~~~~~~hYa~Tl~~ 234 (283)
T COG2230 163 YALLKPGGRMLLHSITGPDQEFR--RFP---DFIDKYIFPGGELP---SISEILELASEAGFVVLDVESLRPHYARTLRL 234 (283)
T ss_pred HhhcCCCceEEEEEecCCCcccc--cch---HHHHHhCCCCCcCC---CHHHHHHHHHhcCcEEehHhhhcHHHHHHHHH
Confidence 99999999999988765543221 111 22233344545444 78999999999999999988777765433222
Q ss_pred HHHhhhcHHHHHHHHHhhcccchhHhHHHHHHHHcccccC
Q 017428 330 VIHSALTWKGFTSLLRTEIFTGRKVLLCNHIEEDFPNALS 369 (371)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 369 (371)
..+....-.+-...+-..-........+..+..+|+.|.+
T Consensus 235 W~~~f~~~~~~a~~~~~e~~~r~w~~yl~~~~~~Fr~~~~ 274 (283)
T COG2230 235 WRERFEANRDEAIALYDERFYRMWELYLAACAAAFRAGYI 274 (283)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccCCc
Confidence 2222222111111111222222344456666667777654
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.7e-27 Score=206.24 Aligned_cols=207 Identities=22% Similarity=0.362 Sum_probs=158.5
Q ss_pred ChhHHHHHHHHHHHHhcccchhhHhhhcccccccccCCCCCcCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECC
Q 017428 88 SDAAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGC 167 (371)
Q Consensus 88 ~~~~~~~~~~~i~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~ 167 (371)
+...++.++++++..||..++... ....+.+.+. ++..+.+. ++.+||||||
T Consensus 9 k~~~v~~vF~~ia~~YD~~n~~~S-------------------~g~~~~Wr~~----~i~~~~~~-----~g~~vLDva~ 60 (238)
T COG2226 9 KQEKVQKVFDKVAKKYDLMNDLMS-------------------FGLHRLWRRA----LISLLGIK-----PGDKVLDVAC 60 (238)
T ss_pred cHHHHHHHHHhhHHHHHhhccccc-------------------CcchHHHHHH----HHHhhCCC-----CCCEEEEecC
Confidence 346789999999999998775522 1113333333 33444443 3899999999
Q ss_pred CcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccCcCCHHHHH
Q 017428 168 GIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFV 246 (371)
Q Consensus 168 GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l 246 (371)
|||.++..+++.. .++|+|+|+|+.|++.|++++...++.. ++|+++|++++||++++||+|.+.++|++++|++.+|
T Consensus 61 GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL 139 (238)
T COG2226 61 GTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKAL 139 (238)
T ss_pred CccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhCCCCCCccCEEEeeehhhcCCCHHHHH
Confidence 9999999999987 5799999999999999999999887754 9999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHH-HHHHHhhccC------------CCCCCCHHHHHHHHHhCCCce
Q 017428 247 SELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQE-LLKKICDAYY------------LPAWCSTADYVKLLQSLSLED 313 (371)
Q Consensus 247 ~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~------------~~~~~~~~~~~~ll~~aGF~~ 313 (371)
++++|+|||||++++.++..+........+..+... .+..+..... ...+.+.+++.++++++||..
T Consensus 140 ~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~gf~~ 219 (238)
T COG2226 140 KEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAGFEE 219 (238)
T ss_pred HHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcCceE
Confidence 999999999999999998776544333333323322 2211111111 113568999999999999999
Q ss_pred EEEEecCCcc
Q 017428 314 IKAEDWSQNV 323 (371)
Q Consensus 314 v~~~~~~~~~ 323 (371)
+..+.+...+
T Consensus 220 i~~~~~~~G~ 229 (238)
T COG2226 220 VRYENLTFGI 229 (238)
T ss_pred EeeEeeeeee
Confidence 8866655544
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-27 Score=209.18 Aligned_cols=207 Identities=24% Similarity=0.398 Sum_probs=93.6
Q ss_pred ChhHHHHHHHHHHHHhcccchhhHhhhcccccccccCCCCCcCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECC
Q 017428 88 SDAAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGC 167 (371)
Q Consensus 88 ~~~~~~~~~~~i~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~ 167 (371)
+.+.++.+++.|+..||..++....- . .+.+.+ .+++.+... ++.+|||+||
T Consensus 5 k~~~v~~~Fd~ia~~YD~~n~~ls~g--~-----------------~~~wr~----~~~~~~~~~-----~g~~vLDv~~ 56 (233)
T PF01209_consen 5 KEQYVRKMFDRIAPRYDRMNDLLSFG--Q-----------------DRRWRR----KLIKLLGLR-----PGDRVLDVAC 56 (233)
T ss_dssp ---------------------------------------------------S----HHHHHHT-------S--EEEEET-
T ss_pred HHHHHHHHHHHHHHHhCCCccccCCc--H-----------------HHHHHH----HHHhccCCC-----CCCEEEEeCC
Confidence 34557888999999999776653211 0 111222 223333333 3889999999
Q ss_pred CcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccCcCCHHHH
Q 017428 168 GIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKF 245 (371)
Q Consensus 168 GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~ 245 (371)
|||.++..+++.. ..+|+|+|+|+.|++.|+++....+.. +++++++|++++|+++++||+|++.+.+++++|+.++
T Consensus 57 GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~~~ 135 (233)
T PF01209_consen 57 GTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRERA 135 (233)
T ss_dssp TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SSHHHH
T ss_pred ChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCHHHH
Confidence 9999999999876 469999999999999999999988764 8999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHH-------HHHHHHhhcc-----CCCCCCCHHHHHHHHHhCCCce
Q 017428 246 VSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQ-------ELLKKICDAY-----YLPAWCSTADYVKLLQSLSLED 313 (371)
Q Consensus 246 l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~-----~~~~~~~~~~~~~ll~~aGF~~ 313 (371)
+++++|+|||||++++.+++.+........+.-+.. .++......+ ....+.+.+++.++|+++||+.
T Consensus 136 l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~~~~~~~l~~~Gf~~ 215 (233)
T PF01209_consen 136 LREMYRVLKPGGRLVILEFSKPRNPLLRALYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPSPEELKELLEEAGFKN 215 (233)
T ss_dssp HHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHHH-----------------------------------------------
T ss_pred HHHHHHHcCCCeEEEEeeccCCCCchhhceeeeeeccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999876543211111110110 0111000111 1123568999999999999999
Q ss_pred EEEEecCCcc
Q 017428 314 IKAEDWSQNV 323 (371)
Q Consensus 314 v~~~~~~~~~ 323 (371)
++.+.+.-.+
T Consensus 216 v~~~~~~~G~ 225 (233)
T PF01209_consen 216 VEYRPLTFGI 225 (233)
T ss_dssp ----------
T ss_pred cccccccccc
Confidence 9877665544
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.6e-24 Score=191.64 Aligned_cols=163 Identities=21% Similarity=0.314 Sum_probs=124.1
Q ss_pred CCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHH--cCCCCCeEEEEcCCCCCCCCCCccceEEccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAA--RGLADKVSFQVGDALQQPFPDGQFDLVWSME 234 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~--~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~ 234 (371)
+.+|||+|||+|.++..+++.+ ..+|+|+|+|+.|++.|+++... .....++.++++|++++|+++++||+|++..
T Consensus 74 ~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~ 153 (261)
T PLN02233 74 GDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGY 153 (261)
T ss_pred CCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEec
Confidence 7899999999999999998875 36899999999999999887542 2223579999999999999999999999999
Q ss_pred cccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHH-HHHHhhcc-----------CCCCCCCHHHH
Q 017428 235 SGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQEL-LKKICDAY-----------YLPAWCSTADY 302 (371)
Q Consensus 235 ~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----------~~~~~~~~~~~ 302 (371)
+++|++++..++++++|+|||||.+++.++..+.... ...+..+.... +......+ ....+.+++++
T Consensus 154 ~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f~s~~el 232 (261)
T PLN02233 154 GLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQPF-TTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSINEYLTGEEL 232 (261)
T ss_pred ccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCCcHH-HHHHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHhcCCHHHH
Confidence 9999999999999999999999999999987543211 11111111000 00000000 11236799999
Q ss_pred HHHHHhCCCceEEEEecCCc
Q 017428 303 VKLLQSLSLEDIKAEDWSQN 322 (371)
Q Consensus 303 ~~ll~~aGF~~v~~~~~~~~ 322 (371)
.++|+++||+++....+...
T Consensus 233 ~~ll~~aGF~~~~~~~~~~g 252 (261)
T PLN02233 233 EKLALEAGFSSAKHYEISGG 252 (261)
T ss_pred HHHHHHCCCCEEEEEEcCCC
Confidence 99999999999987765443
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.3e-24 Score=181.27 Aligned_cols=211 Identities=17% Similarity=0.258 Sum_probs=156.3
Q ss_pred ccCCCCCChhHHHHHHHHHHHHhcccchhhHhhhcccccccccCCCCCcCcchHHHHHHHHHHH-HHHHcCCCCCCCCCC
Q 017428 81 TTSTTTMSDAAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEE-TLRFAGVSEDPTKRP 159 (371)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~i~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~ 159 (371)
.+..++..+..+..++++++.+||..++.-. --.+++.+. .+.++... ++
T Consensus 51 ~tV~e~eke~~V~~vF~~vA~~YD~mND~mS------------------------lGiHRlWKd~~v~~L~p~-----~~ 101 (296)
T KOG1540|consen 51 KTVRESEKERLVHHVFESVAKKYDIMNDAMS------------------------LGIHRLWKDMFVSKLGPG-----KG 101 (296)
T ss_pred cccchhhhhhHHHHHHHHHHHHHHHHHHHhh------------------------cchhHHHHHHhhhccCCC-----CC
Confidence 3444455566789999999999998766522 112222222 23444433 37
Q ss_pred CEEEEECCCcChHHHHHHHHc-C------CEEEEEeCCHHHHHHHHHHHHHcCCCCC--eEEEEcCCCCCCCCCCccceE
Q 017428 160 KNVVDVGCGIGGSSRYLAKKF-G------AKCQGITLSPVQAQRANALAAARGLADK--VSFQVGDALQQPFPDGQFDLV 230 (371)
Q Consensus 160 ~~VLDlG~GtG~~~~~l~~~~-~------~~v~gvD~s~~~~~~a~~~~~~~~~~~~--v~~~~~d~~~~~~~~~~fD~v 230 (371)
++|||++||||..+..+.+.. . .+|+++|++++|+..++++..+.++..+ +.|+.+|++++||++++||+.
T Consensus 102 m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~y 181 (296)
T KOG1540|consen 102 MKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAY 181 (296)
T ss_pred CeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeE
Confidence 999999999999999999876 2 6899999999999999999988777655 999999999999999999999
Q ss_pred EccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHH-------hhcc-----CCCCCCC
Q 017428 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKI-------CDAY-----YLPAWCS 298 (371)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-----~~~~~~~ 298 (371)
++.+.+.+++++++.+++++|+|||||++.+.++......+....++.+..+.+... ...+ .+..+.+
T Consensus 182 TiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~rfp~ 261 (296)
T KOG1540|consen 182 TIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIRRFPP 261 (296)
T ss_pred EEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhhhcCCC
Confidence 999999999999999999999999999999999876543222222222222211111 1111 1234678
Q ss_pred HHHHHHHHHhCCCceEE-EEecC
Q 017428 299 TADYVKLLQSLSLEDIK-AEDWS 320 (371)
Q Consensus 299 ~~~~~~ll~~aGF~~v~-~~~~~ 320 (371)
.+++..+.+++||..+. .+.+.
T Consensus 262 qe~f~~miedaGF~~~~~ye~lt 284 (296)
T KOG1540|consen 262 QEEFASMIEDAGFSSVNGYENLT 284 (296)
T ss_pred HHHHHHHHHHcCCccccccccce
Confidence 99999999999999886 44333
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-22 Score=182.45 Aligned_cols=191 Identities=24% Similarity=0.503 Sum_probs=144.2
Q ss_pred ccchhhHhhhcccc-cccccCCCCCcCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCE
Q 017428 105 ESSSLWEDIWGDHM-HHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAK 183 (371)
Q Consensus 105 ~~~~~y~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~ 183 (371)
.....|+.+++.++ +.+ . ......++..+.+.+ +.+|||||||+|..+..+++.++++
T Consensus 19 ~~~~~~e~~~g~~~~~~g-----g-----------~~~~~~~l~~l~l~~-----~~~VLDiGcG~G~~a~~la~~~~~~ 77 (263)
T PTZ00098 19 EGIKAYEFIFGEDYISSG-----G-----------IEATTKILSDIELNE-----NSKVLDIGSGLGGGCKYINEKYGAH 77 (263)
T ss_pred ccchhHHHHhCCCCCCCC-----c-----------hHHHHHHHHhCCCCC-----CCEEEEEcCCCChhhHHHHhhcCCE
Confidence 35577888887533 222 1 113456677776665 8999999999999999998876789
Q ss_pred EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccCcC--CHHHHHHHHHHhcCCCcEEEE
Q 017428 184 CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMP--DKSKFVSELARVTAPAGTIII 261 (371)
Q Consensus 184 v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~i 261 (371)
|+|+|+|+.+++.|+++... .+++.+..+|+.+.++++++||+|++..+++|++ ++..++++++++|||||++++
T Consensus 78 v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi 154 (263)
T PTZ00098 78 VHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLI 154 (263)
T ss_pred EEEEECCHHHHHHHHHHcCc---CCceEEEECCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 99999999999999987653 2579999999998888889999999999998986 789999999999999999999
Q ss_pred EeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEEEecCCcccCccH
Q 017428 262 VTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWP 328 (371)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~~~~~~~~~ 328 (371)
.++...... .+... +........ ..+.+.+++.++|+++||++++.++.......++.
T Consensus 155 ~d~~~~~~~-------~~~~~-~~~~~~~~~-~~~~~~~~~~~~l~~aGF~~v~~~d~~~~~~~~~~ 212 (263)
T PTZ00098 155 TDYCADKIE-------NWDEE-FKAYIKKRK-YTLIPIQEYGDLIKSCNFQNVVAKDISDYWLELLQ 212 (263)
T ss_pred EEecccccc-------CcHHH-HHHHHHhcC-CCCCCHHHHHHHHHHCCCCeeeEEeCcHHHHHHHH
Confidence 987654321 11111 111111111 23568999999999999999999887666554443
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.2e-22 Score=182.74 Aligned_cols=157 Identities=20% Similarity=0.259 Sum_probs=122.0
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
++.+|||||||+|.++..+++. +++|+|||+++.+++.|+++....+...++.++++|++++++++++||+|++..+++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~-g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLe 209 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM-GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIE 209 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHH
Confidence 4679999999999999999875 789999999999999999887655544589999999998887778999999999999
Q ss_pred CcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHH-hhc-cCCCCCCCHHHHHHHHHhCCCceEE
Q 017428 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKI-CDA-YYLPAWCSTADYVKLLQSLSLEDIK 315 (371)
Q Consensus 238 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~ll~~aGF~~v~ 315 (371)
|+.|+..+++++.++|||||.+++.+......... .......++... ... +.+..+++++++.++|+++||++++
T Consensus 210 Hv~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~---~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~ 286 (322)
T PLN02396 210 HVANPAEFCKSLSALTIPNGATVLSTINRTMRAYA---STIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKE 286 (322)
T ss_pred hcCCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHH---HhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEE
Confidence 99999999999999999999999998643210000 000001111111 111 1223478999999999999999988
Q ss_pred EEe
Q 017428 316 AED 318 (371)
Q Consensus 316 ~~~ 318 (371)
+.-
T Consensus 287 ~~G 289 (322)
T PLN02396 287 MAG 289 (322)
T ss_pred Eee
Confidence 754
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.1e-22 Score=175.94 Aligned_cols=205 Identities=19% Similarity=0.289 Sum_probs=145.5
Q ss_pred hhHHHHHHHHHHHHhcccchhhHhhhcccccccccCCCCCcCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCC
Q 017428 89 DAAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCG 168 (371)
Q Consensus 89 ~~~~~~~~~~i~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~G 168 (371)
...+..+++.++..||..+..... ..... ....++..+.+++ +.+|||+|||
T Consensus 4 ~~~~~~~f~~~a~~yd~~~~~~~~-------------------~~~~~----~~~~~l~~l~~~~-----~~~vLDiGcG 55 (231)
T TIGR02752 4 EERVHKVFEKIYKKYDRMNSVISF-------------------QRHKK----WRKDTMKRMNVQA-----GTSALDVCCG 55 (231)
T ss_pred HHHHHHHHHHhhhHHhHHHHHhcC-------------------CchHH----HHHHHHHhcCCCC-----CCEEEEeCCC
Confidence 345677778888888764332110 00111 2244555555554 7899999999
Q ss_pred cChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccCcCCHHHHH
Q 017428 169 IGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFV 246 (371)
Q Consensus 169 tG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l 246 (371)
+|.++..+++.. +.+|+|+|+|+.+++.++++++..++ ++++++.+|+.+.++++++||+|++..++++++++..++
T Consensus 56 ~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l 134 (231)
T TIGR02752 56 TADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMELPFDDNSFDYVTIGFGLRNVPDYMQVL 134 (231)
T ss_pred cCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcCCCCCCCccEEEEecccccCCCHHHHH
Confidence 999999999875 46999999999999999999887776 589999999998888888999999999999999999999
Q ss_pred HHHHHhcCCCcEEEEEeccCCCCCcCcccc-------ChHHHHHHH----H-HhhccCCCCCCCHHHHHHHHHhCCCceE
Q 017428 247 SELARVTAPAGTIIIVTWCHRDLAPSEESL-------QPWEQELLK----K-ICDAYYLPAWCSTADYVKLLQSLSLEDI 314 (371)
Q Consensus 247 ~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~-------~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~ll~~aGF~~v 314 (371)
+++.++|+|||++++.+...+......... .+.....+. . .........+.+.+++.++|+++||+++
T Consensus 135 ~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~ 214 (231)
T TIGR02752 135 REMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRDFPGMDELAEMFQEAGFKDV 214 (231)
T ss_pred HHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCee
Confidence 999999999999999886543321100000 000000000 0 0000011235689999999999999999
Q ss_pred EEEecCCc
Q 017428 315 KAEDWSQN 322 (371)
Q Consensus 315 ~~~~~~~~ 322 (371)
+++.+...
T Consensus 215 ~~~~~~~g 222 (231)
T TIGR02752 215 EVKSYTGG 222 (231)
T ss_pred EEEEcccc
Confidence 98877644
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-21 Score=185.55 Aligned_cols=205 Identities=22% Similarity=0.326 Sum_probs=158.2
Q ss_pred HHHHHHHHHHhcccchhhHhhhcccccc--cccCCCCCcCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcC
Q 017428 93 RELKEGIAEFYDESSSLWEDIWGDHMHH--GFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIG 170 (371)
Q Consensus 93 ~~~~~~i~~~yd~~~~~y~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG 170 (371)
....++|..|||..+++|..++++.|++ +||... ..+..++.+.+..+++++.+++ +.+|||||||+|
T Consensus 110 ~~~~~~i~~hYd~~n~~y~l~ld~~m~ys~g~~~~~-----~~L~~Aq~~k~~~l~~~l~l~~-----g~rVLDIGcG~G 179 (383)
T PRK11705 110 KRAWIVGKEHYDLGNDLFEAMLDPRMQYSCGYWKDA-----DTLEEAQEAKLDLICRKLQLKP-----GMRVLDIGCGWG 179 (383)
T ss_pred hhHHHhhhhhcCCcHHHHHHhcCCCCcccccccCCC-----CCHHHHHHHHHHHHHHHhCCCC-----CCEEEEeCCCcc
Confidence 4556788999999999999999997654 788532 2377888889999999888765 899999999999
Q ss_pred hHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccCcCC--HHHHHHH
Q 017428 171 GSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPD--KSKFVSE 248 (371)
Q Consensus 171 ~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~--~~~~l~~ 248 (371)
.++..+++.++++|+|+|+|+.|++.|+++.. ++ ++++...|+.++ +++||+|++..+++|+.+ +..++++
T Consensus 180 ~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l---~~~fD~Ivs~~~~ehvg~~~~~~~l~~ 252 (383)
T PRK11705 180 GLARYAAEHYGVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDL---NGQFDRIVSVGMFEHVGPKNYRTYFEV 252 (383)
T ss_pred HHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhc---CCCCCEEEEeCchhhCChHHHHHHHHH
Confidence 99999998778899999999999999999874 33 488888888765 478999999999999854 5789999
Q ss_pred HHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEEEecCCccc
Q 017428 249 LARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVA 324 (371)
Q Consensus 249 ~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~~~~~ 324 (371)
+.++|||||.+++.++......... ..+... .+.... ...+.+++.+.++ .||++.+++.+..++.
T Consensus 253 i~r~LkpGG~lvl~~i~~~~~~~~~---~~~i~~---yifp~g---~lps~~~i~~~~~-~~~~v~d~~~~~~hy~ 318 (383)
T PRK11705 253 VRRCLKPDGLFLLHTIGSNKTDTNV---DPWINK---YIFPNG---CLPSVRQIAQASE-GLFVMEDWHNFGADYD 318 (383)
T ss_pred HHHHcCCCcEEEEEEccCCCCCCCC---CCCcee---eecCCC---cCCCHHHHHHHHH-CCcEEEEEecChhhHH
Confidence 9999999999999886544322111 111111 011111 1347888888766 5999998887777654
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-20 Score=185.06 Aligned_cols=166 Identities=28% Similarity=0.470 Sum_probs=132.0
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC
Q 017428 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF 222 (371)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 222 (371)
+.+++.+.++ ++.+|||||||+|..+..+++.++++|+|+|+|+.+++.|+++... ...++.|.++|+...++
T Consensus 256 e~l~~~~~~~-----~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~--~~~~v~~~~~d~~~~~~ 328 (475)
T PLN02336 256 KEFVDKLDLK-----PGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIG--RKCSVEFEVADCTKKTY 328 (475)
T ss_pred HHHHHhcCCC-----CCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhc--CCCceEEEEcCcccCCC
Confidence 4455555544 3789999999999999999987788999999999999999887653 34579999999998888
Q ss_pred CCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHH
Q 017428 223 PDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADY 302 (371)
Q Consensus 223 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (371)
++++||+|++..+++|++++..++++++++|||||.+++.++......+. ......+. ..+. ...+.+++
T Consensus 329 ~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~-----~~~~~~~~----~~g~-~~~~~~~~ 398 (475)
T PLN02336 329 PDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTPS-----PEFAEYIK----QRGY-DLHDVQAY 398 (475)
T ss_pred CCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCc-----HHHHHHHH----hcCC-CCCCHHHH
Confidence 88899999999999999999999999999999999999998765432211 11111221 1121 25689999
Q ss_pred HHHHHhCCCceEEEEecCCcccC
Q 017428 303 VKLLQSLSLEDIKAEDWSQNVAP 325 (371)
Q Consensus 303 ~~ll~~aGF~~v~~~~~~~~~~~ 325 (371)
.++|+++||+++.+++++..+..
T Consensus 399 ~~~l~~aGF~~i~~~d~~~~~~~ 421 (475)
T PLN02336 399 GQMLKDAGFDDVIAEDRTDQFLQ 421 (475)
T ss_pred HHHHHHCCCeeeeeecchHHHHH
Confidence 99999999999998887776543
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=6e-21 Score=172.69 Aligned_cols=171 Identities=19% Similarity=0.173 Sum_probs=127.7
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 017428 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (371)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (371)
+-+..++..++ . ++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|+++....++.++++++++|+.+
T Consensus 32 ~~~~~~l~~l~-~-----~~~~vLDiGcG~G~~a~~la~~-g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~ 104 (255)
T PRK11036 32 QDLDRLLAELP-P-----RPLRVLDAGGGEGQTAIKLAEL-GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQD 104 (255)
T ss_pred HHHHHHHHhcC-C-----CCCEEEEeCCCchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHH
Confidence 34556666665 2 3689999999999999999987 789999999999999999999988887789999999987
Q ss_pred CC-CCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHh----hccCCC
Q 017428 220 QP-FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKIC----DAYYLP 294 (371)
Q Consensus 220 ~~-~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 294 (371)
++ +++++||+|++..+++|+.++..+++++.++|||||++++..++....... ..+............ ......
T Consensus 105 l~~~~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~ 183 (255)
T PRK11036 105 IAQHLETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNANGLLMH-NMVAGNFDYVQAGMPKRKKRTLSPD 183 (255)
T ss_pred HhhhcCCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECccHHHHH-HHHccChHHHHhcCccccccCCCCC
Confidence 63 557899999999999999999999999999999999999987654321000 000000000000000 000111
Q ss_pred CCCCHHHHHHHHHhCCCceEEEEe
Q 017428 295 AWCSTADYVKLLQSLSLEDIKAED 318 (371)
Q Consensus 295 ~~~~~~~~~~ll~~aGF~~v~~~~ 318 (371)
..++++++.++|+++||++++..-
T Consensus 184 ~~~~~~~l~~~l~~aGf~~~~~~g 207 (255)
T PRK11036 184 YPLDPEQVYQWLEEAGWQIMGKTG 207 (255)
T ss_pred CCCCHHHHHHHHHHCCCeEeeeee
Confidence 247899999999999999986543
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.9e-20 Score=163.66 Aligned_cols=150 Identities=27% Similarity=0.433 Sum_probs=124.8
Q ss_pred CEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccC
Q 017428 160 KNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (371)
Q Consensus 160 ~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 238 (371)
.+|||||||+|.++..+++.+ +.+|+|+|+|+.+++.+++++...++.+++++...|+...+++ ++||+|++..+++|
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~ 79 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHH 79 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHh
Confidence 379999999999999999987 5799999999999999999999888888999999999776654 68999999999999
Q ss_pred cCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEEEe
Q 017428 239 MPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAED 318 (371)
Q Consensus 239 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~ 318 (371)
+.++..++++++++|||||++++.++......... .........+..+|.++++++||++++...
T Consensus 80 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~---------------~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~ 144 (224)
T smart00828 80 IKDKMDLFSNISRHLKDGGHLVLADFIANLLSAIE---------------HEETTSYLVTREEWAELLARNNLRVVEGVD 144 (224)
T ss_pred CCCHHHHHHHHHHHcCCCCEEEEEEcccccCcccc---------------ccccccccCCHHHHHHHHHHCCCeEEEeEE
Confidence 99999999999999999999999886432211000 000111145899999999999999999998
Q ss_pred cCCcccC
Q 017428 319 WSQNVAP 325 (371)
Q Consensus 319 ~~~~~~~ 325 (371)
+...+..
T Consensus 145 ~~~~~~~ 151 (224)
T smart00828 145 ASLEIAN 151 (224)
T ss_pred CcHhHhh
Confidence 8777654
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.4e-20 Score=161.32 Aligned_cols=197 Identities=18% Similarity=0.229 Sum_probs=130.5
Q ss_pred hhHHHHHHHHHHHHhcccchhhHhhhcccccccccCCCCCcCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCC
Q 017428 89 DAAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCG 168 (371)
Q Consensus 89 ~~~~~~~~~~i~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~G 168 (371)
...+..+++.++..||..++... ++ ....+....+..+..... ++.+|||||||
T Consensus 8 ~~~v~~~f~~iA~~YD~~n~~~s--~g-----------------~~~~wr~~~~~~l~~~~~-------~~~~VLDlGcG 61 (226)
T PRK05785 8 WEELQEAYNKIPKAYDRANRFIS--FN-----------------QDVRWRAELVKTILKYCG-------RPKKVLDVAAG 61 (226)
T ss_pred HHHHHHHHHhhhHHHHHhhhhcc--CC-----------------CcHHHHHHHHHHHHHhcC-------CCCeEEEEcCC
Confidence 34567888888888886554311 00 012233334444433222 26799999999
Q ss_pred cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccCcCCHHHHHHH
Q 017428 169 IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSE 248 (371)
Q Consensus 169 tG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~ 248 (371)
||..+..+++.++.+|+|+|+|+.|++.|+++ ..++++|++++|+++++||+|++..+++|++|++.++++
T Consensus 62 tG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~~~l~e 132 (226)
T PRK05785 62 KGELSYHFKKVFKYYVVALDYAENMLKMNLVA---------DDKVVGSFEALPFRDKSFDVVMSSFALHASDNIEKVIAE 132 (226)
T ss_pred CCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc---------cceEEechhhCCCCCCCEEEEEecChhhccCCHHHHHHH
Confidence 99999999887657999999999999998863 235789999999999999999999999999999999999
Q ss_pred HHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhh-------cc-C----CCCCCCHHHHHHHHHhCCCceEEE
Q 017428 249 LARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICD-------AY-Y----LPAWCSTADYVKLLQSLSLEDIKA 316 (371)
Q Consensus 249 ~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~-~----~~~~~~~~~~~~ll~~aGF~~v~~ 316 (371)
++|+|||. +.+.++..+........+.-+....+..+.. .+ + ...+.+++++.++|+++| ..+..
T Consensus 133 ~~RvLkp~--~~ile~~~p~~~~~~~~~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~~~~~~~-~~~~~ 209 (226)
T PRK05785 133 FTRVSRKQ--VGFIAMGKPDNVIKRKYLSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHREIFEKYA-DIKVY 209 (226)
T ss_pred HHHHhcCc--eEEEEeCCCCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHHHHHHHh-CceEE
Confidence 99999994 3344443332111111111111111111111 11 0 113568999999999974 66777
Q ss_pred EecCCcc
Q 017428 317 EDWSQNV 323 (371)
Q Consensus 317 ~~~~~~~ 323 (371)
+.+.-.+
T Consensus 210 ~~~~~G~ 216 (226)
T PRK05785 210 EERGLGL 216 (226)
T ss_pred EEccccE
Confidence 7665544
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.7e-19 Score=161.67 Aligned_cols=172 Identities=26% Similarity=0.415 Sum_probs=129.8
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 017428 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (371)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (371)
..++..+...+ +.+|||+|||+|.++..++..++ .+|+++|+++.+++.+++++...+...++.+..+|+.+.
T Consensus 41 ~~~~~~~~~~~-----~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 115 (239)
T PRK00216 41 RKTIKWLGVRP-----GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEAL 115 (239)
T ss_pred HHHHHHhCCCC-----CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccC
Confidence 34444444433 78999999999999999998873 899999999999999999987766666899999999888
Q ss_pred CCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHH----HHHHHhhcc-----
Q 017428 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQE----LLKKICDAY----- 291 (371)
Q Consensus 221 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~----- 291 (371)
+++.++||+|++..+++++.++..+++++.++|+|||.+++.++..+.... +...... .+......+
T Consensus 116 ~~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (239)
T PRK00216 116 PFPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFSKPTNPP----LKKAYDFYLFKVLPLIGKLISKNAE 191 (239)
T ss_pred CCCCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEecCCCchH----HHHHHHHHHHhhhHHHHHHHcCCcH
Confidence 777789999999999999999999999999999999999998865432211 1110000 000000000
Q ss_pred -------CCCCCCCHHHHHHHHHhCCCceEEEEecCCcc
Q 017428 292 -------YLPAWCSTADYVKLLQSLSLEDIKAEDWSQNV 323 (371)
Q Consensus 292 -------~~~~~~~~~~~~~ll~~aGF~~v~~~~~~~~~ 323 (371)
....+++.+++.++|+++||+++++..+..++
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~ 230 (239)
T PRK00216 192 AYSYLAESIRAFPDQEELAAMLEEAGFERVRYRNLTGGI 230 (239)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhCCCceeeeeeeecCc
Confidence 00125688999999999999999988765554
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.6e-20 Score=165.16 Aligned_cols=163 Identities=25% Similarity=0.334 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcC
Q 017428 138 QVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216 (371)
Q Consensus 138 ~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d 216 (371)
+.+.+..++..+...+ +.+|||||||+|.++..+++.+ +.+|+|+|+|+.|++.|++ .+++++++|
T Consensus 14 ~~~~~~~ll~~l~~~~-----~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~--------~~~~~~~~d 80 (255)
T PRK14103 14 RGRPFYDLLARVGAER-----ARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE--------RGVDARTGD 80 (255)
T ss_pred hhCHHHHHHHhCCCCC-----CCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh--------cCCcEEEcC
Confidence 3345566777776554 7899999999999999999886 6799999999999999875 258899999
Q ss_pred CCCCCCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHH-HHHHHHhhcc--C-
Q 017428 217 ALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQ-ELLKKICDAY--Y- 292 (371)
Q Consensus 217 ~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~- 292 (371)
+.+++ ++++||+|+++.+++|++++..++++++++|||||.+++..+.... .+.......... ..+....... .
T Consensus 81 ~~~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~-~~~~~~~~~~~~~~~w~~~~~~~~~~~ 158 (255)
T PRK14103 81 VRDWK-PKPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPGNFD-APSHAAVRALARREPWAKLLRDIPFRV 158 (255)
T ss_pred hhhCC-CCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCCCcC-ChhHHHHHHHhccCchhHHhccccccc
Confidence 98764 5689999999999999999999999999999999999987543211 110000000000 0000000111 0
Q ss_pred CCCCCCHHHHHHHHHhCCCceEE
Q 017428 293 LPAWCSTADYVKLLQSLSLEDIK 315 (371)
Q Consensus 293 ~~~~~~~~~~~~ll~~aGF~~v~ 315 (371)
...+.+++++.++|+++||++..
T Consensus 159 ~~~~~~~~~~~~~l~~aGf~v~~ 181 (255)
T PRK14103 159 GAVVQTPAGYAELLTDAGCKVDA 181 (255)
T ss_pred CcCCCCHHHHHHHHHhCCCeEEE
Confidence 11246899999999999997543
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.5e-19 Score=161.90 Aligned_cols=164 Identities=21% Similarity=0.315 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcC
Q 017428 137 AQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216 (371)
Q Consensus 137 ~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d 216 (371)
.+......++..+... ++.+|||+|||+|.++..+++. +.+|+++|+|+.|++.++++. ..+.++++|
T Consensus 26 ~q~~~a~~l~~~l~~~-----~~~~vLDiGcG~G~~~~~l~~~-~~~v~~~D~s~~~l~~a~~~~------~~~~~~~~d 93 (251)
T PRK10258 26 LQRQSADALLAMLPQR-----KFTHVLDAGCGPGWMSRYWRER-GSQVTALDLSPPMLAQARQKD------AADHYLAGD 93 (251)
T ss_pred HHHHHHHHHHHhcCcc-----CCCeEEEeeCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHhhC------CCCCEEEcC
Confidence 3444555666666533 3689999999999999988875 789999999999999998764 235688999
Q ss_pred CCCCCCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCC
Q 017428 217 ALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAW 296 (371)
Q Consensus 217 ~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (371)
++.+++++++||+|+++.+++++.++..++.++.++|+|||.+++..+...... ++ ...+...........+
T Consensus 94 ~~~~~~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~-------el-~~~~~~~~~~~~~~~~ 165 (251)
T PRK10258 94 IESLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSLP-------EL-HQAWQAVDERPHANRF 165 (251)
T ss_pred cccCcCCCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCchH-------HH-HHHHHHhccCCccccC
Confidence 999888888999999999999999999999999999999999999886543321 11 1222222222233347
Q ss_pred CCHHHHHHHHHhCCCceEEEEecCC
Q 017428 297 CSTADYVKLLQSLSLEDIKAEDWSQ 321 (371)
Q Consensus 297 ~~~~~~~~ll~~aGF~~v~~~~~~~ 321 (371)
.+.+++.++|.+.|+.. +++.+..
T Consensus 166 ~~~~~l~~~l~~~~~~~-~~~~~~~ 189 (251)
T PRK10258 166 LPPDAIEQALNGWRYQH-HIQPITL 189 (251)
T ss_pred CCHHHHHHHHHhCCcee-eeeEEEE
Confidence 89999999999999874 4444333
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.9e-20 Score=159.09 Aligned_cols=156 Identities=27% Similarity=0.349 Sum_probs=120.3
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
++.+|||||||.|.++..+|+. |+.|+|+|+++.+++.|+......++ ++.+.+..++++....++||+|+|..+++
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~-Ga~VtgiD~se~~I~~Ak~ha~e~gv--~i~y~~~~~edl~~~~~~FDvV~cmEVlE 135 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL-GASVTGIDASEKPIEVAKLHALESGV--NIDYRQATVEDLASAGGQFDVVTCMEVLE 135 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC-CCeeEEecCChHHHHHHHHhhhhccc--cccchhhhHHHHHhcCCCccEEEEhhHHH
Confidence 4899999999999999999997 89999999999999999999988886 47788888888765558999999999999
Q ss_pred CcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhh-c-cCCCCCCCHHHHHHHHHhCCCceEE
Q 017428 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICD-A-YYLPAWCSTADYVKLLQSLSLEDIK 315 (371)
Q Consensus 238 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~ll~~aGF~~v~ 315 (371)
|++|+..+++.+.+++||||.+++.+....... ..+.-.....+..+.+ + +....+..++++...+..+|+...+
T Consensus 136 Hv~dp~~~~~~c~~lvkP~G~lf~STinrt~ka---~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~~~~ 212 (243)
T COG2227 136 HVPDPESFLRACAKLVKPGGILFLSTINRTLKA---YLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANLKIID 212 (243)
T ss_pred ccCCHHHHHHHHHHHcCCCcEEEEeccccCHHH---HHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCceEEe
Confidence 999999999999999999999999886522110 0000000111111111 1 1112356799999999999999887
Q ss_pred EEec
Q 017428 316 AEDW 319 (371)
Q Consensus 316 ~~~~ 319 (371)
...+
T Consensus 213 ~~g~ 216 (243)
T COG2227 213 RKGL 216 (243)
T ss_pred ecce
Confidence 6533
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2e-19 Score=167.19 Aligned_cols=156 Identities=21% Similarity=0.233 Sum_probs=117.5
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 238 (371)
+.+|||||||+|.++..+++.....|+|+|+|+.++..++......+...++.+..+|++++++ +++||+|++..+++|
T Consensus 123 g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~H 201 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVLYH 201 (322)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChhhc
Confidence 7899999999999999999875457999999999987665543333323579999999999887 788999999999999
Q ss_pred cCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEEEe
Q 017428 239 MPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAED 318 (371)
Q Consensus 239 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~ 318 (371)
+.++..++++++++|+|||.+++.++..+.... ..+.. ...+......+. ..+.+++.++|+++||+++++.+
T Consensus 202 ~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~--~~l~p--~~~y~~~~~~~~---lps~~~l~~~L~~aGF~~i~~~~ 274 (322)
T PRK15068 202 RRSPLDHLKQLKDQLVPGGELVLETLVIDGDEN--TVLVP--GDRYAKMRNVYF---IPSVPALKNWLERAGFKDVRIVD 274 (322)
T ss_pred cCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCc--cccCc--hhHHhcCcccee---CCCHHHHHHHHHHcCCceEEEEe
Confidence 999999999999999999999987653322111 00100 011111111111 24899999999999999999887
Q ss_pred cCCc
Q 017428 319 WSQN 322 (371)
Q Consensus 319 ~~~~ 322 (371)
....
T Consensus 275 ~~~t 278 (322)
T PRK15068 275 VSVT 278 (322)
T ss_pred CCCC
Confidence 6553
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-19 Score=167.50 Aligned_cols=146 Identities=24% Similarity=0.325 Sum_probs=117.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l 236 (371)
++.+|||||||+|.++..+++.+ +.+|+++|+|+.|++.|+++... .+++++.+|++++++++++||+|++..++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~lp~~~~sFDvVIs~~~L 188 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDLPFPTDYADRYVSAGSI 188 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhCCCCCCceeEEEEcChh
Confidence 47899999999999999998876 57999999999999999987542 46889999999998888999999999999
Q ss_pred cCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEE
Q 017428 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKA 316 (371)
Q Consensus 237 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~ 316 (371)
+++++...++++++++|||||.+++.+..... .+....+. ..+. .+.+.+++.++|+++||+.+++
T Consensus 189 ~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~---------~~~~r~~~---~~~~--~~~t~eEl~~lL~~aGF~~V~i 254 (340)
T PLN02490 189 EYWPDPQRGIKEAYRVLKIGGKACLIGPVHPT---------FWLSRFFA---DVWM--LFPKEEEYIEWFTKAGFKDVKL 254 (340)
T ss_pred hhCCCHHHHHHHHHHhcCCCcEEEEEEecCcc---------hhHHHHhh---hhhc--cCCCHHHHHHHHHHCCCeEEEE
Confidence 99999999999999999999999987643211 11111111 1111 1358999999999999999998
Q ss_pred EecCC
Q 017428 317 EDWSQ 321 (371)
Q Consensus 317 ~~~~~ 321 (371)
++...
T Consensus 255 ~~i~~ 259 (340)
T PLN02490 255 KRIGP 259 (340)
T ss_pred EEcCh
Confidence 76433
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.3e-18 Score=152.44 Aligned_cols=175 Identities=28% Similarity=0.396 Sum_probs=130.8
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 017428 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (371)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (371)
+.++..+.+.+ +.+|||+|||+|.++..+++.+ ..+|+|+|+++.+++.++++... ...++.+...|+...
T Consensus 9 ~~~~~~~~~~~-----~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~--~~~~~~~~~~d~~~~ 81 (241)
T PRK08317 9 ARTFELLAVQP-----GDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG--LGPNVEFVRGDADGL 81 (241)
T ss_pred HHHHHHcCCCC-----CCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC--CCCceEEEecccccC
Confidence 44555555554 8899999999999999999886 46899999999999999987332 336899999999888
Q ss_pred CCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHH
Q 017428 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTA 300 (371)
Q Consensus 221 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (371)
++++++||+|++..+++|+.++..+++++.++|||||++++.+......... .................. .......
T Consensus 82 ~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~ 158 (241)
T PRK08317 82 PFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLVWH-SGDRALMRKILNFWSDHF--ADPWLGR 158 (241)
T ss_pred CCCCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCceeec-CCChHHHHHHHHHHHhcC--CCCcHHH
Confidence 8888899999999999999999999999999999999999988543221100 111111222222222111 2235677
Q ss_pred HHHHHHHhCCCceEEEEecCCcccCcc
Q 017428 301 DYVKLLQSLSLEDIKAEDWSQNVAPFW 327 (371)
Q Consensus 301 ~~~~ll~~aGF~~v~~~~~~~~~~~~~ 327 (371)
.+.++|+++||+++.+..+......+.
T Consensus 159 ~~~~~l~~aGf~~~~~~~~~~~~~~~~ 185 (241)
T PRK08317 159 RLPGLFREAGLTDIEVEPYTLIETDLK 185 (241)
T ss_pred HHHHHHHHcCCCceeEEEEEEeccCcc
Confidence 899999999999998887766655543
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.6e-19 Score=161.54 Aligned_cols=168 Identities=17% Similarity=0.161 Sum_probs=120.6
Q ss_pred HHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC
Q 017428 142 IEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP 221 (371)
Q Consensus 142 ~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 221 (371)
...++..+... ++.+|||||||+|.++..++......|+|+|+|+.|+..++...+..+...++.+...++++++
T Consensus 110 ~~~~l~~l~~~-----~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp 184 (314)
T TIGR00452 110 WDRVLPHLSPL-----KGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLH 184 (314)
T ss_pred HHHHHHhcCCC-----CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCC
Confidence 34555555433 3789999999999999998876434799999999998876443332222357888999998887
Q ss_pred CCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHH
Q 017428 222 FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTAD 301 (371)
Q Consensus 222 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (371)
.. ++||+|++..+++|+.++..++++++++|||||.|++.+...+.... ..+... ..+......+. ..+..+
T Consensus 185 ~~-~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~--~~l~p~--~ry~k~~nv~f---lpS~~~ 256 (314)
T TIGR00452 185 EL-YAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLN--TVLVPK--DRYAKMKNVYF---IPSVSA 256 (314)
T ss_pred CC-CCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccc--cccCch--HHHHhcccccc---CCCHHH
Confidence 53 58999999999999999999999999999999999998754322111 111100 11111111122 348999
Q ss_pred HHHHHHhCCCceEEEEecCCc
Q 017428 302 YVKLLQSLSLEDIKAEDWSQN 322 (371)
Q Consensus 302 ~~~ll~~aGF~~v~~~~~~~~ 322 (371)
+.++|+++||+++++......
T Consensus 257 L~~~L~~aGF~~V~i~~~~~t 277 (314)
T TIGR00452 257 LKNWLEKVGFENFRILDVLKT 277 (314)
T ss_pred HHHHHHHCCCeEEEEEeccCC
Confidence 999999999999988765543
|
Known examples to date are restricted to the proteobacteria. |
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.5e-19 Score=155.37 Aligned_cols=199 Identities=23% Similarity=0.307 Sum_probs=139.2
Q ss_pred HHHHHHHHHHhcccchhhHhhhcccccccccCCCCCcCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChH
Q 017428 93 RELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGS 172 (371)
Q Consensus 93 ~~~~~~i~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~ 172 (371)
+++++.++.+||..+..+... ........++..+... ++.+|||+|||+|.+
T Consensus 2 ~~~~~~~~~~y~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~-----~~~~vldiG~G~G~~ 53 (223)
T TIGR01934 2 QEMFDRIAPKYDLLNDLLSFG-----------------------LHRLWRRRAVKLIGVF-----KGQKVLDVACGTGDL 53 (223)
T ss_pred HhHHHHHHhhhhHHHHHHhcc-----------------------cHHHHHHHHHHHhccC-----CCCeEEEeCCCCChh
Confidence 466778888888765443210 0112233444444433 378999999999999
Q ss_pred HHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccCcCCHHHHHHHHH
Q 017428 173 SRYLAKKFG--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELA 250 (371)
Q Consensus 173 ~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~ 250 (371)
+..+++.++ .+++++|+++.+++.++++.. ...++.+..+|+.+.+++.++||+|++..+++++.++..+++++.
T Consensus 54 ~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~~~~l~~~~ 130 (223)
T TIGR01934 54 AIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPFEDNSFDAVTIAFGLRNVTDIQKALREMY 130 (223)
T ss_pred HHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCCCCCcEEEEEEeeeeCCcccHHHHHHHHH
Confidence 999998874 589999999999999998875 235799999999988777789999999999999999999999999
Q ss_pred HhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccC------------CCCCCCHHHHHHHHHhCCCceEEEEe
Q 017428 251 RVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYY------------LPAWCSTADYVKLLQSLSLEDIKAED 318 (371)
Q Consensus 251 ~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~ll~~aGF~~v~~~~ 318 (371)
+.|+|||++++.+...............+...........+. ...+.+.+++.++|+++||+++.++.
T Consensus 131 ~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 210 (223)
T TIGR01934 131 RVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLPESIRAFPSQEELAAMLKEAGFEEVRYRS 210 (223)
T ss_pred HHcCCCcEEEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHhCCCHHHHHHHHHHcCCccceeee
Confidence 999999999998865332211000000000000000000000 01246889999999999999998876
Q ss_pred cCCc
Q 017428 319 WSQN 322 (371)
Q Consensus 319 ~~~~ 322 (371)
+...
T Consensus 211 ~~~~ 214 (223)
T TIGR01934 211 LTFG 214 (223)
T ss_pred eecc
Confidence 6554
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.6e-18 Score=157.08 Aligned_cols=153 Identities=24% Similarity=0.319 Sum_probs=121.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES 235 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~ 235 (371)
++.+|||+|||+|..+..+++..+ .+|+++|+++.+++.|+++....++ +++.+..+|++++++++++||+|+++.+
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~-~~v~~~~~d~~~l~~~~~~fD~Vi~~~v 155 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY-TNVEFRLGEIEALPVADNSVDVIISNCV 155 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC-CCEEEEEcchhhCCCCCCceeEEEEcCc
Confidence 589999999999999888877653 4799999999999999999888877 4899999999998888889999999999
Q ss_pred ccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEE
Q 017428 236 GEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIK 315 (371)
Q Consensus 236 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~ 315 (371)
+++.++...++++++++|||||++++.++..... +......... ... .......+.+++.++|+++||..++
T Consensus 156 ~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~------~~~~~~~~~~-~~~-~~~~~~~~~~e~~~~l~~aGf~~v~ 227 (272)
T PRK11873 156 INLSPDKERVFKEAFRVLKPGGRFAISDVVLRGE------LPEEIRNDAE-LYA-GCVAGALQEEEYLAMLAEAGFVDIT 227 (272)
T ss_pred ccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCC------CCHHHHHhHH-HHh-ccccCCCCHHHHHHHHHHCCCCceE
Confidence 9999999999999999999999999988654321 1111111111 111 1112346889999999999999987
Q ss_pred EEec
Q 017428 316 AEDW 319 (371)
Q Consensus 316 ~~~~ 319 (371)
+...
T Consensus 228 i~~~ 231 (272)
T PRK11873 228 IQPK 231 (272)
T ss_pred EEec
Confidence 7543
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.9e-18 Score=154.29 Aligned_cols=150 Identities=15% Similarity=0.140 Sum_probs=113.8
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES 235 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~ 235 (371)
+.+|||||||+|..+..+++.+ +.+|+|+|+|+.|++.|++++...+...+++++++|+.+.+++ .+|+|+++.+
T Consensus 57 ~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~~~ 134 (247)
T PRK15451 57 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNFT 134 (247)
T ss_pred CCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehhhH
Confidence 7899999999999999888742 5799999999999999999998887777899999999887753 5999999999
Q ss_pred ccCcCC--HHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccC---------------CCCCCC
Q 017428 236 GEHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYY---------------LPAWCS 298 (371)
Q Consensus 236 l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~ 298 (371)
++|+++ ...++++++++|||||.+++.+.......... ......+.......+ .-...+
T Consensus 135 l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~----~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~ 210 (247)
T PRK15451 135 LQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVG----ELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDS 210 (247)
T ss_pred HHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhH----HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCC
Confidence 999864 46899999999999999999985432222111 111111111100011 111358
Q ss_pred HHHHHHHHHhCCCceE
Q 017428 299 TADYVKLLQSLSLEDI 314 (371)
Q Consensus 299 ~~~~~~ll~~aGF~~v 314 (371)
.++..++|+++||..+
T Consensus 211 ~~~~~~~L~~aGF~~v 226 (247)
T PRK15451 211 VETHKARLHKAGFEHS 226 (247)
T ss_pred HHHHHHHHHHcCchhH
Confidence 9999999999999975
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.9e-19 Score=150.05 Aligned_cols=136 Identities=33% Similarity=0.533 Sum_probs=105.3
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
++.+|||||||+|.++..+++. +.+|+|+|+++.+++. .++.....+....+.++++||+|+++.+++
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~-~~~~~g~D~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~ 89 (161)
T PF13489_consen 22 PGKRVLDIGCGTGSFLRALAKR-GFEVTGVDISPQMIEK-----------RNVVFDNFDAQDPPFPDGSFDLIICNDVLE 89 (161)
T ss_dssp TTSEEEEESSTTSHHHHHHHHT-TSEEEEEESSHHHHHH-----------TTSEEEEEECHTHHCHSSSEEEEEEESSGG
T ss_pred CCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHhh-----------hhhhhhhhhhhhhhccccchhhHhhHHHHh
Confidence 4889999999999999999765 7899999999999887 134455554445455679999999999999
Q ss_pred CcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHH-h--hccCCCCCCCHHHHHHHHHhCCCceE
Q 017428 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKI-C--DAYYLPAWCSTADYVKLLQSLSLEDI 314 (371)
Q Consensus 238 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~ll~~aGF~~v 314 (371)
|++|+..+++++.++|||||++++.++.... .. ...+... . .......+++.+++.++++++||+++
T Consensus 90 ~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~~---------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv 159 (161)
T PF13489_consen 90 HLPDPEEFLKELSRLLKPGGYLVISDPNRDD---------PS-PRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIV 159 (161)
T ss_dssp GSSHHHHHHHHHHHCEEEEEEEEEEEEBTTS---------HH-HHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEE
T ss_pred hcccHHHHHHHHHHhcCCCCEEEEEEcCCcc---------hh-hhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEE
Confidence 9999999999999999999999999865432 01 1111111 0 00011246899999999999999988
Q ss_pred E
Q 017428 315 K 315 (371)
Q Consensus 315 ~ 315 (371)
+
T Consensus 160 ~ 160 (161)
T PF13489_consen 160 E 160 (161)
T ss_dssp E
T ss_pred E
Confidence 6
|
... |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.1e-19 Score=147.98 Aligned_cols=106 Identities=32% Similarity=0.513 Sum_probs=96.9
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCccceEEcc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWSM 233 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~v~~~ 233 (371)
++.+|||+|||+|.++..+++.. +.+|+|+|+|+.|++.|+++++..+++ +++|.++|+.+++ ++ +.||+|++.
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~~~~-~~~D~I~~~ 80 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQELE-EKFDIIISN 80 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCGCSS-TTEEEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhccccccC-CCeeEEEEc
Confidence 47899999999999999999644 689999999999999999999999986 9999999999976 55 899999999
Q ss_pred ccccCcCCHHHHHHHHHHhcCCCcEEEEEecc
Q 017428 234 ESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 234 ~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
.+++|+.++..+++++.++|++||.+++.+..
T Consensus 81 ~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 99999999999999999999999999998865
|
... |
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.1e-18 Score=154.65 Aligned_cols=152 Identities=15% Similarity=0.164 Sum_probs=115.0
Q ss_pred CCCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSME 234 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~ 234 (371)
++.+|||+|||+|.++..+++.+ +++|+|+|+|+.|++.|+++++..+...++.++++|+.+.+++ .+|+|++..
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~ 130 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILNF 130 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeeec
Confidence 37899999999999999999864 5789999999999999999988766556899999999988754 589999999
Q ss_pred cccCcCC--HHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhh--cc-------------CCCCCC
Q 017428 235 SGEHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICD--AY-------------YLPAWC 297 (371)
Q Consensus 235 ~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-------------~~~~~~ 297 (371)
+++|+++ ...++++++++|+|||.+++.+......... ............. .+ ......
T Consensus 131 ~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 206 (239)
T TIGR00740 131 TLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKI----NHLLIDLHHQFKRANGYSELEISQKRTALENVMRTD 206 (239)
T ss_pred chhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhH----HHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCC
Confidence 9999863 5789999999999999999998643322111 1111111111100 00 111246
Q ss_pred CHHHHHHHHHhCCCceEE
Q 017428 298 STADYVKLLQSLSLEDIK 315 (371)
Q Consensus 298 ~~~~~~~ll~~aGF~~v~ 315 (371)
+.+++.++|+++||..++
T Consensus 207 s~~~~~~~l~~aGF~~~~ 224 (239)
T TIGR00740 207 SIETHKARLKNVGFSHVE 224 (239)
T ss_pred CHHHHHHHHHHcCCchHH
Confidence 899999999999998653
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.5e-18 Score=147.10 Aligned_cols=137 Identities=23% Similarity=0.364 Sum_probs=110.0
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 238 (371)
+.+|||+|||+|..+..++++ +.+|+|+|+|+.+++.++++....++ .++.+.+.|+.+.+++ ++||+|++..++++
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~-g~~V~gvD~S~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~ 107 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAAN-GFDVTAWDKNPMSIANLERIKAAENL-DNLHTAVVDLNNLTFD-GEYDFILSTVVLMF 107 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHcCC-CcceEEecChhhCCcC-CCcCEEEEecchhh
Confidence 689999999999999999987 78999999999999999999988887 4689999999887664 67999999999988
Q ss_pred cC--CHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEE
Q 017428 239 MP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKA 316 (371)
Q Consensus 239 ~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~ 316 (371)
++ +...+++++.++|+|||.+++.........+. ..+.+..++.+++.++++ ||.++..
T Consensus 108 ~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~el~~~~~--~~~~~~~ 168 (197)
T PRK11207 108 LEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPC-----------------TVGFPFAFKEGELRRYYE--GWEMVKY 168 (197)
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCC-----------------CCCCCCccCHHHHHHHhC--CCeEEEe
Confidence 75 46899999999999999977655322211110 011123468899999997 8998776
Q ss_pred E
Q 017428 317 E 317 (371)
Q Consensus 317 ~ 317 (371)
.
T Consensus 169 ~ 169 (197)
T PRK11207 169 N 169 (197)
T ss_pred e
Confidence 4
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.2e-19 Score=155.33 Aligned_cols=152 Identities=23% Similarity=0.306 Sum_probs=115.7
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCC-----CeEEEEcCCCCCCCCCCccceEEcc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLAD-----KVSFQVGDALQQPFPDGQFDLVWSM 233 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~-----~v~~~~~d~~~~~~~~~~fD~v~~~ 233 (371)
+++|||+|||+|.+++.|++. |+.|+|||+++.|++.|++......+-. ++++...|++... +.||+|+|.
T Consensus 90 g~~ilDvGCGgGLLSepLArl-ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcs 165 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL-GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCS 165 (282)
T ss_pred CceEEEeccCccccchhhHhh-CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeH
Confidence 578999999999999999996 8999999999999999999844332212 3667777777753 559999999
Q ss_pred ccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhc--cCCCCCCCHHHHHHHHHhCCC
Q 017428 234 ESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDA--YYLPAWCSTADYVKLLQSLSL 311 (371)
Q Consensus 234 ~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ll~~aGF 311 (371)
.+++|+.|++.+++.+.+.|||||.|++.+............ +....+..+.+. +.+..|.+++++..+|+.+|+
T Consensus 166 evleHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i---~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~ 242 (282)
T KOG1270|consen 166 EVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTI---FLAEIVLRIVPKGTHTWEKFINPEELTSILNANGA 242 (282)
T ss_pred HHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccc---cHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCc
Confidence 999999999999999999999999999998655433222111 122223232222 223357899999999999999
Q ss_pred ceEEEE
Q 017428 312 EDIKAE 317 (371)
Q Consensus 312 ~~v~~~ 317 (371)
.+..+.
T Consensus 243 ~v~~v~ 248 (282)
T KOG1270|consen 243 QVNDVV 248 (282)
T ss_pred chhhhh
Confidence 876653
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.6e-19 Score=133.49 Aligned_cols=95 Identities=38% Similarity=0.623 Sum_probs=84.2
Q ss_pred EEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccCcCCH
Q 017428 163 VDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDK 242 (371)
Q Consensus 163 LDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~ 242 (371)
||+|||+|..+..+++..+.+|+++|+++.+++.++++... .++.+..+|+.++|+++++||+|++..+++|++++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~----~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~ 76 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKN----EGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDP 76 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTT----STEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccc----cCchheeehHHhCccccccccccccccceeeccCH
Confidence 89999999999999987468999999999999999998754 35679999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCcEEEE
Q 017428 243 SKFVSELARVTAPAGTIII 261 (371)
Q Consensus 243 ~~~l~~~~~~LkpgG~l~i 261 (371)
..+++++.|+|||||+++|
T Consensus 77 ~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 77 EAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHcCcCeEEeC
Confidence 9999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.1e-18 Score=135.87 Aligned_cols=105 Identities=33% Similarity=0.582 Sum_probs=90.6
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC-CCCCCCCCccceEEccc-
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA-LQQPFPDGQFDLVWSME- 234 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~v~~~~- 234 (371)
|+.+|||||||+|.++..+++.. +++|+|+|+|+.+++.|++++...+..+++++++.|+ ..... .+.||+|++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~ 79 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSGF 79 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECSG
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECCC
Confidence 47899999999999999999954 8999999999999999999997777888999999999 33333 36699999998
Q ss_pred cccCc---CCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 235 SGEHM---PDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 235 ~l~~~---~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+++++ .+..++++++.+.|+|||++++.+
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 TLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 55444 456889999999999999999965
|
... |
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.1e-17 Score=153.62 Aligned_cols=164 Identities=20% Similarity=0.276 Sum_probs=122.0
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC
Q 017428 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP 221 (371)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 221 (371)
..+++.+..+ +..+|||||||+|.+++.+++++ +.+++++|+ +.+++.+++++...++.++++++.+|+.+.+
T Consensus 139 ~~l~~~~~~~-----~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~ 212 (306)
T TIGR02716 139 QLLLEEAKLD-----GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES 212 (306)
T ss_pred HHHHHHcCCC-----CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCC
Confidence 3345555444 37899999999999999999998 679999998 7899999999999998889999999998766
Q ss_pred CCCCccceEEccccccCcCCH--HHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCH
Q 017428 222 FPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCST 299 (371)
Q Consensus 222 ~~~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (371)
++ .+|+|++..++|++.+. ..++++++++|+|||++++.++...... ...+. .....+....-......+...
T Consensus 213 ~~--~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~ 287 (306)
T TIGR02716 213 YP--EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPE--NPNFD-YLSHYILGAGMPFSVLGFKEQ 287 (306)
T ss_pred CC--CCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCC--Cchhh-HHHHHHHHcccccccccCCCH
Confidence 54 36999999999988653 5799999999999999999997543321 11111 111111111111111124568
Q ss_pred HHHHHHHHhCCCceEEEE
Q 017428 300 ADYVKLLQSLSLEDIKAE 317 (371)
Q Consensus 300 ~~~~~ll~~aGF~~v~~~ 317 (371)
++|.++|+++||+.+++.
T Consensus 288 ~e~~~ll~~aGf~~v~~~ 305 (306)
T TIGR02716 288 ARYKEILESLGYKDVTMV 305 (306)
T ss_pred HHHHHHHHHcCCCeeEec
Confidence 999999999999988753
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.9e-17 Score=148.98 Aligned_cols=163 Identities=22% Similarity=0.329 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcC
Q 017428 138 QVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216 (371)
Q Consensus 138 ~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d 216 (371)
+......++..+.+.+ +.+|||||||+|.++..+++.+ +.+|+|+|+|+.|++.|+++. +++.+..+|
T Consensus 16 ~~~~~~~ll~~~~~~~-----~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d 84 (258)
T PRK01683 16 RTRPARDLLARVPLEN-----PRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL------PDCQFVEAD 84 (258)
T ss_pred hhcHHHHHHhhCCCcC-----CCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC------CCCeEEECc
Confidence 3445666777766554 7899999999999999999887 689999999999999998763 468899999
Q ss_pred CCCCCCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHH--HHHHHHHhhcc-CC
Q 017428 217 ALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWE--QELLKKICDAY-YL 293 (371)
Q Consensus 217 ~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~ 293 (371)
+..+. +.++||+|+++.+++|+++...++++++++|||||.+++....... .+....+.... ..+........ ..
T Consensus 85 ~~~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~~~~-~~~~~~~~~~~~~~~w~~~~~~~~~~~ 162 (258)
T PRK01683 85 IASWQ-PPQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPDNLD-EPSHVLMREVAENGPWEQNLPDRGARR 162 (258)
T ss_pred hhccC-CCCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECCCCCC-CHHHHHHHHHHccCchHHHhccccccC
Confidence 98764 4578999999999999999999999999999999999986422111 01000000000 00001111011 01
Q ss_pred CCCCCHHHHHHHHHhCCCce
Q 017428 294 PAWCSTADYVKLLQSLSLED 313 (371)
Q Consensus 294 ~~~~~~~~~~~ll~~aGF~~ 313 (371)
..+.+...+.++|.++|+.+
T Consensus 163 ~~~~~~~~~~~~l~~~g~~v 182 (258)
T PRK01683 163 APLPPPHAYYDALAPAACRV 182 (258)
T ss_pred cCCCCHHHHHHHHHhCCCce
Confidence 12457889999999999864
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.1e-17 Score=142.14 Aligned_cols=136 Identities=18% Similarity=0.258 Sum_probs=107.9
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 238 (371)
+.+|||+|||+|.++..++++ +.+|+|+|+|+.+++.++++....++ ++.+...|+...+++ ++||+|++..++++
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~-g~~V~~iD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~ 106 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLA-GYDVRAWDHNPASIASVLDMKARENL--PLRTDAYDINAAALN-EDYDFIFSTVVFMF 106 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHHhCC--CceeEeccchhcccc-CCCCEEEEeccccc
Confidence 679999999999999999986 78999999999999999999888776 378888888766654 67999999999998
Q ss_pred cC--CHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEE
Q 017428 239 MP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKA 316 (371)
Q Consensus 239 ~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~ 316 (371)
++ +...++++++++|||||++++.++......+.. ...+..++++++.+++. +|+++..
T Consensus 107 ~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~-----------------~~~~~~~~~~el~~~f~--~~~~~~~ 167 (195)
T TIGR00477 107 LQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCH-----------------MPFSFTFKEDELRQYYA--DWELLKY 167 (195)
T ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCC-----------------CCcCccCCHHHHHHHhC--CCeEEEe
Confidence 84 457899999999999999877765332211100 01122478999999996 5888776
Q ss_pred E
Q 017428 317 E 317 (371)
Q Consensus 317 ~ 317 (371)
.
T Consensus 168 ~ 168 (195)
T TIGR00477 168 N 168 (195)
T ss_pred e
Confidence 5
|
Part of a tellurite-reducing operon tehA and tehB |
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-17 Score=138.67 Aligned_cols=155 Identities=22% Similarity=0.346 Sum_probs=119.1
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeE-EEEcCCCCCC-CCCCccceEEccccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVS-FQVGDALQQP-FPDGQFDLVWSMESG 236 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~-~~~~d~~~~~-~~~~~fD~v~~~~~l 236 (371)
...|||||||||..-...-..-+.+|+++|+++.|-+++.+.++.+ .+.++. |++++.++++ +++++||.|++..+|
T Consensus 77 K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~-k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvL 155 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEK-KPLQVERFVVADGENLPQLADGSYDTVVCTLVL 155 (252)
T ss_pred ccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhc-cCcceEEEEeechhcCcccccCCeeeEEEEEEE
Confidence 4668999999999877665433689999999999999999998887 456777 9999999997 889999999999999
Q ss_pred cCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhc-cCCCC--CCCHHHHHHHHHhCCCce
Q 017428 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDA-YYLPA--WCSTADYVKLLQSLSLED 313 (371)
Q Consensus 237 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~ll~~aGF~~ 313 (371)
+...|+.+.|+++.|+|||||++++.+....... .|. .++....+. ++... ..-..+..+.|+++-|+.
T Consensus 156 CSve~~~k~L~e~~rlLRpgG~iifiEHva~~y~-------~~n-~i~q~v~ep~~~~~~dGC~ltrd~~e~Leda~f~~ 227 (252)
T KOG4300|consen 156 CSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYG-------FWN-RILQQVAEPLWHLESDGCVLTRDTGELLEDAEFSI 227 (252)
T ss_pred eccCCHHHHHHHHHHhcCCCcEEEEEecccccch-------HHH-HHHHHHhchhhheeccceEEehhHHHHhhhccccc
Confidence 9999999999999999999999999986543322 222 233332222 11111 112335568899999999
Q ss_pred EEEEecCCc
Q 017428 314 IKAEDWSQN 322 (371)
Q Consensus 314 v~~~~~~~~ 322 (371)
+..++...+
T Consensus 228 ~~~kr~~~~ 236 (252)
T KOG4300|consen 228 DSCKRFNFG 236 (252)
T ss_pred chhhcccCC
Confidence 888766554
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.6e-17 Score=143.72 Aligned_cols=143 Identities=29% Similarity=0.402 Sum_probs=114.9
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
+.+|||+|||+|.++..+++.+ ..+|+++|+++.++..++++.. +++.++.+|+.+.++++++||+|++..+++
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~ 109 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLPLEDSSFDLIVSNLALQ 109 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCCCCCCceeEEEEhhhhh
Confidence 5789999999999999999886 5679999999999999887643 478999999999888889999999999999
Q ss_pred CcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEEE
Q 017428 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAE 317 (371)
Q Consensus 238 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~ 317 (371)
|+.++..++.++.++|+|||.+++.++..... ..+. ... .... ..+.+.+++.+++.++ |..+.+.
T Consensus 110 ~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~~~-------~~~~-~~~----~~~~-~~~~~~~~~~~~l~~~-f~~~~~~ 175 (240)
T TIGR02072 110 WCDDLSQALSELARVLKPGGLLAFSTFGPGTL-------HELR-QSF----GQHG-LRYLSLDELKALLKNS-FELLTLE 175 (240)
T ss_pred hccCHHHHHHHHHHHcCCCcEEEEEeCCccCH-------HHHH-HHH----HHhc-cCCCCHHHHHHHHHHh-cCCcEEE
Confidence 99999999999999999999999987543321 1111 111 1111 2367899999999998 9877665
Q ss_pred ecC
Q 017428 318 DWS 320 (371)
Q Consensus 318 ~~~ 320 (371)
...
T Consensus 176 ~~~ 178 (240)
T TIGR02072 176 EEL 178 (240)
T ss_pred EEE
Confidence 433
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.1e-16 Score=134.10 Aligned_cols=127 Identities=20% Similarity=0.166 Sum_probs=107.2
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
+.+|||+|||+|..+..++... +++|+++|+++.|++.|+++++..++. +++++.+|+.+.+. .++||+|+++.
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~-~i~~~~~d~~~~~~-~~~fDlV~~~~--- 120 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLK-NVTVVHGRAEEFGQ-EEKFDVVTSRA--- 120 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCC-CEEEEeccHhhCCC-CCCccEEEEcc---
Confidence 7899999999999999998866 689999999999999999999999885 59999999988765 67999999874
Q ss_pred CcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEEE
Q 017428 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAE 317 (371)
Q Consensus 238 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~ 317 (371)
+.++..++++++++|||||.+++.... ....++.++.+..|+.+..+.
T Consensus 121 -~~~~~~~l~~~~~~LkpGG~lv~~~~~-------------------------------~~~~~l~~~~~~~~~~~~~~~ 168 (187)
T PRK00107 121 -VASLSDLVELCLPLLKPGGRFLALKGR-------------------------------DPEEEIAELPKALGGKVEEVI 168 (187)
T ss_pred -ccCHHHHHHHHHHhcCCCeEEEEEeCC-------------------------------ChHHHHHHHHHhcCceEeeeE
Confidence 467789999999999999999997521 124456777778899877776
Q ss_pred ecCCc
Q 017428 318 DWSQN 322 (371)
Q Consensus 318 ~~~~~ 322 (371)
.+..+
T Consensus 169 ~~~~~ 173 (187)
T PRK00107 169 ELTLP 173 (187)
T ss_pred EEecC
Confidence 66554
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.5e-16 Score=139.72 Aligned_cols=155 Identities=28% Similarity=0.342 Sum_probs=115.4
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-CCCCccceEEccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-FPDGQFDLVWSMESG 236 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~v~~~~~l 236 (371)
++.+|||||||+|.++..+++. +++|+++|+++.+++.+++++...+. ++.+...|+.+.+ ...++||+|++..++
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARL-GADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHc-CCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 4789999999999999988886 78999999999999999998877664 5788888887654 345789999999999
Q ss_pred cCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHh--hccCCCCCCCHHHHHHHHHhCCCceE
Q 017428 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKIC--DAYYLPAWCSTADYVKLLQSLSLEDI 314 (371)
Q Consensus 237 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ll~~aGF~~v 314 (371)
+|+.+...+++.+.++|+|||.+++..+...... ............... .......+++.+++.++|+++||+++
T Consensus 125 ~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v 201 (233)
T PRK05134 125 EHVPDPASFVRACAKLVKPGGLVFFSTLNRNLKS---YLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQ 201 (233)
T ss_pred hccCCHHHHHHHHHHHcCCCcEEEEEecCCChHH---HHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEe
Confidence 9999999999999999999999998765321100 000000000010000 00112236789999999999999999
Q ss_pred EEEe
Q 017428 315 KAED 318 (371)
Q Consensus 315 ~~~~ 318 (371)
+...
T Consensus 202 ~~~~ 205 (233)
T PRK05134 202 DITG 205 (233)
T ss_pred eeee
Confidence 8753
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.7e-17 Score=137.25 Aligned_cols=156 Identities=24% Similarity=0.383 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc
Q 017428 137 AQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVG 215 (371)
Q Consensus 137 ~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~ 215 (371)
...+-...++..+++.. ..+|.|+|||+|..+..+++++ ++.|+|+|-|++|++.|+++. ++++|..+
T Consensus 14 eRtRPa~dLla~Vp~~~-----~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl------p~~~f~~a 82 (257)
T COG4106 14 ERTRPARDLLARVPLER-----PRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL------PDATFEEA 82 (257)
T ss_pred hccCcHHHHHhhCCccc-----cceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC------CCCceecc
Confidence 33445667777777765 8999999999999999999999 899999999999999998764 68999999
Q ss_pred CCCCCCCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHh-------
Q 017428 216 DALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKIC------- 288 (371)
Q Consensus 216 d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 288 (371)
|+.+.. +...+|+++++.+|++++|-..+|..+...|.|||+|.+......+.. . ...+....
T Consensus 83 Dl~~w~-p~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~dep-----s----H~~mr~~A~~~p~~~ 152 (257)
T COG4106 83 DLRTWK-PEQPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDNLDEP-----S----HRLMRETADEAPFAQ 152 (257)
T ss_pred cHhhcC-CCCccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCccCch-----h----HHHHHHHHhcCchhh
Confidence 998874 568899999999999999999999999999999999999764322211 0 11111111
Q ss_pred --hc--cCCCCCCCHHHHHHHHHhCCCce
Q 017428 289 --DA--YYLPAWCSTADYVKLLQSLSLED 313 (371)
Q Consensus 289 --~~--~~~~~~~~~~~~~~ll~~aGF~~ 313 (371)
.. .......++..+-++|...+-++
T Consensus 153 ~l~~~~~~r~~v~s~a~Yy~lLa~~~~rv 181 (257)
T COG4106 153 ELGGRGLTRAPLPSPAAYYELLAPLACRV 181 (257)
T ss_pred hhCccccccCCCCCHHHHHHHhCccccee
Confidence 11 11223578999999999887654
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-16 Score=141.34 Aligned_cols=166 Identities=25% Similarity=0.289 Sum_probs=119.4
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 017428 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (371)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (371)
.+...++..+... ..++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++...+...++.+.+.|+.+
T Consensus 40 ~~~~~~~~~l~~~---~~~~~~vLDiGcG~G~~~~~la~~-~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~ 115 (219)
T TIGR02021 40 AMRRKLLDWLPKD---PLKGKRVLDAGCGTGLLSIELAKR-GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLS 115 (219)
T ss_pred HHHHHHHHHHhcC---CCCCCEEEEEeCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhh
Confidence 4445555555420 124789999999999999999886 679999999999999999999877765689999999988
Q ss_pred CCCCCCccceEEccccccCcCC--HHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccC-CC--
Q 017428 220 QPFPDGQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYY-LP-- 294 (371)
Q Consensus 220 ~~~~~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-- 294 (371)
.+ ++||+|++..+++|++. ...+++++.+++++++.+.+.... .... ....+........ .+
T Consensus 116 ~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~---------~~~~-~~~~~~~~~~~~~~~~~~ 182 (219)
T TIGR02021 116 LC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAPKT---------AWLA-FLKMIGELFPGSSRATSA 182 (219)
T ss_pred CC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECCCc---------hHHH-HHHHHHhhCcCcccccce
Confidence 65 78999999999988853 578899999999877665543210 0000 1111111111111 01
Q ss_pred CCCCHHHHHHHHHhCCCceEEEEecCCc
Q 017428 295 AWCSTADYVKLLQSLSLEDIKAEDWSQN 322 (371)
Q Consensus 295 ~~~~~~~~~~ll~~aGF~~v~~~~~~~~ 322 (371)
.+.+++++.++++++||.++..+.....
T Consensus 183 ~~~~~~~~~~~l~~~Gf~v~~~~~~~~~ 210 (219)
T TIGR02021 183 YLHPMTDLERALGELGWKIVREGLVSTG 210 (219)
T ss_pred EEecHHHHHHHHHHcCceeeeeeccccc
Confidence 2468999999999999999988755544
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.8e-16 Score=141.21 Aligned_cols=151 Identities=23% Similarity=0.334 Sum_probs=107.6
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
++.+|||||||+|.++..+++. +..|+|+|+|+.+++.|++++...+..+++.+..+|+.. .+++||+|++..+++
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~fD~v~~~~~l~ 138 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARR-GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES---LLGRFDTVVCLDVLI 138 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh---ccCCcCEEEEcchhh
Confidence 3789999999999999999886 678999999999999999999887765689999999533 357899999999998
Q ss_pred CcCC--HHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhcc---CCCCCCCHHHHHHHHHhCCCc
Q 017428 238 HMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAY---YLPAWCSTADYVKLLQSLSLE 312 (371)
Q Consensus 238 ~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ll~~aGF~ 312 (371)
|+++ ...+++++.+.+++++.+.+... . ..... ...+....... ....+.+.+++.++++++||+
T Consensus 139 ~~~~~~~~~~l~~l~~~~~~~~~i~~~~~---~------~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 208 (230)
T PRK07580 139 HYPQEDAARMLAHLASLTRGSLIFTFAPY---T------PLLAL-LHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFK 208 (230)
T ss_pred cCCHHHHHHHHHHHHhhcCCeEEEEECCc---c------HHHHH-HHHhccccCCccCCCCccccCHHHHHHHHHHCCCc
Confidence 8764 46788888887654443332110 0 00000 01111111101 111246889999999999999
Q ss_pred eEEEEecCCc
Q 017428 313 DIKAEDWSQN 322 (371)
Q Consensus 313 ~v~~~~~~~~ 322 (371)
++....+...
T Consensus 209 ~~~~~~~~~~ 218 (230)
T PRK07580 209 VVRTERISSG 218 (230)
T ss_pred eEeeeeccch
Confidence 9988766544
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.4e-16 Score=140.52 Aligned_cols=157 Identities=22% Similarity=0.250 Sum_probs=113.6
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
.+.+|||||||.|..+..++.+....|+|+|.++....+.+....-.|....+.+....++++|. .+.||+|++..+|+
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVLY 193 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVLY 193 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeeehh
Confidence 38999999999999999999884457999999988766544433333333334444456777776 68999999999999
Q ss_pred CcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEEE
Q 017428 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAE 317 (371)
Q Consensus 238 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~ 317 (371)
|..++-..|.+++..|+|||.|++-+...+.... ..+.+. ..+......|.. .|...+..+|+++||..|++.
T Consensus 194 Hrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~--~~L~P~--~rYa~m~nv~Fi---Ps~~~L~~wl~r~gF~~v~~v 266 (315)
T PF08003_consen 194 HRRSPLDHLKQLKDSLRPGGELVLETLVIDGDEN--TVLVPE--DRYAKMRNVWFI---PSVAALKNWLERAGFKDVRCV 266 (315)
T ss_pred ccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCc--eEEccC--CcccCCCceEEe---CCHHHHHHHHHHcCCceEEEe
Confidence 9999999999999999999999997765433221 111110 111111222333 389999999999999999987
Q ss_pred ecCCc
Q 017428 318 DWSQN 322 (371)
Q Consensus 318 ~~~~~ 322 (371)
+....
T Consensus 267 ~~~~T 271 (315)
T PF08003_consen 267 DVSPT 271 (315)
T ss_pred cCccC
Confidence 66543
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.4e-16 Score=143.94 Aligned_cols=136 Identities=18% Similarity=0.281 Sum_probs=109.2
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 238 (371)
+.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.+++++...++ ++++...|+...++ +++||+|++..+++|
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~-g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~ 196 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALL-GFDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSASI-QEEYDFILSTVVLMF 196 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcccc-cCCccEEEEcchhhh
Confidence 569999999999999999986 78999999999999999999988876 68899999877655 688999999999998
Q ss_pred cC--CHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEE
Q 017428 239 MP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKA 316 (371)
Q Consensus 239 ~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~ 316 (371)
+. +...+++++.++|+|||++++.........+. ....+..++..++.+++.. |+++..
T Consensus 197 l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~-----------------~~p~~~~~~~~el~~~~~~--~~i~~~ 257 (287)
T PRK12335 197 LNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPC-----------------PMPFSFTFKEGELKDYYQD--WEIVKY 257 (287)
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCC-----------------CCCCCcccCHHHHHHHhCC--CEEEEE
Confidence 85 56889999999999999987765432221110 0111234789999999965 888776
Q ss_pred E
Q 017428 317 E 317 (371)
Q Consensus 317 ~ 317 (371)
.
T Consensus 258 ~ 258 (287)
T PRK12335 258 N 258 (287)
T ss_pred e
Confidence 4
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.7e-15 Score=139.55 Aligned_cols=146 Identities=22% Similarity=0.242 Sum_probs=102.5
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCC----CCCeEEEEcCCCCCCCCCCccceEEcc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGL----ADKVSFQVGDALQQPFPDGQFDLVWSM 233 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~~~~fD~v~~~ 233 (371)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|+++....+. ..++.|...|+.++ +++||+|++.
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~-g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~ 219 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE-GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTCL 219 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEEc
Confidence 3689999999999999999986 78999999999999999999876421 13678999998654 4789999999
Q ss_pred ccccCcCCH--HHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCC------CCCCCHHHHHHH
Q 017428 234 ESGEHMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYL------PAWCSTADYVKL 305 (371)
Q Consensus 234 ~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l 305 (371)
.+++|+++. ..+++.+.+ +.+||. ++.. .... +....+......+.- ..+++.+++.++
T Consensus 220 ~vL~H~p~~~~~~ll~~l~~-l~~g~l-iIs~-~p~~----------~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~l 286 (315)
T PLN02585 220 DVLIHYPQDKADGMIAHLAS-LAEKRL-IISF-APKT----------LYYDILKRIGELFPGPSKATRAYLHAEADVERA 286 (315)
T ss_pred CEEEecCHHHHHHHHHHHHh-hcCCEE-EEEe-CCcc----------hHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHH
Confidence 999998763 356666665 455555 4422 1111 011112221111111 113589999999
Q ss_pred HHhCCCceEEEEecC
Q 017428 306 LQSLSLEDIKAEDWS 320 (371)
Q Consensus 306 l~~aGF~~v~~~~~~ 320 (371)
|+++||+++..+...
T Consensus 287 L~~AGf~v~~~~~~~ 301 (315)
T PLN02585 287 LKKAGWKVARREMTA 301 (315)
T ss_pred HHHCCCEEEEEEEee
Confidence 999999988765444
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-15 Score=135.58 Aligned_cols=155 Identities=25% Similarity=0.301 Sum_probs=115.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC-CCccceEEccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP-DGQFDLVWSMESG 236 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~v~~~~~l 236 (371)
++.+|||+|||+|.++..+++. +..++++|+++.+++.+++++...+. .++.+...|+.+.+.. .++||+|++..++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL-GANVTGIDASEENIEVAKLHAKKDPL-LKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHHcCC-CceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 3789999999999999988875 67899999999999999998877664 2688999998776533 3789999999999
Q ss_pred cCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccCh-HHHHHHHHHh-h-ccCCCCCCCHHHHHHHHHhCCCce
Q 017428 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQP-WEQELLKKIC-D-AYYLPAWCSTADYVKLLQSLSLED 313 (371)
Q Consensus 237 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~-~~~~~~~~~~~~~~~ll~~aGF~~ 313 (371)
+|+.++..+++++.++|+|||.+++..+...... .... .......... . ......+.+..++.++++++||++
T Consensus 123 ~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i 198 (224)
T TIGR01983 123 EHVPDPQAFIRACAQLLKPGGILFFSTINRTPKS----YLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRV 198 (224)
T ss_pred HhCCCHHHHHHHHHHhcCCCcEEEEEecCCCchH----HHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCee
Confidence 9999999999999999999999998765322100 0000 0000000000 0 011123568899999999999999
Q ss_pred EEEEe
Q 017428 314 IKAED 318 (371)
Q Consensus 314 v~~~~ 318 (371)
+++..
T Consensus 199 ~~~~~ 203 (224)
T TIGR01983 199 KDVKG 203 (224)
T ss_pred eeeee
Confidence 98764
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.69 E-value=2e-15 Score=128.91 Aligned_cols=99 Identities=20% Similarity=0.197 Sum_probs=86.0
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
+.+|||+|||+|.++..++... ..+|+|+|+|+.|++.++++++..++. +++++.+|+.+.+ ..++||+|++..
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~-~i~~i~~d~~~~~-~~~~fD~I~s~~--- 117 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLN-NVEIVNGRAEDFQ-HEEQFDVITSRA--- 117 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCC-CeEEEecchhhcc-ccCCccEEEehh---
Confidence 7899999999999999998765 578999999999999999999888874 7999999998864 357899999875
Q ss_pred CcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 238 HMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 238 ~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+.+...+++.++++|+|||.+++..
T Consensus 118 -~~~~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 118 -LASLNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred -hhCHHHHHHHHHHhcCCCCEEEEEc
Confidence 3466778899999999999999864
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.66 E-value=2e-15 Score=131.36 Aligned_cols=99 Identities=21% Similarity=0.344 Sum_probs=85.4
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
+.+|||||||+|.++..+++.. +.+++|+|+|+.+++.|+++. +++.+.++|+.+ ++++++||+|++..+++
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~------~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~ 116 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL------PNINIIQGSLFD-PFKDNFFDLVLTKGVLI 116 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC------CCCcEEEeeccC-CCCCCCEEEEEECChhh
Confidence 6789999999999999998875 689999999999999998753 357788999888 78889999999999999
Q ss_pred CcC--CHHHHHHHHHHhcCCCcEEEEEeccC
Q 017428 238 HMP--DKSKFVSELARVTAPAGTIIIVTWCH 266 (371)
Q Consensus 238 ~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~ 266 (371)
|++ +...+++++++++ ++.+++.++..
T Consensus 117 hl~p~~~~~~l~el~r~~--~~~v~i~e~~~ 145 (204)
T TIGR03587 117 HINPDNLPTAYRELYRCS--NRYILIAEYYN 145 (204)
T ss_pred hCCHHHHHHHHHHHHhhc--CcEEEEEEeeC
Confidence 995 3578899999987 57888888643
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.6e-15 Score=126.18 Aligned_cols=134 Identities=16% Similarity=0.226 Sum_probs=106.0
Q ss_pred HHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC
Q 017428 145 TLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP 223 (371)
Q Consensus 145 ~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 223 (371)
++..+.+.+ +.+|||+|||+|.++..+++.. +.+|+++|+++.+++.+++++...++ .++++..+|+.. ++
T Consensus 23 ~~~~l~~~~-----~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~-~~i~~~~~d~~~-~~- 94 (187)
T PRK08287 23 ALSKLELHR-----AKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGC-GNIDIIPGEAPI-EL- 94 (187)
T ss_pred HHHhcCCCC-----CCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC-CCeEEEecCchh-hc-
Confidence 344555443 7899999999999999999876 57999999999999999999988877 479999988743 33
Q ss_pred CCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHH
Q 017428 224 DGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYV 303 (371)
Q Consensus 224 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (371)
.++||+|++..... ....+++.+.++|+|||++++.... ..+.+++.
T Consensus 95 ~~~~D~v~~~~~~~---~~~~~l~~~~~~Lk~gG~lv~~~~~------------------------------~~~~~~~~ 141 (187)
T PRK08287 95 PGKADAIFIGGSGG---NLTAIIDWSLAHLHPGGRLVLTFIL------------------------------LENLHSAL 141 (187)
T ss_pred CcCCCEEEECCCcc---CHHHHHHHHHHhcCCCeEEEEEEec------------------------------HhhHHHHH
Confidence 36799999876543 4567899999999999999886421 11456777
Q ss_pred HHHHhCCCceEEEEec
Q 017428 304 KLLQSLSLEDIKAEDW 319 (371)
Q Consensus 304 ~ll~~aGF~~v~~~~~ 319 (371)
++++++||..+++..+
T Consensus 142 ~~l~~~g~~~~~~~~~ 157 (187)
T PRK08287 142 AHLEKCGVSELDCVQL 157 (187)
T ss_pred HHHHHCCCCcceEEEE
Confidence 8999999987776544
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.65 E-value=3e-16 Score=121.29 Aligned_cols=94 Identities=36% Similarity=0.641 Sum_probs=80.7
Q ss_pred EEEECCCcChHHHHHHHHc--C--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcc-ccc
Q 017428 162 VVDVGCGIGGSSRYLAKKF--G--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSM-ESG 236 (371)
Q Consensus 162 VLDlG~GtG~~~~~l~~~~--~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~-~~l 236 (371)
|||+|||+|..+..+++.+ + .+++|+|+|+.|++.++++....+. ++++++.|+.++++.+++||+|++. .++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~~~~~~D~v~~~~~~~ 78 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPFSDGKFDLVVCSGLSL 78 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHHHSSSEEEEEE-TTGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcccCCCeeEEEEcCCcc
Confidence 7999999999999999886 3 7999999999999999999988664 7999999999988778899999995 459
Q ss_pred cCcCC--HHHHHHHHHHhcCCCc
Q 017428 237 EHMPD--KSKFVSELARVTAPAG 257 (371)
Q Consensus 237 ~~~~~--~~~~l~~~~~~LkpgG 257 (371)
+|+.+ ...+++++.++|||||
T Consensus 79 ~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 79 HHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhCCCC
Confidence 99864 5789999999999998
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.9e-15 Score=126.56 Aligned_cols=135 Identities=24% Similarity=0.426 Sum_probs=100.5
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 238 (371)
+.++||+|||.|..+..|+++ |..|+++|.|+..++.+++.++..+++ ++..+.|+.+..++ +.||+|++..++++
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~-G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~~-~~yD~I~st~v~~f 106 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQ-GFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDFP-EEYDFIVSTVVFMF 106 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHT-T-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS-T-TTEEEEEEESSGGG
T ss_pred CCcEEEcCCCCcHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhcccc-CCcCEEEEEEEecc
Confidence 789999999999999999998 899999999999999999999888874 99999999887765 78999999888888
Q ss_pred cC--CHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEE
Q 017428 239 MP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKA 316 (371)
Q Consensus 239 ~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~ 316 (371)
++ ..+.+++++...++|||++++..+......+... ..+..+.+.++.+.+. ||+++..
T Consensus 107 L~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~-----------------~~~f~~~~~EL~~~y~--dW~il~y 167 (192)
T PF03848_consen 107 LQRELRPQIIENMKAATKPGGYNLIVTFMETPDYPCPS-----------------PFPFLLKPGELREYYA--DWEILKY 167 (192)
T ss_dssp S-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS-------------------S--B-TTHHHHHTT--TSEEEEE
T ss_pred CCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCC-----------------CCCcccCHHHHHHHhC--CCeEEEE
Confidence 84 4578999999999999999987654322211110 0111245677777776 6777664
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.5e-17 Score=125.37 Aligned_cols=96 Identities=29% Similarity=0.438 Sum_probs=67.0
Q ss_pred EEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCccceEEccccccCc
Q 017428 163 VDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWSMESGEHM 239 (371)
Q Consensus 163 LDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~v~~~~~l~~~ 239 (371)
||||||+|.++..+++.+ ..+|+|+|+|+.|++.+++++...+. .+......+..+.. ...++||+|++..+++|+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGN-DNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC-cceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 799999999999999986 67999999999999999999888764 23444444443332 123699999999999999
Q ss_pred CCHHHHHHHHHHhcCCCcEE
Q 017428 240 PDKSKFVSELARVTAPAGTI 259 (371)
Q Consensus 240 ~~~~~~l~~~~~~LkpgG~l 259 (371)
+++..++++++++|||||+|
T Consensus 80 ~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S-HHHHHHHHTTT-TSS-EE
T ss_pred hhHHHHHHHHHHHcCCCCCC
Confidence 99999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-15 Score=128.12 Aligned_cols=137 Identities=18% Similarity=0.260 Sum_probs=99.2
Q ss_pred EEEeCCHHHHHHHHHHHHHc--CCCCCeEEEEcCCCCCCCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEE
Q 017428 185 QGITLSPVQAQRANALAAAR--GLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262 (371)
Q Consensus 185 ~gvD~s~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 262 (371)
+|+|+|+.|++.|+++.+.. +...+++++++|+.++|+++++||+|++..++++++|+..++++++|+|||||.+++.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEE
Confidence 48999999999998776532 2235799999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCcCccccChHHH-------HHHHHHhhccC-----CCCCCCHHHHHHHHHhCCCceEEEEecCCc
Q 017428 263 TWCHRDLAPSEESLQPWEQ-------ELLKKICDAYY-----LPAWCSTADYVKLLQSLSLEDIKAEDWSQN 322 (371)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~-----~~~~~~~~~~~~ll~~aGF~~v~~~~~~~~ 322 (371)
++..+..... ..+..+.. ..+......+. ...+.+++++.++|+++||+.+......-.
T Consensus 81 d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~g 151 (160)
T PLN02232 81 DFNKSNQSVT-TFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISGG 151 (160)
T ss_pred ECCCCChHHH-HHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcch
Confidence 9875432100 00000000 00000001110 013568999999999999999987665444
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-14 Score=124.39 Aligned_cols=130 Identities=16% Similarity=0.247 Sum_probs=107.3
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 238 (371)
+.+|||+|||+|.++..+++. +.+|+++|+|+.+++.+++++...++ ++++..+|+.+.. .++||+|+++..+++
T Consensus 20 ~~~vLdlG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLKGK-GKCILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGV--RGKFDVILFNPPYLP 94 (179)
T ss_pred CCeEEEeCCChhHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccccc--CCcccEEEECCCCCC
Confidence 678999999999999999987 45899999999999999999987775 6889999987643 468999999987766
Q ss_pred cCC---------------------HHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCC
Q 017428 239 MPD---------------------KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWC 297 (371)
Q Consensus 239 ~~~---------------------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (371)
.++ ...+++++.++|+|||.+++..... .
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~------------------------------~ 144 (179)
T TIGR00537 95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL------------------------------N 144 (179)
T ss_pred CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc------------------------------C
Confidence 643 2567999999999999999976321 1
Q ss_pred CHHHHHHHHHhCCCceEEEEecCCcc
Q 017428 298 STADYVKLLQSLSLEDIKAEDWSQNV 323 (371)
Q Consensus 298 ~~~~~~~ll~~aGF~~v~~~~~~~~~ 323 (371)
...++.+.|+++||....+.....+.
T Consensus 145 ~~~~~~~~l~~~gf~~~~~~~~~~~~ 170 (179)
T TIGR00537 145 GEPDTFDKLDERGFRYEIVAERGLFF 170 (179)
T ss_pred ChHHHHHHHHhCCCeEEEEEEeecCc
Confidence 35677899999999998888776654
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1e-15 Score=136.63 Aligned_cols=146 Identities=18% Similarity=0.200 Sum_probs=104.1
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-----CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF-----GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWS 232 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~-----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~ 232 (371)
++.+|||||||+|.++..+++.. +.+|+|+|+|+.|++.|+++... .++.+...+...++.++++||+|++
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~----~~~~~~~~~~~~l~~~~~~fD~V~~ 135 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR----PGVTFRQAVSDELVAEGERFDVVTS 135 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc----CCCeEEEEecccccccCCCccEEEE
Confidence 36899999999999998887642 35899999999999999887543 3466777777666666789999999
Q ss_pred cccccCcCCH--HHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHh-hc-------cCCCCCCCHHHH
Q 017428 233 MESGEHMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKIC-DA-------YYLPAWCSTADY 302 (371)
Q Consensus 233 ~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~ 302 (371)
+.++||+++. ..++++++++++ |.+++.++...... +...... ..... .. .....+++.+++
T Consensus 136 ~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~-----~~~~~~~-~~~~~~~~~~~~d~~~s~~~~~~~~el 207 (232)
T PRK06202 136 NHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLA-----YALFWAG-TRLLSRSSFVHTDGLLSVRRSYTPAEL 207 (232)
T ss_pred CCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHH-----HHHHHHH-HHHhccCceeeccchHHHHhhcCHHHH
Confidence 9999999875 579999999998 66677665433100 0000000 00000 00 111236899999
Q ss_pred HHHHHhCCCceEEE
Q 017428 303 VKLLQSLSLEDIKA 316 (371)
Q Consensus 303 ~~ll~~aGF~~v~~ 316 (371)
.+++++ ||++...
T Consensus 208 ~~ll~~-Gf~~~~~ 220 (232)
T PRK06202 208 AALAPQ-GWRVERQ 220 (232)
T ss_pred HHHhhC-CCeEEec
Confidence 999999 9997654
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.2e-15 Score=128.81 Aligned_cols=112 Identities=19% Similarity=0.211 Sum_probs=93.2
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (371)
+...+++.+...+ +.+|||+|||+|..+..+++.. ..+|+++|+++.+++.|+++++..++..+++++.+|+.
T Consensus 60 ~~~~~~~~l~~~~-----~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~ 134 (205)
T PRK13944 60 MVAMMCELIEPRP-----GMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGK 134 (205)
T ss_pred HHHHHHHhcCCCC-----CCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcc
Confidence 4555666665544 7899999999999999998876 36899999999999999999998887667999999998
Q ss_pred CCCCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 219 QQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 219 ~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+.....++||+|++..++.+++ +++.+.|+|||+|++..
T Consensus 135 ~~~~~~~~fD~Ii~~~~~~~~~------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 135 RGLEKHAPFDAIIVTAAASTIP------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred cCCccCCCccEEEEccCcchhh------HHHHHhcCcCcEEEEEE
Confidence 7543457899999998887664 46889999999998854
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.2e-14 Score=125.48 Aligned_cols=143 Identities=18% Similarity=0.183 Sum_probs=105.6
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc-----------CCCCCeEEEEcCCCCCCCC-CCc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR-----------GLADKVSFQVGDALQQPFP-DGQ 226 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~-----------~~~~~v~~~~~d~~~~~~~-~~~ 226 (371)
+.+|||+|||.|..+..++++ |.+|+|+|+|+.+++.+.+..... .-..++++.++|+.+++.. .+.
T Consensus 35 ~~rvLd~GCG~G~da~~LA~~-G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~ 113 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLAEQ-GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGP 113 (213)
T ss_pred CCeEEEeCCCchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCC
Confidence 679999999999999999997 899999999999999764321100 0024689999999887532 467
Q ss_pred cceEEccccccCcCC--HHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHH
Q 017428 227 FDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVK 304 (371)
Q Consensus 227 fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (371)
||.|+-..+++|++. ...+++.+.++|||||.+++..+....... .+.+...+++++.+
T Consensus 114 fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~-------------------~gpp~~~~~~eL~~ 174 (213)
T TIGR03840 114 VDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEM-------------------AGPPFSVSPAEVEA 174 (213)
T ss_pred cCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCC-------------------CCcCCCCCHHHHHH
Confidence 999999998999953 467999999999999998887665432110 11122468999999
Q ss_pred HHHhCCCceEEEEecCCc
Q 017428 305 LLQSLSLEDIKAEDWSQN 322 (371)
Q Consensus 305 ll~~aGF~~v~~~~~~~~ 322 (371)
++.. +|.+..++....+
T Consensus 175 ~f~~-~~~i~~~~~~~~~ 191 (213)
T TIGR03840 175 LYGG-HYEIELLESRDVL 191 (213)
T ss_pred HhcC-CceEEEEeecccc
Confidence 8863 5666666554433
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.6e-15 Score=146.23 Aligned_cols=140 Identities=19% Similarity=0.283 Sum_probs=108.5
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC--CCCCCCccceEEccccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ--QPFPDGQFDLVWSMESG 236 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~fD~v~~~~~l 236 (371)
+.+|||||||+|.++..+++. ..+|+|+|+++.+++.+++.. +..+++.++++|+.. .++++++||+|++..++
T Consensus 38 ~~~vLDlGcG~G~~~~~la~~-~~~v~giD~s~~~l~~a~~~~---~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l 113 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELAKK-AGQVIALDFIESVIKKNESIN---GHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLL 113 (475)
T ss_pred CCEEEEeCCCcCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHh---ccCCceEEEEecccccccCCCCCCEEEEehhhhH
Confidence 679999999999999999987 579999999999998876532 223579999999964 46778899999999999
Q ss_pred cCcCC--HHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceE
Q 017428 237 EHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDI 314 (371)
Q Consensus 237 ~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v 314 (371)
+|+++ ...++++++++|||||++++.+.+........ .......+.....|.+++.++||...
T Consensus 114 ~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~f~~~~~~~~ 178 (475)
T PLN02336 114 MYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSK---------------RKNNPTHYREPRFYTKVFKECHTRDE 178 (475)
T ss_pred HhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCccc---------------ccCCCCeecChHHHHHHHHHheeccC
Confidence 99976 47899999999999999999886532211000 00111123467789999999999876
Q ss_pred EEE
Q 017428 315 KAE 317 (371)
Q Consensus 315 ~~~ 317 (371)
+..
T Consensus 179 ~~~ 181 (475)
T PLN02336 179 DGN 181 (475)
T ss_pred CCC
Confidence 543
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.5e-14 Score=125.47 Aligned_cols=145 Identities=21% Similarity=0.277 Sum_probs=103.8
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-C-CCCCCccceEEccccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-Q-PFPDGQFDLVWSMESG 236 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~-~~~~~~fD~v~~~~~l 236 (371)
+.+|||+|||+|.++..+++..+..++|+|+|+.+++.+++ .+++++++|+.+ + ++++++||+|+++.++
T Consensus 14 ~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~--------~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l 85 (194)
T TIGR02081 14 GSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA--------RGVNVIQGDLDEGLEAFPDKSFDYVILSQTL 85 (194)
T ss_pred CCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH--------cCCeEEEEEhhhcccccCCCCcCEEEEhhHh
Confidence 67999999999999999887656789999999999988864 247788889875 3 3667899999999999
Q ss_pred cCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHH-Hh-------hcc-C--CCCCCCHHHHHHH
Q 017428 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKK-IC-------DAY-Y--LPAWCSTADYVKL 305 (371)
Q Consensus 237 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------~~~-~--~~~~~~~~~~~~l 305 (371)
+|++++..+++++.+.+++ +++....... .. ....++.. .. ..+ . ...+++.+++.++
T Consensus 86 ~~~~d~~~~l~e~~r~~~~---~ii~~p~~~~-------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l 154 (194)
T TIGR02081 86 QATRNPEEILDEMLRVGRH---AIVSFPNFGY-------WR-VRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDL 154 (194)
T ss_pred HcCcCHHHHHHHHHHhCCe---EEEEcCChhH-------HH-HHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHH
Confidence 9999999999999887654 3333211100 00 00000000 00 000 0 1136799999999
Q ss_pred HHhCCCceEEEEecCCc
Q 017428 306 LQSLSLEDIKAEDWSQN 322 (371)
Q Consensus 306 l~~aGF~~v~~~~~~~~ 322 (371)
++++||++++...+...
T Consensus 155 l~~~Gf~v~~~~~~~~~ 171 (194)
T TIGR02081 155 CGELNLRILDRAAFDVD 171 (194)
T ss_pred HHHCCCEEEEEEEeccc
Confidence 99999999998877444
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.6e-14 Score=115.60 Aligned_cols=112 Identities=20% Similarity=0.194 Sum_probs=90.4
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-
Q 017428 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ- 220 (371)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~- 220 (371)
..++..+.+.+ +.+|||+|||+|.++..+++.. +.+|+++|+++.+++.++++++..+.. ++.++..|+...
T Consensus 9 ~~~~~~~~~~~-----~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~ 82 (124)
T TIGR02469 9 ALTLSKLRLRP-----GDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEAL 82 (124)
T ss_pred HHHHHHcCCCC-----CCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccC
Confidence 33455555443 6799999999999999999986 579999999999999999998887764 789999987652
Q ss_pred CCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 221 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+...++||+|++..... ....++++++++|+|||++++.-
T Consensus 83 ~~~~~~~D~v~~~~~~~---~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 83 EDSLPEPDRVFIGGSGG---LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred hhhcCCCCEEEECCcch---hHHHHHHHHHHHcCCCCEEEEEe
Confidence 22346899999876543 34689999999999999999864
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.9e-15 Score=133.18 Aligned_cols=105 Identities=20% Similarity=0.329 Sum_probs=86.3
Q ss_pred CCEEEEECCCcCh----HHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHH----HcC-------------------
Q 017428 159 PKNVVDVGCGIGG----SSRYLAKKF------GAKCQGITLSPVQAQRANALAA----ARG------------------- 205 (371)
Q Consensus 159 ~~~VLDlG~GtG~----~~~~l~~~~------~~~v~gvD~s~~~~~~a~~~~~----~~~------------------- 205 (371)
+.+|+|+|||||. +++.+++.+ +.+|+|+|+|+.|++.|++.+- -.+
T Consensus 100 ~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v 179 (264)
T smart00138 100 RVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRV 179 (264)
T ss_pred CEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEE
Confidence 6899999999997 566666643 2589999999999999997531 011
Q ss_pred ---CCCCeEEEEcCCCCCCCCCCccceEEccccccCcCC--HHHHHHHHHHhcCCCcEEEEEe
Q 017428 206 ---LADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 206 ---~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+..+|.|.+.|+.+.+++.++||+|+|.++++|+++ ...++++++++|+|||+|++..
T Consensus 180 ~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 180 KPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred ChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 124799999999998777889999999999999964 4689999999999999999964
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.2e-14 Score=123.00 Aligned_cols=137 Identities=13% Similarity=0.184 Sum_probs=105.9
Q ss_pred HHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-CC
Q 017428 146 LRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-PF 222 (371)
Q Consensus 146 l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~ 222 (371)
+..+.+.+ +.+|||+|||+|.++..++... +.+|+++|+++.+++.++++++..++.+++.++.+|+.+. +.
T Consensus 33 l~~l~~~~-----~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~ 107 (198)
T PRK00377 33 LSKLRLRK-----GDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFT 107 (198)
T ss_pred HHHcCCCC-----cCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhh
Confidence 44555544 8899999999999999998765 4689999999999999999999888667899999998763 22
Q ss_pred CCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHH
Q 017428 223 PDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADY 302 (371)
Q Consensus 223 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (371)
..+.||+|++.. ...+...+++.+.++|+|||++++.... ..+..+.
T Consensus 108 ~~~~~D~V~~~~---~~~~~~~~l~~~~~~LkpgG~lv~~~~~------------------------------~~~~~~~ 154 (198)
T PRK00377 108 INEKFDRIFIGG---GSEKLKEIISASWEIIKKGGRIVIDAIL------------------------------LETVNNA 154 (198)
T ss_pred cCCCCCEEEECC---CcccHHHHHHHHHHHcCCCcEEEEEeec------------------------------HHHHHHH
Confidence 246899999854 3356788999999999999999874310 1134567
Q ss_pred HHHHHhCCCceEEEEecCC
Q 017428 303 VKLLQSLSLEDIKAEDWSQ 321 (371)
Q Consensus 303 ~~ll~~aGF~~v~~~~~~~ 321 (371)
...|+++|| .+++..+..
T Consensus 155 ~~~l~~~g~-~~~~~~~~~ 172 (198)
T PRK00377 155 LSALENIGF-NLEITEVII 172 (198)
T ss_pred HHHHHHcCC-CeEEEEEeh
Confidence 788899999 455554443
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.7e-14 Score=125.02 Aligned_cols=137 Identities=11% Similarity=0.165 Sum_probs=98.2
Q ss_pred HcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC----CC
Q 017428 148 FAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ----PF 222 (371)
Q Consensus 148 ~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~ 222 (371)
.+++++ +.+|||+|||+|.++..+++.. ...|+++|+++.|++.+.++++.. .|+.++.+|+... ++
T Consensus 67 ~l~i~~-----g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~l 138 (226)
T PRK04266 67 NFPIKK-----GSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAHV 138 (226)
T ss_pred hCCCCC-----CCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhhc
Confidence 455554 8999999999999999999986 468999999999999887776543 4799999998752 22
Q ss_pred CCCccceEEccccccCcCCH---HHHHHHHHHhcCCCcEEEEEeccCC-CCCcCccccChHHHHHHHHHhhccCCCCCCC
Q 017428 223 PDGQFDLVWSMESGEHMPDK---SKFVSELARVTAPAGTIIIVTWCHR-DLAPSEESLQPWEQELLKKICDAYYLPAWCS 298 (371)
Q Consensus 223 ~~~~fD~v~~~~~l~~~~~~---~~~l~~~~~~LkpgG~l~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (371)
.++||+|++. +.++ ..++++++++|||||.+++...... +... . ... .
T Consensus 139 -~~~~D~i~~d-----~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~-----~--~~~---------------~ 190 (226)
T PRK04266 139 -VEKVDVIYQD-----VAQPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTK-----D--PKE---------------I 190 (226)
T ss_pred -cccCCEEEEC-----CCChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcC-----C--HHH---------------H
Confidence 3569999853 2333 3468999999999999999421100 0000 0 000 1
Q ss_pred HHHHHHHHHhCCCceEEEEecC
Q 017428 299 TADYVKLLQSLSLEDIKAEDWS 320 (371)
Q Consensus 299 ~~~~~~ll~~aGF~~v~~~~~~ 320 (371)
.++..+.|+++||+.++..+..
T Consensus 191 ~~~~~~~l~~aGF~~i~~~~l~ 212 (226)
T PRK04266 191 FKEEIRKLEEGGFEILEVVDLE 212 (226)
T ss_pred HHHHHHHHHHcCCeEEEEEcCC
Confidence 1344599999999999887653
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.7e-14 Score=118.30 Aligned_cols=145 Identities=23% Similarity=0.320 Sum_probs=108.5
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--CCCCCccceEEcccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--PFPDGQFDLVWSMES 235 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD~v~~~~~ 235 (371)
|+.+|||+|||.|.+...|.+..+....|+|++++.+..+-+ ..+.++++|+++. .|++++||.|+++.+
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~--------rGv~Viq~Dld~gL~~f~d~sFD~VIlsqt 84 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVA--------RGVSVIQGDLDEGLADFPDQSFDYVILSQT 84 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHH--------cCCCEEECCHHHhHhhCCCCCccEEehHhH
Confidence 589999999999999999988668899999999998877665 3577899999773 489999999999999
Q ss_pred ccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHH----------hhc-cCCC--CCCCHHHH
Q 017428 236 GEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKI----------CDA-YYLP--AWCSTADY 302 (371)
Q Consensus 236 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~-~~~~--~~~~~~~~ 302 (371)
|.++.++..+++++.|+ |...++.-.++. -|..++--.. ... |..| ++.|..++
T Consensus 85 LQ~~~~P~~vL~EmlRV---gr~~IVsFPNFg----------~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DF 151 (193)
T PF07021_consen 85 LQAVRRPDEVLEEMLRV---GRRAIVSFPNFG----------HWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDF 151 (193)
T ss_pred HHhHhHHHHHHHHHHHh---cCeEEEEecChH----------HHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHH
Confidence 99999999999999877 445555432211 1111110000 011 1122 36899999
Q ss_pred HHHHHhCCCceEEEEecCCcc
Q 017428 303 VKLLQSLSLEDIKAEDWSQNV 323 (371)
Q Consensus 303 ~~ll~~aGF~~v~~~~~~~~~ 323 (371)
+++.++.|+.+++...+...-
T Consensus 152 e~lc~~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 152 EDLCRELGIRIEERVFLDGGR 172 (193)
T ss_pred HHHHHHCCCEEEEEEEEcCCC
Confidence 999999999999887666544
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.6e-15 Score=144.13 Aligned_cols=106 Identities=21% Similarity=0.211 Sum_probs=92.1
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCccceEEcccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWSMES 235 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~v~~~~~ 235 (371)
+.+|||+|||+|..+..+++.+ +.+|+|+|+|+.|++.|+++....+ .++.++++|+.+++ +++++||+|+++.+
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dLp~~fedeSFDvVVsn~v 496 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINLSSSFEKESVDTIVYSSI 496 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhCccccCCCCEEEEEEchH
Confidence 7899999999999999998877 6899999999999999998876554 36888999998876 77899999999988
Q ss_pred ccCc-------------CCHHHHHHHHHHhcCCCcEEEEEeccC
Q 017428 236 GEHM-------------PDKSKFVSELARVTAPAGTIIIVTWCH 266 (371)
Q Consensus 236 l~~~-------------~~~~~~l~~~~~~LkpgG~l~i~~~~~ 266 (371)
+|++ .+...++++++++|||||.+++.+...
T Consensus 497 LH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~ 540 (677)
T PRK06922 497 LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIM 540 (677)
T ss_pred HHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCcc
Confidence 8865 245789999999999999999988543
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.2e-15 Score=122.71 Aligned_cols=130 Identities=22% Similarity=0.349 Sum_probs=96.4
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 238 (371)
-.++||+|||.|.++..|+.+. .+++++|+|+..++.|++++... ++|+|.+.|+.+. .|.++||+|++..++++
T Consensus 44 y~~alEvGCs~G~lT~~LA~rC-d~LlavDis~~Al~~Ar~Rl~~~---~~V~~~~~dvp~~-~P~~~FDLIV~SEVlYY 118 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPRC-DRLLAVDISPRALARARERLAGL---PHVEWIQADVPEF-WPEGRFDLIVLSEVLYY 118 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGGE-EEEEEEES-HHHHHHHHHHTTT----SSEEEEES-TTT----SS-EEEEEEES-GGG
T ss_pred cceeEecCCCccHHHHHHHHhh-CceEEEeCCHHHHHHHHHhcCCC---CCeEEEECcCCCC-CCCCCeeEEEEehHhHc
Confidence 6899999999999999999984 68999999999999999998643 5899999999775 46799999999999999
Q ss_pred cCC---HHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEE
Q 017428 239 MPD---KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIK 315 (371)
Q Consensus 239 ~~~---~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~ 315 (371)
+.+ ...++.++...|+|||.|++..+.. .....|+. .+..+.+.++|.+. |..|+
T Consensus 119 L~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd-------------------~~c~~wgh--~~ga~tv~~~~~~~-~~~~~ 176 (201)
T PF05401_consen 119 LDDAEDLRAALDRLVAALAPGGHLVFGHARD-------------------ANCRRWGH--AAGAETVLEMLQEH-LTEVE 176 (201)
T ss_dssp SSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H-------------------HHHHHTT---S--HHHHHHHHHHH-SEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCCEEEEEEecC-------------------CcccccCc--ccchHHHHHHHHHH-hhhee
Confidence 975 3578999999999999999988521 12222332 34788888888876 44333
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.4e-14 Score=122.27 Aligned_cols=140 Identities=20% Similarity=0.197 Sum_probs=104.7
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCC--------------CCCeEEEEcCCCCCCCC-
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGL--------------ADKVSFQVGDALQQPFP- 223 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--------------~~~v~~~~~d~~~~~~~- 223 (371)
+.+|||+|||.|..+..|+++ |.+|+|||+|+..++.+.. +.++ ..+|++.++|+.+++..
T Consensus 38 ~~rvL~~gCG~G~da~~LA~~-G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWLAEQ-GHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCeEEEeCCCChHhHHHHHhC-CCeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcccCCCccc
Confidence 679999999999999999987 8999999999999998643 1222 24689999999987532
Q ss_pred CCccceEEccccccCcC--CHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHH
Q 017428 224 DGQFDLVWSMESGEHMP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTAD 301 (371)
Q Consensus 224 ~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (371)
.+.||.|+-..+++|++ ....+++.+.++|+|||.+++.......... .+.|...+.++
T Consensus 114 ~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~-------------------~gPp~~~~~~e 174 (218)
T PRK13255 114 LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEEL-------------------AGPPFSVSDEE 174 (218)
T ss_pred CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccC-------------------CCCCCCCCHHH
Confidence 26899999999999995 3478999999999999976665543321110 11122468999
Q ss_pred HHHHHHhCCCceEEEEecCCc
Q 017428 302 YVKLLQSLSLEDIKAEDWSQN 322 (371)
Q Consensus 302 ~~~ll~~aGF~~v~~~~~~~~ 322 (371)
+.+++.. +|.+...+....+
T Consensus 175 l~~~~~~-~~~i~~~~~~~~~ 194 (218)
T PRK13255 175 VEALYAG-CFEIELLERQDVL 194 (218)
T ss_pred HHHHhcC-CceEEEeeecccc
Confidence 9999953 3777766655444
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.6e-14 Score=126.54 Aligned_cols=104 Identities=22% Similarity=0.330 Sum_probs=88.2
Q ss_pred CCEEEEECCCcChH-HHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHH-cCCCCCeEEEEcCCCCCCCCCCccceEEccc
Q 017428 159 PKNVVDVGCGIGGS-SRYLAKKF--GAKCQGITLSPVQAQRANALAAA-RGLADKVSFQVGDALQQPFPDGQFDLVWSME 234 (371)
Q Consensus 159 ~~~VLDlG~GtG~~-~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~-~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~ 234 (371)
+.+|+|||||.|.+ ++.++... +.+++|+|+++++++.|++.+.. .++.++++|..+|+.+.....+.||+|++.
T Consensus 124 p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~- 202 (296)
T PLN03075 124 PTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA- 202 (296)
T ss_pred CCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe-
Confidence 78999999997754 44444433 67899999999999999999964 788888999999998864234789999999
Q ss_pred cccCc--CCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 235 SGEHM--PDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 235 ~l~~~--~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+++++ +++.++++++.+.|+|||.+++-.
T Consensus 203 ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 203 ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 88888 688999999999999999999965
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-14 Score=126.85 Aligned_cols=104 Identities=24% Similarity=0.303 Sum_probs=88.4
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC-CCCC--CCCCccceEEccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA-LQQP--FPDGQFDLVWSME 234 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~--~~~~~fD~v~~~~ 234 (371)
+.+|||+|||+|..+..+++.+ +.+|+|+|+|+.+++.|++++...++ +++.++++|+ ..++ +++++||+|++..
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL-TNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC-CCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 6899999999999999999876 57899999999999999999988877 5799999999 6655 6678999999875
Q ss_pred cccCcC--------CHHHHHHHHHHhcCCCcEEEEEe
Q 017428 235 SGEHMP--------DKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 235 ~l~~~~--------~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
...+.. ....++++++++|||||.+++..
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 443221 13678999999999999999975
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.6e-14 Score=123.87 Aligned_cols=112 Identities=21% Similarity=0.299 Sum_probs=92.3
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC
Q 017428 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA 217 (371)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~ 217 (371)
.+...++..+.+.+ +.+|||||||+|..+..+++.. ..+|+++|+++.+++.++++++..++ .++.++.+|+
T Consensus 63 ~~~~~~~~~l~~~~-----g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~-~~v~~~~gd~ 136 (212)
T PRK13942 63 HMVAIMCELLDLKE-----GMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY-DNVEVIVGDG 136 (212)
T ss_pred HHHHHHHHHcCCCC-----cCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEEECCc
Confidence 35566666666654 8999999999999999998876 36999999999999999999998887 5899999998
Q ss_pred CCCCCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 218 LQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 218 ~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
.....+.++||+|++.....++ .+.+.+.|||||++++..
T Consensus 137 ~~~~~~~~~fD~I~~~~~~~~~------~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 137 TLGYEENAPYDRIYVTAAGPDI------PKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred ccCCCcCCCcCEEEECCCcccc------hHHHHHhhCCCcEEEEEE
Confidence 7765556889999988766544 246777899999998864
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=8e-14 Score=114.06 Aligned_cols=129 Identities=24% Similarity=0.389 Sum_probs=108.0
Q ss_pred CEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccC
Q 017428 160 KNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (371)
Q Consensus 160 ~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 238 (371)
.+|||+|||.|.+...|++.- ...++|+|+|+..++.|+..++..+.++.|+|.+.|+.+..+..+.||+|+--..+-.
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DA 148 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDA 148 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceee
Confidence 399999999999999999875 4569999999999999999999999987799999999997777789999987666555
Q ss_pred c---CC-----HHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCC
Q 017428 239 M---PD-----KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLS 310 (371)
Q Consensus 239 ~---~~-----~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aG 310 (371)
+ ++ +...+..+.+.|+|||+++|... .+|.+++.+.++.-|
T Consensus 149 isLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSC-------------------------------N~T~dELv~~f~~~~ 197 (227)
T KOG1271|consen 149 ISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSC-------------------------------NFTKDELVEEFENFN 197 (227)
T ss_pred eecCCCCcccceeeehhhHhhccCCCcEEEEEec-------------------------------CccHHHHHHHHhcCC
Confidence 4 12 24578889999999999999763 247889999999999
Q ss_pred CceEEEEec
Q 017428 311 LEDIKAEDW 319 (371)
Q Consensus 311 F~~v~~~~~ 319 (371)
|+.......
T Consensus 198 f~~~~tvp~ 206 (227)
T KOG1271|consen 198 FEYLSTVPT 206 (227)
T ss_pred eEEEEeecc
Confidence 987765543
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.7e-13 Score=122.42 Aligned_cols=139 Identities=24% Similarity=0.386 Sum_probs=107.0
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 017428 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (371)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (371)
.++..++..+. . .+.+|||+|||+|.++..+++.. +.+++|+|+++.+++.+++++...++. ++.++.+|+.
T Consensus 75 ~l~~~~l~~~~-~-----~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~ 147 (251)
T TIGR03534 75 ELVEAALERLK-K-----GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWF 147 (251)
T ss_pred HHHHHHHHhcc-c-----CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchh
Confidence 34455555443 1 25689999999999999999876 679999999999999999999888874 7999999987
Q ss_pred CCCCCCCccceEEccccccC------cC--------------------CHHHHHHHHHHhcCCCcEEEEEeccCCCCCcC
Q 017428 219 QQPFPDGQFDLVWSMESGEH------MP--------------------DKSKFVSELARVTAPAGTIIIVTWCHRDLAPS 272 (371)
Q Consensus 219 ~~~~~~~~fD~v~~~~~l~~------~~--------------------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~ 272 (371)
+ ++++++||+|+++-.+.. +. ....+++++.++|+|||.+++...
T Consensus 148 ~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~-------- 218 (251)
T TIGR03534 148 E-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG-------- 218 (251)
T ss_pred c-cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC--------
Confidence 6 456789999998533221 10 123678999999999999988430
Q ss_pred ccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEEE
Q 017428 273 EESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAE 317 (371)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~ 317 (371)
+...+++.++|+++||..+++.
T Consensus 219 -----------------------~~~~~~~~~~l~~~gf~~v~~~ 240 (251)
T TIGR03534 219 -----------------------YDQGEAVRALFEAAGFADVETR 240 (251)
T ss_pred -----------------------ccHHHHHHHHHHhCCCCceEEE
Confidence 1245678899999999977663
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=9.3e-15 Score=123.84 Aligned_cols=155 Identities=22% Similarity=0.255 Sum_probs=113.5
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (371)
++++++..+...+ -.++||+|||||..+..+... -.+++|||+|..|++.|.++ |+.+. ..+.|+...
T Consensus 113 ~l~emI~~~~~g~-----F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~eK----g~YD~--L~~Aea~~F 180 (287)
T COG4976 113 LLAEMIGKADLGP-----FRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAHEK----GLYDT--LYVAEAVLF 180 (287)
T ss_pred HHHHHHHhccCCc-----cceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHHhc----cchHH--HHHHHHHHH
Confidence 5667777666553 689999999999999999887 56899999999999998874 33222 234443322
Q ss_pred --CCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCC
Q 017428 221 --PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCS 298 (371)
Q Consensus 221 --~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (371)
...++.||+|.+..++.++.+.+.++.-+...|+|||.+.++.-...... .-.+.+. ...-++
T Consensus 181 l~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~--~f~l~ps-------------~RyAH~ 245 (287)
T COG4976 181 LEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDG--GFVLGPS-------------QRYAHS 245 (287)
T ss_pred hhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCC--Ceecchh-------------hhhccc
Confidence 13468899999999999999999999999999999999999763322210 0001100 001246
Q ss_pred HHHHHHHHHhCCCceEEEEecCCc
Q 017428 299 TADYVKLLQSLSLEDIKAEDWSQN 322 (371)
Q Consensus 299 ~~~~~~ll~~aGF~~v~~~~~~~~ 322 (371)
..-+..+++..||+++++++.+..
T Consensus 246 ~~YVr~~l~~~Gl~~i~~~~ttiR 269 (287)
T COG4976 246 ESYVRALLAASGLEVIAIEDTTIR 269 (287)
T ss_pred hHHHHHHHHhcCceEEEeecccch
Confidence 778899999999999999876554
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.6e-13 Score=120.26 Aligned_cols=146 Identities=18% Similarity=0.202 Sum_probs=105.3
Q ss_pred HHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC
Q 017428 142 IEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP 221 (371)
Q Consensus 142 ~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 221 (371)
+...+....+.+ +.+|||+|||+|.++..++.....+|+++|+++.+++.+++++...++ ++.++.+|+.+.
T Consensus 25 l~~~l~~~~~~~-----~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~- 96 (223)
T PRK14967 25 LADALAAEGLGP-----GRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARA- 96 (223)
T ss_pred HHHHHHhcccCC-----CCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhh-
Confidence 344444444443 789999999999999998875224899999999999999999887775 588899998763
Q ss_pred CCCCccceEEccccccCcC---------------------CHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHH
Q 017428 222 FPDGQFDLVWSMESGEHMP---------------------DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWE 280 (371)
Q Consensus 222 ~~~~~fD~v~~~~~l~~~~---------------------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~ 280 (371)
+++++||+|+++-....-. ....+++++.++|||||.+++.....
T Consensus 97 ~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~-------------- 162 (223)
T PRK14967 97 VEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL-------------- 162 (223)
T ss_pred ccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc--------------
Confidence 4567899999874322111 13567889999999999999865211
Q ss_pred HHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEEEecCCcccC
Q 017428 281 QELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAP 325 (371)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~~~~~~ 325 (371)
....++.+.+++.||..........++.+
T Consensus 163 ----------------~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 191 (223)
T PRK14967 163 ----------------SGVERTLTRLSEAGLDAEVVASQWIPFGP 191 (223)
T ss_pred ----------------cCHHHHHHHHHHCCCCeEEEEeeccCccH
Confidence 12345667778888876665555555444
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.2e-14 Score=122.45 Aligned_cols=111 Identities=23% Similarity=0.315 Sum_probs=91.1
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (371)
....++..+.+.+ +.+|||||||+|..+..+++..+ .+|+++|+++.+++.|+++++..++ .+++++.+|+.
T Consensus 65 ~~~~~~~~l~~~~-----~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~d~~ 138 (215)
T TIGR00080 65 MVAMMTELLELKP-----GMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-DNVIVIVGDGT 138 (215)
T ss_pred HHHHHHHHhCCCC-----cCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEECCcc
Confidence 4556666666654 89999999999999999998763 4699999999999999999999887 58999999997
Q ss_pred CCCCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 219 QQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 219 ~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+.....++||+|++.....++ .+.+.+.|+|||++++..
T Consensus 139 ~~~~~~~~fD~Ii~~~~~~~~------~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 139 QGWEPLAPYDRIYVTAAGPKI------PEALIDQLKEGGILVMPV 177 (215)
T ss_pred cCCcccCCCCEEEEcCCcccc------cHHHHHhcCcCcEEEEEE
Confidence 754345789999987665544 356788999999999864
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2e-13 Score=117.69 Aligned_cols=129 Identities=21% Similarity=0.349 Sum_probs=102.0
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCC-eEEEEcCCCCCCCCCCccceEEccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADK-VSFQVGDALQQPFPDGQFDLVWSMESG 236 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~v~~~~~l 236 (371)
++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.+++++...++.++ +.++..|+.+. +.+++||+|+++..+
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~d~vi~n~p~ 100 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP-FRGDKFDVILFNPPY 100 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc-ccccCceEEEECCCc
Confidence 3789999999999999999988 88999999999999999999988776433 88999998763 445689999987554
Q ss_pred cCc---------------------CCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCC
Q 017428 237 EHM---------------------PDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPA 295 (371)
Q Consensus 237 ~~~---------------------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (371)
... .....+++++.++|||||.+++....
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~------------------------------ 150 (188)
T PRK14968 101 LPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS------------------------------ 150 (188)
T ss_pred CCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc------------------------------
Confidence 331 11356899999999999999886521
Q ss_pred CCCHHHHHHHHHhCCCceEEEEe
Q 017428 296 WCSTADYVKLLQSLSLEDIKAED 318 (371)
Q Consensus 296 ~~~~~~~~~ll~~aGF~~v~~~~ 318 (371)
....+++.++++++||.++.+..
T Consensus 151 ~~~~~~l~~~~~~~g~~~~~~~~ 173 (188)
T PRK14968 151 LTGEDEVLEYLEKLGFEAEVVAE 173 (188)
T ss_pred cCCHHHHHHHHHHCCCeeeeeee
Confidence 12346788899999998776543
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.5e-14 Score=127.87 Aligned_cols=94 Identities=30% Similarity=0.429 Sum_probs=79.9
Q ss_pred CCEEEEECCCcChHHHHHHHHcC----CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFG----AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSME 234 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~----~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~ 234 (371)
..+|||+|||+|.++..+++.+. ..++|+|+|+.+++.|+++. +++.+.++|+.++|+++++||+|++..
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~lp~~~~sfD~I~~~~ 159 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRLPFADQSLDAIIRIY 159 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccCCCcCCceeEEEEec
Confidence 57899999999999999988652 47999999999999997652 478999999999999999999999765
Q ss_pred cccCcCCHHHHHHHHHHhcCCCcEEEEEecc
Q 017428 235 SGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 235 ~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
.- ..+++++|+|||||+++++...
T Consensus 160 ~~-------~~~~e~~rvLkpgG~li~~~p~ 183 (272)
T PRK11088 160 AP-------CKAEELARVVKPGGIVITVTPG 183 (272)
T ss_pred CC-------CCHHHHHhhccCCCEEEEEeCC
Confidence 41 2468899999999999998743
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.8e-14 Score=121.61 Aligned_cols=104 Identities=27% Similarity=0.348 Sum_probs=87.7
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---CCCCccceEEccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---FPDGQFDLVWSME 234 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~v~~~~ 234 (371)
..+|||||||+|.++..+++.+ +..|+|+|+++.+++.|++++...++. |++++.+|+.+.+ ++++++|.|+++.
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 5689999999999999999987 679999999999999999999888874 8999999997643 4557899999876
Q ss_pred cccCcCCH--------HHHHHHHHHhcCCCcEEEEEe
Q 017428 235 SGEHMPDK--------SKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 235 ~l~~~~~~--------~~~l~~~~~~LkpgG~l~i~~ 263 (371)
...+.... ..+++++.++|||||.|++..
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence 44332211 578999999999999999875
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.53 E-value=2e-13 Score=128.04 Aligned_cols=114 Identities=22% Similarity=0.259 Sum_probs=92.3
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC
Q 017428 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF 222 (371)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 222 (371)
..++.....++ +.+|||+|||+|.+++.++.. +..++|+|+++.|+..++.+++..++.+ +.+..+|+.++++
T Consensus 172 ~~~~~l~~~~~-----g~~vLDp~cGtG~~lieaa~~-~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~~ 244 (329)
T TIGR01177 172 RAMVNLARVTE-----GDRVLDPFCGTGGFLIEAGLM-GAKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLPL 244 (329)
T ss_pred HHHHHHhCCCC-----cCEEEECCCCCCHHHHHHHHh-CCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCCc
Confidence 33444444443 789999999999999887664 8899999999999999999999988854 8899999999888
Q ss_pred CCCccceEEccccccC--------cCC-HHHHHHHHHHhcCCCcEEEEEe
Q 017428 223 PDGQFDLVWSMESGEH--------MPD-KSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 223 ~~~~fD~v~~~~~l~~--------~~~-~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
++++||+|+++-.+.. ..+ ...+++++.++|||||++++..
T Consensus 245 ~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~ 294 (329)
T TIGR01177 245 SSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAV 294 (329)
T ss_pred ccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEE
Confidence 7889999998632211 112 4789999999999999999875
|
This family is found exclusively in the Archaea. |
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.8e-13 Score=123.59 Aligned_cols=101 Identities=27% Similarity=0.344 Sum_probs=83.1
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 238 (371)
+.+|||+|||+|.+++.+++....+|+|+|+++.+++.|++++..+++..++.+...+... ..+++||+|+++....
T Consensus 160 g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~--~~~~~fDlVvan~~~~- 236 (288)
T TIGR00406 160 DKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ--PIEGKADVIVANILAE- 236 (288)
T ss_pred CCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc--ccCCCceEEEEecCHH-
Confidence 7899999999999998887653458999999999999999999988887777777776332 3357899999875432
Q ss_pred cCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 239 MPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 239 ~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
....++.++.++|||||++++...
T Consensus 237 --~l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 237 --VIKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred --HHHHHHHHHHHHcCCCcEEEEEeC
Confidence 346789999999999999999763
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.5e-12 Score=119.60 Aligned_cols=104 Identities=20% Similarity=0.294 Sum_probs=85.3
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccc---
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSME--- 234 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~--- 234 (371)
..+|||+|||+|.++..++..+ +.+|+|+|+|+.+++.|+++++..++..++.++.+|+.+ +++.++||+|+++-
T Consensus 115 ~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi 193 (284)
T TIGR00536 115 ILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYI 193 (284)
T ss_pred CCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCC
Confidence 3689999999999999999987 579999999999999999999988886679999999876 34445899999851
Q ss_pred ----------cccCcC------------CHHHHHHHHHHhcCCCcEEEEEe
Q 017428 235 ----------SGEHMP------------DKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 235 ----------~l~~~~------------~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
++.|-+ ....+++++.++|+|||++++..
T Consensus 194 ~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~ 244 (284)
T TIGR00536 194 DEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEI 244 (284)
T ss_pred CcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 222211 24678999999999999988754
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.2e-13 Score=113.13 Aligned_cols=103 Identities=31% Similarity=0.466 Sum_probs=86.7
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
..+|||+|||+|..+..+++.. ..+|+++|+++.+++.++++++.+++.. ++++..|..+. .++++||+|+++--++
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~-~~~~~fD~Iv~NPP~~ 109 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEA-LPDGKFDLIVSNPPFH 109 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTT-CCTTCEEEEEE---SB
T ss_pred CCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccc-ccccccccccc-ccccceeEEEEccchh
Confidence 7899999999999999999976 4479999999999999999999999865 99999998764 3468999999987665
Q ss_pred CcCC-----HHHHHHHHHHhcCCCcEEEEEe
Q 017428 238 HMPD-----KSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 238 ~~~~-----~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
.-.+ ...+++++.+.|+|||.++++.
T Consensus 110 ~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 110 AGGDDGLDLLRDFIEQARRYLKPGGRLFLVI 140 (170)
T ss_dssp TTSHCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhhHHHHHHHHHHhccCCCEEEEEe
Confidence 5433 4789999999999999998765
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.2e-13 Score=120.91 Aligned_cols=120 Identities=21% Similarity=0.254 Sum_probs=92.2
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
++.+|||+|||+|.+++.+++....+|+|+|+|+.+++.|++++..+++..++.+..+| .+||+|+++...
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~--------~~fD~Vvani~~- 189 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD--------LKADVIVANILA- 189 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC--------CCcCEEEEcCcH-
Confidence 37899999999999998877653346999999999999999999888764444433322 279999986432
Q ss_pred CcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEEE
Q 017428 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAE 317 (371)
Q Consensus 238 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~ 317 (371)
.....++.++.++|||||++++..... ...+++.+.+++.||.++...
T Consensus 190 --~~~~~l~~~~~~~LkpgG~lilsgi~~------------------------------~~~~~v~~~l~~~Gf~~~~~~ 237 (250)
T PRK00517 190 --NPLLELAPDLARLLKPGGRLILSGILE------------------------------EQADEVLEAYEEAGFTLDEVL 237 (250)
T ss_pred --HHHHHHHHHHHHhcCCCcEEEEEECcH------------------------------hhHHHHHHHHHHCCCEEEEEE
Confidence 234678999999999999999975321 135678889999999988765
Q ss_pred e
Q 017428 318 D 318 (371)
Q Consensus 318 ~ 318 (371)
.
T Consensus 238 ~ 238 (250)
T PRK00517 238 E 238 (250)
T ss_pred E
Confidence 4
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.2e-14 Score=121.09 Aligned_cols=153 Identities=16% Similarity=0.252 Sum_probs=111.3
Q ss_pred CCEEEEECCCcChHHHHHHHHc-C--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC----CCCCCccceEE
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-G--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ----PFPDGQFDLVW 231 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~fD~v~ 231 (371)
..+|||||||.|.....+.+.. . ..|++.|.||.+++..++...-.. .++...+.|+... +.+.+++|.|+
T Consensus 72 ~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~~~~~svD~it 149 (264)
T KOG2361|consen 72 AETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPSLKEPPEEGSVDIIT 149 (264)
T ss_pred hhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccchhccCCCCcCccceEE
Confidence 3489999999999999988865 3 689999999999999888654332 4666677777553 45679999999
Q ss_pred ccccccCcC--CHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHH--HhhccCCC-CCCCHHHHHHHH
Q 017428 232 SMESGEHMP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKK--ICDAYYLP-AWCSTADYVKLL 306 (371)
Q Consensus 232 ~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~ll 306 (371)
+..+|..++ ....++.+++++|||||.|++-+++..+.....-.- ...+.. ...+-+.. .+++.+++.+++
T Consensus 150 ~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~----~~~i~~nfYVRgDGT~~YfF~~eeL~~~f 225 (264)
T KOG2361|consen 150 LIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKK----GQCISENFYVRGDGTRAYFFTEEELDELF 225 (264)
T ss_pred EEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccC----CceeecceEEccCCceeeeccHHHHHHHH
Confidence 999999884 458999999999999999999987654432111000 000000 00111222 468999999999
Q ss_pred HhCCCceEEEE
Q 017428 307 QSLSLEDIKAE 317 (371)
Q Consensus 307 ~~aGF~~v~~~ 317 (371)
.++||..++..
T Consensus 226 ~~agf~~~~~~ 236 (264)
T KOG2361|consen 226 TKAGFEEVQLE 236 (264)
T ss_pred Hhcccchhccc
Confidence 99999977653
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.6e-12 Score=119.05 Aligned_cols=104 Identities=22% Similarity=0.339 Sum_probs=84.9
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccc--
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES-- 235 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~-- 235 (371)
+.+|||+|||+|.++..++... +.+|+|+|+|+.+++.|+++++..++.+++.++.+|+.+. +++++||+|+++--
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~-~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA-LPGRKYDLIVSNPPYV 200 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc-cCCCCccEEEECCCCC
Confidence 5789999999999999999886 6799999999999999999999998877899999998653 34568999998611
Q ss_pred ----ccCc-------C------------CHHHHHHHHHHhcCCCcEEEEEe
Q 017428 236 ----GEHM-------P------------DKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 236 ----l~~~-------~------------~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+.++ + ....+++++.++|+|||++++..
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~ 251 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEV 251 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 1111 0 12567899999999999998743
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.4e-13 Score=120.21 Aligned_cols=143 Identities=20% Similarity=0.268 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc
Q 017428 136 AAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVG 215 (371)
Q Consensus 136 ~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~ 215 (371)
.....+.-+.++.... ++.+|||+|||+|.+++..++.....|+|+|++|..++.|++++..++++..+.....
T Consensus 146 HpTT~lcL~~Le~~~~------~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~ 219 (300)
T COG2264 146 HPTTSLCLEALEKLLK------KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGF 219 (300)
T ss_pred ChhHHHHHHHHHHhhc------CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccc
Confidence 3344455555554443 3899999999999999999886334699999999999999999999998653333333
Q ss_pred CCCCCCCCCCccceEEccccccCcCCH-HHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCC
Q 017428 216 DALQQPFPDGQFDLVWSMESGEHMPDK-SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLP 294 (371)
Q Consensus 216 d~~~~~~~~~~fD~v~~~~~l~~~~~~-~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (371)
+....+ ..++||+|+++- +.++ ..+...+.+.|||||+++++-...
T Consensus 220 ~~~~~~-~~~~~DvIVANI----LA~vl~~La~~~~~~lkpgg~lIlSGIl~---------------------------- 266 (300)
T COG2264 220 LLLEVP-ENGPFDVIVANI----LAEVLVELAPDIKRLLKPGGRLILSGILE---------------------------- 266 (300)
T ss_pred cchhhc-ccCcccEEEehh----hHHHHHHHHHHHHHHcCCCceEEEEeehH----------------------------
Confidence 333332 346999999874 2333 578999999999999999975211
Q ss_pred CCCCHHHHHHHHHhCCCceEEEEec
Q 017428 295 AWCSTADYVKLLQSLSLEDIKAEDW 319 (371)
Q Consensus 295 ~~~~~~~~~~ll~~aGF~~v~~~~~ 319 (371)
...+.+.+.++++||.++++..-
T Consensus 267 --~q~~~V~~a~~~~gf~v~~~~~~ 289 (300)
T COG2264 267 --DQAESVAEAYEQAGFEVVEVLER 289 (300)
T ss_pred --hHHHHHHHHHHhCCCeEeEEEec
Confidence 02556888999999999887643
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.7e-13 Score=126.75 Aligned_cols=104 Identities=22% Similarity=0.258 Sum_probs=86.6
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCC--CCeEEEEcCCCCCCCCCCccceEEcccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLA--DKVSFQVGDALQQPFPDGQFDLVWSMES 235 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~~~~~~~fD~v~~~~~ 235 (371)
..+|||+|||+|.++..+++++ ..+|+++|+|+.+++.|+++++.++.. .++++...|+... ++.++||+|+++-.
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~~~~fDlIlsNPP 307 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VEPFRFNAVLCNPP 307 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CCCCCEEEEEECcC
Confidence 5699999999999999999987 679999999999999999999877643 3689999997653 34568999999866
Q ss_pred ccCc---CC--HHHHHHHHHHhcCCCcEEEEEe
Q 017428 236 GEHM---PD--KSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 236 l~~~---~~--~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+|.. .+ ..++++.++++|+|||.++++.
T Consensus 308 fh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 308 FHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred cccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 6543 22 3678999999999999999985
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.5e-12 Score=117.38 Aligned_cols=133 Identities=12% Similarity=0.084 Sum_probs=93.3
Q ss_pred CCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC---CCCCCccceEE
Q 017428 157 KRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ---PFPDGQFDLVW 231 (371)
Q Consensus 157 ~~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~~~fD~v~ 231 (371)
.++.+|||+|||+|.++..+++.. ...|+++|+++.+.+...+.++.. +|+.+++.|+... ....++||+|+
T Consensus 131 kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~~p~~y~~~~~~vDvV~ 207 (293)
T PTZ00146 131 KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDARYPQKYRMLVPMVDVIF 207 (293)
T ss_pred CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCccChhhhhcccCCCCEEE
Confidence 458999999999999999999987 358999999987664444443322 4789999998652 12346899998
Q ss_pred ccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHH----HHHHH
Q 017428 232 SMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADY----VKLLQ 307 (371)
Q Consensus 232 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ll~ 307 (371)
+... ...+...++.++.++|||||.++|.. -..... ...++++. .+.|+
T Consensus 208 ~Dva--~pdq~~il~~na~r~LKpGG~~vI~i-ka~~id------------------------~g~~pe~~f~~ev~~L~ 260 (293)
T PTZ00146 208 ADVA--QPDQARIVALNAQYFLKNGGHFIISI-KANCID------------------------STAKPEVVFASEVQKLK 260 (293)
T ss_pred EeCC--CcchHHHHHHHHHHhccCCCEEEEEE-eccccc------------------------cCCCHHHHHHHHHHHHH
Confidence 8763 22234466679999999999999942 111100 01122222 38899
Q ss_pred hCCCceEEEEec
Q 017428 308 SLSLEDIKAEDW 319 (371)
Q Consensus 308 ~aGF~~v~~~~~ 319 (371)
++||+.++....
T Consensus 261 ~~GF~~~e~v~L 272 (293)
T PTZ00146 261 KEGLKPKEQLTL 272 (293)
T ss_pred HcCCceEEEEec
Confidence 999998887664
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.4e-12 Score=121.38 Aligned_cols=125 Identities=20% Similarity=0.257 Sum_probs=96.9
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC-CCccceEEccccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP-DGQFDLVWSMESG 236 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~v~~~~~l 236 (371)
+.+|||+|||+|..+..++... +.+|+++|+|+.+++.|+++++..+. ++.++++|+.+..++ .++||+|+++--.
T Consensus 252 ~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gDl~e~~l~~~~~FDLIVSNPPY 329 (423)
T PRK14966 252 NGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA--RVEFAHGSWFDTDMPSEGKWDIIVSNPPY 329 (423)
T ss_pred CCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcchhccccccCCCccEEEECCCC
Confidence 5699999999999999998876 67999999999999999999988774 799999998764332 4679999996422
Q ss_pred cCc---------------------CC----HHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhcc
Q 017428 237 EHM---------------------PD----KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAY 291 (371)
Q Consensus 237 ~~~---------------------~~----~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (371)
..- .+ ..++++.+.+.|+|||++++.. .
T Consensus 330 I~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi-G-------------------------- 382 (423)
T PRK14966 330 IENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH-G-------------------------- 382 (423)
T ss_pred CCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE-C--------------------------
Confidence 100 11 2467778888999999987643 1
Q ss_pred CCCCCCCHHHHHHHHHhCCCceEEE
Q 017428 292 YLPAWCSTADYVKLLQSLSLEDIKA 316 (371)
Q Consensus 292 ~~~~~~~~~~~~~ll~~aGF~~v~~ 316 (371)
+...+.+.+++++.||..+++
T Consensus 383 ----~~Q~e~V~~ll~~~Gf~~v~v 403 (423)
T PRK14966 383 ----FDQGAAVRGVLAENGFSGVET 403 (423)
T ss_pred ----ccHHHHHHHHHHHCCCcEEEE
Confidence 124667889999999987665
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=3e-13 Score=118.22 Aligned_cols=96 Identities=21% Similarity=0.281 Sum_probs=77.6
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------CCCCcc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------FPDGQF 227 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~~f 227 (371)
++.+|||||||+|.++..+++.. ...|+|||+++ | ... +++.++++|+.+.+ +.+++|
T Consensus 51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~-~~v~~i~~D~~~~~~~~~i~~~~~~~~~ 118 (209)
T PRK11188 51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPI-VGVDFLQGDFRDELVLKALLERVGDSKV 118 (209)
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCC-CCcEEEecCCCChHHHHHHHHHhCCCCC
Confidence 47899999999999999999986 36899999998 2 122 46999999998853 567889
Q ss_pred ceEEccccccCcCCH-----------HHHHHHHHHhcCCCcEEEEEecc
Q 017428 228 DLVWSMESGEHMPDK-----------SKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 228 D~v~~~~~l~~~~~~-----------~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
|+|++..+.+...++ ..+++++.++|||||.+++..+.
T Consensus 119 D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~ 167 (209)
T PRK11188 119 QVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQ 167 (209)
T ss_pred CEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 999997766554332 46899999999999999997753
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.3e-13 Score=122.52 Aligned_cols=105 Identities=18% Similarity=0.205 Sum_probs=81.6
Q ss_pred CCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-CCCCC----ccceEE
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-PFPDG----QFDLVW 231 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~----~fD~v~ 231 (371)
+.+|||+|||+|..+..+++.+ +.+|+++|+|+.|++.+++++......-++.++++|+.+. +++.. ...+++
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~ 143 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFF 143 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEE
Confidence 6789999999999999999886 5799999999999999999887643223577789999763 33322 223444
Q ss_pred ccccccCcC--CHHHHHHHHHHhcCCCcEEEEEe
Q 017428 232 SMESGEHMP--DKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 232 ~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+..++++++ +...++++++++|+|||.+++..
T Consensus 144 ~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 144 PGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred ecccccCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 456777775 34679999999999999998743
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.9e-13 Score=108.38 Aligned_cols=105 Identities=30% Similarity=0.505 Sum_probs=88.5
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCccceEEccccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWSMESG 236 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~v~~~~~l 236 (371)
+.+|||+|||+|.++..+++....+++|+|+++..++.++.++...++..+++++++|+.+.. +++++||+|+++--.
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 358999999999999999988448999999999999999999999988788999999998764 678999999997655
Q ss_pred cCcC--------CHHHHHHHHHHhcCCCcEEEEEe
Q 017428 237 EHMP--------DKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 237 ~~~~--------~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
.... ....+++++.++|||||.+++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 5321 23688999999999999999875
|
... |
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.9e-12 Score=105.02 Aligned_cols=134 Identities=16% Similarity=0.108 Sum_probs=106.0
Q ss_pred HHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC
Q 017428 144 ETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF 222 (371)
Q Consensus 144 ~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 222 (371)
-.+.++.+.+ +.+++|||||||..++.++... ..+|+++|-+++.++..++++++.++ +|+.++.+|+.+.--
T Consensus 25 l~ls~L~~~~-----g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~-~n~~vv~g~Ap~~L~ 98 (187)
T COG2242 25 LTLSKLRPRP-----GDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV-DNLEVVEGDAPEALP 98 (187)
T ss_pred HHHHhhCCCC-----CCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC-CcEEEEeccchHhhc
Confidence 3455666554 8999999999999999999544 68999999999999999999999996 699999999876411
Q ss_pred CCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHH
Q 017428 223 PDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADY 302 (371)
Q Consensus 223 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (371)
...+||.|+.... .+.+.+++.+...|||||+|++.-... -+....
T Consensus 99 ~~~~~daiFIGGg----~~i~~ile~~~~~l~~ggrlV~naitl------------------------------E~~~~a 144 (187)
T COG2242 99 DLPSPDAIFIGGG----GNIEEILEAAWERLKPGGRLVANAITL------------------------------ETLAKA 144 (187)
T ss_pred CCCCCCEEEECCC----CCHHHHHHHHHHHcCcCCeEEEEeecH------------------------------HHHHHH
Confidence 1127999999876 466789999999999999999964211 134456
Q ss_pred HHHHHhCCC-ceEEEE
Q 017428 303 VKLLQSLSL-EDIKAE 317 (371)
Q Consensus 303 ~~ll~~aGF-~~v~~~ 317 (371)
.+.+++.|| +++++.
T Consensus 145 ~~~~~~~g~~ei~~v~ 160 (187)
T COG2242 145 LEALEQLGGREIVQVQ 160 (187)
T ss_pred HHHHHHcCCceEEEEE
Confidence 678899999 655553
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.5e-12 Score=114.48 Aligned_cols=111 Identities=16% Similarity=0.177 Sum_probs=88.7
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (371)
....++..+.+.+ +.+|||+|||+|..+..+++. ..+|+++|+++.+++.++++++..++ .++.+..+|..+.
T Consensus 66 ~~~~l~~~l~~~~-----~~~VLeiG~GsG~~t~~la~~-~~~v~~vd~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~ 138 (212)
T PRK00312 66 MVARMTELLELKP-----GDRVLEIGTGSGYQAAVLAHL-VRRVFSVERIKTLQWEAKRRLKQLGL-HNVSVRHGDGWKG 138 (212)
T ss_pred HHHHHHHhcCCCC-----CCEEEEECCCccHHHHHHHHH-hCEEEEEeCCHHHHHHHHHHHHHCCC-CceEEEECCcccC
Confidence 3445555555554 899999999999999888776 45899999999999999999998887 4699999998664
Q ss_pred CCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 221 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
..+.++||+|++...+.++ .+.+.+.|+|||.+++...
T Consensus 139 ~~~~~~fD~I~~~~~~~~~------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 139 WPAYAPFDRILVTAAAPEI------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CCcCCCcCEEEEccCchhh------hHHHHHhcCCCcEEEEEEc
Confidence 2234789999998766554 3567889999999998653
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.8e-12 Score=115.88 Aligned_cols=126 Identities=25% Similarity=0.395 Sum_probs=97.4
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l 236 (371)
++.+|||+|||+|.++..++... ..+|+|+|+|+.+++.|++++. .....++.++.+|+.+. ++.++||+|+++-..
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~~-~~~~~fD~Iv~npPy 185 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWFEP-LPGGRFDLIVSNPPY 185 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccccCc-CCCCceeEEEECCCc
Confidence 37899999999999999999987 5899999999999999999987 33346899999998653 335789999985321
Q ss_pred cC--------------------------cCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhc
Q 017428 237 EH--------------------------MPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDA 290 (371)
Q Consensus 237 ~~--------------------------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (371)
.. +.....+++++.++|+|||++++.. .
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~-g------------------------- 239 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI-G------------------------- 239 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE-C-------------------------
Confidence 10 0113568888999999999999842 0
Q ss_pred cCCCCCCCHHHHHHHHHhCCCceEEE
Q 017428 291 YYLPAWCSTADYVKLLQSLSLEDIKA 316 (371)
Q Consensus 291 ~~~~~~~~~~~~~~ll~~aGF~~v~~ 316 (371)
+...+.+.+++++.||..+++
T Consensus 240 -----~~~~~~~~~~l~~~gf~~v~~ 260 (275)
T PRK09328 240 -----YDQGEAVRALLAAAGFADVET 260 (275)
T ss_pred -----chHHHHHHHHHHhCCCceeEE
Confidence 113456888999999986665
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1e-12 Score=123.03 Aligned_cols=101 Identities=24% Similarity=0.306 Sum_probs=86.1
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
..+|||+|||+|.++..+++.. ..+|+++|+|+.+++.++++++.+++. .++...|+... ..++||+|+++-.+|
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~~--~~~~fDlIvsNPPFH 272 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFSD--IKGRFDMIISNPPFH 272 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEcccccc--cCCCccEEEECCCcc
Confidence 5689999999999999999986 569999999999999999999988763 56778887653 257899999998887
Q ss_pred Cc-----CCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 238 HM-----PDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 238 ~~-----~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
.. .....+++++.+.|||||.++++.
T Consensus 273 ~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 273 DGIQTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred CCccccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 53 234789999999999999999976
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.5e-12 Score=111.65 Aligned_cols=110 Identities=12% Similarity=0.050 Sum_probs=86.7
Q ss_pred HHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-CC
Q 017428 145 TLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-PF 222 (371)
Q Consensus 145 ~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~ 222 (371)
++..+...+ +.+|||+|||+|.++..+++.. +.+|+++|+++.+++.++++++..++ .+++++.+|+.+. +.
T Consensus 32 l~~~l~~~~-----~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~-~~v~~~~~d~~~~~~~ 105 (196)
T PRK07402 32 LISQLRLEP-----DSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV-KNVEVIEGSAPECLAQ 105 (196)
T ss_pred HHHhcCCCC-----CCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CCeEEEECchHHHHhh
Confidence 455555443 7899999999999999998765 57999999999999999999988887 4799999998652 21
Q ss_pred CCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 223 PDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 223 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
....+|.|+... ..+...+++++.++|+|||++++...
T Consensus 106 ~~~~~d~v~~~~----~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 106 LAPAPDRVCIEG----GRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred CCCCCCEEEEEC----CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 123467765432 24568899999999999999999763
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.2e-13 Score=115.18 Aligned_cols=127 Identities=17% Similarity=0.259 Sum_probs=85.7
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (371)
-++.++.++...+ +...|.|+|||.+.++..+.. +..|...|+-. .|-.+..+|+.+.
T Consensus 59 Pvd~iI~~l~~~~----~~~viaD~GCGdA~la~~~~~--~~~V~SfDLva----------------~n~~Vtacdia~v 116 (219)
T PF05148_consen 59 PVDVIIEWLKKRP----KSLVIADFGCGDAKLAKAVPN--KHKVHSFDLVA----------------PNPRVTACDIANV 116 (219)
T ss_dssp HHHHHHHHHCTS-----TTS-EEEES-TT-HHHHH--S-----EEEEESS-----------------SSTTEEES-TTS-
T ss_pred cHHHHHHHHHhcC----CCEEEEECCCchHHHHHhccc--CceEEEeeccC----------------CCCCEEEecCccC
Confidence 4556666655333 467999999999998866543 35799999965 2344688999999
Q ss_pred CCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHH
Q 017428 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTA 300 (371)
Q Consensus 221 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (371)
|+++++.|+++++.+|.. .|+..++.|+.|+|||||.|.|++... ++.+.+
T Consensus 117 PL~~~svDv~VfcLSLMG-Tn~~~fi~EA~RvLK~~G~L~IAEV~S----------------------------Rf~~~~ 167 (219)
T PF05148_consen 117 PLEDESVDVAVFCLSLMG-TNWPDFIREANRVLKPGGILKIAEVKS----------------------------RFENVK 167 (219)
T ss_dssp S--TT-EEEEEEES---S-S-HHHHHHHHHHHEEEEEEEEEEEEGG----------------------------G-S-HH
T ss_pred cCCCCceeEEEEEhhhhC-CCcHHHHHHHHheeccCcEEEEEEecc----------------------------cCcCHH
Confidence 999999999999988876 699999999999999999999998532 133678
Q ss_pred HHHHHHHhCCCceEEEEe
Q 017428 301 DYVKLLQSLSLEDIKAED 318 (371)
Q Consensus 301 ~~~~ll~~aGF~~v~~~~ 318 (371)
.+.+.++..||..+....
T Consensus 168 ~F~~~~~~~GF~~~~~d~ 185 (219)
T PF05148_consen 168 QFIKALKKLGFKLKSKDE 185 (219)
T ss_dssp HHHHHHHCTTEEEEEEE-
T ss_pred HHHHHHHHCCCeEEeccc
Confidence 899999999999887543
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2e-12 Score=113.61 Aligned_cols=130 Identities=22% Similarity=0.261 Sum_probs=105.7
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCccceEEcccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWSMES 235 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~v~~~~~ 235 (371)
..+|||+|||+|..++.++++. .++++|||+++++.+.|++.++.+++.++++++++|+.+.. ....+||+|+|+--
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPP 124 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNPP 124 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCCC
Confidence 7899999999999999999987 59999999999999999999999999999999999998863 34467999999643
Q ss_pred ccCc------------------CCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCC
Q 017428 236 GEHM------------------PDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWC 297 (371)
Q Consensus 236 l~~~------------------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (371)
++-. .+.+.+++.+.++|||||.+.++... .
T Consensus 125 yf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~-------------------------------e 173 (248)
T COG4123 125 YFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP-------------------------------E 173 (248)
T ss_pred CCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH-------------------------------H
Confidence 3322 13468999999999999999998621 1
Q ss_pred CHHHHHHHHHhCCCceEEEEec
Q 017428 298 STADYVKLLQSLSLEDIKAEDW 319 (371)
Q Consensus 298 ~~~~~~~ll~~aGF~~v~~~~~ 319 (371)
...++.++|.+.+|....+...
T Consensus 174 rl~ei~~~l~~~~~~~k~i~~V 195 (248)
T COG4123 174 RLAEIIELLKSYNLEPKRIQFV 195 (248)
T ss_pred HHHHHHHHHHhcCCCceEEEEe
Confidence 2345677788878876665443
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.3e-12 Score=122.42 Aligned_cols=104 Identities=20% Similarity=0.233 Sum_probs=88.8
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--CCCCCccceEEcccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--PFPDGQFDLVWSMES 235 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD~v~~~~~ 235 (371)
+..+||||||+|.++..+|... +..++|+|+++.+++.|.+++...++ .|+.++.+|+..+ .++++++|.|++...
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL-~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP 201 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNL-KNLLIINYDARLLLELLPSNSVEKIFVHFP 201 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHhhhhCCCCceeEEEEeCC
Confidence 5689999999999999999987 67999999999999999999998888 5799999998654 467899999997654
Q ss_pred ccCcCCH------HHHHHHHHHhcCCCcEEEEEe
Q 017428 236 GEHMPDK------SKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 236 l~~~~~~------~~~l~~~~~~LkpgG~l~i~~ 263 (371)
..+.... ..+++++.|+|+|||.+.+.+
T Consensus 202 dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 202 VPWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred CCccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 3332221 579999999999999999976
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=7e-12 Score=115.90 Aligned_cols=102 Identities=22% Similarity=0.345 Sum_probs=84.1
Q ss_pred CEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccc---
Q 017428 160 KNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES--- 235 (371)
Q Consensus 160 ~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~--- 235 (371)
.+|||+|||+|.++..++..+ +.+|+++|+|+.+++.|+++++..++.+++.++.+|+.+. ++.++||+|+++--
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~-l~~~~fDlIvsNPPyi~ 213 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA-LPGRRYDLIVSNPPYVD 213 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh-CCCCCccEEEECCCCCC
Confidence 689999999999999999887 6799999999999999999999988877899999998653 34568999998621
Q ss_pred ----------ccCcC------------CHHHHHHHHHHhcCCCcEEEEE
Q 017428 236 ----------GEHMP------------DKSKFVSELARVTAPAGTIIIV 262 (371)
Q Consensus 236 ----------l~~~~------------~~~~~l~~~~~~LkpgG~l~i~ 262 (371)
+.|-+ ....+++++.++|+|||.+++.
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 01111 1257889999999999999884
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.6e-12 Score=109.51 Aligned_cols=112 Identities=20% Similarity=0.315 Sum_probs=95.5
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 017428 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (371)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (371)
.+...++..+.+++ +.+|||||||+|+.+..+++..+ +|+.+|..+...+.|+++++..|+. ||.+.++|...
T Consensus 59 ~~vA~m~~~L~~~~-----g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~-nV~v~~gDG~~ 131 (209)
T COG2518 59 HMVARMLQLLELKP-----GDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYE-NVTVRHGDGSK 131 (209)
T ss_pred HHHHHHHHHhCCCC-----CCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCC-ceEEEECCccc
Confidence 36777788887775 99999999999999999999744 9999999999999999999999985 69999999876
Q ss_pred CCCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 220 QPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 220 ~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
-.-+..+||.|+.......++. .+.+-|||||++++-.-
T Consensus 132 G~~~~aPyD~I~Vtaaa~~vP~------~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 132 GWPEEAPYDRIIVTAAAPEVPE------ALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCCCCCCcCEEEEeeccCCCCH------HHHHhcccCCEEEEEEc
Confidence 4334589999999988877765 46678999999999663
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.42 E-value=2e-12 Score=117.76 Aligned_cols=142 Identities=21% Similarity=0.293 Sum_probs=103.5
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEE
Q 017428 133 DHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSF 212 (371)
Q Consensus 133 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~ 212 (371)
.......++.-+++..... ++.+|||+|||+|.+++..++....+|+|+|+++..++.|++++..+++..++.+
T Consensus 142 TG~H~TT~lcl~~l~~~~~------~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v 215 (295)
T PF06325_consen 142 TGHHPTTRLCLELLEKYVK------PGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEV 215 (295)
T ss_dssp SSHCHHHHHHHHHHHHHSS------TTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEE
T ss_pred CCCCHHHHHHHHHHHHhcc------CCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEE
Confidence 3455566666666666643 3789999999999999998886334799999999999999999999999876654
Q ss_pred EEcCCCCCCCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccC
Q 017428 213 QVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYY 292 (371)
Q Consensus 213 ~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (371)
. ...+ ...++||+|+++-... -...++..+.++|+|||+++++-...
T Consensus 216 ~--~~~~--~~~~~~dlvvANI~~~---vL~~l~~~~~~~l~~~G~lIlSGIl~-------------------------- 262 (295)
T PF06325_consen 216 S--LSED--LVEGKFDLVVANILAD---VLLELAPDIASLLKPGGYLILSGILE-------------------------- 262 (295)
T ss_dssp S--CTSC--TCCS-EEEEEEES-HH---HHHHHHHHCHHHEEEEEEEEEEEEEG--------------------------
T ss_pred E--Eecc--cccccCCEEEECCCHH---HHHHHHHHHHHhhCCCCEEEEccccH--------------------------
Confidence 3 2222 2358999999874332 23567888999999999999976321
Q ss_pred CCCCCCHHHHHHHHHhCCCceEEEEe
Q 017428 293 LPAWCSTADYVKLLQSLSLEDIKAED 318 (371)
Q Consensus 293 ~~~~~~~~~~~~ll~~aGF~~v~~~~ 318 (371)
...+++.+.+++ ||..++...
T Consensus 263 ----~~~~~v~~a~~~-g~~~~~~~~ 283 (295)
T PF06325_consen 263 ----EQEDEVIEAYKQ-GFELVEERE 283 (295)
T ss_dssp ----GGHHHHHHHHHT-TEEEEEEEE
T ss_pred ----HHHHHHHHHHHC-CCEEEEEEE
Confidence 135567788877 999887654
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.8e-12 Score=107.29 Aligned_cols=158 Identities=18% Similarity=0.183 Sum_probs=115.0
Q ss_pred EEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC--------CCccceEE
Q 017428 161 NVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP--------DGQFDLVW 231 (371)
Q Consensus 161 ~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--------~~~fD~v~ 231 (371)
+|||||||||..+.++++.+ .....-.|+++....-.+..+...++++-..-+..|+...+.+ .++||+|+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 69999999999999999998 6788899999999888888887777654344566777665322 45899999
Q ss_pred ccccccCcC--CHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhC
Q 017428 232 SMESGEHMP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSL 309 (371)
Q Consensus 232 ~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~a 309 (371)
+.+++|-.+ ..+.+++.+.++|+|||.|++......+.... ..-+......++.-...++ ..+.+++.++.+++
T Consensus 108 ~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~t-s~SN~~FD~sLr~rdp~~G---iRD~e~v~~lA~~~ 183 (204)
T PF06080_consen 108 CINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFT-SESNAAFDASLRSRDPEWG---IRDIEDVEALAAAH 183 (204)
T ss_pred ehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeC-CcHHHHHHHHHhcCCCCcC---ccCHHHHHHHHHHC
Confidence 999997764 34789999999999999999987433221110 0111122223333333444 45899999999999
Q ss_pred CCceEEEEecCCc
Q 017428 310 SLEDIKAEDWSQN 322 (371)
Q Consensus 310 GF~~v~~~~~~~~ 322 (371)
|++.++..+...+
T Consensus 184 GL~l~~~~~MPAN 196 (204)
T PF06080_consen 184 GLELEEDIDMPAN 196 (204)
T ss_pred CCccCcccccCCC
Confidence 9998887665543
|
The function of this family is unknown. |
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.8e-12 Score=110.21 Aligned_cols=111 Identities=21% Similarity=0.355 Sum_probs=98.2
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 017428 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (371)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (371)
..++..+++.+ +.+|||.|+|+|.++..|+... ..+|+.+|+.++..+.|+++++..++.+++.+...|+.+.
T Consensus 84 ~~I~~~~gi~p-----g~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~ 158 (256)
T COG2519 84 GYIVARLGISP-----GSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREG 158 (256)
T ss_pred HHHHHHcCCCC-----CCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccc
Confidence 45666777775 9999999999999999999866 3799999999999999999999999988899999999887
Q ss_pred CCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 221 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
.+++ .||+|+. -++++..+++++.+.|+|||.+++...
T Consensus 159 ~~~~-~vDav~L-----Dmp~PW~~le~~~~~Lkpgg~~~~y~P 196 (256)
T COG2519 159 IDEE-DVDAVFL-----DLPDPWNVLEHVSDALKPGGVVVVYSP 196 (256)
T ss_pred cccc-ccCEEEE-----cCCChHHHHHHHHHHhCCCcEEEEEcC
Confidence 6554 8999987 458999999999999999999999763
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.3e-11 Score=108.02 Aligned_cols=107 Identities=18% Similarity=0.230 Sum_probs=88.1
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH------H-----cCCCCCeEEEEcCCCCCCCC---C
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAA------A-----RGLADKVSFQVGDALQQPFP---D 224 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~------~-----~~~~~~v~~~~~d~~~~~~~---~ 224 (371)
+.+||+.|||.|.-+..|+++ |.+|+|+|+|+..++.+.+... . .--..++++.++|+.+++.. .
T Consensus 44 ~~rvLvPgCGkg~D~~~LA~~-G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~ 122 (226)
T PRK13256 44 SSVCLIPMCGCSIDMLFFLSK-GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNL 122 (226)
T ss_pred CCeEEEeCCCChHHHHHHHhC-CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccccc
Confidence 689999999999999999997 8899999999999998755210 0 00124799999999998532 3
Q ss_pred CccceEEccccccCcCC--HHHHHHHHHHhcCCCcEEEEEeccC
Q 017428 225 GQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVTWCH 266 (371)
Q Consensus 225 ~~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~ 266 (371)
+.||+|+-..++++++. ..+.++.+.++|+|||.+++..+..
T Consensus 123 ~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~ 166 (226)
T PRK13256 123 PVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEH 166 (226)
T ss_pred CCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEec
Confidence 68999999999999954 4789999999999999999987643
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.4e-13 Score=126.89 Aligned_cols=227 Identities=30% Similarity=0.401 Sum_probs=162.9
Q ss_pred HHHHHHHHHHHhcccchhhHhhhcccccccccCCCCCcCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcCh
Q 017428 92 ARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGG 171 (371)
Q Consensus 92 ~~~~~~~i~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~ 171 (371)
...+.+.+..+|+...++|...|+..+|.+.+-... ... ..-..+..+..+ ..... ++..++|+|||-|.
T Consensus 54 ~~~~~e~~~~~y~~~~dl~~~~w~~~~h~~~~~e~~-~~~--~~~~~~~~~~~l--~~~~~-----~~~~~~~~~~g~~~ 123 (364)
T KOG1269|consen 54 TEDLPEQIAKYYNNSTDLYERNWGQSFHFGRIPEGN-SNE--MFWIRHEGIVAL--RESCF-----PGSKVLDVGTGVGG 123 (364)
T ss_pred ccccchHHHHHhcccchhhhhhhccchhccCccchh-HHH--HHHHhhcchHHH--hhcCc-----ccccccccCcCcCc
Confidence 456667799999999999999999999987662221 110 011111111111 12222 36789999999999
Q ss_pred HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccCcCCHHHHHHHHHH
Q 017428 172 SSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELAR 251 (371)
Q Consensus 172 ~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~ 251 (371)
...+++...++.++|+|.++.++..+.......++..+..++..|+.+.|++++.||.+.+..+.+|.++...++++++|
T Consensus 124 ~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~~~~~~~~~y~Ei~r 203 (364)
T KOG1269|consen 124 PSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVCHAPDLEKVYAEIYR 203 (364)
T ss_pred hhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeecccCCcHHHHHHHHhc
Confidence 99999886578999999999999999999888888888888999999999999999999999999999999999999999
Q ss_pred hcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEEEecCCccc--CccHH
Q 017428 252 VTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVA--PFWPA 329 (371)
Q Consensus 252 ~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~~~~~--~~~~~ 329 (371)
+++|||..+..+++.......... ........+..+...+......++-++++..||..+..+....... +|+..
T Consensus 204 v~kpGG~~i~~e~i~~~~~~~~~~---~~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~~~~~~~~~~dl~~~~s~~w~~~ 280 (364)
T KOG1269|consen 204 VLKPGGLFIVKEWIKTAKLKKPNS---EHVDILLEIEGGDALPAETFNTDVFDLLKSFGFEHLKLEKDLALKSSFPWNTP 280 (364)
T ss_pred ccCCCceEEeHHHHHhhhccCCCc---ccccccCceeccccccceeccccHHHHHhhccchhhhhcccccCCCccccccc
Confidence 999999999998865433221111 1112222222222233233455677899999999888655544443 46554
Q ss_pred HH
Q 017428 330 VI 331 (371)
Q Consensus 330 ~~ 331 (371)
..
T Consensus 281 ~~ 282 (364)
T KOG1269|consen 281 LT 282 (364)
T ss_pred cc
Confidence 44
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.5e-12 Score=113.21 Aligned_cols=114 Identities=23% Similarity=0.341 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc
Q 017428 138 QVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRANALAAARGLADKVSFQVG 215 (371)
Q Consensus 138 ~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~ 215 (371)
+-.+...+++.+.+++ +.+|||||||+|..+..++...+ ..|+++|..+...+.|++++...++ .|+.++.+
T Consensus 57 ~P~~~a~~l~~L~l~p-----g~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~-~nv~~~~g 130 (209)
T PF01135_consen 57 APSMVARMLEALDLKP-----GDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI-DNVEVVVG 130 (209)
T ss_dssp -HHHHHHHHHHTTC-T-----T-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT-HSEEEEES
T ss_pred HHHHHHHHHHHHhcCC-----CCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc-CceeEEEc
Confidence 3446778888888776 99999999999999999998764 3699999999999999999999887 48999999
Q ss_pred CCCCCCCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 216 DALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 216 d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
|.....-..++||.|++......++ ..+.+.|++||+|++..
T Consensus 131 dg~~g~~~~apfD~I~v~~a~~~ip------~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 131 DGSEGWPEEAPFDRIIVTAAVPEIP------EALLEQLKPGGRLVAPI 172 (209)
T ss_dssp -GGGTTGGG-SEEEEEESSBBSS--------HHHHHTEEEEEEEEEEE
T ss_pred chhhccccCCCcCEEEEeeccchHH------HHHHHhcCCCcEEEEEE
Confidence 9866433457899999988776544 24677899999999965
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.2e-12 Score=112.57 Aligned_cols=124 Identities=18% Similarity=0.219 Sum_probs=95.7
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
..+|||+|||+|.++..++.+. +.+|+|+|+++.+++.+++++ +++.++.+|+.+.. ..++||+|+++-.++
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~e~~-~~~kFDlIIsNPPF~ 137 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFE-SNEKFDVVISNPPFG 137 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cCCEEEECchhhhc-ccCCCcEEEEcCCcc
Confidence 5789999999999999888875 579999999999999998753 36889999998865 347899999988887
Q ss_pred CcCC--------------------HHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCC
Q 017428 238 HMPD--------------------KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWC 297 (371)
Q Consensus 238 ~~~~--------------------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (371)
+... ..+++.....+|+|+|.++++-.+.+. ++ .-.
T Consensus 138 ~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~----------------------y~--~sl 193 (279)
T PHA03411 138 KINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPY----------------------YD--GTM 193 (279)
T ss_pred ccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEecccc----------------------cc--ccC
Confidence 7521 135667778899999987776211110 11 125
Q ss_pred CHHHHHHHHHhCCCce
Q 017428 298 STADYVKLLQSLSLED 313 (371)
Q Consensus 298 ~~~~~~~ll~~aGF~~ 313 (371)
++++++++|+++||..
T Consensus 194 ~~~~y~~~l~~~g~~~ 209 (279)
T PHA03411 194 KSNKYLKWSKQTGLVT 209 (279)
T ss_pred CHHHHHHHHHhcCcEe
Confidence 7999999999999983
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.7e-12 Score=112.63 Aligned_cols=145 Identities=24% Similarity=0.274 Sum_probs=102.6
Q ss_pred HHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC
Q 017428 144 ETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF 222 (371)
Q Consensus 144 ~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 222 (371)
.++....... ..+|||||+|+|.++..+++++ +.+++.+|+ |..++.+++ .++++++.+|+. .++
T Consensus 91 ~~~~~~d~~~-----~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f-~~~ 156 (241)
T PF00891_consen 91 ILLEAFDFSG-----FKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFF-DPL 156 (241)
T ss_dssp HHHHHSTTTT-----SSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-------TTTEEEEES-TT-TCC
T ss_pred hhhccccccC-----ccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-------ccccccccccHH-hhh
Confidence 3444544443 6789999999999999999999 789999999 888888887 379999999998 566
Q ss_pred CCCccceEEccccccCcCCH--HHHHHHHHHhcCCC--cEEEEEeccCCCCCcCccccC-hHHHHHHHHHhhccCCCCCC
Q 017428 223 PDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPA--GTIIIVTWCHRDLAPSEESLQ-PWEQELLKKICDAYYLPAWC 297 (371)
Q Consensus 223 ~~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~Lkpg--G~l~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 297 (371)
|. +|+|++.++||++++. ..+|+++++.|+|| |+|+|.+...+.......... .....+.--.... + .-+
T Consensus 157 P~--~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~-G--~~r 231 (241)
T PF00891_consen 157 PV--ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLTG-G--KER 231 (241)
T ss_dssp SS--ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHHS-S--S-E
T ss_pred cc--ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhcC-C--CCc
Confidence 65 9999999999999764 68999999999999 999999986554332221110 0011111111111 2 235
Q ss_pred CHHHHHHHHH
Q 017428 298 STADYVKLLQ 307 (371)
Q Consensus 298 ~~~~~~~ll~ 307 (371)
|.++|+++|+
T Consensus 232 t~~e~~~ll~ 241 (241)
T PF00891_consen 232 TEEEWEALLK 241 (241)
T ss_dssp EHHHHHHHHH
T ss_pred CHHHHHHHhC
Confidence 8999998874
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.7e-12 Score=122.83 Aligned_cols=126 Identities=13% Similarity=0.144 Sum_probs=96.8
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccc-
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG- 236 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l- 236 (371)
+.+|||+|||+|.+++.++..+ +++|+++|+|+.+++.|+++++..++.+++.++.+|+.+. ++.++||+|+++--.
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~-~~~~~fDlIvsNPPYi 217 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN-IEKQKFDFIVSNPPYI 217 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh-CcCCCccEEEECCCCC
Confidence 5689999999999999999876 6799999999999999999999888877899999997652 345689999984211
Q ss_pred -------------cCc--------C----CHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhcc
Q 017428 237 -------------EHM--------P----DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAY 291 (371)
Q Consensus 237 -------------~~~--------~----~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (371)
.|- . ....+++++.++|+|||.+++.. .
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi-g-------------------------- 270 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI-G-------------------------- 270 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE-C--------------------------
Confidence 110 1 12457788899999999998742 1
Q ss_pred CCCCCCCHHHHHHHHHhCCCceEEE
Q 017428 292 YLPAWCSTADYVKLLQSLSLEDIKA 316 (371)
Q Consensus 292 ~~~~~~~~~~~~~ll~~aGF~~v~~ 316 (371)
+...+.+.+++++.||..+.+
T Consensus 271 ----~~q~~~v~~~~~~~g~~~~~~ 291 (506)
T PRK01544 271 ----FKQEEAVTQIFLDHGYNIESV 291 (506)
T ss_pred ----CchHHHHHHHHHhcCCCceEE
Confidence 113556777888888876543
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.3e-12 Score=111.94 Aligned_cols=138 Identities=22% Similarity=0.333 Sum_probs=107.6
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (371)
-+..++..+.+.+ +.+|||.|+|+|.++..+++.. ..+|+..|+.++..+.|+++++..|++.++.+.+.|+.
T Consensus 28 D~~~I~~~l~i~p-----G~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~ 102 (247)
T PF08704_consen 28 DISYILMRLDIRP-----GSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVC 102 (247)
T ss_dssp HHHHHHHHTT--T-----T-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GG
T ss_pred hHHHHHHHcCCCC-----CCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEeccee
Confidence 3456777888876 9999999999999999999877 46999999999999999999999999999999999997
Q ss_pred CCCCC---CCccceEEccccccCcCCHHHHHHHHHHhc-CCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCC
Q 017428 219 QQPFP---DGQFDLVWSMESGEHMPDKSKFVSELARVT-APAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLP 294 (371)
Q Consensus 219 ~~~~~---~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L-kpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (371)
+..+. +..+|+|+. -++++..++..+.++| ||||++++...+..
T Consensus 103 ~~g~~~~~~~~~DavfL-----Dlp~Pw~~i~~~~~~L~~~gG~i~~fsP~ie--------------------------- 150 (247)
T PF08704_consen 103 EEGFDEELESDFDAVFL-----DLPDPWEAIPHAKRALKKPGGRICCFSPCIE--------------------------- 150 (247)
T ss_dssp CG--STT-TTSEEEEEE-----ESSSGGGGHHHHHHHE-EEEEEEEEEESSHH---------------------------
T ss_pred cccccccccCcccEEEE-----eCCCHHHHHHHHHHHHhcCCceEEEECCCHH---------------------------
Confidence 65442 367999987 4589999999999999 89999999764311
Q ss_pred CCCCHHHHHHHHHhCCCceEEEEe
Q 017428 295 AWCSTADYVKLLQSLSLEDIKAED 318 (371)
Q Consensus 295 ~~~~~~~~~~ll~~aGF~~v~~~~ 318 (371)
-.....+.|++.||..+++.+
T Consensus 151 ---Qv~~~~~~L~~~gf~~i~~~E 171 (247)
T PF08704_consen 151 ---QVQKTVEALREHGFTDIETVE 171 (247)
T ss_dssp ---HHHHHHHHHHHTTEEEEEEEE
T ss_pred ---HHHHHHHHHHHCCCeeeEEEE
Confidence 123345678889999887644
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.5e-12 Score=117.23 Aligned_cols=111 Identities=14% Similarity=0.261 Sum_probs=89.3
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (371)
+...++..+.+++ +.+|||+|||+|.++..+++..+ ..|+++|+++.+++.|+++++..++ .++.++.+|+.
T Consensus 68 l~a~ll~~L~i~~-----g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~gD~~ 141 (322)
T PRK13943 68 LMALFMEWVGLDK-----GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCGDGY 141 (322)
T ss_pred HHHHHHHhcCCCC-----CCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCChh
Confidence 4556666666554 78999999999999999998763 4799999999999999999998887 57999999987
Q ss_pred CCCCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 219 QQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 219 ~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
......++||+|++...+.++ ...+.+.|+|||.+++..
T Consensus 142 ~~~~~~~~fD~Ii~~~g~~~i------p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 142 YGVPEFAPYDVIFVTVGVDEV------PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred hcccccCCccEEEECCchHHh------HHHHHHhcCCCCEEEEEe
Confidence 654445789999987655443 235678999999988853
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.1e-12 Score=106.72 Aligned_cols=118 Identities=22% Similarity=0.331 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc
Q 017428 136 AAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVG 215 (371)
Q Consensus 136 ~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~ 215 (371)
..+..+.++.++.+.++. ..+.-|||||||+|..+..+.+. |...+|+|+|+.|++.|.++--. -.++.+
T Consensus 31 ~IQ~em~eRaLELLalp~---~~~~~iLDIGCGsGLSg~vL~~~-Gh~wiGvDiSpsML~~a~~~e~e------gdlil~ 100 (270)
T KOG1541|consen 31 LIQAEMAERALELLALPG---PKSGLILDIGCGSGLSGSVLSDS-GHQWIGVDISPSMLEQAVERELE------GDLILC 100 (270)
T ss_pred eehHHHHHHHHHHhhCCC---CCCcEEEEeccCCCcchheeccC-CceEEeecCCHHHHHHHHHhhhh------cCeeee
Confidence 445667777777777654 24678999999999999998876 78999999999999999874322 236777
Q ss_pred CCC-CCCCCCCccceEEccccccCc-------CCH----HHHHHHHHHhcCCCcEEEEEe
Q 017428 216 DAL-QQPFPDGQFDLVWSMESGEHM-------PDK----SKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 216 d~~-~~~~~~~~fD~v~~~~~l~~~-------~~~----~~~l~~~~~~LkpgG~l~i~~ 263 (371)
|+- -+||..++||.+|+..++.++ .++ ..++..++.+|++|++.++.-
T Consensus 101 DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Qf 160 (270)
T KOG1541|consen 101 DMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQF 160 (270)
T ss_pred ecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEe
Confidence 775 468999999999987766554 222 357888999999999998864
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.2e-11 Score=106.74 Aligned_cols=152 Identities=22% Similarity=0.301 Sum_probs=107.1
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHH-cC----------CCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAA-RG----------LADK 209 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~-~~----------~~~~ 209 (371)
.+.+++..+..++ +.+||..|||.|.-+..|+++ |.+|+|+|+|+..++.+.+.... .. -..+
T Consensus 25 ~L~~~~~~l~~~~-----~~rvLvPgCG~g~D~~~La~~-G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~ 98 (218)
T PF05724_consen 25 ALVEYLDSLALKP-----GGRVLVPGCGKGYDMLWLAEQ-GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGR 98 (218)
T ss_dssp HHHHHHHHHTTST-----SEEEEETTTTTSCHHHHHHHT-TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSS
T ss_pred HHHHHHHhcCCCC-----CCeEEEeCCCChHHHHHHHHC-CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCc
Confidence 3344444444443 789999999999999999997 88999999999999988443211 00 1236
Q ss_pred eEEEEcCCCCCCCC-CCccceEEccccccCcC--CHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHH
Q 017428 210 VSFQVGDALQQPFP-DGQFDLVWSMESGEHMP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKK 286 (371)
Q Consensus 210 v~~~~~d~~~~~~~-~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (371)
|++.++|+.+++.. .++||+|+=..+++.++ .+.+..+.+.++|+|||.+++....++....
T Consensus 99 i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~--------------- 163 (218)
T PF05724_consen 99 ITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEM--------------- 163 (218)
T ss_dssp EEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCS---------------
T ss_pred eEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCC---------------
Confidence 88999999997533 25799999999998884 4689999999999999996555543332110
Q ss_pred HhhccCCCCCCCHHHHHHHHHhCCCceEEEEe
Q 017428 287 ICDAYYLPAWCSTADYVKLLQSLSLEDIKAED 318 (371)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~ 318 (371)
.+.|...+.+++.+++. .+|++...+.
T Consensus 164 ----~GPPf~v~~~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 164 ----EGPPFSVTEEEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp ----SSSS----HHHHHHHHT-TTEEEEEEEE
T ss_pred ----CCcCCCCCHHHHHHHhc-CCcEEEEEec
Confidence 12222357889999998 8999888776
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.3e-12 Score=109.61 Aligned_cols=99 Identities=18% Similarity=0.213 Sum_probs=73.4
Q ss_pred EEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccCcC
Q 017428 161 NVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMP 240 (371)
Q Consensus 161 ~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 240 (371)
.++|+|||+|..++.+++.+ .+|+|+|+|+.|++.|++.....-......+...++.++--.+++.|+|++..++|++
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~-k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWF- 113 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHY-KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWF- 113 (261)
T ss_pred eEEEeccCCCcchHHHHHhh-hhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhh-
Confidence 79999999998888888874 5899999999999998875322211111222233333332237999999999999876
Q ss_pred CHHHHHHHHHHhcCCCcEEEE
Q 017428 241 DKSKFVSELARVTAPAGTIII 261 (371)
Q Consensus 241 ~~~~~l~~~~~~LkpgG~l~i 261 (371)
|.++++++++|+||+.|-++.
T Consensus 114 dle~fy~~~~rvLRk~Gg~ia 134 (261)
T KOG3010|consen 114 DLERFYKEAYRVLRKDGGLIA 134 (261)
T ss_pred chHHHHHHHHHHcCCCCCEEE
Confidence 778999999999998885444
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.6e-11 Score=107.83 Aligned_cols=122 Identities=22% Similarity=0.310 Sum_probs=94.7
Q ss_pred EEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccc--c
Q 017428 161 NVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG--E 237 (371)
Q Consensus 161 ~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l--~ 237 (371)
+|||+|||+|..++.++... .+.|+|+|+|+..++.|++++..+++ .++.++..|+.+. .. ++||+|+++--. .
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~~-~~-~~fDlIVsNPPYip~ 189 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFEP-LR-GKFDLIVSNPPYIPA 189 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeecccc-cC-CceeEEEeCCCCCCC
Confidence 79999999999999999987 46999999999999999999999998 6777777776653 22 489999985211 1
Q ss_pred C---c----------------C----CHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCC
Q 017428 238 H---M----------------P----DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLP 294 (371)
Q Consensus 238 ~---~----------------~----~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (371)
. . . -..+++.++.+.|+|||++++-.-
T Consensus 190 ~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g------------------------------ 239 (280)
T COG2890 190 EDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG------------------------------ 239 (280)
T ss_pred cccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC------------------------------
Confidence 1 0 0 124788889999999888888541
Q ss_pred CCCCHHHHHHHHHhCC-CceEEE
Q 017428 295 AWCSTADYVKLLQSLS-LEDIKA 316 (371)
Q Consensus 295 ~~~~~~~~~~ll~~aG-F~~v~~ 316 (371)
+...+.+.+++.+.| |..+..
T Consensus 240 -~~q~~~v~~~~~~~~~~~~v~~ 261 (280)
T COG2890 240 -LTQGEAVKALFEDTGFFEIVET 261 (280)
T ss_pred -CCcHHHHHHHHHhcCCceEEEE
Confidence 234677889999999 665544
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.2e-11 Score=106.21 Aligned_cols=101 Identities=24% Similarity=0.351 Sum_probs=78.7
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C-CCCCccceEEcccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P-FPDGQFDLVWSMES 235 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~~~~~fD~v~~~~~ 235 (371)
+.+|||+|||+|.++..+++.. +.+|+++|+|+.+++.|+++++.++ ++++.+|+.+. + ...++||+|+++--
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~~l~~~~~~~fDlVv~NPP 162 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYDALPTALRGRVDILAANAP 162 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechhhcchhcCCCEeEEEECCC
Confidence 4689999999999999999876 5799999999999999999987755 47888998653 2 11357999998642
Q ss_pred ccC------c----------------CC----HHHHHHHHHHhcCCCcEEEEEe
Q 017428 236 GEH------M----------------PD----KSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 236 l~~------~----------------~~----~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
... + .+ ...+++.+.++|+|||++++..
T Consensus 163 y~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~ 216 (251)
T TIGR03704 163 YVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVET 216 (251)
T ss_pred CCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 210 0 01 2477888889999999999864
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.3e-11 Score=111.57 Aligned_cols=107 Identities=11% Similarity=0.245 Sum_probs=84.6
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-CCCCCccceEEccccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-PFPDGQFDLVWSMESG 236 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~v~~~~~l 236 (371)
+.+|||||||+|.++..+++.+ +.+|+++|+++.+++.|++.+...+..++++++.+|+.+. .-..++||+|++...-
T Consensus 67 ~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~~~ 146 (262)
T PRK04457 67 PQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDGFD 146 (262)
T ss_pred CCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeCCC
Confidence 6799999999999999999887 6799999999999999999876554446899999998653 2123689999975211
Q ss_pred -cCcC---CHHHHHHHHHHhcCCCcEEEEEecc
Q 017428 237 -EHMP---DKSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 237 -~~~~---~~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
...+ ....+++++.+.|+|||++++..+.
T Consensus 147 ~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~ 179 (262)
T PRK04457 147 GEGIIDALCTQPFFDDCRNALSSDGIFVVNLWS 179 (262)
T ss_pred CCCCccccCcHHHHHHHHHhcCCCcEEEEEcCC
Confidence 1111 1268999999999999999996543
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.3e-11 Score=105.70 Aligned_cols=144 Identities=16% Similarity=0.207 Sum_probs=98.4
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
...+.||.|+|-|..+..+.-.+-.+|..||+.+..++.|++.+.... +.-.++++..+.+...+.++||+|++-+++.
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~-~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDN-PRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGG-CCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccC-CCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 467999999999999998765544689999999999999998764421 1236788888887643457999999999999
Q ss_pred CcCCH--HHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEE
Q 017428 238 HMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIK 315 (371)
Q Consensus 238 ~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~ 315 (371)
|++|. ..+|+++...|+|||.+++-+-...... ..+. .-..+-..+.+.+.+++++||++++.
T Consensus 134 hLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~---~~~D------------~~DsSvTRs~~~~~~lF~~AGl~~v~ 198 (218)
T PF05891_consen 134 HLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGF---DEFD------------EEDSSVTRSDEHFRELFKQAGLRLVK 198 (218)
T ss_dssp GS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSE---EEEE------------TTTTEEEEEHHHHHHHHHHCT-EEEE
T ss_pred cCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCC---cccC------------CccCeeecCHHHHHHHHHHcCCEEEE
Confidence 99764 7899999999999999999774322110 0010 00001124788999999999999998
Q ss_pred EE
Q 017428 316 AE 317 (371)
Q Consensus 316 ~~ 317 (371)
.+
T Consensus 199 ~~ 200 (218)
T PF05891_consen 199 EE 200 (218)
T ss_dssp EE
T ss_pred ec
Confidence 65
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.31 E-value=2e-11 Score=93.44 Aligned_cols=101 Identities=37% Similarity=0.578 Sum_probs=85.0
Q ss_pred EEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC-CCCccceEEccccccC-
Q 017428 161 NVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF-PDGQFDLVWSMESGEH- 238 (371)
Q Consensus 161 ~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~v~~~~~l~~- 238 (371)
+|+|+|||+|..+..+++....+++++|+++.++..+++..... ...++.+...|+.+... ..++||+|++..++++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAAL-LADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcc-cccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 48999999999999998833679999999999999988543333 33579999999988653 4578999999999988
Q ss_pred cCCHHHHHHHHHHhcCCCcEEEEE
Q 017428 239 MPDKSKFVSELARVTAPAGTIIIV 262 (371)
Q Consensus 239 ~~~~~~~l~~~~~~LkpgG~l~i~ 262 (371)
......+++.+.+.|+|||.+++.
T Consensus 80 ~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 677889999999999999999875
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1e-11 Score=107.30 Aligned_cols=124 Identities=17% Similarity=0.234 Sum_probs=97.8
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (371)
-++.+++.+...+ ....|.|+|||-+.++. .-...|+.+|+.+ .|-+++.+|+.+.
T Consensus 167 Pld~ii~~ik~r~----~~~vIaD~GCGEakiA~----~~~~kV~SfDL~a----------------~~~~V~~cDm~~v 222 (325)
T KOG3045|consen 167 PLDVIIRKIKRRP----KNIVIADFGCGEAKIAS----SERHKVHSFDLVA----------------VNERVIACDMRNV 222 (325)
T ss_pred hHHHHHHHHHhCc----CceEEEecccchhhhhh----ccccceeeeeeec----------------CCCceeeccccCC
Confidence 3455555554443 46789999999997765 2245799999954 4567789999999
Q ss_pred CCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHH
Q 017428 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTA 300 (371)
Q Consensus 221 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (371)
|+++++.|+++++.+|.. .|+..++.+++|+|+|||.++|.+... .|-+..
T Consensus 223 Pl~d~svDvaV~CLSLMg-tn~~df~kEa~RiLk~gG~l~IAEv~S----------------------------Rf~dv~ 273 (325)
T KOG3045|consen 223 PLEDESVDVAVFCLSLMG-TNLADFIKEANRILKPGGLLYIAEVKS----------------------------RFSDVK 273 (325)
T ss_pred cCccCcccEEEeeHhhhc-ccHHHHHHHHHHHhccCceEEEEehhh----------------------------hcccHH
Confidence 999999999999888765 789999999999999999999998421 244667
Q ss_pred HHHHHHHhCCCceEEEE
Q 017428 301 DYVKLLQSLSLEDIKAE 317 (371)
Q Consensus 301 ~~~~ll~~aGF~~v~~~ 317 (371)
.+.+.|...||.+....
T Consensus 274 ~f~r~l~~lGF~~~~~d 290 (325)
T KOG3045|consen 274 GFVRALTKLGFDVKHKD 290 (325)
T ss_pred HHHHHHHHcCCeeeehh
Confidence 78899999999977654
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.3e-10 Score=112.74 Aligned_cols=106 Identities=21% Similarity=0.304 Sum_probs=85.3
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCccceEEccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWSME 234 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~v~~~~ 234 (371)
++.+|||+|||+|..+..+++.. +..|+++|+++.+++.++++++..|+ ++.++.+|+.+.+ +..++||.|++.-
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~--~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 321 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL--KATVIVGDARDPAQWWDGQPFDRILLDA 321 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC--CeEEEEcCcccchhhcccCCCCEEEECC
Confidence 48899999999999999999986 46999999999999999999998886 4789999998753 3457899999532
Q ss_pred c------ccCcC------C----------HHHHHHHHHHhcCCCcEEEEEecc
Q 017428 235 S------GEHMP------D----------KSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 235 ~------l~~~~------~----------~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
. +.+-+ . ...++..+.++|||||.+++.+.+
T Consensus 322 Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs 374 (427)
T PRK10901 322 PCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCS 374 (427)
T ss_pred CCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 1 11111 1 136899999999999999998753
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.1e-11 Score=115.59 Aligned_cols=109 Identities=17% Similarity=0.221 Sum_probs=87.0
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC--CCCccceEEcc-
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF--PDGQFDLVWSM- 233 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~fD~v~~~- 233 (371)
++.+|||+|||+|..+..+++.. ..+|+++|+++.+++.++++++..|+...+.+..+|....+. +.++||.|++.
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllDa 317 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLDA 317 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEcC
Confidence 48899999999999999999876 479999999999999999999998875334446677655443 46789999852
Q ss_pred -----ccccCcCC----------------HHHHHHHHHHhcCCCcEEEEEeccC
Q 017428 234 -----ESGEHMPD----------------KSKFVSELARVTAPAGTIIIVTWCH 266 (371)
Q Consensus 234 -----~~l~~~~~----------------~~~~l~~~~~~LkpgG~l~i~~~~~ 266 (371)
+++.+.++ ...++.++.++|||||.|++++.+.
T Consensus 318 PcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 318 PCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred CCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 34444443 2579999999999999999988654
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.3e-12 Score=105.96 Aligned_cols=154 Identities=19% Similarity=0.159 Sum_probs=114.7
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 238 (371)
...++|||||-|.....+....-.+++-+|.|-.|++.++..- ..++ .+...++|-+.++|.++++|+|++...+|+
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~q-dp~i--~~~~~v~DEE~Ldf~ens~DLiisSlslHW 149 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQ-DPSI--ETSYFVGDEEFLDFKENSVDLIISSLSLHW 149 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccC-CCce--EEEEEecchhcccccccchhhhhhhhhhhh
Confidence 4579999999999999988765457999999999999887531 1222 367788998889999999999999999999
Q ss_pred cCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEEE
Q 017428 239 MPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAE 317 (371)
Q Consensus 239 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~ 317 (371)
+.|.+..+.++...|||+|.++..-+..+.......+++- ...-+..+...++.++....++..+|.+|||....+.
T Consensus 150 ~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqL--AelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~tvD 226 (325)
T KOG2940|consen 150 TNDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQL--AELEREGGISPHISPFTQVRDIGNLLTRAGFSMLTVD 226 (325)
T ss_pred hccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhH--HHHHhccCCCCCcChhhhhhhhhhHHhhcCcccceec
Confidence 9999999999999999999999877665554432222211 1111111122233345567789999999999976554
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.9e-11 Score=105.63 Aligned_cols=103 Identities=20% Similarity=0.284 Sum_probs=86.4
Q ss_pred CCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C-----CCCCccceE
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P-----FPDGQFDLV 230 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-----~~~~~fD~v 230 (371)
+.+|||+|||+|..+..++... +.+|+++|+++++++.|+++++..++.++++++.+|+.+. + .+.++||+|
T Consensus 69 ~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~V 148 (234)
T PLN02781 69 AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFA 148 (234)
T ss_pred CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEE
Confidence 7899999999999999998865 4699999999999999999999999988999999998763 1 124689999
Q ss_pred EccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
++... -+....++..+.++|+|||.+++-+.
T Consensus 149 fiDa~---k~~y~~~~~~~~~ll~~GG~ii~dn~ 179 (234)
T PLN02781 149 FVDAD---KPNYVHFHEQLLKLVKVGGIIAFDNT 179 (234)
T ss_pred EECCC---HHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 87532 13456789999999999999887553
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.5e-11 Score=106.24 Aligned_cols=103 Identities=26% Similarity=0.322 Sum_probs=86.8
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
+.+|||+|||.|.+++.+++.. ..+++-+|.+...++.|++++..+++. +..+...|..+.. . ++||+|+++--+|
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~-~~~v~~s~~~~~v-~-~kfd~IisNPPfh 235 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVE-NTEVWASNLYEPV-E-GKFDLIISNPPFH 235 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCC-ccEEEEecccccc-c-ccccEEEeCCCcc
Confidence 5699999999999999999988 689999999999999999999998874 4466777765543 3 3999999998887
Q ss_pred CcCCH-----HHHHHHHHHhcCCCcEEEEEec
Q 017428 238 HMPDK-----SKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 238 ~~~~~-----~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
.=.+. .+++..+.+.|++||.|.|+--
T Consensus 236 ~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 236 AGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred CCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 54332 4899999999999999999863
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.3e-11 Score=115.68 Aligned_cols=107 Identities=19% Similarity=0.264 Sum_probs=88.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----CCCCccceEE
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----FPDGQFDLVW 231 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~v~ 231 (371)
++.+|||+|||+|..+..+++.. ..+|+++|+++.+++.++++++..|+. ++.++..|+.+.+ +..++||.|+
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~~~fD~Vl 330 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK-SIKILAADSRNLLELKPQWRGYFDRIL 330 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC-eEEEEeCChhhcccccccccccCCEEE
Confidence 48899999999999999999876 358999999999999999999999984 6999999998765 3457899999
Q ss_pred cc------ccccCcCC----------------HHHHHHHHHHhcCCCcEEEEEecc
Q 017428 232 SM------ESGEHMPD----------------KSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 232 ~~------~~l~~~~~----------------~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
+. .++.+-++ ...++.++.++|||||.|+.++.+
T Consensus 331 ~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcs 386 (434)
T PRK14901 331 LDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCT 386 (434)
T ss_pred EeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 63 23333333 257899999999999999988754
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.5e-10 Score=102.57 Aligned_cols=170 Identities=23% Similarity=0.298 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-C--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeE
Q 017428 135 RAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-G--AKCQGITLSPVQAQRANALAAARGLADKVS 211 (371)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~-~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~ 211 (371)
.......+...+..+.-.. .+.+||||+||.|.......+.. . ..|...|+|+..++..++.++..|+.+-++
T Consensus 116 k~~l~~~i~~ai~~L~~~g----~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~ 191 (311)
T PF12147_consen 116 KVHLEELIRQAIARLREQG----RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIAR 191 (311)
T ss_pred HHHHHHHHHHHHHHHHhcC----CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceE
Confidence 3344444555554443222 47899999999999988888877 2 689999999999999999999999976669
Q ss_pred EEEcCCCCCC-C--CCCccceEEccccccCcCCH---HHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHH
Q 017428 212 FQVGDALQQP-F--PDGQFDLVWSMESGEHMPDK---SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLK 285 (371)
Q Consensus 212 ~~~~d~~~~~-~--~~~~fD~v~~~~~l~~~~~~---~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~ 285 (371)
|.++|+.+.. + -+-..++++.+..++.++|. ...+.-+.+.+.|||+|+.+.-.... . + +.....+.
T Consensus 192 f~~~dAfd~~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHP---Q---l-e~IAr~Lt 264 (311)
T PF12147_consen 192 FEQGDAFDRDSLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHP---Q---L-EMIARVLT 264 (311)
T ss_pred EEecCCCCHhHhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCc---c---h-HHHHHHHh
Confidence 9999998742 1 13457999999999999884 46788999999999999997622111 1 1 11122222
Q ss_pred HH--hhccCCCCCCCHHHHHHHHHhCCCceEEE
Q 017428 286 KI--CDAYYLPAWCSTADYVKLLQSLSLEDIKA 316 (371)
Q Consensus 286 ~~--~~~~~~~~~~~~~~~~~ll~~aGF~~v~~ 316 (371)
.. ...|-. ...+..++.++.+.+||.-++.
T Consensus 265 sHr~g~~WvM-RrRsq~EmD~Lv~~aGF~K~~q 296 (311)
T PF12147_consen 265 SHRDGKAWVM-RRRSQAEMDQLVEAAGFEKIDQ 296 (311)
T ss_pred cccCCCceEE-EecCHHHHHHHHHHcCCchhhh
Confidence 11 112222 2479999999999999985543
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.2e-10 Score=113.64 Aligned_cols=106 Identities=19% Similarity=0.322 Sum_probs=86.3
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcc--
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSM-- 233 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~-- 233 (371)
++.+|||+|||+|..+..+++.. +.+|+++|+|+.+++.++++++..|+ .++.++.+|+...+ ++++||+|++.
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~-~~v~~~~~Da~~~~-~~~~fD~Vl~D~P 327 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI-TIIETIEGDARSFS-PEEQPDAILLDAP 327 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC-CeEEEEeCcccccc-cCCCCCEEEEcCC
Confidence 47899999999999999998865 46899999999999999999999988 47999999998765 45789999952
Q ss_pred -ccccCc---CC----------------HHHHHHHHHHhcCCCcEEEEEecc
Q 017428 234 -ESGEHM---PD----------------KSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 234 -~~l~~~---~~----------------~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
....++ ++ ...++.++.++|||||++++.+.+
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs 379 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCS 379 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 111111 11 136899999999999999998754
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.1e-10 Score=102.37 Aligned_cols=95 Identities=22% Similarity=0.355 Sum_probs=77.1
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
...++||||+|.|..+..++..+ .+|++.+.|+.|....++ .|. + +.|..+..-.+.+||+|.|.++|-
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f-~~v~aTE~S~~Mr~rL~~----kg~----~--vl~~~~w~~~~~~fDvIscLNvLD 162 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF-KEVYATEASPPMRWRLSK----KGF----T--VLDIDDWQQTDFKFDVISCLNVLD 162 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc-ceEEeecCCHHHHHHHHh----CCC----e--EEehhhhhccCCceEEEeehhhhh
Confidence 46789999999999999999876 479999999999655443 442 2 233333333356899999999999
Q ss_pred CcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 238 HMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 238 ~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
.-.+|..+++.+++.|+|+|+++++-
T Consensus 163 Rc~~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 163 RCDRPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred ccCCHHHHHHHHHHHhCCCCEEEEEE
Confidence 98999999999999999999999965
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.2e-10 Score=112.85 Aligned_cols=107 Identities=19% Similarity=0.254 Sum_probs=87.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-CCCCccceEEccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-FPDGQFDLVWSME 234 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~v~~~~ 234 (371)
++.+|||+|||+|..+..+++.. +.+|+++|+++.+++.++++++..|+. ++.+.+.|+..++ +..++||.|++.-
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-~v~~~~~Da~~l~~~~~~~fD~Vl~Da 315 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-SIEIKIADAERLTEYVQDTFDRILVDA 315 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhhhhhhhhccCCEEEECC
Confidence 48899999999999999999876 579999999999999999999999984 6999999998765 4467899998632
Q ss_pred ---cccCc---CC----------------HHHHHHHHHHhcCCCcEEEEEecc
Q 017428 235 ---SGEHM---PD----------------KSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 235 ---~l~~~---~~----------------~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
.+..+ ++ ..+++.++.+.|||||.|+.++.+
T Consensus 316 PCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 316 PCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT 368 (431)
T ss_pred CCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 22222 11 146799999999999999998765
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.1e-10 Score=106.07 Aligned_cols=107 Identities=15% Similarity=0.162 Sum_probs=86.1
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccc-
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSME- 234 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~- 234 (371)
++.+|||+|||+|..+..+++.. ...|+++|+++.+++.++++++..++ .++.+...|+...+...+.||+|++.-
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~-~~v~~~~~D~~~~~~~~~~fD~Vl~D~P 149 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV-LNVAVTNFDGRVFGAAVPKFDAILLDAP 149 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC-CcEEEecCCHHHhhhhccCCCEEEEcCC
Confidence 48899999999999999998876 35899999999999999999999988 479999999877654456799998632
Q ss_pred -----cccCcCC----------------HHHHHHHHHHhcCCCcEEEEEecc
Q 017428 235 -----SGEHMPD----------------KSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 235 -----~l~~~~~----------------~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
++.+-++ ...+++++.++|||||+|+..+.+
T Consensus 150 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs 201 (264)
T TIGR00446 150 CSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCS 201 (264)
T ss_pred CCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 1111111 135899999999999999887643
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.1e-10 Score=98.89 Aligned_cols=94 Identities=21% Similarity=0.360 Sum_probs=72.9
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------CCCCcc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------FPDGQF 227 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~~f 227 (371)
++.+|||+|||+|.++..+++.+ ..+|+++|+++.+ .. +++.++..|+.+.+ ++.++|
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~-~~i~~~~~d~~~~~~~~~l~~~~~~~~~ 99 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI-ENVDFIRGDFTDEEVLNKIRERVGDDKV 99 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC-CCceEEEeeCCChhHHHHHHHHhCCCCc
Confidence 48899999999999999998876 3579999999864 12 46888999987642 346789
Q ss_pred ceEEcccccc--------Cc---CCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 228 DLVWSMESGE--------HM---PDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 228 D~v~~~~~l~--------~~---~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
|+|++....+ |. .+...++.++.++|+|||.+++..
T Consensus 100 D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 100 DVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred cEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 9999864321 11 113678999999999999999964
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.5e-10 Score=110.45 Aligned_cols=105 Identities=18% Similarity=0.256 Sum_probs=85.2
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCccceEEcc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWSM 233 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~v~~~ 233 (371)
++.+|||+|||+|..+..+++.. ..+|+++|+++.+++.++++++..|+. ++.++.+|+.+.. ++ ++||+|++.
T Consensus 250 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~~~~-~~fD~Vl~D 327 (444)
T PRK14902 250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT-NIETKALDARKVHEKFA-EKFDKILVD 327 (444)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCCcccccchhc-ccCCEEEEc
Confidence 37899999999999999999876 479999999999999999999999885 5999999998753 33 789999974
Q ss_pred cc------ccCcCC----------------HHHHHHHHHHhcCCCcEEEEEec
Q 017428 234 ES------GEHMPD----------------KSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 234 ~~------l~~~~~----------------~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
-- +.+-++ ...++.++.++|||||.|+..+.
T Consensus 328 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystc 380 (444)
T PRK14902 328 APCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTC 380 (444)
T ss_pred CCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence 32 111111 13579999999999999997664
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.8e-10 Score=97.60 Aligned_cols=109 Identities=22% Similarity=0.283 Sum_probs=82.2
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC
Q 017428 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF 222 (371)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 222 (371)
+.+++.+...+ +.+|||+|||+|.++..++++ +.+|+++|+++.+++.+++++.. .++++++.+|+.+.++
T Consensus 3 ~~i~~~~~~~~-----~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~---~~~v~ii~~D~~~~~~ 73 (169)
T smart00650 3 DKIVRAANLRP-----GDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAA---ADNLTVIHGDALKFDL 73 (169)
T ss_pred HHHHHhcCCCC-----cCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhcc---CCCEEEEECchhcCCc
Confidence 44555555544 789999999999999999988 78999999999999999988754 2489999999999887
Q ss_pred CCCccceEEccccccCcCCHHHHHHHHHHh--cCCCcEEEEEe
Q 017428 223 PDGQFDLVWSMESGEHMPDKSKFVSELARV--TAPAGTIIIVT 263 (371)
Q Consensus 223 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~--LkpgG~l~i~~ 263 (371)
++..||.|+++--+ ++. ..++.++.+. +.++|.+++..
T Consensus 74 ~~~~~d~vi~n~Py-~~~--~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 74 PKLQPYKVVGNLPY-NIS--TPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred cccCCCEEEECCCc-ccH--HHHHHHHHhcCCCcceEEEEEEH
Confidence 76679999886544 332 2344444433 34677776653
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.2e-10 Score=119.34 Aligned_cols=132 Identities=20% Similarity=0.170 Sum_probs=100.3
Q ss_pred CCEEEEECCCcChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEEEcCCCCCC-CCCCccceEEcccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLA-DKVSFQVGDALQQP-FPDGQFDLVWSMES 235 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~-~~~~~fD~v~~~~~ 235 (371)
+.+|||+|||+|.+++.++.. ++ +|+++|+|+.+++.|+++++.+++. .+++++.+|+.+.- ...++||+|++.--
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 789999999999999999986 54 6999999999999999999999885 58999999986631 11468999998521
Q ss_pred -----------ccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHH
Q 017428 236 -----------GEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVK 304 (371)
Q Consensus 236 -----------l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (371)
.....+...++..+.++|+|||.+++.... .. ++. ..+
T Consensus 618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~-~~----------------------------~~~--~~~ 666 (702)
T PRK11783 618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNK-RG----------------------------FKM--DEE 666 (702)
T ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCC-cc----------------------------CCh--hHH
Confidence 111234567889999999999999876421 10 111 167
Q ss_pred HHHhCCCceEEEEecCCc
Q 017428 305 LLQSLSLEDIKAEDWSQN 322 (371)
Q Consensus 305 ll~~aGF~~v~~~~~~~~ 322 (371)
.+.++|+....+.....+
T Consensus 667 ~~~~~g~~~~~i~~~~~~ 684 (702)
T PRK11783 667 GLAKLGLKAEEITAKTLP 684 (702)
T ss_pred HHHhCCCeEEEEecCCCC
Confidence 788899998877765544
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.4e-10 Score=100.58 Aligned_cols=118 Identities=26% Similarity=0.414 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEE
Q 017428 136 AAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQ 213 (371)
Q Consensus 136 ~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~ 213 (371)
....+++..++.... +.+||||||++|..++.+++.+ +++|+.+|++++..+.|++.++..|+.++|+++
T Consensus 31 ~~~g~lL~~l~~~~~--------~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~ 102 (205)
T PF01596_consen 31 PETGQLLQMLVRLTR--------PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVI 102 (205)
T ss_dssp HHHHHHHHHHHHHHT---------SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEE
T ss_pred HHHHHHHHHHHHhcC--------CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEE
Confidence 344456666665443 7899999999999999999876 589999999999999999999999998899999
Q ss_pred EcCCCCC-C-----CCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 214 VGDALQQ-P-----FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 214 ~~d~~~~-~-----~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
.+|+.+. + .+.++||+|+.-.. -.+....+..+.++|+|||.+++-+.
T Consensus 103 ~gda~~~l~~l~~~~~~~~fD~VFiDa~---K~~y~~y~~~~~~ll~~ggvii~DN~ 156 (205)
T PF01596_consen 103 EGDALEVLPELANDGEEGQFDFVFIDAD---KRNYLEYFEKALPLLRPGGVIIADNV 156 (205)
T ss_dssp ES-HHHHHHHHHHTTTTTSEEEEEEEST---GGGHHHHHHHHHHHEEEEEEEEEETT
T ss_pred EeccHhhHHHHHhccCCCceeEEEEccc---ccchhhHHHHHhhhccCCeEEEEccc
Confidence 9998653 1 12368999998652 24567889999999999999998664
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.4e-10 Score=106.27 Aligned_cols=105 Identities=18% Similarity=0.272 Sum_probs=82.8
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcC--C--CCCeEEEEcCCCCC-CCCCCccceEEc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARG--L--ADKVSFQVGDALQQ-PFPDGQFDLVWS 232 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~--~--~~~v~~~~~d~~~~-~~~~~~fD~v~~ 232 (371)
+.+||+||||+|..+..+++.. ..+|++||+++.+++.|++.+...+ . .++++++.+|+... ....++||+|++
T Consensus 77 p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~ 156 (283)
T PRK00811 77 PKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVIIV 156 (283)
T ss_pred CCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEEE
Confidence 6899999999999999998764 4689999999999999999886432 1 46899999998763 224578999998
Q ss_pred cccccCcCC----HHHHHHHHHHhcCCCcEEEEEe
Q 017428 233 MESGEHMPD----KSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 233 ~~~l~~~~~----~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
...-...+. ...+++.+++.|+|||.+++..
T Consensus 157 D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 157 DSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred CCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 643322221 2678899999999999988753
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.1e-10 Score=108.39 Aligned_cols=107 Identities=21% Similarity=0.255 Sum_probs=77.9
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcC---------CCCCeEEEEcCCCCCC----CCC
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARG---------LADKVSFQVGDALQQP----FPD 224 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~---------~~~~v~~~~~d~~~~~----~~~ 224 (371)
++.+|||+|||-|+-..-....--..++|+|++...++.|+++.+... ..-...|+.+|..... +++
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 589999999998886666555434689999999999999999983311 1124678888876531 333
Q ss_pred --CccceEEccccccCc-CC---HHHHHHHHHHhcCCCcEEEEEec
Q 017428 225 --GQFDLVWSMESGEHM-PD---KSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 225 --~~fD~v~~~~~l~~~-~~---~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
..||+|-|..++|+. .+ ...+++++...|+|||+++.+.+
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 599999999999987 32 35699999999999999999874
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.9e-10 Score=97.11 Aligned_cols=107 Identities=25% Similarity=0.426 Sum_probs=90.1
Q ss_pred CCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE-cCCCCC-C-CCCCccceEEcc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQV-GDALQQ-P-FPDGQFDLVWSM 233 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~-~-~~~~~fD~v~~~ 233 (371)
+.+|||||++.|..++.++... ..+++.+|+++++.+.|+++++..|+.+++..+. +|..+. . ...++||+|+.-
T Consensus 60 ~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliFID 139 (219)
T COG4122 60 PKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVFID 139 (219)
T ss_pred CceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEEEe
Confidence 7899999999999999999987 4689999999999999999999999998899888 476553 1 346999999976
Q ss_pred ccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCC
Q 017428 234 ESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRD 268 (371)
Q Consensus 234 ~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 268 (371)
.. -.+.+.+++.+.++|+|||.+++-......
T Consensus 140 ad---K~~yp~~le~~~~lLr~GGliv~DNvl~~G 171 (219)
T COG4122 140 AD---KADYPEYLERALPLLRPGGLIVADNVLFGG 171 (219)
T ss_pred CC---hhhCHHHHHHHHHHhCCCcEEEEeecccCC
Confidence 32 134578999999999999999997755443
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.2e-10 Score=105.03 Aligned_cols=105 Identities=18% Similarity=0.220 Sum_probs=79.1
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHH--H---HHcCC-CCCeEEEEcCCCCC-CCCCCccceE
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANAL--A---AARGL-ADKVSFQVGDALQQ-PFPDGQFDLV 230 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~--~---~~~~~-~~~v~~~~~d~~~~-~~~~~~fD~v 230 (371)
+.+||+||||+|..+..+++.. ..+|++||+++.+++.|++. + .+... .++++++.+|+.+. ....+.||+|
T Consensus 151 PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDVI 230 (374)
T PRK01581 151 PKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDVI 230 (374)
T ss_pred CCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccEE
Confidence 6799999999999998888754 36899999999999999962 1 11111 46899999998763 3345789999
Q ss_pred Ecccccc---CcCC--HHHHHHHHHHhcCCCcEEEEEe
Q 017428 231 WSMESGE---HMPD--KSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 231 ~~~~~l~---~~~~--~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
++...-. .... -..+++.+++.|+|||.+++..
T Consensus 231 IvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 231 IIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred EEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 9863211 0111 1578999999999999988863
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.6e-10 Score=107.60 Aligned_cols=117 Identities=23% Similarity=0.374 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc
Q 017428 136 AAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVG 215 (371)
Q Consensus 136 ~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~ 215 (371)
.....+++.++..+...+ +.+|||+|||+|.++..+++. ..+|+|+|+|+.+++.|+++++.+++ .+++++.+
T Consensus 280 ~~~e~l~~~vl~~l~~~~-----~~~VLDlgcGtG~~sl~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~-~~v~~~~~ 352 (443)
T PRK13168 280 QVNQKMVARALEWLDPQP-----GDRVLDLFCGLGNFTLPLARQ-AAEVVGVEGVEAMVERARENARRNGL-DNVTFYHA 352 (443)
T ss_pred HHHHHHHHHHHHHhcCCC-----CCEEEEEeccCCHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEe
Confidence 334556677777665543 789999999999999999987 57999999999999999999998887 47999999
Q ss_pred CCCCC----CCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 216 DALQQ----PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 216 d~~~~----~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
|+.+. ++.+++||+|++.---.. ....++.+.+ ++|++.+++.-
T Consensus 353 d~~~~l~~~~~~~~~fD~Vi~dPPr~g---~~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 353 NLEEDFTDQPWALGGFDKVLLDPPRAG---AAEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred ChHHhhhhhhhhcCCCCEEEECcCCcC---hHHHHHHHHh-cCCCeEEEEEe
Confidence 98653 244568999987532221 2345555555 68988888764
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.8e-10 Score=108.58 Aligned_cols=106 Identities=13% Similarity=0.087 Sum_probs=83.1
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEEEcCCCCCC--C--CCCccceEEcc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLA-DKVSFQVGDALQQP--F--PDGQFDLVWSM 233 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~--~--~~~~fD~v~~~ 233 (371)
+.+|||+|||+|.+++.++.....+|+++|+|+.+++.|+++++.+++. .+++++.+|+.+.- + ..++||+|++.
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilD 300 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMD 300 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEEC
Confidence 7899999999999988766542348999999999999999999999885 47999999987641 1 24689999986
Q ss_pred ccccCc---------CCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 234 ESGEHM---------PDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 234 ~~l~~~---------~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
--...- .+...++..+.++|+|||.|+.+..
T Consensus 301 PP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 301 PPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 332111 1234566678899999999998764
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.3e-10 Score=100.31 Aligned_cols=103 Identities=16% Similarity=0.175 Sum_probs=87.0
Q ss_pred CCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C-C----CCCccceE
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P-F----PDGQFDLV 230 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~----~~~~fD~v 230 (371)
+.+|||||+|+|..++.++... +.+|+.+|.+++..+.|++.++..|+.++++++.+|+.+. + + ..++||+|
T Consensus 119 ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~V 198 (278)
T PLN02476 119 AERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFA 198 (278)
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEE
Confidence 7899999999999999999865 4689999999999999999999999988999999998663 2 1 13689999
Q ss_pred EccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
+.-.- -.+...+++.+.++|+|||.+++-+.
T Consensus 199 FIDa~---K~~Y~~y~e~~l~lL~~GGvIV~DNv 229 (278)
T PLN02476 199 FVDAD---KRMYQDYFELLLQLVRVGGVIVMDNV 229 (278)
T ss_pred EECCC---HHHHHHHHHHHHHhcCCCcEEEEecC
Confidence 97642 13457889999999999999888654
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.15 E-value=8.6e-10 Score=115.49 Aligned_cols=131 Identities=21% Similarity=0.205 Sum_probs=96.1
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCC---------------CCCeEEEEcCCCCCCC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGL---------------ADKVSFQVGDALQQPF 222 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~---------------~~~v~~~~~d~~~~~~ 222 (371)
+.+|||+|||+|..++.+++.. ..+|+|+|+|+.+++.|+++++.+++ .++++|+++|+.+...
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 4689999999999999999987 47999999999999999999987643 2479999999876431
Q ss_pred C-CCccceEEcccccc--------------C--------------c------CC----HHHHHHHHHHhcCCCcEEEEEe
Q 017428 223 P-DGQFDLVWSMESGE--------------H--------------M------PD----KSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 223 ~-~~~fD~v~~~~~l~--------------~--------------~------~~----~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
. ...||+|+++--.- | + .| ..+++.++.++|+|||++++-.
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1 23699999852110 0 0 11 2567888889999999888643
Q ss_pred ccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHH-HHHHhCCCceEEEEecC
Q 017428 264 WCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYV-KLLQSLSLEDIKAEDWS 320 (371)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ll~~aGF~~v~~~~~~ 320 (371)
. ....+.+. +++++.||..+.+...+
T Consensus 279 -G------------------------------~~q~~~v~~~l~~~~gf~~~~~~~~~ 305 (1082)
T PLN02672 279 -G------------------------------GRPGQAVCERLFERRGFRITKLWQTK 305 (1082)
T ss_pred -C------------------------------ccHHHHHHHHHHHHCCCCeeEEeeeh
Confidence 1 11244566 58888888877665443
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1e-09 Score=94.33 Aligned_cols=146 Identities=23% Similarity=0.431 Sum_probs=94.8
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcC--------------------------------
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARG-------------------------------- 205 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~-------------------------------- 205 (371)
+..+|||||..|.++..+++.+ ...|.|+|+++..+..|++.+.-..
T Consensus 59 ~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~t 138 (288)
T KOG2899|consen 59 PKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAFT 138 (288)
T ss_pred cceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccccc
Confidence 6789999999999999999999 4579999999999999998754220
Q ss_pred --CCCCeEE-------EEcCCCCCCCCCCccceEEccccccCc----CC--HHHHHHHHHHhcCCCcEEEEEeccCCCCC
Q 017428 206 --LADKVSF-------QVGDALQQPFPDGQFDLVWSMESGEHM----PD--KSKFVSELARVTAPAGTIIIVTWCHRDLA 270 (371)
Q Consensus 206 --~~~~v~~-------~~~d~~~~~~~~~~fD~v~~~~~l~~~----~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~ 270 (371)
.|.++.| ...|+. .+....||+|+|..+-.++ .| ..+++++++++|.|||+|++---..
T Consensus 139 ~~~p~n~~f~~~n~vle~~dfl--~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQpW---- 212 (288)
T KOG2899|consen 139 TDFPDNVWFQKENYVLESDDFL--DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQPW---- 212 (288)
T ss_pred ccCCcchhcccccEEEecchhh--hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCCch----
Confidence 0111111 111222 1234679999886554333 22 4789999999999999999842111
Q ss_pred cCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhC--CCceEE
Q 017428 271 PSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSL--SLEDIK 315 (371)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~a--GF~~v~ 315 (371)
..+.. ..+..... ...+..-+..++.+..+|.+. ||+-++
T Consensus 213 ---ksY~k-aar~~e~~-~~ny~~i~lkp~~f~~~l~q~~vgle~~e 254 (288)
T KOG2899|consen 213 ---KSYKK-AARRSEKL-AANYFKIFLKPEDFEDWLNQIVVGLESVE 254 (288)
T ss_pred ---HHHHH-HHHHHHHh-hcCccceecCHHHHHhhhhhhhhheeeec
Confidence 11111 12222222 222233357899999999886 666444
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.4e-10 Score=96.01 Aligned_cols=103 Identities=30% Similarity=0.456 Sum_probs=82.8
Q ss_pred CEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C--CCCCccceEEcccc
Q 017428 160 KNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P--FPDGQFDLVWSMES 235 (371)
Q Consensus 160 ~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~--~~~~~fD~v~~~~~ 235 (371)
..+||||||.|.+...+|... +..++|+|++...+..+.+++...++ .|+.++.+|+... . ++++++|.|+..+-
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l-~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL-KNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT-SSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc-cceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 389999999999999999998 78999999999999999999999888 6999999999873 2 45689999988654
Q ss_pred ccCcCC--------HHHHHHHHHHhcCCCcEEEEEe
Q 017428 236 GEHMPD--------KSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 236 l~~~~~--------~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
=-+... -..++..+.++|+|||.|.+.+
T Consensus 98 DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 98 DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 333221 1479999999999999999976
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.6e-09 Score=95.88 Aligned_cols=152 Identities=14% Similarity=0.210 Sum_probs=97.1
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHc-CCCCCeEEEE-cCCCCCC----CCCCccceE
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAAR-GLADKVSFQV-GDALQQP----FPDGQFDLV 230 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~-~~~~~v~~~~-~d~~~~~----~~~~~fD~v 230 (371)
+..+|||||||+|.....++.+. +.+++|+|+++.+++.|+++++.+ ++..++.+.. .|..++. .+.+.||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 46899999999998887777665 789999999999999999999999 7888888864 3332221 245789999
Q ss_pred EccccccCcCCH-----HHHHHHHH----------------HhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhh
Q 017428 231 WSMESGEHMPDK-----SKFVSELA----------------RVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICD 289 (371)
Q Consensus 231 ~~~~~l~~~~~~-----~~~l~~~~----------------~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (371)
+|+=-++.-.+. .+-.+++. +++.+||.+.++... ......+... .
T Consensus 194 vcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~m-----------i~eS~~~~~~--~ 260 (321)
T PRK11727 194 LCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRM-----------IEESKAFAKQ--V 260 (321)
T ss_pred EeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHh-----------hHHHHHHHhh--C
Confidence 998665532211 11222222 333455555443311 0111111111 1
Q ss_pred ccC---CCCCCCHHHHHHHHHhCCCceEEEEecCCc
Q 017428 290 AYY---LPAWCSTADYVKLLQSLSLEDIKAEDWSQN 322 (371)
Q Consensus 290 ~~~---~~~~~~~~~~~~ll~~aGF~~v~~~~~~~~ 322 (371)
.+. ...--+.+.+.+.|++.|...+.+.++...
T Consensus 261 gwftsmv~kk~~l~~l~~~L~~~~~~~~~~~e~~qG 296 (321)
T PRK11727 261 LWFTSLVSKKENLPPLYRALKKVGAVEVKTIEMAQG 296 (321)
T ss_pred cEEEEEeeccCCHHHHHHHHHHcCCceEEEEEEeCC
Confidence 111 112247889999999999988877766544
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.7e-10 Score=94.67 Aligned_cols=105 Identities=21% Similarity=0.233 Sum_probs=75.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcC--CCCCeEEEEcCCCCCC----CCCCccceE
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARG--LADKVSFQVGDALQQP----FPDGQFDLV 230 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~----~~~~~fD~v 230 (371)
++.+|||||||+|..++.++... ..+|+..|..+ .++..+.+++.++ ...++.+...|..+.. ....+||+|
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~I 123 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVI 123 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEE
T ss_pred CCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCEE
Confidence 47899999999999999999874 67999999999 9999999998876 5578999999886631 334689999
Q ss_pred EccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
++..+++.-...+.+++.+.++|+|+|.+++..
T Consensus 124 lasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~ 156 (173)
T PF10294_consen 124 LASDVLYDEELFEPLVRTLKRLLKPNGKVLLAY 156 (173)
T ss_dssp EEES--S-GGGHHHHHHHHHHHBTT-TTEEEEE
T ss_pred EEecccchHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 999999987788999999999999999977765
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=9.5e-10 Score=109.07 Aligned_cols=105 Identities=23% Similarity=0.281 Sum_probs=80.5
Q ss_pred CCEEEEECCCcChHHHHHHHHcC-CEEEEEeCCHHHHHHHHHH--HHHc---CC-CCCeEEEEcCCCCC-CCCCCccceE
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANAL--AAAR---GL-ADKVSFQVGDALQQ-PFPDGQFDLV 230 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~--~~~~---~~-~~~v~~~~~d~~~~-~~~~~~fD~v 230 (371)
+.+|||||||+|..+..+++... .+|+++|+++++++.++++ +... .. .++++++.+|..+. ...+++||+|
T Consensus 298 ~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDvI 377 (521)
T PRK03612 298 PRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDVI 377 (521)
T ss_pred CCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCEE
Confidence 68999999999999999987533 6999999999999999983 3221 11 25899999998763 2234789999
Q ss_pred EccccccCcCC-----HHHHHHHHHHhcCCCcEEEEEe
Q 017428 231 WSMESGEHMPD-----KSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 231 ~~~~~l~~~~~-----~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
++.......+. ..++++.+++.|||||.+++..
T Consensus 378 i~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 378 IVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred EEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 98754332221 1468999999999999998864
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.5e-09 Score=99.95 Aligned_cols=105 Identities=22% Similarity=0.370 Sum_probs=81.5
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcC--C-CCCeEEEEcCCCCC--CCCCCccceEEc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARG--L-ADKVSFQVGDALQQ--PFPDGQFDLVWS 232 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~~--~~~~~~fD~v~~ 232 (371)
+.+||+||||.|..+..+++.. ..+|+.+|+++.+++.+++.+...+ + .++++++.+|+... ..++++||+|++
T Consensus 92 pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi~ 171 (308)
T PLN02366 92 PKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAIIV 171 (308)
T ss_pred CCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEEE
Confidence 7899999999999999998764 3589999999999999999876532 2 36899999997543 123578999998
Q ss_pred cccccCcCC----HHHHHHHHHHhcCCCcEEEEEe
Q 017428 233 MESGEHMPD----KSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 233 ~~~l~~~~~----~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
...-.+.+. ...+++.+++.|+|||.+++..
T Consensus 172 D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 172 DSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred cCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 543322221 2578999999999999997753
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.5e-09 Score=96.65 Aligned_cols=115 Identities=18% Similarity=0.262 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc
Q 017428 138 QVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVG 215 (371)
Q Consensus 138 ~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~ 215 (371)
..+++..++.... ..+|||||+++|..++.++... +.+|+.+|.+++..+.|++.++..|+.++|+++.+
T Consensus 67 ~g~lL~~l~~~~~--------ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G 138 (247)
T PLN02589 67 EGQFLNMLLKLIN--------AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREG 138 (247)
T ss_pred HHHHHHHHHHHhC--------CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEec
Confidence 3445555555443 6899999999999999999876 57999999999999999999999999999999999
Q ss_pred CCCCC-C-C-----CCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 216 DALQQ-P-F-----PDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 216 d~~~~-~-~-----~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
|+.+. + + ..++||+|+.-.- -......++.+.++|+|||.+++-+
T Consensus 139 ~a~e~L~~l~~~~~~~~~fD~iFiDad---K~~Y~~y~~~~l~ll~~GGviv~DN 190 (247)
T PLN02589 139 PALPVLDQMIEDGKYHGTFDFIFVDAD---KDNYINYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_pred cHHHHHHHHHhccccCCcccEEEecCC---HHHhHHHHHHHHHhcCCCeEEEEcC
Confidence 98663 2 1 1368999998642 2345678888999999999988744
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.6e-09 Score=98.79 Aligned_cols=104 Identities=18% Similarity=0.267 Sum_probs=80.1
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcC---CCCCeEEEEcCCCCC-CCCCCccceEEcc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARG---LADKVSFQVGDALQQ-PFPDGQFDLVWSM 233 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~-~~~~~~fD~v~~~ 233 (371)
+.+||+||||+|..+..+++.. ..+|+++|+++.+++.+++.+...+ -.++++++.+|.... ....++||+|++.
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D 152 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIVD 152 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEEe
Confidence 5699999999999999888765 4689999999999999999875432 125788888887552 1124789999986
Q ss_pred ccccCcC--C--HHHHHHHHHHhcCCCcEEEEE
Q 017428 234 ESGEHMP--D--KSKFVSELARVTAPAGTIIIV 262 (371)
Q Consensus 234 ~~l~~~~--~--~~~~l~~~~~~LkpgG~l~i~ 262 (371)
.....-+ + ...+++.+.+.|+|||.+++.
T Consensus 153 ~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 153 STDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred CCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 5422211 2 367899999999999999986
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.2e-09 Score=100.09 Aligned_cols=115 Identities=23% Similarity=0.252 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC
Q 017428 138 QVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA 217 (371)
Q Consensus 138 ~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~ 217 (371)
...+++.+.+++... ++.+|||+|||+|.++..+++. +.+|+|+|+++.+++.|+++++.+++ ++++|+++|+
T Consensus 158 ~~~l~~~v~~~l~~~-----~~~~VLDl~cG~G~~sl~la~~-~~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~ 230 (315)
T PRK03522 158 AAQLYATARDWVREL-----PPRSMWDLFCGVGGFGLHCATP-GMQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDS 230 (315)
T ss_pred HHHHHHHHHHHHHhc-----CCCEEEEccCCCCHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCH
Confidence 344444444444322 2689999999999999999986 68999999999999999999999988 6899999999
Q ss_pred CCCCC-CCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEE
Q 017428 218 LQQPF-PDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262 (371)
Q Consensus 218 ~~~~~-~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 262 (371)
.+... ..+.||+|++.---..+ ...+++ +...++|++.+++.
T Consensus 231 ~~~~~~~~~~~D~Vv~dPPr~G~--~~~~~~-~l~~~~~~~ivyvs 273 (315)
T PRK03522 231 TQFATAQGEVPDLVLVNPPRRGI--GKELCD-YLSQMAPRFILYSS 273 (315)
T ss_pred HHHHHhcCCCCeEEEECCCCCCc--cHHHHH-HHHHcCCCeEEEEE
Confidence 77532 23579999986321111 123333 33446787766664
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.8e-09 Score=90.13 Aligned_cols=103 Identities=14% Similarity=0.062 Sum_probs=78.7
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-CCCCCccceEEcccccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-PFPDGQFDLVWSMESGE 237 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~v~~~~~l~ 237 (371)
+.+|||+|||+|.+++.++.+...+|+++|.++..++.++++++..++ .++.++.+|+.+. +...++||+|++.--+.
T Consensus 54 ~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~-~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~ 132 (199)
T PRK10909 54 DARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKA-GNARVVNTNALSFLAQPGTPHNVVFVDPPFR 132 (199)
T ss_pred CCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEEEchHHHHHhhcCCCceEEEECCCCC
Confidence 679999999999999876555457999999999999999999998887 4799999998663 22245799999875532
Q ss_pred CcCCHHHHHHHHHH--hcCCCcEEEEEe
Q 017428 238 HMPDKSKFVSELAR--VTAPAGTIIIVT 263 (371)
Q Consensus 238 ~~~~~~~~l~~~~~--~LkpgG~l~i~~ 263 (371)
. .-...+++.+.. +|+|+|++++..
T Consensus 133 ~-g~~~~~l~~l~~~~~l~~~~iv~ve~ 159 (199)
T PRK10909 133 K-GLLEETINLLEDNGWLADEALIYVES 159 (199)
T ss_pred C-ChHHHHHHHHHHCCCcCCCcEEEEEe
Confidence 1 223455555554 378988888764
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=99.04 E-value=7.1e-09 Score=101.00 Aligned_cols=117 Identities=19% Similarity=0.311 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc
Q 017428 136 AAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVG 215 (371)
Q Consensus 136 ~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~ 215 (371)
.....++..++..+.+.+ +.+|||+|||+|.++..+++. ..+|+|+|+++.+++.|++++..+++ .+++|+.+
T Consensus 275 ~~~~~l~~~~~~~l~~~~-----~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~~~-~nv~~~~~ 347 (431)
T TIGR00479 275 GQNEKLVDRALEALELQG-----EELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELNGI-ANVEFLAG 347 (431)
T ss_pred HHHHHHHHHHHHHhccCC-----CCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHhCC-CceEEEeC
Confidence 344455666666655443 689999999999999999987 56899999999999999999998887 58999999
Q ss_pred CCCCC----CCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEE
Q 017428 216 DALQQ----PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262 (371)
Q Consensus 216 d~~~~----~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 262 (371)
|+.+. ++.+++||+|++.-.-. .-...+++.+.+ ++|++.+++.
T Consensus 348 d~~~~l~~~~~~~~~~D~vi~dPPr~--G~~~~~l~~l~~-l~~~~ivyvs 395 (431)
T TIGR00479 348 TLETVLPKQPWAGQIPDVLLLDPPRK--GCAAEVLRTIIE-LKPERIVYVS 395 (431)
T ss_pred CHHHHHHHHHhcCCCCCEEEECcCCC--CCCHHHHHHHHh-cCCCEEEEEc
Confidence 98652 23346799998643211 112455665554 8898877764
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=2e-08 Score=91.77 Aligned_cols=151 Identities=22% Similarity=0.231 Sum_probs=109.3
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 238 (371)
-...+|+|.|.|..+..+...+ .+|-++++....+..++..+. +.|+.+-+|+.+. .|.+ |+|++.+++||
T Consensus 178 v~~avDvGgGiG~v~k~ll~~f-p~ik~infdlp~v~~~a~~~~-----~gV~~v~gdmfq~-~P~~--daI~mkWiLhd 248 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKY-PHIKGINFDLPFVLAAAPYLA-----PGVEHVAGDMFQD-TPKG--DAIWMKWILHD 248 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhC-CCCceeecCHHHHHhhhhhhc-----CCcceeccccccc-CCCc--CeEEEEeeccc
Confidence 4679999999999999999865 469999999888877776553 2388889998876 4544 69999999999
Q ss_pred cCCH--HHHHHHHHHhcCCCcEEEEEeccCCCCCcCc---cccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCce
Q 017428 239 MPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSE---ESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLED 313 (371)
Q Consensus 239 ~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~ 313 (371)
++|. .++|++++..|+|||.+++.|...+...... ...... .+.+.......+. -.+..+++.++.++||.+
T Consensus 249 wtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~-~d~lm~~~~~~Gk--ert~~e~q~l~~~~gF~~ 325 (342)
T KOG3178|consen 249 WTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRD-MDLLMLTQTSGGK--ERTLKEFQALLPEEGFPV 325 (342)
T ss_pred CChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeeh-hHHHHHHHhccce--eccHHHHHhcchhhcCce
Confidence 9764 7999999999999999999997444311111 111111 1222222222222 248999999999999998
Q ss_pred EEEEecCC
Q 017428 314 IKAEDWSQ 321 (371)
Q Consensus 314 v~~~~~~~ 321 (371)
..+.....
T Consensus 326 ~~~~~~~~ 333 (342)
T KOG3178|consen 326 CMVALTAY 333 (342)
T ss_pred eEEEeccC
Confidence 87765433
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.4e-09 Score=94.77 Aligned_cols=107 Identities=22% Similarity=0.267 Sum_probs=82.9
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCC-----CCeEEEEcCCCCC------CCCCCc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLA-----DKVSFQVGDALQQ------PFPDGQ 226 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-----~~v~~~~~d~~~~------~~~~~~ 226 (371)
++..++|+|||-|+-++..-+..-..++|+|+++..++.|+++.+...-. -.+.|+.+|.... ++.+.+
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~ 196 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPR 196 (389)
T ss_pred cccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCC
Confidence 37789999999999887776653358999999999999999987755211 1378899987542 334555
Q ss_pred cceEEccccccCc-C---CHHHHHHHHHHhcCCCcEEEEEec
Q 017428 227 FDLVWSMESGEHM-P---DKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 227 fD~v~~~~~l~~~-~---~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
||+|-|-.++|+- . ....+++++.+.|+|||+++-+.+
T Consensus 197 fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiP 238 (389)
T KOG1975|consen 197 FDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIP 238 (389)
T ss_pred cceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecC
Confidence 9999888888765 2 346789999999999999998763
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.5e-09 Score=92.07 Aligned_cols=106 Identities=23% Similarity=0.361 Sum_probs=71.1
Q ss_pred CCCEEEEECCCcCh----HHHHHHHHc------CCEEEEEeCCHHHHHHHHHHH--------------HHc-----C---
Q 017428 158 RPKNVVDVGCGIGG----SSRYLAKKF------GAKCQGITLSPVQAQRANALA--------------AAR-----G--- 205 (371)
Q Consensus 158 ~~~~VLDlG~GtG~----~~~~l~~~~------~~~v~gvD~s~~~~~~a~~~~--------------~~~-----~--- 205 (371)
+..+|+..||+||. +++.+.+.. ..+|+|+|+|+.+++.|++-. ++. +
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 36899999999998 444555522 258999999999999987531 000 0
Q ss_pred -----CCCCeEEEEcCCCCCCCCCCccceEEccccccCcCCH--HHHHHHHHHhcCCCcEEEEEe
Q 017428 206 -----LADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 206 -----~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+-.+|.|...|+.+.+.+.+.||+|+|++++.++... ..+++.+++.|+|||+|++..
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 1246999999998843346889999999999999654 789999999999999999964
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.7e-09 Score=93.23 Aligned_cols=93 Identities=20% Similarity=0.284 Sum_probs=72.8
Q ss_pred CCEEEEECCCcChHHHHHHHHc----CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF----GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSME 234 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~ 234 (371)
+.+|||+|||+|.++..++++. ..+|+++|+++.+++.|+++. .++.++..|+...++ +++||+|+++-
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~------~~~~~~~~D~~~~~~-~~~FDlIIsNP 122 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV------PEATWINADALTTEF-DTLFDMAISNP 122 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc------cCCEEEEcchhcccc-cCCccEEEECC
Confidence 6799999999999999998763 358999999999999999764 358899999987654 57899999975
Q ss_pred cccCc--CC----------HHHHHHHHHHhcCCCcE
Q 017428 235 SGEHM--PD----------KSKFVSELARVTAPAGT 258 (371)
Q Consensus 235 ~l~~~--~~----------~~~~l~~~~~~LkpgG~ 258 (371)
-+.-. .+ ...+++.+.+++++|+.
T Consensus 123 PY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 123 PFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 44322 11 34688888986676664
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.7e-09 Score=98.40 Aligned_cols=103 Identities=23% Similarity=0.294 Sum_probs=85.1
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
+++.|||+|||||.++...++....+|++||-|..+ +.|++.+..+++.+.++++.+.+++..+|.++.|+|++-++=+
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy 138 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGY 138 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhH
Confidence 378999999999999999999855689999998866 9999999999998889999999999877778999999865443
Q ss_pred Cc--C-CHHHHHHHHHHhcCCCcEEEE
Q 017428 238 HM--P-DKSKFVSELARVTAPAGTIII 261 (371)
Q Consensus 238 ~~--~-~~~~~l~~~~~~LkpgG~l~i 261 (371)
.+ + -...++-.=-+.|+|||.++=
T Consensus 139 ~Ll~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 139 FLLYESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred HHHHhhhhhhhhhhhhhccCCCceEcc
Confidence 33 2 235566666789999998763
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.4e-09 Score=98.79 Aligned_cols=105 Identities=16% Similarity=0.205 Sum_probs=82.2
Q ss_pred CCEEEEECCCcCh----HHHHHHHHc-----CCEEEEEeCCHHHHHHHHHHHH------------------H--------
Q 017428 159 PKNVVDVGCGIGG----SSRYLAKKF-----GAKCQGITLSPVQAQRANALAA------------------A-------- 203 (371)
Q Consensus 159 ~~~VLDlG~GtG~----~~~~l~~~~-----~~~v~gvD~s~~~~~~a~~~~~------------------~-------- 203 (371)
..+|+..||+||. +++.+.+.. ..+|+|+|+|+.+++.|++-.- .
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 5899999999998 444454532 2579999999999999987520 0
Q ss_pred ----cCCCCCeEEEEcCCCCCCCC-CCccceEEccccccCcCC--HHHHHHHHHHhcCCCcEEEEEe
Q 017428 204 ----RGLADKVSFQVGDALQQPFP-DGQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 204 ----~~~~~~v~~~~~d~~~~~~~-~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
..+-..|.|.+.|+.+.+++ .+.||+|+|.+++.|+.. ..++++++++.|+|||+|++..
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 01224688999999885543 588999999999999954 5889999999999999988854
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.6e-09 Score=92.57 Aligned_cols=136 Identities=18% Similarity=0.195 Sum_probs=99.1
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcC-CCCCeEEEEcCCCCC--CCCCCccceEEcc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARG-LADKVSFQVGDALQQ--PFPDGQFDLVWSM 233 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~--~~~~~~fD~v~~~ 233 (371)
.+.+|||...|-|..++..+++ |+ +|+.++.++..++.|.-+-=..+ ...+++++.+|+.+. .+++++||+|+--
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~r-GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHD 212 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALER-GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIHD 212 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHc-CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEeeC
Confidence 4899999999999999999998 77 99999999999988765311111 113578999998775 4789999999852
Q ss_pred c-cccCcCC--HHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCC
Q 017428 234 E-SGEHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLS 310 (371)
Q Consensus 234 ~-~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aG 310 (371)
- -+.+... -..+.++++|+|||||.++-..-...... . ..--+..+.+.|+++|
T Consensus 213 PPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ry--------------------r---G~d~~~gVa~RLr~vG 269 (287)
T COG2521 213 PPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRY--------------------R---GLDLPKGVAERLRRVG 269 (287)
T ss_pred CCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCccc--------------------c---cCChhHHHHHHHHhcC
Confidence 1 1111122 26899999999999999998763322111 0 1124667889999999
Q ss_pred CceEEEE
Q 017428 311 LEDIKAE 317 (371)
Q Consensus 311 F~~v~~~ 317 (371)
|.+|...
T Consensus 270 F~~v~~~ 276 (287)
T COG2521 270 FEVVKKV 276 (287)
T ss_pred ceeeeee
Confidence 9987764
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.94 E-value=3e-08 Score=82.67 Aligned_cols=125 Identities=20% Similarity=0.152 Sum_probs=90.1
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 238 (371)
+..|+|+|||||.+++..+-.....|+++|+++++++.++++..+.+ .++.|..+|+.+.. +.||.++.+--+..
T Consensus 46 g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~--g~v~f~~~dv~~~~---~~~dtvimNPPFG~ 120 (198)
T COG2263 46 GKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL--GDVEFVVADVSDFR---GKFDTVIMNPPFGS 120 (198)
T ss_pred CCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhC--CceEEEEcchhhcC---CccceEEECCCCcc
Confidence 77899999999999998877534789999999999999999998843 68999999998864 67898888755443
Q ss_pred c---CCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEE
Q 017428 239 M---PDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIK 315 (371)
Q Consensus 239 ~---~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~ 315 (371)
. .|+ .++..+.+.- -+++-.. ...+.+-+++..+++|+.+..
T Consensus 121 ~~rhaDr-~Fl~~Ale~s---~vVYsiH-------------------------------~a~~~~f~~~~~~~~G~~v~~ 165 (198)
T COG2263 121 QRRHADR-PFLLKALEIS---DVVYSIH-------------------------------KAGSRDFVEKFAADLGGTVTH 165 (198)
T ss_pred ccccCCH-HHHHHHHHhh---heEEEee-------------------------------ccccHHHHHHHHHhcCCeEEE
Confidence 3 333 4555555542 1111110 112677788899999998877
Q ss_pred EEecCCcc
Q 017428 316 AEDWSQNV 323 (371)
Q Consensus 316 ~~~~~~~~ 323 (371)
.....-++
T Consensus 166 ~~~~~~~i 173 (198)
T COG2263 166 IERARFPI 173 (198)
T ss_pred EEEEEEec
Confidence 65544444
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.9e-09 Score=91.10 Aligned_cols=103 Identities=24% Similarity=0.352 Sum_probs=88.0
Q ss_pred CEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--C-CCCCccceEEcccc
Q 017428 160 KNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--P-FPDGQFDLVWSMES 235 (371)
Q Consensus 160 ~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~-~~~~~fD~v~~~~~ 235 (371)
..+||||||.|.+...+|++. ...++|||+....+..|.+++...++. |+.++..|+... . +++++.|-|+.+..
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 489999999999999999998 678999999999999999999999985 999999998774 1 34569999998765
Q ss_pred ccCcCCH--------HHHHHHHHHhcCCCcEEEEEe
Q 017428 236 GEHMPDK--------SKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 236 l~~~~~~--------~~~l~~~~~~LkpgG~l~i~~ 263 (371)
=-+.... ..+++.+.++|+|||.|.+.+
T Consensus 129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 129 DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 4443221 479999999999999999986
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.3e-08 Score=87.64 Aligned_cols=105 Identities=18% Similarity=0.205 Sum_probs=83.1
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----CCCCCccceEEc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-----PFPDGQFDLVWS 232 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~fD~v~~ 232 (371)
+..|||+|||+|..+..++..+ .+.|++||.|+.++..|.++++..++.+++.++..+++.. +...+++|++++
T Consensus 149 ~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvs 228 (328)
T KOG2904|consen 149 HTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVS 228 (328)
T ss_pred cceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEec
Confidence 5689999999999999999877 6899999999999999999999999988999887766543 244688999998
Q ss_pred cccccCcC--------------------------CHHHHHHHHHHhcCCCcEEEEEe
Q 017428 233 MESGEHMP--------------------------DKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 233 ~~~l~~~~--------------------------~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+--.-.-. ....++.-+.|.|+|||.+.+..
T Consensus 229 NPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~ 285 (328)
T KOG2904|consen 229 NPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLEL 285 (328)
T ss_pred CCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEe
Confidence 53221111 11245666789999999988865
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.8e-07 Score=81.83 Aligned_cols=145 Identities=21% Similarity=0.231 Sum_probs=102.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHH---cC-------------------------C---
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAA---RG-------------------------L--- 206 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~---~~-------------------------~--- 206 (371)
.+.+||--|||.|.++..++.. |..+.|.|.|-.|+-..+-.+.. .+ +
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~-G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv 134 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL-GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDV 134 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc-cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCc
Confidence 4689999999999999999998 88999999999997655443332 00 0
Q ss_pred --------CCCeEEEEcCCCCCCCCC---CccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccc
Q 017428 207 --------ADKVSFQVGDALQQPFPD---GQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEES 275 (371)
Q Consensus 207 --------~~~v~~~~~d~~~~~~~~---~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~ 275 (371)
+.++....+|+.+.-.++ ++||+|+.++.+-..++.-..++.+.++|||||..+=..+-.-...+.
T Consensus 135 ~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~--- 211 (270)
T PF07942_consen 135 DPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPM--- 211 (270)
T ss_pred CcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCC---
Confidence 235667777776653233 789999999888888899999999999999999555432110000000
Q ss_pred cChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEEEe
Q 017428 276 LQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAED 318 (371)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~ 318 (371)
.......--.+.+++..+++..||+++..+.
T Consensus 212 ------------~~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 212 ------------SIPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred ------------CCCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 0000000125899999999999999987765
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.4e-08 Score=93.24 Aligned_cols=93 Identities=20% Similarity=0.309 Sum_probs=75.1
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 017428 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (371)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (371)
.++..+++.+.+.+ +.+|||||||+|.++..+++. +.+|+++|+++.+++.+++++...+..++++++.+|+.+
T Consensus 23 ~i~~~Iv~~~~~~~-----~~~VLEIG~G~G~LT~~Ll~~-~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~ 96 (294)
T PTZ00338 23 LVLDKIVEKAAIKP-----TDTVLEIGPGTGNLTEKLLQL-AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALK 96 (294)
T ss_pred HHHHHHHHhcCCCC-----cCEEEEecCchHHHHHHHHHh-CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhh
Confidence 35667777766654 789999999999999999987 678999999999999999998876655789999999988
Q ss_pred CCCCCCccceEEccccccCcCC
Q 017428 220 QPFPDGQFDLVWSMESGEHMPD 241 (371)
Q Consensus 220 ~~~~~~~fD~v~~~~~l~~~~~ 241 (371)
.++ ..||.|+++.- +++..
T Consensus 97 ~~~--~~~d~VvaNlP-Y~Ist 115 (294)
T PTZ00338 97 TEF--PYFDVCVANVP-YQISS 115 (294)
T ss_pred hcc--cccCEEEecCC-cccCc
Confidence 654 46898887543 34443
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.87 E-value=1e-08 Score=93.53 Aligned_cols=85 Identities=22% Similarity=0.277 Sum_probs=67.8
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (371)
+++.+++.+.+.+ +.+|||||||+|.++..+++. +.+|+|+|+++.|++.+++++.. ++++++++|+.+.
T Consensus 30 i~~~i~~~l~~~~-----~~~VLEiG~G~G~lt~~L~~~-~~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~ 99 (272)
T PRK00274 30 ILDKIVDAAGPQP-----GDNVLEIGPGLGALTEPLLER-AAKVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKV 99 (272)
T ss_pred HHHHHHHhcCCCC-----cCeEEEeCCCccHHHHHHHHh-CCcEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcC
Confidence 4566666666554 789999999999999999998 56999999999999999887632 5799999999988
Q ss_pred CCCCCccceEEcccc
Q 017428 221 PFPDGQFDLVWSMES 235 (371)
Q Consensus 221 ~~~~~~fD~v~~~~~ 235 (371)
++++-.+|.|+++--
T Consensus 100 ~~~~~~~~~vv~NlP 114 (272)
T PRK00274 100 DLSELQPLKVVANLP 114 (272)
T ss_pred CHHHcCcceEEEeCC
Confidence 754322577777643
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.4e-08 Score=80.25 Aligned_cols=101 Identities=21% Similarity=0.201 Sum_probs=86.4
Q ss_pred CCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CCCCccceEE
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FPDGQFDLVW 231 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~~fD~v~ 231 (371)
+.-|||+|.|||.++..+.++. ...++.++.|++......+.. +.+.++.+|+.++. +.+..||.|+
T Consensus 49 glpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~------p~~~ii~gda~~l~~~l~e~~gq~~D~vi 122 (194)
T COG3963 49 GLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY------PGVNIINGDAFDLRTTLGEHKGQFFDSVI 122 (194)
T ss_pred CCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC------CCccccccchhhHHHHHhhcCCCeeeeEE
Confidence 7889999999999999999875 578999999999998888764 56778999988864 5577899999
Q ss_pred ccccccCcCC--HHHHHHHHHHhcCCCcEEEEEecc
Q 017428 232 SMESGEHMPD--KSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 232 ~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
+..-+-.++- ..++++.+...|.+||.++-...+
T Consensus 123 S~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 123 SGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred eccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 9987777754 368899999999999999988765
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.8e-08 Score=84.99 Aligned_cols=122 Identities=14% Similarity=0.204 Sum_probs=92.2
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC---CCccceEEccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP---DGQFDLVWSME 234 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~fD~v~~~~ 234 (371)
...++|||||=+......... -..|+.||+.+. .-.+.+.|+.+.|+| .+.||+|.++.
T Consensus 51 ~~lrlLEVGals~~N~~s~~~--~fdvt~IDLns~----------------~~~I~qqDFm~rplp~~~~e~FdvIs~SL 112 (219)
T PF11968_consen 51 PKLRLLEVGALSTDNACSTSG--WFDVTRIDLNSQ----------------HPGILQQDFMERPLPKNESEKFDVISLSL 112 (219)
T ss_pred ccceEEeecccCCCCcccccC--ceeeEEeecCCC----------------CCCceeeccccCCCCCCcccceeEEEEEE
Confidence 357999999976554443322 246999999872 234578898887754 68899999999
Q ss_pred cccCcCCH---HHHHHHHHHhcCCCcE-----EEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHH
Q 017428 235 SGEHMPDK---SKFVSELARVTAPAGT-----IIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLL 306 (371)
Q Consensus 235 ~l~~~~~~---~~~l~~~~~~LkpgG~-----l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 306 (371)
+|.+++++ ...++++++.|+|+|. |+++.+. .- ....++++.+.|..+|
T Consensus 113 VLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~-------~C----------------v~NSRy~~~~~l~~im 169 (219)
T PF11968_consen 113 VLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPL-------PC----------------VTNSRYMTEERLREIM 169 (219)
T ss_pred EEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCc-------hH----------------hhcccccCHHHHHHHH
Confidence 99999986 5799999999999999 8877521 00 1122467899999999
Q ss_pred HhCCCceEEEEecC
Q 017428 307 QSLSLEDIKAEDWS 320 (371)
Q Consensus 307 ~~aGF~~v~~~~~~ 320 (371)
+..||..+..+.-.
T Consensus 170 ~~LGf~~~~~~~~~ 183 (219)
T PF11968_consen 170 ESLGFTRVKYKKSK 183 (219)
T ss_pred HhCCcEEEEEEecC
Confidence 99999998876533
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.9e-08 Score=91.13 Aligned_cols=87 Identities=29% Similarity=0.393 Sum_probs=71.1
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 017428 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (371)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (371)
..++.+++.+.+.+ +.+|||||||+|.++..+++. +.+|+++|+++.+++.+++++.. .+++.++.+|+.+
T Consensus 16 ~~~~~iv~~~~~~~-----~~~VLEIG~G~G~lt~~L~~~-~~~v~~vEid~~~~~~l~~~~~~---~~~v~ii~~D~~~ 86 (258)
T PRK14896 16 RVVDRIVEYAEDTD-----GDPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLAEFLRDDEIA---AGNVEIIEGDALK 86 (258)
T ss_pred HHHHHHHHhcCCCC-----cCeEEEEeCccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHhcc---CCCEEEEEecccc
Confidence 35566666666554 789999999999999999998 67999999999999999988754 2589999999998
Q ss_pred CCCCCCccceEEcccccc
Q 017428 220 QPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 220 ~~~~~~~fD~v~~~~~l~ 237 (371)
.+++ .||.|+++...+
T Consensus 87 ~~~~--~~d~Vv~NlPy~ 102 (258)
T PRK14896 87 VDLP--EFNKVVSNLPYQ 102 (258)
T ss_pred CCch--hceEEEEcCCcc
Confidence 7754 489998876543
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.6e-08 Score=95.46 Aligned_cols=100 Identities=24% Similarity=0.301 Sum_probs=76.3
Q ss_pred CCEEEEECCCcChHHHHHHHHc-----CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-----GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSM 233 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~ 233 (371)
+..|||||||+|.+....++.. ..+|++|+-++.+....+++++.+++.++|+++.+|+++...+ +++|+|++=
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp-ekvDIIVSE 265 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP-EKVDIIVSE 265 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS-S-EEEEEE-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC-CceeEEEEe
Confidence 5789999999999987666542 2589999999999888888888888989999999999998755 689999863
Q ss_pred ccccCc---CCHHHHHHHHHHhcCCCcEEE
Q 017428 234 ESGEHM---PDKSKFVSELARVTAPAGTII 260 (371)
Q Consensus 234 ~~l~~~---~~~~~~l~~~~~~LkpgG~l~ 260 (371)
. +..+ +-....+....|.|||||.++
T Consensus 266 l-LGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 266 L-LGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp ---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred c-cCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 2 2222 334678889999999998765
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.6e-08 Score=90.35 Aligned_cols=114 Identities=19% Similarity=0.221 Sum_probs=89.9
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc-CCCCCC
Q 017428 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVG-DALQQP 221 (371)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~ 221 (371)
..++....+++ +..|||-=||||.+++...-. |++++|.|++..|++-|+.+++..++. ...+... |+.++|
T Consensus 187 R~mVNLa~v~~-----G~~vlDPFcGTGgiLiEagl~-G~~viG~Did~~mv~gak~Nl~~y~i~-~~~~~~~~Da~~lp 259 (347)
T COG1041 187 RAMVNLARVKR-----GELVLDPFCGTGGILIEAGLM-GARVIGSDIDERMVRGAKINLEYYGIE-DYPVLKVLDATNLP 259 (347)
T ss_pred HHHHHHhcccc-----CCEeecCcCCccHHHHhhhhc-CceEeecchHHHHHhhhhhhhhhhCcC-ceeEEEecccccCC
Confidence 33444555554 889999999999999988764 999999999999999999999998864 4544544 999999
Q ss_pred CCCCccceEEcccccc-----CcCC----HHHHHHHHHHhcCCCcEEEEEe
Q 017428 222 FPDGQFDLVWSMESGE-----HMPD----KSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 222 ~~~~~fD~v~~~~~l~-----~~~~----~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+++.++|.|++---.. .... ...+++.+.++|++||++++..
T Consensus 260 l~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~ 310 (347)
T COG1041 260 LRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAA 310 (347)
T ss_pred CCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEec
Confidence 9888899998732211 1111 3688999999999999999965
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.9e-08 Score=93.72 Aligned_cols=118 Identities=17% Similarity=0.157 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc
Q 017428 136 AAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVG 215 (371)
Q Consensus 136 ~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~ 215 (371)
.....++..+...+... ++.+|||+|||+|.++..++.. +..|+|+|+++.+++.|+++++.+++. +++|+.+
T Consensus 216 ~~~~~l~~~~~~~l~~~-----~~~~vLDL~cG~G~~~l~la~~-~~~v~~vE~~~~av~~a~~N~~~~~~~-~~~~~~~ 288 (374)
T TIGR02085 216 KVAAQLYATARQWVREI-----PVTQMWDLFCGVGGFGLHCAGP-DTQLTGIEIESEAIACAQQSAQMLGLD-NLSFAAL 288 (374)
T ss_pred HHHHHHHHHHHHHHHhc-----CCCEEEEccCCccHHHHHHhhc-CCeEEEEECCHHHHHHHHHHHHHcCCC-cEEEEEC
Confidence 33444444444444322 2579999999999999999976 689999999999999999999999884 8999999
Q ss_pred CCCCCC-CCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 216 DALQQP-FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 216 d~~~~~-~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
|+.+.. ....+||+|++.---.. -...+++.+. .++|++.+++..
T Consensus 289 d~~~~~~~~~~~~D~vi~DPPr~G--~~~~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 289 DSAKFATAQMSAPELVLVNPPRRG--IGKELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred CHHHHHHhcCCCCCEEEECCCCCC--CcHHHHHHHH-hcCCCeEEEEEe
Confidence 987642 11246999988633221 1245555554 479988888764
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.81 E-value=7.7e-08 Score=81.92 Aligned_cols=97 Identities=20% Similarity=0.225 Sum_probs=82.9
Q ss_pred EEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccCc
Q 017428 161 NVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHM 239 (371)
Q Consensus 161 ~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 239 (371)
+|+|||+|.|..++.++=.+ ..+++.+|....-+...+......++. |++++...+++ +....+||+|+++. +
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~-~~~~~~fd~v~aRA----v 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLS-NVEVINGRAEE-PEYRESFDVVTARA----V 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-S-SEEEEES-HHH-TTTTT-EEEEEEES----S
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCC-CEEEEEeeecc-cccCCCccEEEeeh----h
Confidence 89999999999999998877 679999999999999999999999994 89999999988 44468899999984 4
Q ss_pred CCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 240 PDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 240 ~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
.....++.-+...|++||.+++.-
T Consensus 125 ~~l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 125 APLDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp SSHHHHHHHHGGGEEEEEEEEEEE
T ss_pred cCHHHHHHHHHHhcCCCCEEEEEc
Confidence 577889999999999999999863
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.2e-08 Score=86.99 Aligned_cols=105 Identities=19% Similarity=0.295 Sum_probs=82.3
Q ss_pred CCEEEEECCCcCh----HHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHHH-----cCC-----------------
Q 017428 159 PKNVVDVGCGIGG----SSRYLAKKF------GAKCQGITLSPVQAQRANALAAA-----RGL----------------- 206 (371)
Q Consensus 159 ~~~VLDlG~GtG~----~~~~l~~~~------~~~v~gvD~s~~~~~~a~~~~~~-----~~~----------------- 206 (371)
..+|+-.||+||. .++.+.+.+ ..+|+|+|+|...++.|+.-.-. .++
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 6899999999998 455555554 25899999999999998753211 111
Q ss_pred ------CCCeEEEEcCCCCCCCCCCccceEEccccccCcCCH--HHHHHHHHHhcCCCcEEEEEe
Q 017428 207 ------ADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 207 ------~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~ 263 (371)
-..|.|...|+...++..+.||+|+|++++.++... .+++..++..|+|||+|++..
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 235778888887766345779999999999999654 789999999999999999964
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.1e-07 Score=81.80 Aligned_cols=104 Identities=9% Similarity=-0.070 Sum_probs=77.1
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C-C-CCC-ccceEEccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P-F-PDG-QFDLVWSME 234 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~-~~~-~fD~v~~~~ 234 (371)
+.+|||++||+|.+++.++.+....|+++|.++.+++.++++++..++..+++++.+|+.+. . + ... .||+|+..-
T Consensus 50 g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DP 129 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDP 129 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECc
Confidence 78999999999999999999843489999999999999999999988866899999998552 1 1 122 367776643
Q ss_pred cccCcCCHHHHHHHHH--HhcCCCcEEEEEe
Q 017428 235 SGEHMPDKSKFVSELA--RVTAPAGTIIIVT 263 (371)
Q Consensus 235 ~l~~~~~~~~~l~~~~--~~LkpgG~l~i~~ 263 (371)
-+. ......++..+. .+|+++|.+++-.
T Consensus 130 Py~-~~~~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 130 PFF-NGALQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred CCC-CCcHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 332 233445555443 3688888776654
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=98.80 E-value=8.1e-08 Score=81.89 Aligned_cols=115 Identities=25% Similarity=0.313 Sum_probs=83.8
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCE---------EEEEeCCHHHHHHHHHHHHHcCCCCCe
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAK---------CQGITLSPVQAQRANALAAARGLADKV 210 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~-~~~---------v~gvD~s~~~~~~a~~~~~~~~~~~~v 210 (371)
+...++.....++ +..|||--||+|.+.++.+... ... ++|+|+++.+++.|+++++..++...+
T Consensus 16 lA~~ll~la~~~~-----~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i 90 (179)
T PF01170_consen 16 LAAALLNLAGWRP-----GDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYI 90 (179)
T ss_dssp HHHHHHHHTT--T-----TS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGE
T ss_pred HHHHHHHHhCCCC-----CCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCce
Confidence 4455556665554 7899999999999999887765 444 889999999999999999999998889
Q ss_pred EEEEcCCCCCCCCCCccceEEccccccCc-CC-------HHHHHHHHHHhcCCCcEEEE
Q 017428 211 SFQVGDALQQPFPDGQFDLVWSMESGEHM-PD-------KSKFVSELARVTAPAGTIII 261 (371)
Q Consensus 211 ~~~~~d~~~~~~~~~~fD~v~~~~~l~~~-~~-------~~~~l~~~~~~LkpgG~l~i 261 (371)
.+.+.|+.++++.++++|+|+++--...- .. ...+++++.++|++ ..+++
T Consensus 91 ~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l 148 (179)
T PF01170_consen 91 DFIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFL 148 (179)
T ss_dssp EEEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEE
T ss_pred EEEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEE
Confidence 99999999998777899999997554432 11 14678888999999 33333
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1e-07 Score=85.78 Aligned_cols=102 Identities=25% Similarity=0.292 Sum_probs=80.7
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
.+..|||+|||+|.++...+.....+|++|+-|. |.++|++.++.+.+.++|.++.+.++++.+| ++.|+||+--+-.
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPMG~ 254 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPMGY 254 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEeccchh
Confidence 4788999999999999888887456899999865 9999999999999999999999999998876 7799998743222
Q ss_pred CcCC--HHHHHHHHHHhcCCCcEEEE
Q 017428 238 HMPD--KSKFVSELARVTAPAGTIII 261 (371)
Q Consensus 238 ~~~~--~~~~l~~~~~~LkpgG~l~i 261 (371)
-+-+ .-...-.+++.|||.|..+=
T Consensus 255 mL~NERMLEsYl~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 255 MLVNERMLESYLHARKWLKPNGKMFP 280 (517)
T ss_pred hhhhHHHHHHHHHHHhhcCCCCcccC
Confidence 2212 12333456799999998764
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.1e-08 Score=82.29 Aligned_cols=100 Identities=21% Similarity=0.291 Sum_probs=80.1
Q ss_pred CCCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCC---------CCCeEEEEcCCCCCCCCCC
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGL---------ADKVSFQVGDALQQPFPDG 225 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~---------~~~v~~~~~d~~~~~~~~~ 225 (371)
|+.+.||+|+|+|.++..++... +..++|||.-++.++.+++++...-- ..++.++++|.....-+..
T Consensus 82 pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~a 161 (237)
T KOG1661|consen 82 PGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQA 161 (237)
T ss_pred cCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCccC
Confidence 49999999999999999888766 33459999999999999998876531 2468899999988755678
Q ss_pred ccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 226 QFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 226 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+||.|++.... ...-+++...|+|||.+++--
T Consensus 162 ~YDaIhvGAaa------~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 162 PYDAIHVGAAA------SELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred CcceEEEccCc------cccHHHHHHhhccCCeEEEee
Confidence 99999987433 344567788899999999854
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=6.2e-08 Score=91.43 Aligned_cols=105 Identities=27% Similarity=0.285 Sum_probs=86.9
Q ss_pred CCEEEEECCCcChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEEEcCCCCC----CCCCCccceEEc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLA-DKVSFQVGDALQQ----PFPDGQFDLVWS 232 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~----~~~~~~fD~v~~ 232 (371)
+.+||++-|=||.++...+.. |+ +|+.||.|...+++|+++++-+|++ .++.|+++|+.+. .-...+||+|++
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~g-GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil 296 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALG-GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL 296 (393)
T ss_pred CCeEEEecccCcHHHHHHHhc-CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence 789999999999999999886 66 9999999999999999999999985 4589999998774 123458999997
Q ss_pred cc---------cccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 233 ME---------SGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 233 ~~---------~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
-- ......+...++..+.++|+|||.++++..
T Consensus 297 DPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~ 337 (393)
T COG1092 297 DPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSC 337 (393)
T ss_pred CCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 21 111224557889999999999999999874
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.7e-07 Score=84.70 Aligned_cols=84 Identities=27% Similarity=0.391 Sum_probs=66.8
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (371)
+++.+++.+...+ +.+|||+|||+|.++..+++. +..|+++|+++.+++.+++++.. .+++.++.+|+.+.
T Consensus 17 i~~~i~~~~~~~~-----~~~VLEiG~G~G~lt~~L~~~-~~~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~ 87 (253)
T TIGR00755 17 VIQKIVEAANVLE-----GDVVLEIGPGLGALTEPLLKR-AKKVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKV 87 (253)
T ss_pred HHHHHHHhcCCCC-----cCEEEEeCCCCCHHHHHHHHh-CCcEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcC
Confidence 5566677666554 789999999999999999998 46799999999999999887643 25899999999988
Q ss_pred CCCCCccc---eEEcccc
Q 017428 221 PFPDGQFD---LVWSMES 235 (371)
Q Consensus 221 ~~~~~~fD---~v~~~~~ 235 (371)
+++ .|| +|+++..
T Consensus 88 ~~~--~~d~~~~vvsNlP 103 (253)
T TIGR00755 88 DLP--DFPKQLKVVSNLP 103 (253)
T ss_pred Chh--HcCCcceEEEcCC
Confidence 754 466 6665543
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.4e-08 Score=86.73 Aligned_cols=145 Identities=14% Similarity=0.071 Sum_probs=92.9
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCC----------------C-----------CCe
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGL----------------A-----------DKV 210 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~----------------~-----------~~v 210 (371)
++.++||||||.-..-..-+...-.+|+..|+++...+..++.++..+. . ..|
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~V 135 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAV 135 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHE
T ss_pred CCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhh
Confidence 3779999999986553222222234799999999999877776655431 0 013
Q ss_pred -EEEEcCCCCCC-CCC-----CccceEEccccccCc-CCH---HHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChH
Q 017428 211 -SFQVGDALQQP-FPD-----GQFDLVWSMESGEHM-PDK---SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPW 279 (371)
Q Consensus 211 -~~~~~d~~~~~-~~~-----~~fD~v~~~~~l~~~-~~~---~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~ 279 (371)
.++..|+.+.+ +.. .+||+|++..+++.. +|. ..+++++.++|||||.|++.............
T Consensus 136 k~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~----- 210 (256)
T PF01234_consen 136 KQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGG----- 210 (256)
T ss_dssp EEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETT-----
T ss_pred ceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECC-----
Confidence 36678887753 322 359999999999877 344 68899999999999999998754322211100
Q ss_pred HHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEEE
Q 017428 280 EQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAE 317 (371)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~ 317 (371)
..+.. -..+.+.+++.|+++||.+++.+
T Consensus 211 ---------~~F~~-l~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 211 ---------HKFPC-LPLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp ---------EEEE----B-HHHHHHHHHHTTEEEEEEE
T ss_pred ---------Eeccc-ccCCHHHHHHHHHHcCCEEEecc
Confidence 00111 13589999999999999998887
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.71 E-value=5e-07 Score=79.31 Aligned_cols=111 Identities=18% Similarity=0.248 Sum_probs=93.2
Q ss_pred HHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 017428 142 IEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (371)
Q Consensus 142 ~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (371)
+..++..+.+.+ +.+|||-|+|+|.++..+++.. -.+++.+|+...-.+.|.+-++..++++++.+.+-|+..
T Consensus 94 ia~I~~~L~i~P-----GsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~ 168 (314)
T KOG2915|consen 94 IAMILSMLEIRP-----GSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCG 168 (314)
T ss_pred HHHHHHHhcCCC-----CCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeeccc
Confidence 345566666665 9999999999999999999987 358999999999999999999999999999999999988
Q ss_pred CCCC--CCccceEEccccccCcCCHHHHHHHHHHhcCCCc-EEEEE
Q 017428 220 QPFP--DGQFDLVWSMESGEHMPDKSKFVSELARVTAPAG-TIIIV 262 (371)
Q Consensus 220 ~~~~--~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG-~l~i~ 262 (371)
..|. ...+|+|+. -++.+..++-.++.+||.+| +++..
T Consensus 169 ~GF~~ks~~aDaVFL-----DlPaPw~AiPha~~~lk~~g~r~csF 209 (314)
T KOG2915|consen 169 SGFLIKSLKADAVFL-----DLPAPWEAIPHAAKILKDEGGRLCSF 209 (314)
T ss_pred CCccccccccceEEE-----cCCChhhhhhhhHHHhhhcCceEEec
Confidence 7643 577898876 45788888889999999887 44443
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.1e-07 Score=79.00 Aligned_cols=114 Identities=19% Similarity=0.300 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc
Q 017428 138 QVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVG 215 (371)
Q Consensus 138 ~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~ 215 (371)
...++..+++... +.++||||.=||..+..+|..+ +.+|+++|+++...+.+.+..+..|+...|.++++
T Consensus 61 ~g~fl~~li~~~~--------ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g 132 (237)
T KOG1663|consen 61 KGQFLQMLIRLLN--------AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEG 132 (237)
T ss_pred HHHHHHHHHHHhC--------CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeec
Confidence 3345666666554 7899999999999999999888 68999999999999999999999999999999999
Q ss_pred CCCCC------CCCCCccceEEccccccCc-CCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 216 DALQQ------PFPDGQFDLVWSMESGEHM-PDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 216 d~~~~------~~~~~~fD~v~~~~~l~~~-~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
++.+. ..+.++||+++.- |. .+....+.++.+++|+||.|++-.
T Consensus 133 ~a~esLd~l~~~~~~~tfDfaFvD----adK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 133 PALESLDELLADGESGTFDFAFVD----ADKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred chhhhHHHHHhcCCCCceeEEEEc----cchHHHHHHHHHHHhhcccccEEEEec
Confidence 98663 2356889999875 33 234578899999999999999865
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.8e-07 Score=92.45 Aligned_cols=126 Identities=14% Similarity=0.173 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHcCCCC--CCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEE
Q 017428 137 AQVRMIEETLRFAGVSE--DPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQ 213 (371)
Q Consensus 137 ~~~~~~~~~l~~~~~~~--~~~~~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~ 213 (371)
.+.+.++..+..+.+.. ........+||||||.|.++..+|..+ ...++|+|++..-+..+.++....++ .|+.++
T Consensus 324 ~q~~~~e~~~p~~~i~~eklf~~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l-~N~~~~ 402 (506)
T PRK01544 324 VQQNLLDNELPKYLFSKEKLVNEKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI-TNFLLF 402 (506)
T ss_pred HHHHHHHhhhhhhCCCHHHhCCCCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC-CeEEEE
Confidence 45555566555444432 112346789999999999999999998 68899999999999999888888887 589998
Q ss_pred EcCCCCC--CCCCCccceEEccccccCcCCH--------HHHHHHHHHhcCCCcEEEEEe
Q 017428 214 VGDALQQ--PFPDGQFDLVWSMESGEHMPDK--------SKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 214 ~~d~~~~--~~~~~~fD~v~~~~~l~~~~~~--------~~~l~~~~~~LkpgG~l~i~~ 263 (371)
..|+..+ -++++++|.|++++.=-+.... ..+++.+.++|||||.+.+.+
T Consensus 403 ~~~~~~~~~~~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 403 PNNLDLILNDLPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred cCCHHHHHHhcCcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 8887543 3678899999987654443211 579999999999999999975
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.69 E-value=1e-08 Score=97.57 Aligned_cols=99 Identities=24% Similarity=0.390 Sum_probs=70.9
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEE---eCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGI---TLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES 235 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gv---D~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~ 235 (371)
-..+||+|||+|.++..|.++ +..+..+ |..+.+++.|-+ .|+|.-+ -..--..+||+++.||+|+|..+
T Consensus 118 iR~~LDvGcG~aSF~a~l~~r-~V~t~s~a~~d~~~~qvqfale----RGvpa~~--~~~~s~rLPfp~~~fDmvHcsrc 190 (506)
T PF03141_consen 118 IRTALDVGCGVASFGAYLLER-NVTTMSFAPNDEHEAQVQFALE----RGVPAMI--GVLGSQRLPFPSNAFDMVHCSRC 190 (506)
T ss_pred eEEEEeccceeehhHHHHhhC-CceEEEcccccCCchhhhhhhh----cCcchhh--hhhccccccCCccchhhhhcccc
Confidence 357999999999999999887 4322222 444456666554 3554222 22234578999999999999988
Q ss_pred ccCcC-CHHHHHHHHHHhcCCCcEEEEEec
Q 017428 236 GEHMP-DKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 236 l~~~~-~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
+..+. +-.-+|-++.|+|+|||++++...
T Consensus 191 ~i~W~~~~g~~l~evdRvLRpGGyfv~S~p 220 (506)
T PF03141_consen 191 LIPWHPNDGFLLFEVDRVLRPGGYFVLSGP 220 (506)
T ss_pred cccchhcccceeehhhhhhccCceEEecCC
Confidence 87663 335678899999999999998753
|
; GO: 0008168 methyltransferase activity |
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=98.67 E-value=1e-07 Score=82.10 Aligned_cols=98 Identities=20% Similarity=0.219 Sum_probs=75.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l 236 (371)
++..|||+.||-|.+++.+++.. +..|+++|++|..++..+++++.+++..++....+|..+... .+.||.|++...-
T Consensus 101 ~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~lp~ 179 (200)
T PF02475_consen 101 PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNLPE 179 (200)
T ss_dssp TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE--TS
T ss_pred cceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECChH
Confidence 48999999999999999999844 678999999999999999999999999889999999988753 6889999886532
Q ss_pred cCcCCHHHHHHHHHHhcCCCcEEE
Q 017428 237 EHMPDKSKFVSELARVTAPAGTII 260 (371)
Q Consensus 237 ~~~~~~~~~l~~~~~~LkpgG~l~ 260 (371)
....++..+.+++++||++.
T Consensus 180 ----~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 180 ----SSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp ----SGGGGHHHHHHHEEEEEEEE
T ss_pred ----HHHHHHHHHHHHhcCCcEEE
Confidence 22357888999999998874
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.7e-06 Score=70.34 Aligned_cols=127 Identities=17% Similarity=0.264 Sum_probs=94.2
Q ss_pred CCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l 236 (371)
+..+||||||+|..+..+++.. +..+.++|++|.+++...+.+..++. ++..++.|+.+- +..++.|+++.+--.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~--~~~~V~tdl~~~-l~~~~VDvLvfNPPY 120 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV--HIDVVRTDLLSG-LRNESVDVLVFNPPY 120 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC--ccceeehhHHhh-hccCCccEEEECCCc
Confidence 6789999999999999999877 46789999999999999998888875 578888887663 234889988775322
Q ss_pred cCc-----------------CC----HHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCC
Q 017428 237 EHM-----------------PD----KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPA 295 (371)
Q Consensus 237 ~~~-----------------~~----~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (371)
.-- .+ .++++..+-..|.|.|++++.....
T Consensus 121 Vpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~----------------------------- 171 (209)
T KOG3191|consen 121 VPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRA----------------------------- 171 (209)
T ss_pred CcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhh-----------------------------
Confidence 111 11 2356667778888999998875211
Q ss_pred CCCHHHHHHHHHhCCCceEEEEe
Q 017428 296 WCSTADYVKLLQSLSLEDIKAED 318 (371)
Q Consensus 296 ~~~~~~~~~ll~~aGF~~v~~~~ 318 (371)
-.++++-++++.-||.......
T Consensus 172 -N~p~ei~k~l~~~g~~~~~~~~ 193 (209)
T KOG3191|consen 172 -NKPKEILKILEKKGYGVRIAMQ 193 (209)
T ss_pred -cCHHHHHHHHhhcccceeEEEE
Confidence 1467777888999988665543
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.6e-07 Score=87.60 Aligned_cols=103 Identities=16% Similarity=0.199 Sum_probs=79.4
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcC---CCCCeEEEEcCCCCC-CCCCCccceEEcc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARG---LADKVSFQVGDALQQ-PFPDGQFDLVWSM 233 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~-~~~~~~fD~v~~~ 233 (371)
+.+||.||+|.|..+..+++.. ..+|+.||+++.+++.|++.+...+ -.++++++.+|+... ....++||+|++-
T Consensus 104 pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~D 183 (336)
T PLN02823 104 PKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIGD 183 (336)
T ss_pred CCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEec
Confidence 6799999999999999988854 4689999999999999999875321 146899999998764 3335789999976
Q ss_pred ccccCc----CC---HHHHHH-HHHHhcCCCcEEEEE
Q 017428 234 ESGEHM----PD---KSKFVS-ELARVTAPAGTIIIV 262 (371)
Q Consensus 234 ~~l~~~----~~---~~~~l~-~~~~~LkpgG~l~i~ 262 (371)
.. ... .. -..+++ .+.+.|+|||++++.
T Consensus 184 ~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 184 LA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred CC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 31 111 00 246787 899999999998775
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.1e-07 Score=88.49 Aligned_cols=100 Identities=17% Similarity=0.120 Sum_probs=82.0
Q ss_pred CCEEEEECCCcChHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
+.+|||++||+|..++.++...+ ..|+++|+++..++.++++++.+++. ++.+...|+.......+.||+|++.- .
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~-~~~v~~~Da~~~l~~~~~fD~V~lDP-~- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE-NEKVFNKDANALLHEERKFDVVDIDP-F- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEhhhHHHHHhhcCCCCEEEECC-C-
Confidence 46899999999999999988764 48999999999999999999988874 67899999866421146799998853 2
Q ss_pred CcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 238 HMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 238 ~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
..+..++..+.+.+++||.++++-
T Consensus 135 --Gs~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 135 --GSPAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred --CCcHHHHHHHHHHhcCCCEEEEEe
Confidence 345678888788899999999973
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.1e-07 Score=83.78 Aligned_cols=148 Identities=15% Similarity=0.126 Sum_probs=85.2
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCe-EEEEcCCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKV-SFQVGDALQ 219 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v-~~~~~d~~~ 219 (371)
.+..++....+.. ++.+|||+|||||.++..+++....+|+++|+++.|+..... .. +++ .+...|+..
T Consensus 62 kL~~~l~~~~~~~----~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~---~~---~~v~~~~~~ni~~ 131 (228)
T TIGR00478 62 KLKEALEEFNIDV----KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLR---QD---ERVKVLERTNIRY 131 (228)
T ss_pred HHHHHHHhcCCCC----CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHh---cC---CCeeEeecCCccc
Confidence 3455555554422 478999999999999999998733589999999988876211 11 232 234444443
Q ss_pred CC-----CCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCC
Q 017428 220 QP-----FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLP 294 (371)
Q Consensus 220 ~~-----~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (371)
.. ..-..+|+++++..+ ++..+.+.|+| |.+++.- .+.+.-.. . ......-..
T Consensus 132 ~~~~~~~~d~~~~DvsfiS~~~--------~l~~i~~~l~~-~~~~~L~--KPqFE~~~--------~---~~~~~giv~ 189 (228)
T TIGR00478 132 VTPADIFPDFATFDVSFISLIS--------ILPELDLLLNP-NDLTLLF--KPQFEAGR--------E---KKNKKGVVR 189 (228)
T ss_pred CCHhHcCCCceeeeEEEeehHh--------HHHHHHHHhCc-CeEEEEc--ChHhhhcH--------h---hcCcCCeec
Confidence 21 111356766655432 47889999999 7766543 11110000 0 000000000
Q ss_pred ----CCCCHHHHHHHHHhCCCceEEEEecC
Q 017428 295 ----AWCSTADYVKLLQSLSLEDIKAEDWS 320 (371)
Q Consensus 295 ----~~~~~~~~~~ll~~aGF~~v~~~~~~ 320 (371)
.....+++...+.+.||....+....
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 219 (228)
T TIGR00478 190 DKEAIALALHKVIDKGESPDFQEKKIIFSL 219 (228)
T ss_pred CHHHHHHHHHHHHHHHHcCCCeEeeEEECC
Confidence 01134567778888999988776443
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.9e-07 Score=81.93 Aligned_cols=85 Identities=21% Similarity=0.291 Sum_probs=74.5
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (371)
.++.++...++++ +..|||+|.|||.++..+.+. +++|+++++++.|+...+++++........+++++|+...
T Consensus 46 v~~~I~~ka~~k~-----tD~VLEvGPGTGnLT~~lLe~-~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~ 119 (315)
T KOG0820|consen 46 VIDQIVEKADLKP-----TDVVLEVGPGTGNLTVKLLEA-GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKT 119 (315)
T ss_pred HHHHHHhccCCCC-----CCEEEEeCCCCCHHHHHHHHh-cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccC
Confidence 6778888888876 899999999999999999998 8999999999999999999997665558899999999887
Q ss_pred CCCCCccceEEcc
Q 017428 221 PFPDGQFDLVWSM 233 (371)
Q Consensus 221 ~~~~~~fD~v~~~ 233 (371)
++ -.||.++++
T Consensus 120 d~--P~fd~cVsN 130 (315)
T KOG0820|consen 120 DL--PRFDGCVSN 130 (315)
T ss_pred CC--cccceeecc
Confidence 64 368988874
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.6e-07 Score=83.55 Aligned_cols=145 Identities=20% Similarity=0.265 Sum_probs=87.2
Q ss_pred CEEEEECCC--cChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CC----CCccc-
Q 017428 160 KNVVDVGCG--IGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FP----DGQFD- 228 (371)
Q Consensus 160 ~~VLDlG~G--tG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~----~~~fD- 228 (371)
...|||||| |-.....+++.. .++|+.+|.+|..+..++..+....- ....++++|+.+.. +. .+-+|
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~~iL~~p~~~~~lD~ 148 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPEAILAHPEVRGLLDF 148 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HHHHHCSHHHHCC--T
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHHHHhcCHHHHhcCCC
Confidence 459999999 344566677666 78999999999999999998865431 23889999998842 11 12233
Q ss_pred ----eEEccccccCcC---CHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCC-CCCCHH
Q 017428 229 ----LVWSMESGEHMP---DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLP-AWCSTA 300 (371)
Q Consensus 229 ----~v~~~~~l~~~~---~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 300 (371)
.|++..++||++ ++..+++.++..|.||.+|.|+..+.+... .....+.........+ .+.+.+
T Consensus 149 ~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p--------~~~~~~~~~~~~~~~~~~~Rs~~ 220 (267)
T PF04672_consen 149 DRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAP--------ERAEALEAVYAQAGSPGRPRSRE 220 (267)
T ss_dssp TS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSH--------HHHHHHHHHHHHCCS----B-HH
T ss_pred CCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCH--------HHHHHHHHHHHcCCCCceecCHH
Confidence 577788999995 478999999999999999999987654321 1111122222222222 246899
Q ss_pred HHHHHHHhCCCceEE
Q 017428 301 DYVKLLQSLSLEDIK 315 (371)
Q Consensus 301 ~~~~ll~~aGF~~v~ 315 (371)
++..+|. ||+.++
T Consensus 221 ei~~~f~--g~elve 233 (267)
T PF04672_consen 221 EIAAFFD--GLELVE 233 (267)
T ss_dssp HHHHCCT--TSEE-T
T ss_pred HHHHHcC--CCccCC
Confidence 9999997 888664
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=98.64 E-value=5.4e-07 Score=87.68 Aligned_cols=107 Identities=17% Similarity=0.205 Sum_probs=85.5
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-CCCCccceEEc--
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-FPDGQFDLVWS-- 232 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~v~~-- 232 (371)
++.+|||+++|.|.-+..+++.+ ...|+++|+++.-+...++++++.|+ .|+.+...|...+. ...+.||.|++
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~-~nv~v~~~D~~~~~~~~~~~fD~ILvDa 191 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV-SNVALTHFDGRVFGAALPETFDAILLDA 191 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEeCchhhhhhhchhhcCeEEEcC
Confidence 58999999999999999999987 35899999999999999999999998 47888899987653 22467999994
Q ss_pred --cc--cccCcCCH----------------HHHHHHHHHhcCCCcEEEEEecc
Q 017428 233 --ME--SGEHMPDK----------------SKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 233 --~~--~l~~~~~~----------------~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
+. ++..-++. .++|.++.+.|||||.|+.++.+
T Consensus 192 PCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 192 PCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred CCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 21 22211111 47899999999999999887754
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.1e-07 Score=86.23 Aligned_cols=105 Identities=25% Similarity=0.290 Sum_probs=79.0
Q ss_pred CCEEEEECCCcChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEEEcCCCCC-C--CCCCccceEEcc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLA-DKVSFQVGDALQQ-P--FPDGQFDLVWSM 233 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~-~--~~~~~fD~v~~~ 233 (371)
+.+|||+-|=||.++...+.. |+ +|+.||.|...+++++++++-+++. .+++|+..|+.+. . -..++||+||+-
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlD 202 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILD 202 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE-
T ss_pred CCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEEC
Confidence 789999999999999987765 54 7999999999999999999999986 6899999998763 1 124689999973
Q ss_pred c------cccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 234 E------SGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 234 ~------~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
- ...-..+...++..+.++|+|||.|+++..
T Consensus 203 PPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 203 PPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp -SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 1 111113457889999999999999988763
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.9e-08 Score=86.45 Aligned_cols=100 Identities=25% Similarity=0.336 Sum_probs=82.0
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 238 (371)
+..++|+|||.|.....- ..+.++|.|++...+..+++. +.......|+.++|+++.+||.+++..++||
T Consensus 46 gsv~~d~gCGngky~~~~---p~~~~ig~D~c~~l~~~ak~~-------~~~~~~~ad~l~~p~~~~s~d~~lsiavihh 115 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLGVN---PLCLIIGCDLCTGLLGGAKRS-------GGDNVCRADALKLPFREESFDAALSIAVIHH 115 (293)
T ss_pred cceeeecccCCcccCcCC---CcceeeecchhhhhccccccC-------CCceeehhhhhcCCCCCCccccchhhhhhhh
Confidence 788999999999653221 246799999999998887652 1226788999999999999999999999999
Q ss_pred cCC---HHHHHHHHHHhcCCCcEEEEEeccCCC
Q 017428 239 MPD---KSKFVSELARVTAPAGTIIIVTWCHRD 268 (371)
Q Consensus 239 ~~~---~~~~l~~~~~~LkpgG~l~i~~~~~~~ 268 (371)
+.. ...+++++.|+|+|||..++..|....
T Consensus 116 lsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~~q 148 (293)
T KOG1331|consen 116 LSTRERRERALEELLRVLRPGGNALVYVWALEQ 148 (293)
T ss_pred hhhHHHHHHHHHHHHHHhcCCCceEEEEehhhc
Confidence 954 378999999999999999998876543
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.8e-06 Score=79.88 Aligned_cols=117 Identities=12% Similarity=0.104 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-----CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEE
Q 017428 138 QVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-----GAKCQGITLSPVQAQRANALAAARGLADKVSF 212 (371)
Q Consensus 138 ~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~-----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~ 212 (371)
..+....+...++ ++..|+|+|||.|.-+..|.+.+ ...++++|+|..+++.+.+++..... +.+.+
T Consensus 63 L~~~~~~Ia~~i~-------~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~-p~l~v 134 (319)
T TIGR03439 63 LKKHSSDIAASIP-------SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNF-SHVRC 134 (319)
T ss_pred HHHHHHHHHHhcC-------CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccC-CCeEE
Confidence 3444555555543 36789999999999887777655 36799999999999999999874444 34555
Q ss_pred --EEcCCCCC----CC--CCCccceEEcc-ccccCcCCH--HHHHHHHHH-hcCCCcEEEEE
Q 017428 213 --QVGDALQQ----PF--PDGQFDLVWSM-ESGEHMPDK--SKFVSELAR-VTAPAGTIIIV 262 (371)
Q Consensus 213 --~~~d~~~~----~~--~~~~fD~v~~~-~~l~~~~~~--~~~l~~~~~-~LkpgG~l~i~ 262 (371)
+.+|+.+. +- ......+|+.. .++.+++.. ..+++++++ .|+|||.++|.
T Consensus 135 ~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 135 AGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred EEEEecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence 78887653 11 12335666655 488888544 578999999 99999999885
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.4e-06 Score=81.09 Aligned_cols=115 Identities=17% Similarity=0.154 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc
Q 017428 136 AAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVG 215 (371)
Q Consensus 136 ~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~ 215 (371)
.....+++.+...+... +.+|||++||+|.+++.+++. ..+|+|+|.++.+++.|+++++.+++ .+++|+.+
T Consensus 190 ~~~e~l~~~v~~~~~~~------~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~-~~v~~~~~ 261 (362)
T PRK05031 190 AVNEKMLEWALDATKGS------KGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGI-DNVQIIRM 261 (362)
T ss_pred HHHHHHHHHHHHHhhcC------CCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEEEC
Confidence 34445555555554321 357999999999999998887 46899999999999999999999888 48999999
Q ss_pred CCCCC-C-CC--------------CCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 216 DALQQ-P-FP--------------DGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 216 d~~~~-~-~~--------------~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
|+.+. + +. ...||+|+..=--. .-...+++.+.+ |++.+++..
T Consensus 262 d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~--G~~~~~l~~l~~---~~~ivyvSC 320 (362)
T PRK05031 262 SAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRA--GLDDETLKLVQA---YERILYISC 320 (362)
T ss_pred CHHHHHHHHhhcccccccccccccCCCCCEEEECCCCC--CCcHHHHHHHHc---cCCEEEEEe
Confidence 98663 1 10 12589998743211 112344444443 677766653
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.1e-06 Score=70.19 Aligned_cols=96 Identities=21% Similarity=0.284 Sum_probs=70.1
Q ss_pred CCEEEEECCCcCh-HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC-CCccceEEccccc
Q 017428 159 PKNVVDVGCGIGG-SSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP-DGQFDLVWSMESG 236 (371)
Q Consensus 159 ~~~VLDlG~GtG~-~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~v~~~~~l 236 (371)
+.+|||||||+|. ++..|++. |..|+++|+++..++.+++. .+.++.+|+.+..+. -+.+|+|++...-
T Consensus 17 ~~kileIG~GfG~~vA~~L~~~-G~~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~p~~~~y~~a~liysirpp 87 (134)
T PRK04148 17 NKKIVELGIGFYFKVAKKLKES-GFDVIVIDINEKAVEKAKKL--------GLNAFVDDLFNPNLEIYKNAKLIYSIRPP 87 (134)
T ss_pred CCEEEEEEecCCHHHHHHHHHC-CCEEEEEECCHHHHHHHHHh--------CCeEEECcCCCCCHHHHhcCCEEEEeCCC
Confidence 6899999999996 88888865 89999999999998888764 378899999886532 3668999876422
Q ss_pred cCcCCHHHHHHHHHHhcCCCcEEEEEeccCCC
Q 017428 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHRD 268 (371)
Q Consensus 237 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 268 (371)
++....+.++.+. -|.-++|...+.+.
T Consensus 88 ---~el~~~~~~la~~--~~~~~~i~~l~~e~ 114 (134)
T PRK04148 88 ---RDLQPFILELAKK--INVPLIIKPLSGEE 114 (134)
T ss_pred ---HHHHHHHHHHHHH--cCCCEEEEcCCCCC
Confidence 3444455555543 35667777655443
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.5e-06 Score=75.40 Aligned_cols=132 Identities=17% Similarity=0.084 Sum_probs=103.2
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCc-cceEEccccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQ-FDLVWSMESG 236 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~~l 236 (371)
+.+++|||+|.|..++.++=.+ +.+|+-+|....-+...+......++ +|++++.+.+++..-. .. ||+|+++.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L-~nv~i~~~RaE~~~~~-~~~~D~vtsRA-- 143 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGL-ENVEIVHGRAEEFGQE-KKQYDVVTSRA-- 143 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCC-CCeEEehhhHhhcccc-cccCcEEEeeh--
Confidence 5899999999999999988544 67799999999999999999999998 5899999999987521 23 99999984
Q ss_pred cCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEE
Q 017428 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKA 316 (371)
Q Consensus 237 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~ 316 (371)
+.+...++.-+..++|+||.+++.-+. .. ---..+.+......||.++.+
T Consensus 144 --va~L~~l~e~~~pllk~~g~~~~~k~~----------------~~------------~~e~~e~~~a~~~~~~~~~~~ 193 (215)
T COG0357 144 --VASLNVLLELCLPLLKVGGGFLAYKGL----------------AG------------KDELPEAEKAILPLGGQVEKV 193 (215)
T ss_pred --ccchHHHHHHHHHhcccCCcchhhhHH----------------hh------------hhhHHHHHHHHHhhcCcEEEE
Confidence 456677888899999999987753210 00 012445667788889998888
Q ss_pred EecCCccc
Q 017428 317 EDWSQNVA 324 (371)
Q Consensus 317 ~~~~~~~~ 324 (371)
.....+..
T Consensus 194 ~~~~~p~~ 201 (215)
T COG0357 194 FSLTVPEL 201 (215)
T ss_pred EEeecCCC
Confidence 87777654
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.1e-06 Score=83.09 Aligned_cols=113 Identities=17% Similarity=0.171 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC
Q 017428 138 QVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA 217 (371)
Q Consensus 138 ~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~ 217 (371)
...+++.+++.+... +.+|||++||+|.+++.+++.. .+|+|+|+++.+++.|+++++.+++ .+++|+.+|+
T Consensus 183 ~~~l~~~v~~~~~~~------~~~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~a~~n~~~~~~-~~v~~~~~d~ 254 (353)
T TIGR02143 183 NIKMLEWACEVTQGS------KGDLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNAAQYNIAANNI-DNVQIIRMSA 254 (353)
T ss_pred HHHHHHHHHHHhhcC------CCcEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEEcCH
Confidence 344555555554321 3479999999999999998874 6899999999999999999999888 4799999998
Q ss_pred CCCC--------C---C-----CCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 218 LQQP--------F---P-----DGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 218 ~~~~--------~---~-----~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
.+.. + . ...||+|+..=- . -.-...+++.+. +|++.+++..
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPP-R-~G~~~~~l~~l~---~~~~ivYvsC 311 (353)
T TIGR02143 255 EEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPP-R-AGLDPDTCKLVQ---AYERILYISC 311 (353)
T ss_pred HHHHHHHhhccccccccccccccCCCCEEEECCC-C-CCCcHHHHHHHH---cCCcEEEEEc
Confidence 7631 0 0 013798887422 0 111234444443 4777777753
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.8e-06 Score=78.67 Aligned_cols=104 Identities=21% Similarity=0.240 Sum_probs=71.0
Q ss_pred CCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l 236 (371)
+.+|||+|||+|..+..+.+.+ -.+++++|.|+.|++.++..+..........+. .+......+-...|+|++.++|
T Consensus 34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~DLvi~s~~L 112 (274)
T PF09243_consen 34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWR-RVLYRDFLPFPPDDLVIASYVL 112 (274)
T ss_pred CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhh-hhhhcccccCCCCcEEEEehhh
Confidence 6899999999998776666654 357999999999999999877654211111111 1111111112334999999999
Q ss_pred cCcCC--HHHHHHHHHHhcCCCcEEEEEecc
Q 017428 237 EHMPD--KSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 237 ~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
..+++ ...+++.+.+.+.+ .|+++|..
T Consensus 113 ~EL~~~~r~~lv~~LW~~~~~--~LVlVEpG 141 (274)
T PF09243_consen 113 NELPSAARAELVRSLWNKTAP--VLVLVEPG 141 (274)
T ss_pred hcCCchHHHHHHHHHHHhccC--cEEEEcCC
Confidence 99976 35677777776665 88888854
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.2e-06 Score=78.01 Aligned_cols=90 Identities=24% Similarity=0.303 Sum_probs=73.7
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (371)
.++.+++.+.+.+ +..|||||+|.|.++..|+++ +..|+++++++.+++..++... ..+|++++.+|+...
T Consensus 18 v~~kIv~~a~~~~-----~d~VlEIGpG~GaLT~~Ll~~-~~~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~DaLk~ 88 (259)
T COG0030 18 VIDKIVEAANISP-----GDNVLEIGPGLGALTEPLLER-AARVTAIEIDRRLAEVLKERFA---PYDNLTVINGDALKF 88 (259)
T ss_pred HHHHHHHhcCCCC-----CCeEEEECCCCCHHHHHHHhh-cCeEEEEEeCHHHHHHHHHhcc---cccceEEEeCchhcC
Confidence 5778888877664 899999999999999999998 7789999999999999988865 236899999999998
Q ss_pred CCCCC-ccceEEccccccCcC
Q 017428 221 PFPDG-QFDLVWSMESGEHMP 240 (371)
Q Consensus 221 ~~~~~-~fD~v~~~~~l~~~~ 240 (371)
+++.- .++.|+++.- +++.
T Consensus 89 d~~~l~~~~~vVaNlP-Y~Is 108 (259)
T COG0030 89 DFPSLAQPYKVVANLP-YNIS 108 (259)
T ss_pred cchhhcCCCEEEEcCC-Cccc
Confidence 87642 5778876543 3443
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.5e-06 Score=78.92 Aligned_cols=105 Identities=18% Similarity=0.262 Sum_probs=82.8
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcC--C-CCCeEEEEcCCCCCC-CCCCccceEEcc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARG--L-ADKVSFQVGDALQQP-FPDGQFDLVWSM 233 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~~~-~~~~~fD~v~~~ 233 (371)
+.+||-||.|.|.++..+++.. -.+++.||+++..++.+++.+.... . +++++++..|..+.- -..++||+|++.
T Consensus 77 pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D 156 (282)
T COG0421 77 PKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVD 156 (282)
T ss_pred CCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEc
Confidence 3699999999999999999976 4789999999999999999876542 2 378999999987642 122489999975
Q ss_pred ccccCcC----CHHHHHHHHHHhcCCCcEEEEEe
Q 017428 234 ESGEHMP----DKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 234 ~~l~~~~----~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
..=.--+ .-..+++.+++.|+++|+++...
T Consensus 157 ~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 157 STDPVGPAEALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred CCCCCCcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence 4332101 12789999999999999999973
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.3e-07 Score=82.31 Aligned_cols=97 Identities=16% Similarity=0.219 Sum_probs=75.8
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (371)
+++++++.+...+ +..+||.+||.|..+..+++.++ .+|+|+|.++.+++.|++++.. .+++.++++|+.
T Consensus 7 ll~Evl~~L~~~p-----g~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~ 78 (296)
T PRK00050 7 LLDEVVDALAIKP-----DGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFS 78 (296)
T ss_pred cHHHHHHhhCCCC-----CCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHH
Confidence 5677777776554 78999999999999999999873 7999999999999999998755 368999999998
Q ss_pred CCC--CCC--CccceEEcccccc--CcCCHHHH
Q 017428 219 QQP--FPD--GQFDLVWSMESGE--HMPDKSKF 245 (371)
Q Consensus 219 ~~~--~~~--~~fD~v~~~~~l~--~~~~~~~~ 245 (371)
++. .+. .++|.|++...+. ++.+..+-
T Consensus 79 ~l~~~l~~~~~~vDgIl~DLGvSs~Qld~~~RG 111 (296)
T PRK00050 79 NLKEVLAEGLGKVDGILLDLGVSSPQLDDAERG 111 (296)
T ss_pred HHHHHHHcCCCccCEEEECCCccccccCCCcCC
Confidence 753 222 2799999876543 34454443
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=98.44 E-value=7.2e-07 Score=76.15 Aligned_cols=105 Identities=18% Similarity=0.129 Sum_probs=78.5
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C---CCCCccceEEccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P---FPDGQFDLVWSME 234 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~---~~~~~fD~v~~~~ 234 (371)
+.+|||+-||+|.++++.+.+....|+.||.++..+...+++++..+..+++.++..|+... . ....+||+|++.-
T Consensus 43 g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDP 122 (183)
T PF03602_consen 43 GARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDP 122 (183)
T ss_dssp T-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--
T ss_pred CCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECC
Confidence 89999999999999999988844689999999999999999999998877799999996542 1 2468899998763
Q ss_pred cccCcCC-HHHHHHHHH--HhcCCCcEEEEEec
Q 017428 235 SGEHMPD-KSKFVSELA--RVTAPAGTIIIVTW 264 (371)
Q Consensus 235 ~l~~~~~-~~~~l~~~~--~~LkpgG~l~i~~~ 264 (371)
-.. ... ...++..+. .+|+++|.+++-..
T Consensus 123 PY~-~~~~~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 123 PYA-KGLYYEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp STT-SCHHHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred Ccc-cchHHHHHHHHHHHCCCCCCCEEEEEEec
Confidence 332 233 367777776 78999998888653
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=5.5e-06 Score=68.32 Aligned_cols=104 Identities=38% Similarity=0.539 Sum_probs=75.7
Q ss_pred EEEECCCcChHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC--CCCCC-CccceEEccccc
Q 017428 162 VVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ--QPFPD-GQFDLVWSMESG 236 (371)
Q Consensus 162 VLDlG~GtG~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~-~~fD~v~~~~~l 236 (371)
++|+|||+|... .+..... ..++|+|+++.++..++......+. ..+.+...|... .++.. ..||++ .....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~ 128 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGL-GLVDFVVADALGGVLPFEDSASFDLV-ISLLV 128 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCC-CceEEEEeccccCCCCCCCCCceeEE-eeeee
Confidence 999999999977 3333322 4899999999999985554432111 116788888776 67666 489999 55544
Q ss_pred cCcCCHHHHHHHHHHhcCCCcEEEEEeccCCC
Q 017428 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHRD 268 (371)
Q Consensus 237 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 268 (371)
.+..+....+.++.+.|+|+|.+++.......
T Consensus 129 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 129 LHLLPPAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred hhcCCHHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 44444888999999999999999998865443
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.4e-06 Score=78.15 Aligned_cols=105 Identities=20% Similarity=0.288 Sum_probs=78.5
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCC---CCCeEEEEcCCCCC-CCCCC-ccceEEc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGL---ADKVSFQVGDALQQ-PFPDG-QFDLVWS 232 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~---~~~v~~~~~d~~~~-~~~~~-~fD~v~~ 232 (371)
+.+||=||.|.|..+..+.+.. ..+|+.||+++..++.|++.+..... .++++++..|.... .-..+ +||+|+.
T Consensus 77 p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi~ 156 (246)
T PF01564_consen 77 PKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVIIV 156 (246)
T ss_dssp T-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEEE
T ss_pred cCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEEE
Confidence 7899999999999999998764 46899999999999999998765322 36899999998653 11224 8999987
Q ss_pred cccccCcCC----HHHHHHHHHHhcCCCcEEEEEe
Q 017428 233 MESGEHMPD----KSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 233 ~~~l~~~~~----~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
-..-...+. -..+++.+.+.|+|||.+++..
T Consensus 157 D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 157 DLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp ESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred eCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 433211111 2689999999999999999865
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.8e-07 Score=78.68 Aligned_cols=145 Identities=20% Similarity=0.254 Sum_probs=92.2
Q ss_pred CCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccc
Q 017428 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (371)
Q Consensus 157 ~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l 236 (371)
..+.++||+|+|.|..+..++..+ .+|++.++|..|....+++ +. || +-..+..+ .+-+||+|.|.+.+
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~f-eevyATElS~tMr~rL~kk----~y--nV-l~~~ew~~---t~~k~dli~clNlL 179 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPTF-EEVYATELSWTMRDRLKKK----NY--NV-LTEIEWLQ---TDVKLDLILCLNLL 179 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcchH-HHHHHHHhhHHHHHHHhhc----CC--ce-eeehhhhh---cCceeehHHHHHHH
Confidence 346899999999999999999876 3699999999998876652 21 22 11222222 24569999999998
Q ss_pred cCcCCHHHHHHHHHHhcCC-CcEEEEEecc-CCCCCc-CccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCce
Q 017428 237 EHMPDKSKFVSELARVTAP-AGTIIIVTWC-HRDLAP-SEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLED 313 (371)
Q Consensus 237 ~~~~~~~~~l~~~~~~Lkp-gG~l~i~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~ 313 (371)
.---++-.+++.++.+|+| +|++++.-.- ...+.. ...........++...+..+. -....+.++|+++||.+
T Consensus 180 DRc~~p~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~rPdn~Le~~Gr~~e----e~v~~~~e~lr~~g~~v 255 (288)
T KOG3987|consen 180 DRCFDPFKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPLRPDNLLENNGRSFE----EEVARFMELLRNCGYRV 255 (288)
T ss_pred HhhcChHHHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCcCCchHHHHhcCccHH----HHHHHHHHHHHhcCchh
Confidence 7777889999999999999 8998885421 111111 001111111122222111110 12345778999999987
Q ss_pred EEE
Q 017428 314 IKA 316 (371)
Q Consensus 314 v~~ 316 (371)
...
T Consensus 256 eaw 258 (288)
T KOG3987|consen 256 EAW 258 (288)
T ss_pred hhh
Confidence 543
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.9e-06 Score=75.32 Aligned_cols=96 Identities=14% Similarity=0.052 Sum_probs=74.8
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc---CCCCCeEEEEcCCCCCCCCCCccceEEcccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR---GLADKVSFQVGDALQQPFPDGQFDLVWSMES 235 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~---~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~ 235 (371)
+.+||=||.|.|..+.++++. ..+|+.||+++.+++.+++.+... --.++++++.. +.+ ...++||+|++-..
T Consensus 73 pk~VLIiGGGDGg~~REvLkh-~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~--~~~~~fDVIIvDs~ 148 (262)
T PRK00536 73 LKEVLIVDGFDLELAHQLFKY-DTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD--LDIKKYDLIICLQE 148 (262)
T ss_pred CCeEEEEcCCchHHHHHHHCc-CCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh--ccCCcCCEEEEcCC
Confidence 799999999999999999986 569999999999999999954432 12357777652 221 12378999997642
Q ss_pred ccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 236 GEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 236 l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
....+++.+++.|+|||.++...
T Consensus 149 -----~~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 149 -----PDIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred -----CChHHHHHHHHhcCCCcEEEECC
Confidence 33678899999999999999864
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.4e-06 Score=79.15 Aligned_cols=106 Identities=19% Similarity=0.159 Sum_probs=90.5
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
++.+|||.=+|-|.+++.+|......|+++|++|..++..+++++.+++.+.+..+++|.......-+.||.|++...
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p-- 265 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP-- 265 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC--
Confidence 389999999999999999999743349999999999999999999999987799999999887644488999998743
Q ss_pred CcCCHHHHHHHHHHhcCCCcEEEEEeccCC
Q 017428 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHR 267 (371)
Q Consensus 238 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 267 (371)
.+...++..+.+.+++||.+-+.++...
T Consensus 266 --~~a~~fl~~A~~~~k~~g~iHyy~~~~e 293 (341)
T COG2520 266 --KSAHEFLPLALELLKDGGIIHYYEFVPE 293 (341)
T ss_pred --CcchhhHHHHHHHhhcCcEEEEEeccch
Confidence 3446788889999999999999886544
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.6e-07 Score=72.50 Aligned_cols=79 Identities=19% Similarity=0.213 Sum_probs=65.7
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
.+++++|+|||.|.+....+---...|+|+|++++.++.+++++....+ ++.+.++|+.++.+..+.||.++.+--+.
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv--qidlLqcdildle~~~g~fDtaviNppFG 125 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV--QIDLLQCDILDLELKGGIFDTAVINPPFG 125 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh--hhheeeeeccchhccCCeEeeEEecCCCC
Confidence 3789999999999998554432156799999999999999999988775 67899999999877779999999887665
Q ss_pred C
Q 017428 238 H 238 (371)
Q Consensus 238 ~ 238 (371)
.
T Consensus 126 T 126 (185)
T KOG3420|consen 126 T 126 (185)
T ss_pred c
Confidence 4
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.7e-06 Score=75.03 Aligned_cols=116 Identities=25% Similarity=0.304 Sum_probs=72.4
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHH-------HcCC-CCCe
Q 017428 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAK-CQGITLSPVQAQRANALAA-------ARGL-ADKV 210 (371)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~-v~gvD~s~~~~~~a~~~~~-------~~~~-~~~v 210 (371)
..+..+++.+.+.+ +...+|||||.|......+-..+++ .+||++.+...+.|+...+ ..|. ...+
T Consensus 29 ~~~~~il~~~~l~~-----~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v 103 (205)
T PF08123_consen 29 EFVSKILDELNLTP-----DDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKV 103 (205)
T ss_dssp HHHHHHHHHTT--T-----T-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EE
T ss_pred HHHHHHHHHhCCCC-----CCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 35666777777665 8899999999999988888766654 9999999998887765432 2232 3468
Q ss_pred EEEEcCCCCCCCC---CCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEE
Q 017428 211 SFQVGDALQQPFP---DGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIII 261 (371)
Q Consensus 211 ~~~~~d~~~~~~~---~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i 261 (371)
.+..+|+.+.++. -...|+|++++.+.. ++....+.+....||+|-+++-
T Consensus 104 ~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~F~-~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 104 ELIHGDFLDPDFVKDIWSDADVVFVNNTCFD-PDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp EEECS-TTTHHHHHHHGHC-SEEEE--TTT--HHHHHHHHHHHTTS-TT-EEEE
T ss_pred eeeccCccccHhHhhhhcCCCEEEEeccccC-HHHHHHHHHHHhcCCCCCEEEE
Confidence 8889998775321 134699999876532 3455666778888999877764
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.34 E-value=9e-06 Score=78.39 Aligned_cols=119 Identities=25% Similarity=0.353 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE
Q 017428 135 RAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQV 214 (371)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~ 214 (371)
......++...++++...+ +.+|||+=||.|.+++.++++ ..+|+|+|+++++++.|+++++.+++. |+.|..
T Consensus 275 ~~~~ekl~~~a~~~~~~~~-----~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~i~-N~~f~~ 347 (432)
T COG2265 275 PAVAEKLYETALEWLELAG-----GERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAANGID-NVEFIA 347 (432)
T ss_pred HHHHHHHHHHHHHHHhhcC-----CCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEe
Confidence 3455667777777776544 789999999999999999976 679999999999999999999999995 599999
Q ss_pred cCCCCCCC---CCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 215 GDALQQPF---PDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 215 ~d~~~~~~---~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+++++... ....+|.|+..--=... ...+++.+.+ ++|-.+++++-
T Consensus 348 ~~ae~~~~~~~~~~~~d~VvvDPPR~G~--~~~~lk~l~~-~~p~~IvYVSC 396 (432)
T COG2265 348 GDAEEFTPAWWEGYKPDVVVVDPPRAGA--DREVLKQLAK-LKPKRIVYVSC 396 (432)
T ss_pred CCHHHHhhhccccCCCCEEEECCCCCCC--CHHHHHHHHh-cCCCcEEEEeC
Confidence 99988632 23578999863110000 1245555554 67878888753
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=98.33 E-value=8.1e-06 Score=70.83 Aligned_cols=124 Identities=20% Similarity=0.238 Sum_probs=89.4
Q ss_pred EEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccCcC
Q 017428 162 VVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMP 240 (371)
Q Consensus 162 VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 240 (371)
|.||||--|.+.+.|.+.. -..++++|+++.-++.|++.++..++.+++++..+|..+.--+.+..|.|+..++=..
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG~-- 78 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGGE-- 78 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-HH--
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCCHH--
Confidence 6899999999999999985 2479999999999999999999999999999999996552112233798887655432
Q ss_pred CHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEEEec
Q 017428 241 DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDW 319 (371)
Q Consensus 241 ~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~ 319 (371)
-...++.+....++....+++.- ......++++|.+.||.+++..-.
T Consensus 79 lI~~ILe~~~~~~~~~~~lILqP--------------------------------~~~~~~LR~~L~~~gf~I~~E~lv 125 (205)
T PF04816_consen 79 LIIEILEAGPEKLSSAKRLILQP--------------------------------NTHAYELRRWLYENGFEIIDEDLV 125 (205)
T ss_dssp HHHHHHHHTGGGGTT--EEEEEE--------------------------------SS-HHHHHHHHHHTTEEEEEEEEE
T ss_pred HHHHHHHhhHHHhccCCeEEEeC--------------------------------CCChHHHHHHHHHCCCEEEEeEEE
Confidence 34667777777777666777753 124677899999999998886544
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=98.32 E-value=8.3e-07 Score=73.59 Aligned_cols=72 Identities=28% Similarity=0.503 Sum_probs=55.8
Q ss_pred EEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCc-cceEEcc
Q 017428 161 NVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQ-FDLVWSM 233 (371)
Q Consensus 161 ~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~-fD~v~~~ 233 (371)
.|+|+.||.|+.++.+|+. ..+|++||+++..++.|+.+++..|+.++|.++.+|+.+.. +.... ||+|++.
T Consensus 2 ~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 6999999999999999997 56899999999999999999999999899999999987752 22222 8999874
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.2e-05 Score=72.49 Aligned_cols=104 Identities=27% Similarity=0.422 Sum_probs=67.4
Q ss_pred CCEEEEECCCcCh-HHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHH-HcCCCCCeEEEEcCCCCCCCCCCccceEEccc
Q 017428 159 PKNVVDVGCGIGG-SSRYLAKKF--GAKCQGITLSPVQAQRANALAA-ARGLADKVSFQVGDALQQPFPDGQFDLVWSME 234 (371)
Q Consensus 159 ~~~VLDlG~GtG~-~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~ 234 (371)
+.+|+=||||.=- .++.+++.+ ++.|+++|+++...+.+++.++ ..++..++.|+.+|..+.+..-..||+|+...
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 5699999999754 455666655 5789999999999999999887 55677889999999877654446899998776
Q ss_pred ccc-CcCCHHHHHHHHHHhcCCCcEEEEE
Q 017428 235 SGE-HMPDKSKFVSELARVTAPAGTIIIV 262 (371)
Q Consensus 235 ~l~-~~~~~~~~l~~~~~~LkpgG~l~i~ 262 (371)
... .-.+..+++.++.+.++||..+++-
T Consensus 201 lVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 201 LVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp T-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 554 2247899999999999999988885
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.31 E-value=5.1e-06 Score=71.11 Aligned_cols=109 Identities=24% Similarity=0.267 Sum_probs=77.5
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (371)
.+.++.++..+- .++..|+|||+-.|.|+..+++..+ ..|+|+|+.|.- ..++|.++++|++
T Consensus 32 KL~el~~k~~i~----~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~------------~~~~V~~iq~d~~ 95 (205)
T COG0293 32 KLLELNEKFKLF----KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK------------PIPGVIFLQGDIT 95 (205)
T ss_pred HHHHHHHhcCee----cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc------------cCCCceEEeeecc
Confidence 344455544332 2589999999999999999999874 349999998842 2357999999998
Q ss_pred CCC--------CCCCccceEEccccc--------cCcCC---HHHHHHHHHHhcCCCcEEEEEecc
Q 017428 219 QQP--------FPDGQFDLVWSMESG--------EHMPD---KSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 219 ~~~--------~~~~~fD~v~~~~~l--------~~~~~---~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
..+ +....+|+|++-..- .|... ...++.-+..+|+|||.+++-.+-
T Consensus 96 ~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fq 161 (205)
T COG0293 96 DEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQ 161 (205)
T ss_pred CccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEe
Confidence 864 344557999864322 12111 145677778899999999997753
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.1e-05 Score=83.06 Aligned_cols=121 Identities=21% Similarity=0.199 Sum_probs=87.6
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--------------------------------------
Q 017428 139 VRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-------------------------------------- 180 (371)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~-------------------------------------- 180 (371)
..+...++....... ++..++|..||+|.+.++.+...
T Consensus 175 etlAaa~l~~a~w~~----~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~ 250 (702)
T PRK11783 175 ENLAAAILLRSGWPQ----EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARA 250 (702)
T ss_pred HHHHHHHHHHcCCCC----CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhh
Confidence 345566666665521 36899999999999998876521
Q ss_pred -----CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC--CCccceEEccccccC-cC---CHHHHHHHH
Q 017428 181 -----GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP--DGQFDLVWSMESGEH-MP---DKSKFVSEL 249 (371)
Q Consensus 181 -----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~fD~v~~~~~l~~-~~---~~~~~l~~~ 249 (371)
..+++|+|+++.+++.|++++...|+.+.+.+.++|+.+++.+ .++||+|+++--... +. +...++..+
T Consensus 251 ~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~l 330 (702)
T PRK11783 251 GLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQL 330 (702)
T ss_pred cccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHH
Confidence 1269999999999999999999999988899999999887543 357999999844322 11 223444444
Q ss_pred HHhc---CCCcEEEEEe
Q 017428 250 ARVT---APAGTIIIVT 263 (371)
Q Consensus 250 ~~~L---kpgG~l~i~~ 263 (371)
.+.| .+|+.+++..
T Consensus 331 g~~lk~~~~g~~~~llt 347 (702)
T PRK11783 331 GRRLKQQFGGWNAALFS 347 (702)
T ss_pred HHHHHHhCCCCeEEEEe
Confidence 4444 4888887765
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.9e-05 Score=66.63 Aligned_cols=106 Identities=18% Similarity=0.122 Sum_probs=82.2
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--CCC-CCccceEEccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--PFP-DGQFDLVWSME 234 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~-~~~fD~v~~~~ 234 (371)
.+.++||+=+|+|.++.+.+.+....++.||.+.......+++++..+...++.++..|+... ... .++||+|++--
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDP 122 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDP 122 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCC
Confidence 489999999999999999999865789999999999999999999988778999999998743 112 23599999865
Q ss_pred ccc-CcCCHHHHHHH--HHHhcCCCcEEEEEe
Q 017428 235 SGE-HMPDKSKFVSE--LARVTAPAGTIIIVT 263 (371)
Q Consensus 235 ~l~-~~~~~~~~l~~--~~~~LkpgG~l~i~~ 263 (371)
-++ .+-+....+.. -..+|+|+|.+++-.
T Consensus 123 Py~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~ 154 (187)
T COG0742 123 PYAKGLLDKELALLLLEENGWLKPGALIVVEH 154 (187)
T ss_pred CCccchhhHHHHHHHHHhcCCcCCCcEEEEEe
Confidence 444 11222333333 457899999999865
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.4e-05 Score=75.68 Aligned_cols=100 Identities=13% Similarity=0.166 Sum_probs=82.7
Q ss_pred CCEEEEECCCcChHHHHHHHHc-C-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-CCCCccceEEcccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-G-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-FPDGQFDLVWSMES 235 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~v~~~~~ 235 (371)
+.+|||+.||+|..++.++.+. + ..|+++|+++..++.++++++.+++. ++.+...|+...- .....||+|...-
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l~~~~~~fDvIdlDP- 122 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVLRYRNRKFHVIDIDP- 122 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHHHHhCCCCCEEEeCC-
Confidence 3689999999999999999874 3 58999999999999999999988773 7889999987652 1236799998753
Q ss_pred ccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 236 GEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 236 l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+ ..+..++..+.+.+++||.|+++-
T Consensus 123 f---Gs~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 123 F---GTPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred C---CCcHHHHHHHHHhcccCCEEEEEe
Confidence 2 345678999999999999999974
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.8e-05 Score=73.54 Aligned_cols=109 Identities=22% Similarity=0.321 Sum_probs=84.6
Q ss_pred CCCCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CC-CCccceE
Q 017428 157 KRPKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FP-DGQFDLV 230 (371)
Q Consensus 157 ~~~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~-~~~fD~v 230 (371)
.++.+|||+.++.|+=+..+++.. +..|+++|.++.-+...++++++.|+. |+.....|....+ .+ .+.||.|
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~-nv~~~~~d~~~~~~~~~~~~~fD~i 233 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR-NVIVVNKDARRLAELLPGGEKFDRI 233 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC-ceEEEecccccccccccccCcCcEE
Confidence 358999999999999999999876 345799999999999999999999985 5888888876543 22 2359999
Q ss_pred Ecc------ccccCcCC----------------HHHHHHHHHHhcCCCcEEEEEeccC
Q 017428 231 WSM------ESGEHMPD----------------KSKFVSELARVTAPAGTIIIVTWCH 266 (371)
Q Consensus 231 ~~~------~~l~~~~~----------------~~~~l~~~~~~LkpgG~l~i~~~~~ 266 (371)
++- +++.--++ ..++|..+.++|||||.|+.++.+.
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~ 291 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSL 291 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence 862 22211121 1378999999999999999988643
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.21 E-value=8.8e-05 Score=66.71 Aligned_cols=175 Identities=16% Similarity=0.134 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCC-------
Q 017428 135 RAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLA------- 207 (371)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~------- 207 (371)
......+++++-...+... ....+.+||--|||.|.++..++.. |..+-|-++|--|+-...=.+..-..+
T Consensus 128 d~~ykpii~~l~~lfp~~~-~~r~ki~iLvPGaGlGRLa~dla~~-G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYP 205 (369)
T KOG2798|consen 128 DQLYKPIIEELNSLFPSRG-KERTKIRILVPGAGLGRLAYDLACL-GFKCQGNEFSYFMLICSSFILNYCKQENQFTIYP 205 (369)
T ss_pred hhhhhhHHHHHHhhCCCcc-ccccCceEEecCCCchhHHHHHHHh-cccccccHHHHHHHHHHHHHHHhhccCCcEEEEe
Confidence 3444556666655554322 2234678999999999999999987 667777788777764332222110000
Q ss_pred --------------------------------CCeEEEEcCCCCC-C--CCCCccceEEccccccCcCCHHHHHHHHHHh
Q 017428 208 --------------------------------DKVSFQVGDALQQ-P--FPDGQFDLVWSMESGEHMPDKSKFVSELARV 252 (371)
Q Consensus 208 --------------------------------~~v~~~~~d~~~~-~--~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~ 252 (371)
.+.+...+|+.+. + -..+.||+|+.++.+-...+.-..++.+..+
T Consensus 206 fIh~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~i 285 (369)
T KOG2798|consen 206 FIHQYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKI 285 (369)
T ss_pred eeeccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHh
Confidence 0111222343331 1 1124699999998887778889999999999
Q ss_pred cCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEEEecCCcccC
Q 017428 253 TAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAP 325 (371)
Q Consensus 253 LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~~~~~~ 325 (371)
|||||+.+-..+-.-.+.+....- ....+ =++.+++..+++..||+++..+........
T Consensus 286 Lk~GGvWiNlGPLlYHF~d~~g~~------------~~~si--Els~edl~~v~~~~GF~~~ke~~Idt~Y~~ 344 (369)
T KOG2798|consen 286 LKPGGVWINLGPLLYHFEDTHGVE------------NEMSI--ELSLEDLKRVASHRGFEVEKERGIDTTYGT 344 (369)
T ss_pred ccCCcEEEeccceeeeccCCCCCc------------ccccc--cccHHHHHHHHHhcCcEEEEeeeeecccCC
Confidence 999999876542111111100000 00011 157899999999999999988765555444
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.3e-05 Score=64.14 Aligned_cols=98 Identities=26% Similarity=0.372 Sum_probs=72.0
Q ss_pred CCCEEEEECCCcChHHHHHHH-----HcCCEEEEEeCCHHHHHHHHHHHHHcC--CCCCeEEEEcCCCCCCCCCCccceE
Q 017428 158 RPKNVVDVGCGIGGSSRYLAK-----KFGAKCQGITLSPVQAQRANALAAARG--LADKVSFQVGDALQQPFPDGQFDLV 230 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~-----~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~fD~v 230 (371)
+..+|+|+|||.|.++..++. ..+.+|++||.++..++.++++.+..+ +..++.+..++..+.. .....+++
T Consensus 25 ~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 103 (141)
T PF13679_consen 25 RCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADES-SSDPPDIL 103 (141)
T ss_pred CCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhc-ccCCCeEE
Confidence 478999999999999999998 447899999999999999999988876 4456777777665543 24567788
Q ss_pred EccccccCcCCHHHHHHHHHHhcCCCcEEEE
Q 017428 231 WSMESGEHMPDKSKFVSELARVTAPAGTIII 261 (371)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i 261 (371)
+..++...+.+ .+++.+.+ |+-..++
T Consensus 104 vgLHaCG~Ls~--~~l~~~~~---~~~~~l~ 129 (141)
T PF13679_consen 104 VGLHACGDLSD--RALRLFIR---PNARFLV 129 (141)
T ss_pred EEeecccchHH--HHHHHHHH---cCCCEEE
Confidence 77766654433 44554444 5554443
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.1e-06 Score=75.23 Aligned_cols=110 Identities=24% Similarity=0.289 Sum_probs=70.8
Q ss_pred HHHHHHHHcC-CCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC
Q 017428 141 MIEETLRFAG-VSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA 217 (371)
Q Consensus 141 ~~~~~l~~~~-~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~ 217 (371)
.+.++.+... +++ .++.+|||+||++|+|+..+.++. ...|+|+|+.+.. ...++.++.+|+
T Consensus 8 KL~ei~~~~~~~~~---~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~------------~~~~~~~i~~d~ 72 (181)
T PF01728_consen 8 KLYEIDEKFKIFKP---GKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD------------PLQNVSFIQGDI 72 (181)
T ss_dssp HHHHHHHTTSSS-T---TTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG------------S-TTEEBTTGGG
T ss_pred HHHHHHHHCCCCCc---ccccEEEEcCCcccceeeeeeecccccceEEEEeccccc------------cccceeeeeccc
Confidence 4455666555 322 235899999999999999999985 4799999998751 124677778776
Q ss_pred CCCC--------CC--CCccceEEccccccCcCC-----------HHHHHHHHHHhcCCCcEEEEEecc
Q 017428 218 LQQP--------FP--DGQFDLVWSMESGEHMPD-----------KSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 218 ~~~~--------~~--~~~fD~v~~~~~l~~~~~-----------~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
.+.. +. .+.||+|++-.+...-.+ ....+.-+...|+|||.+++-.+.
T Consensus 73 ~~~~~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 73 TNPENIKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp EEEEHSHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred chhhHHHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 5531 11 268999998763332221 134555666789999999887654
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.20 E-value=3.8e-06 Score=71.56 Aligned_cols=97 Identities=25% Similarity=0.339 Sum_probs=72.2
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC----CCCCCccceEEccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ----PFPDGQFDLVWSME 234 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~fD~v~~~~ 234 (371)
...|+|.-||.|+.++..+.+ +..|++||++|.-+..|+.+++-.|++++|.|+++|+.++ .+....+|+|+.+-
T Consensus 95 ~~~iidaf~g~gGntiqfa~~-~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~sp 173 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQFALQ-GPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLSP 173 (263)
T ss_pred cchhhhhhhcCCchHHHHHHh-CCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecCC
Confidence 467999999999999999887 7899999999999999999999999999999999998875 23334466777654
Q ss_pred cccCcCCHHHHHHHHHHhcCCC
Q 017428 235 SGEHMPDKSKFVSELARVTAPA 256 (371)
Q Consensus 235 ~l~~~~~~~~~l~~~~~~Lkpg 256 (371)
.-..-.-...-+-.+...++|.
T Consensus 174 pwggp~y~~~~~~DL~~~~~p~ 195 (263)
T KOG2730|consen 174 PWGGPSYLRADVYDLETHLKPM 195 (263)
T ss_pred CCCCcchhhhhhhhhhhhcchh
Confidence 3332211222233444444444
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=98.20 E-value=9e-06 Score=75.79 Aligned_cols=107 Identities=19% Similarity=0.279 Sum_probs=73.9
Q ss_pred CCCEEEEECCCcChHHHHHHHH--------cCCEEEEEeCCHHHHHHHHHHHHHcCCCCC-eEEEEcCCCCCCCC--CCc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKK--------FGAKCQGITLSPVQAQRANALAAARGLADK-VSFQVGDALQQPFP--DGQ 226 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~--------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~~~~--~~~ 226 (371)
++.+|+|.+||+|.+...+.+. ....++|+|+++.++..|+.++.-.+.... ..+...|....+.. ...
T Consensus 46 ~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~~~ 125 (311)
T PF02384_consen 46 KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKNQK 125 (311)
T ss_dssp TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST--
T ss_pred ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccccc
Confidence 3778999999999999888763 257899999999999999887765554332 45788887655422 478
Q ss_pred cceEEccccccCc--C------------------C-HHHHHHHHHHhcCCCcEEEEEec
Q 017428 227 FDLVWSMESGEHM--P------------------D-KSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 227 fD~v~~~~~l~~~--~------------------~-~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
||+|+++--+... . + ...++..+.+.|++||++.++..
T Consensus 126 ~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 126 FDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 9999986332211 0 1 12588999999999999877763
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.19 E-value=6.7e-06 Score=68.94 Aligned_cols=103 Identities=20% Similarity=0.252 Sum_probs=80.1
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
.+++|||+|+|+|..++..++.....|+..|+.|.....++-+.+.+++ ++.+...|... .+..||+|+...+++
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv--~i~~~~~d~~g---~~~~~Dl~LagDlfy 153 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV--SILFTHADLIG---SPPAFDLLLAGDLFY 153 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccc--eeEEeeccccC---CCcceeEEEeeceec
Confidence 4899999999999999998887446799999999999999988888885 68888888765 357799999999988
Q ss_pred CcCCHHHHHHHHHHhcCCCcEEEEEecc
Q 017428 238 HMPDKSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 238 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
.-+.-.+++.-..++...|-.+++.+..
T Consensus 154 ~~~~a~~l~~~~~~l~~~g~~vlvgdp~ 181 (218)
T COG3897 154 NHTEADRLIPWKDRLAEAGAAVLVGDPG 181 (218)
T ss_pred CchHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 7666677887444444444455555543
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=98.19 E-value=8.8e-06 Score=76.95 Aligned_cols=78 Identities=31% Similarity=0.453 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE
Q 017428 135 RAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQV 214 (371)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~ 214 (371)
......+++.+++.+...+ + +|||+-||.|.++..+++. ..+|+|||+++.+++.|+++++.+++ .|++|+.
T Consensus 179 ~~~~~~l~~~~~~~l~~~~-----~-~vlDlycG~G~fsl~la~~-~~~V~gvE~~~~av~~A~~Na~~N~i-~n~~f~~ 250 (352)
T PF05958_consen 179 PEQNEKLYEQALEWLDLSK-----G-DVLDLYCGVGTFSLPLAKK-AKKVIGVEIVEEAVEDARENAKLNGI-DNVEFIR 250 (352)
T ss_dssp HHHHHHHHHHHHHHCTT-T-----T-EEEEES-TTTCCHHHHHCC-SSEEEEEES-HHHHHHHHHHHHHTT---SEEEEE
T ss_pred HHHHHHHHHHHHHHhhcCC-----C-cEEEEeecCCHHHHHHHhh-CCeEEEeeCCHHHHHHHHHHHHHcCC-CcceEEE
Confidence 4455677788888877543 4 8999999999999999997 57999999999999999999999998 5899998
Q ss_pred cCCCCC
Q 017428 215 GDALQQ 220 (371)
Q Consensus 215 ~d~~~~ 220 (371)
+++++.
T Consensus 251 ~~~~~~ 256 (352)
T PF05958_consen 251 GDAEDF 256 (352)
T ss_dssp --SHHC
T ss_pred eeccch
Confidence 877543
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.5e-06 Score=70.29 Aligned_cols=136 Identities=9% Similarity=0.114 Sum_probs=95.6
Q ss_pred CCEEEEECCCc-ChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCC--CCeEEEEcCCCCC--CCCCCccceEEc
Q 017428 159 PKNVVDVGCGI-GGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLA--DKVSFQVGDALQQ--PFPDGQFDLVWS 232 (371)
Q Consensus 159 ~~~VLDlG~Gt-G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~--~~~~~~fD~v~~ 232 (371)
+.+|||+|.|- |..++.+|... ...|...|-+++.++..++....+... ..+.....+.... ......||.|++
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA 109 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe
Confidence 68899999995 44444555444 578999999999999988876554211 1222222222111 123568999999
Q ss_pred cccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCc
Q 017428 233 MESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLE 312 (371)
Q Consensus 233 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~ 312 (371)
..++..-+....+++.+..+|+|.|..++..+- +..+.+.+.+.....||.
T Consensus 110 ADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPR-----------------------------Rg~sL~kF~de~~~~gf~ 160 (201)
T KOG3201|consen 110 ADCLFFDEHHESLVDTIKSLLRPSGRALLFSPR-----------------------------RGQSLQKFLDEVGTVGFT 160 (201)
T ss_pred ccchhHHHHHHHHHHHHHHHhCcccceeEecCc-----------------------------ccchHHHHHHHHHhceeE
Confidence 998876556688999999999999997775421 133677888899999999
Q ss_pred eEEEEecCCcc
Q 017428 313 DIKAEDWSQNV 323 (371)
Q Consensus 313 ~v~~~~~~~~~ 323 (371)
+.-.+.++..+
T Consensus 161 v~l~enyde~i 171 (201)
T KOG3201|consen 161 VCLEENYDEAI 171 (201)
T ss_pred EEecccHhHHH
Confidence 88877777665
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.06 E-value=3.3e-05 Score=65.70 Aligned_cols=121 Identities=17% Similarity=0.206 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE
Q 017428 135 RAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQV 214 (371)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~ 214 (371)
..+...++....+.+.. ++.+||+||-|-|.....+.+.-...-+.|+..|..+...+...-. -..||.+..
T Consensus 84 m~WEtpiMha~A~ai~t------kggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~--ek~nViil~ 155 (271)
T KOG1709|consen 84 MRWETPIMHALAEAIST------KGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWR--EKENVIILE 155 (271)
T ss_pred hhhhhHHHHHHHHHHhh------CCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccc--cccceEEEe
Confidence 34444555555554442 3899999999999999888886555677889999888766653211 125777777
Q ss_pred cCCCCC--CCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 215 GDALQQ--PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 215 ~d~~~~--~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+-.++. .++++.||-|+.-..-++.+|...+.+.+.++|||+|.+-...
T Consensus 156 g~WeDvl~~L~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 156 GRWEDVLNTLPDKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred cchHhhhccccccCcceeEeechhhHHHHHHHHHHHHhhhcCCCceEEEec
Confidence 766653 3678999999876555777888899999999999999988765
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.06 E-value=8.1e-05 Score=69.59 Aligned_cols=121 Identities=23% Similarity=0.244 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcC---------------------------------C--
Q 017428 138 QVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG---------------------------------A-- 182 (371)
Q Consensus 138 ~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~---------------------------------~-- 182 (371)
...+...++.+.+-.+ +..++|-=||+|.++++.|-... +
T Consensus 176 ketLAaAil~lagw~~-----~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~ 250 (381)
T COG0116 176 KETLAAAILLLAGWKP-----DEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARR 250 (381)
T ss_pred hHHHHHHHHHHcCCCC-----CCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhh
Confidence 3446666777666654 67899999999999998876531 1
Q ss_pred -----EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc-CcCC---H----HHHHHHH
Q 017428 183 -----KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE-HMPD---K----SKFVSEL 249 (371)
Q Consensus 183 -----~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~-~~~~---~----~~~l~~~ 249 (371)
.++|+|+++.+++.|+.++...|+.+-|+|.++|+.++.-+-+.+|+||++--.. -+.+ . ..+.+.+
T Consensus 251 ~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~l 330 (381)
T COG0116 251 GKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTL 330 (381)
T ss_pred cCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHH
Confidence 3779999999999999999999999999999999998863337899999974332 1222 2 2334455
Q ss_pred HHhcCCCcEEEEEe
Q 017428 250 ARVTAPAGTIIIVT 263 (371)
Q Consensus 250 ~~~LkpgG~l~i~~ 263 (371)
.+.++--+..+++.
T Consensus 331 k~~~~~ws~~v~tt 344 (381)
T COG0116 331 KRLLAGWSRYVFTT 344 (381)
T ss_pred HHHhcCCceEEEEc
Confidence 56666656666654
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=98.01 E-value=3.8e-05 Score=69.74 Aligned_cols=104 Identities=22% Similarity=0.249 Sum_probs=76.3
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 017428 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (371)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (371)
.+++.+++.+.+.+ +..|||+|+|+|.++..+++. +.+|+++|+++.+.+..++++. ..++++++.+|+.+
T Consensus 17 ~~~~~Iv~~~~~~~-----~~~VlEiGpG~G~lT~~L~~~-~~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~l~ 87 (262)
T PF00398_consen 17 NIADKIVDALDLSE-----GDTVLEIGPGPGALTRELLKR-GKRVIAVEIDPDLAKHLKERFA---SNPNVEVINGDFLK 87 (262)
T ss_dssp HHHHHHHHHHTCGT-----TSEEEEESSTTSCCHHHHHHH-SSEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-TTT
T ss_pred HHHHHHHHhcCCCC-----CCEEEEeCCCCccchhhHhcc-cCcceeecCcHhHHHHHHHHhh---hcccceeeecchhc
Confidence 36677777776654 899999999999999999998 5899999999999999888765 23689999999998
Q ss_pred CCCCC---CccceEEccccccCcCCHHHHHHHHHHhcCC
Q 017428 220 QPFPD---GQFDLVWSMESGEHMPDKSKFVSELARVTAP 255 (371)
Q Consensus 220 ~~~~~---~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lkp 255 (371)
...+. +....|+++.-. ++. ..++.++...-+.
T Consensus 88 ~~~~~~~~~~~~~vv~NlPy-~is--~~il~~ll~~~~~ 123 (262)
T PF00398_consen 88 WDLYDLLKNQPLLVVGNLPY-NIS--SPILRKLLELYRF 123 (262)
T ss_dssp SCGGGHCSSSEEEEEEEETG-TGH--HHHHHHHHHHGGG
T ss_pred cccHHhhcCCceEEEEEecc-cch--HHHHHHHhhcccc
Confidence 86543 344566665433 332 3566666654344
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=3e-05 Score=71.41 Aligned_cols=87 Identities=15% Similarity=0.181 Sum_probs=66.6
Q ss_pred CCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccc
Q 017428 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (371)
Q Consensus 157 ~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l 236 (371)
.++.++|||||++|+|+..+.++ +..|++||..+-... +. -.++|.....|......+.+.+|.|+|-.+
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r-G~~V~AVD~g~l~~~-----L~---~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv- 279 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR-GMFVTAVDNGPMAQS-----LM---DTGQVEHLRADGFKFRPPRKNVDWLVCDMV- 279 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc-CCEEEEEechhcCHh-----hh---CCCCEEEEeccCcccCCCCCCCCEEEEecc-
Confidence 46899999999999999999997 889999996652211 11 136899999887665322678999987643
Q ss_pred cCcCCHHHHHHHHHHhcCCC
Q 017428 237 EHMPDKSKFVSELARVTAPA 256 (371)
Q Consensus 237 ~~~~~~~~~l~~~~~~Lkpg 256 (371)
..+.++.+-+.++|..|
T Consensus 280 ---e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 280 ---EKPARVAELMAQWLVNG 296 (357)
T ss_pred ---cCHHHHHHHHHHHHhcC
Confidence 46778888889998776
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=2.8e-05 Score=64.67 Aligned_cols=101 Identities=21% Similarity=0.151 Sum_probs=79.5
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccc--c
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES--G 236 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~--l 236 (371)
...+.|+|+|+|.++...+.. ..+|++++.+|.-.+.|.+++.-.|. .|++++.+|+.+..| +..|+|+|-.. .
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~-~n~evv~gDA~~y~f--e~ADvvicEmlDTa 108 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGD-VNWEVVVGDARDYDF--ENADVVICEMLDTA 108 (252)
T ss_pred hhceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCC-cceEEEecccccccc--cccceeHHHHhhHH
Confidence 467999999999999888776 56899999999999999998766665 689999999999887 55798886321 1
Q ss_pred cCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 237 EHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 237 ~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
--.+....++..+...||-++.++=..
T Consensus 109 Li~E~qVpV~n~vleFLr~d~tiiPq~ 135 (252)
T COG4076 109 LIEEKQVPVINAVLEFLRYDPTIIPQE 135 (252)
T ss_pred hhcccccHHHHHHHHHhhcCCccccHH
Confidence 111344677888888999888877543
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00011 Score=63.43 Aligned_cols=138 Identities=17% Similarity=0.164 Sum_probs=88.3
Q ss_pred CCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---CCCCccc
Q 017428 154 DPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---FPDGQFD 228 (371)
Q Consensus 154 ~~~~~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD 228 (371)
.+..++.+||-+|+.+|.....+++-. ...|++|+.|+......-..+++. +|+--+..|+.... .--+.+|
T Consensus 69 ~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~DAr~P~~Y~~lv~~VD 145 (229)
T PF01269_consen 69 IPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPILEDARHPEKYRMLVEMVD 145 (229)
T ss_dssp -S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEEES-TTSGGGGTTTS--EE
T ss_pred cCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---CceeeeeccCCChHHhhccccccc
Confidence 334569999999999999999999876 468999999996554443333332 58999999998742 1135899
Q ss_pred eEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEecc--CCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHH
Q 017428 229 LVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC--HRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLL 306 (371)
Q Consensus 229 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 306 (371)
+|++.-. +-....-++.++...||+||.+++.--. -+...+ ... ...+-.+.|
T Consensus 146 vI~~DVa--Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~--------p~~---------------vf~~e~~~L 200 (229)
T PF01269_consen 146 VIFQDVA--QPDQARIAALNARHFLKPGGHLIISIKARSIDSTAD--------PEE---------------VFAEEVKKL 200 (229)
T ss_dssp EEEEE-S--STTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSS--------HHH---------------HHHHHHHHH
T ss_pred EEEecCC--ChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCC--------HHH---------------HHHHHHHHH
Confidence 9987533 2123456788898999999999987521 111000 001 123345678
Q ss_pred HhCCCceEEEEec
Q 017428 307 QSLSLEDIKAEDW 319 (371)
Q Consensus 307 ~~aGF~~v~~~~~ 319 (371)
++.||+.++....
T Consensus 201 ~~~~~~~~e~i~L 213 (229)
T PF01269_consen 201 KEEGFKPLEQITL 213 (229)
T ss_dssp HCTTCEEEEEEE-
T ss_pred HHcCCChheEecc
Confidence 8899998887654
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=97.93 E-value=2.1e-06 Score=66.55 Aligned_cols=99 Identities=24% Similarity=0.383 Sum_probs=45.1
Q ss_pred EEECCCcChHHHHHHHHc--C--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--CCCCCccceEEccccc
Q 017428 163 VDVGCGIGGSSRYLAKKF--G--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--PFPDGQFDLVWSMESG 236 (371)
Q Consensus 163 LDlG~GtG~~~~~l~~~~--~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD~v~~~~~l 236 (371)
||+|+..|..+..+++.. . .+++++|..+. .+.+++.+++.++..+++++.++..+. .++.++||+|+.-. -
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg-~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG-D 78 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES--
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-C
Confidence 699999999998888765 2 37999999995 334444555466667899999998653 23357899998754 2
Q ss_pred cCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 237 EHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 237 ~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
|..+.....+..+.+.|+|||.+++-+
T Consensus 79 H~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 HSYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp --HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 223445677889999999999998854
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.90 E-value=8.9e-05 Score=62.15 Aligned_cols=149 Identities=15% Similarity=0.130 Sum_probs=91.8
Q ss_pred HHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcC--CEEEEEeCCHH----------HHHHHHHHHHHcCCCCCeE
Q 017428 144 ETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPV----------QAQRANALAAARGLADKVS 211 (371)
Q Consensus 144 ~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~--~~v~gvD~s~~----------~~~~a~~~~~~~~~~~~v~ 211 (371)
++|...++++ +.+|+|+=.|.|.|+..++...+ ..|+++-..+. +-..+++. ...|++
T Consensus 39 E~L~FaGlkp-----g~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~-----~~aN~e 108 (238)
T COG4798 39 EVLAFAGLKP-----GATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREP-----VYANVE 108 (238)
T ss_pred ceeEEeccCC-----CCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhh-----hhhhhh
Confidence 4455566665 99999999999999999988763 35666543322 11112111 123555
Q ss_pred EEEcCCCCCCCCCCccceEEccccccCc-------CCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHH
Q 017428 212 FQVGDALQQPFPDGQFDLVWSMESGEHM-------PDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELL 284 (371)
Q Consensus 212 ~~~~d~~~~~~~~~~fD~v~~~~~l~~~-------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~ 284 (371)
.+-.+...++ +.+..|+++.....|-+ .....+...+++.|||||.+++.+........... ..
T Consensus 109 ~~~~~~~A~~-~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~d------t~-- 179 (238)
T COG4798 109 VIGKPLVALG-APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSD------TI-- 179 (238)
T ss_pred hhCCcccccC-CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhh------hh--
Confidence 5555555544 34556666653332222 23478899999999999999999864332211100 00
Q ss_pred HHHhhccCCCCCCCHHHHHHHHHhCCCceEEEEec
Q 017428 285 KKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDW 319 (371)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~ 319 (371)
.. ...+...+....+.+||........
T Consensus 180 ----~~----~ri~~a~V~a~veaaGFkl~aeS~i 206 (238)
T COG4798 180 ----TL----HRIDPAVVIAEVEAAGFKLEAESEI 206 (238)
T ss_pred ----hh----cccChHHHHHHHHhhcceeeeeehh
Confidence 00 2457889999999999997765443
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00021 Score=65.57 Aligned_cols=105 Identities=23% Similarity=0.222 Sum_probs=77.5
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHH--HHHc---C-CCCCeEEEEcCCCCC-CCCCCccceE
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANAL--AAAR---G-LADKVSFQVGDALQQ-PFPDGQFDLV 230 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~--~~~~---~-~~~~v~~~~~d~~~~-~~~~~~fD~v 230 (371)
..+||-+|.|.|..+.++.+.- -.+|+-+|++|.|++.++.. .... . -+++++++..|+.+. .-..+.||+|
T Consensus 290 a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~v 369 (508)
T COG4262 290 ARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVV 369 (508)
T ss_pred cceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEE
Confidence 6789999999999999998854 36899999999999999843 2211 1 246899999998775 2234689999
Q ss_pred EccccccCcCC-----HHHHHHHHHHhcCCCcEEEEEe
Q 017428 231 WSMESGEHMPD-----KSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 231 ~~~~~l~~~~~-----~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
|...-=-.-+. -..+..-+.+.|+++|.+++..
T Consensus 370 IVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 370 IVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred EEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEec
Confidence 87432111111 1467888899999999999875
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00014 Score=69.67 Aligned_cols=103 Identities=27% Similarity=0.294 Sum_probs=85.1
Q ss_pred CEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccCc
Q 017428 160 KNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHM 239 (371)
Q Consensus 160 ~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 239 (371)
.++|-+|||.-.+...+-+.....|+-+|+|+..++....+... . .+-..+...|+..+.|++++||+|+.-..+.++
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~-~-~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal 127 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAK-E-RPEMQMVEMDMDQLVFEDESFDIVIDKGTLDAL 127 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhcccc-C-CcceEEEEecchhccCCCcceeEEEecCccccc
Confidence 38999999999888888775446799999999998887776542 2 256899999999999999999999999988887
Q ss_pred C-C---------HHHHHHHHHHhcCCCcEEEEEec
Q 017428 240 P-D---------KSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 240 ~-~---------~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
- + ....+.++.|+|+|||+.+.+..
T Consensus 128 ~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 128 FEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred cCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 2 2 13567899999999999888776
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00017 Score=72.27 Aligned_cols=75 Identities=20% Similarity=0.134 Sum_probs=54.7
Q ss_pred CCEEEEECCCcChHHHHHHHHcC---------CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CCC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFG---------AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FPD 224 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~---------~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~ 224 (371)
..+|||.|||+|.+...+++... ..++|+|+++..+..++.++...+. ..+.+...|..... -..
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~-~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL-LEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC-CCceeeeccccccccccccccc
Confidence 57999999999999998887551 4789999999999999998876541 23445555533221 112
Q ss_pred CccceEEccc
Q 017428 225 GQFDLVWSME 234 (371)
Q Consensus 225 ~~fD~v~~~~ 234 (371)
+.||+|+++=
T Consensus 111 ~~fD~IIgNP 120 (524)
T TIGR02987 111 DLFDIVITNP 120 (524)
T ss_pred CcccEEEeCC
Confidence 5799999863
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0014 Score=62.02 Aligned_cols=162 Identities=17% Similarity=0.225 Sum_probs=88.4
Q ss_pred CCEEEEECCCcChHHHHHHHHc----------------CCEEEEEeCCHHHHHHHHHHHHH---------cC---CCCCe
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF----------------GAKCQGITLSPVQAQRANALAAA---------RG---LADKV 210 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~----------------~~~v~gvD~s~~~~~~a~~~~~~---------~~---~~~~v 210 (371)
..+|+|+|||+|..+..+.... ..+|..-|+...-....=+.+.. .. ...+.
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 6789999999998775553211 13566667653322222111110 00 00011
Q ss_pred EEE---EcCCCCCCCCCCccceEEccccccCcCCH--------------------------------------HHHHHHH
Q 017428 211 SFQ---VGDALQQPFPDGQFDLVWSMESGEHMPDK--------------------------------------SKFVSEL 249 (371)
Q Consensus 211 ~~~---~~d~~~~~~~~~~fD~v~~~~~l~~~~~~--------------------------------------~~~l~~~ 249 (371)
-|. .+.+-.--||.++.+++++.+++|++... ..+|+.=
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~R 223 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRAR 223 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 122 22333334789999999999999988531 1223333
Q ss_pred HHhcCCCcEEEEEeccCCCCCcCccc--cChH---HHHHHHH----------HhhccCCCC-CCCHHHHHHHHHhCC-Cc
Q 017428 250 ARVTAPAGTIIIVTWCHRDLAPSEES--LQPW---EQELLKK----------ICDAYYLPA-WCSTADYVKLLQSLS-LE 312 (371)
Q Consensus 250 ~~~LkpgG~l~i~~~~~~~~~~~~~~--~~~~---~~~~~~~----------~~~~~~~~~-~~~~~~~~~ll~~aG-F~ 312 (371)
.+-|.|||++++.-.+.....+.... ...| ....+.. -.+.+..|. ..+.+|+++.+++.| |.
T Consensus 224 a~ELvpGG~mvl~~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~~gsF~ 303 (386)
T PLN02668 224 AQEMKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEANGSFA 303 (386)
T ss_pred HHHhccCcEEEEEEecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhhcCCEE
Confidence 45688999999988766432222111 1111 1111221 122334442 368999999999887 66
Q ss_pred eEEEEecC
Q 017428 313 DIKAEDWS 320 (371)
Q Consensus 313 ~v~~~~~~ 320 (371)
+.+++.+.
T Consensus 304 I~~le~~~ 311 (386)
T PLN02668 304 IDKLEVFK 311 (386)
T ss_pred eeeeEEee
Confidence 66666544
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0001 Score=67.57 Aligned_cols=107 Identities=22% Similarity=0.309 Sum_probs=83.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C-CCCCccceEEcc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P-FPDGQFDLVWSM 233 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~~~~~fD~v~~~ 233 (371)
++.+|||+.++.|.-+..+++.. ...|++.|+++.-+...+.++++.|+ .++.....|.... + .....||.|+.-
T Consensus 85 ~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~-~~v~~~~~D~~~~~~~~~~~~fd~VlvD 163 (283)
T PF01189_consen 85 PGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV-FNVIVINADARKLDPKKPESKFDRVLVD 163 (283)
T ss_dssp TTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT--SSEEEEESHHHHHHHHHHTTTEEEEEEE
T ss_pred ccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC-ceEEEEeeccccccccccccccchhhcC
Confidence 48899999999999999999987 47999999999999999999999998 4788887777664 1 233469999862
Q ss_pred ------ccccCcCCH----------------HHHHHHHHHhc----CCCcEEEEEecc
Q 017428 234 ------ESGEHMPDK----------------SKFVSELARVT----APAGTIIIVTWC 265 (371)
Q Consensus 234 ------~~l~~~~~~----------------~~~l~~~~~~L----kpgG~l~i~~~~ 265 (371)
.++..-++. ..+|+++.+.+ ||||+++.++.+
T Consensus 164 aPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS 221 (283)
T PF01189_consen 164 APCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCS 221 (283)
T ss_dssp CSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESH
T ss_pred CCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEecc
Confidence 122222221 36899999999 999999998753
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00015 Score=59.18 Aligned_cols=58 Identities=22% Similarity=0.246 Sum_probs=50.4
Q ss_pred EEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 017428 161 NVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (371)
Q Consensus 161 ~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (371)
.|||+|||.|.++..+++.. +.+|+++|+++.+.+.++++++.++++ ++.++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~-~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLP-NVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEEeeeeC
Confidence 38999999999999998876 458999999999999999999888774 68888877655
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0021 Score=55.37 Aligned_cols=101 Identities=15% Similarity=0.181 Sum_probs=78.0
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
+.++.||||-.|.+..++.+.. ...+++.|+++.-++.|.+++.+.++.++++...+|....--+++.+|+|+..++=.
T Consensus 17 ~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGMGG 96 (226)
T COG2384 17 GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGMGG 96 (226)
T ss_pred CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCCcH
Confidence 5669999999999999999986 467999999999999999999999999999999999854323345799988765433
Q ss_pred CcCCHHHHHHHHHHhcCCCcEEEE
Q 017428 238 HMPDKSKFVSELARVTAPAGTIII 261 (371)
Q Consensus 238 ~~~~~~~~l~~~~~~LkpgG~l~i 261 (371)
. -...++++-...|+-=-++++
T Consensus 97 ~--lI~~ILee~~~~l~~~~rlIL 118 (226)
T COG2384 97 T--LIREILEEGKEKLKGVERLIL 118 (226)
T ss_pred H--HHHHHHHHhhhhhcCcceEEE
Confidence 1 235566666666653334554
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00075 Score=61.59 Aligned_cols=81 Identities=15% Similarity=0.167 Sum_probs=50.5
Q ss_pred CCEEEEECCCcChH-HHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc-CCCCCeEEEEcCCCC-----CCCCCCccceEE
Q 017428 159 PKNVVDVGCGIGGS-SRYLAKKFGAKCQGITLSPVQAQRANALAAAR-GLADKVSFQVGDALQ-----QPFPDGQFDLVW 231 (371)
Q Consensus 159 ~~~VLDlG~GtG~~-~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~~~~~v~~~~~d~~~-----~~~~~~~fD~v~ 231 (371)
..++||||||.... .+..++.++.+++|+|+++..++.|++.++.+ ++..+|+++...-.. +..+++.||+.+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftm 182 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTM 182 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEe
Confidence 57899999998754 44455555999999999999999999999999 888899988664222 112347899999
Q ss_pred ccccccCc
Q 017428 232 SMESGEHM 239 (371)
Q Consensus 232 ~~~~l~~~ 239 (371)
|+--++.-
T Consensus 183 CNPPFy~s 190 (299)
T PF05971_consen 183 CNPPFYSS 190 (299)
T ss_dssp E-----SS
T ss_pred cCCccccC
Confidence 98776653
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00034 Score=64.21 Aligned_cols=97 Identities=13% Similarity=0.156 Sum_probs=76.2
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (371)
+++++++.+...+ +..++|.-+|.|+.+..+++.+ ..+|+|+|.++.+++.++++++.. .+++.++++++.+
T Consensus 8 ll~Evl~~L~~~~-----ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~ 80 (305)
T TIGR00006 8 LLDEVVEGLNIKP-----DGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFAN 80 (305)
T ss_pred hHHHHHHhcCcCC-----CCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHH
Confidence 5677777776554 7899999999999999999987 579999999999999999988764 3689999999877
Q ss_pred CC-----CCCCccceEEcccccc--CcCCHHH
Q 017428 220 QP-----FPDGQFDLVWSMESGE--HMPDKSK 244 (371)
Q Consensus 220 ~~-----~~~~~fD~v~~~~~l~--~~~~~~~ 244 (371)
+. ...+++|.|++...+. ++.+.++
T Consensus 81 l~~~l~~~~~~~vDgIl~DLGvSS~Qld~~~R 112 (305)
T TIGR00006 81 FFEHLDELLVTKIDGILVDLGVSSPQLDDPER 112 (305)
T ss_pred HHHHHHhcCCCcccEEEEeccCCHhhcCCCCC
Confidence 52 2346799999876553 3344443
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0038 Score=52.99 Aligned_cols=115 Identities=16% Similarity=0.267 Sum_probs=81.5
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (371)
+.+.++. +++..+..++.+||=+|+.+|.....+++-.+ ..+++|++|+......-..+++. +|+--+..|+..
T Consensus 61 LaAaIl~--Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R---~Ni~PIL~DA~~ 135 (231)
T COG1889 61 LAAAILK--GLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR---PNIIPILEDARK 135 (231)
T ss_pred HHHHHHc--CcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC---CCceeeecccCC
Confidence 4444443 23333445699999999999999999998764 67999999998776555544443 578889999877
Q ss_pred CC---CCCCccceEEccccccCcCCH-HHHHHHHHHhcCCCcEEEEEe
Q 017428 220 QP---FPDGQFDLVWSMESGEHMPDK-SKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 220 ~~---~~~~~fD~v~~~~~l~~~~~~-~~~l~~~~~~LkpgG~l~i~~ 263 (371)
.. .--+..|+|+.--+ -++. +-+..++...||+||.++++-
T Consensus 136 P~~Y~~~Ve~VDviy~DVA---Qp~Qa~I~~~Na~~FLk~~G~~~i~i 180 (231)
T COG1889 136 PEKYRHLVEKVDVIYQDVA---QPNQAEILADNAEFFLKKGGYVVIAI 180 (231)
T ss_pred cHHhhhhcccccEEEEecC---CchHHHHHHHHHHHhcccCCeEEEEE
Confidence 42 11356898876421 1333 456788999999999888765
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00012 Score=70.17 Aligned_cols=67 Identities=30% Similarity=0.496 Sum_probs=59.0
Q ss_pred HHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 017428 147 RFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (371)
Q Consensus 147 ~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (371)
+++.++. +..+||+-||||.+++.+++. -.+|+||++++..++.|+.+++.+|+ .|++|+++-++++
T Consensus 377 e~~~l~~-----~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~dA~~nA~~Ngi-sNa~Fi~gqaE~~ 443 (534)
T KOG2187|consen 377 EWAGLPA-----DKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVEDAEKNAQINGI-SNATFIVGQAEDL 443 (534)
T ss_pred HHhCCCC-----CcEEEEEeecCCceehhhhcc-ccceeeeecChhhcchhhhcchhcCc-cceeeeecchhhc
Confidence 4666654 789999999999999999997 46899999999999999999999998 6999999976664
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00023 Score=57.31 Aligned_cols=82 Identities=18% Similarity=0.217 Sum_probs=59.7
Q ss_pred EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCccceEEccccccCcCC------H---HHHHHHHHH
Q 017428 183 KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWSMESGEHMPD------K---SKFVSELAR 251 (371)
Q Consensus 183 ~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~v~~~~~l~~~~~------~---~~~l~~~~~ 251 (371)
+|+|+|+-+++++.+++++++.++..+++++...=+++. .+.+++|+++.+...--=.| + ..+++.+.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~ 80 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALE 80 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 589999999999999999999998888999998876653 23358999987754321112 2 468899999
Q ss_pred hcCCCcEEEEEec
Q 017428 252 VTAPAGTIIIVTW 264 (371)
Q Consensus 252 ~LkpgG~l~i~~~ 264 (371)
+|+|||.+.++..
T Consensus 81 lL~~gG~i~iv~Y 93 (140)
T PF06962_consen 81 LLKPGGIITIVVY 93 (140)
T ss_dssp HEEEEEEEEEEE-
T ss_pred hhccCCEEEEEEe
Confidence 9999999999874
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00087 Score=55.97 Aligned_cols=99 Identities=17% Similarity=0.284 Sum_probs=68.9
Q ss_pred CCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc-CCCCC--------CCCCC
Q 017428 157 KRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVG-DALQQ--------PFPDG 225 (371)
Q Consensus 157 ~~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~--------~~~~~ 225 (371)
.|+.+|||+||..|.|+....++. ..-|.|||+-... .++.+.++.+ |+.+. .+|+.
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~------------p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r 135 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE------------PPEGATIIQGNDVTDPETYRKIFEALPNR 135 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc------------CCCCcccccccccCCHHHHHHHHHhCCCC
Confidence 468999999999999999988876 4679999985432 2345666666 77764 25678
Q ss_pred ccceEEccccccCc----CCHH-------HHHHHHHHhcCCCcEEEEEeccCC
Q 017428 226 QFDLVWSMESGEHM----PDKS-------KFVSELARVTAPAGTIIIVTWCHR 267 (371)
Q Consensus 226 ~fD~v~~~~~l~~~----~~~~-------~~l~~~~~~LkpgG~l~i~~~~~~ 267 (371)
..|+|++-..-... .|-. .++.-+...++|+|.+++-.|...
T Consensus 136 ~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~ 188 (232)
T KOG4589|consen 136 PVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGS 188 (232)
T ss_pred cccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCC
Confidence 89999875332221 2222 344445567789999999877543
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00052 Score=58.03 Aligned_cols=105 Identities=25% Similarity=0.374 Sum_probs=70.0
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCC------CCCeEEEEcCCCCC-C--CCCCccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGL------ADKVSFQVGDALQQ-P--FPDGQFD 228 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~------~~~v~~~~~d~~~~-~--~~~~~fD 228 (371)
...+.|||||-|.+...++..+ ..-+.|.++-...-++.++++..... ..|+.+...+.... | |..++.+
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLs 140 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLS 140 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccc
Confidence 4679999999999999999998 67899999999999999998877641 23555555554432 2 2222222
Q ss_pred eEEccccccCcCCH--------HHHHHHHHHhcCCCcEEEEEe
Q 017428 229 LVWSMESGEHMPDK--------SKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 229 ~v~~~~~l~~~~~~--------~~~l~~~~~~LkpgG~l~i~~ 263 (371)
-.+...-=-|+... ..++.+..-+|++||.++...
T Consensus 141 kmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 141 KMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred cceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 22211111122110 256777888999999999875
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.44 E-value=5.9e-05 Score=60.80 Aligned_cols=47 Identities=21% Similarity=0.335 Sum_probs=40.9
Q ss_pred CCCCCCCCccceEEccccccCcC--CHHHHHHHHHHhcCCCcEEEEEec
Q 017428 218 LQQPFPDGQFDLVWSMESGEHMP--DKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 218 ~~~~~~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
...+|.+++.|+|++-++++|+. .-..+++++++.|||||+|-++..
T Consensus 39 ~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvP 87 (185)
T COG4627 39 NESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVP 87 (185)
T ss_pred hhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcC
Confidence 34578899999999999999995 346889999999999999999874
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00095 Score=59.08 Aligned_cols=90 Identities=21% Similarity=0.255 Sum_probs=68.5
Q ss_pred HHHHHHcCCCCCCCCCCC--EEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc------C--CCCCeEE
Q 017428 143 EETLRFAGVSEDPTKRPK--NVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR------G--LADKVSF 212 (371)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~--~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~------~--~~~~v~~ 212 (371)
+.+++.++++. +. +|||+-+|+|..+..++.. |+.|+++|-++......++.++.. + +..++++
T Consensus 76 ~~l~kAvglk~-----g~~p~VLD~TAGlG~Da~~las~-G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l 149 (250)
T PRK10742 76 EAVAKAVGIKG-----DYLPDVVDATAGLGRDAFVLASV-GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQL 149 (250)
T ss_pred cHHHHHhCCCC-----CCCCEEEECCCCccHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEE
Confidence 44556666654 55 8999999999999999987 889999999999999998888774 2 2246888
Q ss_pred EEcCCCCC-CCCCCccceEEccccccC
Q 017428 213 QVGDALQQ-PFPDGQFDLVWSMESGEH 238 (371)
Q Consensus 213 ~~~d~~~~-~~~~~~fD~v~~~~~l~~ 238 (371)
+.+|..+. .-...+||+|++-=++.|
T Consensus 150 ~~~da~~~L~~~~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 150 IHASSLTALTDITPRPQVVYLDPMFPH 176 (250)
T ss_pred EeCcHHHHHhhCCCCCcEEEECCCCCC
Confidence 88887653 112247999998766655
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00051 Score=60.59 Aligned_cols=81 Identities=23% Similarity=0.355 Sum_probs=61.3
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l 236 (371)
++.+|+|||||.--++....... ++.|+|+|++..+++..+..+...++ +..+...|....+ +....|+.+..-++
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~--~~~~~v~Dl~~~~-~~~~~DlaLllK~l 181 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV--PHDARVRDLLSDP-PKEPADLALLLKTL 181 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT---CEEEEEE-TTTSH-TTSEESEEEEET-H
T ss_pred CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC--CcceeEeeeeccC-CCCCcchhhHHHHH
Confidence 37899999999999988776554 67999999999999999999988875 5777788887764 45789999988777
Q ss_pred cCcCC
Q 017428 237 EHMPD 241 (371)
Q Consensus 237 ~~~~~ 241 (371)
+-+..
T Consensus 182 p~le~ 186 (251)
T PF07091_consen 182 PCLER 186 (251)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66643
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0012 Score=61.88 Aligned_cols=109 Identities=15% Similarity=0.176 Sum_probs=85.0
Q ss_pred CCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---CCCCccce
Q 017428 155 PTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---FPDGQFDL 229 (371)
Q Consensus 155 ~~~~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~ 229 (371)
.+.++.||||..+-.|+-+.++|... ...|++.|.+..-+...+.++...|+ .|......|...+| ++. +||.
T Consensus 238 ~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv-~ntiv~n~D~~ef~~~~~~~-~fDR 315 (460)
T KOG1122|consen 238 DPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGV-TNTIVSNYDGREFPEKEFPG-SFDR 315 (460)
T ss_pred CCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCC-CceEEEccCcccccccccCc-ccce
Confidence 44679999999999999999988866 35899999999999999999999998 46777788877654 444 8999
Q ss_pred EEccccccC------------cC---C-------HHHHHHHHHHhcCCCcEEEEEecc
Q 017428 230 VWSMESGEH------------MP---D-------KSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 230 v~~~~~l~~------------~~---~-------~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
|+.-.-... .. + ..++|..+..++++||+|+..+.+
T Consensus 316 VLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCS 373 (460)
T KOG1122|consen 316 VLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCS 373 (460)
T ss_pred eeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeee
Confidence 986322221 11 1 136788889999999999998754
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0024 Score=56.68 Aligned_cols=105 Identities=23% Similarity=0.151 Sum_probs=73.0
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHH----HHHHcCCCCCeEEEEcCCCCCC---CCCCc-cceE
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANA----LAAARGLADKVSFQVGDALQQP---FPDGQ-FDLV 230 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~----~~~~~~~~~~v~~~~~d~~~~~---~~~~~-fD~v 230 (371)
..+|||+|+|+|..++.++...++.|+-.|+.......... ......+...+.+...+..+.+ +-... ||+|
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dli 166 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDLI 166 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccEE
Confidence 57899999999988887777668899999886544332211 1111222235666666655532 11233 9999
Q ss_pred EccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
++..++++-.....++.-+...|..+|.+++..
T Consensus 167 lasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~ 199 (248)
T KOG2793|consen 167 LASDVVYEEESFEGLVKTLAFLLAKDGTIFLAY 199 (248)
T ss_pred EEeeeeecCCcchhHHHHHHHHHhcCCeEEEEE
Confidence 999999998888999999999999999555543
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0013 Score=56.54 Aligned_cols=104 Identities=15% Similarity=0.259 Sum_probs=57.7
Q ss_pred CCEEEEECCCcChHHHHHHHHc-----CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----CC--CCcc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-----GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----FP--DGQF 227 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~--~~~f 227 (371)
+..|+|+|.-.|+.+..+|..+ .++|+|||+...... ++..+...+.++|+++++|..+.. .. ....
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~--~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~ 110 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHN--RKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPP 110 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S-GGGG----TTEEEEES-SSSTHHHHTSGSS----
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhc--hHHHhhccccCceEEEECCCCCHHHHHHHHHhhccC
Confidence 7899999999999888887644 479999999543321 122222345579999999987752 11 1112
Q ss_pred ce-EEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 228 DL-VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 228 D~-v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
+- +++-.+-|.-.+..+.|+....++++|+++++.|.
T Consensus 111 ~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt 148 (206)
T PF04989_consen 111 HPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVEDT 148 (206)
T ss_dssp SSEEEEESS----SSHHHHHHHHHHT--TT-EEEETSH
T ss_pred CceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEec
Confidence 32 23334444446777888889999999999999763
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0029 Score=55.24 Aligned_cols=151 Identities=13% Similarity=0.082 Sum_probs=96.5
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeE-EEEcCCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVS-FQVGDALQ 219 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~-~~~~d~~~ 219 (371)
.+...++...+.. ++..+||+|+.||+++..+.++...+|+++|..-.|+.+--+ ..+++. +...++..
T Consensus 66 KL~~ale~F~l~~----k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR------~d~rV~~~E~tN~r~ 135 (245)
T COG1189 66 KLEKALEEFELDV----KGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLR------NDPRVIVLERTNVRY 135 (245)
T ss_pred HHHHHHHhcCcCC----CCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHh------cCCcEEEEecCChhh
Confidence 3445555555554 589999999999999999999744689999999988876332 123443 33445554
Q ss_pred CC---CCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCC-
Q 017428 220 QP---FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPA- 295 (371)
Q Consensus 220 ~~---~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 295 (371)
+. +. +..|++++--++. ....++..+..+++|+|.++...- +.+. .- ...+ ....-...
T Consensus 136 l~~~~~~-~~~d~~v~DvSFI---SL~~iLp~l~~l~~~~~~~v~LvK--PQFE----ag----r~~v---~kkGvv~d~ 198 (245)
T COG1189 136 LTPEDFT-EKPDLIVIDVSFI---SLKLILPALLLLLKDGGDLVLLVK--PQFE----AG----REQV---GKKGVVRDP 198 (245)
T ss_pred CCHHHcc-cCCCeEEEEeehh---hHHHHHHHHHHhcCCCceEEEEec--chhh----hh----hhhc---CcCceecCc
Confidence 42 32 4678888876554 456789999999999998887541 1110 00 0101 11100110
Q ss_pred ---CCCHHHHHHHHHhCCCceEEEEe
Q 017428 296 ---WCSTADYVKLLQSLSLEDIKAED 318 (371)
Q Consensus 296 ---~~~~~~~~~ll~~aGF~~v~~~~ 318 (371)
-.....+.+++++.||....+..
T Consensus 199 ~~~~~v~~~i~~~~~~~g~~~~gl~~ 224 (245)
T COG1189 199 KLHAEVLSKIENFAKELGFQVKGLIK 224 (245)
T ss_pred chHHHHHHHHHHHHhhcCcEEeeeEc
Confidence 12356788899999999887753
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00025 Score=68.13 Aligned_cols=98 Identities=22% Similarity=0.291 Sum_probs=64.1
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC-CCCCCCCccceEEcccccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL-QQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~~~~~~fD~v~~~~~l~ 237 (371)
-..|+|..+|.|+++..|.+. . |......+..-...-..+-..|+ +-. -.|.. .++.-+.+||+|++.+++.
T Consensus 366 iRNVMDMnAg~GGFAAAL~~~-~--VWVMNVVP~~~~ntL~vIydRGL---IG~-yhDWCE~fsTYPRTYDLlHA~~lfs 438 (506)
T PF03141_consen 366 IRNVMDMNAGYGGFAAALIDD-P--VWVMNVVPVSGPNTLPVIYDRGL---IGV-YHDWCEAFSTYPRTYDLLHADGLFS 438 (506)
T ss_pred eeeeeeecccccHHHHHhccC-C--ceEEEecccCCCCcchhhhhccc---chh-ccchhhccCCCCcchhheehhhhhh
Confidence 467999999999999999775 3 33333333211111111112232 222 22433 2343358999999999988
Q ss_pred CcCC---HHHHHHHHHHhcCCCcEEEEEe
Q 017428 238 HMPD---KSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 238 ~~~~---~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
...+ ...++-++-|+|+|||+++|-+
T Consensus 439 ~~~~rC~~~~illEmDRILRP~G~~iiRD 467 (506)
T PF03141_consen 439 LYKDRCEMEDILLEMDRILRPGGWVIIRD 467 (506)
T ss_pred hhcccccHHHHHHHhHhhcCCCceEEEec
Confidence 8754 5889999999999999999976
|
; GO: 0008168 methyltransferase activity |
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0047 Score=49.60 Aligned_cols=116 Identities=19% Similarity=0.205 Sum_probs=83.7
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (371)
.++.++..+.-. +..+.+|+|+|.|......++..-..-+|+++++-.+.+++-+.-+.|+.....|..-|+-+.
T Consensus 60 Qv~nVLSll~~n-----~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~ 134 (199)
T KOG4058|consen 60 QVENVLSLLRGN-----PKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKV 134 (199)
T ss_pred HHHHHHHHccCC-----CCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhc
Confidence 455566666544 378999999999999888887632578999999999999999988889988999999998777
Q ss_pred CCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccC
Q 017428 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCH 266 (371)
Q Consensus 221 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 266 (371)
.+.+-.+-+|+... .-++| +-.++..-|..|-.++.+-|..
T Consensus 135 dl~dy~~vviFgae--s~m~d---Le~KL~~E~p~nt~vvacRFPL 175 (199)
T KOG4058|consen 135 DLRDYRNVVIFGAE--SVMPD---LEDKLRTELPANTRVVACRFPL 175 (199)
T ss_pred cccccceEEEeehH--HHHhh---hHHHHHhhCcCCCeEEEEecCC
Confidence 65444443443332 22233 3345555677788888776543
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.01 Score=55.75 Aligned_cols=163 Identities=15% Similarity=0.181 Sum_probs=82.4
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-----------C------CEEEEEeCCHHHHHHHHHHHHHc----CCCCCe--EEEE
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF-----------G------AKCQGITLSPVQAQRANALAAAR----GLADKV--SFQV 214 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~-----------~------~~v~gvD~s~~~~~~a~~~~~~~----~~~~~v--~~~~ 214 (371)
...+|+|+||..|..++.+.... + .+|+--|+-..-....=+.+... .-.+++ .-+.
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvp 95 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVP 95 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEE
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecC
Confidence 36899999999999887765432 1 26777886543222111111111 001222 2334
Q ss_pred cCCCCCCCCCCccceEEccccccCcCCH------------------------H---------------HHHHHHHHhcCC
Q 017428 215 GDALQQPFPDGQFDLVWSMESGEHMPDK------------------------S---------------KFVSELARVTAP 255 (371)
Q Consensus 215 ~d~~~~~~~~~~fD~v~~~~~l~~~~~~------------------------~---------------~~l~~~~~~Lkp 255 (371)
+.+..--+|+++.|++++..++|++... . .+|+.=.+=|+|
T Consensus 96 gSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~ 175 (334)
T PF03492_consen 96 GSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELVP 175 (334)
T ss_dssp S-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEEE
T ss_pred chhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheecc
Confidence 5555555889999999999999887321 0 122222445789
Q ss_pred CcEEEEEeccCCCCCcCcc---ccChHHHHHHHHHhhc----------cCCC-CCCCHHHHHHHHHhCC-CceEEEEecC
Q 017428 256 AGTIIIVTWCHRDLAPSEE---SLQPWEQELLKKICDA----------YYLP-AWCSTADYVKLLQSLS-LEDIKAEDWS 320 (371)
Q Consensus 256 gG~l~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~----------~~~~-~~~~~~~~~~ll~~aG-F~~v~~~~~~ 320 (371)
||++++.-.+.+...+... .+.......+...... +..| .+.+.+++++.+++.| |++..++.+.
T Consensus 176 GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~gsF~I~~le~~~ 255 (334)
T PF03492_consen 176 GGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEEGSFEIEKLELFE 255 (334)
T ss_dssp EEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHHTSEEEEEEEEEE
T ss_pred CcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcCCCEEEEEEEEEe
Confidence 9999999877665322211 1222233333332222 2223 2368999999998766 7766555554
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.044 Score=48.24 Aligned_cols=130 Identities=15% Similarity=0.100 Sum_probs=75.0
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C-CCCCccceEEcccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P-FPDGQFDLVWSMES 235 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~~~~~fD~v~~~~~ 235 (371)
+++||-+|=..- .++.++-.. ..+|+.+|+++..++..++.+++.|++ ++.+..|+.+. | .-.++||++++. -
T Consensus 45 gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~LP~~~~~~fD~f~TD-P 120 (243)
T PF01861_consen 45 GKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDPLPEELRGKFDVFFTD-P 120 (243)
T ss_dssp T-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---TTTSS-BSEEEE---
T ss_pred CCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccccCCHHHhcCCCEEEeC-C
Confidence 789999994432 333333322 789999999999999999999999984 99999999873 3 114889999864 2
Q ss_pred ccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEE
Q 017428 236 GEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIK 315 (371)
Q Consensus 236 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~ 315 (371)
-+.+.-..-++.+....||..|...+..++..... . . ..-++++.+.+.||.+.+
T Consensus 121 PyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s-----~-----~---------------~~~~~Q~~l~~~gl~i~d 175 (243)
T PF01861_consen 121 PYTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEAS-----P-----D---------------KWLEVQRFLLEMGLVITD 175 (243)
T ss_dssp -SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT-------H-----H---------------HHHHHHHHHHTS--EEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCCceEEEEEecCcCc-----H-----H---------------HHHHHHHHHHHCCcCHHH
Confidence 22333456789999999997775544444332110 0 0 112567788899999877
Q ss_pred EE
Q 017428 316 AE 317 (371)
Q Consensus 316 ~~ 317 (371)
+.
T Consensus 176 ii 177 (243)
T PF01861_consen 176 II 177 (243)
T ss_dssp EE
T ss_pred HH
Confidence 64
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.034 Score=50.34 Aligned_cols=171 Identities=15% Similarity=0.062 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcC--CCCCeEEE
Q 017428 136 AAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARG--LADKVSFQ 213 (371)
Q Consensus 136 ~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~ 213 (371)
....+.++..+....... ...|+.+|||--.-+..+....+..++=+|. |+.++.-++.+.+.+ .+.+..++
T Consensus 64 ~~Rtr~~D~~i~~~~~~g-----~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v 137 (260)
T TIGR00027 64 AVRTRFFDDFLLAAVAAG-----IRQVVILGAGLDTRAYRLPWPDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAV 137 (260)
T ss_pred HHHHHHHHHHHHHHHhcC-----CcEEEEeCCccccHHHhcCCCCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEe
Confidence 344556666665432221 3469999999876666553321345555565 556666666676543 24678899
Q ss_pred EcCCCCC--------CCCCCccceEEccccccCcCC--HHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHH
Q 017428 214 VGDALQQ--------PFPDGQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQEL 283 (371)
Q Consensus 214 ~~d~~~~--------~~~~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~ 283 (371)
..|+... .+..+.--++++-.++.+++. ...+++.+.+...||+.+++-.... ... ..........
T Consensus 138 ~~Dl~~~w~~~L~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~--~~~--~~~~~~~~~~ 213 (260)
T TIGR00027 138 PVDLRQDWPAALAAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRP--LDG--EWRAGMRAPV 213 (260)
T ss_pred ccCchhhHHHHHHhCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccc--cch--hHHHHHHHHH
Confidence 9998721 121223346677778888854 4688999998888988888754322 100 0000001111
Q ss_pred HHHH--hhccCCCCCCCHHHHHHHHHhCCCceEEE
Q 017428 284 LKKI--CDAYYLPAWCSTADYVKLLQSLSLEDIKA 316 (371)
Q Consensus 284 ~~~~--~~~~~~~~~~~~~~~~~ll~~aGF~~v~~ 316 (371)
.... .....+...++++++.++|.+.||.....
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gw~~~~~ 248 (260)
T TIGR00027 214 YHAARGVDGSGLVFGIDRADVAEWLAERGWRASEH 248 (260)
T ss_pred HHhhhcccccccccCCChhhHHHHHHHCCCeeecC
Confidence 1111 11122223468999999999999998654
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.012 Score=58.21 Aligned_cols=100 Identities=19% Similarity=0.306 Sum_probs=70.1
Q ss_pred CCCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-------------C-
Q 017428 157 KRPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-------------P- 221 (371)
Q Consensus 157 ~~~~~VLDlG~Gt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-------------~- 221 (371)
.++.+|+=+|+|. |..++..++.+|+.|+++|.+++-++.+++. | .++...|..+. .
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aesl----G----A~~v~i~~~e~~~~~~gya~~~s~~~ 234 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESM----G----AEFLELDFEEEGGSGDGYAKVMSEEF 234 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----C----CeEEEeccccccccccchhhhcchhH
Confidence 3589999999996 7778888888899999999999998888762 2 33332222110 0
Q ss_pred -------CCC--CccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 222 -------FPD--GQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 222 -------~~~--~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
+.+ ..+|+|+..-....-+.+..+.+++.+.+||||.++....
T Consensus 235 ~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 235 IKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 011 3589998765543333444446999999999999888654
|
|
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.039 Score=51.35 Aligned_cols=63 Identities=17% Similarity=0.197 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc---------CCEEEEEeCCHHHHHHHHHHHHHc
Q 017428 137 AQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF---------GAKCQGITLSPVQAQRANALAAAR 204 (371)
Q Consensus 137 ~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~---------~~~v~gvD~s~~~~~~a~~~~~~~ 204 (371)
..-..+.+++..++.+. +..++|+|.|+|.++..+++.. ..++..|++|++....-++.++..
T Consensus 61 lla~~~~~~wq~~g~p~-----~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 61 LLAEQFLQLWQELGRPA-----PLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred HHHHHHHHHHHHhcCCC-----CceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 33334445555555433 6789999999999999888754 368999999999988888877665
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.012 Score=54.21 Aligned_cols=106 Identities=20% Similarity=0.305 Sum_probs=67.1
Q ss_pred CCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC--CCCC-CCccceEEcc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ--QPFP-DGQFDLVWSM 233 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~-~~~fD~v~~~ 233 (371)
+.+|||+|.|.|.-+..+-..+ -..++.++.|+..-+.......... +....+...|+.. ++++ ...|++|+..
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~-t~~td~r~s~vt~dRl~lp~ad~ytl~i~~ 192 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVS-TEKTDWRASDVTEDRLSLPAADLYTLAIVL 192 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcc-cccCCCCCCccchhccCCCccceeehhhhh
Confidence 5789999999887766655444 2467778888866655554433222 1222233333322 1222 3567877776
Q ss_pred ccccCcCC---HHHHHHHHHHhcCCCcEEEEEecc
Q 017428 234 ESGEHMPD---KSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 234 ~~l~~~~~---~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
+-|-+..+ ....++.+..++.|||.|+|++.+
T Consensus 193 ~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErG 227 (484)
T COG5459 193 DELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERG 227 (484)
T ss_pred hhhccccCcchHHHHHHHHHHhccCCCeEEEEeCC
Confidence 65555533 245889999999999999999854
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.02 Score=53.24 Aligned_cols=94 Identities=21% Similarity=0.170 Sum_probs=66.4
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcC-CCCCCCCCCccceEEcccc
Q 017428 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD-ALQQPFPDGQFDLVWSMES 235 (371)
Q Consensus 158 ~~~~VLDlG~G-tG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d-~~~~~~~~~~fD~v~~~~~ 235 (371)
|+.+|+=+|+| .|..++.+++..+++|+++|.+++-.+.|++. | .-.++... ......-.+.||+|+..-.
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~l----G---Ad~~i~~~~~~~~~~~~~~~d~ii~tv~ 238 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKL----G---ADHVINSSDSDALEAVKEIADAIIDTVG 238 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHh----C---CcEEEEcCCchhhHHhHhhCcEEEECCC
Confidence 58999998887 45678888887799999999999999998874 2 12233322 1111111234999886532
Q ss_pred ccCcCCHHHHHHHHHHhcCCCcEEEEEecc
Q 017428 236 GEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 236 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
...+....+.|++||.++++-..
T Consensus 239 -------~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 239 -------PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred -------hhhHHHHHHHHhcCCEEEEECCC
Confidence 45678888999999999998754
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.019 Score=51.96 Aligned_cols=90 Identities=18% Similarity=0.187 Sum_probs=73.7
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (371)
++.+.+..+..++ +...+|.--|.|+.+..+.+++ ..+++|+|-++.+++.|++++...+ +++.+++..+.
T Consensus 11 Ll~E~i~~L~~~~-----~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~ 83 (314)
T COG0275 11 LLNEVVELLAPKP-----DGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFA 83 (314)
T ss_pred HHHHHHHhcccCC-----CcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHH
Confidence 5677777777665 7999999999999999999998 3679999999999999999998765 68999999877
Q ss_pred CCC-----CCCCccceEEcccccc
Q 017428 219 QQP-----FPDGQFDLVWSMESGE 237 (371)
Q Consensus 219 ~~~-----~~~~~fD~v~~~~~l~ 237 (371)
++. ...+.+|-|+.-..+.
T Consensus 84 ~l~~~l~~~~i~~vDGiL~DLGVS 107 (314)
T COG0275 84 NLAEALKELGIGKVDGILLDLGVS 107 (314)
T ss_pred HHHHHHHhcCCCceeEEEEeccCC
Confidence 652 2246788888765544
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0079 Score=57.30 Aligned_cols=101 Identities=18% Similarity=0.191 Sum_probs=77.8
Q ss_pred CCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCC-CeEEEEcCCCCCC-CCCCccceEEccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLAD-KVSFQVGDALQQP-FPDGQFDLVWSME 234 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~-~v~~~~~d~~~~~-~~~~~fD~v~~~~ 234 (371)
+.+|||.=+|+|.=++..+... ...|+.-|+|+..++..+++++.+++.+ .+++...|+..+- .....||+|=.-
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD- 128 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD- 128 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE--
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC-
Confidence 5689999999999999998885 3689999999999999999999999987 6888899986642 246889998543
Q ss_pred cccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 235 SGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 235 ~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
-+..+..++..+.+.++.||.|.++.
T Consensus 129 ---PfGSp~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 129 ---PFGSPAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp ----SS--HHHHHHHHHHEEEEEEEEEEE
T ss_pred ---CCCCccHhHHHHHHHhhcCCEEEEec
Confidence 33567889999999999999999975
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.076 Score=46.66 Aligned_cols=105 Identities=15% Similarity=0.192 Sum_probs=73.2
Q ss_pred CCEEEEECCCcChHHHHHHHHc-C----CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--CCCCCccc-eE
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-G----AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--PFPDGQFD-LV 230 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~----~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD-~v 230 (371)
+...+|+|+|+..-+..+.+.+ . .+++.||+|...++...+.+...-..-.+.-+.+|.+.. ..+..+-- .+
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl~~ 158 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRLFV 158 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEEEE
Confidence 7889999999999888887766 2 689999999999887666555443222355556665431 12223222 34
Q ss_pred EccccccCcC--CHHHHHHHHHHhcCCCcEEEEEe
Q 017428 231 WSMESGEHMP--DKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 231 ~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+...++..+. +...++..+...|+||-++++..
T Consensus 159 flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 159 FLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred EecccccCCChHHHHHHHHHHHhcCCCcceEEEec
Confidence 4456777773 34789999999999999998853
|
|
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.02 Score=55.47 Aligned_cols=124 Identities=16% Similarity=0.132 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHH---c--CCEEEEEeCCHHHHHHHHHHHHHcCCCCC
Q 017428 135 RAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKK---F--GAKCQGITLSPVQAQRANALAAARGLADK 209 (371)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~---~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~ 209 (371)
..-+......++++.+... .+....|+-+|+|-|-+.....+. . ..++++|+-.|.++-..+. .+...+..+
T Consensus 346 ~~Yq~Ai~~AL~Drvpd~~--a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~ 422 (649)
T KOG0822|consen 346 DQYQQAILKALLDRVPDES--AKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNR 422 (649)
T ss_pred HHHHHHHHHHHHhhCcccc--cCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCe
Confidence 3445566677777655443 112456889999999987655432 2 3579999999998877665 333456689
Q ss_pred eEEEEcCCCCCCCCCCccceEEccccccCcCCH---HHHHHHHHHhcCCCcEEEEE
Q 017428 210 VSFQVGDALQQPFPDGQFDLVWSMESGEHMPDK---SKFVSELARVTAPAGTIIIV 262 (371)
Q Consensus 210 v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~---~~~l~~~~~~LkpgG~l~i~ 262 (371)
|.++-.|+...+-|.++.|++++ ..|..+.|- .+.|.-+.+.|||+|+-+=.
T Consensus 423 Vtii~~DMR~w~ap~eq~DI~VS-ELLGSFGDNELSPECLDG~q~fLkpdgIsIP~ 477 (649)
T KOG0822|consen 423 VTIISSDMRKWNAPREQADIIVS-ELLGSFGDNELSPECLDGAQKFLKPDGISIPS 477 (649)
T ss_pred eEEEeccccccCCchhhccchHH-HhhccccCccCCHHHHHHHHhhcCCCceEccc
Confidence 99999999998755688997764 556666543 68999999999999876643
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.0047 Score=56.72 Aligned_cols=89 Identities=20% Similarity=0.195 Sum_probs=62.4
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (371)
++.++++.+...+ +..++|.--|.|+.+..+++.+ +++|+|+|-++.+++.|++++... .+++.++.+++.+
T Consensus 8 ll~Evl~~L~~~~-----~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~ 80 (310)
T PF01795_consen 8 LLKEVLEALNPKP-----GGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSN 80 (310)
T ss_dssp THHHHHHHHT--T-----T-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGG
T ss_pred cHHHHHHhhCcCC-----CceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHH
Confidence 5566777766554 8899999999999999999987 689999999999999998877543 4689999998877
Q ss_pred CC-----C-CCCccceEEccccc
Q 017428 220 QP-----F-PDGQFDLVWSMESG 236 (371)
Q Consensus 220 ~~-----~-~~~~fD~v~~~~~l 236 (371)
+. . ....+|.|++-..+
T Consensus 81 l~~~l~~~~~~~~~dgiL~DLGv 103 (310)
T PF01795_consen 81 LDEYLKELNGINKVDGILFDLGV 103 (310)
T ss_dssp HHHHHHHTTTTS-EEEEEEE-S-
T ss_pred HHHHHHHccCCCccCEEEEcccc
Confidence 53 2 33578888775443
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.018 Score=59.58 Aligned_cols=104 Identities=22% Similarity=0.262 Sum_probs=61.9
Q ss_pred CCEEEEECCCcChHHHHHHHHc-------------CCEEEEEeCCH---HHHHH-----------HHHHHHHc-----CC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-------------GAKCQGITLSP---VQAQR-----------ANALAAAR-----GL 206 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-------------~~~v~gvD~s~---~~~~~-----------a~~~~~~~-----~~ 206 (371)
.-+|||+|=|+|.......+.. ..+++++|..| +.+.. +++..+.+ |+
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 5899999999999766555332 13788999643 22222 22222221 11
Q ss_pred ------CC--CeEEEEcCCCCC-CCCCCccceEEcccccc-CcCCH--HHHHHHHHHhcCCCcEEEEE
Q 017428 207 ------AD--KVSFQVGDALQQ-PFPDGQFDLVWSMESGE-HMPDK--SKFVSELARVTAPAGTIIIV 262 (371)
Q Consensus 207 ------~~--~v~~~~~d~~~~-~~~~~~fD~v~~~~~l~-~~~~~--~~~l~~~~~~LkpgG~l~i~ 262 (371)
.+ ++.+..+|+.+. +--...||+|+.-..-- .-++. ..+|+.+.++++|||.+.-.
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~ 205 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATF 205 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEe
Confidence 01 234556776542 21125699998653221 11222 68999999999999988854
|
|
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.011 Score=55.76 Aligned_cols=74 Identities=15% Similarity=0.153 Sum_probs=57.5
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC-CCCccceEEc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF-PDGQFDLVWS 232 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~v~~ 232 (371)
...|||||+|||.++...++..+..|++++.-..|.+.|++...++|+.++|.++.---.+... +....|+++.
T Consensus 67 kv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~ 141 (636)
T KOG1501|consen 67 KVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVR 141 (636)
T ss_pred eEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhH
Confidence 4679999999999998887775567999999999999999999999999999887655444321 1233555543
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.025 Score=49.86 Aligned_cols=91 Identities=25% Similarity=0.305 Sum_probs=53.1
Q ss_pred HHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc---CC-----CCCeEEEEc
Q 017428 144 ETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR---GL-----ADKVSFQVG 215 (371)
Q Consensus 144 ~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~---~~-----~~~v~~~~~ 215 (371)
.+++..++++ ....+|||.-+|-|.-+..++.. |++|++++-||.+....+.-++.. .- ..+++++.+
T Consensus 64 ~l~kA~Glk~---~~~~~VLDaTaGLG~Da~vlA~~-G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~ 139 (234)
T PF04445_consen 64 PLAKAVGLKP---GMRPSVLDATAGLGRDAFVLASL-GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHG 139 (234)
T ss_dssp HHHHHTT-BT---TB---EEETT-TTSHHHHHHHHH-T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES
T ss_pred HHHHHhCCCC---CCCCEEEECCCcchHHHHHHHcc-CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcC
Confidence 3455566554 11248999999999999999864 899999999998876665443322 11 137899999
Q ss_pred CCCC-CCCCCCccceEEccccccC
Q 017428 216 DALQ-QPFPDGQFDLVWSMESGEH 238 (371)
Q Consensus 216 d~~~-~~~~~~~fD~v~~~~~l~~ 238 (371)
|..+ +..++++||+|++--++.+
T Consensus 140 d~~~~L~~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 140 DALEYLRQPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp -CCCHCCCHSS--SEEEE--S---
T ss_pred CHHHHHhhcCCCCCEEEECCCCCC
Confidence 9877 3455789999998777655
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.011 Score=51.05 Aligned_cols=94 Identities=22% Similarity=0.291 Sum_probs=69.3
Q ss_pred CCEEEEECCCcChHHHHHHHHc-C------C---EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-------
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-G------A---KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP------- 221 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~------~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------- 221 (371)
-.+|+|+.+..|.|+..+.+++ . . .|++||+.+.. . + +.|.-+++|+....
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-P----------I-~GV~qlq~DIT~~stae~Ii~ 109 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-P----------I-EGVIQLQGDITSASTAEAIIE 109 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-c----------c-CceEEeecccCCHhHHHHHHH
Confidence 4689999999999999999876 2 1 39999997632 1 2 56888999998752
Q ss_pred -CCCCccceEEcccc-----ccCcCCH------HHHHHHHHHhcCCCcEEEEEec
Q 017428 222 -FPDGQFDLVWSMES-----GEHMPDK------SKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 222 -~~~~~fD~v~~~~~-----l~~~~~~------~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
|..++.|+|+|-.+ +|.+.+. ..+|.-...+|||||.++.--+
T Consensus 110 hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKif 164 (294)
T KOG1099|consen 110 HFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIF 164 (294)
T ss_pred HhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhh
Confidence 55678999998643 4444322 3456667789999999987543
|
|
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.11 Score=51.50 Aligned_cols=106 Identities=22% Similarity=0.292 Sum_probs=77.2
Q ss_pred CCEEEEECCCcChHHHHHHHHcC-----CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC-----CCCccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFG-----AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF-----PDGQFD 228 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~-----~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----~~~~fD 228 (371)
..+|.|..||+|.+.....+.++ ..++|.|+.+.....|+.+.--+|+..++....+|-...|. ..+.||
T Consensus 187 ~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~~D 266 (489)
T COG0286 187 RNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKGKFD 266 (489)
T ss_pred CCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcccccCCcccee
Confidence 66999999999998887777652 56999999999999999998877775445666666544442 236699
Q ss_pred eEEcccccc--------------------C-c---CCH-HHHHHHHHHhcCCCcEEEEEec
Q 017428 229 LVWSMESGE--------------------H-M---PDK-SKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 229 ~v~~~~~l~--------------------~-~---~~~-~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
+|+++--+. . + ... ..+++.+...|+|||+..|+..
T Consensus 267 ~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~ 327 (489)
T COG0286 267 FVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLP 327 (489)
T ss_pred EEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEec
Confidence 988753332 0 0 011 5789999999999997766653
|
|
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.059 Score=46.38 Aligned_cols=121 Identities=13% Similarity=0.106 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHHc----------
Q 017428 138 QVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG---AKCQGITLSPVQAQRANALAAAR---------- 204 (371)
Q Consensus 138 ~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~---~~v~gvD~s~~~~~~a~~~~~~~---------- 204 (371)
...++++.+..+.-+ .+.++-|-.||.|.+...+.-.++ ..|+|-|+++.+++.|++++.-.
T Consensus 36 AsEi~qR~l~~l~~~-----~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~ 110 (246)
T PF11599_consen 36 ASEIFQRALHYLEGK-----GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARRE 110 (246)
T ss_dssp HHHHHHHHHCTSSS------S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCC-----CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHH
Confidence 334555555444332 378999999999999887765542 57999999999999988765321
Q ss_pred -------------------------------CCCCCeEEEEcCCCCCC-----CCCCccceEEccccccCcCCH------
Q 017428 205 -------------------------------GLADKVSFQVGDALQQP-----FPDGQFDLVWSMESGEHMPDK------ 242 (371)
Q Consensus 205 -------------------------------~~~~~v~~~~~d~~~~~-----~~~~~fD~v~~~~~l~~~~~~------ 242 (371)
|-.....+...|+.+.. ......|+|+.-.-..++.+|
T Consensus 111 eL~~~~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~ 190 (246)
T PF11599_consen 111 ELRELYEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSG 190 (246)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---H
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCC
Confidence 11233778888888731 112336999886555555443
Q ss_pred ---HHHHHHHHHhcCCCcEEEEEe
Q 017428 243 ---SKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 243 ---~~~l~~~~~~LkpgG~l~i~~ 263 (371)
..++..++.+|-.++++.+++
T Consensus 191 ~p~~~ml~~l~~vLp~~sVV~v~~ 214 (246)
T PF11599_consen 191 GPVAQMLNSLAPVLPERSVVAVSD 214 (246)
T ss_dssp HHHHHHHHHHHCCS-TT-EEEEEE
T ss_pred CcHHHHHHHHHhhCCCCcEEEEec
Confidence 479999999995555555543
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.034 Score=48.28 Aligned_cols=82 Identities=13% Similarity=0.223 Sum_probs=56.6
Q ss_pred CCCCEEEEECCCcChHHHHH-HHHcCCEEEEEeCCHHHHHHHHHHHHHc-CCCCCeEEEEcCCCC-C----CCCCCccce
Q 017428 157 KRPKNVVDVGCGIGGSSRYL-AKKFGAKCQGITLSPVQAQRANALAAAR-GLADKVSFQVGDALQ-Q----PFPDGQFDL 229 (371)
Q Consensus 157 ~~~~~VLDlG~GtG~~~~~l-~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~~~~~v~~~~~d~~~-~----~~~~~~fD~ 229 (371)
.+..++||||.|..-.=-.+ ...++.+.+|.|+++..++.|+..+..+ ++...+++....-.+ + .-.++.||+
T Consensus 77 ~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~ 156 (292)
T COG3129 77 GKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDA 156 (292)
T ss_pred cCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeee
Confidence 35789999998864322122 2234789999999999999999998877 665556665433211 1 112688999
Q ss_pred EEccccccC
Q 017428 230 VWSMESGEH 238 (371)
Q Consensus 230 v~~~~~l~~ 238 (371)
+.|+--+|.
T Consensus 157 tlCNPPFh~ 165 (292)
T COG3129 157 TLCNPPFHD 165 (292)
T ss_pred EecCCCcch
Confidence 999877764
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.082 Score=50.81 Aligned_cols=100 Identities=19% Similarity=0.173 Sum_probs=68.0
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-C-----CC-CCCccc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-Q-----PF-PDGQFD 228 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~-----~~-~~~~fD 228 (371)
++.+||.+|||. |..+..+++..+. +++++|.+++..+.+++.. + +.++...-.+ . .+ ....+|
T Consensus 184 ~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---~----~~vi~~~~~~~~~~~l~~~~~~~~~D 256 (386)
T cd08283 184 PGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---G----AETINFEEVDDVVEALRELTGGRGPD 256 (386)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---C----cEEEcCCcchHHHHHHHHHcCCCCCC
Confidence 478999999988 8888889888776 6999999999988887641 1 2222111111 0 11 223689
Q ss_pred eEEcccc---------------ccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 229 LVWSMES---------------GEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 229 ~v~~~~~---------------l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
+|+-.-. +.-..+....+.++.+.|+|+|.+++...
T Consensus 257 ~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 257 VCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred EEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence 8876421 11114456788999999999999998753
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.031 Score=50.36 Aligned_cols=45 Identities=20% Similarity=0.398 Sum_probs=36.3
Q ss_pred CCEEEEECCCcChHHHHHHHHc-C--------CEEEEEeCCHHHHHHHHHHHHH
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-G--------AKCQGITLSPVQAQRANALAAA 203 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~--------~~v~gvD~s~~~~~~a~~~~~~ 203 (371)
+.+|+|+|+|+|.++..+++.+ . .+++.||+|+.+.+..++++..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 4799999999999999998865 1 4899999999998888888755
|
; PDB: 4F3N_A 1ZKD_B. |
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.025 Score=50.98 Aligned_cols=106 Identities=18% Similarity=0.223 Sum_probs=78.2
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcC--C-CCCeEEEEcCCCCC--CCCCCccceEEc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARG--L-ADKVSFQVGDALQQ--PFPDGQFDLVWS 232 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~~--~~~~~~fD~v~~ 232 (371)
+++||-||.|.|.+....+++- -..+.-+|++...++..++.+...- . .+++.+..+|...+ ....++||+|+.
T Consensus 122 pkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii~ 201 (337)
T KOG1562|consen 122 PKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVIIT 201 (337)
T ss_pred CCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEEEE
Confidence 7899999999999988877753 2478899999999988888766542 1 25788888886553 244689999986
Q ss_pred cccccCcC--C--HHHHHHHHHHhcCCCcEEEEEec
Q 017428 233 MESGEHMP--D--KSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 233 ~~~l~~~~--~--~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
--.=.-.+ . .+.+++-+.+.||+||++++..-
T Consensus 202 dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~e 237 (337)
T KOG1562|consen 202 DSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGE 237 (337)
T ss_pred ecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecc
Confidence 32111111 1 25788899999999999999763
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.083 Score=49.80 Aligned_cols=97 Identities=23% Similarity=0.233 Sum_probs=61.0
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES 235 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~ 235 (371)
++.+||=.|+|. |..+..+++..++ +|+++|.+++.++.+++ .|...-+.....++.+.....+.+|+|+-.-.
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G 244 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE----MGADKLVNPQNDDLDHYKAEKGYFDVSFEVSG 244 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH----cCCcEEecCCcccHHHHhccCCCCCEEEECCC
Confidence 478899898863 6677777777676 69999999998887765 23210011111111111111235888874321
Q ss_pred ccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 236 GEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 236 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
. ...+..+.+.|++||.+++...
T Consensus 245 -----~-~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 245 -----H-PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred -----C-HHHHHHHHHHhhcCCEEEEEcc
Confidence 2 2467788899999999998764
|
|
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.073 Score=49.61 Aligned_cols=100 Identities=17% Similarity=0.138 Sum_probs=78.4
Q ss_pred CCEEEEECCCcChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC-CCccceEEccccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP-DGQFDLVWSMESG 236 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~v~~~~~l 236 (371)
+.+|||.=+|||.=++.++...+. +|+.-|+||...+.+++++..+.. .+...+..|+..+-.. ...||+|=.-
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~-~~~~v~n~DAN~lm~~~~~~fd~IDiD--- 128 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSG-EDAEVINKDANALLHELHRAFDVIDID--- 128 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCc-ccceeecchHHHHHHhcCCCccEEecC---
Confidence 578999999999999999988754 899999999999999999988732 3555566776554221 3678877432
Q ss_pred cCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 237 EHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 237 ~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
-+..+..++..+.+.++.||.|.++-
T Consensus 129 -PFGSPaPFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 129 -PFGSPAPFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred -CCCCCchHHHHHHHHhhcCCEEEEEe
Confidence 33466788999999999999999965
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.066 Score=52.87 Aligned_cols=97 Identities=18% Similarity=0.277 Sum_probs=67.5
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-------------C--
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-------------P-- 221 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-------------~-- 221 (371)
++.+||=+|+|. |..+..++...|+.|+++|.++..++.++. .| .+++..|..+. +
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~----lG----a~~v~v~~~e~g~~~~gYa~~~s~~~~ 234 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS----MG----AEFLELDFKEEGGSGDGYAKVMSEEFI 234 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cC----CeEEeccccccccccccceeecCHHHH
Confidence 478999999996 667777777778999999999998777665 22 33433333110 0
Q ss_pred ------CC--CCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEE
Q 017428 222 ------FP--DGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262 (371)
Q Consensus 222 ------~~--~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 262 (371)
+. -..+|+|+..-.+..-+.+.-+.+++.+.+|||+.++-.
T Consensus 235 ~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDl 283 (511)
T TIGR00561 235 AAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDL 283 (511)
T ss_pred HHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEe
Confidence 11 245999987665554445555788899999999987643
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.018 Score=51.79 Aligned_cols=105 Identities=12% Similarity=0.106 Sum_probs=63.3
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHH-------HHH--HcCCCCCeEEEEcCCCCCCC-CCC--c
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANA-------LAA--ARGLADKVSFQVGDALQQPF-PDG--Q 226 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~-------~~~--~~~~~~~v~~~~~d~~~~~~-~~~--~ 226 (371)
+++|||+|||.|...+.........+...|++...++...- .+. ......-..+...+..+..+ ..+ .
T Consensus 117 ~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~~~~ 196 (282)
T KOG2920|consen 117 GKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTERTH 196 (282)
T ss_pred CceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhccccc
Confidence 78999999999999998877633678888888776632110 000 00000001111110001111 123 7
Q ss_pred cceEEccccccCcCCHHHH-HHHHHHhcCCCcEEEEEe
Q 017428 227 FDLVWSMESGEHMPDKSKF-VSELARVTAPAGTIIIVT 263 (371)
Q Consensus 227 fD~v~~~~~l~~~~~~~~~-l~~~~~~LkpgG~l~i~~ 263 (371)
||+|.+..+++.......+ ......+++++|.++++-
T Consensus 197 ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~aA 234 (282)
T KOG2920|consen 197 YDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVAA 234 (282)
T ss_pred hhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhhhh
Confidence 9999999998887776655 566667778888887753
|
|
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.019 Score=55.21 Aligned_cols=102 Identities=18% Similarity=0.177 Sum_probs=83.2
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-C-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC----CCCCCccceEE
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF-G-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ----PFPDGQFDLVW 231 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~-~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~fD~v~ 231 (371)
++.+|||.=|++|.-++..+... + .+|++-|.++..++..+++++-+++.+.++....|+..+ +-....||+|-
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvID 188 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVID 188 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceEe
Confidence 46899999999999999999887 2 579999999999999999998888777777788887654 22357899986
Q ss_pred ccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 232 SMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 232 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
.- -+..+..+|..+.+.++.||.|+++.
T Consensus 189 LD----PyGs~s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 189 LD----PYGSPSPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred cC----CCCCccHHHHHHHHHhhcCCEEEEEe
Confidence 43 22345688999999999999999965
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.25 Score=46.86 Aligned_cols=96 Identities=21% Similarity=0.216 Sum_probs=67.8
Q ss_pred CCEEEEECCCc-ChHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC------CCCC-Cccce
Q 017428 159 PKNVVDVGCGI-GGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ------PFPD-GQFDL 229 (371)
Q Consensus 159 ~~~VLDlG~Gt-G~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~-~~fD~ 229 (371)
+.+|+=+|||. |.++..+++.++ .+|+.+|.++.-++.|++... .........+. .... ..+|+
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g-------~~~~~~~~~~~~~~~~~~~t~g~g~D~ 241 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGG-------ADVVVNPSEDDAGAEILELTGGRGADV 241 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCC-------CeEeecCccccHHHHHHHHhCCCCCCE
Confidence 44999999997 888888888774 689999999999999987531 22222221110 1112 36999
Q ss_pred EEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCC
Q 017428 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHR 267 (371)
Q Consensus 230 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 267 (371)
++-.-. ....+..+.++++|||.+.+.-....
T Consensus 242 vie~~G------~~~~~~~ai~~~r~gG~v~~vGv~~~ 273 (350)
T COG1063 242 VIEAVG------SPPALDQALEALRPGGTVVVVGVYGG 273 (350)
T ss_pred EEECCC------CHHHHHHHHHHhcCCCEEEEEeccCC
Confidence 885543 23578899999999999999876543
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.063 Score=47.55 Aligned_cols=52 Identities=17% Similarity=0.351 Sum_probs=33.6
Q ss_pred EEEEcCCCCC--CCCCCccceEEccccc----cC-----c-----CC-HHHHHHHHHHhcCCCcEEEEE
Q 017428 211 SFQVGDALQQ--PFPDGQFDLVWSMESG----EH-----M-----PD-KSKFVSELARVTAPAGTIIIV 262 (371)
Q Consensus 211 ~~~~~d~~~~--~~~~~~fD~v~~~~~l----~~-----~-----~~-~~~~l~~~~~~LkpgG~l~i~ 262 (371)
+++.+|..+. .++++++|+|+..--. .. + .+ ...++.+++|+|||||.+++.
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if 71 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSF 71 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 4566776553 4667888888764111 00 0 01 257889999999999988763
|
|
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.14 Score=43.28 Aligned_cols=105 Identities=18% Similarity=0.264 Sum_probs=74.7
Q ss_pred CCEEEEECCCcChHHHHHHHHc---C--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-------CCCCc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---G--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-------FPDGQ 226 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-------~~~~~ 226 (371)
+..|+|+|.-.|+.++..|... | .+|+++|++-..++-+... . ++|.|+.++-.++. ...+.
T Consensus 70 P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~-p~i~f~egss~dpai~eqi~~~~~~y 143 (237)
T COG3510 70 PSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----V-PDILFIEGSSTDPAIAEQIRRLKNEY 143 (237)
T ss_pred CceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----C-CCeEEEeCCCCCHHHHHHHHHHhcCC
Confidence 6889999999999888887644 4 7899999987664433221 2 58999999987753 12222
Q ss_pred cceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCC
Q 017428 227 FDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDL 269 (371)
Q Consensus 227 fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~ 269 (371)
--+.++..+-|+....-+.++-..++|.-|-++++.+..-++.
T Consensus 144 ~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~dl 186 (237)
T COG3510 144 PKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVNDL 186 (237)
T ss_pred CcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccccCC
Confidence 2334455666666666777888889999999999987554443
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.32 Score=44.70 Aligned_cols=96 Identities=17% Similarity=0.214 Sum_probs=67.5
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC--CC---------CCCC
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL--QQ---------PFPD 224 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~--~~---------~~~~ 224 (371)
++.+||-+|+|. |..+...++.+| .+|+.+|+++.-++.|++ + |. +.+.-+.. .. .+..
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~---Ga----~~~~~~~~~~~~~~~~~~v~~~~g~ 240 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-F---GA----TVTDPSSHKSSPQELAELVEKALGK 240 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-h---CC----eEEeeccccccHHHHHHHHHhhccc
Confidence 489999999996 777888888775 689999999999999998 2 22 11111111 11 1223
Q ss_pred CccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCC
Q 017428 225 GQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHR 267 (371)
Q Consensus 225 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 267 (371)
..+|+.+-+..+ +..++.+...+++||.++++.+...
T Consensus 241 ~~~d~~~dCsG~------~~~~~aai~a~r~gGt~vlvg~g~~ 277 (354)
T KOG0024|consen 241 KQPDVTFDCSGA------EVTIRAAIKATRSGGTVVLVGMGAE 277 (354)
T ss_pred cCCCeEEEccCc------hHHHHHHHHHhccCCEEEEeccCCC
Confidence 458888766443 3456777889999999988887654
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.11 Score=47.79 Aligned_cols=58 Identities=12% Similarity=0.042 Sum_probs=47.7
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHH
Q 017428 139 VRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAA 203 (371)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~ 203 (371)
..++++++....- ++..|||.=+|+|..+....+. +-+++|+|++++.++.|++++..
T Consensus 195 ~~L~erlI~~~S~------~GD~VLDPF~GSGTT~~AA~~l-gR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 195 EALLKRIILASSN------PGDIVLDPFAGSFTTGAVAKAS-GRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHHHhCC------CCCEEEECCCCCcHHHHHHHHc-CCCEEEEeCCHHHHHHHHHHHHh
Confidence 4466777766542 4899999999999988776664 88999999999999999999854
|
|
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.41 Score=44.60 Aligned_cols=93 Identities=18% Similarity=0.313 Sum_probs=63.7
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC------CCCCCccceE
Q 017428 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ------PFPDGQFDLV 230 (371)
Q Consensus 158 ~~~~VLDlG~G-tG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~fD~v 230 (371)
++.+||..|+| .|..+..+++..+.+|++++.++...+.+++ .++ ..+..+-... ......+|+|
T Consensus 165 ~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~----~g~----~~~~~~~~~~~~~~~~~~~~~~~D~v 236 (338)
T cd08254 165 PGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE----LGA----DEVLNSLDDSPKDKKAAGLGGGFDVI 236 (338)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH----hCC----CEEEcCCCcCHHHHHHHhcCCCceEE
Confidence 47889998876 4778888888878899999999998887754 232 1222211111 1234568988
Q ss_pred EccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
+.... ....++++.+.|+++|.++....
T Consensus 237 id~~g------~~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 237 FDFVG------TQPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred EECCC------CHHHHHHHHHHhhcCCEEEEECC
Confidence 74321 13578889999999999998754
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.44 Score=44.60 Aligned_cols=110 Identities=15% Similarity=0.112 Sum_probs=75.0
Q ss_pred CCCCEEEEECCCcChHHHHHHHHc-CC----EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---------C
Q 017428 157 KRPKNVVDVGCGIGGSSRYLAKKF-GA----KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---------F 222 (371)
Q Consensus 157 ~~~~~VLDlG~GtG~~~~~l~~~~-~~----~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---------~ 222 (371)
.|+.+|||+.+-.|.-+..+.+.. .. .|++-|.++.-+...........- +++.+...|+...| .
T Consensus 154 ~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~-~~~~v~~~~~~~~p~~~~~~~~~~ 232 (375)
T KOG2198|consen 154 KPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPS-PNLLVTNHDASLFPNIYLKDGNDK 232 (375)
T ss_pred CCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCC-cceeeecccceeccccccccCchh
Confidence 469999999999999998888876 23 799999999877777766644322 34555555544332 1
Q ss_pred CCCccceEEcc------ccccCcCCH-----------------HHHHHHHHHhcCCCcEEEEEeccCC
Q 017428 223 PDGQFDLVWSM------ESGEHMPDK-----------------SKFVSELARVTAPAGTIIIVTWCHR 267 (371)
Q Consensus 223 ~~~~fD~v~~~------~~l~~~~~~-----------------~~~l~~~~~~LkpgG~l~i~~~~~~ 267 (371)
....||-|++- .++.+..+. ..++.+..++||+||.|+..+.+..
T Consensus 233 ~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLn 300 (375)
T KOG2198|consen 233 EQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLN 300 (375)
T ss_pred hhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCC
Confidence 33569998862 112221111 2578888999999999999886543
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.12 Score=45.34 Aligned_cols=97 Identities=14% Similarity=0.174 Sum_probs=68.3
Q ss_pred CCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHH----HHHHHHHHHHcCCCCCeEEEEcCCCCCC---CCCCcc
Q 017428 157 KRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQ----AQRANALAAARGLADKVSFQVGDALQQP---FPDGQF 227 (371)
Q Consensus 157 ~~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~----~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~f 227 (371)
.|+.+||-+|+++|.....+.+-. ...|++|+.|... +..|+++ +||--++.|+.... ..-.-.
T Consensus 155 kpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR-------tNiiPIiEDArhP~KYRmlVgmV 227 (317)
T KOG1596|consen 155 KPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR-------TNIIPIIEDARHPAKYRMLVGMV 227 (317)
T ss_pred cCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc-------CCceeeeccCCCchheeeeeeeE
Confidence 459999999999999988888866 3579999998753 3344432 57888888887642 112356
Q ss_pred ceEEccccccCcCCH-HHHHHHHHHhcCCCcEEEEEe
Q 017428 228 DLVWSMESGEHMPDK-SKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 228 D~v~~~~~l~~~~~~-~~~l~~~~~~LkpgG~l~i~~ 263 (371)
|+|++.-. -+|. ..+.-++...||+||.++|..
T Consensus 228 DvIFaDva---qpdq~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 228 DVIFADVA---QPDQARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred EEEeccCC---CchhhhhhhhhhhhhhccCCeEEEEE
Confidence 77765321 1343 344568888999999999875
|
|
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.2 Score=39.43 Aligned_cols=46 Identities=13% Similarity=0.088 Sum_probs=40.4
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR 204 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~ 204 (371)
+.+|+|||++-|..++.++-+....|+++++++...+..++.++..
T Consensus 29 ~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~n 74 (156)
T PHA01634 29 QRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYF 74 (156)
T ss_pred CCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhh
Confidence 7899999999999999998874457999999999999998877654
|
|
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.47 Score=39.77 Aligned_cols=135 Identities=14% Similarity=0.072 Sum_probs=81.5
Q ss_pred ECCCcChHHHHHHHHc--CCEEEEEeCC--HHHHHHH---HHHHHHcCCCCCeEEEEcCCCCCC----CCCCccceEEcc
Q 017428 165 VGCGIGGSSRYLAKKF--GAKCQGITLS--PVQAQRA---NALAAARGLADKVSFQVGDALQQP----FPDGQFDLVWSM 233 (371)
Q Consensus 165 lG~GtG~~~~~l~~~~--~~~v~gvD~s--~~~~~~a---~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~v~~~ 233 (371)
||=|.=.++..|++.+ +..+++.-+. .+..+.. ..++....-.+-.-....|+.++. ...+.||.|+.+
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN 82 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN 82 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence 5666666788888876 3456665444 3332221 122222211111234566777763 256889999987
Q ss_pred ccccC--cC----C-------HHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHH
Q 017428 234 ESGEH--MP----D-------KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTA 300 (371)
Q Consensus 234 ~~l~~--~~----~-------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (371)
+-... .. + ...+++.+..+|+++|.+.|+-..... ++.=
T Consensus 83 FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p----------------------------y~~W 134 (166)
T PF10354_consen 83 FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP----------------------------YDSW 134 (166)
T ss_pred CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC----------------------------Cccc
Confidence 54322 00 1 247899999999999999998643211 1122
Q ss_pred HHHHHHHhCCCceEEEEecCCcccCcc
Q 017428 301 DYVKLLQSLSLEDIKAEDWSQNVAPFW 327 (371)
Q Consensus 301 ~~~~ll~~aGF~~v~~~~~~~~~~~~~ 327 (371)
++.++.+++||..++...+.....|.|
T Consensus 135 ~i~~lA~~~gl~l~~~~~F~~~~ypgY 161 (166)
T PF10354_consen 135 NIEELAAEAGLVLVRKVPFDPSDYPGY 161 (166)
T ss_pred cHHHHHHhcCCEEEEEecCCHHHCCCc
Confidence 366888999999999888776654433
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.11 Score=45.43 Aligned_cols=54 Identities=20% Similarity=0.237 Sum_probs=40.7
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Q 017428 139 VRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANA 199 (371)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~ 199 (371)
..++++++....- ++..|||.=||+|..+....+. +.+.+|+|+++...+.|++
T Consensus 178 ~~l~~~lI~~~t~------~gdiVlDpF~GSGTT~~aa~~l-~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 178 VELIERLIKASTN------PGDIVLDPFAGSGTTAVAAEEL-GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHHHS-------TT-EEEETT-TTTHHHHHHHHT-T-EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHhhhc------cceeeehhhhccChHHHHHHHc-CCeEEEEeCCHHHHHHhcC
Confidence 3466677765542 4899999999999998877664 8899999999999998864
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.23 Score=43.97 Aligned_cols=58 Identities=17% Similarity=0.108 Sum_probs=46.3
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc
Q 017428 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR 204 (371)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~ 204 (371)
.+++.++..... ++..|||.=||+|..+....+. +.+++|+|+++...+.+.++++..
T Consensus 151 ~l~~~~i~~~s~------~g~~vlDpf~Gsgtt~~aa~~~-~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 151 TSLQPLIESFTH------PNAIVLDPFAGSGSTCVAALQS-GRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred HHHHHHHHHhCC------CCCEEEeCCCCCCHHHHHHHHc-CCCEEEEecCHHHHHHHHHHHHHH
Confidence 355555554432 4889999999999998877664 889999999999999999988664
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.8 Score=42.91 Aligned_cols=90 Identities=18% Similarity=0.147 Sum_probs=60.2
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccc
Q 017428 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (371)
Q Consensus 158 ~~~~VLDlG~G-tG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l 236 (371)
++.+||=.|+| .|..+..+++..+++|++++.++.-.+.+++ .|.. .+ .|..+. ..+.+|+++.....
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~----~Ga~----~v-i~~~~~--~~~~~d~~i~~~~~ 233 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALA----LGAA----SA-GGAYDT--PPEPLDAAILFAPA 233 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH----hCCc----ee-cccccc--CcccceEEEECCCc
Confidence 48899999975 3556677777778899999999888777665 3431 11 121111 12457876543321
Q ss_pred cCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 237 EHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 237 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
...+....+.|++||.+++.-.
T Consensus 234 ------~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 234 ------GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred ------HHHHHHHHHhhCCCcEEEEEec
Confidence 2468889999999999988764
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.13 Score=47.00 Aligned_cols=107 Identities=19% Similarity=0.237 Sum_probs=72.4
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--------C-------------CEEEEEeCCHH--HHHHHHHHHHHc----------
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF--------G-------------AKCQGITLSPV--QAQRANALAAAR---------- 204 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~--------~-------------~~v~gvD~s~~--~~~~a~~~~~~~---------- 204 (371)
+..+||-||.|.|.-...++..+ . ..|+.||+.+- .+......+...
T Consensus 86 ~~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~ 165 (315)
T PF11312_consen 86 KSLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAA 165 (315)
T ss_pred cCceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccc
Confidence 35799999999988666555443 0 27999998754 333333322222
Q ss_pred ---CC-C--CCeEEEEcCCCCCCCC-------CCccceEEccccccCc-----CCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 205 ---GL-A--DKVSFQVGDALQQPFP-------DGQFDLVWSMESGEHM-----PDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 205 ---~~-~--~~v~~~~~d~~~~~~~-------~~~fD~v~~~~~l~~~-----~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
.. + -++.|.+.|+.....+ ....|+|...+++..+ ..-.++|.++...++||-.|+|+|.
T Consensus 166 ~~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDS 243 (315)
T PF11312_consen 166 NWPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDS 243 (315)
T ss_pred ccccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcC
Confidence 00 1 1578999999886422 1357888877766544 3447899999999999999999984
|
|
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.18 Score=40.00 Aligned_cols=86 Identities=21% Similarity=0.167 Sum_probs=60.1
Q ss_pred CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----C-CCCCccceEEccccccCcCC
Q 017428 168 GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-----P-FPDGQFDLVWSMESGEHMPD 241 (371)
Q Consensus 168 GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~-~~~~~fD~v~~~~~l~~~~~ 241 (371)
|.|..+..+++..|++|+++|.++.-.+.+++ .|. -.++..+-.+. . .....+|+|+-+-.
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~----~Ga---~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g------ 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKE----LGA---DHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG------ 67 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH----TTE---SEEEETTTSSHHHHHHHHTTTSSEEEEEESSS------
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHh----hcc---cccccccccccccccccccccccceEEEEecC------
Confidence 45888999999889999999999998888776 331 12222222211 1 23357999875422
Q ss_pred HHHHHHHHHHhcCCCcEEEEEeccC
Q 017428 242 KSKFVSELARVTAPAGTIIIVTWCH 266 (371)
Q Consensus 242 ~~~~l~~~~~~LkpgG~l~i~~~~~ 266 (371)
....++....+|+|+|.++++....
T Consensus 68 ~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 68 SGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp SHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred cHHHHHHHHHHhccCCEEEEEEccC
Confidence 2468899999999999999987543
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.36 Score=46.56 Aligned_cols=100 Identities=16% Similarity=0.152 Sum_probs=64.6
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~Gt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (371)
.++.+++..++. .++.+|+=+|+|. |......++.+|++|+++|.++.-.+.|+. .| .... +..+
T Consensus 188 ~~~~i~r~t~~~----l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~----~G----~~~~--~~~e 253 (413)
T cd00401 188 LIDGIKRATDVM----IAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAM----EG----YEVM--TMEE 253 (413)
T ss_pred hHHHHHHhcCCC----CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHh----cC----CEEc--cHHH
Confidence 455566554432 2489999999996 656666666668999999999987776654 23 2222 1111
Q ss_pred CCCCCCccceEEccccccCcCCHHHHHHH-HHHhcCCCcEEEEEe
Q 017428 220 QPFPDGQFDLVWSMESGEHMPDKSKFVSE-LARVTAPAGTIIIVT 263 (371)
Q Consensus 220 ~~~~~~~fD~v~~~~~l~~~~~~~~~l~~-~~~~LkpgG~l~i~~ 263 (371)
. . ..+|+|+..- ... .++.. ..+.+|+||.++.+.
T Consensus 254 ~-v--~~aDVVI~at-----G~~-~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 254 A-V--KEGDIFVTTT-----GNK-DIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred H-H--cCCCEEEECC-----CCH-HHHHHHHHhcCCCCcEEEEeC
Confidence 1 1 3479887642 233 34544 589999999998775
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.35 Score=45.74 Aligned_cols=92 Identities=20% Similarity=0.279 Sum_probs=59.9
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeC---CHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----CCCCccce
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITL---SPVQAQRANALAAARGLADKVSFQVGDALQQP----FPDGQFDL 229 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~~v~gvD~---s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~ 229 (371)
++.+||=+|+|. |..+..+++..+++|++++. ++.-.+.+++ .|. .++ +..+.. ...+.+|+
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~----~Ga----~~v--~~~~~~~~~~~~~~~~d~ 241 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEE----LGA----TYV--NSSKTPVAEVKLVGEFDL 241 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH----cCC----EEe--cCCccchhhhhhcCCCCE
Confidence 478899999874 66777788877889999987 5666665543 332 222 211111 01245888
Q ss_pred EEccccccCcCCHHHHHHHHHHhcCCCcEEEEEecc
Q 017428 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 230 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
|+-.-. . ...+..+.+.|++||.+++....
T Consensus 242 vid~~g-----~-~~~~~~~~~~l~~~G~~v~~G~~ 271 (355)
T cd08230 242 IIEATG-----V-PPLAFEALPALAPNGVVILFGVP 271 (355)
T ss_pred EEECcC-----C-HHHHHHHHHHccCCcEEEEEecC
Confidence 875432 1 23678889999999999887643
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=93.85 E-value=1.2 Score=41.17 Aligned_cols=174 Identities=16% Similarity=0.099 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCC--CCCeEE
Q 017428 135 RAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGL--ADKVSF 212 (371)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~~~v~~ 212 (371)
.....++++..+...-... -..|+-+|||--.-+-.+-...+.+|+-+|. |+.++.=++.++..+. |..+++
T Consensus 74 ~a~Rtr~fD~~~~~~~~~g-----~~qvViLgaGLDTRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~ 147 (297)
T COG3315 74 LAARTRYFDDFVRAALDAG-----IRQVVILGAGLDTRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRL 147 (297)
T ss_pred HHHHHHHHHHHHHHHHHhc-----ccEEEEeccccccceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEE
Confidence 4455566776665433221 4679999998644333332211456777777 6666666666666542 337899
Q ss_pred EEcCCCCCC----CC-----CCccceEEccccccCcCC--HHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHH
Q 017428 213 QVGDALQQP----FP-----DGQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQ 281 (371)
Q Consensus 213 ~~~d~~~~~----~~-----~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~ 281 (371)
+..|+.+.. +. .+.--++++-+++.+++. ..+++..+...+.||-.++................ ...
T Consensus 148 Va~Dl~~~dw~~~L~~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~--~~~ 225 (297)
T COG3315 148 VAVDLREDDWPQALAAAGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRP--AAR 225 (297)
T ss_pred EeccccccchHHHHHhcCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccch--hhh
Confidence 999998543 22 233346777788888854 47899999999888888777643111110000000 000
Q ss_pred HHHHHHhhccC--CCCCCCHHHHHHHHHhCCCceEEE
Q 017428 282 ELLKKICDAYY--LPAWCSTADYVKLLQSLSLEDIKA 316 (371)
Q Consensus 282 ~~~~~~~~~~~--~~~~~~~~~~~~ll~~aGF~~v~~ 316 (371)
........... .-......++..+|.+.||..+..
T Consensus 226 ~~~~~~~~~~~e~~~~~~~~~e~~~~l~~~g~~~~~~ 262 (297)
T COG3315 226 KTMRGEDLDRGELVYFGDDPAEIETWLAERGWRSTLN 262 (297)
T ss_pred hhccccccccccceeccCCHHHHHHHHHhcCEEEEec
Confidence 00000000001 111346899999999999997654
|
|
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.2 Score=41.19 Aligned_cols=99 Identities=22% Similarity=0.233 Sum_probs=60.5
Q ss_pred CCEEEEECCCcChHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCe-EEEEcCCCCC-CCCCCccceEEcccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKV-SFQVGDALQQ-PFPDGQFDLVWSMES 235 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v-~~~~~d~~~~-~~~~~~fD~v~~~~~ 235 (371)
+++++-+|+.. -|...++-..| ++|..|+..+--++. + ..+++ .+...|+... ..-.++||.+.+..+
T Consensus 2 ~~~g~V~GS~~-PwvEv~aL~~GA~~iltveyn~L~i~~--~------~~dr~ssi~p~df~~~~~~y~~~fD~~as~~s 72 (177)
T PF03269_consen 2 GKSGLVVGSMQ-PWVEVMALQHGAAKILTVEYNKLEIQE--E------FRDRLSSILPVDFAKNWQKYAGSFDFAASFSS 72 (177)
T ss_pred CceEEEEecCC-chhhHHHHHcCCceEEEEeecccccCc--c------cccccccccHHHHHHHHHHhhccchhhheech
Confidence 57888898874 34444544444 568888876521111 0 00111 1122222211 112478999999999
Q ss_pred ccCc-----CCH------HHHHHHHHHhcCCCcEEEEEeccC
Q 017428 236 GEHM-----PDK------SKFVSELARVTAPAGTIIIVTWCH 266 (371)
Q Consensus 236 l~~~-----~~~------~~~l~~~~~~LkpgG~l~i~~~~~ 266 (371)
++|+ .|+ .+.+.++.++|||||.|++..+..
T Consensus 73 iEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG 114 (177)
T PF03269_consen 73 IEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVG 114 (177)
T ss_pred hccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecC
Confidence 9987 222 578889999999999999987543
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.05 Score=41.45 Aligned_cols=33 Identities=30% Similarity=0.422 Sum_probs=27.3
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCH
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSP 191 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~ 191 (371)
+....+|||||.|.+...|... |..-.|+|.-.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E-Gy~G~GiD~R~ 90 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE-GYPGWGIDARR 90 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC-CCCcccccccc
Confidence 4678999999999999888776 77788888743
|
; GO: 0008168 methyltransferase activity |
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.022 Score=43.63 Aligned_cols=84 Identities=11% Similarity=0.260 Sum_probs=43.2
Q ss_pred ccceEEccccccCcC----C--HHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCH
Q 017428 226 QFDLVWSMESGEHMP----D--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCST 299 (371)
Q Consensus 226 ~fD~v~~~~~l~~~~----~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (371)
.||+|+|..+.-++. | ...+++.+++.|+|||.+++---....+. ......+. ......... +.+
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~-~~~~~~~~----~~~n~~~i~----lrP 71 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSYK-KAKRLSEE----IRENYKSIK----LRP 71 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHHH-TTTTS-HH----HHHHHHH--------G
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHHH-HHhhhhHH----HHhHHhceE----ECh
Confidence 489999887765542 2 36899999999999999998531111100 00011111 111112221 246
Q ss_pred HHHHHHHHh--CCCceEEEEe
Q 017428 300 ADYVKLLQS--LSLEDIKAED 318 (371)
Q Consensus 300 ~~~~~ll~~--aGF~~v~~~~ 318 (371)
+++.+.|.+ .||..++...
T Consensus 72 ~~F~~~L~~~evGF~~~e~~~ 92 (110)
T PF06859_consen 72 DQFEDYLLEPEVGFSSVEELG 92 (110)
T ss_dssp GGHHHHHTSTTT---EEEEE-
T ss_pred HHHHHHHHhcccceEEEEEcc
Confidence 678888877 6999877543
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.29 Score=47.05 Aligned_cols=105 Identities=13% Similarity=0.110 Sum_probs=67.2
Q ss_pred CCEEEEECCCcC--hHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHc-CCCCCeEEEEc-CCCC--CCC-CCCccceE
Q 017428 159 PKNVVDVGCGIG--GSSRYLAKKF-GAKCQGITLSPVQAQRANALAAAR-GLADKVSFQVG-DALQ--QPF-PDGQFDLV 230 (371)
Q Consensus 159 ~~~VLDlG~GtG--~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~-~~~~~v~~~~~-d~~~--~~~-~~~~fD~v 230 (371)
+..++|+|.|.| .++....... ...++.||.|..|........... .. ..+ ++.. -+.+ +|. ..+.||+|
T Consensus 201 pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~-g~~-~v~~~~~~r~~~pi~~~~~yDlv 278 (491)
T KOG2539|consen 201 PDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHI-GEP-IVRKLVFHRQRLPIDIKNGYDLV 278 (491)
T ss_pred hHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhc-Cch-hccccchhcccCCCCcccceeeE
Confidence 567888887754 4555554443 457999999999999988876551 10 011 1111 1111 232 34569999
Q ss_pred EccccccCcCCH---HHHHH-HHHHhcCCCcEEEEEecc
Q 017428 231 WSMESGEHMPDK---SKFVS-ELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 231 ~~~~~l~~~~~~---~~~l~-~~~~~LkpgG~l~i~~~~ 265 (371)
++.+.++++.+. ..+.+ ..++..++||.+++++-.
T Consensus 279 i~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g 317 (491)
T KOG2539|consen 279 ICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKG 317 (491)
T ss_pred EeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecC
Confidence 999999999654 23333 345667899999998843
|
|
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=93.38 E-value=0.065 Score=49.35 Aligned_cols=105 Identities=19% Similarity=0.211 Sum_probs=75.9
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHH-------HHHHHHHHcCCC-CCeEEEEcCCCCCCC-CCCccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQ-------RANALAAARGLA-DKVSFQVGDALQQPF-PDGQFD 228 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~-------~a~~~~~~~~~~-~~v~~~~~d~~~~~~-~~~~fD 228 (371)
++..|.|-=.|||.+....+. +|+-|+|.|++-.++. ..+.++++.|.. .-+.+..+|..+.++ ....||
T Consensus 208 pGdivyDPFVGTGslLvsaa~-FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~~fD 286 (421)
T KOG2671|consen 208 PGDIVYDPFVGTGSLLVSAAH-FGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNLKFD 286 (421)
T ss_pred CCCEEecCccccCceeeehhh-hcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhcceee
Confidence 589999999999999887776 4999999999988887 346677777743 346778889888764 357799
Q ss_pred eEEccc------------------------cccCcCC---------HHHHHHHHHHhcCCCcEEEEEe
Q 017428 229 LVWSME------------------------SGEHMPD---------KSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 229 ~v~~~~------------------------~l~~~~~---------~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+|+|-- .-.|++. ...++.-..+.|.-||++++--
T Consensus 287 aIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~ 354 (421)
T KOG2671|consen 287 AIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWL 354 (421)
T ss_pred EEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEec
Confidence 999821 1112211 1345666678888888888754
|
|
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.54 Score=47.46 Aligned_cols=98 Identities=16% Similarity=0.119 Sum_probs=67.9
Q ss_pred CEEEEECCCcChHHHHHHHHc-----CCEEEEEeCCHHHHHHHHHHH-HHcCC-------CCCeEEEEcCCCCCCCCC--
Q 017428 160 KNVVDVGCGIGGSSRYLAKKF-----GAKCQGITLSPVQAQRANALA-AARGL-------ADKVSFQVGDALQQPFPD-- 224 (371)
Q Consensus 160 ~~VLDlG~GtG~~~~~l~~~~-----~~~v~gvD~s~~~~~~a~~~~-~~~~~-------~~~v~~~~~d~~~~~~~~-- 224 (371)
..|+-+|+|-|-+.....+.. ..+|++|+-++..+.....+. ....+ .+.|+++..|+..+..+.
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 469999999999866655433 358999999966554544443 22233 245999999999874321
Q ss_pred ---------CccceEEccccccCcCCH---HHHHHHHHHhcCC----CcE
Q 017428 225 ---------GQFDLVWSMESGEHMPDK---SKFVSELARVTAP----AGT 258 (371)
Q Consensus 225 ---------~~fD~v~~~~~l~~~~~~---~~~l~~~~~~Lkp----gG~ 258 (371)
+.+|+|++ ..|..+.|. .+.|.-+.+.||+ +|+
T Consensus 782 ~s~~~P~~~gKaDIVVS-ELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVS-ELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceehH-hhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 36898875 556666543 6788888888887 776
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.23 Score=44.39 Aligned_cols=92 Identities=24% Similarity=0.244 Sum_probs=61.1
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-------CCCCccce
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-------FPDGQFDL 229 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-------~~~~~fD~ 229 (371)
++.+||-.|+|+ |..+..+++..+.+|++++.++...+.+++. +. ..++ +..+.. ...+.+|+
T Consensus 134 ~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~----g~---~~~~--~~~~~~~~~~~~~~~~~~~d~ 204 (271)
T cd05188 134 PGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKEL----GA---DHVI--DYKEEDLEEELRLTGGGGADV 204 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh----CC---ceec--cCCcCCHHHHHHHhcCCCCCE
Confidence 478999999986 6677777776688999999998877766442 21 1111 211111 12356999
Q ss_pred EEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 230 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
|+.... . ...+..+.+.|+++|.++....
T Consensus 205 vi~~~~-----~-~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 205 VIDAVG-----G-PETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred EEECCC-----C-HHHHHHHHHhcccCCEEEEEcc
Confidence 875422 1 1457778889999999988754
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=93.17 E-value=1.7 Score=33.56 Aligned_cols=84 Identities=24% Similarity=0.264 Sum_probs=55.8
Q ss_pred CCcChHHHHHHHHc--C-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----CCCCccceEEccccccCc
Q 017428 167 CGIGGSSRYLAKKF--G-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----FPDGQFDLVWSMESGEHM 239 (371)
Q Consensus 167 ~GtG~~~~~l~~~~--~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~v~~~~~l~~~ 239 (371)
||.|..+..+++.+ + ..|+.+|.+++.++.+++ ..+.++.+|..+.. ..-+..|.|++..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~--------~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~----- 70 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE--------EGVEVIYGDATDPEVLERAGIEKADAVVILT----- 70 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH--------TTSEEEES-TTSHHHHHHTTGGCESEEEEES-----
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh--------cccccccccchhhhHHhhcCccccCEEEEcc-----
Confidence 57778888888877 4 489999999999887765 24779999998752 2235677776643
Q ss_pred CCH--HHHHHHHHHhcCCCcEEEEEe
Q 017428 240 PDK--SKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 240 ~~~--~~~l~~~~~~LkpgG~l~i~~ 263 (371)
++. ...+....+-+.|...++...
T Consensus 71 ~~d~~n~~~~~~~r~~~~~~~ii~~~ 96 (116)
T PF02254_consen 71 DDDEENLLIALLARELNPDIRIIARV 96 (116)
T ss_dssp SSHHHHHHHHHHHHHHTTTSEEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCeEEEEE
Confidence 232 223444556677777777654
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] | Back alignment and domain information |
|---|
Probab=93.12 E-value=2.9 Score=39.99 Aligned_cols=102 Identities=23% Similarity=0.283 Sum_probs=59.9
Q ss_pred CCCEEEEECCCcCh----HHHHHHHHcC----CEEEEEeC----CHHHHHHHHHHHH----HcCCCCCeEEEEc---CCC
Q 017428 158 RPKNVVDVGCGIGG----SSRYLAKKFG----AKCQGITL----SPVQAQRANALAA----ARGLADKVSFQVG---DAL 218 (371)
Q Consensus 158 ~~~~VLDlG~GtG~----~~~~l~~~~~----~~v~gvD~----s~~~~~~a~~~~~----~~~~~~~v~~~~~---d~~ 218 (371)
+..+|+|+|.|.|. +...|+.+-+ .+||||+. +...++.+.+++. ..|++ .+|... +.+
T Consensus 110 ~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~--fef~~v~~~~~e 187 (374)
T PF03514_consen 110 RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVP--FEFHPVVVESLE 187 (374)
T ss_pred cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCcc--EEEEecccCchh
Confidence 37899999999987 2333444321 47999999 7777777666543 34664 555553 333
Q ss_pred CCC-----CCCCccceEEccccccCcCC-------H-HHHHHHHHHhcCCCcEEEEE
Q 017428 219 QQP-----FPDGQFDLVWSMESGEHMPD-------K-SKFVSELARVTAPAGTIIIV 262 (371)
Q Consensus 219 ~~~-----~~~~~fD~v~~~~~l~~~~~-------~-~~~l~~~~~~LkpgG~l~i~ 262 (371)
++. ...+..=+|-+...+||+.+ + ..+| ...+.|+|.-.+++-
T Consensus 188 ~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L-~~ir~L~P~vvv~~E 243 (374)
T PF03514_consen 188 DLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFL-RVIRSLNPKVVVLVE 243 (374)
T ss_pred hCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHH-HHHHhcCCCEEEEEe
Confidence 321 22233334445566788742 2 3355 455578998555443
|
Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions. |
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.94 E-value=0.45 Score=44.56 Aligned_cols=41 Identities=37% Similarity=0.503 Sum_probs=35.0
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANA 199 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~ 199 (371)
-..|+|+|.|.|.++..+.-.++..|.+||-|....+.|++
T Consensus 154 i~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 154 IDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred CCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 45699999999999999988889999999999766665554
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.85 E-value=0.35 Score=44.15 Aligned_cols=102 Identities=19% Similarity=0.177 Sum_probs=75.3
Q ss_pred CCCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccc
Q 017428 157 KRPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES 235 (371)
Q Consensus 157 ~~~~~VLDlG~Gt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~ 235 (371)
-++.+|.=||.|. |..+..++--+++.|+.+|+|..-+.+....+. .++...-....++...-...|+||..-.
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~-----~rv~~~~st~~~iee~v~~aDlvIgaVL 240 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFG-----GRVHTLYSTPSNIEEAVKKADLVIGAVL 240 (371)
T ss_pred CCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhC-----ceeEEEEcCHHHHHHHhhhccEEEEEEE
Confidence 3467889999885 677777777669999999999988877666542 3566665555444322356899987666
Q ss_pred ccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 236 GEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 236 l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+-.-..+.-+.+++.+.+|||+.++=+-
T Consensus 241 IpgakaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 241 IPGAKAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred ecCCCCceehhHHHHHhcCCCcEEEEEE
Confidence 6565677888999999999999887543
|
|
| >PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length | Back alignment and domain information |
|---|
Probab=92.84 E-value=1.8 Score=37.58 Aligned_cols=100 Identities=19% Similarity=0.183 Sum_probs=63.3
Q ss_pred CCEEEEECCCcCh----HHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-CCCCCCccceEEc
Q 017428 159 PKNVVDVGCGIGG----SSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-QPFPDGQFDLVWS 232 (371)
Q Consensus 159 ~~~VLDlG~GtG~----~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~fD~v~~ 232 (371)
...|+++.|+.|. ++...|.+. +.+++.|-+.+.-+...++.+...++.+.++|++++..+ .-..-...|+++.
T Consensus 42 AkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~~iDF~vV 121 (218)
T PF07279_consen 42 AKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGLKGIDFVVV 121 (218)
T ss_pred ceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhccCCCEEEE
Confidence 6789999766442 334444444 789999999988888888888878877678999988533 2111245788776
Q ss_pred cccccCcCCHH-HHHHHHHHhcCCCcEEEEEe
Q 017428 233 MESGEHMPDKS-KFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 233 ~~~l~~~~~~~-~~l~~~~~~LkpgG~l~i~~ 263 (371)
-.- ..|.. ++|+.+. +.|.|.+++..
T Consensus 122 Dc~---~~d~~~~vl~~~~--~~~~GaVVV~~ 148 (218)
T PF07279_consen 122 DCK---REDFAARVLRAAK--LSPRGAVVVCY 148 (218)
T ss_pred eCC---chhHHHHHHHHhc--cCCCceEEEEe
Confidence 432 23333 4443322 44567777754
|
The function of this family is unknown. |
| >KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.70 E-value=2.6 Score=38.61 Aligned_cols=55 Identities=16% Similarity=0.159 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHH
Q 017428 136 AAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRA 197 (371)
Q Consensus 136 ~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a 197 (371)
......+...+.... ....|+.+|||.-.+...+...+ ...++=||.++......
T Consensus 72 ~aI~~~v~~Fl~~~~-------~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi 129 (335)
T KOG2918|consen 72 MAIRHAVRAFLEQTD-------GKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKI 129 (335)
T ss_pred HHHHHHHHHHHHhcC-------CceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHH
Confidence 344445555555522 36789999999999888887765 35677778777655444
|
|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=92.66 E-value=0.34 Score=44.27 Aligned_cols=67 Identities=22% Similarity=0.146 Sum_probs=49.3
Q ss_pred EEEEECCCcChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC--CCccceEEcccc
Q 017428 161 NVVDVGCGIGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP--DGQFDLVWSMES 235 (371)
Q Consensus 161 ~VLDlG~GtG~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~fD~v~~~~~ 235 (371)
+|+|+-||.|.+...+.+. |. .+.++|+++..++..+.++. +. +...|+.+.... ...+|+|+..--
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~-G~~~v~a~e~~~~a~~~~~~N~~------~~-~~~~Di~~~~~~~~~~~~D~l~~gpP 71 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA-GFEIVAANEIDKSAAETYEANFP------NK-LIEGDITKIDEKDFIPDIDLLTGGFP 71 (275)
T ss_pred cEEEEccCcchHHHHHHHc-CCEEEEEEeCCHHHHHHHHHhCC------CC-CccCccccCchhhcCCCCCEEEeCCC
Confidence 6999999999998888765 44 47789999999888777542 12 566777776421 356999987543
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=92.65 E-value=0.69 Score=43.25 Aligned_cols=93 Identities=24% Similarity=0.278 Sum_probs=59.9
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcC---CCCCCCCCCccceEEc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGD---ALQQPFPDGQFDLVWS 232 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d---~~~~~~~~~~fD~v~~ 232 (371)
++.+||-.|+|. |..+..+++..+. .+++++.++...+.+++ .+.. .++..+ ........+.+|+|+.
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~~~~~vd~vld 237 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARA----MGAD---ETVNLARDPLAAYAADKGDFDVVFE 237 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----cCCC---EEEcCCchhhhhhhccCCCccEEEE
Confidence 478899988875 6677777777777 79999999888776544 2321 112111 1111111245898875
Q ss_pred cccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 233 MESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 233 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
.... ...++.+.+.|+++|.++...
T Consensus 238 ~~g~------~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 238 ASGA------PAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred CCCC------HHHHHHHHHHHhcCCEEEEEe
Confidence 4321 245788899999999998764
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=92.57 E-value=0.66 Score=43.02 Aligned_cols=86 Identities=21% Similarity=0.296 Sum_probs=56.4
Q ss_pred CCEEEEECCCc-ChHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccc
Q 017428 159 PKNVVDVGCGI-GGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (371)
Q Consensus 159 ~~~VLDlG~Gt-G~~~~~l~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l 236 (371)
+.+||=+|||. |.++..+++..+++ |+++|.++..++.+... . ..|..+. ....+|+|+-.-.
T Consensus 145 ~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~--------~i~~~~~--~~~g~Dvvid~~G- 209 (308)
T TIGR01202 145 VLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----E--------VLDPEKD--PRRDYRAIYDASG- 209 (308)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----c--------ccChhhc--cCCCCCEEEECCC-
Confidence 66788888764 77778888877775 66788888776655431 1 1111111 1245898875422
Q ss_pred cCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 237 EHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 237 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
. ...+..+.+.|++||.+++.-.
T Consensus 210 ----~-~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 210 ----D-PSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred ----C-HHHHHHHHHhhhcCcEEEEEee
Confidence 1 3467888899999999998764
|
|
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=92.32 E-value=0.65 Score=44.28 Aligned_cols=94 Identities=19% Similarity=0.180 Sum_probs=60.0
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----CCCCCccceE
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-----PFPDGQFDLV 230 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~fD~v 230 (371)
++.+||=.|+|. |..+..+++..++ +|+++|.++...+.+++ .|.. .++..+-.+. ....+.+|+|
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~---~~i~~~~~~~~~~i~~~~~~g~d~v 263 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE----LGAT---ATVNAGDPNAVEQVRELTGGGVDYA 263 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----cCCc---eEeCCCchhHHHHHHHHhCCCCCEE
Confidence 378888898763 5666777777677 69999999998887764 2321 1111111110 0112368888
Q ss_pred EccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
+-.-. . ...+..+.+.|+++|.+++...
T Consensus 264 id~~G-----~-~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 264 FEMAG-----S-VPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred EECCC-----C-hHHHHHHHHHHhcCCEEEEEcc
Confidence 74321 1 2467788899999999988653
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.16 E-value=0.89 Score=40.85 Aligned_cols=101 Identities=18% Similarity=0.163 Sum_probs=70.4
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC---CCccceEEcc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP---DGQFDLVWSM 233 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~fD~v~~~ 233 (371)
.+..|+-+| -.-..++.++-.. ..+|..+|+++..+...++.++..|+ +|++.+.-|+.+ |+| ...||+++.
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~-~~ie~~~~Dlr~-plpe~~~~kFDvfiT- 227 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGY-NNIEAFVFDLRN-PLPEDLKRKFDVFIT- 227 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCc-cchhheeehhcc-cChHHHHhhCCeeec-
Confidence 367799998 3344444444332 57899999999999999999999998 579999999977 344 378998764
Q ss_pred ccccCcCCHHHHHHHHHHhcCCC---cEEEEE
Q 017428 234 ESGEHMPDKSKFVSELARVTAPA---GTIIIV 262 (371)
Q Consensus 234 ~~l~~~~~~~~~l~~~~~~Lkpg---G~l~i~ 262 (371)
.--+.+.-...++.+=...||.- |++.+.
T Consensus 228 DPpeTi~alk~FlgRGI~tLkg~~~aGyfgiT 259 (354)
T COG1568 228 DPPETIKALKLFLGRGIATLKGEGCAGYFGIT 259 (354)
T ss_pred CchhhHHHHHHHHhccHHHhcCCCccceEeee
Confidence 22333333455666666677766 666664
|
|
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=92.05 E-value=1.1 Score=42.10 Aligned_cols=92 Identities=15% Similarity=0.139 Sum_probs=58.8
Q ss_pred CCCEEEEECCCc-ChHHHHHHHH-c-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKK-F-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSME 234 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~-~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~ 234 (371)
++.+||=+|||. |..+..++++ . +.+|+++|.++.-++.+++ .+. . ....+. . ....+|+|+-.-
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~---~-~~~~~~---~-~~~g~d~viD~~ 230 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE---T-YLIDDI---P-EDLAVDHAFECV 230 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc---e-eehhhh---h-hccCCcEEEECC
Confidence 488999999874 5556666765 3 4689999999988877754 121 1 111111 1 112488887432
Q ss_pred cccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 235 SGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 235 ~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
. . ......+....++|++||.+++.-.
T Consensus 231 G--~-~~~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 231 G--G-RGSQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred C--C-CccHHHHHHHHHhCcCCcEEEEEee
Confidence 1 1 1124578889999999999998764
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=91.57 E-value=1.1 Score=42.36 Aligned_cols=92 Identities=20% Similarity=0.165 Sum_probs=60.0
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------CCCCcc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------FPDGQF 227 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~~f 227 (371)
++.+||=.|+|. |..+..+++..++ +|+++|.++...+.+++ .|.. .++ +..+.. .....+
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~----~Ga~---~~i--~~~~~~~~~~i~~~~~~~g~ 246 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE----FGAT---HTV--NSSGTDPVEAIRALTGGFGA 246 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCc---eEE--cCCCcCHHHHHHHHhCCCCC
Confidence 488999998764 6667777777777 59999999988888754 2321 111 111111 122358
Q ss_pred ceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 228 DLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 228 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
|+|+-.- .. ...+....+.+++||.+++...
T Consensus 247 d~vid~~-----g~-~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 247 DVVIDAV-----GR-PETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred CEEEECC-----CC-HHHHHHHHHHhccCCEEEEECC
Confidence 8887432 12 2457778889999999998754
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only] | Back alignment and domain information |
|---|
Probab=91.40 E-value=0.24 Score=49.07 Aligned_cols=90 Identities=17% Similarity=0.228 Sum_probs=60.6
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------CCCCcc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------FPDGQF 227 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~~f 227 (371)
+...|||+||..|.|....++.. +.-|+|||+-|.- .++++.-.+.|+.... ...-+.
T Consensus 44 ~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik------------p~~~c~t~v~dIttd~cr~~l~k~l~t~~a 111 (780)
T KOG1098|consen 44 KAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK------------PIPNCDTLVEDITTDECRSKLRKILKTWKA 111 (780)
T ss_pred ccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc------------cCCccchhhhhhhHHHHHHHHHHHHHhCCC
Confidence 47889999999999999988877 6789999998843 3356777777776531 123345
Q ss_pred ceEEccccccCcC-CH-----------HHHHHHHHHhcCCCcEEE
Q 017428 228 DLVWSMESGEHMP-DK-----------SKFVSELARVTAPAGTII 260 (371)
Q Consensus 228 D~v~~~~~l~~~~-~~-----------~~~l~~~~~~LkpgG~l~ 260 (371)
|+|+.-. .+.+. .+ -..++-+...|+-||.++
T Consensus 112 dvVLhDg-apnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fv 155 (780)
T KOG1098|consen 112 DVVLHDG-APNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFV 155 (780)
T ss_pred cEEeecC-CCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccc
Confidence 8776533 22221 11 234555667788999944
|
|
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=91.19 E-value=2.8 Score=39.23 Aligned_cols=94 Identities=20% Similarity=0.210 Sum_probs=58.7
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC---C-C-CCCCccceE
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ---Q-P-FPDGQFDLV 230 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~-~-~~~~~fD~v 230 (371)
++.+||=+|+|. |..+..+++..+++ |++++.+++..+.+++ .|.. .++...-.+ . . .....+|+|
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~----~ga~---~~i~~~~~~~~~~~~~~~~~~~d~v 235 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKA----LGAD---FVINSGQDDVQEIRELTSGAGADVA 235 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCC---EEEcCCcchHHHHHHHhCCCCCCEE
Confidence 378999888753 55666677766877 9999999988777654 2321 111111000 0 0 122368988
Q ss_pred EccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
+-... . ...+..+.+.|+++|.+++...
T Consensus 236 id~~g-----~-~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 236 IECSG-----N-TAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred EECCC-----C-HHHHHHHHHHhhcCCEEEEEcC
Confidence 74321 1 2356777889999999988654
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=91.18 E-value=2.1 Score=39.02 Aligned_cols=92 Identities=17% Similarity=0.155 Sum_probs=58.9
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC------CCCCccce
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP------FPDGQFDL 229 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------~~~~~fD~ 229 (371)
++.+||=+|+|. |..+..+++..+++ |+++|.++.-.+.+++ .|. .... +..+.. .....+|+
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga----~~~i-~~~~~~~~~~~~~~~~g~d~ 190 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS----FGA----TALA-EPEVLAERQGGLQNGRGVDV 190 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCC----cEec-CchhhHHHHHHHhCCCCCCE
Confidence 478899998764 55666777766775 9999999887777665 232 1111 111110 11235888
Q ss_pred EEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 230 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
|+-.- .. ...++.+.+.|+|+|.+++...
T Consensus 191 vid~~-----G~-~~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 191 ALEFS-----GA-TAAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred EEECC-----CC-hHHHHHHHHHhcCCCEEEEecc
Confidence 86432 11 3467888999999999998764
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.93 E-value=0.5 Score=42.87 Aligned_cols=95 Identities=18% Similarity=0.133 Sum_probs=69.1
Q ss_pred CCEEEEECCCcChHHH-HHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 159 PKNVVDVGCGIGGSSR-YLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~-~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
+..|+|+=+|-|+++. .+.......|+++|.+|..++..+..++.+++..++.+..+|-... -+....|.|.....-.
T Consensus 195 ~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~-~~~~~AdrVnLGLlPS 273 (351)
T KOG1227|consen 195 GEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNP-KPRLRADRVNLGLLPS 273 (351)
T ss_pred cchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhcccccc-Cccccchheeeccccc
Confidence 5789999999999998 4444424579999999999999999999988877777788886554 3567888887653322
Q ss_pred CcCCHHHHHHHHHHhcCCCcE
Q 017428 238 HMPDKSKFVSELARVTAPAGT 258 (371)
Q Consensus 238 ~~~~~~~~l~~~~~~LkpgG~ 258 (371)
.-..+. .+.++|||.|-
T Consensus 274 se~~W~----~A~k~Lk~egg 290 (351)
T KOG1227|consen 274 SEQGWP----TAIKALKPEGG 290 (351)
T ss_pred cccchH----HHHHHhhhcCC
Confidence 222333 34556666554
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=90.80 E-value=5 Score=35.12 Aligned_cols=102 Identities=17% Similarity=0.119 Sum_probs=63.1
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC-----CC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FP-----DG 225 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~-----~~ 225 (371)
+.+||=.|++ |..+..+++.+ +.+|++++-++.......+..... .++.++..|+.+.. +. -+
T Consensus 5 ~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (238)
T PRK05786 5 GKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY---GNIHYVVGDVSSTESARNVIEKAAKVLN 80 (238)
T ss_pred CcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 5789999875 55555555544 789999999887666554444332 25788899987642 00 13
Q ss_pred ccceEEccccccCcC---C--------------HHHHHHHHHHhcCCCcEEEEEec
Q 017428 226 QFDLVWSMESGEHMP---D--------------KSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 226 ~fD~v~~~~~l~~~~---~--------------~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
..|.++......... + ...+++.+...++.+|.+++...
T Consensus 81 ~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss 136 (238)
T PRK05786 81 AIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSS 136 (238)
T ss_pred CCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEec
Confidence 468777654332111 1 11335566667778888777653
|
|
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=90.63 E-value=1 Score=40.28 Aligned_cols=119 Identities=19% Similarity=0.173 Sum_probs=64.5
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc------CCEEEEEeCCH----------------------
Q 017428 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF------GAKCQGITLSP---------------------- 191 (371)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~------~~~v~gvD~s~---------------------- 191 (371)
..+..+++.+-... -+.-|+|+||-.|..++.++..+ +.++.+.|.-+
T Consensus 60 ~~L~~~~~~v~~~~----vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~ 135 (248)
T PF05711_consen 60 DNLYQAVEQVLAED----VPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYN 135 (248)
T ss_dssp HHHHHHHHHCCHTT----S-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCC
T ss_pred HHHHHHHHHHHhcC----CCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcc
Confidence 34445555443222 26789999999998776654422 24688888321
Q ss_pred ----HHHHHHHHHHHHcCC-CCCeEEEEcCCCC-CC-CCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 192 ----VQAQRANALAAARGL-ADKVSFQVGDALQ-QP-FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 192 ----~~~~~a~~~~~~~~~-~~~v~~~~~d~~~-~~-~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
...+..++++.+.++ .+++.++.+.+.+ +| .+.+.+-++.+-.=++ .....+|..++..|.|||++++-++
T Consensus 136 ~~~~~s~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlY--esT~~aLe~lyprl~~GGiIi~DDY 213 (248)
T PF05711_consen 136 GYLAVSLEEVRENFARYGLLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDLY--ESTKDALEFLYPRLSPGGIIIFDDY 213 (248)
T ss_dssp HHCTHHHHHHHHCCCCTTTSSTTEEEEES-HHHHCCC-TT--EEEEEE---SH--HHHHHHHHHHGGGEEEEEEEEESST
T ss_pred cccccCHHHHHHHHHHcCCCcccEEEECCcchhhhccCCCccEEEEEEeccch--HHHHHHHHHHHhhcCCCeEEEEeCC
Confidence 123444444444443 4589999999755 22 2233333332221111 2336789999999999999999664
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=90.61 E-value=0.58 Score=42.97 Aligned_cols=54 Identities=24% Similarity=0.372 Sum_probs=37.5
Q ss_pred CeEEEEcCCCCC--CCCCCccceEEcccccc---C---c----------CCHHHHHHHHHHhcCCCcEEEEE
Q 017428 209 KVSFQVGDALQQ--PFPDGQFDLVWSMESGE---H---M----------PDKSKFVSELARVTAPAGTIIIV 262 (371)
Q Consensus 209 ~v~~~~~d~~~~--~~~~~~fD~v~~~~~l~---~---~----------~~~~~~l~~~~~~LkpgG~l~i~ 262 (371)
+..++.+|..+. .+++++||+|++.=-.. . . .-...++.++.++|||||.+++.
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 456788887764 35678899998842111 0 0 01146889999999999999985
|
|
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=90.60 E-value=1.4 Score=41.65 Aligned_cols=123 Identities=15% Similarity=0.171 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcC-CEEEEEeCCHHHHHHHHHH-------HHHcCC
Q 017428 135 RAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANAL-------AAARGL 206 (371)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~-------~~~~~~ 206 (371)
.+.+...+..+++.+.+++ .....|+|+|.|.....++...+ ..-+|+++....-+.|... .+-.|.
T Consensus 174 GE~~~~ql~si~dEl~~g~-----~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk 248 (419)
T KOG3924|consen 174 GETQLEQLRSIVDELKLGP-----ADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGK 248 (419)
T ss_pred hhhhHHHHHHHHHHhccCC-----CCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCC
Confidence 3445556677777777775 88999999999999988877543 3456776654433333222 222233
Q ss_pred -CCCeEEEEcCCCCCC---CCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 207 -ADKVSFQVGDALQQP---FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 207 -~~~v~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+..++.+.+++.+.. .-....++|+++++... ++...-+.++..-+++|-+++-..
T Consensus 249 ~~~~~~~i~gsf~~~~~v~eI~~eatvi~vNN~~Fd-p~L~lr~~eil~~ck~gtrIiS~~ 308 (419)
T KOG3924|consen 249 KPNKIETIHGSFLDPKRVTEIQTEATVIFVNNVAFD-PELKLRSKEILQKCKDGTRIISSK 308 (419)
T ss_pred CcCceeecccccCCHHHHHHHhhcceEEEEecccCC-HHHHHhhHHHHhhCCCcceEeccc
Confidence 455778888876642 11355788888876643 333444558888899998888765
|
|
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.58 E-value=3.7 Score=38.78 Aligned_cols=94 Identities=14% Similarity=0.065 Sum_probs=61.5
Q ss_pred CCCEEEEECC--CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc----CCCC-C-CCCCCccce
Q 017428 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVG----DALQ-Q-PFPDGQFDL 229 (371)
Q Consensus 158 ~~~~VLDlG~--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~----d~~~-~-~~~~~~fD~ 229 (371)
++.+||=.|+ |.|..+..+++..|++|++++.++...+.+++. .|.. .++.. +..+ . ....+.+|+
T Consensus 158 ~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~---lGa~---~vi~~~~~~~~~~~i~~~~~~gvD~ 231 (348)
T PLN03154 158 KGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNK---LGFD---EAFNYKEEPDLDAALKRYFPEGIDI 231 (348)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHh---cCCC---EEEECCCcccHHHHHHHHCCCCcEE
Confidence 4889999987 367888888888899999999998877766522 2321 11211 1110 0 011246888
Q ss_pred EEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 230 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
|+-.- . ...+..+.+.|++||.+++.-.
T Consensus 232 v~d~v-----G--~~~~~~~~~~l~~~G~iv~~G~ 259 (348)
T PLN03154 232 YFDNV-----G--GDMLDAALLNMKIHGRIAVCGM 259 (348)
T ss_pred EEECC-----C--HHHHHHHHHHhccCCEEEEECc
Confidence 87432 1 2467888999999999988653
|
|
| >PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function | Back alignment and domain information |
|---|
Probab=90.48 E-value=0.21 Score=39.62 Aligned_cols=75 Identities=24% Similarity=0.341 Sum_probs=47.5
Q ss_pred eEEEEcCCCCC-CCCCCccceEEccccccCcCCH----HHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHH
Q 017428 210 VSFQVGDALQQ-PFPDGQFDLVWSMESGEHMPDK----SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELL 284 (371)
Q Consensus 210 v~~~~~d~~~~-~~~~~~fD~v~~~~~l~~~~~~----~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~ 284 (371)
+.+..+|+.+. +--...||+|+.-. +.--.++ ..++++++++++|||.+.-..
T Consensus 33 L~L~~gDa~~~l~~l~~~~Da~ylDg-FsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys--------------------- 90 (124)
T PF05430_consen 33 LTLWFGDAREMLPQLDARFDAWYLDG-FSPAKNPELWSEELFKKLARLSKPGGTLATYS--------------------- 90 (124)
T ss_dssp EEEEES-HHHHHHHB-T-EEEEEE-S-S-TTTSGGGSSHHHHHHHHHHEEEEEEEEES----------------------
T ss_pred EEEEEcHHHHHHHhCcccCCEEEecC-CCCcCCcccCCHHHHHHHHHHhCCCcEEEEee---------------------
Confidence 55666776442 21136789888653 2222333 689999999999999877532
Q ss_pred HHHhhccCCCCCCCHHHHHHHHHhCCCceEEEEec
Q 017428 285 KKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDW 319 (371)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~ 319 (371)
....+++.|.++||.+.....+
T Consensus 91 -------------~a~~Vr~~L~~aGF~v~~~~g~ 112 (124)
T PF05430_consen 91 -------------SAGAVRRALQQAGFEVEKVPGF 112 (124)
T ss_dssp --------------BHHHHHHHHHCTEEEEEEE-S
T ss_pred -------------chHHHHHHHHHcCCEEEEcCCC
Confidence 3445889999999998776654
|
; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A. |
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=90.25 E-value=2.4 Score=38.29 Aligned_cols=92 Identities=25% Similarity=0.311 Sum_probs=59.3
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES 235 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~ 235 (371)
++.+||=.|+|. |..+..+++..+.+ |++++.+++..+.+++. |....+ .. ..........+|+|+....
T Consensus 97 ~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~----g~~~~~--~~--~~~~~~~~~~~d~vl~~~~ 168 (277)
T cd08255 97 LGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEAL----GPADPV--AA--DTADEIGGRGADVVIEASG 168 (277)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHc----CCCccc--cc--cchhhhcCCCCCEEEEccC
Confidence 478899888865 66777777777777 99999999887766652 211111 10 0000112346898875321
Q ss_pred ccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 236 GEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 236 l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
....+....+.|+++|.++...
T Consensus 169 ------~~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 169 ------SPSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred ------ChHHHHHHHHHhcCCcEEEEEe
Confidence 1246778899999999998764
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
| >COG4017 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=89.93 E-value=3 Score=35.43 Aligned_cols=85 Identities=20% Similarity=0.231 Sum_probs=58.6
Q ss_pred CCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 159 PKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 159 ~~~VLDlG~G-tG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
+.+||=+|.- ||.....+..+ .++|+.+|+.|.+-.. +|+++.|... +.++.+.+|+|+-...+.
T Consensus 45 ~~~vli~G~YltG~~~a~~Ls~-~~~vtv~Di~p~~r~~---------lp~~v~Fr~~----~~~~~G~~DlivDlTGlG 110 (254)
T COG4017 45 FKEVLIFGVYLTGNYTAQMLSK-ADKVTVVDIHPFMRGF---------LPNNVKFRNL----LKFIRGEVDLIVDLTGLG 110 (254)
T ss_pred cceEEEEEeeehhHHHHHHhcc-cceEEEecCCHHHHhc---------CCCCccHhhh----cCCCCCceeEEEeccccC
Confidence 6889999875 66666666554 6899999999987554 6778877655 334568899999887777
Q ss_pred CcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 238 HMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 238 ~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
.+.- +..+-+.| +.+++-+.
T Consensus 111 G~~P------e~L~~fnp-~vfiVEdP 130 (254)
T COG4017 111 GIEP------EFLAKFNP-KVFIVEDP 130 (254)
T ss_pred CCCH------HHHhccCC-ceEEEECC
Confidence 6532 23344556 44555443
|
|
| >cd08234 threonine_DH_like L-threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=89.93 E-value=3 Score=38.77 Aligned_cols=94 Identities=17% Similarity=0.088 Sum_probs=60.3
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC----CCCCCccceEE
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ----PFPDGQFDLVW 231 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~fD~v~ 231 (371)
++.+||-+|+|. |..+..+++..+.+ |++++.+++..+.+++ .+.. .++..+-.+. ......+|+|+
T Consensus 159 ~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~~vd~v~ 231 (334)
T cd08234 159 PGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKK----LGAT---ETVDPSREDPEAQKEDNPYGFDVVI 231 (334)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCe---EEecCCCCCHHHHHHhcCCCCcEEE
Confidence 478999998653 66667777776776 8999999888777643 2321 2222111110 01235689888
Q ss_pred ccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 232 SMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 232 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
.... ....+.++.+.|+++|.++....
T Consensus 232 ~~~~------~~~~~~~~~~~l~~~G~~v~~g~ 258 (334)
T cd08234 232 EATG------VPKTLEQAIEYARRGGTVLVFGV 258 (334)
T ss_pred ECCC------ChHHHHHHHHHHhcCCEEEEEec
Confidence 5421 13567888999999999987654
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=89.42 E-value=2.5 Score=39.88 Aligned_cols=98 Identities=17% Similarity=0.225 Sum_probs=59.1
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----CC-CCCccc--
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-----PF-PDGQFD-- 228 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~-~~~~fD-- 228 (371)
++.+||=+|+|. |..+..+++..+++|+++|.++..++.+++ .|...-+.....+..+. .+ ....+|
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~ 241 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKG----FGADLTLNPKDKSAREVKKLIKAFAKARGLRST 241 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH----hCCceEecCccccHHHHHHHHHhhcccCCCCCC
Confidence 488999999865 667777888778899999999998887754 23210011001000000 00 112344
Q ss_pred --eEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEecc
Q 017428 229 --LVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 229 --~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
+|+- .... ...++.+.+.|++||.+++....
T Consensus 242 ~d~v~d-----~~g~-~~~~~~~~~~l~~~G~iv~~G~~ 274 (349)
T TIGR03201 242 GWKIFE-----CSGS-KPGQESALSLLSHGGTLVVVGYT 274 (349)
T ss_pred cCEEEE-----CCCC-hHHHHHHHHHHhcCCeEEEECcC
Confidence 4432 1112 34667788899999999987643
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.37 E-value=4.5 Score=36.37 Aligned_cols=73 Identities=29% Similarity=0.251 Sum_probs=48.4
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CCC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDG 225 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~ 225 (371)
+.+||=.| |+|..+..+++.+ +++|++++.++..+....+.+...+ .++.++..|+.+.. + ..+
T Consensus 9 ~k~ilItG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~i~~~~~~~~~~~~ 85 (264)
T PRK07576 9 GKNVVVVG-GTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAG--PEGLGVSADVRDYAAVEAAFAQIADEFG 85 (264)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC--CceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 67888888 4556666655544 7899999998877665554444433 35778888987632 1 124
Q ss_pred ccceEEccc
Q 017428 226 QFDLVWSME 234 (371)
Q Consensus 226 ~fD~v~~~~ 234 (371)
..|+++.+.
T Consensus 86 ~iD~vi~~a 94 (264)
T PRK07576 86 PIDVLVSGA 94 (264)
T ss_pred CCCEEEECC
Confidence 579988654
|
|
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=89.35 E-value=1.9 Score=41.19 Aligned_cols=94 Identities=18% Similarity=0.258 Sum_probs=59.7
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC--C-----CCCCCccc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ--Q-----PFPDGQFD 228 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~-----~~~~~~fD 228 (371)
++.+||=+|+|. |..+..+++..++ +|+++|.+++.++.+++ .|.. .++...-.+ . ....+.+|
T Consensus 198 ~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~---~~i~~~~~~~~~~~~v~~~~~~g~d 270 (381)
T PLN02740 198 AGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE----MGIT---DFINPKDSDKPVHERIREMTGGGVD 270 (381)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH----cCCc---EEEecccccchHHHHHHHHhCCCCC
Confidence 488999999864 5566777777777 69999999988888765 3321 122111100 0 01123689
Q ss_pred eEEccccccCcCCHHHHHHHHHHhcCCC-cEEEEEec
Q 017428 229 LVWSMESGEHMPDKSKFVSELARVTAPA-GTIIIVTW 264 (371)
Q Consensus 229 ~v~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~ 264 (371)
+|+-.-. . ...+......+++| |.+++...
T Consensus 271 vvid~~G-----~-~~~~~~a~~~~~~g~G~~v~~G~ 301 (381)
T PLN02740 271 YSFECAG-----N-VEVLREAFLSTHDGWGLTVLLGI 301 (381)
T ss_pred EEEECCC-----C-hHHHHHHHHhhhcCCCEEEEEcc
Confidence 8875322 1 24677888889997 98877654
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=89.18 E-value=0.86 Score=43.55 Aligned_cols=101 Identities=17% Similarity=0.206 Sum_probs=56.5
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccc
Q 017428 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (371)
Q Consensus 158 ~~~~VLDlG~G-tG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l 236 (371)
++.+|+=+|+| .|..+...+..+|++|+.+|.++..++.+.... + ..+.....+...+.-.-..+|+|+..-.+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~---g--~~v~~~~~~~~~l~~~l~~aDvVI~a~~~ 240 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEF---G--GRIHTRYSNAYEIEDAVKRADLLIGAVLI 240 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhc---C--ceeEeccCCHHHHHHHHccCCEEEEcccc
Confidence 46779999988 466666666766889999999987665544322 1 11211111111111001458999865322
Q ss_pred cCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 237 EHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 237 ~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
..-..+.-+-+++.+.++||+.++-..
T Consensus 241 ~g~~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 241 PGAKAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred CCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence 111112112356667789998777644
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >KOG2078 consensus tRNA modification enzyme [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.08 E-value=0.27 Score=46.66 Aligned_cols=61 Identities=23% Similarity=0.182 Sum_probs=53.5
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCC-eEEEEcCCCC
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADK-VSFQVGDALQ 219 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~-v~~~~~d~~~ 219 (371)
++..|.|+-||.|-+++.++.+ ++.|++-|+.++++++.+.+++-+.+.+. ++.+..|+.+
T Consensus 249 ~gevv~D~FaGvGPfa~Pa~kK-~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~ 310 (495)
T KOG2078|consen 249 PGEVVCDVFAGVGPFALPAAKK-GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKD 310 (495)
T ss_pred CcchhhhhhcCcCccccchhhc-CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHH
Confidence 4889999999999999999988 79999999999999999999888777665 8887777643
|
|
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=89.07 E-value=7.1 Score=36.19 Aligned_cols=92 Identities=15% Similarity=0.098 Sum_probs=60.3
Q ss_pred CCCEEEEECC--CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC-CCC-----CCCCCccce
Q 017428 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA-LQQ-----PFPDGQFDL 229 (371)
Q Consensus 158 ~~~~VLDlG~--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~-----~~~~~~fD~ 229 (371)
++.+||=.|. |.|..+..+++..|++|++++.+++..+.+++ .|.. .++..+- ... ....+.+|+
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~~~~~~gvdv 210 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKK----LGFD---VAFNYKTVKSLEETLKKASPDGYDC 210 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCC---EEEeccccccHHHHHHHhCCCCeEE
Confidence 4889998884 46888888888878899999999888777654 3331 1111111 011 012246888
Q ss_pred EEccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 230 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
|+-.- .. ..+..+.++|+++|.++...
T Consensus 211 v~d~~-----G~--~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 211 YFDNV-----GG--EFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred EEECC-----CH--HHHHHHHHHhCcCcEEEEec
Confidence 87421 11 34678899999999999764
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins | Back alignment and domain information |
|---|
Probab=88.95 E-value=5 Score=37.22 Aligned_cols=93 Identities=19% Similarity=0.180 Sum_probs=59.6
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-CCCCccceEEcccc
Q 017428 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-FPDGQFDLVWSMES 235 (371)
Q Consensus 158 ~~~~VLDlG~G-tG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~v~~~~~ 235 (371)
++.+||-+|+| .|..+..+++..+.+|++++.++...+.+++ .+. -.++...-.... -..+.+|+++....
T Consensus 162 ~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~----~g~---~~~~~~~~~~~~~~~~~~~d~vi~~~~ 234 (330)
T cd08245 162 PGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARK----LGA---DEVVDSGAELDEQAAAGGADVILVTVV 234 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----hCC---cEEeccCCcchHHhccCCCCEEEECCC
Confidence 47889999887 5777777777778899999999988777643 221 111111100100 01245888875321
Q ss_pred ccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 236 GEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 236 l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
. ...+..+.+.|+++|.++...
T Consensus 235 -----~-~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 235 -----S-GAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred -----c-HHHHHHHHHhcccCCEEEEEC
Confidence 1 246778889999999998875
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an |
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=88.74 E-value=3.9 Score=39.46 Aligned_cols=88 Identities=17% Similarity=0.169 Sum_probs=55.9
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l 236 (371)
.+.+|+=+|+|. |......++.++++|+++|.++.....+.. .| ..+ .+..+. . ...|+|+..-
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~----~G----~~v--~~leea-l--~~aDVVItaT-- 258 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAM----DG----FRV--MTMEEA-A--KIGDIFITAT-- 258 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHh----cC----CEe--CCHHHH-H--hcCCEEEECC--
Confidence 488999999986 555555666668999999999865444332 22 222 222221 1 3468887632
Q ss_pred cCcCCHHHHHH-HHHHhcCCCcEEEEEec
Q 017428 237 EHMPDKSKFVS-ELARVTAPAGTIIIVTW 264 (371)
Q Consensus 237 ~~~~~~~~~l~-~~~~~LkpgG~l~i~~~ 264 (371)
.. ..++. +....+|+|++++....
T Consensus 259 ---G~-~~vI~~~~~~~mK~GailiN~G~ 283 (406)
T TIGR00936 259 ---GN-KDVIRGEHFENMKDGAIVANIGH 283 (406)
T ss_pred ---CC-HHHHHHHHHhcCCCCcEEEEECC
Confidence 22 34444 58889999999888653
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=88.46 E-value=2.9 Score=38.67 Aligned_cols=92 Identities=16% Similarity=0.134 Sum_probs=60.4
Q ss_pred CCCEEEEECC--CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----CCCCCccceE
Q 017428 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-----PFPDGQFDLV 230 (371)
Q Consensus 158 ~~~~VLDlG~--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~fD~v 230 (371)
++.+||=.|+ |.|..+..+++..|++|++++.+++..+.+++ .|.. .++...-.+. ......+|+|
T Consensus 143 ~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~----~Ga~---~vi~~~~~~~~~~v~~~~~~gvd~v 215 (329)
T cd08294 143 AGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKE----LGFD---AVFNYKTVSLEEALKEAAPDGIDCY 215 (329)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCC---EEEeCCCccHHHHHHHHCCCCcEEE
Confidence 4788988873 56778888888889999999999887777655 3331 1121111111 1122458888
Q ss_pred EccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+-.- . ...+..+.+.|+++|.++...
T Consensus 216 ld~~-----g--~~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 216 FDNV-----G--GEFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred EECC-----C--HHHHHHHHHhhccCCEEEEEc
Confidence 7431 1 245788899999999998764
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=88.44 E-value=7.8 Score=36.83 Aligned_cols=95 Identities=19% Similarity=0.179 Sum_probs=59.5
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcC----CCC-C-CCCCCccce
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGD----ALQ-Q-PFPDGQFDL 229 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d----~~~-~-~~~~~~fD~ 229 (371)
++.+||=.|+|. |..+..+++..++ +|+++|.++...+.+++ .|.. ..+...+ ..+ . ....+.+|+
T Consensus 185 ~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~----~Ga~--~~i~~~~~~~~~~~~v~~~~~~g~d~ 258 (368)
T TIGR02818 185 EGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKK----LGAT--DCVNPNDYDKPIQEVIVEITDGGVDY 258 (368)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCC--eEEcccccchhHHHHHHHHhCCCCCE
Confidence 488999999864 6677778887777 79999999998887755 2321 1111111 000 0 011235888
Q ss_pred EEccccccCcCCHHHHHHHHHHhcCCC-cEEEEEec
Q 017428 230 VWSMESGEHMPDKSKFVSELARVTAPA-GTIIIVTW 264 (371)
Q Consensus 230 v~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~ 264 (371)
|+-.- .. ...+..+.+.+++| |.+++...
T Consensus 259 vid~~-----G~-~~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 259 SFECI-----GN-VNVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred EEECC-----CC-HHHHHHHHHHhhcCCCeEEEEec
Confidence 76432 11 34677888899886 99887754
|
The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols. |
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.28 E-value=2.1 Score=40.27 Aligned_cols=94 Identities=20% Similarity=0.237 Sum_probs=57.9
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC---C--CCCCCccc-e
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ---Q--PFPDGQFD-L 229 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~--~~~~~~fD-~ 229 (371)
++.+||=.|+|+ |..+..+++..+++ |++++.+++..+.+++ .|.. .++..+-.. . ......+| +
T Consensus 160 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~Ga~---~~i~~~~~~~~~~~~~~~~~~~d~~ 232 (347)
T PRK10309 160 EGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKS----LGAM---QTFNSREMSAPQIQSVLRELRFDQL 232 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCc---eEecCcccCHHHHHHHhcCCCCCeE
Confidence 478999998764 55667777777776 7899999988777643 2321 111111000 0 01223577 5
Q ss_pred EEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 230 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
|+-. ... ...+....+.|++||.+++...
T Consensus 233 v~d~-----~G~-~~~~~~~~~~l~~~G~iv~~G~ 261 (347)
T PRK10309 233 ILET-----AGV-PQTVELAIEIAGPRAQLALVGT 261 (347)
T ss_pred EEEC-----CCC-HHHHHHHHHHhhcCCEEEEEcc
Confidence 4421 122 3467888999999999998764
|
|
| >cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=88.00 E-value=5.9 Score=36.91 Aligned_cols=94 Identities=19% Similarity=0.166 Sum_probs=61.0
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC------CCCCCccceE
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ------PFPDGQFDLV 230 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~fD~v 230 (371)
++.+||-.|+|. |..+..+++..+.+|+++..+++..+.+++. +. -.++...-... ..+...+|+|
T Consensus 159 ~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~----g~---~~v~~~~~~~~~~~l~~~~~~~~vd~v 231 (337)
T cd08261 159 AGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFAREL----GA---DDTINVGDEDVAARLRELTDGEGADVV 231 (337)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHh----CC---CEEecCcccCHHHHHHHHhCCCCCCEE
Confidence 478999998764 7777888887788999998888887776442 21 11111111110 0123458988
Q ss_pred EccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
+.... . ...+..+.+.|+++|.++....
T Consensus 232 ld~~g-----~-~~~~~~~~~~l~~~G~~i~~g~ 259 (337)
T cd08261 232 IDATG-----N-PASMEEAVELVAHGGRVVLVGL 259 (337)
T ss_pred EECCC-----C-HHHHHHHHHHHhcCCEEEEEcC
Confidence 75421 1 3457888999999999887653
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, |
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=87.87 E-value=25 Score=35.54 Aligned_cols=78 Identities=13% Similarity=0.095 Sum_probs=49.1
Q ss_pred CCCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHc-----C--CCCCeEEEEcCCCCCC-C--CC
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAAR-----G--LADKVSFQVGDALQQP-F--PD 224 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~-----~--~~~~v~~~~~d~~~~~-~--~~ 224 (371)
.+..||-.|+ +|..+..+++.+ |.+|++++.+...+......+... + ...++.++.+|+.+.. + .-
T Consensus 79 ~gKvVLVTGA-TGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aL 157 (576)
T PLN03209 79 DEDLAFVAGA-TGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPAL 157 (576)
T ss_pred CCCEEEEECC-CCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHh
Confidence 3667777774 566777766655 789999998877665443333221 1 1135889999998742 1 12
Q ss_pred CccceEEccccc
Q 017428 225 GQFDLVWSMESG 236 (371)
Q Consensus 225 ~~fD~v~~~~~l 236 (371)
+..|+||++...
T Consensus 158 ggiDiVVn~AG~ 169 (576)
T PLN03209 158 GNASVVICCIGA 169 (576)
T ss_pred cCCCEEEEcccc
Confidence 457988876443
|
|
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=87.86 E-value=2.8 Score=39.78 Aligned_cols=95 Identities=23% Similarity=0.228 Sum_probs=55.9
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE-cCCCCCCCCCCccceEEcccc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQV-GDALQQPFPDGQFDLVWSMES 235 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~fD~v~~~~~ 235 (371)
++.+||=.|+|. |..+..+++..++++++++.++.....+. +..|.. .++. .+........+.+|+|+-.-.
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~---~~~Ga~---~vi~~~~~~~~~~~~~~~D~vid~~g 256 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAI---NRLGAD---SFLVSTDPEKMKAAIGTMDYIIDTVS 256 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHH---HhCCCc---EEEcCCCHHHHHhhcCCCCEEEECCC
Confidence 477888898864 66777788877889999888765433221 123321 1111 110011000124788774321
Q ss_pred ccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 236 GEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 236 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
. ...++++.+.|++||.++....
T Consensus 257 -----~-~~~~~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 257 -----A-VHALGPLLGLLKVNGKLITLGL 279 (360)
T ss_pred -----C-HHHHHHHHHHhcCCcEEEEeCC
Confidence 2 2357788899999999988753
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=87.86 E-value=2.2 Score=41.74 Aligned_cols=102 Identities=17% Similarity=0.155 Sum_probs=61.6
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~Gt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (371)
.++.+++...+. ..+.+|+=+|+|. |......++.+|++|+++|.++.....+.. .| ..+. ++.+
T Consensus 240 ~~d~i~r~t~i~----LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~----~G----~~vv--~leE 305 (477)
T PLN02494 240 LPDGLMRATDVM----IAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALM----EG----YQVL--TLED 305 (477)
T ss_pred HHHHHHHhcCCc----cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHh----cC----Ceec--cHHH
Confidence 455555544432 1478999999985 444444555558999999999865444332 12 2221 2222
Q ss_pred CCCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 220 QPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 220 ~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
. . ...|+|+.... +..-+..+....+|+||.|+.+..
T Consensus 306 a-l--~~ADVVI~tTG-----t~~vI~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 306 V-V--SEADIFVTTTG-----NKDIIMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred H-H--hhCCEEEECCC-----CccchHHHHHhcCCCCCEEEEcCC
Confidence 1 1 34798886322 222334778889999999998753
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.82 E-value=8.8 Score=33.54 Aligned_cols=74 Identities=18% Similarity=0.122 Sum_probs=49.2
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC-----CC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FP-----DG 225 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~-----~~ 225 (371)
+.+||=+| |+|.++..+++.+ +.+|++++.++.......+.+... .++.++.+|+.+.. +. .+
T Consensus 6 ~~~ilItG-atg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (237)
T PRK07326 6 GKVALITG-GSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK---GNVLGLAADVRDEADVQRAVDAIVAAFG 81 (237)
T ss_pred CCEEEEEC-CCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc---CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 57788888 4677777776655 789999998887665554444322 36888899987642 10 13
Q ss_pred ccceEEccccc
Q 017428 226 QFDLVWSMESG 236 (371)
Q Consensus 226 ~fD~v~~~~~l 236 (371)
.+|.|+.+...
T Consensus 82 ~~d~vi~~ag~ 92 (237)
T PRK07326 82 GLDVLIANAGV 92 (237)
T ss_pred CCCEEEECCCC
Confidence 68888866543
|
|
| >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown | Back alignment and domain information |
|---|
Probab=87.71 E-value=1.8 Score=34.15 Aligned_cols=91 Identities=22% Similarity=0.362 Sum_probs=48.1
Q ss_pred CCEEEEECCCcChH-HHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC-CCccceEEccccc
Q 017428 159 PKNVVDVGCGIGGS-SRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP-DGQFDLVWSMESG 236 (371)
Q Consensus 159 ~~~VLDlG~GtG~~-~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~v~~~~~l 236 (371)
..+|+|||-|.-.- +..|.+. |..|+++|+.+.- .+..+.++..|+.+.... =...|+|++...-
T Consensus 14 ~~kiVEVGiG~~~~vA~~L~~~-G~dV~~tDi~~~~------------a~~g~~~v~DDif~P~l~iY~~a~lIYSiRPP 80 (127)
T PF03686_consen 14 YGKIVEVGIGFNPEVAKKLKER-GFDVIATDINPRK------------APEGVNFVVDDIFNPNLEIYEGADLIYSIRPP 80 (127)
T ss_dssp SSEEEEET-TT--HHHHHHHHH-S-EEEEE-SS-S----------------STTEE---SSS--HHHHTTEEEEEEES--
T ss_pred CCcEEEECcCCCHHHHHHHHHc-CCcEEEEECcccc------------cccCcceeeecccCCCHHHhcCCcEEEEeCCC
Confidence 56999999997654 4455554 8999999999861 124678999999885421 1357888765422
Q ss_pred cCcCCHHHHHHHHHHhcCCCcEEEEEeccCC
Q 017428 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHR 267 (371)
Q Consensus 237 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 267 (371)
++.+..+.++.+. -|.-++|...+.+
T Consensus 81 ---~El~~~il~lA~~--v~adlii~pL~~e 106 (127)
T PF03686_consen 81 ---PELQPPILELAKK--VGADLIIRPLGGE 106 (127)
T ss_dssp ---TTSHHHHHHHHHH--HT-EEEEE-BTTB
T ss_pred ---hHHhHHHHHHHHH--hCCCEEEECCCCC
Confidence 3444555555553 3567777765544
|
; PDB: 2K4M_A. |
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=87.66 E-value=2.5 Score=40.48 Aligned_cols=45 Identities=18% Similarity=0.192 Sum_probs=35.5
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHH
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAA 203 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~ 203 (371)
++.+||-|++|.......+.+. ..+|++||++|.|....+-++..
T Consensus 35 ~~d~vl~ItSaG~N~L~yL~~~-P~~I~aVDlNp~Q~aLleLKlAa 79 (380)
T PF11899_consen 35 PDDRVLTITSAGCNALDYLLAG-PKRIHAVDLNPAQNALLELKLAA 79 (380)
T ss_pred CCCeEEEEccCCchHHHHHhcC-CceEEEEeCCHHHHHHHHHHHHH
Confidence 3899999987766666665554 78999999999999888766543
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=87.48 E-value=11 Score=34.39 Aligned_cols=79 Identities=16% Similarity=0.050 Sum_probs=58.2
Q ss_pred CCCCEEEEECCCcCh---HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----------CC
Q 017428 157 KRPKNVVDVGCGIGG---SSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----------FP 223 (371)
Q Consensus 157 ~~~~~VLDlG~GtG~---~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~~ 223 (371)
-.+..||==|.|.|. .+..++++ ++.+...|+...-.+...+.+++.| .+.....|+.+.. -.
T Consensus 36 v~g~~vLITGgg~GlGr~ialefa~r-g~~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~e 111 (300)
T KOG1201|consen 36 VSGEIVLITGGGSGLGRLIALEFAKR-GAKLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKKE 111 (300)
T ss_pred ccCCEEEEeCCCchHHHHHHHHHHHh-CCeEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHHh
Confidence 347788888888775 44555555 7899999999988888888777665 6889999988752 12
Q ss_pred CCccceEEccccccCc
Q 017428 224 DGQFDLVWSMESGEHM 239 (371)
Q Consensus 224 ~~~fD~v~~~~~l~~~ 239 (371)
-+..|+++.+..+-+.
T Consensus 112 ~G~V~ILVNNAGI~~~ 127 (300)
T KOG1201|consen 112 VGDVDILVNNAGIVTG 127 (300)
T ss_pred cCCceEEEeccccccC
Confidence 4678988887665443
|
|
| >cd05285 sorbitol_DH Sorbitol dehydrogenase | Back alignment and domain information |
|---|
Probab=87.38 E-value=7.1 Score=36.52 Aligned_cols=94 Identities=21% Similarity=0.237 Sum_probs=60.0
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-------C--CCCCCc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-------Q--PFPDGQ 226 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-------~--~~~~~~ 226 (371)
++.+||-.|+|. |..+..+++..+.+ |+.++.++...+.+++. +.. .++..+-.. + ......
T Consensus 162 ~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~----g~~---~vi~~~~~~~~~~~~~~~~~~~~~~ 234 (343)
T cd05285 162 PGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL----GAT---HTVNVRTEDTPESAEKIAELLGGKG 234 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCc---EEeccccccchhHHHHHHHHhCCCC
Confidence 478888888765 66777788877877 89998888887766542 221 111111111 0 122355
Q ss_pred cceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 227 FDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 227 fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
+|+|+-...- ...+..+.+.|+++|.++....
T Consensus 235 ~d~vld~~g~------~~~~~~~~~~l~~~G~~v~~g~ 266 (343)
T cd05285 235 PDVVIECTGA------ESCIQTAIYATRPGGTVVLVGM 266 (343)
T ss_pred CCEEEECCCC------HHHHHHHHHHhhcCCEEEEEcc
Confidence 8998854221 2367888999999999887653
|
Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=87.35 E-value=2 Score=41.06 Aligned_cols=92 Identities=23% Similarity=0.333 Sum_probs=57.9
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--C-------CCCCc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--P-------FPDGQ 226 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~-------~~~~~ 226 (371)
++.+||=.|+|. |..+..+++..+. .|+++|.++...+.+++ .|.. .++ +..+. + ...+.
T Consensus 193 ~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~----lGa~---~~i--~~~~~~~~~~~~v~~~~~~g 263 (378)
T PLN02827 193 KGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKT----FGVT---DFI--NPNDLSEPIQQVIKRMTGGG 263 (378)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCc---EEE--cccccchHHHHHHHHHhCCC
Confidence 488999998764 5566677776676 58899999988777654 3331 111 11110 0 11235
Q ss_pred cceEEccccccCcCCHHHHHHHHHHhcCCC-cEEEEEec
Q 017428 227 FDLVWSMESGEHMPDKSKFVSELARVTAPA-GTIIIVTW 264 (371)
Q Consensus 227 fD~v~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~ 264 (371)
+|+|+-.-. . ...+....+.|++| |.+++.-.
T Consensus 264 ~d~vid~~G-----~-~~~~~~~l~~l~~g~G~iv~~G~ 296 (378)
T PLN02827 264 ADYSFECVG-----D-TGIATTALQSCSDGWGLTVTLGV 296 (378)
T ss_pred CCEEEECCC-----C-hHHHHHHHHhhccCCCEEEEECC
Confidence 888874321 1 23567788899998 99987653
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=87.32 E-value=6.3 Score=40.99 Aligned_cols=101 Identities=23% Similarity=0.221 Sum_probs=63.5
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC-----CC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FP-----DG 225 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~-----~~ 225 (371)
+++||=.|+ +|..+..+++.+ |++|+.+|.++..++.+.+.+... .++.++..|+.+.. +. .+
T Consensus 422 gk~vLVTGa-sggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~~g 497 (681)
T PRK08324 422 GKVALVTGA-AGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALAFG 497 (681)
T ss_pred CCEEEEecC-CCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 467887775 455555555544 789999999987776655544322 36888889987642 11 24
Q ss_pred ccceEEccccccCcCC-------------------HHHHHHHHHHhcCC---CcEEEEEe
Q 017428 226 QFDLVWSMESGEHMPD-------------------KSKFVSELARVTAP---AGTIIIVT 263 (371)
Q Consensus 226 ~fD~v~~~~~l~~~~~-------------------~~~~l~~~~~~Lkp---gG~l~i~~ 263 (371)
.+|+|+.+........ ...+++.+.+.++. ||.+++..
T Consensus 498 ~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vs 557 (681)
T PRK08324 498 GVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIA 557 (681)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 6899887665432211 23456666777766 67777765
|
|
| >cd05278 FDH_like Formaldehyde dehydrogenases | Back alignment and domain information |
|---|
Probab=87.23 E-value=6.2 Score=36.82 Aligned_cols=93 Identities=19% Similarity=0.174 Sum_probs=58.0
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC------CCCCCccce
Q 017428 158 RPKNVVDVGCG-IGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ------PFPDGQFDL 229 (371)
Q Consensus 158 ~~~~VLDlG~G-tG~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~fD~ 229 (371)
++.+||-.|+| .|..+..+++..+. .+++++.++...+.+++ .+. ..++...-.+. -...+.+|+
T Consensus 167 ~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~----~g~---~~vi~~~~~~~~~~i~~~~~~~~~d~ 239 (347)
T cd05278 167 PGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKE----AGA---TDIINPKNGDIVEQILELTGGRGVDC 239 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH----hCC---cEEEcCCcchHHHHHHHHcCCCCCcE
Confidence 47888888775 36677778887774 88999888877666554 221 11111111110 012356898
Q ss_pred EEccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 230 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
|+-...- ...+.++.+.|+++|.++...
T Consensus 240 vld~~g~------~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 240 VIEAVGF------EETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred EEEccCC------HHHHHHHHHHhhcCCEEEEEc
Confidence 8753211 246888899999999988664
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall |
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.17 E-value=14 Score=32.73 Aligned_cols=75 Identities=17% Similarity=0.158 Sum_probs=50.8
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CCC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDG 225 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~ 225 (371)
+.+||=.|+ +|..+..+++.+ +++|+.++-+++.++...+.++..+ .++.++..|+.+.. + .-+
T Consensus 11 ~k~ilItGa-s~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 87 (256)
T PRK06124 11 GQVALVTGS-ARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAG--GAAEALAFDIADEEAVAAAFARIDAEHG 87 (256)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 678888885 555566665554 7899999999877766655555443 46888999987642 0 124
Q ss_pred ccceEEccccc
Q 017428 226 QFDLVWSMESG 236 (371)
Q Consensus 226 ~fD~v~~~~~l 236 (371)
+.|.|+.+...
T Consensus 88 ~id~vi~~ag~ 98 (256)
T PRK06124 88 RLDILVNNVGA 98 (256)
T ss_pred CCCEEEECCCC
Confidence 67888866543
|
|
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=87.16 E-value=4.2 Score=38.09 Aligned_cols=97 Identities=19% Similarity=0.270 Sum_probs=62.7
Q ss_pred CCCEEEEECC--CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--CC-CCCccceEEc
Q 017428 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--PF-PDGQFDLVWS 232 (371)
Q Consensus 158 ~~~~VLDlG~--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~-~~~~fD~v~~ 232 (371)
++.+||=.|+ |.|.+++.|++..++.++++--+++..+.+++ .|.+.-+.+...|+.+. .+ ....+|+|+-
T Consensus 142 ~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~----lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D 217 (326)
T COG0604 142 PGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKE----LGADHVINYREEDFVEQVRELTGGKGVDVVLD 217 (326)
T ss_pred CCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHh----cCCCEEEcCCcccHHHHHHHHcCCCCceEEEE
Confidence 3899999984 45778999999887678888777766655444 34322222333332221 11 2246999975
Q ss_pred cccccCcCCHHHHHHHHHHhcCCCcEEEEEecc
Q 017428 233 MESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 233 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
.-. ...+.+..+.|+++|.++.....
T Consensus 218 ~vG-------~~~~~~~l~~l~~~G~lv~ig~~ 243 (326)
T COG0604 218 TVG-------GDTFAASLAALAPGGRLVSIGAL 243 (326)
T ss_pred CCC-------HHHHHHHHHHhccCCEEEEEecC
Confidence 421 35577788999999999997643
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.79 E-value=11 Score=33.10 Aligned_cols=102 Identities=19% Similarity=0.159 Sum_probs=59.6
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCH-HHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC-----C
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSP-VQAQRANALAAARGLADKVSFQVGDALQQP-----FP-----D 224 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~-----~ 224 (371)
+.+||-.|+ +|..+..+++.+ +.+|++++-+. ...+.....++..+ .++.++..|+.+.. +. -
T Consensus 6 ~k~vlItGa-sggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (248)
T PRK07806 6 GKTALVTGS-SRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAG--GRASAVGADLTDEESVAALMDTAREEF 82 (248)
T ss_pred CcEEEEECC-CCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 578898885 455666666554 77888887653 23333333333333 46788899987742 10 1
Q ss_pred CccceEEccccccCcC----------C---HHHHHHHHHHhcCCCcEEEEEe
Q 017428 225 GQFDLVWSMESGEHMP----------D---KSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 225 ~~fD~v~~~~~l~~~~----------~---~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+..|+|+.+....... + ...+++.+.+.++.+|.+++..
T Consensus 83 ~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~is 134 (248)
T PRK07806 83 GGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVT 134 (248)
T ss_pred CCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEe
Confidence 3578877554322110 1 2356677777776677776654
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=86.66 E-value=7.7 Score=37.73 Aligned_cols=88 Identities=17% Similarity=0.168 Sum_probs=55.2
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l 236 (371)
.+.+|+=+|+|. |......++.++++|+.+|.++.....+.. .| ..+ .++.+. -..+|+|+..-
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~----~G----~~v--~~l~ea---l~~aDVVI~aT-- 275 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAM----DG----FRV--MTMEEA---AELGDIFVTAT-- 275 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHh----cC----CEe--cCHHHH---HhCCCEEEECC--
Confidence 478999999985 444444455558899999999876544332 12 221 222221 13579887642
Q ss_pred cCcCCHHHHHH-HHHHhcCCCcEEEEEec
Q 017428 237 EHMPDKSKFVS-ELARVTAPAGTIIIVTW 264 (371)
Q Consensus 237 ~~~~~~~~~l~-~~~~~LkpgG~l~i~~~ 264 (371)
... .++. .....+|+|++++....
T Consensus 276 ---G~~-~vI~~~~~~~mK~GailiNvG~ 300 (425)
T PRK05476 276 ---GNK-DVITAEHMEAMKDGAILANIGH 300 (425)
T ss_pred ---CCH-HHHHHHHHhcCCCCCEEEEcCC
Confidence 222 3454 68889999999888653
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.65 E-value=5.7 Score=35.01 Aligned_cols=75 Identities=19% Similarity=0.134 Sum_probs=50.9
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC-----CC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FP-----DG 225 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~-----~~ 225 (371)
+.+||=.| |+|..+..+++.+ +.+|++++.++..+....+.++..+ .++.++.+|+.+.. +. -+
T Consensus 7 ~~~vlItG-a~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 83 (250)
T PRK12939 7 GKRALVTG-AARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAG--GRAHAIAADLADPASVQRFFDAAAAALG 83 (250)
T ss_pred CCEEEEeC-CCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 57788666 4667777776655 7899999988877666655554433 46889999987642 11 14
Q ss_pred ccceEEccccc
Q 017428 226 QFDLVWSMESG 236 (371)
Q Consensus 226 ~fD~v~~~~~l 236 (371)
..|+|+.+...
T Consensus 84 ~id~vi~~ag~ 94 (250)
T PRK12939 84 GLDGLVNNAGI 94 (250)
T ss_pred CCCEEEECCCC
Confidence 68988876543
|
|
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.27 E-value=7.7 Score=34.59 Aligned_cols=74 Identities=19% Similarity=0.143 Sum_probs=48.6
Q ss_pred CEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CCCc
Q 017428 160 KNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDGQ 226 (371)
Q Consensus 160 ~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~~ 226 (371)
.+||=.| |+|..+..+++.+ +.+|++++.++...+...+.+...+ .++.++..|+.+.. + .-+.
T Consensus 2 ~~vlVtG-asg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 78 (263)
T PRK06181 2 KVVIITG-ASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHG--GEALVVPTDVSDAEACERLIEAAVARFGG 78 (263)
T ss_pred CEEEEec-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 3577666 5566666666554 7899999998876665555554433 47888899987742 0 0135
Q ss_pred cceEEccccc
Q 017428 227 FDLVWSMESG 236 (371)
Q Consensus 227 fD~v~~~~~l 236 (371)
.|+|+.+...
T Consensus 79 id~vi~~ag~ 88 (263)
T PRK06181 79 IDILVNNAGI 88 (263)
T ss_pred CCEEEECCCc
Confidence 7988876544
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.96 E-value=15 Score=34.35 Aligned_cols=75 Identities=23% Similarity=0.153 Sum_probs=51.1
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-C---------CCC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-F---------PDG 225 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~---------~~~ 225 (371)
+.+||=.|+ +|.++..+++.+ |++|+.++-++..++...+.+...+ .++.++..|+.+.. . .-+
T Consensus 8 ~k~vlITGa-s~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g--~~~~~v~~Dv~d~~~v~~~~~~~~~~~g 84 (334)
T PRK07109 8 RQVVVITGA-SAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAG--GEALAVVADVADAEAVQAAADRAEEELG 84 (334)
T ss_pred CCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHHHCC
Confidence 567887775 455556665544 7899999999887776666665544 46888899987742 0 124
Q ss_pred ccceEEccccc
Q 017428 226 QFDLVWSMESG 236 (371)
Q Consensus 226 ~fD~v~~~~~l 236 (371)
..|+++.+...
T Consensus 85 ~iD~lInnAg~ 95 (334)
T PRK07109 85 PIDTWVNNAMV 95 (334)
T ss_pred CCCEEEECCCc
Confidence 68988876544
|
|
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=85.92 E-value=8.7 Score=35.87 Aligned_cols=96 Identities=16% Similarity=0.134 Sum_probs=61.0
Q ss_pred CCCEEEEECC--CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc-CCCC-C-CCCCCccceEEc
Q 017428 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVG-DALQ-Q-PFPDGQFDLVWS 232 (371)
Q Consensus 158 ~~~~VLDlG~--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~-~-~~~~~~fD~v~~ 232 (371)
++.+||=.|+ |.|..+..+++..|++|++++.+++..+.+++. .|...-+..... +..+ . ....+.+|+|+-
T Consensus 151 ~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~~~~gvd~v~d 227 (338)
T cd08295 151 KGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNK---LGFDDAFNYKEEPDLDAALKRYFPNGIDIYFD 227 (338)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCceeEEcCCcccHHHHHHHhCCCCcEEEEE
Confidence 4889998886 467788888888899999999988877776542 232111111111 1111 0 011246888874
Q ss_pred cccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 233 MESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 233 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
.- . ...+..+.+.|+++|.++...
T Consensus 228 ~~-----g--~~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 228 NV-----G--GKMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred CC-----C--HHHHHHHHHHhccCcEEEEec
Confidence 31 1 246788899999999998765
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >TIGR00497 hsdM type I restriction system adenine methylase (hsdM) | Back alignment and domain information |
|---|
Probab=85.82 E-value=16 Score=36.49 Aligned_cols=106 Identities=18% Similarity=0.206 Sum_probs=66.3
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--C---CEEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEEEcCCCCC-CC-CCCccce
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF--G---AKCQGITLSPVQAQRANALAAARGLA-DKVSFQVGDALQQ-PF-PDGQFDL 229 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~--~---~~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~-~~-~~~~fD~ 229 (371)
|...|.|..||+|.+........ + ..++|.+..+.+...+..+..-.+.. +......+|-... .+ ....||.
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~ 296 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEV 296 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCE
Confidence 46789999999999887654432 2 46999999999999998875544432 1222333343221 11 2345777
Q ss_pred EEcccc------------------------ccCcCC-HHHHHHHHHHhcCCCcEEEEEe
Q 017428 230 VWSMES------------------------GEHMPD-KSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 230 v~~~~~------------------------l~~~~~-~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
|+++-- +.+..+ -..++..+..+|++||...++-
T Consensus 297 v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~ 355 (501)
T TIGR00497 297 VVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVC 355 (501)
T ss_pred EeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEe
Confidence 664321 111111 2467888999999999866654
|
Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)). |
| >COG2933 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.81 E-value=5.3 Score=35.79 Aligned_cols=87 Identities=14% Similarity=0.145 Sum_probs=62.7
Q ss_pred CCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccc
Q 017428 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (371)
Q Consensus 157 ~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l 236 (371)
.+++..+|+|+-.|+|+-.+.++ +-.|++||--+-..... -.+.|+....|.....-.....|-.+|..
T Consensus 210 ~~~M~avDLGAcPGGWTyqLVkr-~m~V~aVDng~ma~sL~--------dtg~v~h~r~DGfk~~P~r~~idWmVCDm-- 278 (358)
T COG2933 210 APGMWAVDLGACPGGWTYQLVKR-NMRVYAVDNGPMAQSLM--------DTGQVTHLREDGFKFRPTRSNIDWMVCDM-- 278 (358)
T ss_pred cCCceeeecccCCCccchhhhhc-ceEEEEeccchhhhhhh--------cccceeeeeccCcccccCCCCCceEEeeh--
Confidence 46899999999999999999988 78999999866332221 12468888888777632346678776643
Q ss_pred cCcCCHHHHHHHHHHhcCCC
Q 017428 237 EHMPDKSKFVSELARVTAPA 256 (371)
Q Consensus 237 ~~~~~~~~~l~~~~~~Lkpg 256 (371)
++.+.++-+-+..+|..|
T Consensus 279 --VEkP~rv~~li~~Wl~nG 296 (358)
T COG2933 279 --VEKPARVAALIAKWLVNG 296 (358)
T ss_pred --hcCcHHHHHHHHHHHHcc
Confidence 356677777777777643
|
|
| >cd08300 alcohol_DH_class_III class III alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=85.80 E-value=11 Score=35.82 Aligned_cols=94 Identities=22% Similarity=0.221 Sum_probs=59.3
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc-CCC-CC-----CCCCCccc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVG-DAL-QQ-----PFPDGQFD 228 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~-~~-----~~~~~~fD 228 (371)
++.+||=+|+|. |..+..+++..++ .|+++|.++...+.+++ .|.. .++.. +.. +. ....+.+|
T Consensus 186 ~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~----lGa~---~~i~~~~~~~~~~~~v~~~~~~g~d 258 (368)
T cd08300 186 PGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKK----FGAT---DCVNPKDHDKPIQQVLVEMTDGGVD 258 (368)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCC---EEEcccccchHHHHHHHHHhCCCCc
Confidence 488999888753 5566677777787 79999999998887754 3321 11111 110 00 01223688
Q ss_pred eEEccccccCcCCHHHHHHHHHHhcCCC-cEEEEEec
Q 017428 229 LVWSMESGEHMPDKSKFVSELARVTAPA-GTIIIVTW 264 (371)
Q Consensus 229 ~v~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~ 264 (371)
+|+-.- .. ...+..+.+.|+++ |.+++...
T Consensus 259 ~vid~~-----g~-~~~~~~a~~~l~~~~G~~v~~g~ 289 (368)
T cd08300 259 YTFECI-----GN-VKVMRAALEACHKGWGTSVIIGV 289 (368)
T ss_pred EEEECC-----CC-hHHHHHHHHhhccCCCeEEEEcc
Confidence 887432 11 34677888899997 99888754
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim |
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.79 E-value=9.5 Score=34.11 Aligned_cols=71 Identities=14% Similarity=0.197 Sum_probs=46.0
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC-----CC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FP-----DG 225 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~-----~~ 225 (371)
+.+||=.|+ +|..+..+++.+ |++|+.+|.++..++...+.. ..++.++.+|+.+.. +. -+
T Consensus 6 ~k~vlItGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 79 (261)
T PRK08265 6 GKVAIVTGG-ATLIGAAVARALVAAGARVAIVDIDADNGAAVAASL-----GERARFIATDITDDAAIERAVATVVARFG 79 (261)
T ss_pred CCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCeeEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 567887774 455666666555 789999999876544433322 246888899987742 11 14
Q ss_pred ccceEEcccc
Q 017428 226 QFDLVWSMES 235 (371)
Q Consensus 226 ~fD~v~~~~~ 235 (371)
..|+++.+..
T Consensus 80 ~id~lv~~ag 89 (261)
T PRK08265 80 RVDILVNLAC 89 (261)
T ss_pred CCCEEEECCC
Confidence 6788887654
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.75 E-value=13 Score=32.79 Aligned_cols=76 Identities=20% Similarity=0.119 Sum_probs=51.8
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CCC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDG 225 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~ 225 (371)
+.+||=.| |+|.++..+++.+ +.+|++++.++...+.....+...+ .++.++.+|+.+.. + ..+
T Consensus 4 ~~~vlItG-~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (258)
T PRK12429 4 GKVALVTG-AASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAG--GKAIGVAMDVTDEEAINAGIDYAVETFG 80 (258)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 46788666 5677777777766 7899999998877666555554433 46888999987642 0 013
Q ss_pred ccceEEcccccc
Q 017428 226 QFDLVWSMESGE 237 (371)
Q Consensus 226 ~fD~v~~~~~l~ 237 (371)
.+|+|+.+....
T Consensus 81 ~~d~vi~~a~~~ 92 (258)
T PRK12429 81 GVDILVNNAGIQ 92 (258)
T ss_pred CCCEEEECCCCC
Confidence 589888765443
|
|
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=85.69 E-value=12 Score=34.95 Aligned_cols=91 Identities=13% Similarity=0.130 Sum_probs=58.5
Q ss_pred CEEEEECC--CcChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----CCCCCccceEE
Q 017428 160 KNVVDVGC--GIGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-----PFPDGQFDLVW 231 (371)
Q Consensus 160 ~~VLDlG~--GtG~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~fD~v~ 231 (371)
.+||=.|+ |.|..+..+++..|+ +|++++.+++..+.+++. .|.. .++...-.+. ......+|+|+
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~---lGa~---~vi~~~~~~~~~~i~~~~~~gvd~vi 229 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSE---LGFD---AAINYKTDNVAERLRELCPEGVDVYF 229 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh---cCCc---EEEECCCCCHHHHHHHHCCCCceEEE
Confidence 78988885 567788888888787 799999998877766543 2321 1121111111 01124689887
Q ss_pred ccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 232 SMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 232 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
-.- .. ..+..+.+.|+++|.++...
T Consensus 230 d~~-----g~--~~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 230 DNV-----GG--EISDTVISQMNENSHIILCG 254 (345)
T ss_pred ECC-----Cc--HHHHHHHHHhccCCEEEEEe
Confidence 432 12 23578889999999998764
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases | Back alignment and domain information |
|---|
Probab=85.64 E-value=1.8 Score=40.48 Aligned_cols=93 Identities=18% Similarity=0.186 Sum_probs=59.0
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC---C-C-CCCCccceE
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ---Q-P-FPDGQFDLV 230 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~-~-~~~~~fD~v 230 (371)
++.+||-.|+|. |..+..+++..+.. +++++.++...+.+++ .+. ..++..+-.. + . .....+|+|
T Consensus 159 ~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~----~g~---~~~~~~~~~~~~~~~~~~~~~~~d~v 231 (343)
T cd08236 159 LGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARE----LGA---DDTINPKEEDVEKVRELTEGRGADLV 231 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCC---CEEecCccccHHHHHHHhCCCCCCEE
Confidence 478899998765 66777777777876 9999988887776643 232 1112111000 0 1 122348988
Q ss_pred EccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+... .....+..+.+.|+++|.++...
T Consensus 232 ld~~------g~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 232 IEAA------GSPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred EECC------CCHHHHHHHHHHhhcCCEEEEEc
Confidence 7541 11346788899999999988765
|
This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast |
| >cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=85.41 E-value=9.4 Score=35.18 Aligned_cols=90 Identities=18% Similarity=0.147 Sum_probs=58.0
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l 236 (371)
++.+||=.|+|. |..+..+++..|.++++++.+++..+.+++ .|.. . ..+..+. .....+|+|+-..
T Consensus 155 ~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~----~g~~----~-~~~~~~~-~~~~~~d~vid~~-- 222 (319)
T cd08242 155 PGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARR----LGVE----T-VLPDEAE-SEGGGFDVVVEAT-- 222 (319)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH----cCCc----E-EeCcccc-ccCCCCCEEEECC--
Confidence 478888887642 445555666668889999999988887765 2331 1 1111111 2345689887542
Q ss_pred cCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 237 EHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 237 ~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
.. ...+..+.+.|+++|.+++..
T Consensus 223 ---g~-~~~~~~~~~~l~~~g~~v~~~ 245 (319)
T cd08242 223 ---GS-PSGLELALRLVRPRGTVVLKS 245 (319)
T ss_pred ---CC-hHHHHHHHHHhhcCCEEEEEc
Confidence 11 345778888999999999743
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.34 E-value=1.2 Score=43.32 Aligned_cols=107 Identities=17% Similarity=0.185 Sum_probs=73.1
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-------CCCCCccceE
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-------PFPDGQFDLV 230 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-------~~~~~~fD~v 230 (371)
+..+|-+|-|.|.+...+...+ ...+++|++.|.+++.|+..+.-..- .+..+...|..+. .-.+..||++
T Consensus 296 ~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~-~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl 374 (482)
T KOG2352|consen 296 GGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQS-DRNKVHIADGLDFLQRTAKSQQEDICPDVL 374 (482)
T ss_pred cCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhh-hhhhhhHhhchHHHHHHhhccccccCCcEE
Confidence 5678889999999998887777 58999999999999999987632211 1223333333221 1145679988
Q ss_pred Ec----cccccCcCC------HHHHHHHHHHhcCCCcEEEEEeccCC
Q 017428 231 WS----MESGEHMPD------KSKFVSELARVTAPAGTIIIVTWCHR 267 (371)
Q Consensus 231 ~~----~~~l~~~~~------~~~~l~~~~~~LkpgG~l~i~~~~~~ 267 (371)
.. .. .+.+.. .+.++..+...|.|-|.++|.-.+.+
T Consensus 375 ~~dvds~d-~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~ 420 (482)
T KOG2352|consen 375 MVDVDSKD-SHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRN 420 (482)
T ss_pred EEECCCCC-cccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCC
Confidence 75 22 233321 15788999999999999988765544
|
|
| >TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent | Back alignment and domain information |
|---|
Probab=85.09 E-value=18 Score=34.87 Aligned_cols=101 Identities=19% Similarity=0.158 Sum_probs=60.2
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc---CCCC-C-C-CCCCccce
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVG---DALQ-Q-P-FPDGQFDL 229 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~---d~~~-~-~-~~~~~fD~ 229 (371)
++.+||=.|+|. |..+..+++..+++ |+.+|.++.-++.+++ .|. . .+... +..+ + . .....+|+
T Consensus 185 ~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~----~Ga--~-~v~~~~~~~~~~~v~~~~~~~g~Dv 257 (393)
T TIGR02819 185 PGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARS----FGC--E-TVDLSKDATLPEQIEQILGEPEVDC 257 (393)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH----cCC--e-EEecCCcccHHHHHHHHcCCCCCcE
Confidence 377887788763 66666777766765 5667888877777765 232 1 11111 1100 0 0 12245898
Q ss_pred EEccccccC--------cCCHHHHHHHHHHhcCCCcEEEEEecc
Q 017428 230 VWSMESGEH--------MPDKSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 230 v~~~~~l~~--------~~~~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
|+-.-.-.. ..+....++++.+++++||.+++.-..
T Consensus 258 vid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~ 301 (393)
T TIGR02819 258 AVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLY 301 (393)
T ss_pred EEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeeec
Confidence 875332110 012235789999999999999997653
|
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. |
| >COG1255 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=84.97 E-value=6.6 Score=30.43 Aligned_cols=89 Identities=19% Similarity=0.287 Sum_probs=55.0
Q ss_pred CCEEEEECCCcCh-HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC-CCccceEEccccc
Q 017428 159 PKNVVDVGCGIGG-SSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP-DGQFDLVWSMESG 236 (371)
Q Consensus 159 ~~~VLDlG~GtG~-~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~v~~~~~l 236 (371)
..+|+|+|-|-=. .+..|+++ |..|+++|+.+.- .+..++++..|+.+.... -...|+|++.
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~-g~dv~atDI~~~~------------a~~g~~~v~DDitnP~~~iY~~A~lIYSi--- 77 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAER-GFDVLATDINEKT------------APEGLRFVVDDITNPNISIYEGADLIYSI--- 77 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHc-CCcEEEEeccccc------------CcccceEEEccCCCccHHHhhCccceeec---
Confidence 4599999988654 34555554 8999999998861 224689999999886421 1345777653
Q ss_pred cCcCCHHHHHHHHHHhcCCCcEEEEEecc
Q 017428 237 EHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 237 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
.--++....+-.+.+. -|..++|....
T Consensus 78 RpppEl~~~ildva~a--Vga~l~I~pL~ 104 (129)
T COG1255 78 RPPPELQSAILDVAKA--VGAPLYIKPLT 104 (129)
T ss_pred CCCHHHHHHHHHHHHh--hCCCEEEEecC
Confidence 2223444444444443 34556665543
|
|
| >PLN02178 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=84.71 E-value=4.8 Score=38.49 Aligned_cols=94 Identities=19% Similarity=0.223 Sum_probs=55.8
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHH-HHHHHHHHHHcCCCCCeEEEE-cCCCCCCCCCCccceEEccc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQ-AQRANALAAARGLADKVSFQV-GDALQQPFPDGQFDLVWSME 234 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~~v~gvD~s~~~-~~~a~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~fD~v~~~~ 234 (371)
++.+||=.|+|. |..+..+++..|++|++++.+++. .+.++ ..|.. .++. .+.....-..+.+|+|+-.-
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~----~lGa~---~~i~~~~~~~v~~~~~~~D~vid~~ 250 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAID----RLGAD---SFLVTTDSQKMKEAVGTMDFIIDTV 250 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHH----hCCCc---EEEcCcCHHHHHHhhCCCcEEEECC
Confidence 478888888763 666777788778899999887654 33332 23431 1111 11000000012478876432
Q ss_pred cccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 235 SGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 235 ~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
.. ...+..+.+.|++||.++....
T Consensus 251 -----G~-~~~~~~~~~~l~~~G~iv~vG~ 274 (375)
T PLN02178 251 -----SA-EHALLPLFSLLKVSGKLVALGL 274 (375)
T ss_pred -----Cc-HHHHHHHHHhhcCCCEEEEEcc
Confidence 11 2357788899999999988753
|
|
| >cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=84.71 E-value=4.8 Score=37.82 Aligned_cols=94 Identities=19% Similarity=0.145 Sum_probs=59.2
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----C-CCCCccce
Q 017428 158 RPKNVVDVGCG-IGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-----P-FPDGQFDL 229 (371)
Q Consensus 158 ~~~~VLDlG~G-tG~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~-~~~~~fD~ 229 (371)
++.+||=.|+| .|..+..+++..+. .++++|.++...+.+++ .|.. .++...-.+. . .....+|+
T Consensus 166 ~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~---~~v~~~~~~~~~~i~~~~~~~~~d~ 238 (351)
T cd08285 166 LGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE----YGAT---DIVDYKNGDVVEQILKLTGGKGVDA 238 (351)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCc---eEecCCCCCHHHHHHHHhCCCCCcE
Confidence 47889988876 35666777776676 59999999887777664 3321 1111111111 0 12345898
Q ss_pred EEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 230 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
|+-... . ...+..+.+.|+++|.++....
T Consensus 239 vld~~g-----~-~~~~~~~~~~l~~~G~~v~~g~ 267 (351)
T cd08285 239 VIIAGG-----G-QDTFEQALKVLKPGGTISNVNY 267 (351)
T ss_pred EEECCC-----C-HHHHHHHHHHhhcCCEEEEecc
Confidence 874321 1 3567889999999999887653
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=84.67 E-value=18 Score=31.79 Aligned_cols=74 Identities=19% Similarity=0.209 Sum_probs=48.6
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-C---------CCC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-F---------PDG 225 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~---------~~~ 225 (371)
+.+||=+|+ +|..+..+++.+ +.+|++++-++...+.....+.. ..++.++.+|+.+.. + ..+
T Consensus 5 ~~~vlItGa-sg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (251)
T PRK07231 5 GKVAIVTGA-SSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA---GGRAIAVAADVSDEADVEAAVAAALERFG 80 (251)
T ss_pred CcEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc---CCeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 567887775 455555555544 78999999998776655544433 245888999987742 1 113
Q ss_pred ccceEEccccc
Q 017428 226 QFDLVWSMESG 236 (371)
Q Consensus 226 ~fD~v~~~~~l 236 (371)
.+|+|+.+...
T Consensus 81 ~~d~vi~~ag~ 91 (251)
T PRK07231 81 SVDILVNNAGT 91 (251)
T ss_pred CCCEEEECCCC
Confidence 57988876554
|
|
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=84.41 E-value=1.1 Score=42.71 Aligned_cols=63 Identities=21% Similarity=0.260 Sum_probs=51.5
Q ss_pred cCCCCCeEEEEcCCCCC--CCCCCccceEEccccccCcCC--HHHHHHHHHHhcCCCcEEEEEeccCC
Q 017428 204 RGLADKVSFQVGDALQQ--PFPDGQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVTWCHR 267 (371)
Q Consensus 204 ~~~~~~v~~~~~d~~~~--~~~~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~ 267 (371)
.++ ++++++.+++.+. ..+++++|.++....+.++++ ....++++.+.++|||++++=.....
T Consensus 272 ~~~-drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~ 338 (380)
T PF11899_consen 272 ARL-DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVP 338 (380)
T ss_pred cCC-CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCC
Confidence 345 7899999998774 256799999999999988865 47889999999999999999765433
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=84.31 E-value=15 Score=34.80 Aligned_cols=97 Identities=21% Similarity=0.249 Sum_probs=58.3
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC--CC-C-CCCCCccceEE
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDA--LQ-Q-PFPDGQFDLVW 231 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~--~~-~-~~~~~~fD~v~ 231 (371)
++.+||=+|+|. |..+..+++..++ +|+++|.++...+.+++ .|...-+.....+. .+ . ....+.+|+|+
T Consensus 184 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~~~~~~~~~g~d~vi 259 (365)
T cd08277 184 PGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKE----FGATDFINPKDSDKPVSEVIREMTGGGVDYSF 259 (365)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCCcEeccccccchHHHHHHHHhCCCCCEEE
Confidence 488999888753 5566667777777 79999999988887754 23210011110000 00 0 01124588887
Q ss_pred ccccccCcCCHHHHHHHHHHhcCCC-cEEEEEec
Q 017428 232 SMESGEHMPDKSKFVSELARVTAPA-GTIIIVTW 264 (371)
Q Consensus 232 ~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~ 264 (371)
-.- .. ...+..+.+.|+++ |.+++...
T Consensus 260 d~~-----g~-~~~~~~~~~~l~~~~G~~v~~g~ 287 (365)
T cd08277 260 ECT-----GN-ADLMNEALESTKLGWGVSVVVGV 287 (365)
T ss_pred ECC-----CC-hHHHHHHHHhcccCCCEEEEEcC
Confidence 432 11 24677888899886 99888754
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i |
| >cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase | Back alignment and domain information |
|---|
Probab=83.85 E-value=12 Score=36.12 Aligned_cols=99 Identities=16% Similarity=0.119 Sum_probs=59.0
Q ss_pred CCCEEEEEC-CC-cChHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC---C-----C-CC
Q 017428 158 RPKNVVDVG-CG-IGGSSRYLAKKFGA---KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ---Q-----P-FP 223 (371)
Q Consensus 158 ~~~~VLDlG-~G-tG~~~~~l~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~-----~-~~ 223 (371)
++.+||=+| +| .|..+..+++..+. +|+++|.++..++.+++................|..+ . . ..
T Consensus 175 ~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~t~ 254 (410)
T cd08238 175 PGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLMELTG 254 (410)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHHHHhC
Confidence 478899887 34 57778888877543 7999999999998887742110000012211112211 1 0 12
Q ss_pred CCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEE
Q 017428 224 DGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262 (371)
Q Consensus 224 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 262 (371)
...+|+|+.... . ...+....+.++++|.+++.
T Consensus 255 g~g~D~vid~~g-----~-~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 255 GQGFDDVFVFVP-----V-PELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred CCCCCEEEEcCC-----C-HHHHHHHHHHhccCCeEEEE
Confidence 245888875321 1 35678889999988876654
|
L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found |
| >cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH) | Back alignment and domain information |
|---|
Probab=83.48 E-value=15 Score=34.68 Aligned_cols=93 Identities=25% Similarity=0.155 Sum_probs=57.1
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--------C-CCCCc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--------P-FPDGQ 226 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--------~-~~~~~ 226 (371)
++.+||=.|+|. |..+..+++..+. +|++++.++...+.+++ .|.. .++..+-... . .....
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~~i~~~~~~~~ 249 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELARE----FGAD---ATIDIDELPDPQRRAIVRDITGGRG 249 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCC---eEEcCcccccHHHHHHHHHHhCCCC
Confidence 477888888652 5556667776688 89999988877666543 3431 1111110000 0 12246
Q ss_pred cceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 227 FDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 227 fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+|+|+-... . ...+....+.|+++|.++...
T Consensus 250 ~d~vid~~g-----~-~~~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 250 ADVVIEASG-----H-PAAVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred CcEEEECCC-----C-hHHHHHHHHHhccCCEEEEEc
Confidence 898874321 1 245778889999999998765
|
This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino |
| >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures [] | Back alignment and domain information |
|---|
Probab=83.48 E-value=4.9 Score=36.26 Aligned_cols=63 Identities=17% Similarity=0.147 Sum_probs=41.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF------GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP 221 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 221 (371)
++..++|+|||.|.++..++..+ ...++.||-...-. .+..++......+.+.=+..|+.++.
T Consensus 18 ~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riDI~dl~ 86 (259)
T PF05206_consen 18 PDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESEPKFERLRIDIKDLD 86 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCCCceEEEEEEeeccc
Confidence 47799999999999999999876 25789999865333 23333333321124566666776653
|
The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing |
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=83.43 E-value=27 Score=30.97 Aligned_cols=77 Identities=14% Similarity=0.082 Sum_probs=50.1
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----------CCCC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----------FPDG 225 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~~~~ 225 (371)
++++|=.|++ |..+..+++.+ +.+|+.++.+++.++...+.+.......++.++..|+.+.. -.-+
T Consensus 9 ~k~~lItGa~-~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 87 (257)
T PRK09242 9 GQTALITGAS-KGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHWD 87 (257)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 5788888864 44455555444 78999999988777666655544311246788899987631 0125
Q ss_pred ccceEEccccc
Q 017428 226 QFDLVWSMESG 236 (371)
Q Consensus 226 ~fD~v~~~~~l 236 (371)
..|+|+.+...
T Consensus 88 ~id~li~~ag~ 98 (257)
T PRK09242 88 GLHILVNNAGG 98 (257)
T ss_pred CCCEEEECCCC
Confidence 68988876654
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.37 E-value=20 Score=32.75 Aligned_cols=102 Identities=19% Similarity=0.145 Sum_probs=59.6
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHH-HHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC-----C
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPV-QAQRANALAAARGLADKVSFQVGDALQQP-----FP-----D 224 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~-~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~-----~ 224 (371)
+++||=.|+ +|.++..+++.+ +.+|+.++.++. ..+.....++..+ .++.++..|+.+.. +. -
T Consensus 46 ~k~iLItGa-sggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~i~~~~ 122 (290)
T PRK06701 46 GKVALITGG-DSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEG--VKCLLIPGDVSDEAFCKDAVEETVREL 122 (290)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 577888885 455555555544 788998887642 3333333343333 46788899987642 11 1
Q ss_pred CccceEEccccccCc----CC----------------HHHHHHHHHHhcCCCcEEEEEe
Q 017428 225 GQFDLVWSMESGEHM----PD----------------KSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 225 ~~fD~v~~~~~l~~~----~~----------------~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+..|+|+.+...... .+ .-.+++.+.+.++++|.+++..
T Consensus 123 ~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~is 181 (290)
T PRK06701 123 GRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTG 181 (290)
T ss_pred CCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 457888765443211 11 1234555566667778877765
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=83.20 E-value=8.7 Score=35.46 Aligned_cols=90 Identities=20% Similarity=0.221 Sum_probs=53.3
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l 236 (371)
.+.+|+=+|.|. |..+...+..++++|+.+|.++...+.++. .+ ..+. +..++...-..+|+|+..-
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~----~G----~~~~--~~~~l~~~l~~aDiVI~t~-- 218 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITE----MG----LSPF--HLSELAEEVGKIDIIFNTI-- 218 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----cC----Ceee--cHHHHHHHhCCCCEEEECC--
Confidence 378999999875 333444444458999999999876555443 22 2222 1112111124689998742
Q ss_pred cCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 237 EHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 237 ~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+. .-+-+++.+.++||+.++-..
T Consensus 219 ---p~-~~i~~~~l~~~~~g~vIIDla 241 (296)
T PRK08306 219 ---PA-LVLTKEVLSKMPPEALIIDLA 241 (296)
T ss_pred ---Ch-hhhhHHHHHcCCCCcEEEEEc
Confidence 11 123456677889988766543
|
|
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=83.10 E-value=9.9 Score=35.21 Aligned_cols=98 Identities=19% Similarity=0.122 Sum_probs=58.7
Q ss_pred CCCCEEEEECC-CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---CCCCccceEEc
Q 017428 157 KRPKNVVDVGC-GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---FPDGQFDLVWS 232 (371)
Q Consensus 157 ~~~~~VLDlG~-GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~v~~ 232 (371)
.|+.+|-=+|. |-|.++..+++.++.+|+++|-+..--+.+-+. .| .+.++.-.++.. --.+..|.++-
T Consensus 180 ~pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~---LG----Ad~fv~~~~d~d~~~~~~~~~dg~~~ 252 (360)
T KOG0023|consen 180 GPGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKS---LG----ADVFVDSTEDPDIMKAIMKTTDGGID 252 (360)
T ss_pred CCCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHh---cC----cceeEEecCCHHHHHHHHHhhcCcce
Confidence 35888777764 479999999999999999999997555544433 33 222222221211 00133343321
Q ss_pred cccccCcCCHHHHHHHHHHhcCCCcEEEEEecc
Q 017428 233 MESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 233 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
.- ..+ ....+..+.+.||++|.++++...
T Consensus 253 ~v--~~~--a~~~~~~~~~~lk~~Gt~V~vg~p 281 (360)
T KOG0023|consen 253 TV--SNL--AEHALEPLLGLLKVNGTLVLVGLP 281 (360)
T ss_pred ee--eec--cccchHHHHHHhhcCCEEEEEeCc
Confidence 10 000 123467788899999999998754
|
|
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.90 E-value=21 Score=32.22 Aligned_cols=98 Identities=20% Similarity=0.221 Sum_probs=61.1
Q ss_pred EEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C----CCCccce
Q 017428 161 NVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F----PDGQFDL 229 (371)
Q Consensus 161 ~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~----~~~~fD~ 229 (371)
.+|=-|+ |..+..+++.+ +.+|+.+|.++..++...+.++..+ .++.++..|+.+.. + ..+..|+
T Consensus 4 ~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~ 79 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG--FDVSTQEVDVSSRESVKALAATAQTLGPVTG 79 (275)
T ss_pred EEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHhcCCCCE
Confidence 4555564 46777777766 7899999998876665555554433 36788889987742 1 1256899
Q ss_pred EEccccccCc-CCHH-----------HHHHHHHHhcCCCcEEEEE
Q 017428 230 VWSMESGEHM-PDKS-----------KFVSELARVTAPAGTIIIV 262 (371)
Q Consensus 230 v~~~~~l~~~-~~~~-----------~~l~~~~~~LkpgG~l~i~ 262 (371)
++.+..+... .++. .+++.+.+.++.+|.+++.
T Consensus 80 li~nAG~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~i 124 (275)
T PRK06940 80 LVHTAGVSPSQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVI 124 (275)
T ss_pred EEECCCcCCchhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEE
Confidence 8876654322 2222 2355556666666665554
|
|
| >cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=82.88 E-value=16 Score=33.70 Aligned_cols=89 Identities=17% Similarity=0.183 Sum_probs=56.3
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l 236 (371)
++.+||=.|+|. |..+..+++..+.+|+.++.++...+.+++ .|. .... +.... +...+|+++....
T Consensus 167 ~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~----~g~----~~~~-~~~~~--~~~~vD~vi~~~~- 234 (329)
T cd08298 167 PGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELARE----LGA----DWAG-DSDDL--PPEPLDAAIIFAP- 234 (329)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHH----hCC----cEEe-ccCcc--CCCcccEEEEcCC-
Confidence 367888787653 444555666668899999998877766643 232 1111 11111 2345888764321
Q ss_pred cCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 237 EHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 237 ~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
....+..+.+.|+++|.+++..
T Consensus 235 -----~~~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 235 -----VGALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred -----cHHHHHHHHHHhhcCCEEEEEc
Confidence 1246888999999999999765
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha |
| >PLN02514 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=82.18 E-value=10 Score=35.91 Aligned_cols=96 Identities=17% Similarity=0.129 Sum_probs=56.0
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccc
Q 017428 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (371)
Q Consensus 158 ~~~~VLDlG~G-tG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l 236 (371)
++.+||=.|+| .|..+..+++..+.+++.++.++.....+.+. .|.. ..+...+...+.-....+|+|+-.-
T Consensus 180 ~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~---~Ga~--~~i~~~~~~~~~~~~~~~D~vid~~-- 252 (357)
T PLN02514 180 SGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEH---LGAD--DYLVSSDAAEMQEAADSLDYIIDTV-- 252 (357)
T ss_pred CCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHh---cCCc--EEecCCChHHHHHhcCCCcEEEECC--
Confidence 47788888765 36667777777788899998887655444322 3321 1111111000100012478776432
Q ss_pred cCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 237 EHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 237 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
.. ...+..+.+.|++||.++....
T Consensus 253 ---g~-~~~~~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 253 ---PV-FHPLEPYLSLLKLDGKLILMGV 276 (357)
T ss_pred ---Cc-hHHHHHHHHHhccCCEEEEECC
Confidence 11 2467778899999999988754
|
|
| >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.15 E-value=11 Score=37.56 Aligned_cols=81 Identities=17% Similarity=0.217 Sum_probs=63.0
Q ss_pred CCEEEEECCCcChHHHHHHHHc----CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CCCCccce
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF----GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FPDGQFDL 229 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~~fD~ 229 (371)
+++||--| |+|..+..++++. ..+++.+|.++..+...+..+...--..++.++.+|+.+.. +.+-+.|+
T Consensus 250 gK~vLVTG-agGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kvd~ 328 (588)
T COG1086 250 GKTVLVTG-GGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKVDI 328 (588)
T ss_pred CCEEEEeC-CCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCCce
Confidence 56777666 6788888887766 47899999999988888777766422357899999998853 44567999
Q ss_pred EEccccccCcC
Q 017428 230 VWSMESGEHMP 240 (371)
Q Consensus 230 v~~~~~l~~~~ 240 (371)
|+-..++-|+|
T Consensus 329 VfHAAA~KHVP 339 (588)
T COG1086 329 VFHAAALKHVP 339 (588)
T ss_pred EEEhhhhccCc
Confidence 99999999985
|
|
| >PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases | Back alignment and domain information |
|---|
Probab=82.11 E-value=4.6 Score=37.03 Aligned_cols=74 Identities=19% Similarity=0.198 Sum_probs=46.0
Q ss_pred CCcChHHHHHHHHc----CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEE----EEcCCCCCC-----CCCCccceEEcc
Q 017428 167 CGIGGSSRYLAKKF----GAKCQGITLSPVQAQRANALAAARGLADKVSF----QVGDALQQP-----FPDGQFDLVWSM 233 (371)
Q Consensus 167 ~GtG~~~~~l~~~~----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~----~~~d~~~~~-----~~~~~fD~v~~~ 233 (371)
.|+|..+..+.+++ ..+++.+|.++..+-..+..+....-.+++.+ +.+|+.+.. +.....|+|+-.
T Consensus 5 Ga~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdiVfHa 84 (293)
T PF02719_consen 5 GAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPDIVFHA 84 (293)
T ss_dssp TTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-SEEEE-
T ss_pred ccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCCEEEEC
Confidence 47889999998877 36899999999998888887754322234654 488887742 555689999999
Q ss_pred ccccCcC
Q 017428 234 ESGEHMP 240 (371)
Q Consensus 234 ~~l~~~~ 240 (371)
.++-|++
T Consensus 85 AA~KhVp 91 (293)
T PF02719_consen 85 AALKHVP 91 (293)
T ss_dssp -----HH
T ss_pred hhcCCCC
Confidence 9998883
|
The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A. |
| >cd08301 alcohol_DH_plants Plant alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=82.00 E-value=21 Score=33.75 Aligned_cols=94 Identities=17% Similarity=0.223 Sum_probs=58.5
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC--CCC-----CCCCCccc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDA--LQQ-----PFPDGQFD 228 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~--~~~-----~~~~~~fD 228 (371)
++.+||=.|+|. |..+..+++..++ +|+++|.+++..+.+++ .|.. .++..+- ... ....+.+|
T Consensus 187 ~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~----~Ga~---~~i~~~~~~~~~~~~v~~~~~~~~d 259 (369)
T cd08301 187 KGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKK----FGVT---EFVNPKDHDKPVQEVIAEMTGGGVD 259 (369)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCc---eEEcccccchhHHHHHHHHhCCCCC
Confidence 488999998753 5566677777777 79999999988887754 3321 1111110 000 01123578
Q ss_pred eEEccccccCcCCHHHHHHHHHHhcCCC-cEEEEEec
Q 017428 229 LVWSMESGEHMPDKSKFVSELARVTAPA-GTIIIVTW 264 (371)
Q Consensus 229 ~v~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~ 264 (371)
+|+-.- .. ...+..+.+.+++| |.+++...
T Consensus 260 ~vid~~-----G~-~~~~~~~~~~~~~~~g~~v~~g~ 290 (369)
T cd08301 260 YSFECT-----GN-IDAMISAFECVHDGWGVTVLLGV 290 (369)
T ss_pred EEEECC-----CC-hHHHHHHHHHhhcCCCEEEEECc
Confidence 776431 11 34667788899996 99888764
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the |
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=81.95 E-value=26 Score=31.20 Aligned_cols=102 Identities=15% Similarity=0.105 Sum_probs=60.9
Q ss_pred CCEEEEECCCc-ChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------C--CC
Q 017428 159 PKNVVDVGCGI-GGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------F--PD 224 (371)
Q Consensus 159 ~~~VLDlG~Gt-G~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~--~~ 224 (371)
++.+|=.|+++ +..+..+++.+ |++|+.++.+....+..++..+..+ .+.++..|+.+.. . .-
T Consensus 10 ~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~---~~~~~~~D~~~~~~v~~~~~~~~~~~ 86 (258)
T PRK07533 10 GKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELD---APIFLPLDVREPGQLEAVFARIAEEW 86 (258)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhc---cceEEecCcCCHHHHHHHHHHHHHHc
Confidence 67899999876 36666666655 7899888887654333333322222 3456778887642 0 12
Q ss_pred CccceEEccccccC-------cC-----CHH-----------HHHHHHHHhcCCCcEEEEEe
Q 017428 225 GQFDLVWSMESGEH-------MP-----DKS-----------KFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 225 ~~fD~v~~~~~l~~-------~~-----~~~-----------~~l~~~~~~LkpgG~l~i~~ 263 (371)
+..|+++.+..+.. +. ++. .+.+.+...++.+|.++...
T Consensus 87 g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~is 148 (258)
T PRK07533 87 GRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMS 148 (258)
T ss_pred CCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEe
Confidence 56899887754422 11 112 22455666777788877654
|
|
| >cd05281 TDH Threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=81.79 E-value=17 Score=33.98 Aligned_cols=96 Identities=22% Similarity=0.264 Sum_probs=56.2
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--CCCCCccceEEcc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--PFPDGQFDLVWSM 233 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD~v~~~ 233 (371)
++.+||-.|+|. |..+..+++..+. .|++++-++...+.+++ .+...-+.....+.... ....+.+|+|+-.
T Consensus 163 ~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~vd~vld~ 238 (341)
T cd05281 163 SGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKK----MGADVVINPREEDVVEVKSVTDGTGVDVVLEM 238 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCcceeeCcccccHHHHHHHcCCCCCCEEEEC
Confidence 467888777654 6667777777777 78888877766665553 23210010001111000 0123568888753
Q ss_pred ccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 234 ESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 234 ~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
-. ....+.++.+.|+++|.++...
T Consensus 239 ~g------~~~~~~~~~~~l~~~G~~v~~g 262 (341)
T cd05281 239 SG------NPKAIEQGLKALTPGGRVSILG 262 (341)
T ss_pred CC------CHHHHHHHHHHhccCCEEEEEc
Confidence 21 1345778889999999988764
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=81.55 E-value=8.8 Score=35.73 Aligned_cols=94 Identities=22% Similarity=0.209 Sum_probs=58.0
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---CCCCccceEEcc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---FPDGQFDLVWSM 233 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~v~~~ 233 (371)
++.+||=.|+|. |..+..+++..+.+++.++.++...+.+++ .|. -.++...-.+.. .....+|+|+..
T Consensus 163 ~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~----~g~---~~~i~~~~~~~~~~~~~~~~~d~vi~~ 235 (333)
T cd08296 163 PGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARK----LGA---HHYIDTSKEDVAEALQELGGAKLILAT 235 (333)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH----cCC---cEEecCCCccHHHHHHhcCCCCEEEEC
Confidence 377898888653 556667777778899999999887777754 232 111111111110 001347888742
Q ss_pred ccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 234 ESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 234 ~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
. . ....+..+.+.|+++|.++....
T Consensus 236 ~-----g-~~~~~~~~~~~l~~~G~~v~~g~ 260 (333)
T cd08296 236 A-----P-NAKAISALVGGLAPRGKLLILGA 260 (333)
T ss_pred C-----C-chHHHHHHHHHcccCCEEEEEec
Confidence 1 1 13467788999999999887653
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal |
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=81.54 E-value=23 Score=32.42 Aligned_cols=102 Identities=20% Similarity=0.190 Sum_probs=60.2
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHH--HHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----C
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPV--QAQRANALAAARGLADKVSFQVGDALQQP-----F-----P 223 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~--~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 223 (371)
+++||=.|+ +|.++..+++.+ |++|+.+..+.. ..+...+.+...+ .++.++.+|+.+.. + .
T Consensus 55 ~k~vlITGa-s~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~ 131 (300)
T PRK06128 55 GRKALITGA-DSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEG--RKAVALPGDLKDEAFCRQLVERAVKE 131 (300)
T ss_pred CCEEEEecC-CCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHHHHHH
Confidence 578888885 555566666555 788887765432 2233333333333 35778889987742 0 0
Q ss_pred CCccceEEccccccC----cC-----CH-----------HHHHHHHHHhcCCCcEEEEEe
Q 017428 224 DGQFDLVWSMESGEH----MP-----DK-----------SKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 224 ~~~fD~v~~~~~l~~----~~-----~~-----------~~~l~~~~~~LkpgG~l~i~~ 263 (371)
-+..|+++.+..... +. ++ -.+++.+.+.++++|.++...
T Consensus 132 ~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~s 191 (300)
T PRK06128 132 LGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTG 191 (300)
T ss_pred hCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEEC
Confidence 146899887665421 11 11 135566667778888877754
|
|
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=80.93 E-value=20 Score=32.02 Aligned_cols=104 Identities=15% Similarity=0.111 Sum_probs=60.1
Q ss_pred CCEEEEECCCc-ChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------C--CC
Q 017428 159 PKNVVDVGCGI-GGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------F--PD 224 (371)
Q Consensus 159 ~~~VLDlG~Gt-G~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~--~~ 224 (371)
++.+|=.|++. +..+..+++.+ |++|+.++.+....+..++...... ..++.++..|+.+.. . .-
T Consensus 7 ~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 85 (257)
T PRK08594 7 GKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLE-GQESLLLPCDVTSDEEITACFETIKEEV 85 (257)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcC-CCceEEEecCCCCHHHHHHHHHHHHHhC
Confidence 67899999873 66677776665 7888888654322222222222211 246778889987742 0 12
Q ss_pred CccceEEccccccC-------cC--CHH--------------HHHHHHHHhcCCCcEEEEEe
Q 017428 225 GQFDLVWSMESGEH-------MP--DKS--------------KFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 225 ~~fD~v~~~~~l~~-------~~--~~~--------------~~l~~~~~~LkpgG~l~i~~ 263 (371)
+.+|+++.+..+.. +. +.+ .+.+.+...++++|.++...
T Consensus 86 g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~is 147 (257)
T PRK08594 86 GVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLT 147 (257)
T ss_pred CCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEc
Confidence 67898876544321 11 111 12345566777788877665
|
|
| >cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase | Back alignment and domain information |
|---|
Probab=80.83 E-value=7.3 Score=36.57 Aligned_cols=92 Identities=20% Similarity=0.192 Sum_probs=58.5
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------CCCCcc
Q 017428 158 RPKNVVDVGCG-IGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------FPDGQF 227 (371)
Q Consensus 158 ~~~~VLDlG~G-tG~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~~f 227 (371)
++.+||=.|+| .|..+..+++..+. .|++++.+++..+.+++ .|. .... |..+.. .....+
T Consensus 172 ~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~----~ga----~~~i-~~~~~~~~~~l~~~~~~~~~ 242 (351)
T cd08233 172 PGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEE----LGA----TIVL-DPTEVDVVAEVRKLTGGGGV 242 (351)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCC----CEEE-CCCccCHHHHHHHHhCCCCC
Confidence 47888888764 35556667776677 89999999988877754 232 1111 211111 122348
Q ss_pred ceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 228 DLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 228 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
|+|+-... . ...++.+.+.|+++|.++....
T Consensus 243 d~vid~~g-----~-~~~~~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 243 DVSFDCAG-----V-QATLDTAIDALRPRGTAVNVAI 273 (351)
T ss_pred CEEEECCC-----C-HHHHHHHHHhccCCCEEEEEcc
Confidence 98875421 1 2467888999999999888754
|
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. |
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=80.44 E-value=5.3 Score=37.98 Aligned_cols=106 Identities=18% Similarity=0.207 Sum_probs=70.3
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHc-CCCCCeEEEEcCCCCCC---------------
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAAR-GLADKVSFQVGDALQQP--------------- 221 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~-~~~~~v~~~~~d~~~~~--------------- 221 (371)
..++||.+|+.+.....+++.+ ..+--|+++..+.+..+..+-.+. ....+..+..+|....+
T Consensus 181 ~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~~~~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~~~ 260 (364)
T KOG1269|consen 181 GVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIKTAKLKKPNSEHVDILLEIEGGDALPAETFNTDVFDLLKSFGF 260 (364)
T ss_pred cEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHHHhhhccCCCcccccccCceeccccccceeccccHHHHHhhccc
Confidence 5789999999999999999987 455667888887777665543321 12223455555543321
Q ss_pred --------------CCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCC
Q 017428 222 --------------FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHR 267 (371)
Q Consensus 222 --------------~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 267 (371)
++...+|. +.++-|+.+...++......++|+|.+++.+....
T Consensus 261 ~~~~~~~dl~~~~s~~w~~~~~---~~~~~~~~~~~~~f~~~~~~~~~~~~v~~~e~~~~ 317 (364)
T KOG1269|consen 261 EHLKLEKDLALKSSFPWNTPLT---RDTITHWQDKSALFRGRVATLKPGGKVLILEYIRG 317 (364)
T ss_pred hhhhhcccccCCCccccccccc---hhheeecccccHHHHhHhhccCcCceEEehhhcCc
Confidence 11222332 34555666667788899999999999999886543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 371 | ||||
| 3bus_A | 273 | Crystal Structure Of Rebm Length = 273 | 8e-20 | ||
| 2o57_A | 297 | Crystal Structure Of A Putative Sarcosine Dimethylg | 2e-15 | ||
| 3ujd_A | 266 | Phosphoethanolamine Methyltransferase Mutant (Y19f) | 1e-11 | ||
| 3uj7_A | 266 | Phosphoethanolamine Methyltransferase From Plasmodi | 1e-11 | ||
| 3uj6_A | 266 | Semet Phosphoethanolamine Methyltransferase From Pl | 1e-11 | ||
| 3ujc_A | 266 | Phosphoethanolamine Methyltransferase Mutant (H132a | 6e-11 | ||
| 3vc1_A | 312 | Crystal Structure Of Geranyl Diphosphate C-Methyltr | 6e-08 | ||
| 4f84_A | 320 | Structure Analysis Of Geranyl Diphosphate Methyltra | 9e-08 | ||
| 1ve3_A | 227 | Crystal Structure Of Ph0226 Protein From Pyrococcus | 4e-06 | ||
| 1vl5_A | 260 | Crystal Structure Of A Putative Methyltransferase ( | 4e-05 | ||
| 1xxl_A | 239 | The Crystal Structure Of Ycgj Protein From Bacillus | 8e-05 | ||
| 3mgg_A | 276 | Crystal Structure Of Methyl Transferase From Methan | 2e-04 | ||
| 3f4k_A | 257 | Crystal Structure Of A Probable Methyltransferase F | 3e-04 | ||
| 3svz_A | 263 | Crystal Structure Of Apo Bt_2972, A Methyltransfera | 3e-04 | ||
| 3dh0_A | 219 | Crystal Structure Of A Sam Dependent Methyltransfer | 6e-04 |
| >pdb|3BUS|A Chain A, Crystal Structure Of Rebm Length = 273 | Back alignment and structure |
|
| >pdb|2O57|A Chain A, Crystal Structure Of A Putative Sarcosine Dimethylglycine Methyltransferase From Galdieria Sulphuraria Length = 297 | Back alignment and structure |
|
| >pdb|3UJD|A Chain A, Phosphoethanolamine Methyltransferase Mutant (Y19f) From Plasmodium Falciparum In Complex With Phosphocholine Length = 266 | Back alignment and structure |
|
| >pdb|3UJ7|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium Falciparum In Complex With Sam And Po4 Length = 266 | Back alignment and structure |
|
| >pdb|3UJ6|A Chain A, Semet Phosphoethanolamine Methyltransferase From Plasmodium Falciparum In Complex With Sam And Po4 Length = 266 | Back alignment and structure |
|
| >pdb|3UJC|A Chain A, Phosphoethanolamine Methyltransferase Mutant (H132a) From Plasmodium Falciparum In Complex With Phosphocholine Length = 266 | Back alignment and structure |
|
| >pdb|3VC1|A Chain A, Crystal Structure Of Geranyl Diphosphate C-Methyltransferase From Streptomyces Coelicolor A3(2) In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And S-Adenosyl-L-Homocysteine Length = 312 | Back alignment and structure |
|
| >pdb|4F84|A Chain A, Structure Analysis Of Geranyl Diphosphate Methyltransferase In Complex With Sam Length = 320 | Back alignment and structure |
|
| >pdb|1VE3|A Chain A, Crystal Structure Of Ph0226 Protein From Pyrococcus Horikoshii Ot3 Length = 227 | Back alignment and structure |
|
| >pdb|1VL5|A Chain A, Crystal Structure Of A Putative Methyltransferase (Bh2331) From Bacillus Halodurans C-125 At 1.95 A Resolution Length = 260 | Back alignment and structure |
|
| >pdb|1XXL|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus Subitilis At 2.1 A Resolution Length = 239 | Back alignment and structure |
|
| >pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From Methanosarcina Mazei Length = 276 | Back alignment and structure |
|
| >pdb|3F4K|A Chain A, Crystal Structure Of A Probable Methyltransferase From Bacteroides Thetaiotaomicron. Northeast Structural Genomics Target Btr309 Length = 257 | Back alignment and structure |
|
| >pdb|3SVZ|A Chain A, Crystal Structure Of Apo Bt_2972, A Methyltransferase From Bacteroides Thetaiotaomicron Length = 263 | Back alignment and structure |
|
| >pdb|3DH0|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase From Aquifex Aeolicus Length = 219 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 268 bits (686), Expect = 7e-89
Identities = 68/259 (26%), Positives = 110/259 (42%), Gaps = 14/259 (5%)
Query: 92 ARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGV 151
A E + + YD+ + + IWG+++H G++E + A R+ +E + V
Sbjct: 2 AAPTPEEVRQMYDDFTDPFARIWGENLHFGYWEDAGADV--SVDDATDRLTDEMIALLDV 59
Query: 152 SEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVS 211
V+DVGCGIG + LA + GI++S Q +ANA A A GLA++V+
Sbjct: 60 RSG-----DRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVT 114
Query: 212 FQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAP 271
F DA+ PF D FD VW++ES HMPD+ + + E+ARV P GT+ I +
Sbjct: 115 FSYADAMDLPFEDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFVLLAPVE 174
Query: 272 SEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPAVI 331
++E + + + +Y ++ L D S P
Sbjct: 175 ------GAKKEAVDAFRAGGGVLSLGGIDEYESDVRQAELVVTSTVDISAQARPSLVKTA 228
Query: 332 HSALT-WKGFTSLLRTEIF 349
+ + E
Sbjct: 229 EAFENARSQVEPFMGAEGL 247
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 260 bits (666), Expect = 1e-85
Identities = 63/273 (23%), Positives = 109/273 (39%), Gaps = 16/273 (5%)
Query: 82 TSTTTMSDAAARELKEGIAEFYD--ESSSLWEDIWGD-HMHHGFYEPDSSVSVSDHRAAQ 138
++ + A ++ +K+ +YD +S + +WG +H G Y+ + R A
Sbjct: 6 SNGQSQPAATSKTVKDNAEIYYDDDDSDRFYFHVWGGEDIHVGLYKEPVDQD--EIREAS 63
Query: 139 VRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRAN 198
+R E ++ +R +D+G G GG++R+L +KFG + ++PVQ +R
Sbjct: 64 LRTDEWLASELAMT-GVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNE 122
Query: 199 ALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGT 258
GLAD ++ + G L+ P D +D +WS ++ H PDK K E ARV P G
Sbjct: 123 EYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGV 182
Query: 259 IIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAED 318
+ I D ++ I D L S Y L + L ++
Sbjct: 183 MAITDPMKEDGIDKSS---------IQPILDRIKLHDMGSLGLYRSLAKECGLVTLRTFS 233
Query: 319 WSQNVAPFWPAVIHSALT-WKGFTSLLRTEIFT 350
++ + V + S E
Sbjct: 234 RPDSLVHHYSKVKAELIKRSSEIASFCSPEFQA 266
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* Length = 312 | Back alignment and structure |
|---|
Score = 241 bits (616), Expect = 7e-78
Identities = 70/312 (22%), Positives = 115/312 (36%), Gaps = 44/312 (14%)
Query: 71 SRKLITRASSTTSTTTMSDAAARELKEGIAEFYDESSSLWEDIWGD-----HMHHGFYEP 125
+T ++T + T A A +E IA +++ + GD H H+G
Sbjct: 17 RGSHMTTETTTATATAKIPAPATPYQEDIARYWNNEARPVNLRLGDVDGLYHHHYGIGPV 76
Query: 126 DSSV---------------SVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIG 170
D + + +AQ + + L AG P +VD GCG G
Sbjct: 77 DRAALGDPEHSEYEKKVIAELHRLESAQAEFLMDHLGQAG----PDDT---LVDAGCGRG 129
Query: 171 GSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLV 230
GS ++FG++ +G+TLS QA N A + D V +V + L PF G
Sbjct: 130 GSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTAS 189
Query: 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDA 290
W+ ES ++ D SE +R G + +T C W ++ +A
Sbjct: 190 WNNESTMYV-DLHDLFSEHSRFLKVGGRYVTITGCWNPRYGQP---SKWVSQI-----NA 240
Query: 291 YYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPAVIHSALT---WKGFTSLLRTE 347
++ S +Y++ + L D + + P+W S+L K F R
Sbjct: 241 HFECNIHSRREYLRAMADNRLVPHTIVDLTPDTLPYWELRATSSLVTGIEKAFIESYRDG 300
Query: 348 IF-----TGRKV 354
F +V
Sbjct: 301 SFQYVLIAADRV 312
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 210 bits (535), Expect = 3e-66
Identities = 47/256 (18%), Positives = 104/256 (40%), Gaps = 34/256 (13%)
Query: 85 TTMSDAAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEE 144
T + + + + ++ DE ++E I+G++ + + ++
Sbjct: 2 TLIENLNSDKTFLENNQYTDEGVKVYEFIFGENYIS---------------SGGLEATKK 46
Query: 145 TLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR 204
L ++E+ V+D+G G+GG Y+ +K+GA GI + AN
Sbjct: 47 ILSDIELNEN-----SKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERV--- 98
Query: 205 GLADKVSFQVGDALQQPFPDGQFDLVWSMES--GEHMPDKSKFVSELARVTAPAGTIIIV 262
+K+ F+ D L + FP+ FDL++S ++ + +K+K + + P GT++I
Sbjct: 99 SGNNKIIFEANDILTKEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLIT 158
Query: 263 TWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQN 322
+C + + W+ E + + Y + +Y +L + + +++ ++D S
Sbjct: 159 DYCATE-------KENWDDEFKEYVKQRKY--TLITVEEYADILTACNFKNVVSKDLSDY 209
Query: 323 VAPFWPAVIHSALTWK 338
K
Sbjct: 210 WNQLLEVEHKYLHENK 225
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 164 bits (417), Expect = 9e-49
Identities = 42/292 (14%), Positives = 83/292 (28%), Gaps = 58/292 (19%)
Query: 94 ELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSE 153
+ I +F I + P S ++ +
Sbjct: 3 NENKTIHDFE------LNLICDFFSNMERQGPGS-------PEVTLKALSFI-------- 41
Query: 154 DPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQ 213
D + D+GCG GG + LA + G+ N A GL ++V+
Sbjct: 42 DNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGI 101
Query: 214 VGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSE 273
VG PF + + DL+WS + ++ + + ++E + G + +
Sbjct: 102 VGSMDDLPFRNEELDLIWSEGAIYNIGFE-RGLNEWRKYLKKGGYLAVSECSWFTDERPA 160
Query: 274 ESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNV--APFWPAVI 331
E W P + + V + + +N ++ +
Sbjct: 161 EINDFWMDA----------YPEIDTIPNQVAKIHKAGYLPVATFILPENCWTDHYFTPKV 210
Query: 332 HSALTW----------KGFTSLLRTEI--------------FTGRKVLLCNH 359
+ + + F+ L E F +K+ L H
Sbjct: 211 AAQKIFLTKYAGNKIAEEFSMLQSIEEELYHKYKEYYGYTFFIAKKIRLLEH 262
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 159 bits (403), Expect = 8e-47
Identities = 38/203 (18%), Positives = 64/203 (31%), Gaps = 18/203 (8%)
Query: 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAA 202
E T + + T K + D+GCG GG + +LA + GI L P + N A
Sbjct: 32 EATRKAVSFINELTDDAK-IADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAV 90
Query: 203 ARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262
AD+V G PF + + DL+WS + ++ + + ++E ++ G I +
Sbjct: 91 KANCADRVKGITGSMDNLPFQNEELDLIWSEGAIYNIGFE-RGMNEWSKYLKKGGFIAVS 149
Query: 263 TWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQN 322
E W P + ++ +N
Sbjct: 150 EASWFTSERPAEIEDFWMDA----------YPEISVIPTCIDKMERAGYTPTAHFILPEN 199
Query: 323 ------VAPFWPAVIHSALTWKG 339
AP G
Sbjct: 200 CWTEHYFAPQDEVRETFMKEHAG 222
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 143 bits (361), Expect = 3e-41
Identities = 36/175 (20%), Positives = 65/175 (37%), Gaps = 10/175 (5%)
Query: 154 DPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQ 213
+ + K V+D G G + + G K GI +S +Q ++A + K++
Sbjct: 19 NESNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNF--KLNIS 76
Query: 214 VGDALQQPFPDGQFDLVWSMESGEHM--PDKSKFVSELARVTAPAGTIIIVTWCHRDLAP 271
GD + PF D V+S + HM D + + E+ RV P G I +D
Sbjct: 77 KGDIRKLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKD--E 134
Query: 272 SEESLQPWEQELLKKICDAYYLP-AWCSTADYVKLLQS---LSLEDIKAEDWSQN 322
+ + ++ + ++ S + K + L ED E +
Sbjct: 135 RYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVLFKEDRVVERINDG 189
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 142 bits (360), Expect = 6e-41
Identities = 38/237 (16%), Positives = 72/237 (30%), Gaps = 34/237 (14%)
Query: 95 LKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSED 154
+ E +F + + ++I + + E + G+
Sbjct: 2 MSENKKKFDKKGAKNMDEISKTLFAPIY----------------PIIAENIINRFGI--- 42
Query: 155 PTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQV 214
+D+G G G S LAK+ + + S + A A L D++
Sbjct: 43 ---TAGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQ 99
Query: 215 GDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEE 274
GD P D DL+ S S D + E+ R+ G I ++E
Sbjct: 100 GDVHNIPIEDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIG-----GGFGNKE 154
Query: 275 SLQPWEQELLKKICDAYYLPA----WCSTADYVKLLQSLSLEDIKAEDWSQNVAPFW 327
E+++K D + + +L + + + + FW
Sbjct: 155 LRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISSYEIILGDEG---FW 208
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 133 bits (335), Expect = 4e-37
Identities = 45/227 (19%), Positives = 84/227 (37%), Gaps = 33/227 (14%)
Query: 98 GIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTK 157
G E+Y + + ++ +++ +E L K
Sbjct: 2 GFKEYYRVFPTYTDINSQEYR------------------SRIETLEPLLMKYM------K 37
Query: 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA 217
+ V+D+ CG+GG S L +G + G+ +S ++A A +R V F VGDA
Sbjct: 38 KRGKVLDLACGVGGFSFLLED-YGFEVVGVDISEDMIRKAREYAKSRES--NVEFIVGDA 94
Query: 218 LQQPFPDGQFDLVWSMESGEHMP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEES 275
+ F D FD V ++S H + ++ E+ RV P+G I+ R+L P +
Sbjct: 95 RKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRLKE 154
Query: 276 LQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQN 322
Q+ + +P ++ ++ W +
Sbjct: 155 SLVVGQK----YWISKVIPDQEERTVVIEFKSEQDSFRVRFNVWGKT 197
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 132 bits (333), Expect = 1e-36
Identities = 49/269 (18%), Positives = 97/269 (36%), Gaps = 44/269 (16%)
Query: 86 TMSDAAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEET 145
M+ E + +D S+ W + ++ S R+ + E+
Sbjct: 6 CMTK---FNWHESAEKKWDSSAEFW-----NQNSQEMWD-------SGSRSTIIPFFEQY 50
Query: 146 LRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARG 205
+ K+ V+DVGCG G + L++ G K G+ +S V Q+ RG
Sbjct: 51 V----------KKEAEVLDVGCGDGYGTYKLSRT-GYKAVGVDISEVMIQKGKE----RG 95
Query: 206 LADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265
+SF GD PF + QF+ + ++ S E + + ++E+ RV G I
Sbjct: 96 EGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAILG 155
Query: 266 HRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAED-----WS 320
P+ + + L K + W ++ +L++ + + +
Sbjct: 156 -----PTAKPRENSYPRLYGKDVVCNTMMPW----EFEQLVKEQGFKVVDGIGVYKRGVN 206
Query: 321 QNVAPFWPAVIHSALTWKGFTSLLRTEIF 349
+ + + +LT+ L R +
Sbjct: 207 EKMLGQLSTDLQQSLTFLWVFMLKRHKEM 235
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 1e-34
Identities = 49/210 (23%), Positives = 77/210 (36%), Gaps = 11/210 (5%)
Query: 120 HGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKK 179
HG+ E ++ + Q +E+ L P + V++ GCGIG + LAK
Sbjct: 8 HGYSEREA-----LRLSEQAETLEKLL-HHDTVYPPGAK---VLEAGCGIGAQTVILAKN 58
Query: 180 F-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238
A+ I +SP ++A G+ + V F + PF D FD ++ EH
Sbjct: 59 NPDAEITSIDISPESLEKARENTEKNGIKN-VKFLQANIFSLPFEDSSFDHIFVCFVLEH 117
Query: 239 MPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCS 298
+ + + L +V P GTI ++ H E + E AY
Sbjct: 118 LQSPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLV 177
Query: 299 TADYVKLLQSLSLEDIKAEDWSQNVAPFWP 328
LLQ E I+ E + P
Sbjct: 178 GRQIYPLLQESGFEKIRVEPRMVYIDSSKP 207
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 3e-33
Identities = 38/209 (18%), Positives = 69/209 (33%), Gaps = 23/209 (11%)
Query: 127 SSVSVSDHR---AAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAK 183
++S S+HR R + ++D+G G G A+ G
Sbjct: 7 FTISESEHRIHNPFTEEKYATLGRVLRMKPGTR-----ILDLGSGSGEMLCTWARDHGIT 61
Query: 184 CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKS 243
GI +S + +A A G++++V F DA + + D+ + + +
Sbjct: 62 GTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV-ANEKCDVAACVGATWIAGGFA 120
Query: 244 KFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYV 303
LA+ P G ++I R L +EE Q + + V
Sbjct: 121 GAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACG------VSSTSDFL---TLPGLV 171
Query: 304 KLLQSLSLEDIKA-----EDWSQNVAPFW 327
L + ++ E W + A W
Sbjct: 172 GAFDDLGYDVVEMVLADQEGWDRYEAAKW 200
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 3e-27
Identities = 29/157 (18%), Positives = 54/157 (34%), Gaps = 9/157 (5%)
Query: 119 HHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAK 178
F+ S + S +VD+GCG G R+ +
Sbjct: 9 QPDFFAGYSQLGRSIEGLDGAAEWPALRAMLPE-----VGGLRIVDLGCGFGWFCRWAHE 63
Query: 179 KFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238
+ G+ LS RA A G ++++ D + P FDL +S + +
Sbjct: 64 HGASYVLGLDLSEKMLARARAAGPDTG----ITYERADLDKLHLPQDSFDLAYSSLALHY 119
Query: 239 MPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEES 275
+ D ++ + + +P G + T +AP+
Sbjct: 120 VEDVARLFRTVHQALSPGGHFVFSTEHPIYMAPARPG 156
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 5e-27
Identities = 46/233 (19%), Positives = 73/233 (31%), Gaps = 31/233 (13%)
Query: 114 WGDHMHHGFYEPDSSVSVSDHRAAQV-RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGS 172
+ FYE +V + R R ++ LR P V V CG
Sbjct: 83 ALAPLERVFYERLPAVLATRERHGHFRRALQRHLR-------PGCV---VASVPCGWMSE 132
Query: 173 SRYLAKKFGAKCQ--GITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLV 230
L Q GI P A LAA LA +++ DA + + +DL+
Sbjct: 133 LLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTRE-GYDLL 191
Query: 231 WSMESGEHMPDKSKFVS---ELARVTAPAGTIIIVTWCHRDLAPSEESLQPWE------- 280
S + PD ++ + P G ++ P+ PW+
Sbjct: 192 TSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTP---PPALSPDSPWDMQAIDPH 248
Query: 281 ----QELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPA 329
Q+L+ A + A L+ D++ ED + P A
Sbjct: 249 DLQLQQLVFTRLIQPRWNALRTHAQTRAQLEEAGFTDLRFEDDRARLFPTVIA 301
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 5e-26
Identities = 36/222 (16%), Positives = 76/222 (34%), Gaps = 17/222 (7%)
Query: 76 TRASSTTSTTTMSDAAARELKEGIAEFYDESSSLWEDIWG--DHMHHGFYEPDSSVSVSD 133
+ S+ + + E+ E +FY ++ + W+ I D M G+ +S
Sbjct: 4 SHHHHHHSSGLVPRGSTSEVIEDEKQFYSKAKTYWKQIPPTVDGMLGGY------GHISS 57
Query: 134 HRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQ 193
R + G ++ T +D G GIG ++ L + + ++
Sbjct: 58 IDINSSRKFLQRFLREGPNKTGTSC---ALDCGAGIGRITKRLLLPLFREVDMVDITEDF 114
Query: 194 AQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDK--SKFVSELAR 251
+A G ++ +D++W H+ D+ ++F+
Sbjct: 115 LVQAKTYLGEEGK-RVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKG 173
Query: 252 VTAPAGTIIIVTWCHRD---LAPSEESLQPWEQELLKKICDA 290
P G I+I ++ L + S+ + + IC A
Sbjct: 174 SLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSA 215
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 103 bits (257), Expect = 8e-26
Identities = 33/208 (15%), Positives = 62/208 (29%), Gaps = 25/208 (12%)
Query: 91 AARELKEGIAEFYDESSSLWEDIWG--DHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRF 148
+L + +Y ++ W + + G V D IE + F
Sbjct: 38 LTGDLYDPEKGWYGKALEYWRTVPATVSGVLGGM----DHVHDVD--------IEGSRNF 85
Query: 149 AGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLAD 208
++ P +D G GIG ++ L K A + + A A +
Sbjct: 86 --IASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPV-- 141
Query: 209 KVSFQVGDALQQPFPDGQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVTWCH 266
F + P +DL+ + ++ D KF + P G I C
Sbjct: 142 -GKFILASMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCS 200
Query: 267 RD----LAPSEESLQPWEQELLKKICDA 290
+ + SL + + ++
Sbjct: 201 TGDRFLVDKEDSSLTRSDIHYKRLFNES 228
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 1e-25
Identities = 42/190 (22%), Positives = 78/190 (41%), Gaps = 17/190 (8%)
Query: 130 SVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITL 189
+ H + MI+ A + V+D+G G G ++ + +C G+
Sbjct: 2 AHHHHHHSLGLMIK----TAEC-----RAEHRVLDIGAGAGHTALAFSPY-VQECIGVDA 51
Query: 190 SPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSEL 249
+ + A++ A +G+ + V FQ G A PFPD FD++ + H D K V E+
Sbjct: 52 TKEMVEVASSFAQEKGV-ENVRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREV 110
Query: 250 ARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSL 309
ARV G ++V AP + L + L + ++ + S +++ + +
Sbjct: 111 ARVLKQDGRFLLVDHY----APEDPVLDEFVNHLNRLRDPSHVRES--SLSEWQAMFSAN 164
Query: 310 SLEDIKAEDW 319
L + W
Sbjct: 165 QLAYQDIQKW 174
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 103 bits (257), Expect = 1e-25
Identities = 33/188 (17%), Positives = 63/188 (33%), Gaps = 22/188 (11%)
Query: 132 SDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSP 191
S R +R++ + + + + D+G G GG S LA + G + S
Sbjct: 13 SQTRVPDIRIVNAIINLLNLPKGSV-----IADIGAGTGGYSVALANQ-GLFVYAVEPSI 66
Query: 192 VQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELAR 251
V A V + G A PD D V S+ + H K E+ R
Sbjct: 67 VM------RQQAVVHPQ-VEWFTGYAENLALPDKSVDGVISILAIHHFSHLEKSFQEMQR 119
Query: 252 VTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSL 311
+ +++ + R + W + + + + + + LLQ +
Sbjct: 120 IIRDGTIVLLT-FDIRLAQ------RIWLYDYFPFLWE--DALRFLPLDEQINLLQENTK 170
Query: 312 EDIKAEDW 319
++A +
Sbjct: 171 RRVEAIPF 178
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263 | Back alignment and structure |
|---|
Score = 101 bits (252), Expect = 7e-25
Identities = 35/194 (18%), Positives = 62/194 (31%), Gaps = 6/194 (3%)
Query: 134 HRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQ 193
RA + + + P +++G G G + L + G + +
Sbjct: 15 LRAHPPEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIAR-GYRYIALDADA-- 71
Query: 194 AQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVT 253
A G+ KV DA P PD V + +PD K ++E RV
Sbjct: 72 AMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLWHLVPDWPKVLAEAIRVL 131
Query: 254 APAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLED 313
P G ++ W + +P + W ++ + + L+ L L+
Sbjct: 132 KPGGALLEG-WDQAEASPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRLGLKP 190
Query: 314 IKAE--DWSQNVAP 325
E W + P
Sbjct: 191 RTREVARWREERTP 204
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 96.9 bits (241), Expect = 4e-23
Identities = 30/171 (17%), Positives = 51/171 (29%), Gaps = 13/171 (7%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQ--GITLSPVQAQRANALAAARGLADKVSFQV 214
+P ++VD GCG G L + GI A L F
Sbjct: 21 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLE 78
Query: 215 GDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIV--TWCHRDLAPS 272
GDA + D ++D+ HM + ++ G II W +
Sbjct: 79 GDATEIELND-KYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNMASYL 137
Query: 273 EESLQPWEQELLKKICDAYYLPAWCSTADY------VKLLQSLSLEDIKAE 317
+ + E L + + + D L L +++I+
Sbjct: 138 LDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIPIYLSELGVKNIECR 188
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 94.5 bits (235), Expect = 4e-23
Identities = 29/169 (17%), Positives = 57/169 (33%), Gaps = 17/169 (10%)
Query: 108 SLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGC 167
+ W+++ ++ P S + + + A + + R ++D GC
Sbjct: 3 TTWKELTDNN-------PAHSENYAQRWRNLAAAGNDIYGEARLIDAMAPRGAKILDAGC 55
Query: 168 GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQF 227
G G YL+K+ G G L P + A+ + + VGD + F
Sbjct: 56 GQGRIGGYLSKQ-GHDVLGTDLDP------ILIDYAKQDFPEARWVVGDLSVDQISETDF 108
Query: 228 DLVWSMESGEHM---PDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSE 273
DL+ S + + ++ + R G +I R +
Sbjct: 109 DLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAGRGWVFGD 157
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298 | Back alignment and structure |
|---|
Score = 96.4 bits (239), Expect = 6e-23
Identities = 27/179 (15%), Positives = 56/179 (31%), Gaps = 13/179 (7%)
Query: 87 MSDAAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETL 146
+ DA I +FY E + P ++ + +++
Sbjct: 57 LDDAEMNHALSLIRKFYVNLGMKLEMEKAQEVIES-DSPWETLRSFYFYPRYLELLKNEA 115
Query: 147 RFAGVSEDPTKRPKNVVDVGCGIGG-SSRYLAKKFGAKCQGITLSPVQAQRANALAAARG 205
+R + V +G G + L+ +G + + + P A+ + + G
Sbjct: 116 ALGRF-----RRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLG 170
Query: 206 LADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264
+ D V+ GD +FD++ K + + R II T+
Sbjct: 171 V-DGVNVITGDET--VIDGLEFDVLM---VAALAEPKRRVFRNIHRYVDTETRIIYRTY 223
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235 | Back alignment and structure |
|---|
Score = 94.5 bits (235), Expect = 1e-22
Identities = 37/161 (22%), Positives = 60/161 (37%), Gaps = 19/161 (11%)
Query: 118 MHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLA 177
M ++E S ++ + + ED ++D+GCG G S LA
Sbjct: 1 MPESYWEKVSGKNIPSSL------DLYPIIHNYLQED-----DEILDIGCGSGKISLELA 49
Query: 178 KKFGAKCQGITLSPVQAQRANALAAARGL----ADKVSFQVGDALQQPFPDGQFDLVWSM 233
K G GI ++ + A A + GL K F+V +A F D FD
Sbjct: 50 SK-GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQ 108
Query: 234 ESGEHMPD---KSKFVSELARVTAPAGTIIIVTWCHRDLAP 271
+PD +S+ + E+ RV P + +V +
Sbjct: 109 AFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLK 149
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 93.7 bits (233), Expect = 2e-22
Identities = 41/246 (16%), Positives = 84/246 (34%), Gaps = 28/246 (11%)
Query: 89 DAAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRF 148
+ R ++ + + + +++ W D + A + I
Sbjct: 3 EPIMRNPEDALLDSWHQNAQAWIDAVRHGAIESRRQVT--------DQAILLAILG---- 50
Query: 149 AGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLAD 208
++P+ V+D+GCG G R LA + G + G+ A A A
Sbjct: 51 --------RQPERVLDLGCGEGWLLRALADR-GIEAVGVDGDRTLVDAARAAGAGEVH-- 99
Query: 209 KVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRD 268
S+ + +DL+ + + H D + +S + + P G ++I T
Sbjct: 100 LASYAQLAEA-KVPVGKDYDLICANFALLH-QDIIELLSAMRTLLVPGGALVIQTLHPWS 157
Query: 269 LAPSEESLQPWEQELLKKICDAYYLPAWCST-ADYVKLLQS--LSLEDIKAEDWSQNVAP 325
+A + E+ D +P + T A ++ L L L ++ Q+ P
Sbjct: 158 VADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGLRLVSLQEPQHPQSAVP 217
Query: 326 FWPAVI 331
++
Sbjct: 218 QSLLMV 223
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 90.5 bits (225), Expect = 6e-22
Identities = 30/126 (23%), Positives = 48/126 (38%), Gaps = 15/126 (11%)
Query: 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAA 202
EE L + +VD GCG G +YL + K I ++ AL
Sbjct: 7 EEYLPNIFEGKK-----GVIVDYGCGNGFYCKYLLEF-ATKLYCIDINV------IALKE 54
Query: 203 ARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262
+ +K + + + PD D + S M DK +SE+ R+ G +II+
Sbjct: 55 VK---EKFDSVITLSDPKEIPDNSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIII 111
Query: 263 TWCHRD 268
W +
Sbjct: 112 DWRKEN 117
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 92.3 bits (229), Expect = 8e-22
Identities = 22/120 (18%), Positives = 40/120 (33%), Gaps = 4/120 (3%)
Query: 155 PTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQV 214
P K V+D+GCG G Y A+ K GI LS A + + V ++
Sbjct: 41 PDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEA----KRKTTSPVVCYEQ 96
Query: 215 GDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEE 274
+++V S + ++ ++ +G+ I A +
Sbjct: 97 KAIEDIAIEPDAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQ 156
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279 | Back alignment and structure |
|---|
Score = 91.4 bits (227), Expect = 3e-21
Identities = 32/185 (17%), Positives = 65/185 (35%), Gaps = 13/185 (7%)
Query: 133 DHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPV 192
D + + E+ L+ + + ++D+GCG G + +A+ GA+ G +
Sbjct: 37 DKHSFVWQYGEDLLQLLNP-----QPGEFILDLGCGTGQLTEKIAQS-GAEVLGTDNAA- 89
Query: 193 QAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARV 252
+ AR + F V DA D D V+S + + ++ + +
Sbjct: 90 -----TMIEKARQNYPHLHFDVADARNFRV-DKPLDAVFSNAMLHWVKEPEAAIASIHQA 143
Query: 253 TAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLE 312
G + ++ E+L + L A + S +YV +L+ +
Sbjct: 144 LKSGGRFVAEFGGKGNIKYILEALYNALETLGIHNPQALNPWYFPSIGEYVNILEKQGFD 203
Query: 313 DIKAE 317
A
Sbjct: 204 VTYAA 208
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 | Back alignment and structure |
|---|
Score = 89.2 bits (221), Expect = 5e-21
Identities = 44/236 (18%), Positives = 77/236 (32%), Gaps = 38/236 (16%)
Query: 87 MSDAAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETL 146
M+ + L E +Y +S ++ + +M S AA R+
Sbjct: 1 MTTSHG--LIESQLSYYRARASEYDATFVPYMD------------SAAPAALERLRAG-- 44
Query: 147 RFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGL 206
+V+++ G G +R+L+ + + S A A GL
Sbjct: 45 ----------NIRGDVLELASGTGYWTRHLSGL-ADRVTALDGSAEMI----AEAGRHGL 89
Query: 207 ADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKS--KFVSELARVTAPAGTIIIVTW 264
D V F+ D PD Q+D V+ H+PD F + AP G + V
Sbjct: 90 -DNVEFRQQDLFDWT-PDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDV 147
Query: 265 CHRDLAPSEESLQPWEQELLKKICDAYYLPAWC---STADYVKLLQSLSLEDIKAE 317
+ ++ E + + + D S A+ + L +L E
Sbjct: 148 TDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTALGWSCSVDE 203
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230 | Back alignment and structure |
|---|
Score = 89.0 bits (221), Expect = 9e-21
Identities = 25/107 (23%), Positives = 41/107 (38%), Gaps = 7/107 (6%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216
K K V+D+GC G + + G + GI P A A+ D V +
Sbjct: 31 KEWKEVLDIGCSSGALGAAIKEN-GTRVSGIEAFP------EAAEQAKEKLDHVVLGDIE 83
Query: 217 ALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263
+ P+ + QFD V + EH+ D + ++ G I+
Sbjct: 84 TMDMPYEEEQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASI 130
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211 | Back alignment and structure |
|---|
Score = 88.3 bits (219), Expect = 1e-20
Identities = 37/210 (17%), Positives = 66/210 (31%), Gaps = 44/210 (20%)
Query: 97 EGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPT 156
+AE Y+ W + A + R ++ L
Sbjct: 4 ASLAEAYE--------AWYGTPLGAY-----------VIAEEERALKGLLP--------- 35
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216
+++++VG G G R L + G+ S LA R A + ++
Sbjct: 36 -PGESLLEVGAGTGYWLRRLP---YPQKVGVEPSE------AMLAVGRRRAPEATWVRAW 85
Query: 217 ALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESL 276
PFP FD+V + E + D + + E RV P G +++
Sbjct: 86 GEALPFPGESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLEALSP------W 139
Query: 277 QPWEQELLKKICDAYYLPAWCSTADYVKLL 306
+ L +K + + + D LL
Sbjct: 140 AALYRRLGEKGVLPWAQARFLAREDLKALL 169
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383 | Back alignment and structure |
|---|
Score = 91.3 bits (226), Expect = 1e-20
Identities = 40/260 (15%), Positives = 76/260 (29%), Gaps = 32/260 (12%)
Query: 78 ASSTTSTTTMSDAAARELKEGIAEFYDE----SSSLWEDIWGDHMHHGFYEPDSSVSVSD 133
+ ++ + + + +++ +A++Y + S+ L ++D
Sbjct: 4 SCASGCQKSKNGGSTPSIRDHVADYYGKTLQSSADLKTSACKLAAAVPESHRKILADIAD 63
Query: 134 HRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQ--GITLSP 191
+ TL G E T V+D+GCG G +K G + G+ +
Sbjct: 64 EVLEKFYGCGSTLPADGSLEGAT-----VLDLGCGTGRDVYLASKLVGEHGKVIGVDMLD 118
Query: 192 VQAQRANALAA-------ARGLADKVSFQVGD------ALQQPFPDGQFDLVWSMESGEH 238
Q + A V F G A + PD D+V S
Sbjct: 119 NQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGVPDSSVDIVISNCVCNL 178
Query: 239 MPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCS 298
+K E+ RV G + + +L L
Sbjct: 179 STNKLALFKEIHRVLRDGGELYFSDVYADRRLSEA----AQQDPIL----YGECLGGALY 230
Query: 299 TADYVKLLQSLSLEDIKAED 318
D+ +L+ D++
Sbjct: 231 LEDFRRLVAEAGFRDVRLVS 250
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 89.1 bits (221), Expect = 2e-20
Identities = 48/204 (23%), Positives = 82/204 (40%), Gaps = 20/204 (9%)
Query: 117 HMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYL 176
H HH Y V+ A+ + + ++ A + K + V+DV G G +
Sbjct: 8 HHHHHMY-------VTSQIHAKGSDLAKLMQIAAL-----KGNEEVLDVATGGGHVANAF 55
Query: 177 AKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236
A K L+ + A A G V + GDA Q PF D +F +V +
Sbjct: 56 APF-VKKVVAFDLTEDILKVARAFIEGNGHQQ-VEYVQGDAEQMPFTDERFHIVTCRIAA 113
Query: 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAW 296
H P+ + FVSE RV G +++V P ++ + + K+ D + AW
Sbjct: 114 HHFPNPASFVSEAYRVLKKGGQLLLVDNSA----PENDAFDVFYNYVEKER-DYSHHRAW 168
Query: 297 CSTADYVKLLQSLSLEDIKAEDWS 320
+D++K+L+ E + +
Sbjct: 169 -KKSDWLKMLEEAGFELEELHCFH 191
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199 | Back alignment and structure |
|---|
Score = 86.8 bits (215), Expect = 2e-20
Identities = 28/119 (23%), Positives = 45/119 (37%), Gaps = 5/119 (4%)
Query: 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA 217
+P +D+GCG G +S YLA G + + + + L D + +V D
Sbjct: 32 KPGKTLDLGCGNGRNSLYLAAN-GYDVDAWDKNAMSIANVERIKSIENL-DNLHTRVVDL 89
Query: 218 LQQPFPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEE 274
F D Q+D + S + K ++ + R T P G +IV P
Sbjct: 90 NNLTF-DRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTV 147
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 86.8 bits (215), Expect = 4e-20
Identities = 38/229 (16%), Positives = 66/229 (28%), Gaps = 45/229 (19%)
Query: 87 MSDAAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETL 146
M + ++ + + + W HR A + ++
Sbjct: 1 MGSDKIHHHHHHMWHIFERFVNEY-ERWFLV----------------HRFAYLSELQAVK 43
Query: 147 RFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGL 206
V++G G G + L K G + S AR
Sbjct: 44 CL--------LPEGRGVEIGVGTGRFAVPLKIKIG-----VEPSE------RMAEIAR-- 82
Query: 207 ADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCH 266
V G A P D FD + + + D + + E R+ G +I+
Sbjct: 83 KRGVFVLKGTAENLPLKDESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGI--- 139
Query: 267 RDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIK 315
ES E E K+ Y + ST + + L++ E+ K
Sbjct: 140 ----VDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFK 184
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 86.1 bits (213), Expect = 8e-20
Identities = 34/215 (15%), Positives = 70/215 (32%), Gaps = 30/215 (13%)
Query: 96 KEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDP 155
+DE + + DS V D + +V E + + +
Sbjct: 2 GTEFNGLFDEWAHTY---------------DSFVQGEDIQYKEVFAHYEDI----LEDVV 42
Query: 156 TKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARG-LADKVSFQV 214
K NV++ G G G + L G GI S A+ L + S
Sbjct: 43 NKSFGNVLEFGVGTGNLTNKLLLA-GRTVYGIEPSR------EMRMIAKEKLPKEFSITE 95
Query: 215 GDALQQPFPDGQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPS 272
GD L D + S + H+ D K+ +++ +++ G I+ D
Sbjct: 96 GDFLSFEV-PTSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAY 154
Query: 273 EESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQ 307
+++++ +Q ++ + + + +
Sbjct: 155 DKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFE 189
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 85.7 bits (212), Expect = 2e-19
Identities = 40/171 (23%), Positives = 61/171 (35%), Gaps = 31/171 (18%)
Query: 92 ARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGV 151
+K EFYD + + D + Y HR + E
Sbjct: 10 HHHMKLRSWEFYDRIARAY-DSMYETPKWKLY----------HRLIGSFLEEYL------ 52
Query: 152 SEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVS 211
K P V+D+G G G S +L ++ G + + S L AR +
Sbjct: 53 -----KNPCRVLDLGGGTGKWSLFLQER-GFEVVLVDPSK------EMLEVAREKG-VKN 99
Query: 212 FQVGDALQQPFPDGQFDLVWSMESG-EHMPDKSKFVSELARVTAPAGTIII 261
A PFP G F+ V ++ ++ +K K SE+ RV P G +I
Sbjct: 100 VVEAKAEDLPFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIA 150
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259 | Back alignment and structure |
|---|
Score = 84.5 bits (209), Expect = 6e-19
Identities = 30/161 (18%), Positives = 51/161 (31%), Gaps = 10/161 (6%)
Query: 155 PTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQ 213
P +R N D+GCG G S+ L ++ GI + L A +F
Sbjct: 30 PLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDD------DMLEKAADRLPNTNFG 83
Query: 214 VGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSE 273
D P + DL+++ + +PD +S+L G + + +
Sbjct: 84 KADL-ATWKPAQKADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPDNLQEPTHI 142
Query: 274 ESLQPWEQELLKKICDAYYLPAWC--STADYVKLLQSLSLE 312
+ + K L +DY L S
Sbjct: 143 AMHETADGGPWKDAFSGGGLRRKPLPPPSDYFNALSPKSSR 183
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 82.9 bits (205), Expect = 7e-19
Identities = 26/185 (14%), Positives = 55/185 (29%), Gaps = 32/185 (17%)
Query: 97 EGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPT 156
+ +++ Y + E + G + + R T
Sbjct: 3 DDVSKAYSSPTFDAEALLGTVISAEDPD----------RVLIEPW-------------AT 39
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216
++DVG G G + +LA G + +G+ + + AR V+F G
Sbjct: 40 GVDGVILDVGSGTGRWTGHLASL-GHQIEGLEPAT------RLVELARQTHPSVTFHHGT 92
Query: 217 ALQQPFPDGQFDLVWSMESGEHMP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEE 274
++ + + S HM + + L G +++ + L P
Sbjct: 93 ITDLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYH 152
Query: 275 SLQPW 279
+
Sbjct: 153 PVATA 157
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275 | Back alignment and structure |
|---|
Score = 83.9 bits (207), Expect = 1e-18
Identities = 32/172 (18%), Positives = 55/172 (31%), Gaps = 21/172 (12%)
Query: 112 DIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGG 171
D D M G ++ ++ + A I V K + ++++GCG G
Sbjct: 7 DYITDLMALGPTA--NARTIQRRQTAHRLAI---AEAWQV-----KPGEKILEIGCGQGD 56
Query: 172 SSRYLAKKFGAKCQ--GITLSPVQAQRANALAAAR------GLADKVSFQVGDAL---QQ 220
S LA + G+ GI ++ L A L D+++ L
Sbjct: 57 LSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLG 116
Query: 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPS 272
P D FD V S + + + A + + W + A
Sbjct: 117 PIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWSMQPTALD 168
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216 | Back alignment and structure |
|---|
Score = 81.0 bits (200), Expect = 5e-18
Identities = 22/122 (18%), Positives = 43/122 (35%), Gaps = 14/122 (11%)
Query: 155 PTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR---GLADKVS 211
+ N +++GC G + LA + I + P A+ A +S
Sbjct: 48 SSGAVSNGLEIGCAAGAFTEKLAPH-CKRLTVIDVMP------RAIGRACQRTKRWSHIS 100
Query: 212 FQVGDALQQPFPDGQFDLVWSMESGEHMPDKS---KFVSELARVTAPAGTIIIVTWCHRD 268
+ D LQ FDL+ E ++ D + + + ++ AP G ++ +
Sbjct: 101 WAATDILQFS-TAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSARDAT 159
Query: 269 LA 270
Sbjct: 160 CR 161
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299 | Back alignment and structure |
|---|
Score = 81.2 bits (200), Expect = 2e-17
Identities = 41/214 (19%), Positives = 73/214 (34%), Gaps = 25/214 (11%)
Query: 156 TKRPKNVVDVGCGIGGSSRYLAKKFGAKCQ--GITLSPVQAQRANALAAARGLADK-VSF 212
K +VDVGCG G ++ +A++ Q G LS + A + K VSF
Sbjct: 34 DGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSF 93
Query: 213 QVGDA------LQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCH 266
++ + + D++ ++E H D KF GTI I +
Sbjct: 94 KISSSDDFKFLGADSVDKQKIDMITAVECA-HWFDFEKFQRSAYANLRKDGTIAIWGYAD 152
Query: 267 -------------RDLAPSEESLQP-WEQELLKKICDAYYLPAWCSTADYVKLLQSLSLE 312
++ ++ L P WEQ ++ + + + E
Sbjct: 153 PIFPDYPEFDDLMIEVPYGKQGLGPYWEQPGRSRLRNMLKDSHLDPELFHDIQVSYFCAE 212
Query: 313 DIKAEDWSQNVAPFWPAVIHSALTWKGFTSLLRT 346
D++ + P +I +T F +RT
Sbjct: 213 DVRDKVKLHQHTK-KPLLIRKQVTLVEFADYVRT 245
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219 | Back alignment and structure |
|---|
Score = 78.2 bits (193), Expect = 5e-17
Identities = 44/178 (24%), Positives = 69/178 (38%), Gaps = 17/178 (9%)
Query: 118 MHHGFYEPDSSVSVSDHRAAQVRM--IEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRY 175
+ H F D S +++ + E+ L+ G+ E T V+DVG G G Y
Sbjct: 3 LAHKF---DPSKIKKLDDPSRLELFDPEKVLKEFGLKEGMT-----VLDVGTGAGFYLPY 54
Query: 176 LAKKFGA--KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSM 233
L+K G K I + A GL + V + + P PD D ++
Sbjct: 55 LSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKN-VEVLKSEENKIPLPDNTVDFIFMA 113
Query: 234 ESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRD---LAPSEESLQPWE-QELLKKI 287
+ + + KF+ EL RV P + I+ W + P EE WE +L+
Sbjct: 114 FTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDA 171
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269 | Back alignment and structure |
|---|
Score = 79.2 bits (195), Expect = 5e-17
Identities = 30/115 (26%), Positives = 45/115 (39%), Gaps = 14/115 (12%)
Query: 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216
+ V+D+GCG G + A G+ +S A+ AA +V+F V
Sbjct: 85 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSK------VAIKAAAKRYPQVTFCVAS 138
Query: 217 ALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAP 271
+ + PF D D + + + ELARV P G +I T R L
Sbjct: 139 SHRLPFSDTSMDAIIRIYAPCK-------AEELARVVKPGGWVITATPGPRHLME 186
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 76.8 bits (189), Expect = 9e-17
Identities = 20/132 (15%), Positives = 47/132 (35%), Gaps = 8/132 (6%)
Query: 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA 217
++ + G G ++ +LA G + + S V +A LA +G+ ++ +
Sbjct: 29 PQGKILCLAEGEGRNACFLASL-GYEVTAVDQSSVGLAKAKQLAQEKGVK--ITTVQSNL 85
Query: 218 LQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLA-----PS 272
++ + S+ + + ++ + P G I+ + L P
Sbjct: 86 ADFDIVADAWEGIVSIFCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPK 145
Query: 273 EESLQPWEQELL 284
+ L P + L
Sbjct: 146 DLDLLPKLETLQ 157
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286 | Back alignment and structure |
|---|
Score = 78.5 bits (193), Expect = 1e-16
Identities = 23/122 (18%), Positives = 36/122 (29%), Gaps = 6/122 (4%)
Query: 155 PTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQV 214
P V+D+GCG G +S YL+ G + N L +S +
Sbjct: 117 KIISPCKVLDLGCGQGRNSLYLSLL-GYDVTSWDHNENSIAFLNETKEKENL--NISTAL 173
Query: 215 GDALQQPFPDGQFDLVWSMESGEHM--PDKSKFVSELARVTAPAGTIIIVTWCHRDLAPS 272
D +D + S + + + T G +IV D P
Sbjct: 174 YDINAANIQ-ENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPC 232
Query: 273 EE 274
Sbjct: 233 PL 234
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 76.4 bits (188), Expect = 3e-16
Identities = 30/183 (16%), Positives = 63/183 (34%), Gaps = 15/183 (8%)
Query: 133 DHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSP 191
+ R + ++ + +++D+G G G S +L +K+ A + +S
Sbjct: 19 EQRRKFIPCFDDFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSE 78
Query: 192 VQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMP--DKSKFVSEL 249
+ A KV + D + F + ++D+V S S H+ DK +
Sbjct: 79 KMLEIAKNRFRG---NLKVKYIEADYSKYDF-EEKYDMVVSALSIHHLEDEDKKELYKRS 134
Query: 250 ARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSL 309
+ +G I H + + + L K I Y + + + +
Sbjct: 135 YSILKESGIFINADLVHGET--------AFIENLNKTIWRQYVENSGLTEEEIAAGYERS 186
Query: 310 SLE 312
L+
Sbjct: 187 KLD 189
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 74.3 bits (182), Expect = 1e-15
Identities = 25/125 (20%), Positives = 42/125 (33%), Gaps = 18/125 (14%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216
+ ++ +GCG S L + S V A A ++ ++ D
Sbjct: 41 RPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHVP---QLRWETMD 97
Query: 217 ALQQPFPDGQFDLVWS---------------MESGEHMPDKSKFVSELARVTAPAGTIII 261
+ FP FD+V S E + + +SE++RV P G I
Sbjct: 98 VRKLDFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFIS 157
Query: 262 VTWCH 266
+T
Sbjct: 158 MTSAA 162
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217 | Back alignment and structure |
|---|
Score = 73.8 bits (181), Expect = 2e-15
Identities = 23/117 (19%), Positives = 37/117 (31%), Gaps = 8/117 (6%)
Query: 155 PTKRPKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADK---- 209
+ V+D+GCG G + L K + G+ +S + A L
Sbjct: 26 KQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWER 85
Query: 210 VSFQVGDALQQPFPDGQFDLVWSMESGEHM--PDKSKFVSELARVTAPAGTIIIVTW 264
+ G Q +D +E EH+ F L P +I+ T
Sbjct: 86 LQLIQGALTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQP-KIVIVTTP 141
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292 | Back alignment and structure |
|---|
Score = 74.4 bits (182), Expect = 3e-15
Identities = 31/224 (13%), Positives = 69/224 (30%), Gaps = 33/224 (14%)
Query: 104 DESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVV 163
SL+ D F ++ S +++ L TK ++
Sbjct: 3 SSMRSLFSDH--GKYVESF---RRFLNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKIL 57
Query: 164 DVGCGIGGSSRYLAKKFGAKCQGITL-------SPVQAQRANALAAARGLADKVSF---- 212
+G G G + K A+ G+ + S Q + L A + V F
Sbjct: 58 SIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHK 117
Query: 213 ----QVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRD 268
+ + + ++D + ++ ++ D + + ++I+
Sbjct: 118 ETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGS- 176
Query: 269 LAPSEESLQPWEQELLKKICDAYYLPAWC---STADYVKLLQSL 309
W++ L KK + C ++ D ++L +L
Sbjct: 177 --------SGWDK-LWKKYGSRFPQDDLCQYITSDDLTQMLDNL 211
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} PDB: 1kpi_A* Length = 302 | Back alignment and structure |
|---|
Score = 74.2 bits (183), Expect = 4e-15
Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 7/87 (8%)
Query: 162 VVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD--ALQ 219
++D+GCG G + R+ ++ G+TLS Q A+ + ++
Sbjct: 76 LLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF- 134
Query: 220 QPFPDGQFDLVWSMESGEHMPDKSKFV 246
D D + S+ + EH D +
Sbjct: 135 ----DEPVDRIVSLGAFEHFADGAGDA 157
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245 | Back alignment and structure |
|---|
Score = 73.2 bits (179), Expect = 4e-15
Identities = 25/162 (15%), Positives = 55/162 (33%), Gaps = 23/162 (14%)
Query: 110 WEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGI 169
WE W + +S+ + D + + L + +P ++D CG
Sbjct: 19 WEQYWNKTL------VNSTPVLWDANVERA--VVVDLPRFELLFNPELP---LIDFACGN 67
Query: 170 GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ----QPFPDG 225
G +++L++ + G+ +S + A A +S+++ D L
Sbjct: 68 GTQTKFLSQF-FPRVIGLDVSKSALEIAAKENTAAN----ISYRLLDGLVPEQAAQIHSE 122
Query: 226 QFDLVWSMESGEH---MPDKSKFVSELARVTAPAGTIIIVTW 264
D M +G H + + L + G + ++
Sbjct: 123 IGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIEL 164
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226 | Back alignment and structure |
|---|
Score = 72.4 bits (177), Expect = 6e-15
Identities = 33/194 (17%), Positives = 54/194 (27%), Gaps = 28/194 (14%)
Query: 107 SSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVG 166
S D + + +S D + L P R V++ G
Sbjct: 7 SRESYDRLARELGGYRHPWARVLSGPDPELTFDLWLSRLLT-------PQTR---VLEAG 56
Query: 167 CGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-PFPDG 225
CG G + + A+ SP L AR A + + P G
Sbjct: 57 CGHGPDAARFGPQ-AARWAAYDFSP------ELLKLARANAPHADVYEWNGKGELPAGLG 109
Query: 226 Q-FDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQP--WEQE 282
F L+ S + + L + AP + V ++ E L W+
Sbjct: 110 APFGLIVSRR------GPTSVILRLPELAAPDAHFLYVGP-RLNVPEVPERLAAVGWDIV 162
Query: 283 LLKKICDAYYLPAW 296
+ + P W
Sbjct: 163 AEDHVSVLAHAPTW 176
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235 | Back alignment and structure |
|---|
Score = 71.6 bits (175), Expect = 1e-14
Identities = 20/109 (18%), Positives = 37/109 (33%), Gaps = 4/109 (3%)
Query: 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA 217
+ GCG G +A G+ +S +AN + A+ SF D
Sbjct: 66 PLGRALVPGCGGGHDVVAMASP-ERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDV 124
Query: 218 LQQPFPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIVTW 264
P FDL++ + + + + + P G +I + +
Sbjct: 125 F-TWRPTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMY 172
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263 | Back alignment and structure |
|---|
Score = 71.4 bits (175), Expect = 2e-14
Identities = 45/276 (16%), Positives = 85/276 (30%), Gaps = 35/276 (12%)
Query: 87 MSDAAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETL 146
M+ ++A + A++ E + L++ + + + +
Sbjct: 1 MAHSSATAGPQ--ADYSGEIAELYDLVHQG--------------KGKDYHREAADLAALV 44
Query: 147 RFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGL 206
R + +++DV CG G R+LA +G+ LS + LA AR
Sbjct: 45 RRHSP------KAASLLDVACGTGMHLRHLADS-FGTVEGLELSA------DMLAIARRR 91
Query: 207 ADKVSFQVGDALQQPFPDGQFDLVWSM-ESGEHMPDKS---KFVSELARVTAPAGTIII- 261
GD +F V M S H+ ++ + A P G +++
Sbjct: 92 NPDAVLHHGDMRDFSLG-RRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVE 150
Query: 262 VTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQ 321
W + P + E ++ +T V L + I + S
Sbjct: 151 PWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRGITHHEESH 210
Query: 322 NVAPFWPAVIHSALTWKGFTSLLRTEIFTGRKVLLC 357
+ F A T G + +GR +
Sbjct: 211 RITLFTREQYERAFTAAGLSVEFMPGGPSGRGLFTG 246
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* Length = 287 | Back alignment and structure |
|---|
Score = 71.4 bits (176), Expect = 3e-14
Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 7/79 (8%)
Query: 162 VVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD--ALQ 219
++DVGCG G + +K+ G+TLS QA L A +
Sbjct: 68 LLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF- 126
Query: 220 QPFPDGQFDLVWSMESGEH 238
D D + S+ + EH
Sbjct: 127 ----DEPVDRIVSIGAFEH 141
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240 | Back alignment and structure |
|---|
Score = 70.3 bits (172), Expect = 3e-14
Identities = 22/111 (19%), Positives = 41/111 (36%), Gaps = 14/111 (12%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216
K + V+D+GCG G K+ G + G+ ++ + K + D
Sbjct: 40 KGCRRVLDIGCGRGEFLELC-KEEGIESIGVDINEDMIKFCEG---------KFNVVKSD 89
Query: 217 ALQ--QPFPDGQFDLVWSMESGEHM--PDKSKFVSELARVTAPAGTIIIVT 263
A++ + PD D V EH+ + +S + I+I +
Sbjct: 90 AIEYLKSLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIES 140
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* Length = 318 | Back alignment and structure |
|---|
Score = 71.1 bits (175), Expect = 5e-14
Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
Query: 162 VVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD--ALQ 219
++D+GCG G + R ++F G+TLS Q R + A+ +
Sbjct: 94 LLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF- 152
Query: 220 QPFPDGQFDLVWSMESGEH 238
D + S+E+ EH
Sbjct: 153 ----AEPVDRIVSIEAFEH 167
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 68.4 bits (167), Expect = 1e-13
Identities = 21/133 (15%), Positives = 39/133 (29%), Gaps = 15/133 (11%)
Query: 131 VSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLS 190
+ A + +F ++++GCG G + + G S
Sbjct: 20 NATAYAERQPRSATLTKFL----GELPAGAKILELGCGAGYQAEAMLAA-GFDVDATDGS 74
Query: 191 PVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMP--DKSKFVSE 248
P A A+ + Q D +D VW+ H+P + + +
Sbjct: 75 PELAAEASRRLGRP-------VRTMLFHQLDAID-AYDAVWAHACLLHVPRDELADVLKL 126
Query: 249 LARVTAPAGTIII 261
+ R P G
Sbjct: 127 IWRALKPGGLFYA 139
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250 | Back alignment and structure |
|---|
Score = 67.6 bits (165), Expect = 3e-13
Identities = 20/111 (18%), Positives = 42/111 (37%), Gaps = 10/111 (9%)
Query: 155 PTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARG-LADKVSFQ 213
P RP N++++G G + L + + S A++ A+G L D +++
Sbjct: 39 PFFRPGNLLELGSFKGDFTSRLQEH-FNDITCVEASE------EAISHAQGRLKDGITYI 91
Query: 214 VGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELA-RVTAPAGTIIIVT 263
+ ++D + EH+ D + + A G + +V
Sbjct: 92 HSR-FEDAQLPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVC 141
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219 | Back alignment and structure |
|---|
Score = 67.3 bits (164), Expect = 4e-13
Identities = 26/113 (23%), Positives = 42/113 (37%), Gaps = 8/113 (7%)
Query: 158 RPKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLAD----KVSF 212
K V+D+GCG G L K + G+ +S +RA L + ++S
Sbjct: 29 NAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISL 88
Query: 213 QVGDALQQPFPDGQFDLVWSMESGEHM--PDKSKFVSELARVTAPAGTIIIVT 263
+ + +D +E EH+ F L T P T+I+ T
Sbjct: 89 FQSSLVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRP-QTVIVST 140
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298 | Back alignment and structure |
|---|
Score = 68.2 bits (166), Expect = 4e-13
Identities = 28/121 (23%), Positives = 46/121 (38%), Gaps = 5/121 (4%)
Query: 156 TKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVG 215
TKR +V+D+GCG GG + + G+ ++ V A A KV F+
Sbjct: 62 TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQ 121
Query: 216 DALQQPF-PDGQFDLVWSMESGEHMPDKS----KFVSELARVTAPAGTIIIVTWCHRDLA 270
D+ + +FD++ S S + S +AR P G I+ +
Sbjct: 122 DSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVIL 181
Query: 271 P 271
Sbjct: 182 E 182
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239 | Back alignment and structure |
|---|
Score = 66.3 bits (162), Expect = 9e-13
Identities = 39/227 (17%), Positives = 73/227 (32%), Gaps = 19/227 (8%)
Query: 136 AAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQ 195
AA+ I + +R +++DV CG G + K+ G+ LS
Sbjct: 24 AAEASDIADLVRSRT------PEASSLLDVACGTGTHLEHFTKE-FGDTAGLELSE---- 72
Query: 196 RANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG----EHMPDKSKFVSELAR 251
+ L AR + GD +F V SM S + + V+ A
Sbjct: 73 --DMLTHARKRLPDATLHQGDMRDFRLG-RKFSAVVSMFSSVGYLKTTEELGAAVASFAE 129
Query: 252 VTAPAGTIIIVTWCHRD-LAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLS 310
P G +++ W + A S ++ ++ + +T V +
Sbjct: 130 HLEPGGVVVVEPWWFPETFADGWVSADVVRRDGRTVARVSHSVREGNATRMEVHFTVADP 189
Query: 311 LEDIKAEDWSQNVAPFWPAVIHSALTWKGFTSLLRTEIFTGRKVLLC 357
+ ++ + F A +A T G +GR + +
Sbjct: 190 GKGVRHFSDVHLITLFHQAEYEAAFTAAGLRVEYLEGGPSGRGLFVG 236
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252 | Back alignment and structure |
|---|
Score = 63.7 bits (155), Expect = 8e-12
Identities = 39/172 (22%), Positives = 64/172 (37%), Gaps = 33/172 (19%)
Query: 93 RELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVS 152
EL +AE+YD ++ A++ +EE +
Sbjct: 2 YELYTLLAEYYDT---IYRRRIERV------------------KAEIDFVEEIFKEDAK- 39
Query: 153 EDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSF 212
+ + V+D+ CG G + LA++ G + G+ L + A A R L K+ F
Sbjct: 40 ----REVRRVLDLACGTGIPTLELAER-GYEVVGLDLHEEMLRVARRKAKERNL--KIEF 92
Query: 213 QVGDALQQPFPDGQFDLVWSM-ESGEHM--PDKSKFVSELARVTAPAGTIII 261
GD L+ F +FD V + + D K S++A P G I
Sbjct: 93 LQGDVLEIAFK-NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFIT 143
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243 | Back alignment and structure |
|---|
Score = 62.8 bits (153), Expect = 1e-11
Identities = 38/207 (18%), Positives = 63/207 (30%), Gaps = 18/207 (8%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216
+ K + D+GCG G ++ LA + G+ LS + A A V F V D
Sbjct: 32 EPGKRIADIGCGTGTATLLLAD--HYEVTGVDLSEEMLEIAQEKAMETNR--HVDFWVQD 87
Query: 217 ALQQPFPDGQFDLVWSMESG----EHMPDKSKFVSELARVTAPAGTIII---VTWCHRDL 269
+ P+ D + + + D + AR+ G ++ + L
Sbjct: 88 MRELELPE-PVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHSPYKMETL 146
Query: 270 APSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLED--IKAEDWSQNVAPFW 327
+ EQ D P +L + ED D + + +
Sbjct: 147 FNGKTYATHAEQSSYIWFADPGEEPLSV----VHELTFFIEGEDGRYDRVDETHHQRTYP 202
Query: 328 PAVIHSALTWKGFTSLLRTEIFTGRKV 354
P + L GF T F
Sbjct: 203 PEQYITWLREAGFRVCAVTGDFKSDAP 229
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950 | Back alignment and structure |
|---|
Score = 62.9 bits (152), Expect = 6e-11
Identities = 24/115 (20%), Positives = 38/115 (33%), Gaps = 10/115 (8%)
Query: 158 RPKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRANA-----LAAARGLADKV 210
+VD GCG G L G+ +SP RA L
Sbjct: 721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSA 780
Query: 211 SFQVGDALQQPFPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIVT 263
+ G L+ D+ +E EHM + +F ++ + P +I+ T
Sbjct: 781 TLYDGSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHP-KLLIVST 834
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299 | Back alignment and structure |
|---|
Score = 61.1 bits (148), Expect = 9e-11
Identities = 36/285 (12%), Positives = 78/285 (27%), Gaps = 45/285 (15%)
Query: 78 ASSTTSTTTMSDAAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAA 137
+ + ++ R + + +FYDE ++ D + D + +
Sbjct: 29 VRTPHADVLLASVGERGV---LCDFYDEGAA---DTYRDLIQDADGTSE----------- 71
Query: 138 QVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSP--VQAQ 195
E G V+++ G+G + G + + LS + A
Sbjct: 72 ----AREFATRTG------PVSGPVLELAAGMGRLTFPFLDL-GWEVTALELSTSVLAAF 120
Query: 196 RANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSM-ESGEHMPDKS--KFVSELARV 252
R A + D+ + GD +F V S + + + +
Sbjct: 121 RKRLAEAPADVRDRCTLVQGDMSAFALD-KRFGTVVISSGSINELDEADRRGLYASVREH 179
Query: 253 TAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLE 312
P G ++ +P E++ + +Q +++
Sbjct: 180 LEPGGKFLLSLA-----MSEAAESEPLERKQELPGRSGRRY-VLHVRHLPAEEIQEITIH 233
Query: 313 DIKAEDWSQNVAP-----FWPAVIHSALTWKGFTSLLRTEIFTGR 352
V P + L GF + +T +G
Sbjct: 234 PADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFASGG 278
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 7e-10
Identities = 38/267 (14%), Positives = 70/267 (26%), Gaps = 48/267 (17%)
Query: 97 EGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPT 156
A YD+ D I E +
Sbjct: 4 NKFAHIYDK----------------LIRADV------DYKKWSDFIIEKCVENNL----- 36
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216
+ +D+ CG G + L K + LS A ++GL K D
Sbjct: 37 -VFDDYLDLACGTGNLTENLCPK-FKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQD 92
Query: 217 ALQQPFPDGQFDLVWSM-ESGEHMPDKS---KFVSELARVTAPAGTIIIVTWCHRDLAPS 272
+FDL+ +S ++ D K+ ++ G I D+ S
Sbjct: 93 ISNLNIN-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIF------DI-NS 144
Query: 273 EESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSL---EDIKAEDWSQNVA--PFW 327
L D W + + + +S + + + + +
Sbjct: 145 YYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVRDGEFYKRFDEEHEERAYK 204
Query: 328 PAVIHSALTWKGFTSLLRTEIFTGRKV 354
I L L + + ++ +KV
Sbjct: 205 EEDIEKYLKHGQLNILDKVDCYSNKKV 231
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 56.5 bits (136), Expect = 1e-09
Identities = 35/178 (19%), Positives = 44/178 (24%), Gaps = 46/178 (25%)
Query: 85 TTMSDAAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEE 144
+ S AA R +E F H GF V V I
Sbjct: 19 SGPSSAAQRLFQEDPEAF-------------LLYHRGFQS-----QVKKWPLQPVDRIAR 60
Query: 145 TLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR 204
LR V D GCG LA L+ +
Sbjct: 61 DLR-------QRPASLVVADFGCGDC----RLASSIRNPVHCFDLASLD----------- 98
Query: 205 GLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262
V D Q P D D+ S + F+ E RV P G + +
Sbjct: 99 -----PRVTVCDMAQVPLEDESVDVAVFCLS-LMGTNIRDFLEEANRVLKPGGLLKVA 150
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Length = 335 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 1e-09
Identities = 27/153 (17%), Positives = 54/153 (35%), Gaps = 17/153 (11%)
Query: 119 HHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAK 178
G P+ V V +A M A + + P V+D+ G +A+
Sbjct: 126 SEGTLSPEHPVWVQFAKAMSPMMANPAQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQ 185
Query: 179 KF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLV------- 230
A+ G+ + V + A A +G+A + G A + + + +DLV
Sbjct: 186 HNPNAEIFGVDWASV-LEVAKENARIQGVASRYHTIAGSAFEVDYGND-YDLVLLPNFLH 243
Query: 231 -WSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262
+ + + + ++ A G +I+
Sbjct: 244 HFDVA------TCEQLLRKIKTALAVEGKVIVF 270
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* Length = 241 | Back alignment and structure |
|---|
Score = 55.4 bits (133), Expect = 4e-09
Identities = 32/128 (25%), Positives = 51/128 (39%), Gaps = 25/128 (19%)
Query: 107 SSLWEDIWGDHMHHGFYEPDSSV---SVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVV 163
S + I D G++ SV +++H A R + + VV
Sbjct: 44 SRFDDGIKLDR--EGWF----SVTPEKIAEHIA---------GRVSQSFKCDV-----VV 83
Query: 164 DVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP 223
D CG+GG++ A + I + PV+ A A G+ADK+ F GD L
Sbjct: 84 DAFCGVGGNTIQFALTG-MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-S 141
Query: 224 DGQFDLVW 231
+ D+V+
Sbjct: 142 FLKADVVF 149
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197 | Back alignment and structure |
|---|
Score = 54.5 bits (131), Expect = 5e-09
Identities = 22/138 (15%), Positives = 43/138 (31%), Gaps = 13/138 (9%)
Query: 162 VVDVGCGIGGSSRYLAKKFGAKCQ--GITLSPVQAQRANALAAARGLADKVSFQVGDA-- 217
VVD CG G + +LA G + G + L D+V+
Sbjct: 26 VVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQN 85
Query: 218 ----LQQPFPDGQFDLVW----SMESGEHMPDKSKFVSELARVTAPAGTIIIVT-WCHRD 268
+ P F+L + + +S+ + G I +V +
Sbjct: 86 MDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGDT 145
Query: 269 LAPSEESLQPWEQELLKK 286
+E + + + + +K
Sbjct: 146 GFEEKEKVLEFLKGVDQK 163
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293 | Back alignment and structure |
|---|
Score = 55.0 bits (132), Expect = 9e-09
Identities = 35/191 (18%), Positives = 58/191 (30%), Gaps = 41/191 (21%)
Query: 89 DAAARELKEGIAEFYD-ESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLR 147
AA + + ++ D E++ +W+ GD A + LR
Sbjct: 12 GVAAEGIPD---QYADGEAARVWQLYIGDTRSR--------------TAEYKAWLLGLLR 54
Query: 148 FAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPV---QAQRANALAAAR 204
V+DV CG G S L ++ G + S A +
Sbjct: 55 --------QHGCHRVLDVACGTGVDSIMLVEE-GFSVTSVDASDKMLKYALKERWNRRKE 105
Query: 205 GLADKVSFQVGDALQQP---FPDGQFDLVWSM-ESGEHMPDKS-------KFVSELARVT 253
DK + + L FD V + S H+PD + +A +
Sbjct: 106 PAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMV 165
Query: 254 APAGTIIIVTW 264
P G ++I
Sbjct: 166 RPGGLLVIDHR 176
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} Length = 302 | Back alignment and structure |
|---|
Score = 53.2 bits (127), Expect = 4e-08
Identities = 18/133 (13%), Positives = 42/133 (31%), Gaps = 16/133 (12%)
Query: 147 RFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGL 206
+ + + V+ + G G A R N
Sbjct: 37 MYCSKTFLDDSNKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNS 96
Query: 207 ADKVSFQVGD-------------ALQQPFPDGQFDLV---WSMESGEHMPDKSKFVSELA 250
K + D ++++ F G+F+++ +++ H + ++ L+
Sbjct: 97 GIKTKYYKFDYIQETIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLS 156
Query: 251 RVTAPAGTIIIVT 263
+TA G ++I T
Sbjct: 157 ELTASGGKVLITT 169
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* Length = 225 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 2e-07
Identities = 12/75 (16%), Positives = 25/75 (33%), Gaps = 1/75 (1%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVG 215
+ ++DVG L ++ + Q A A GL +K+ ++
Sbjct: 14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLA 73
Query: 216 DALQQPFPDGQFDLV 230
+ L Q ++
Sbjct: 74 NGLAAFEETDQVSVI 88
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Length = 363 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 2e-07
Identities = 23/164 (14%), Positives = 48/164 (29%), Gaps = 26/164 (15%)
Query: 110 WEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGI 169
W I+ S + + PK ++D+G
Sbjct: 138 WPTIYEGLSQL---PEQVQKSWFGFDHFYSDQSFGKA----LEIVFSHHPKRLLDIGGNT 190
Query: 170 GGSSRYLAKKFGAKCQGITL-SPVQAQRANALAAARGLADKVSFQVGDAL--QQPFPDGQ 226
G + + + + + P Q + A ++++ + L PFP G
Sbjct: 191 GKWATQCVQYN-KEVEVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTG- 248
Query: 227 FDLV--------WSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262
FD V +S E + ++ +A+ + I+
Sbjct: 249 FDAVWMSQFLDCFSEE------EVISILTRVAQSIGKDSKVYIM 286
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Length = 352 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 2e-07
Identities = 20/115 (17%), Positives = 38/115 (33%), Gaps = 17/115 (14%)
Query: 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216
R + V+D+ G G + ++ Q L A A L +V F +
Sbjct: 179 RARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTT-RDAARKTIHAHDLGGRVEFFEKN 237
Query: 217 ALQQPFPDG-QFDLV--------WSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262
L +G D+V + + + + A + P G ++I+
Sbjct: 238 LLDARNFEGGAADVVMLNDCLHYFDAR------EAREVIGHAAGLVKPGGALLIL 286
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 3e-07
Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 2/78 (2%)
Query: 155 PTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQV 214
R ++D+ G G L+ + AK G+ + A A A L D++
Sbjct: 46 LPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIE 105
Query: 215 GD--ALQQPFPDGQFDLV 230
D + P + D+V
Sbjct: 106 YDLKKITDLIPKERADIV 123
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Length = 194 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 4e-07
Identities = 18/118 (15%), Positives = 47/118 (39%), Gaps = 20/118 (16%)
Query: 155 PTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR------GLAD 208
+ +++D+GCG G LA + + T++ + + A+ A+ L +
Sbjct: 49 VVDKDDDILDLGCGYGVIGIALADEVKS----TTMADINRR---AIKLAKENIKLNNLDN 101
Query: 209 -KVSFQVGDALQQPFPDGQFDLVWS---MESGEHMPDKSKFVSELARVTAPAGTIIIV 262
+ D + D +++ + + + +G+ + + + E + G I +V
Sbjct: 102 YDIRVVHSDLYENV-KDRKYNKIITNPPIRAGKEVLH--RIIEEGKELLKDNGEIWVV 156
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Length = 359 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 5e-07
Identities = 23/114 (20%), Positives = 42/114 (36%), Gaps = 18/114 (15%)
Query: 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216
K ++DVG GIG S + K F + L N AA +G+AD++ D
Sbjct: 190 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGA-IDLVNENAAEKGVADRMRGIAVD 248
Query: 217 ALQQPFPDGQFDLV--------WSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262
++ +P+ D V + + + + G ++I+
Sbjct: 249 IYKESYPEA--DAVLFCRILYSANEQ------LSTIMCKKAFDAMRSGGRLLIL 294
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 Length = 280 | Back alignment and structure |
|---|
Score = 49.0 bits (116), Expect = 8e-07
Identities = 23/119 (19%), Positives = 37/119 (31%), Gaps = 9/119 (7%)
Query: 151 VSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGIT--LSPVQAQRA--NALAAARGL 206
V E V++ G G G + L + G Q I+ A+ A N
Sbjct: 92 VHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQP 151
Query: 207 ADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265
D V D PDG D M + + ++R+ G +++
Sbjct: 152 PDNWRLVVSDLADSELPDGSVDRA-----VLDMLAPWEVLDAVSRLLVAGGVLMVYVAT 205
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 Length = 275 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 9e-07
Identities = 20/118 (16%), Positives = 35/118 (29%), Gaps = 8/118 (6%)
Query: 162 VVDVGCGIGGSSRYLAKKFGAKCQ--GITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219
+++VG G G S Y+ K + ++A + V D +
Sbjct: 114 ILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSD-IA 172
Query: 220 QPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQ 277
D +D V +PD V ++A + P + SL
Sbjct: 173 DFISDQMYDAV-----IADIPDPWNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLS 225
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* Length = 313 | Back alignment and structure |
|---|
Score = 48.8 bits (115), Expect = 1e-06
Identities = 24/139 (17%), Positives = 37/139 (26%), Gaps = 16/139 (11%)
Query: 147 RFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAA--- 203
F KR V+D+GCG GG K K ++ V ++
Sbjct: 23 EFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKN 82
Query: 204 ---RGLADKVSFQVGDALQQPFPD------GQFDLVWSMES----GEHMPDKSKFVSELA 250
F D+ ++ D FD+ E +
Sbjct: 83 RRDSEYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNAC 142
Query: 251 RVTAPAGTIIIVTWCHRDL 269
+P G I T +L
Sbjct: 143 ERLSPGGYFIGTTPNSFEL 161
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 2e-06
Identities = 16/89 (17%), Positives = 29/89 (32%), Gaps = 11/89 (12%)
Query: 155 PTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPV---QAQRANALAAARGLADKV 210
R + D+G G G + +A + A+ S A+R+ L + ++
Sbjct: 33 ADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARI 92
Query: 211 SFQVGDA-------LQQPFPDGQFDLVWS 232
D ++ PD F V
Sbjct: 93 EVLEADVTLRAKARVEAGLPDEHFHHVIM 121
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} Length = 210 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 2e-06
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Query: 156 TKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITL--SPVQAQRANALAAARGLADKVSFQ 213
K+P+ VV G G+G +S + A+ + + + + A + GL D+V Q
Sbjct: 54 IKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQ 113
Query: 214 VGDALQQPFPDGQFDLV 230
VGD L D++
Sbjct: 114 VGDPLGIAAGQRDIDIL 130
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} SCOP: c.66.1.16 PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* Length = 236 | Back alignment and structure |
|---|
Score = 47.2 bits (111), Expect = 3e-06
Identities = 27/148 (18%), Positives = 53/148 (35%), Gaps = 12/148 (8%)
Query: 126 DSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQ 185
D++ + V ET ++ + + V++VG G+ ++ + + +
Sbjct: 28 DAADTHLRILGKPVMERWETPYMHALAAAASSKGGRVLEVGFGMAIAASKVQEAPIDEHW 87
Query: 186 GITLSPVQAQRANALAAARGLADKVSFQVGDA--LQQPFPDGQFDLVW-----SMESGEH 238
I + QR A + KV G + PDG FD + E H
Sbjct: 88 IIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWH 145
Query: 239 MPDKSKFVSELARVTAPAGTIIIVTWCH 266
+ + R+ P G ++T+C+
Sbjct: 146 THQFNFIKNHAFRLLKPGG---VLTYCN 170
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 3e-06
Identities = 26/119 (21%), Positives = 40/119 (33%), Gaps = 13/119 (10%)
Query: 155 PTKRPKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSP--VQAQRANALAAARGLADKVS 211
P +VD+GCG G L K AK + SP V + R N D+
Sbjct: 219 PENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCE 278
Query: 212 FQVGDALQQPFPDGQFDLVWS-------MESGEHMPDKSKFVSELARVTAPAGTIIIVT 263
F + +AL +F+ V +++ + R G + IV
Sbjct: 279 FMINNALSGV-EPFRFNAVLCNPPFHQQHALTDNVAW--EMFHHARRCLKINGELYIVA 334
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} Length = 410 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 3e-06
Identities = 22/134 (16%), Positives = 39/134 (29%), Gaps = 20/134 (14%)
Query: 160 KNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANA-LAAARGLADKVSFQVGDAL 218
VVD+ G+G L K ++ I + A A + V+ GD
Sbjct: 95 TKVVDLTGGLGIDFIALMSK-ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFK 153
Query: 219 Q--QPFPDGQFDLVW------------SMESGEHMPDKSKFVSELAR----VTAPAGTII 260
+ D ++ + PD +EL + A +I
Sbjct: 154 EYLPLIKTFHPDYIYVDPARRSGADKRVYAIADCEPDLIPLATELLPFCSSILAKLSPMI 213
Query: 261 IVTWCHRDLAPSEE 274
+ + L +E
Sbjct: 214 DLWDTLQSLLHVQE 227
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 4e-06
Identities = 20/155 (12%), Positives = 53/155 (34%), Gaps = 14/155 (9%)
Query: 141 MIEETLRFAGVSEDPTKRPKN-VVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANA 199
MI+ + + ++ VVD G G + +LA K + + +
Sbjct: 4 MIKRPIHMSHDFLAEVLDDESIVVDATMGNGNDTAFLAGLSK-KVYAFDVQEQALGKTSQ 62
Query: 200 LAAARGLADKVSF------QVGDALQQPFPDGQFDLVWSMESGEHMPDKS----KFVSEL 249
+ G+ + + +++P F+L + + + + K + + ++
Sbjct: 63 RLSDLGI-ENTELILDGHENLDHYVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKI 121
Query: 250 ARVTAPAGTIIIVTWCHRDLAPSE-ESLQPWEQEL 283
G + I+ + D E +++ + L
Sbjct: 122 LDRLEVGGRLAIMIYYGHDGGDMEKDAVLEYVIGL 156
|
| >1im8_A YECO; methyltransferase, adenosylhomocysteine, structural genomics hypothetical protein, structure 2 function project, S2F, TR; HET: SAI; 2.20A {Haemophilus influenzae RD} SCOP: c.66.1.14 Length = 244 | Back alignment and structure |
|---|
Score = 46.4 bits (109), Expect = 5e-06
Identities = 23/151 (15%), Positives = 43/151 (28%), Gaps = 4/151 (2%)
Query: 133 DHRAAQVRMIEETLRFAG-VSEDPTKRPKNVVDVGCGIGGSSRYLAKKF---GAKCQGIT 188
D V + G ++E NV D+GC G ++ + K GI
Sbjct: 32 DMIQRSVPGYSNIITAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGID 91
Query: 189 LSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSE 248
S +R AA V D + ++ D+ +++
Sbjct: 92 NSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTLQFLPPEDRIALLTK 151
Query: 249 LARVTAPAGTIIIVTWCHRDLAPSEESLQPW 279
+ P G +++ + L
Sbjct: 152 IYEGLNPNGVLVLSEKFRFEDTKINHLLIDL 182
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* Length = 255 | Back alignment and structure |
|---|
Score = 46.1 bits (109), Expect = 6e-06
Identities = 22/126 (17%), Positives = 41/126 (32%), Gaps = 12/126 (9%)
Query: 160 KNVVDVGCGIGGSSRYLAKKFGA--KCQGITLSPVQAQRANALAAARGLADKVSFQVGDA 217
+V+ G G G + +LA G + + A+ A G D+V+ ++ D
Sbjct: 95 DFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKD- 153
Query: 218 LQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIII----VTWCHRDLAPSE 273
+ + + D V +P + V A+ P G + R
Sbjct: 154 IYEGIEEENVDHVIL-----DLPQPERVVEHAAKALKPGGFFVAYTPCSNQVMRLHEKLR 208
Query: 274 ESLQPW 279
E +
Sbjct: 209 EFKDYF 214
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* Length = 225 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 1e-05
Identities = 26/173 (15%), Positives = 45/173 (26%), Gaps = 14/173 (8%)
Query: 162 VVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLA---DKVSFQVGDA 217
+D+G G G + LA GI + + V F + A
Sbjct: 28 HIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAA 87
Query: 218 LQQPFP-DGQFDLV-----WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAP 271
PF D + W + +S +A + VT
Sbjct: 88 ESLPFELKNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSYEE 147
Query: 272 SEESLQPWEQELLKKICDAYYLPAWCS---TADYVKLLQSLSLEDIKAEDWSQ 321
+E + Y + D VK L + ++ W++
Sbjct: 148 AEIKKRGLPLLSKAYFLSEQYKAELSNSGFRIDDVKELDNEYVK-QFNSLWAK 199
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} Length = 244 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 1e-05
Identities = 11/75 (14%), Positives = 24/75 (32%), Gaps = 1/75 (1%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVG 215
+ + + D+G + K A + Q A + GL +++ + G
Sbjct: 20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKG 79
Query: 216 DALQQPFPDGQFDLV 230
+ L D +
Sbjct: 80 NGLAVIEKKDAIDTI 94
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} Length = 230 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 1e-05
Identities = 13/106 (12%), Positives = 31/106 (29%), Gaps = 3/106 (2%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVG 215
+ ++DVG +L + + Q A + GL K+ ++
Sbjct: 20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLA 79
Query: 216 DALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIII 261
+ L D + G + ++ T+++
Sbjct: 80 NGLSAFEEADNIDTI--TICGMGGRLIADILNNDIDKLQHVKTLVL 123
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... Length = 221 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 2e-05
Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 8/82 (9%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITL--SPVQAQRANALAAARGLADKVSFQV 214
P V+++G G S+ +A+ + +T+ +P A + GL DKV+
Sbjct: 57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILN 116
Query: 215 GDA------LQQPFPDGQFDLV 230
G + L++ + D+V
Sbjct: 117 GASQDLIPQLKKKYDVDTLDMV 138
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* Length = 254 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 3e-05
Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 18/81 (22%)
Query: 157 KRPKNVVDVGCG-----IGGSSRYLAKKFGAKCQGITLSP--VQAQRANALAAARGLADK 209
+ V+D+G G I A+K G K G+ + P + AN A G+ +
Sbjct: 119 RPGDKVLDLGTGSGVLAIA------AEKLGGKALGVDIDPMVLPQAEAN--AKRNGVRPR 170
Query: 210 VSFQVGDALQQPFPDGQFDLV 230
G P G FDL+
Sbjct: 171 F--LEGSLEAA-LPFGPFDLL 188
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
Score = 44.2 bits (103), Expect = 3e-05
Identities = 13/72 (18%), Positives = 27/72 (37%), Gaps = 2/72 (2%)
Query: 158 RPKNVVDVGCGIGGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGD 216
R ++V+D+GC +G + +A K+G G+ + A + +
Sbjct: 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEE-LRLPPQT 104
Query: 217 ALQQPFPDGQFD 228
P +G+
Sbjct: 105 LEGDPGAEGEEG 116
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} Length = 354 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 4e-05
Identities = 34/219 (15%), Positives = 56/219 (25%), Gaps = 48/219 (21%)
Query: 77 RASSTTSTTTMSDAAARELKEGIAEFY------------------DESSSLWEDIWGDHM 118
A S R + E + Y E + L + +
Sbjct: 115 EARREGEHPFTSPEVERRVGEALHRAYGVPVDLKRPAVRVRVDVRGEEAFLGVQLTERPL 174
Query: 119 HHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSS--RYL 176
F + S++ A + LR A V+D G G +
Sbjct: 175 SRRFPKAALRGSLTPVLAQAL------LRLADARPGMR-----VLDPFTGSGTIALEAAS 223
Query: 177 AKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLV-----W 231
+ L + A A A GL + F DA P + D +
Sbjct: 224 TLGPTSPVYAGDLDEKRLGLAREAALASGL-SWIRFLRADARHLPRFFPEVDRILANPPH 282
Query: 232 SMESGEHMPDK-------SKFVSELARVTAPAGTIIIVT 263
G + K F+ + P G + ++T
Sbjct: 283 ----GLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLT 317
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4er3_A* 3sr4_A* Length = 438 | Back alignment and structure |
|---|
Score = 44.1 bits (103), Expect = 5e-05
Identities = 21/168 (12%), Positives = 53/168 (31%), Gaps = 21/168 (12%)
Query: 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAK-CQGITLSPV------- 192
++ + + +++D VD+G G+G +A K G+ + +
Sbjct: 161 LVAQMIDEIKMTDDDL-----FVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAET 215
Query: 193 QAQRANALAAARGLAD-KVSFQVGDALQQPFPD--GQFDLVWSMESGEHMPDKSKFVSEL 249
+ G + + + GD L + + + +++ + + P+ + E
Sbjct: 216 MDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIF-VNNFAFGPEVDHQLKER 274
Query: 250 ARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWC 297
G I+ + + AP + + I L
Sbjct: 275 FANMKE-GGRIVSS---KPFAPLNFRINSRNLSDIGTIMRVVELSPLK 318
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* Length = 433 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 7e-05
Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 15/97 (15%)
Query: 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSP--VQAQRA 197
+M+ L + V + V+D+ CG+G + LA + A G+ P V+ +
Sbjct: 273 KMVARALEWLDVQPE-----DRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQ 326
Query: 198 NALAAARGLADKVSFQVGDA----LQQPFPDGQFDLV 230
N A GL V+F + +QP+ FD V
Sbjct: 327 N--ARLNGL-QNVTFYHENLEEDVTKQPWAKNGFDKV 360
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} Length = 232 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 1e-04
Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 5/79 (6%)
Query: 156 TKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITL--SPVQAQRANALAAARGLADKVSFQ 213
KN++++G IG SS A T+ + Q A A ++V
Sbjct: 69 MNNVKNILEIGTAIGYSSMQFAS-ISDDIHVTTIERNETMIQYAKQNLATYHFENQVRII 127
Query: 214 VGDALQ--QPFPDGQFDLV 230
G+AL+ + D +D++
Sbjct: 128 EGNALEQFENVNDKVYDMI 146
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Length = 192 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 1e-04
Identities = 26/100 (26%), Positives = 37/100 (37%), Gaps = 4/100 (4%)
Query: 162 VVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP 221
VDVGCG GG + LA + I +P GL D V+ GDA +
Sbjct: 37 AVDVGCGTGGVTLELAG-RVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEAL 95
Query: 222 FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIII 261
D+ SG + + + + P G II+
Sbjct: 96 CKIPDIDIAVVGGSGGELQE---ILRIIKDKLKPGGRIIV 132
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} Length = 232 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 2e-04
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 156 TKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITL--SPVQAQRANALAAARGLADKVSFQ 213
K V+++G G S+ +A + Q I P A G+A+K+S +
Sbjct: 70 LTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLR 129
Query: 214 VGDA------LQQPFPDGQFDLV 230
+G A L Q P +FDL+
Sbjct: 130 LGPALATLEQLTQGKPLPEFDLI 152
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* Length = 381 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 2e-04
Identities = 18/127 (14%), Positives = 39/127 (30%), Gaps = 20/127 (15%)
Query: 148 FAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLA 207
R + V+D+G G G + LA+ + ++ + +
Sbjct: 223 LQERLGPEGVRGRQVLDLGAGYGALTLPLARMGAE----VVGVEDDLA---SVLSLQKGL 275
Query: 208 D----KVSFQVGDALQQPFPDGQFDLVWS-------MESGEHMPDKSKFVSELARVTAPA 256
+ K D + + +FD++ + + FV+ A P
Sbjct: 276 EANALKAQALHSDVDEALTEEARFDIIVTNPPFHVGGAVILDVAQ--AFVNVAAARLRPG 333
Query: 257 GTIIIVT 263
G +V+
Sbjct: 334 GVFFLVS 340
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} Length = 225 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 2e-04
Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 8/83 (9%)
Query: 156 TKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITL--SPVQAQRANALAAARGLADKVSFQ 213
+ K V+D+G G S+ + IT A GL+DK+ +
Sbjct: 62 LMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLR 121
Query: 214 VGDA------LQQPFPDGQFDLV 230
+ A L Q+DL+
Sbjct: 122 LSPAKDTLAELIHAGQAWQYDLI 144
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} Length = 237 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 3e-04
Identities = 14/84 (16%), Positives = 25/84 (29%), Gaps = 9/84 (10%)
Query: 156 TKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITL--SPVQAQRANALAAARGLADKVSFQ 213
K ++VG G S A + + + G+ K++F
Sbjct: 68 LVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFI 127
Query: 214 VGDAL-------QQPFPDGQFDLV 230
DA+ Q +G +D
Sbjct: 128 ESDAMLALDNLLQGQESEGSYDFG 151
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* Length = 247 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 3e-04
Identities = 14/83 (16%), Positives = 29/83 (34%), Gaps = 9/83 (10%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITL--SPVQAQRANALAAARGLADKVSFQV 214
KN +++G G S A + + + + + + G+ K+ F+
Sbjct: 78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFRE 137
Query: 215 GDAL-------QQPFPDGQFDLV 230
G AL + G +D +
Sbjct: 138 GPALPVLDEMIKDEKNHGSYDFI 160
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} Length = 230 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 3e-04
Identities = 13/101 (12%), Positives = 31/101 (30%), Gaps = 24/101 (23%)
Query: 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCG---IGGSSRYLAKKF-GAKCQGITLSPVQAQ 195
I + + + + +++G G + +A+KF K +
Sbjct: 41 TPISRYI----FLKTFLRGGEVALEIGTGHTAMMAL---MAEKFFNCKVTATEVDE---- 89
Query: 196 RANALAAAR------GLADKVSFQVGDALQQPFPDGQFDLV 230
AR ++ G + + +G FD++
Sbjct: 90 --EFFEYARRNIERNNSNVRLVKSNGGII-KGVVEGTFDVI 127
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} Length = 205 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 3e-04
Identities = 26/82 (31%), Positives = 34/82 (41%), Gaps = 19/82 (23%)
Query: 157 KRPKNVVDVGCG-----IGGSSRYLAKKFGAK-CQGITLSP--VQAQRANALAAARGLAD 208
+P V DVG G I A K GAK +S + A N AA G+ D
Sbjct: 59 VKPLTVADVGTGSGILAIA------AHKLGAKSVLATDISDESMTAAEEN--AALNGIYD 110
Query: 209 KVSFQVGDALQQPFPDGQFDLV 230
++ Q L DG+FDL+
Sbjct: 111 -IALQKTSLLAD--VDGKFDLI 129
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A Length = 176 | Back alignment and structure |
|---|
Score = 39.8 bits (92), Expect = 4e-04
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 194 AQRANALAAARGLADKVSFQVGDALQQ-PFPDGQFDLVWSME-SGEHMPDKSKFVSELAR 251
+ L A G +VS + L Q + FD++ S G ++ ++E+AR
Sbjct: 30 KGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVPGSTTLHSAEILAEIAR 89
Query: 252 VTAPAGTIII 261
+ P G + +
Sbjct: 90 ILRPGGCLFL 99
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} SCOP: c.66.1.47 PDB: 3k6r_A 3a25_A* 3a26_A* Length = 278 | Back alignment and structure |
|---|
Score = 40.7 bits (95), Expect = 4e-04
Identities = 25/138 (18%), Positives = 42/138 (30%), Gaps = 17/138 (12%)
Query: 154 DPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQ 213
K + VVD+ GIG S +A AK I P + + D++S
Sbjct: 121 KVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAY 180
Query: 214 VGDALQQPFPDGQFDLVWSMESGEHM--PDKSK-FVSELARVTAPAGTIIIVTWCHRDLA 270
D P + D + M ++ F+ + + I
Sbjct: 181 NMDNRDFP-GENIADRI-------LMGYVVRTHEFIPKALSIAKDGAIIHYHNTVP---- 228
Query: 271 PSEESLQPWEQELLKKIC 288
E+ + E K+I
Sbjct: 229 --EKLMPREPFETFKRIT 244
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} Length = 248 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 5e-04
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITL--SPVQAQRANALAAARGLADKVSFQVG 215
+ K ++++G G S+ ++A++ A Q +TL AQ A G+ +V+ + G
Sbjct: 63 QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREG 122
Query: 216 DA---LQQPFPDGQFDLV 230
A L+ FDL+
Sbjct: 123 PALQSLESLGECPAFDLI 140
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} Length = 242 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 5e-04
Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 8/81 (9%)
Query: 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITL--SPVQAQRANALAAARGLADKVSFQVG 215
R K V+++G G S+ ++ Q IT + + A+ K+ ++G
Sbjct: 60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLG 119
Query: 216 DA------LQQPFPDGQFDLV 230
A L + QFD +
Sbjct: 120 PALDTLHSLLNEGGEHQFDFI 140
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} Length = 233 | Back alignment and structure |
|---|
Score = 39.9 bits (94), Expect = 6e-04
Identities = 15/80 (18%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Query: 156 TKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITL--SPVQAQRANALAAARGLADKVSFQ 213
P ++++G IG S+ +A+ + +++ + + A+ A GL ++
Sbjct: 52 MAAPARILEIGTAIGYSAIRMAQAL-PEATIVSIERDERRYEEAHKHVKALGLESRIELL 110
Query: 214 VGDA---LQQPFPDGQFDLV 230
GDA ++ FD++
Sbjct: 111 FGDALQLGEKLELYPLFDVL 130
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Length = 332 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 6e-04
Identities = 16/56 (28%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Query: 162 VVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216
VVDVG G GG L + L A A+ GL+ + VG
Sbjct: 173 VVDVGGGSGGLLSALLTAHEDLSGTVLDLQGP-ASAAHRRFLDTGLSGRAQVVVGS 227
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* Length = 284 | Back alignment and structure |
|---|
Score = 40.2 bits (95), Expect = 7e-04
Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 26/101 (25%)
Query: 141 MIEETLRFAGVSEDPTKRPKNVVDVGCG---IGGSSRYLAKKFGAKCQGITLSPVQAQRA 197
++E L K V D+G G IG S +AK A +S
Sbjct: 111 LVELALELI-----RKYGIKTVADIGTGSGAIGVS---VAKFSDAIVFATDVSS------ 156
Query: 198 NALAAAR------GLADKVSFQVGDALQQPFPD--GQFDLV 230
A+ AR G++D+ + G+ L +PF + +++
Sbjct: 157 KAVEIARKNAERHGVSDRFFVRKGEFL-EPFKEKFASIEMI 196
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} Length = 343 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 8e-04
Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 13/83 (15%)
Query: 155 PTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLAD----K 209
V+DVGCG G S A+ + +TL V A A+ A+R +
Sbjct: 193 TPHTKGKVLDVGCGAGVLSVAFARHSPKIR---LTLCDVSAP---AVEASRATLAANGVE 246
Query: 210 VSFQVGDALQQPFPDGQFDLVWS 232
+ + G+FD++ S
Sbjct: 247 GEVFASNVFSE--VKGRFDMIIS 267
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 Length = 203 | Back alignment and structure |
|---|
Score = 39.4 bits (91), Expect = 9e-04
Identities = 24/191 (12%), Positives = 48/191 (25%), Gaps = 31/191 (16%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGL---------- 206
V+ CG +L+ + G G LS +R +
Sbjct: 21 VPGARVLVPLCGKSQDMSWLSGQ-GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVY 79
Query: 207 -ADKVSFQVGDALQ-QPFPDGQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIV 262
A + GD G + + +P + ++V L + A + +++
Sbjct: 80 AAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLI 139
Query: 263 TWCHRDLAPSEESLQPW---EQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDW 319
T + + P+ + L W V + A
Sbjct: 140 TLEYD---QALLEGPPFSVPQTWL-----HRVMSGNWE-----VTKVGGQDTLHSSARGL 186
Query: 320 SQNVAPFWPAV 330
+ V
Sbjct: 187 KAGLERMDEHV 197
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Length = 334 | Back alignment and structure |
|---|
Score = 39.9 bits (94), Expect = 9e-04
Identities = 26/125 (20%), Positives = 41/125 (32%), Gaps = 20/125 (16%)
Query: 111 EDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLR---FAGVSEDPTKRPKNVVDVGC 167
ED + PD+ A E R F G S VDVG
Sbjct: 130 EDFYSYLKRC----PDAGRRFLLAMKASNLAFHEIPRLLDFRGRS---------FVDVGG 176
Query: 168 GIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQ 226
G G ++ + + A+ + A ++ ++VS GD LQ+ +G
Sbjct: 177 GSGELTKAILQAEPSARGVMLDREGS-LGVARDNLSSLLAGERVSLVGGDMLQEVPSNG- 234
Query: 227 FDLVW 231
D+
Sbjct: 235 -DIYL 238
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 371 | |||
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.96 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.96 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.95 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.95 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.93 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.91 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.89 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.89 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.89 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.89 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.88 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.88 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.88 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.88 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.88 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.88 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.88 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.88 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.87 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.87 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.87 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.87 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.87 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.86 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.86 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.86 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.86 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.86 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.85 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.85 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.85 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.84 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.84 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.84 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.83 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.83 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.83 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.83 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.83 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.83 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.83 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.83 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.82 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.82 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.82 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.81 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.81 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.81 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.81 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.81 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.81 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.81 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.81 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.81 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.81 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.8 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.8 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.8 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.8 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.79 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.79 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.79 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.79 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.78 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.78 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.78 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.78 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.78 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.78 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.78 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.77 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.77 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.77 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.76 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.76 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.76 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.76 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.76 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.75 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.75 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.75 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.75 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.75 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.74 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.74 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.74 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.73 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.73 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.73 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.73 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.73 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.72 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.72 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.72 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.72 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.71 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.69 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.69 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.69 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.68 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.68 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.68 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.68 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.68 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.68 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.67 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.67 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.67 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.67 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.67 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.67 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.67 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.66 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.66 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.66 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.65 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.65 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.65 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.65 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.65 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.65 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.65 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.65 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.64 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.64 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.64 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.63 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.63 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.63 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.63 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.63 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.63 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.63 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.62 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.62 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.61 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.61 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.61 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.6 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.6 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.6 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.6 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.6 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.6 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.6 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.59 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.59 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.59 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.59 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.59 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.59 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.59 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.59 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.59 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.59 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.58 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.58 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.58 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.58 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.58 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.58 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.58 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.58 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.57 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.57 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.57 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.57 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.57 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.56 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.56 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.56 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.55 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.55 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.55 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.55 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.54 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.54 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.54 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.54 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.54 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.54 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.53 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.53 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.52 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.52 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.52 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.52 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.52 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.51 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.51 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.51 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.5 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.5 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.5 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.49 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.49 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.48 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.47 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.47 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.47 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.47 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.46 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.46 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.46 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.45 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.45 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.45 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.45 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.44 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.42 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.4 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.39 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.39 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.37 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.37 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.36 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.35 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.35 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.34 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.34 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.34 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.33 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.33 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.33 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.33 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.33 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.33 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.32 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.32 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.32 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.31 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.3 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.3 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.29 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.29 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.29 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.28 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.28 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.27 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.27 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.26 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.26 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.26 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.26 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 99.23 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.22 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 99.21 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 99.2 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.19 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 99.18 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.17 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 99.15 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 99.15 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 99.14 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 99.13 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 99.09 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 99.08 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 99.05 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 99.03 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.03 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 98.98 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.98 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.96 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.94 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.93 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.92 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.88 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.87 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.86 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.84 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.83 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.8 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.8 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.77 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.73 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.72 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.72 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.67 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.67 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.65 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.65 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.65 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.61 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 98.48 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 98.33 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.33 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 98.31 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.3 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 98.26 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.15 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 98.13 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 98.11 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 98.1 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 98.06 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 97.98 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 97.96 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 97.91 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 97.87 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 97.84 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 97.45 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 97.35 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 97.27 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 97.22 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 97.2 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 97.18 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 96.57 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 96.52 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 96.46 | |
| 3iei_A | 334 | Leucine carboxyl methyltransferase 1; LCMT-1, S-ad | 96.16 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 96.02 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 95.94 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 95.9 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 95.87 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 95.86 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 95.82 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 95.82 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 95.78 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 95.66 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 95.51 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 95.49 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 95.4 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 95.34 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 95.21 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 95.15 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 95.13 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 95.08 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 95.03 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 95.02 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 94.97 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 94.9 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 94.88 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 94.85 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 94.8 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 94.75 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 94.74 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 94.73 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 94.72 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 94.72 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 94.69 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 94.68 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 94.6 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 94.6 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 94.55 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 94.51 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 94.41 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 94.39 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 94.38 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 94.37 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 94.31 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 94.27 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 94.23 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 94.14 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 94.09 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 94.06 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 94.04 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 94.04 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 93.93 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 93.59 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 93.45 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 93.4 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 93.39 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 93.3 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 93.23 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 93.14 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 93.13 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 93.12 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 92.88 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 92.64 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 92.59 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 92.53 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 92.44 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 92.41 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 92.36 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 92.29 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 92.2 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 92.14 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 92.05 | |
| 4f3n_A | 432 | Uncharacterized ACR, COG1565 superfamily; structur | 91.89 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 91.88 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 91.85 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 91.83 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 91.59 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 91.54 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 91.51 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 91.13 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 91.0 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 90.97 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 90.84 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 90.66 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 90.65 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 90.65 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 90.64 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 90.58 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 90.34 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 90.27 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 90.26 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 90.17 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 90.11 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 90.01 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 89.93 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 89.84 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 89.83 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 89.74 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 89.57 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 89.55 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 88.8 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 88.72 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 88.69 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 88.62 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 88.5 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 88.16 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 88.12 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 87.84 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 87.66 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 87.62 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 87.45 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 87.08 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 86.9 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 86.76 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 86.55 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 86.06 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 85.88 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 85.83 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 85.66 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 85.47 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 85.33 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 85.3 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 85.18 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 84.68 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 84.46 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 83.9 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 83.79 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 83.45 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 83.32 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 83.19 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 83.06 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 83.03 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 82.9 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 82.37 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 82.11 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 82.09 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 82.08 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 81.98 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 81.76 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 81.73 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 81.69 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 81.69 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 81.46 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 81.28 | |
| 2km1_A | 136 | Protein DRE2; yeast, antiapoptotic, protein bindin | 80.87 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 80.82 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 80.75 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 80.5 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 80.33 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 80.14 | |
| 3iht_A | 174 | S-adenosyl-L-methionine methyl transferase; YP_165 | 80.09 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 80.02 |
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.6e-28 Score=219.56 Aligned_cols=222 Identities=30% Similarity=0.500 Sum_probs=166.9
Q ss_pred HHHHHHhcccchhhHhhhcccccccccCCCCCcCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHH
Q 017428 97 EGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYL 176 (371)
Q Consensus 97 ~~i~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l 176 (371)
+.+..+||..++.|+.+++..++.+||...... ......+.++.+.+++.+.+.+ +.+|||||||+|.++..+
T Consensus 7 ~~~~~~Yd~~~~~y~~~~~~~~~~~y~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~-----~~~vLDiGcG~G~~~~~l 79 (273)
T 3bus_A 7 EEVRQMYDDFTDPFARIWGENLHFGYWEDAGAD--VSVDDATDRLTDEMIALLDVRS-----GDRVLDVGCGIGKPAVRL 79 (273)
T ss_dssp ----------------CCGGGCCCCCCCCSSCC--CCHHHHHHHHHHHHHHHSCCCT-----TCEEEEESCTTSHHHHHH
T ss_pred HHHHHHHcchHHHHHHHcCCCceEEecCCCccc--cCHHHHHHHHHHHHHHhcCCCC-----CCEEEEeCCCCCHHHHHH
Confidence 348889999999999999999999999765431 2366777888888998887665 889999999999999999
Q ss_pred HHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccCcCCHHHHHHHHHHhcCCC
Q 017428 177 AKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPA 256 (371)
Q Consensus 177 ~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lkpg 256 (371)
++.++.+|+|+|+|+.+++.+++++...++++++.+..+|+.++++++++||+|++..+++|++++..+++++.++||||
T Consensus 80 ~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pg 159 (273)
T 3bus_A 80 ATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASFDAVWALESLHHMPDRGRALREMARVLRPG 159 (273)
T ss_dssp HHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEE
T ss_pred HHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCCCccEEEEechhhhCCCHHHHHHHHHHHcCCC
Confidence 98778899999999999999999999988888899999999999888899999999999999999999999999999999
Q ss_pred cEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEEEecCCcccCccHHHH
Q 017428 257 GTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPAVI 331 (371)
Q Consensus 257 G~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~~~~~~~~~~~~ 331 (371)
|++++.++...... .......+......+....+.+.+++.++|+++||+++++........+++....
T Consensus 160 G~l~i~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 228 (273)
T 3bus_A 160 GTVAIADFVLLAPV------EGAKKEAVDAFRAGGGVLSLGGIDEYESDVRQAELVVTSTVDISAQARPSLVKTA 228 (273)
T ss_dssp EEEEEEEEEESSCC------CHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHTTCEEEEEEECHHHHTTHHHHHH
T ss_pred eEEEEEEeeccCCC------ChhHHHHHHHHHhhcCccCCCCHHHHHHHHHHcCCeEEEEEECcHhHHHHHHHHH
Confidence 99999987543211 1111122222222222334679999999999999999999888776655554443
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-28 Score=224.52 Aligned_cols=224 Identities=27% Similarity=0.470 Sum_probs=179.4
Q ss_pred HHHHHHHHHHHhccc--chhhHhhhc-ccccccccCCCCCcCcchHHHHHHHHHHHHHHHc----CCCCCCCCCCCEEEE
Q 017428 92 ARELKEGIAEFYDES--SSLWEDIWG-DHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFA----GVSEDPTKRPKNVVD 164 (371)
Q Consensus 92 ~~~~~~~i~~~yd~~--~~~y~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~VLD 164 (371)
.....+.+.+|||.. .++|+.+|+ .+++.+||..... .......+.+.+..++..+ .+.+ +.+|||
T Consensus 16 ~~~~~~~~~~~Yd~~~~~~~y~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~~~vLD 88 (297)
T 2o57_A 16 SKTVKDNAEIYYDDDDSDRFYFHVWGGEDIHVGLYKEPVD--QDEIREASLRTDEWLASELAMTGVLQR-----QAKGLD 88 (297)
T ss_dssp CHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCSCCCCSSGG--GSCHHHHHHHHHHHHHHHHHHTTCCCT-----TCEEEE
T ss_pred HHHHHHHHHHHcCCccchhHHHHHhCCCceEEEecCCCCC--CcchHHHHHHHHHHHHHHhhhccCCCC-----CCEEEE
Confidence 355667899999987 488988885 6788899976510 1126677777888888877 5554 889999
Q ss_pred ECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccCcCCHHH
Q 017428 165 VGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSK 244 (371)
Q Consensus 165 lG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~ 244 (371)
||||+|.++..+++.++.+|+|+|+|+.+++.|++++...++++++.+.++|+.++++++++||+|++..+++|++++..
T Consensus 89 iGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~ 168 (297)
T 2o57_A 89 LGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPDKLK 168 (297)
T ss_dssp ETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESCGGGCSCHHH
T ss_pred eCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEecchhhhcCCHHH
Confidence 99999999999999878899999999999999999999888888999999999999988899999999999999999999
Q ss_pred HHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEEEecCCccc
Q 017428 245 FVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVA 324 (371)
Q Consensus 245 ~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~~~~~ 324 (371)
++++++++|||||++++.++........ .. ...++ ..+..+.+.+.+++.++|+++||+++++..+...+.
T Consensus 169 ~l~~~~~~LkpgG~l~~~~~~~~~~~~~-~~----~~~~~----~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~ 239 (297)
T 2o57_A 169 VFQECARVLKPRGVMAITDPMKEDGIDK-SS----IQPIL----DRIKLHDMGSLGLYRSLAKECGLVTLRTFSRPDSLV 239 (297)
T ss_dssp HHHHHHHHEEEEEEEEEEEEEECTTCCG-GG----GHHHH----HHHTCSSCCCHHHHHHHHHHTTEEEEEEEECHHHHH
T ss_pred HHHHHHHHcCCCeEEEEEEeccCCCCch-HH----HHHHH----HHhcCCCCCCHHHHHHHHHHCCCeEEEEEECchhhH
Confidence 9999999999999999998764432211 11 11222 222334467999999999999999999988776655
Q ss_pred CccHHHH
Q 017428 325 PFWPAVI 331 (371)
Q Consensus 325 ~~~~~~~ 331 (371)
++|....
T Consensus 240 ~~~~~~~ 246 (297)
T 2o57_A 240 HHYSKVK 246 (297)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554443
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-26 Score=212.33 Aligned_cols=216 Identities=18% Similarity=0.180 Sum_probs=165.7
Q ss_pred HHHHHHHhcccchhhHhhhccccc--ccccCCCCCcCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHH
Q 017428 96 KEGIAEFYDESSSLWEDIWGDHMH--HGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSS 173 (371)
Q Consensus 96 ~~~i~~~yd~~~~~y~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~ 173 (371)
.+++..+||..+++|..+++..++ .++|..+.. .....+.+.+..++..+.+.+ +.+|||||||+|.++
T Consensus 9 ~~~i~~~Yd~~~~~~~~~~~~~~~y~~~~~~~~~~----~l~~a~~~~~~~~~~~~~~~~-----~~~vLDiGcG~G~~~ 79 (287)
T 1kpg_A 9 FANVQAHYDLSDDFFRLFLDPTQTYSCAYFERDDM----TLQEAQIAKIDLALGKLGLQP-----GMTLLDVGCGWGATM 79 (287)
T ss_dssp HHHHHHHHTSCHHHHTTTSCTTCCCSCCCCSSTTC----CHHHHHHHHHHHHHTTTTCCT-----TCEEEEETCTTSHHH
T ss_pred HHHHHHhcCCCHHHHHHhcCCCCCcceEEecCCCC----CHHHHHHHHHHHHHHHcCCCC-----cCEEEEECCcccHHH
Confidence 456999999999999998887644 577765432 267777888888888777654 889999999999999
Q ss_pred HHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccCc--CCHHHHHHHHHH
Q 017428 174 RYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHM--PDKSKFVSELAR 251 (371)
Q Consensus 174 ~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~--~~~~~~l~~~~~ 251 (371)
..+++.++.+|+|+|+|+.+++.|++++...++.+++.+..+|+.+++ ++||+|++..+++|+ .++..+++++.+
T Consensus 80 ~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~ 156 (287)
T 1kpg_A 80 MRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD---EPVDRIVSIGAFEHFGHERYDAFFSLAHR 156 (287)
T ss_dssp HHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---CCCSEEEEESCGGGTCTTTHHHHHHHHHH
T ss_pred HHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC---CCeeEEEEeCchhhcChHHHHHHHHHHHH
Confidence 999977788999999999999999999998888789999999998765 889999999999999 678999999999
Q ss_pred hcCCCcEEEEEeccCCCCCcC---ccccChHHHHHHHHHhh-ccCCCCCCCHHHHHHHHHhCCCceEEEEecCCcc
Q 017428 252 VTAPAGTIIIVTWCHRDLAPS---EESLQPWEQELLKKICD-AYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNV 323 (371)
Q Consensus 252 ~LkpgG~l~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~~~~ 323 (371)
+|||||.+++.++........ ..............+.. .+....+.+.+++.++++++||+++++..+..++
T Consensus 157 ~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~~~~~~~y 232 (287)
T 1kpg_A 157 LLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMVQECASANGFTVTRVQSLQPHY 232 (287)
T ss_dssp HSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHTTTCEEEEEEECHHHH
T ss_pred hcCCCCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCCHHHHHHHHHhCCcEEEEEEeCcHhH
Confidence 999999999988764331110 00000000011111111 1111134689999999999999999998765543
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.5e-27 Score=215.91 Aligned_cols=261 Identities=15% Similarity=0.150 Sum_probs=188.5
Q ss_pred HHHHHHHHHHhcccchhhHhhhccccc--ccccCCCCCcCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcC
Q 017428 93 RELKEGIAEFYDESSSLWEDIWGDHMH--HGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIG 170 (371)
Q Consensus 93 ~~~~~~i~~~yd~~~~~y~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG 170 (371)
...++++..+||..+++|..++++.+. .++|..+.. .....+.+.+..++..+.+++ +.+|||||||+|
T Consensus 14 ~~~~~~i~~~Yd~~~~~y~~~l~~~~~y~~~~~~~~~~----~l~~a~~~~~~~~~~~~~~~~-----~~~vLDiGcG~G 84 (302)
T 3hem_A 14 KPPVEAVRSHYDKSNEFFKLWLDPSMTYSCAYFERPDM----TLEEAQYAKRKLALDKLNLEP-----GMTLLDIGCGWG 84 (302)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHSCTTCCCSCCCCSSTTC----CHHHHHHHHHHHHHHTTCCCT-----TCEEEEETCTTS
T ss_pred cchHHHHHHhcCCCHHHHHHhcCCCCceeeEEecCCCC----CHHHHHHHHHHHHHHHcCCCC-----cCEEEEeeccCc
Confidence 345678999999999999999987654 467765432 267788888899999887665 889999999999
Q ss_pred hHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccCcCCH--------
Q 017428 171 GSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDK-------- 242 (371)
Q Consensus 171 ~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~-------- 242 (371)
.++..+++.++.+|+|+|+|+.+++.|++++...++++++.+..+|+.++ +++||+|++..+++|++++
T Consensus 85 ~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~fD~v~~~~~~~~~~d~~~~~~~~~ 161 (302)
T 3hem_A 85 STMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF---DEPVDRIVSLGAFEHFADGAGDAGFER 161 (302)
T ss_dssp HHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC---CCCCSEEEEESCGGGTTCCSSCCCTTH
T ss_pred HHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc---CCCccEEEEcchHHhcCccccccchhH
Confidence 99999999878899999999999999999999999888999999999876 6899999999999999654
Q ss_pred -HHHHHHHHHhcCCCcEEEEEeccCCCCCcCcccc---ChHH---HHHHHH-HhhccCCCCCCCHHHHHHHHHhCCCceE
Q 017428 243 -SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESL---QPWE---QELLKK-ICDAYYLPAWCSTADYVKLLQSLSLEDI 314 (371)
Q Consensus 243 -~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~---~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~ll~~aGF~~v 314 (371)
..+++++.++|||||.+++.++............ .... ..++.. ..... .+.+.+++.++++++||+++
T Consensus 162 ~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~s~~~~~~~l~~aGf~~~ 238 (302)
T 3hem_A 162 YDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGG---RLPRISQVDYYSSNAGWKVE 238 (302)
T ss_dssp HHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTC---CCCCHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcCCCC---CCCCHHHHHHHHHhCCcEEE
Confidence 7999999999999999999987654321000000 0000 011111 11111 24689999999999999999
Q ss_pred EEEecCCcccCccHHHHHhh-hcHHHHHHHHHhhcccchhHhHHHHHHHHcccccC
Q 017428 315 KAEDWSQNVAPFWPAVIHSA-LTWKGFTSLLRTEIFTGRKVLLCNHIEEDFPNALS 369 (371)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 369 (371)
+++.+..++........+.. ..+..+..+....+- -.....+..+..+|+.|.+
T Consensus 239 ~~~~~~~~y~~tl~~w~~~~~~~~~~~~~~~~~~~~-~~w~~yl~~~~~~f~~~~~ 293 (302)
T 3hem_A 239 RYHRIGANYVPTLNAWADALQAHKDEAIALKGQETC-DIYMHYLRGCSDLFRDKYT 293 (302)
T ss_dssp EEEECGGGHHHHHHHHHHHHHHTHHHHHHHHCHHHH-HHHHHHHHHHHHHHHTTSS
T ss_pred EEEeCchhHHHHHHHHHHHHHHhHHHHHHHhCHHHH-HHHHHHHHHHHHHHhCCCC
Confidence 99887776543222221111 112222222222221 1245567777788888865
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.2e-25 Score=206.02 Aligned_cols=218 Identities=17% Similarity=0.179 Sum_probs=162.4
Q ss_pred HHHHHHHHHHhcccchhhHhhhccccc--ccccCCCCCcCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcC
Q 017428 93 RELKEGIAEFYDESSSLWEDIWGDHMH--HGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIG 170 (371)
Q Consensus 93 ~~~~~~i~~~yd~~~~~y~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG 170 (371)
....+++..+||..+++|..+++..+. .++|..+.. .....+...+..++..+.+.+ +.+|||||||+|
T Consensus 32 ~~~~~~i~~~Yd~~~~~~~~~~~~~~~y~~~~~~~~~~----~l~~~~~~~~~~~~~~~~~~~-----~~~vLDiGcG~G 102 (318)
T 2fk8_A 32 RTRFEDIQAHYDVSDDFFALFQDPTRTYSCAYFEPPEL----TLEEAQYAKVDLNLDKLDLKP-----GMTLLDIGCGWG 102 (318)
T ss_dssp ------CGGGGCCCHHHHTTTSCTTCCCSCCCCSSTTC----CHHHHHHHHHHHHHTTSCCCT-----TCEEEEESCTTS
T ss_pred hhhHHHHHHhcCCCHHHHHHHcCCCCCcceeeeCCCCC----CHHHHHHHHHHHHHHhcCCCC-----cCEEEEEcccch
Confidence 455667899999999999988887544 467764332 266777788888888777654 889999999999
Q ss_pred hHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccCc--CCHHHHHHH
Q 017428 171 GSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHM--PDKSKFVSE 248 (371)
Q Consensus 171 ~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~--~~~~~~l~~ 248 (371)
.++..+++.++++|+|+|+|+.+++.|++++...++.+++.+..+|+.+++ ++||+|++..+++|+ +++..++++
T Consensus 103 ~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~fD~v~~~~~l~~~~~~~~~~~l~~ 179 (318)
T 2fk8_A 103 TTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA---EPVDRIVSIEAFEHFGHENYDDFFKR 179 (318)
T ss_dssp HHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC---CCCSEEEEESCGGGTCGGGHHHHHHH
T ss_pred HHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC---CCcCEEEEeChHHhcCHHHHHHHHHH
Confidence 999999988788999999999999999999998888778999999998764 789999999999999 678999999
Q ss_pred HHHhcCCCcEEEEEeccCCCCCcCccccCh---HHHHHHHHHhhc-cCCCCCCCHHHHHHHHHhCCCceEEEEecCCc
Q 017428 249 LARVTAPAGTIIIVTWCHRDLAPSEESLQP---WEQELLKKICDA-YYLPAWCSTADYVKLLQSLSLEDIKAEDWSQN 322 (371)
Q Consensus 249 ~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~~~ 322 (371)
+.++|||||.+++.++.............. ........+... +....+.+.+++.++|+++||+++++..+...
T Consensus 180 ~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~~~~~~~ 257 (318)
T 2fk8_A 180 CFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEMMVEHGEKAGFTVPEPLSLRPH 257 (318)
T ss_dssp HHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHHTTCBCCCCEECHHH
T ss_pred HHHhcCCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCCCHHHHHHHHHhCCCEEEEEEecchh
Confidence 999999999999998765432100000000 000000111111 11113468999999999999999988776544
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3e-23 Score=192.21 Aligned_cols=176 Identities=25% Similarity=0.423 Sum_probs=141.1
Q ss_pred HHHHHHHHHcC-CCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 017428 140 RMIEETLRFAG-VSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (371)
Q Consensus 140 ~~~~~~l~~~~-~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (371)
...+.+++.+. +. ++.+|||||||+|.++..+++.++.+|+|+|+|+.+++.|++++...++.+++.++.+|+.
T Consensus 103 ~~~~~l~~~l~~~~-----~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 177 (312)
T 3vc1_A 103 AQAEFLMDHLGQAG-----PDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNML 177 (312)
T ss_dssp HHHHHHHTTSCCCC-----TTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTT
T ss_pred HHHHHHHHHhccCC-----CCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChh
Confidence 33444555555 43 4889999999999999999998788999999999999999999999998889999999999
Q ss_pred CCCCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCC
Q 017428 219 QQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCS 298 (371)
Q Consensus 219 ~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (371)
++++++++||+|++..+++|+ ++..+++++.++|||||++++.++...... .....+... +.. .+ .+.+++
T Consensus 178 ~~~~~~~~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~---~~~~~~~~~-~~~---~~-~~~~~s 248 (312)
T 3vc1_A 178 DTPFDKGAVTASWNNESTMYV-DLHDLFSEHSRFLKVGGRYVTITGCWNPRY---GQPSKWVSQ-INA---HF-ECNIHS 248 (312)
T ss_dssp SCCCCTTCEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEEEEEECTTT---CSCCHHHHH-HHH---HH-TCCCCB
T ss_pred cCCCCCCCEeEEEECCchhhC-CHHHHHHHHHHHcCCCcEEEEEEccccccc---cchhHHHHH-HHh---hh-cCCCCC
Confidence 998888999999999999999 699999999999999999999987655432 112222211 111 11 224679
Q ss_pred HHHHHHHHHhCCCceEEEEecCCcccCccHH
Q 017428 299 TADYVKLLQSLSLEDIKAEDWSQNVAPFWPA 329 (371)
Q Consensus 299 ~~~~~~ll~~aGF~~v~~~~~~~~~~~~~~~ 329 (371)
.+++.++|+++||++++++.+.....++|..
T Consensus 249 ~~~~~~~l~~aGf~~~~~~~~~~~~~~~w~~ 279 (312)
T 3vc1_A 249 RREYLRAMADNRLVPHTIVDLTPDTLPYWEL 279 (312)
T ss_dssp HHHHHHHHHTTTEEEEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEEEeCCHHHHHHHHH
Confidence 9999999999999999999887554444443
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.89 E-value=2.2e-22 Score=180.77 Aligned_cols=164 Identities=18% Similarity=0.205 Sum_probs=132.8
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (371)
.+..++..+.+.+ +.+|||||||+|.++..+++.++.+|+|+|+|+.+++.|+++++..++.+++.+.++|+.++
T Consensus 24 ~~~~l~~~~~~~~-----~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~ 98 (256)
T 1nkv_A 24 KYATLGRVLRMKP-----GTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY 98 (256)
T ss_dssp HHHHHHHHTCCCT-----TCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC
T ss_pred HHHHHHHhcCCCC-----CCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhC
Confidence 4556666666554 88999999999999999999877899999999999999999999988877999999999998
Q ss_pred CCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHH
Q 017428 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTA 300 (371)
Q Consensus 221 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (371)
++ +++||+|++..+++|++++..++++++++|||||++++.+........ . .. +...........+.+.+
T Consensus 99 ~~-~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~-----~---~~-~~~~~~~~~~~~~~~~~ 168 (256)
T 1nkv_A 99 VA-NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPA-----T---EE-IAQACGVSSTSDFLTLP 168 (256)
T ss_dssp CC-SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCCS-----S---HH-HHHTTTCSCGGGSCCHH
T ss_pred Cc-CCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEecCcccCCCC-----h---HH-HHHHHhcccccccCCHH
Confidence 77 789999999999999999999999999999999999998754332211 0 01 11111111122467999
Q ss_pred HHHHHHHhCCCceEEEEec
Q 017428 301 DYVKLLQSLSLEDIKAEDW 319 (371)
Q Consensus 301 ~~~~ll~~aGF~~v~~~~~ 319 (371)
++.++|+++||+++++...
T Consensus 169 ~~~~~l~~aGf~~~~~~~~ 187 (256)
T 1nkv_A 169 GLVGAFDDLGYDVVEMVLA 187 (256)
T ss_dssp HHHHHHHTTTBCCCEEEEC
T ss_pred HHHHHHHHCCCeeEEEEeC
Confidence 9999999999999887643
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.89 E-value=3e-22 Score=180.50 Aligned_cols=169 Identities=22% Similarity=0.326 Sum_probs=132.6
Q ss_pred HHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC
Q 017428 142 IEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP 221 (371)
Q Consensus 142 ~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 221 (371)
+..++..+...+ +.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|++++...+++ ++.+.++|+.+++
T Consensus 26 ~~~l~~~l~~~~-----~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~l~ 98 (260)
T 1vl5_A 26 LAKLMQIAALKG-----NEEVLDVATGGGHVANAFAPF-VKKVVAFDLTEDILKVARAFIEGNGHQ-QVEYVQGDAEQMP 98 (260)
T ss_dssp HHHHHHHHTCCS-----CCEEEEETCTTCHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCC-CCC
T ss_pred HHHHHHHhCCCC-----CCEEEEEeCCCCHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEecHHhCC
Confidence 455556565554 889999999999999999887 469999999999999999999888874 7999999999999
Q ss_pred CCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHH
Q 017428 222 FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTAD 301 (371)
Q Consensus 222 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (371)
+++++||+|++..+++|++++..++++++++|||||++++.++..+.. .....+. ........... ...++.++
T Consensus 99 ~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~-~~~~~~~~ 172 (260)
T 1vl5_A 99 FTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPEN----DAFDVFY-NYVEKERDYSH-HRAWKKSD 172 (260)
T ss_dssp SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBCSS----HHHHHHH-HHHHHHHCTTC-CCCCBHHH
T ss_pred CCCCCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEEcCCCCC----HHHHHHH-HHHHHhcCccc-cCCCCHHH
Confidence 888999999999999999999999999999999999999987654321 1111111 11111111112 23578999
Q ss_pred HHHHHHhCCCceEEEEecCCcc
Q 017428 302 YVKLLQSLSLEDIKAEDWSQNV 323 (371)
Q Consensus 302 ~~~ll~~aGF~~v~~~~~~~~~ 323 (371)
+.++|+++||+++.+..+..++
T Consensus 173 ~~~~l~~aGf~~~~~~~~~~~~ 194 (260)
T 1vl5_A 173 WLKMLEEAGFELEELHCFHKTF 194 (260)
T ss_dssp HHHHHHHHTCEEEEEEEEEEEE
T ss_pred HHHHHHHCCCeEEEEEEeeccC
Confidence 9999999999998887765543
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-22 Score=183.20 Aligned_cols=167 Identities=24% Similarity=0.475 Sum_probs=133.8
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (371)
....++..+.+.+ +.+|||||||+|.++..+++.++.+|+|+|+|+.+++.|+++.... ++++++++|+.++
T Consensus 43 ~~~~~~~~~~~~~-----~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~ 114 (266)
T 3ujc_A 43 ATKKILSDIELNE-----NSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN---NKIIFEANDILTK 114 (266)
T ss_dssp HHHHHTTTCCCCT-----TCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSC---TTEEEEECCTTTC
T ss_pred HHHHHHHhcCCCC-----CCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEECccccC
Confidence 4556666665544 8899999999999999999987889999999999999999876443 5899999999999
Q ss_pred CCCCCccceEEccccccCc--CCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCC
Q 017428 221 PFPDGQFDLVWSMESGEHM--PDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCS 298 (371)
Q Consensus 221 ~~~~~~fD~v~~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (371)
++++++||+|++..+++|+ .++..+++++.++|||||.+++.++..... ..+......... ..+. .+++
T Consensus 115 ~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~----~~~~~~~~~~~~----~~~~-~~~~ 185 (266)
T 3ujc_A 115 EFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEK----ENWDDEFKEYVK----QRKY-TLIT 185 (266)
T ss_dssp CCCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCG----GGCCHHHHHHHH----HHTC-CCCC
T ss_pred CCCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCc----ccchHHHHHHHh----cCCC-CCCC
Confidence 8888999999999999999 788999999999999999999998754431 122222222221 1122 2568
Q ss_pred HHHHHHHHHhCCCceEEEEecCCccc
Q 017428 299 TADYVKLLQSLSLEDIKAEDWSQNVA 324 (371)
Q Consensus 299 ~~~~~~ll~~aGF~~v~~~~~~~~~~ 324 (371)
.+++.++|+++||+++++..+..++.
T Consensus 186 ~~~~~~~l~~~Gf~~~~~~~~~~~~~ 211 (266)
T 3ujc_A 186 VEEYADILTACNFKNVVSKDLSDYWN 211 (266)
T ss_dssp HHHHHHHHHHTTCEEEEEEECHHHHH
T ss_pred HHHHHHHHHHcCCeEEEEEeCCHHHH
Confidence 99999999999999999887766543
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.1e-22 Score=180.28 Aligned_cols=153 Identities=14% Similarity=0.136 Sum_probs=118.9
Q ss_pred CCCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSME 234 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~ 234 (371)
++.+|||||||+|..+..+++.+ +++|+|+|+|+.|++.|+++++..+...+++++++|+.++++ +.||+|++..
T Consensus 70 ~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~--~~~d~v~~~~ 147 (261)
T 4gek_A 70 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI--ENASMVVLNF 147 (261)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCC--CSEEEEEEES
T ss_pred CCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccc--cccccceeee
Confidence 48999999999999999999875 579999999999999999999988887899999999999875 4699999999
Q ss_pred cccCcCCH--HHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccC---------------CCCCC
Q 017428 235 SGEHMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYY---------------LPAWC 297 (371)
Q Consensus 235 ~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~ 297 (371)
+++|+++. ..++++++++|||||+|++.+....... .................+ .....
T Consensus 148 ~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~----~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~l~~~~~~~ 223 (261)
T 4gek_A 148 TLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDA----KVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTD 223 (261)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSH----HHHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCB
T ss_pred eeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCCCH----HHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcccccCC
Confidence 99999654 5789999999999999999986543221 111111111111100000 01135
Q ss_pred CHHHHHHHHHhCCCceEEE
Q 017428 298 STADYVKLLQSLSLEDIKA 316 (371)
Q Consensus 298 ~~~~~~~ll~~aGF~~v~~ 316 (371)
+.+++.++|+++||+.|++
T Consensus 224 s~~~~~~~L~~AGF~~ve~ 242 (261)
T 4gek_A 224 SVETHKARLHKAGFEHSEL 242 (261)
T ss_dssp CHHHHHHHHHHHTCSEEEE
T ss_pred CHHHHHHHHHHcCCCeEEE
Confidence 8899999999999998876
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.3e-21 Score=174.23 Aligned_cols=154 Identities=19% Similarity=0.267 Sum_probs=127.4
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
++.+|||||||+|.++..+++..+.+|+|+|+|+.+++.|++++...++++++.++++|+.++++++++||+|++..+++
T Consensus 46 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 125 (257)
T 3f4k_A 46 DDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEGAIY 125 (257)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEEEEEEESCSC
T ss_pred CCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEEEEEecChHh
Confidence 47899999999999999999987669999999999999999999999998889999999999988889999999999999
Q ss_pred CcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEEE
Q 017428 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAE 317 (371)
Q Consensus 238 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~ 317 (371)
|+ ++..+++++.++|||||++++.+........ .......+.. . .+.+.+.+++.++|+++||+++++.
T Consensus 126 ~~-~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~-----~~~~~~~~~~---~--~~~~~~~~~~~~~l~~aGf~~v~~~ 194 (257)
T 3f4k_A 126 NI-GFERGMNEWSKYLKKGGFIAVSEASWFTSER-----PAEIEDFWMD---A--YPEISVIPTCIDKMERAGYTPTAHF 194 (257)
T ss_dssp CC-CHHHHHHHHHTTEEEEEEEEEEEEEESSSCC-----CHHHHHHHHH---H--CTTCCBHHHHHHHHHHTTEEEEEEE
T ss_pred hc-CHHHHHHHHHHHcCCCcEEEEEEeeccCCCC-----hHHHHHHHHH---h--CCCCCCHHHHHHHHHHCCCeEEEEE
Confidence 99 8999999999999999999999854222111 1111121211 1 1235689999999999999999987
Q ss_pred ecCCc
Q 017428 318 DWSQN 322 (371)
Q Consensus 318 ~~~~~ 322 (371)
.+...
T Consensus 195 ~~~~~ 199 (257)
T 3f4k_A 195 ILPEN 199 (257)
T ss_dssp ECCGG
T ss_pred ECChh
Confidence 65543
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.9e-21 Score=173.06 Aligned_cols=170 Identities=22% Similarity=0.391 Sum_probs=134.4
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (371)
....++..+.+.+ +.+|||||||+|.++..+++. +.+|+|+|+|+.+++.+++++...+++ ++.+.++|+.++
T Consensus 9 ~~~~~~~~~~~~~-----~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~ 81 (239)
T 1xxl_A 9 SLGLMIKTAECRA-----EHRVLDIGAGAGHTALAFSPY-VQECIGVDATKEMVEVASSFAQEKGVE-NVRFQQGTAESL 81 (239)
T ss_dssp HHHHHHHHHTCCT-----TCEEEEESCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHHTCC-SEEEEECBTTBC
T ss_pred CcchHHHHhCcCC-----CCEEEEEccCcCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCC-CeEEEecccccC
Confidence 3445566666654 899999999999999999887 569999999999999999999888774 799999999999
Q ss_pred CCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHH
Q 017428 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTA 300 (371)
Q Consensus 221 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (371)
++++++||+|++..+++|++++..++++++++|||||++++.+...+.. .....+. ..+.......+. ..++.+
T Consensus 82 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~-~~~~~~ 155 (239)
T 1xxl_A 82 PFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPED----PVLDEFV-NHLNRLRDPSHV-RESSLS 155 (239)
T ss_dssp CSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBCSS----HHHHHHH-HHHHHHHCTTCC-CCCBHH
T ss_pred CCCCCcEEEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEcCCCCC----hhHHHHH-HHHHHhcccccc-CCCCHH
Confidence 8888999999999999999999999999999999999999988654321 1111111 111111122222 357899
Q ss_pred HHHHHHHhCCCceEEEEecCCcc
Q 017428 301 DYVKLLQSLSLEDIKAEDWSQNV 323 (371)
Q Consensus 301 ~~~~ll~~aGF~~v~~~~~~~~~ 323 (371)
++.++|+++||+++.+..+..++
T Consensus 156 ~~~~ll~~aGf~~~~~~~~~~~~ 178 (239)
T 1xxl_A 156 EWQAMFSANQLAYQDIQKWNLPI 178 (239)
T ss_dssp HHHHHHHHTTEEEEEEEEEEEEE
T ss_pred HHHHHHHHCCCcEEEEEeecCcc
Confidence 99999999999999888775443
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.8e-22 Score=180.11 Aligned_cols=168 Identities=24% Similarity=0.331 Sum_probs=131.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l 236 (371)
++.+|||||||+|.++..+++.. +.+|+|+|+|+.+++.+++++...+++ ++.+...|+.++++++++||+|++..++
T Consensus 37 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~~fD~v~~~~~l 115 (276)
T 3mgg_A 37 PGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIK-NVKFLQANIFSLPFEDSSFDHIFVCFVL 115 (276)
T ss_dssp TTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGCCSCTTCEEEEEEESCG
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEcccccCCCCCCCeeEEEEechh
Confidence 48899999999999999999987 689999999999999999999988874 7999999999988888999999999999
Q ss_pred cCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCC--cCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceE
Q 017428 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLA--PSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDI 314 (371)
Q Consensus 237 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v 314 (371)
+|++++..+++++.++|||||++++.+....... +.......+...+.. .....+. ..++..++.++|+++||+++
T Consensus 116 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~l~~~l~~aGf~~v 193 (276)
T 3mgg_A 116 EHLQSPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIR-VQAYMKG-NSLVGRQIYPLLQESGFEKI 193 (276)
T ss_dssp GGCSCHHHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHH-HHHHTTC-CTTGGGGHHHHHHHTTCEEE
T ss_pred hhcCCHHHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHH-HHHhcCC-CcchHHHHHHHHHHCCCCeE
Confidence 9999999999999999999999999886432211 111111111111111 1111111 24577899999999999999
Q ss_pred EEEecCCcccCccH
Q 017428 315 KAEDWSQNVAPFWP 328 (371)
Q Consensus 315 ~~~~~~~~~~~~~~ 328 (371)
+++....+...+.+
T Consensus 194 ~~~~~~~~~~~~~~ 207 (276)
T 3mgg_A 194 RVEPRMVYIDSSKP 207 (276)
T ss_dssp EEEEEEEEECTTCH
T ss_pred EEeeEEEECCCCCh
Confidence 99887766655433
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=9.6e-22 Score=177.91 Aligned_cols=153 Identities=19% Similarity=0.270 Sum_probs=127.5
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
++.+|||||||+|.++..+++..+.+|+|+|+|+.+++.|+++++..+++++++++++|+.++++++++||+|++..+++
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~~~~ 125 (267)
T 3kkz_A 46 EKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEGAIY 125 (267)
T ss_dssp TTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESSCGG
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcCCce
Confidence 48999999999999999999975569999999999999999999999998889999999999888889999999999999
Q ss_pred CcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEEE
Q 017428 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAE 317 (371)
Q Consensus 238 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~ 317 (371)
|+ ++..+++++.++|||||++++.+........ .......+. ..+ +.+.+.+++.++|+++||+++++.
T Consensus 126 ~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~-----~~~~~~~~~---~~~--~~~~~~~~~~~~l~~aGf~~v~~~ 194 (267)
T 3kkz_A 126 NI-GFERGLNEWRKYLKKGGYLAVSECSWFTDER-----PAEINDFWM---DAY--PEIDTIPNQVAKIHKAGYLPVATF 194 (267)
T ss_dssp GT-CHHHHHHHHGGGEEEEEEEEEEEEEESSSCC-----CHHHHHHHH---HHC--TTCEEHHHHHHHHHHTTEEEEEEE
T ss_pred ec-CHHHHHHHHHHHcCCCCEEEEEEeeecCCCC-----hHHHHHHHH---HhC--CCCCCHHHHHHHHHHCCCEEEEEE
Confidence 99 8999999999999999999999865322111 111112221 111 246689999999999999999988
Q ss_pred ecCC
Q 017428 318 DWSQ 321 (371)
Q Consensus 318 ~~~~ 321 (371)
.+..
T Consensus 195 ~~~~ 198 (267)
T 3kkz_A 195 ILPE 198 (267)
T ss_dssp ECCG
T ss_pred ECCH
Confidence 7654
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.7e-22 Score=179.10 Aligned_cols=170 Identities=18% Similarity=0.222 Sum_probs=127.6
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC
Q 017428 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP 221 (371)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 221 (371)
..++..+... .++.+|||||||+|.++..+++.+ +.+|+|+|+|+.+++.|++++...+ ++.++.+|+.+.+
T Consensus 33 ~~~~~~~~~~----~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~ 105 (234)
T 3dtn_A 33 GVSVSIASVD----TENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL---KVKYIEADYSKYD 105 (234)
T ss_dssp HHHHHTCCCS----CSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT---TEEEEESCTTTCC
T ss_pred HHHHHHhhcC----CCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC---CEEEEeCchhccC
Confidence 4445554422 247899999999999999999987 7899999999999999999875443 7999999999988
Q ss_pred CCCCccceEEccccccCcCCHH--HHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHh-----------
Q 017428 222 FPDGQFDLVWSMESGEHMPDKS--KFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKIC----------- 288 (371)
Q Consensus 222 ~~~~~fD~v~~~~~l~~~~~~~--~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 288 (371)
++ ++||+|++..+++|+++.. .++++++++|||||++++.+........ ........+....
T Consensus 106 ~~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 180 (234)
T 3dtn_A 106 FE-EKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAF----IENLNKTIWRQYVENSGLTEEEIA 180 (234)
T ss_dssp CC-SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHH----HHHHHHHHHHHHHHTSSCCHHHHH
T ss_pred CC-CCceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChh----hhhHHHHHHHHHHHhcCCCHHHHH
Confidence 76 8999999999999998765 5999999999999999999876543211 1111111111110
Q ss_pred ---hccCCCCCCCHHHHHHHHHhCCCceEEEEecCCccc
Q 017428 289 ---DAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVA 324 (371)
Q Consensus 289 ---~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~~~~~ 324 (371)
........++.+++.++|+++||+++++.....++.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~~~~~ 219 (234)
T 3dtn_A 181 AGYERSKLDKDIEMNQQLNWLKEAGFRDVSCIYKYYQFA 219 (234)
T ss_dssp TTC----CCCCCBHHHHHHHHHHTTCEEEEEEEEETTEE
T ss_pred HHHHhcccccccCHHHHHHHHHHcCCCceeeeeeeccee
Confidence 011122357899999999999999998876555543
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-21 Score=179.25 Aligned_cols=176 Identities=16% Similarity=0.153 Sum_probs=133.1
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 017428 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (371)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (371)
+.+..++..+.. ++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|++++...++++++.++++|+.+
T Consensus 56 ~~l~~~l~~~~~------~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 128 (285)
T 4htf_A 56 QDLDRVLAEMGP------QKLRVLDAGGGEGQTAIKMAER-GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQD 128 (285)
T ss_dssp HHHHHHHHHTCS------SCCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGG
T ss_pred HHHHHHHHhcCC------CCCEEEEeCCcchHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHH
Confidence 345566666543 2679999999999999999987 889999999999999999999988887789999999998
Q ss_pred CC-CCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHh----hccCCC
Q 017428 220 QP-FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKIC----DAYYLP 294 (371)
Q Consensus 220 ~~-~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 294 (371)
++ +++++||+|++..+++|++++..+++++.++|||||++++..+..............+ ........ ......
T Consensus 129 ~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 207 (285)
T 4htf_A 129 VASHLETPVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNF-DYVQAGMPKKKKRTLSPD 207 (285)
T ss_dssp TGGGCSSCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCH-HHHHTTCCCC----CCCS
T ss_pred hhhhcCCCceEEEECchhhcccCHHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCH-HHHhhhccccccccCCCC
Confidence 86 7789999999999999999999999999999999999999885432110000000000 00000000 001112
Q ss_pred CCCCHHHHHHHHHhCCCceEEEEecCCcc
Q 017428 295 AWCSTADYVKLLQSLSLEDIKAEDWSQNV 323 (371)
Q Consensus 295 ~~~~~~~~~~ll~~aGF~~v~~~~~~~~~ 323 (371)
.+++.+++.++|+++||+++++.......
T Consensus 208 ~~~~~~~l~~~l~~aGf~v~~~~~~~~~~ 236 (285)
T 4htf_A 208 YPRDPTQVYLWLEEAGWQIMGKTGVRVFH 236 (285)
T ss_dssp CCBCHHHHHHHHHHTTCEEEEEEEESSSG
T ss_pred CCCCHHHHHHHHHHCCCceeeeeeEEEee
Confidence 35789999999999999999998776554
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.5e-21 Score=168.80 Aligned_cols=156 Identities=22% Similarity=0.286 Sum_probs=131.5
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 017428 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (371)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (371)
..++..+.+.+ +.+|||+|||+|.++..+++.. ..+|+|+|+|+.+++.+++++...+++ ++.+..+|+.++
T Consensus 27 ~~~~~~~~~~~-----~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~ 100 (219)
T 3dh0_A 27 EKVLKEFGLKE-----GMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLK-NVEVLKSEENKI 100 (219)
T ss_dssp HHHHHHHTCCT-----TCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECBTTBC
T ss_pred HHHHHHhCCCC-----CCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEecccccC
Confidence 44555555554 7899999999999999999986 479999999999999999999888875 899999999998
Q ss_pred CCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHH
Q 017428 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTA 300 (371)
Q Consensus 221 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (371)
++++++||+|++..+++|++++..+++++.++|||||.+++.++......... .....++.+
T Consensus 101 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~------------------~~~~~~~~~ 162 (219)
T 3dh0_A 101 PLPDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKEERDKGP------------------PPEEVYSEW 162 (219)
T ss_dssp SSCSSCEEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSC------------------CGGGSCCHH
T ss_pred CCCCCCeeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEecccccccCC------------------chhcccCHH
Confidence 88889999999999999999999999999999999999999987654431110 011246899
Q ss_pred HHHHHHHhCCCceEEEEecCCc
Q 017428 301 DYVKLLQSLSLEDIKAEDWSQN 322 (371)
Q Consensus 301 ~~~~ll~~aGF~~v~~~~~~~~ 322 (371)
++.++|+++||+++++..+...
T Consensus 163 ~~~~~l~~~Gf~~~~~~~~~~~ 184 (219)
T 3dh0_A 163 EVGLILEDAGIRVGRVVEVGKY 184 (219)
T ss_dssp HHHHHHHHTTCEEEEEEEETTT
T ss_pred HHHHHHHHCCCEEEEEEeeCCc
Confidence 9999999999999998776543
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.88 E-value=3.8e-21 Score=175.63 Aligned_cols=164 Identities=19% Similarity=0.175 Sum_probs=125.3
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES 235 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~ 235 (371)
++.+|||||||+|.++..+++.+ +.+|+|+|+|+.+++.|++++...+ .++++.++|+.+++++ ++||+|++..+
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~v~~~~~d~~~~~~~-~~fD~v~~~~~ 98 (284)
T 3gu3_A 22 KPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP--YDSEFLEGDATEIELN-DKYDIAICHAF 98 (284)
T ss_dssp SCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSS--SEEEEEESCTTTCCCS-SCEEEEEEESC
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcC--CceEEEEcchhhcCcC-CCeeEEEECCh
Confidence 47899999999999999999886 4799999999999999999987655 3899999999998874 79999999999
Q ss_pred ccCcCCHHHHHHHHHHhcCCCcEEEEEeccC-----CCCC-----cCccccChHHHHHHHHHhhccCCCCCCCHHHHHHH
Q 017428 236 GEHMPDKSKFVSELARVTAPAGTIIIVTWCH-----RDLA-----PSEESLQPWEQELLKKICDAYYLPAWCSTADYVKL 305 (371)
Q Consensus 236 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~-----~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 305 (371)
++|++++..++++++++|||||++++.+... .... +....+..+ ...+.......+. .+.+..++.++
T Consensus 99 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~l~~~ 176 (284)
T 3gu3_A 99 LLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVL-QKLFESDTQRNGK-DGNIGMKIPIY 176 (284)
T ss_dssp GGGCSSHHHHHHHHHHTEEEEEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHH-HHHHHHHHHHTCC-CTTGGGTHHHH
T ss_pred hhcCCCHHHHHHHHHHHcCCCCEEEEEecchhcccccceecCcchhhccchHHH-HHHHHHHhhhhcc-cccHHHHHHHH
Confidence 9999999999999999999999999988641 1000 000111112 2223322223332 25567889999
Q ss_pred HHhCCCceEEE----EecCCcccCc
Q 017428 306 LQSLSLEDIKA----EDWSQNVAPF 326 (371)
Q Consensus 306 l~~aGF~~v~~----~~~~~~~~~~ 326 (371)
|+++||++|++ .....+...|
T Consensus 177 l~~aGF~~v~~~~~~~~~~~~~~~~ 201 (284)
T 3gu3_A 177 LSELGVKNIECRVSDKVNFLDSNMH 201 (284)
T ss_dssp HHHTTCEEEEEEECCCCEEECTTCC
T ss_pred HHHcCCCeEEEEEcCCccccCCCCC
Confidence 99999999988 3344444444
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.7e-22 Score=177.33 Aligned_cols=150 Identities=16% Similarity=0.159 Sum_probs=115.4
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 238 (371)
+.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+++++. .++.+..+|+.+++++ ++||+|++..+++|
T Consensus 46 ~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~-----~~~~~~~~d~~~~~~~-~~fD~v~~~~~l~~ 118 (220)
T 3hnr_A 46 FGNVLEFGVGTGNLTNKLLLA-GRTVYGIEPSREMRMIAKEKLP-----KEFSITEGDFLSFEVP-TSIDTIVSTYAFHH 118 (220)
T ss_dssp CSEEEEECCTTSHHHHHHHHT-TCEEEEECSCHHHHHHHHHHSC-----TTCCEESCCSSSCCCC-SCCSEEEEESCGGG
T ss_pred CCeEEEeCCCCCHHHHHHHhC-CCeEEEEeCCHHHHHHHHHhCC-----CceEEEeCChhhcCCC-CCeEEEEECcchhc
Confidence 789999999999999999987 7899999999999999998753 4799999999998877 99999999999999
Q ss_pred cCCHHH--HHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHH----hhccCCCCCCCHHHHHHHHHhCCCc
Q 017428 239 MPDKSK--FVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKI----CDAYYLPAWCSTADYVKLLQSLSLE 312 (371)
Q Consensus 239 ~~~~~~--~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ll~~aGF~ 312 (371)
+++... +++++.++|||||.+++.+....... ............. ........+.+.+++.++|+++||+
T Consensus 119 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~ 194 (220)
T 3hnr_A 119 LTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQD----AYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFH 194 (220)
T ss_dssp SCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHH----HHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHTTEE
T ss_pred CChHHHHHHHHHHHHhcCCCCEEEEEeccccChH----HHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHCCCE
Confidence 998876 99999999999999999985432211 0000000000000 0000111245899999999999999
Q ss_pred eEEEEec
Q 017428 313 DIKAEDW 319 (371)
Q Consensus 313 ~v~~~~~ 319 (371)
++.+...
T Consensus 195 v~~~~~~ 201 (220)
T 3hnr_A 195 VTFTRLN 201 (220)
T ss_dssp EEEEECS
T ss_pred EEEeecc
Confidence 8776543
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.87 E-value=7.3e-21 Score=172.71 Aligned_cols=184 Identities=14% Similarity=0.169 Sum_probs=140.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcC--CEEEEEeCCHH------HHHHHHHHHHHcC
Q 017428 134 HRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPV------QAQRANALAAARG 205 (371)
Q Consensus 134 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~--~~v~gvD~s~~------~~~~a~~~~~~~~ 205 (371)
....+.+....++..+.+.+ +.+|||||||+|.++..+++.++ .+|+|+|+|+. +++.|++++...+
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~-----~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~ 98 (275)
T 3bkx_A 24 IQRRQTAHRLAIAEAWQVKP-----GEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGP 98 (275)
T ss_dssp HHHHHHHHHHHHHHHHTCCT-----TCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHHHHcCCCC-----CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcC
Confidence 55667777888888887665 88999999999999999999863 79999999997 9999999998888
Q ss_pred CCCCeEEEEcC---CCCCCCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHH
Q 017428 206 LADKVSFQVGD---ALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQE 282 (371)
Q Consensus 206 ~~~~v~~~~~d---~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~ 282 (371)
+.+++.+..+| ...+++++++||+|++..+++|++++..+++.+.++++|||++++.++........ ........
T Consensus 99 ~~~~v~~~~~d~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~~~~~~~~--~~~~~~~~ 176 (275)
T 3bkx_A 99 LGDRLTVHFNTNLSDDLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWSMQPTALD--QIGHLQAA 176 (275)
T ss_dssp TGGGEEEECSCCTTTCCGGGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEECSSCSSGG--GHHHHHHH
T ss_pred CCCceEEEECChhhhccCCCCCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEecCCCCchh--hhhHHHHH
Confidence 76789999998 44456678899999999999999999888888888888899999999765543211 11111111
Q ss_pred HHHHHh----h--ccCCCCCCCHHHHHHHHHhCCCceEEEEecCCccc
Q 017428 283 LLKKIC----D--AYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVA 324 (371)
Q Consensus 283 ~~~~~~----~--~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~~~~~ 324 (371)
+..... . ......+++.+++.++|+++||+++++..+..+..
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~aGf~~~~~~~~~~~~~ 224 (275)
T 3bkx_A 177 MIQGLLYAIAPSDVANIRTLITPDTLAQIAHDNTWTYTAGTIVEDPTL 224 (275)
T ss_dssp HHHHHHHHHSCCTTCSCCCCCCHHHHHHHHHHHTCEEEECCCBCCTTC
T ss_pred HHHHHHhhccccccccccccCCHHHHHHHHHHCCCeeEEEEEecCCCC
Confidence 111111 1 11122367999999999999999999887755543
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.2e-22 Score=180.56 Aligned_cols=164 Identities=21% Similarity=0.203 Sum_probs=127.2
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (371)
+.+.++..+...+ +.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++ .++.++++|+.++
T Consensus 22 ~~~~l~~~~~~~~-----~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~-------~~~~~~~~d~~~~ 88 (261)
T 3ege_A 22 IVNAIINLLNLPK-----GSVIADIGAGTGGYSVALANQ-GLFVYAVEPSIVMRQQAVVH-------PQVEWFTGYAENL 88 (261)
T ss_dssp HHHHHHHHHCCCT-----TCEEEEETCTTSHHHHHHHTT-TCEEEEECSCHHHHHSSCCC-------TTEEEECCCTTSC
T ss_pred HHHHHHHHhCCCC-----CCEEEEEcCcccHHHHHHHhC-CCEEEEEeCCHHHHHHHHhc-------cCCEEEECchhhC
Confidence 4455566665544 899999999999999999985 78999999999999887653 2799999999999
Q ss_pred CCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHH
Q 017428 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTA 300 (371)
Q Consensus 221 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (371)
++++++||+|++..+++|++++..++++++++|| ||++++.++.......... ........ .... ..+.+.+
T Consensus 89 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~~~--~~~~~~~~----~~~~-~~~~~~~ 160 (261)
T 3ege_A 89 ALPDKSVDGVISILAIHHFSHLEKSFQEMQRIIR-DGTIVLLTFDIRLAQRIWL--YDYFPFLW----EDAL-RFLPLDE 160 (261)
T ss_dssp CSCTTCBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCEEEEEECGGGCCCCGG--GGTCHHHH----HHHH-TSCCHHH
T ss_pred CCCCCCEeEEEEcchHhhccCHHHHHHHHHHHhC-CcEEEEEEcCCchhHHHHH--HHHHHHHh----hhhh-hhCCCHH
Confidence 9888999999999999999999999999999999 9999998875433221110 01111111 1111 1255788
Q ss_pred HHHHHHHhCCCceEEEEecCCcccCc
Q 017428 301 DYVKLLQSLSLEDIKAEDWSQNVAPF 326 (371)
Q Consensus 301 ~~~~ll~~aGF~~v~~~~~~~~~~~~ 326 (371)
++. +|+++||+++++..+..+...|
T Consensus 161 ~~~-~l~~aGF~~v~~~~~~~p~~~~ 185 (261)
T 3ege_A 161 QIN-LLQENTKRRVEAIPFLLPHDLS 185 (261)
T ss_dssp HHH-HHHHHHCSEEEEEECCEETTCS
T ss_pred HHH-HHHHcCCCceeEEEecCCCcCc
Confidence 899 9999999999999987776544
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-21 Score=171.38 Aligned_cols=168 Identities=18% Similarity=0.168 Sum_probs=130.5
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (371)
+...++..+..++ + +|||+|||+|.++..+++..+.+|+|+|+|+.+++.|++++...++.+++.+.++|+.++
T Consensus 32 ~~~~~~~~~~~~~-----~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 105 (219)
T 3dlc_A 32 IAENIINRFGITA-----G-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNI 105 (219)
T ss_dssp HHHHHHHHHCCCE-----E-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBC
T ss_pred HHHHHHHhcCCCC-----C-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHC
Confidence 4566666666543 4 999999999999999998756799999999999999999999998878999999999999
Q ss_pred CCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhcc-----CCCC
Q 017428 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAY-----YLPA 295 (371)
Q Consensus 221 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 295 (371)
++++++||+|++..+++|++++..++++++++|||||.+++.+..... .........+......+ ....
T Consensus 106 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (219)
T 3dlc_A 106 PIEDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGFGNK------ELRDSISAEMIRKNPDWKEFNRKNIS 179 (219)
T ss_dssp SSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEECCSSH------HHHHHHHHHHHHHCTTHHHHHHHHSS
T ss_pred CCCcccccEEEECchHhhccCHHHHHHHHHHhCCCCCEEEEEeccCcH------HHHHHHHHHHHHhHHHHHhhhhhccc
Confidence 888899999999999999999999999999999999999998743221 01110111111110000 0012
Q ss_pred CCCHHHHHHHHHhCCCceEEEEecC
Q 017428 296 WCSTADYVKLLQSLSLEDIKAEDWS 320 (371)
Q Consensus 296 ~~~~~~~~~ll~~aGF~~v~~~~~~ 320 (371)
.++.+++.++|+++||+++++....
T Consensus 180 ~~~~~~~~~~l~~aGf~~v~~~~~~ 204 (219)
T 3dlc_A 180 QENVERFQNVLDEIGISSYEIILGD 204 (219)
T ss_dssp HHHHHHHHHHHHHHTCSSEEEEEET
T ss_pred cCCHHHHHHHHHHcCCCeEEEEecC
Confidence 3478999999999999998876433
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.87 E-value=7.9e-22 Score=170.92 Aligned_cols=179 Identities=15% Similarity=0.145 Sum_probs=137.0
Q ss_pred HHHHHhcccchhhHhhhcccccccccCCCCCcCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHH
Q 017428 98 GIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLA 177 (371)
Q Consensus 98 ~i~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~ 177 (371)
.+.++|+..+..|...+....... ......+..++... +.+|||+|||+|.++..++
T Consensus 4 ~~~~~y~~~a~~y~~~~~~~~~~~--------------~~~~~~l~~~~~~~---------~~~vLDiGcG~G~~~~~l~ 60 (203)
T 3h2b_A 4 DVSKAYSSPTFDAEALLGTVISAE--------------DPDRVLIEPWATGV---------DGVILDVGSGTGRWTGHLA 60 (203)
T ss_dssp HHHHHHHCTTTCHHHHTCSSCCTT--------------CTTHHHHHHHHHHC---------CSCEEEETCTTCHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHhhhhcccc--------------HHHHHHHHHHhccC---------CCeEEEecCCCCHHHHHHH
Confidence 367888888888876654321110 00122333343321 5789999999999999999
Q ss_pred HHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccCcC--CHHHHHHHHHHhcCC
Q 017428 178 KKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMP--DKSKFVSELARVTAP 255 (371)
Q Consensus 178 ~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~Lkp 255 (371)
+. +.+|+|+|+|+.+++.++++. +++.++++|+.++++++++||+|++..+++|++ ++..+++++.++|||
T Consensus 61 ~~-~~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~p 133 (203)
T 3h2b_A 61 SL-GHQIEGLEPATRLVELARQTH------PSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVED 133 (203)
T ss_dssp HT-TCCEEEECCCHHHHHHHHHHC------TTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTTHHHHHHHHHHTEEE
T ss_pred hc-CCeEEEEeCCHHHHHHHHHhC------CCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHHHHHHHHHHHHHcCC
Confidence 87 789999999999999999862 479999999999888889999999999999996 889999999999999
Q ss_pred CcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEEEecCC
Q 017428 256 AGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQ 321 (371)
Q Consensus 256 gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~~ 321 (371)
||.+++..+......... .......+++.+++.++|+++||+++++.....
T Consensus 134 gG~l~i~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~ 184 (203)
T 3h2b_A 134 GGGLLMSFFSGPSLEPMY---------------HPVATAYRWPLPELAQALETAGFQVTSSHWDPR 184 (203)
T ss_dssp EEEEEEEEECCSSCEEEC---------------CSSSCEEECCHHHHHHHHHHTTEEEEEEEECTT
T ss_pred CcEEEEEEccCCchhhhh---------------chhhhhccCCHHHHHHHHHHCCCcEEEEEecCC
Confidence 999999986544311100 001111246899999999999999999987665
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.7e-21 Score=172.06 Aligned_cols=149 Identities=21% Similarity=0.305 Sum_probs=120.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++. ...++.++++|+.++++++++||+|++..+++
T Consensus 53 ~~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~----~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 127 (242)
T 3l8d_A 53 KEAEVLDVGCGDGYGTYKLSRT-GYKAVGVDISEVMIQKGKERG----EGPDLSFIKGDLSSLPFENEQFEAIMAINSLE 127 (242)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHTTT----CBTTEEEEECBTTBCSSCTTCEEEEEEESCTT
T ss_pred CCCeEEEEcCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHhhc----ccCCceEEEcchhcCCCCCCCccEEEEcChHh
Confidence 3789999999999999999987 789999999999999998764 23589999999999988889999999999999
Q ss_pred CcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEEE
Q 017428 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAE 317 (371)
Q Consensus 238 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~ 317 (371)
|++++..++++++++|+|||.+++.++........ .. +............++++++.++|+++||++++..
T Consensus 128 ~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 198 (242)
T 3l8d_A 128 WTEEPLRALNEIKRVLKSDGYACIAILGPTAKPRE-NS--------YPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDGI 198 (242)
T ss_dssp SSSCHHHHHHHHHHHEEEEEEEEEEEECTTCGGGG-GG--------GGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred hccCHHHHHHHHHHHhCCCeEEEEEEcCCcchhhh-hh--------hhhhccccccccCCCHHHHHHHHHHcCCEEEEee
Confidence 99999999999999999999999998654322110 00 1111111112235799999999999999999987
Q ss_pred ecC
Q 017428 318 DWS 320 (371)
Q Consensus 318 ~~~ 320 (371)
...
T Consensus 199 ~~~ 201 (242)
T 3l8d_A 199 GVY 201 (242)
T ss_dssp EEE
T ss_pred ccc
Confidence 543
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-20 Score=164.56 Aligned_cols=189 Identities=20% Similarity=0.233 Sum_probs=134.0
Q ss_pred HHHHHHHHHhcccchhhHhhhcccccccccCCCCCcCcchHHHHHHHHHHHHHHHcC-CCCCCCCCCCEEEEECCCcChH
Q 017428 94 ELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAG-VSEDPTKRPKNVVDVGCGIGGS 172 (371)
Q Consensus 94 ~~~~~i~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~VLDlG~GtG~~ 172 (371)
.+.+...++|+..+..|+..+.. ........++..+. +. ++.+|||||||+|.+
T Consensus 6 ~~~~~~~~~~~~~a~~y~~~~~~--------------------~~~~~~~~~~~~l~~~~-----~~~~vLdiG~G~G~~ 60 (218)
T 3ou2_A 6 GLIESQLSYYRARASEYDATFVP--------------------YMDSAAPAALERLRAGN-----IRGDVLELASGTGYW 60 (218)
T ss_dssp HHHHHHHHHHHHHGGGHHHHHHH--------------------HHTTTHHHHHHHHTTTT-----SCSEEEEESCTTSHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhh--------------------HHHHHHHHHHHHHhcCC-----CCCeEEEECCCCCHH
Confidence 44556778888777777654322 11112344444443 22 367999999999999
Q ss_pred HHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccCcCCH--HHHHHHHH
Q 017428 173 SRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDK--SKFVSELA 250 (371)
Q Consensus 173 ~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~--~~~l~~~~ 250 (371)
+..+++. +.+|+|+|+|+.+++.+++ .+. +++.++.+|+.++ +++++||+|++..+++|+++. ..+++++.
T Consensus 61 ~~~l~~~-~~~v~~~D~s~~~~~~a~~----~~~-~~~~~~~~d~~~~-~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~ 133 (218)
T 3ou2_A 61 TRHLSGL-ADRVTALDGSAEMIAEAGR----HGL-DNVEFRQQDLFDW-TPDRQWDAVFFAHWLAHVPDDRFEAFWESVR 133 (218)
T ss_dssp HHHHHHH-SSEEEEEESCHHHHHHHGG----GCC-TTEEEEECCTTSC-CCSSCEEEEEEESCGGGSCHHHHHHHHHHHH
T ss_pred HHHHHhc-CCeEEEEeCCHHHHHHHHh----cCC-CCeEEEecccccC-CCCCceeEEEEechhhcCCHHHHHHHHHHHH
Confidence 9999998 8899999999999999987 343 5799999999987 678999999999999999885 89999999
Q ss_pred HhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHH-hhcc-------CCCCCCCHHHHHHHHHhCCCceEEEEec
Q 017428 251 RVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKI-CDAY-------YLPAWCSTADYVKLLQSLSLEDIKAEDW 319 (371)
Q Consensus 251 ~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~~~~~~~ll~~aGF~~v~~~~~ 319 (371)
++|||||.+++.++...... +........... .... ....+++.+++.++|+++||+++..+..
T Consensus 134 ~~L~pgG~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~~~ 205 (218)
T 3ou2_A 134 SAVAPGGVVEFVDVTDHERR-----LEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTALGWSCSVDEVH 205 (218)
T ss_dssp HHEEEEEEEEEEEECCCC-----------------CEEEEECTTSCEEEEECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred HHcCCCeEEEEEeCCCCccc-----cchhhhcccccceeeecCCcchhhHhhcCCCHHHHHHHHHHCCCEEEeeecc
Confidence 99999999999987653211 000000000000 0000 0123569999999999999996655443
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.86 E-value=4.8e-21 Score=182.35 Aligned_cols=154 Identities=20% Similarity=0.217 Sum_probs=122.9
Q ss_pred CCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHc-----C-C-CCCeEEEEcCCCCC------C
Q 017428 157 KRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAAR-----G-L-ADKVSFQVGDALQQ------P 221 (371)
Q Consensus 157 ~~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~-----~-~-~~~v~~~~~d~~~~------~ 221 (371)
.++.+|||||||+|.++..+++.+ +.+|+|+|+|+.+++.|+++++.. | . .+++.|+++|+.++ +
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~ 161 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG 161 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence 358899999999999999999986 569999999999999999987654 2 2 25899999999987 7
Q ss_pred CCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHH
Q 017428 222 FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTAD 301 (371)
Q Consensus 222 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (371)
+++++||+|+++.+++|++++..++++++++|||||+|++.++....... ...... ...........++.++
T Consensus 162 ~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~------~~~~~~--~~~~~~~~~~~~~~~~ 233 (383)
T 4fsd_A 162 VPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYADRRLS------EAAQQD--PILYGECLGGALYLED 233 (383)
T ss_dssp CCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEESSCCC------HHHHHC--HHHHHTTCTTCCBHHH
T ss_pred CCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEeccccccC------HhHhhh--HHHhhcccccCCCHHH
Confidence 88899999999999999999999999999999999999998865443221 111110 0111122234578999
Q ss_pred HHHHHHhCCCceEEEEe
Q 017428 302 YVKLLQSLSLEDIKAED 318 (371)
Q Consensus 302 ~~~ll~~aGF~~v~~~~ 318 (371)
+.++|+++||+++++..
T Consensus 234 ~~~ll~~aGF~~v~~~~ 250 (383)
T 4fsd_A 234 FRRLVAEAGFRDVRLVS 250 (383)
T ss_dssp HHHHHHHTTCCCEEEEE
T ss_pred HHHHHHHCCCceEEEEe
Confidence 99999999999887654
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.86 E-value=4.2e-21 Score=171.02 Aligned_cols=198 Identities=13% Similarity=0.166 Sum_probs=141.3
Q ss_pred HHHHHHHHHHHhcccchhhHhhhcccccccccCCCCCcCcchH-HHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcC
Q 017428 92 ARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDH-RAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIG 170 (371)
Q Consensus 92 ~~~~~~~i~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG 170 (371)
....++.+.+||+.....|+..++..- ..... ......++..++..+.. ..++.+|||||||+|
T Consensus 27 ~~~~~~~~~~~w~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~vLDiGcG~G 91 (241)
T 2ex4_A 27 EKQFYSKAKTYWKQIPPTVDGMLGGYG-----------HISSIDINSSRKFLQRFLREGPN----KTGTSCALDCGAGIG 91 (241)
T ss_dssp HHHHHHHHHHHHHTSCSSHHHHTTTCG-----------GGHHHHHHHHHHHHHGGGC--------CCCCSEEEEETCTTT
T ss_pred cchhHHHHHHHHhcCCccccccccCCC-----------CcchhhHHhHHHHHHHHHHhccc----CCCCCEEEEECCCCC
Confidence 356677788899887777766543210 00001 12222333333332211 124789999999999
Q ss_pred hHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccCcCCH--HHHHHH
Q 017428 171 GSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDK--SKFVSE 248 (371)
Q Consensus 171 ~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~--~~~l~~ 248 (371)
.++..+++....+|+|+|+|+.+++.|++++...+ ..++.++.+|+.++++++++||+|++..+++|+++. ..++++
T Consensus 92 ~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~ 170 (241)
T 2ex4_A 92 RITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEG-KRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRR 170 (241)
T ss_dssp HHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGG-GGEEEEEECCGGGCCCCSSCEEEEEEESCGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcC-CceEEEEEcChhhcCCCCCCEEEEEEcchhhhCCHHHHHHHHHH
Confidence 99999988755699999999999999999886653 246899999998888777899999999999999885 489999
Q ss_pred HHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEEEecCC
Q 017428 249 LARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQ 321 (371)
Q Consensus 249 ~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~~ 321 (371)
+.++|||||++++.+..... ...+. ........+.+++.++|+++||+++++.....
T Consensus 171 ~~~~LkpgG~l~i~~~~~~~----~~~~~------------~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~ 227 (241)
T 2ex4_A 171 CKGSLRPNGIIVIKDNMAQE----GVILD------------DVDSSVCRDLDVVRRIICSAGLSLLAEERQEN 227 (241)
T ss_dssp HHHHEEEEEEEEEEEEEBSS----SEEEE------------TTTTEEEEBHHHHHHHHHHTTCCEEEEEECCS
T ss_pred HHHhcCCCeEEEEEEccCCC----cceec------------ccCCcccCCHHHHHHHHHHcCCeEEEeeecCC
Confidence 99999999999998865432 00000 00000124899999999999999999876543
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.86 E-value=7.9e-21 Score=170.29 Aligned_cols=188 Identities=15% Similarity=0.143 Sum_probs=139.2
Q ss_pred HHHHHHHhcccchhhHhhhcccccccccCCCCCcCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHH
Q 017428 96 KEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRY 175 (371)
Q Consensus 96 ~~~i~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~ 175 (371)
++...++|+.....|+...... .............++..+... ++.+|||||||+|.++..
T Consensus 50 ~~~~~~~w~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~l~~l~~~-----~~~~vLDiG~G~G~~~~~ 110 (254)
T 1xtp_A 50 YGKALEYWRTVPATVSGVLGGM--------------DHVHDVDIEGSRNFIASLPGH-----GTSRALDCGAGIGRITKN 110 (254)
T ss_dssp HHHHHHHHHTSCSSHHHHTTTC--------------GGGHHHHHHHHHHHHHTSTTC-----CCSEEEEETCTTTHHHHH
T ss_pred hhhhhhHHhcCCccccceecCc--------------CccCHHHHHHHHHHHHhhccc-----CCCEEEEECCCcCHHHHH
Confidence 4456677776555555433211 113334445556677766544 378999999999999999
Q ss_pred HHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccCcC--CHHHHHHHHHHhc
Q 017428 176 LAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMP--DKSKFVSELARVT 253 (371)
Q Consensus 176 l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~L 253 (371)
+++....+|+|+|+|+.+++.|++++... .++.++++|+.++++++++||+|++..+++|++ +...++++++++|
T Consensus 111 l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L 187 (254)
T 1xtp_A 111 LLTKLYATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQAL 187 (254)
T ss_dssp THHHHCSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHE
T ss_pred HHHhhcCEEEEEeCCHHHHHHHHHHhccC---CceEEEEccHHHCCCCCCCeEEEEEcchhhhCCHHHHHHHHHHHHHhc
Confidence 98876568999999999999999987543 479999999999888889999999999999995 5789999999999
Q ss_pred CCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEEEecC
Q 017428 254 APAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWS 320 (371)
Q Consensus 254 kpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~ 320 (371)
||||++++.+........ +. .......+++.+++.++|+++||+++++....
T Consensus 188 kpgG~l~i~~~~~~~~~~----~~-----------~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 239 (254)
T 1xtp_A 188 TPNGYIFFKENCSTGDRF----LV-----------DKEDSSLTRSDIHYKRLFNESGVRVVKEAFQE 239 (254)
T ss_dssp EEEEEEEEEEEBC--CCE----EE-----------ETTTTEEEBCHHHHHHHHHHHTCCEEEEEECT
T ss_pred CCCeEEEEEecCCCcccc----ee-----------cccCCcccCCHHHHHHHHHHCCCEEEEeeecC
Confidence 999999999854322110 00 00011114589999999999999999887643
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.85 E-value=7.8e-21 Score=171.14 Aligned_cols=155 Identities=19% Similarity=0.220 Sum_probs=119.4
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.+++++ .+..+++.+.++|+.++++++++||+|++..+++
T Consensus 39 ~~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~--~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 115 (263)
T 2yqz_A 39 EEPVFLELGVGTGRIALPLIAR-GYRYIALDADAAMLEVFRQKI--AGVDRKVQVVQADARAIPLPDESVHGVIVVHLWH 115 (263)
T ss_dssp SCCEEEEETCTTSTTHHHHHTT-TCEEEEEESCHHHHHHHHHHT--TTSCTTEEEEESCTTSCCSCTTCEEEEEEESCGG
T ss_pred CCCEEEEeCCcCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHh--hccCCceEEEEcccccCCCCCCCeeEEEECCchh
Confidence 4789999999999999999987 789999999999999999987 2234689999999999888889999999999999
Q ss_pred CcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCC-----CCCCHHHHHHHHHhCCCc
Q 017428 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLP-----AWCSTADYVKLLQSLSLE 312 (371)
Q Consensus 238 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ll~~aGF~ 312 (371)
|++++..+++++.++|||||++++. +..... .....+ ...+.......+.+ .+++.+++.++|+++||+
T Consensus 116 ~~~~~~~~l~~~~~~L~pgG~l~~~-~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 189 (263)
T 2yqz_A 116 LVPDWPKVLAEAIRVLKPGGALLEG-WDQAEA----SPEWTL-QERWRAFAAEEGFPVERGLHAKRLKEVEEALRRLGLK 189 (263)
T ss_dssp GCTTHHHHHHHHHHHEEEEEEEEEE-EEEECC----CHHHHH-HHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHTTCC
T ss_pred hcCCHHHHHHHHHHHCCCCcEEEEE-ecCCCc----cHHHHH-HHHHHHHHHHhCCCcccccccCCHHHHHHHHHHcCCC
Confidence 9999999999999999999999987 332210 110001 11122222222211 245788999999999999
Q ss_pred eEEEEecCC
Q 017428 313 DIKAEDWSQ 321 (371)
Q Consensus 313 ~v~~~~~~~ 321 (371)
++.+.....
T Consensus 190 ~~~~~~~~~ 198 (263)
T 2yqz_A 190 PRTREVARW 198 (263)
T ss_dssp CEEEEEEEE
T ss_pred cceEEEeee
Confidence 877654433
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-20 Score=168.13 Aligned_cols=152 Identities=11% Similarity=0.045 Sum_probs=115.5
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 238 (371)
+.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++.. .++.++++|+.++ .++++||+|++.++++|
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~-----~~v~~~~~d~~~~-~~~~~fD~v~~~~~l~~ 115 (250)
T 2p7i_A 43 PGNLLELGSFKGDFTSRLQEH-FNDITCVEASEEAISHAQGRLK-----DGITYIHSRFEDA-QLPRRYDNIVLTHVLEH 115 (250)
T ss_dssp SSCEEEESCTTSHHHHHHTTT-CSCEEEEESCHHHHHHHHHHSC-----SCEEEEESCGGGC-CCSSCEEEEEEESCGGG
T ss_pred CCcEEEECCCCCHHHHHHHHh-CCcEEEEeCCHHHHHHHHHhhh-----CCeEEEEccHHHc-CcCCcccEEEEhhHHHh
Confidence 678999999999999999887 5689999999999999998752 2799999999887 46789999999999999
Q ss_pred cCCHHHHHHHHH-HhcCCCcEEEEEeccCCCCCcCc----cccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCce
Q 017428 239 MPDKSKFVSELA-RVTAPAGTIIIVTWCHRDLAPSE----ESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLED 313 (371)
Q Consensus 239 ~~~~~~~l~~~~-~~LkpgG~l~i~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~ 313 (371)
++++..++++++ ++|||||++++.++......... ..+..+. . +...........+++.+++.++|+++||++
T Consensus 116 ~~~~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~ 193 (250)
T 2p7i_A 116 IDDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNS-A-VTEAEFAHGHRCTYALDTLERDASRAGLQV 193 (250)
T ss_dssp CSSHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTT-C-CCHHHHHTTCCCCCCHHHHHHHHHHTTCEE
T ss_pred hcCHHHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccch-h-cccccccccccccCCHHHHHHHHHHCCCeE
Confidence 999999999999 99999999999886433210000 0000000 0 000000111123579999999999999999
Q ss_pred EEEEec
Q 017428 314 IKAEDW 319 (371)
Q Consensus 314 v~~~~~ 319 (371)
+++..+
T Consensus 194 ~~~~~~ 199 (250)
T 2p7i_A 194 TYRSGI 199 (250)
T ss_dssp EEEEEE
T ss_pred EEEeee
Confidence 988754
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.3e-20 Score=171.20 Aligned_cols=162 Identities=20% Similarity=0.232 Sum_probs=126.0
Q ss_pred CCCEEEEECCCcChHHHHHH-HHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLA-KKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES 235 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~-~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~ 235 (371)
++.+|||||||+|.++..++ ... +.+|+|+|+|+.+++.|++++...++.++++++++|+.+++++ ++||+|++..+
T Consensus 118 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~ 196 (305)
T 3ocj_A 118 PGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTR-EGYDLLTSNGL 196 (305)
T ss_dssp TTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC-SCEEEEECCSS
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCcc-CCeEEEEECCh
Confidence 48899999999999999985 333 6799999999999999999998888877799999999998877 99999999999
Q ss_pred ccCcCCHHH---HHHHHHHhcCCCcEEEEEeccCCCCCcCcc-----ccChHHHHHHHHHh---hccCCCCCCCHHHHHH
Q 017428 236 GEHMPDKSK---FVSELARVTAPAGTIIIVTWCHRDLAPSEE-----SLQPWEQELLKKIC---DAYYLPAWCSTADYVK 304 (371)
Q Consensus 236 l~~~~~~~~---~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~-----~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 304 (371)
++|++++.. ++++++++|||||++++.++.......... .............. ...+...+++.+++.+
T Consensus 197 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (305)
T 3ocj_A 197 NIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTRA 276 (305)
T ss_dssp GGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHHHH
T ss_pred hhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHHHHH
Confidence 999988765 799999999999999998876543322211 11111111111111 1122334679999999
Q ss_pred HHHhCCCceEEEEecC
Q 017428 305 LLQSLSLEDIKAEDWS 320 (371)
Q Consensus 305 ll~~aGF~~v~~~~~~ 320 (371)
+|+++||+++++....
T Consensus 277 ~l~~aGF~~v~~~~~~ 292 (305)
T 3ocj_A 277 QLEEAGFTDLRFEDDR 292 (305)
T ss_dssp HHHHTTCEEEEEECCT
T ss_pred HHHHCCCEEEEEEccc
Confidence 9999999999988633
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.6e-20 Score=166.55 Aligned_cols=145 Identities=17% Similarity=0.236 Sum_probs=122.4
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 238 (371)
+.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|++++...+...++.++++|+.+.+ ++++||+|++..+++|
T Consensus 67 ~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~l~~ 144 (235)
T 3lcc_A 67 LGRALVPGCGGGHDVVAMASP-ERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR-PTELFDLIFDYVFFCA 144 (235)
T ss_dssp CEEEEEETCTTCHHHHHHCBT-TEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC-CSSCEEEEEEESSTTT
T ss_pred CCCEEEeCCCCCHHHHHHHhC-CCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC-CCCCeeEEEEChhhhc
Confidence 459999999999999999875 78999999999999999999876555567999999999876 4579999999999999
Q ss_pred cC--CHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEE
Q 017428 239 MP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKA 316 (371)
Q Consensus 239 ~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~ 316 (371)
++ +...+++++.++|||||.+++.++...... .+.+..++.+++.++|+++||+++++
T Consensus 145 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~l~~~Gf~~~~~ 204 (235)
T 3lcc_A 145 IEPEMRPAWAKSMYELLKPDGELITLMYPITDHV--------------------GGPPYKVDVSTFEEVLVPIGFKAVSV 204 (235)
T ss_dssp SCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCC--------------------SCSSCCCCHHHHHHHHGGGTEEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCcEEEEEEecccccC--------------------CCCCccCCHHHHHHHHHHcCCeEEEE
Confidence 98 889999999999999999999886543221 11112368999999999999999999
Q ss_pred EecCCcccC
Q 017428 317 EDWSQNVAP 325 (371)
Q Consensus 317 ~~~~~~~~~ 325 (371)
+.....+.+
T Consensus 205 ~~~~~~~~~ 213 (235)
T 3lcc_A 205 EENPHAIPT 213 (235)
T ss_dssp EECTTCCTT
T ss_pred EecCCcccc
Confidence 887776644
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-20 Score=163.03 Aligned_cols=154 Identities=15% Similarity=0.159 Sum_probs=117.4
Q ss_pred HHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcC-----------CCCCe
Q 017428 142 IEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARG-----------LADKV 210 (371)
Q Consensus 142 ~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-----------~~~~v 210 (371)
+..++..+.+.+ +.+|||+|||+|..+..+++. +.+|+|+|+|+.|++.|+++..... ...++
T Consensus 11 l~~~~~~l~~~~-----~~~vLD~GCG~G~~~~~la~~-g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v 84 (203)
T 1pjz_A 11 LQQYWSSLNVVP-----GARVLVPLCGKSQDMSWLSGQ-GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGI 84 (203)
T ss_dssp HHHHHHHHCCCT-----TCEEEETTTCCSHHHHHHHHH-CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSS
T ss_pred HHHHHHhcccCC-----CCEEEEeCCCCcHhHHHHHHC-CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCcc
Confidence 344455555543 789999999999999999997 8899999999999999998764210 12579
Q ss_pred EEEEcCCCCCCCCC-CccceEEccccccCcCC--HHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHH
Q 017428 211 SFQVGDALQQPFPD-GQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKI 287 (371)
Q Consensus 211 ~~~~~d~~~~~~~~-~~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (371)
+++++|+.++++++ ++||+|++..+++|++. ...++++++++|||||++++.........
T Consensus 85 ~~~~~d~~~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~----------------- 147 (203)
T 1pjz_A 85 EIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQAL----------------- 147 (203)
T ss_dssp EEEEECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSS-----------------
T ss_pred EEEECccccCCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCccc-----------------
Confidence 99999999988665 78999999999999864 46799999999999999555543322100
Q ss_pred hhccCCCCCCCHHHHHHHHHhCCCceEEEEecCC
Q 017428 288 CDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQ 321 (371)
Q Consensus 288 ~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~~ 321 (371)
..+.+...+.+++.+++++ ||+++.++....
T Consensus 148 --~~~~~~~~~~~el~~~~~~-gf~i~~~~~~~~ 178 (203)
T 1pjz_A 148 --LEGPPFSVPQTWLHRVMSG-NWEVTKVGGQDT 178 (203)
T ss_dssp --SSSCCCCCCHHHHHHTSCS-SEEEEEEEESSC
T ss_pred --cCCCCCCCCHHHHHHHhcC-CcEEEEeccccc
Confidence 0111223589999999999 999888776554
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.2e-20 Score=168.98 Aligned_cols=163 Identities=16% Similarity=0.212 Sum_probs=123.6
Q ss_pred HHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC
Q 017428 144 ETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP 223 (371)
Q Consensus 144 ~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 223 (371)
.++..+...+ +.+|||||||+|.++..+++ .+.+|+|+|+|+.|++.++++. +++.+.++|+.++++
T Consensus 48 ~l~~~l~~~~-----~~~vLDiGcG~G~~~~~l~~-~~~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~- 114 (279)
T 3ccf_A 48 DLLQLLNPQP-----GEFILDLGCGTGQLTEKIAQ-SGAEVLGTDNAATMIEKARQNY------PHLHFDVADARNFRV- 114 (279)
T ss_dssp HHHHHHCCCT-----TCEEEEETCTTSHHHHHHHH-TTCEEEEEESCHHHHHHHHHHC------TTSCEEECCTTTCCC-
T ss_pred HHHHHhCCCC-----CCEEEEecCCCCHHHHHHHh-CCCeEEEEECCHHHHHHHHhhC------CCCEEEECChhhCCc-
Confidence 3444444443 78999999999999999998 4789999999999999998764 478999999999886
Q ss_pred CCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhh---ccC-CCCCCCH
Q 017428 224 DGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICD---AYY-LPAWCST 299 (371)
Q Consensus 224 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~ 299 (371)
+++||+|++..+++|++++..++++++++|||||++++..+...... .+.......+..... ... ...+.+.
T Consensus 115 ~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (279)
T 3ccf_A 115 DKPLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGGKGNIK----YILEALYNALETLGIHNPQALNPWYFPSI 190 (279)
T ss_dssp SSCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECTTTTH----HHHHHHHHHHHHHTCCCGGGGCCCCCCCH
T ss_pred CCCcCEEEEcchhhhCcCHHHHHHHHHHhcCCCcEEEEEecCCcchH----HHHHHHHHHHHhcCCccccCcCceeCCCH
Confidence 58999999999999999999999999999999999999876432210 111111111111111 011 1135689
Q ss_pred HHHHHHHHhCCCceEEEEecCCcc
Q 017428 300 ADYVKLLQSLSLEDIKAEDWSQNV 323 (371)
Q Consensus 300 ~~~~~ll~~aGF~~v~~~~~~~~~ 323 (371)
+++.++|+++||+++.+..+..+.
T Consensus 191 ~~~~~~l~~aGf~~~~~~~~~~~~ 214 (279)
T 3ccf_A 191 GEYVNILEKQGFDVTYAALFNRPT 214 (279)
T ss_dssp HHHHHHHHHHTEEEEEEEEEECCE
T ss_pred HHHHHHHHHcCCEEEEEEEecccc
Confidence 999999999999999887665554
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-19 Score=162.85 Aligned_cols=157 Identities=19% Similarity=0.186 Sum_probs=119.1
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (371)
....++..+... ++.+|||||||+|.++..+++.+ +.+|+|+|+|+.+++.++++ .+++.+.++|+.+
T Consensus 21 ~~~~l~~~~~~~-----~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~------~~~~~~~~~d~~~ 89 (259)
T 2p35_A 21 PARDLLAQVPLE-----RVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR------LPNTNFGKADLAT 89 (259)
T ss_dssp HHHHHHTTCCCS-----CCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHH------STTSEEEECCTTT
T ss_pred HHHHHHHhcCCC-----CCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh------CCCcEEEECChhh
Confidence 344566655544 37899999999999999999987 68999999999999999886 2579999999999
Q ss_pred CCCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHH--Hhhc-----cC
Q 017428 220 QPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKK--ICDA-----YY 292 (371)
Q Consensus 220 ~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-----~~ 292 (371)
++ ++++||+|++..+++|++++..++++++++|||||++++..+..... ............ .... ..
T Consensus 90 ~~-~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (259)
T 2p35_A 90 WK-PAQKADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPDNLQE-----PTHIAMHETADGGPWKDAFSGGGLR 163 (259)
T ss_dssp CC-CSSCEEEEEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEEECCTTS-----HHHHHHHHHHHHSTTGGGC------
T ss_pred cC-ccCCcCEEEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEeCCCCCc-----HHHHHHHHHhcCcchHHHhcccccc
Confidence 87 77899999999999999999999999999999999999988542210 000011111111 0000 01
Q ss_pred CCCCCCHHHHHHHHHhCCCceE
Q 017428 293 LPAWCSTADYVKLLQSLSLEDI 314 (371)
Q Consensus 293 ~~~~~~~~~~~~ll~~aGF~~v 314 (371)
...+.+.+++.++|+++||.+.
T Consensus 164 ~~~~~~~~~~~~~l~~aGf~v~ 185 (259)
T 2p35_A 164 RKPLPPPSDYFNALSPKSSRVD 185 (259)
T ss_dssp -CCCCCHHHHHHHHGGGEEEEE
T ss_pred ccCCCCHHHHHHHHHhcCCceE
Confidence 1236799999999999999743
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-19 Score=166.58 Aligned_cols=166 Identities=19% Similarity=0.192 Sum_probs=121.1
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC-CCCccceEEccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF-PDGQFDLVWSMESG 236 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~v~~~~~l 236 (371)
++.+|||||||+|.++..+++....+|+|+|+|+.+++.|++++...++..++.++++|+.+.++ ++++||+|++..++
T Consensus 64 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l 143 (298)
T 1ri5_A 64 RGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSF 143 (298)
T ss_dssp TTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESCG
T ss_pred CCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECchh
Confidence 37899999999999999988863349999999999999999999888776689999999999887 57899999999999
Q ss_pred cC----cCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCc-------CccccChHHH--HHHHH-Hhhcc----------C
Q 017428 237 EH----MPDKSKFVSELARVTAPAGTIIIVTWCHRDLAP-------SEESLQPWEQ--ELLKK-ICDAY----------Y 292 (371)
Q Consensus 237 ~~----~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-------~~~~~~~~~~--~~~~~-~~~~~----------~ 292 (371)
+| ..+...+++++.++|||||++++.......... ....+..... ..+.. ....+ .
T Consensus 144 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~ 223 (298)
T 1ri5_A 144 HYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVNNC 223 (298)
T ss_dssp GGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEETTSCSSE
T ss_pred hhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEEEchhhcCC
Confidence 77 456789999999999999999998754210000 0000000000 00000 00000 0
Q ss_pred CCCCCCHHHHHHHHHhCCCceEEEEecCCcc
Q 017428 293 LPAWCSTADYVKLLQSLSLEDIKAEDWSQNV 323 (371)
Q Consensus 293 ~~~~~~~~~~~~ll~~aGF~~v~~~~~~~~~ 323 (371)
...+++++++.++|+++||+++++..+...+
T Consensus 224 ~~~~~~~~~l~~ll~~aGf~~v~~~~~~~~~ 254 (298)
T 1ri5_A 224 IEYFVDFTRMVDGFKRLGLSLVERKGFIDFY 254 (298)
T ss_dssp EEECCCHHHHHHHHHTTTEEEEEEEEHHHHH
T ss_pred cccccCHHHHHHHHHHcCCEEEEecCHHHHH
Confidence 0125689999999999999999987765544
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.83 E-value=6.5e-20 Score=163.18 Aligned_cols=141 Identities=18% Similarity=0.196 Sum_probs=114.6
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--CCCCCccceEEcccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--PFPDGQFDLVWSMES 235 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD~v~~~~~ 235 (371)
++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++ +.++.+|+.+. ++++++||+|++..+
T Consensus 41 ~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~---------~~~~~~d~~~~~~~~~~~~fD~i~~~~~ 110 (240)
T 3dli_A 41 GCRRVLDIGCGRGEFLELCKEE-GIESIGVDINEDMIKFCEGK---------FNVVKSDAIEYLKSLPDKYLDGVMISHF 110 (240)
T ss_dssp TCSCEEEETCTTTHHHHHHHHH-TCCEEEECSCHHHHHHHHTT---------SEEECSCHHHHHHTSCTTCBSEEEEESC
T ss_pred CCCeEEEEeCCCCHHHHHHHhC-CCcEEEEECCHHHHHHHHhh---------cceeeccHHHHhhhcCCCCeeEEEECCc
Confidence 4789999999999999999887 78999999999999998863 78899998775 778899999999999
Q ss_pred ccCcC--CHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCce
Q 017428 236 GEHMP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLED 313 (371)
Q Consensus 236 l~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~ 313 (371)
++|++ +...++++++++|||||++++..+..... . .... .........+++.+++.++|+++||++
T Consensus 111 l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-------~----~~~~-~~~~~~~~~~~~~~~l~~~l~~aGf~~ 178 (240)
T 3dli_A 111 VEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTSL-------Y----SLIN-FYIDPTHKKPVHPETLKFILEYLGFRD 178 (240)
T ss_dssp GGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSH-------H----HHHH-HTTSTTCCSCCCHHHHHHHHHHHTCEE
T ss_pred hhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchh-------H----HHHH-HhcCccccccCCHHHHHHHHHHCCCeE
Confidence 99998 55999999999999999999987643211 0 1111 111111223578999999999999999
Q ss_pred EEEEecC
Q 017428 314 IKAEDWS 320 (371)
Q Consensus 314 v~~~~~~ 320 (371)
+++..+.
T Consensus 179 ~~~~~~~ 185 (240)
T 3dli_A 179 VKIEFFE 185 (240)
T ss_dssp EEEEEEC
T ss_pred EEEEEec
Confidence 9988776
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-19 Score=160.60 Aligned_cols=160 Identities=22% Similarity=0.297 Sum_probs=123.9
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCC----CCCeEEEEcCCCCCCCCCCccceEEcc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGL----ADKVSFQVGDALQQPFPDGQFDLVWSM 233 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~~~~fD~v~~~ 233 (371)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+++++...++ ..++.+..+|+..+++++++||+|++.
T Consensus 30 ~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 108 (235)
T 3sm3_A 30 EDDEILDIGCGSGKISLELASK-GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQ 108 (235)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEEE
T ss_pred CCCeEEEECCCCCHHHHHHHhC-CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEEc
Confidence 3789999999999999999987 78999999999999999998876665 236899999999988888999999999
Q ss_pred ccccCcCCHH---HHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhc--c-----------CCCCCC
Q 017428 234 ESGEHMPDKS---KFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDA--Y-----------YLPAWC 297 (371)
Q Consensus 234 ~~l~~~~~~~---~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----------~~~~~~ 297 (371)
.+++|++++. .+++++.++|||||.+++.++....... .+.......+...... + ....++
T Consensus 109 ~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (235)
T 3sm3_A 109 AFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLK---LYRKRYLHDFPITKEEGSFLARDPETGETEFIAHHF 185 (235)
T ss_dssp SCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSH---HHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEECB
T ss_pred chhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHH---HHHHHhhhhccchhhhcceEecccccCCcceeeEeC
Confidence 9999999887 8999999999999999999876533221 1110000101000000 0 001257
Q ss_pred CHHHHHHHHHhCCCceEEEEecCC
Q 017428 298 STADYVKLLQSLSLEDIKAEDWSQ 321 (371)
Q Consensus 298 ~~~~~~~ll~~aGF~~v~~~~~~~ 321 (371)
+.+++.++|+++||+++++.....
T Consensus 186 ~~~~l~~ll~~aGf~~~~~~~~~~ 209 (235)
T 3sm3_A 186 TEKELVFLLTDCRFEIDYFRVKEL 209 (235)
T ss_dssp CHHHHHHHHHTTTEEEEEEEEEEE
T ss_pred CHHHHHHHHHHcCCEEEEEEecce
Confidence 999999999999999998876443
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.9e-20 Score=166.05 Aligned_cols=100 Identities=24% Similarity=0.365 Sum_probs=90.0
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 238 (371)
+.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|++ .+++.+.++|++++++++++||+|++..++|+
T Consensus 40 ~~~vLDvGcGtG~~~~~l~~~-~~~v~gvD~s~~ml~~a~~-------~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~ 111 (257)
T 4hg2_A 40 RGDALDCGCGSGQASLGLAEF-FERVHAVDPGEAQIRQALR-------HPRVTYAVAPAEDTGLPPASVDVAIAAQAMHW 111 (257)
T ss_dssp SSEEEEESCTTTTTHHHHHTT-CSEEEEEESCHHHHHTCCC-------CTTEEEEECCTTCCCCCSSCEEEEEECSCCTT
T ss_pred CCCEEEEcCCCCHHHHHHHHh-CCEEEEEeCcHHhhhhhhh-------cCCceeehhhhhhhcccCCcccEEEEeeehhH
Confidence 578999999999999999987 6899999999999988764 25899999999999999999999999999977
Q ss_pred cCCHHHHHHHHHHhcCCCcEEEEEeccCC
Q 017428 239 MPDKSKFVSELARVTAPAGTIIIVTWCHR 267 (371)
Q Consensus 239 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 267 (371)
+ ++..++++++|+|||||.|++..+...
T Consensus 112 ~-~~~~~~~e~~rvLkpgG~l~~~~~~~~ 139 (257)
T 4hg2_A 112 F-DLDRFWAELRRVARPGAVFAAVTYGLT 139 (257)
T ss_dssp C-CHHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred h-hHHHHHHHHHHHcCCCCEEEEEECCCC
Confidence 6 688999999999999999999886543
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.83 E-value=5.1e-20 Score=165.10 Aligned_cols=160 Identities=15% Similarity=0.139 Sum_probs=118.1
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
++.+|||||||+|.++..+++....+|+|+|+|+.+++.|+++.. ..++.+..+|+.++++++++||+|++..+++
T Consensus 44 ~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 119 (253)
T 3g5l_A 44 NQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT----SPVVCYEQKAIEDIAIEPDAYNVVLSSLALH 119 (253)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC----CTTEEEEECCGGGCCCCTTCEEEEEEESCGG
T ss_pred CCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc----cCCeEEEEcchhhCCCCCCCeEEEEEchhhh
Confidence 488999999999999999998743399999999999999998764 3589999999999888889999999999999
Q ss_pred CcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCc---------cc-cChHHHHHHHHH-hh-c----cCCCCCCCHHH
Q 017428 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSE---------ES-LQPWEQELLKKI-CD-A----YYLPAWCSTAD 301 (371)
Q Consensus 238 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~---------~~-~~~~~~~~~~~~-~~-~----~~~~~~~~~~~ 301 (371)
|++++..++++++++|||||.+++............ .. ...+. .++... .. . .......+.++
T Consensus 120 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~t~~~ 198 (253)
T 3g5l_A 120 YIASFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVD-RYFNESMRTSHFLGEDVQKYHRTVTT 198 (253)
T ss_dssp GCSCHHHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEEC-CTTCCCEEEEEETTEEEEEECCCHHH
T ss_pred hhhhHHHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEec-cccccceEEEeeccccCccEecCHHH
Confidence 999999999999999999999999753211000000 00 00000 000000 00 0 00000238999
Q ss_pred HHHHHHhCCCceEEEEecCCc
Q 017428 302 YVKLLQSLSLEDIKAEDWSQN 322 (371)
Q Consensus 302 ~~~ll~~aGF~~v~~~~~~~~ 322 (371)
+.++|+++||+++++.+...+
T Consensus 199 ~~~~l~~aGF~~~~~~e~~~~ 219 (253)
T 3g5l_A 199 YIQTLLKNGFQINSVIEPEPA 219 (253)
T ss_dssp HHHHHHHTTEEEEEEECCCCC
T ss_pred HHHHHHHcCCeeeeeecCCCc
Confidence 999999999999998876544
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.9e-19 Score=163.49 Aligned_cols=160 Identities=21% Similarity=0.277 Sum_probs=121.4
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHc-CCCCCeEEEEcCCCCCCCCC------Cccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAAR-GLADKVSFQVGDALQQPFPD------GQFD 228 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~-~~~~~v~~~~~d~~~~~~~~------~~fD 228 (371)
++.+|||||||+|.++..+++.+ +.+|+|+|+|+.+++.|+++++.. +..+++.++++|+.++++++ ++||
T Consensus 36 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 115 (299)
T 3g5t_A 36 ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKID 115 (299)
T ss_dssp CCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCee
Confidence 38899999999999999999754 789999999999999999999886 44579999999999988776 8999
Q ss_pred eEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCC--CCHHHHHHHH
Q 017428 229 LVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAW--CSTADYVKLL 306 (371)
Q Consensus 229 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ll 306 (371)
+|++..+++|+ ++..+++++.++|||||.|++.++..+.... ...+......+... .....+.+ ...+.+.+++
T Consensus 116 ~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~w~~p~~~~~~~~l 191 (299)
T 3g5t_A 116 MITAVECAHWF-DFEKFQRSAYANLRKDGTIAIWGYADPIFPD-YPEFDDLMIEVPYG--KQGLGPYWEQPGRSRLRNML 191 (299)
T ss_dssp EEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEEEEEEEECTT-CGGGTTHHHHHHHC--TTTTGGGSCTTHHHHHHTTT
T ss_pred EEeHhhHHHHh-CHHHHHHHHHHhcCCCcEEEEEecCCccccC-cHHHHHHHHHhccC--cccccchhhchhhHHHHHhh
Confidence 99999999999 9999999999999999999996654322211 11222222222211 00111112 2566789999
Q ss_pred HhCCC-----ceEEEEecCC
Q 017428 307 QSLSL-----EDIKAEDWSQ 321 (371)
Q Consensus 307 ~~aGF-----~~v~~~~~~~ 321 (371)
+++|| ..++...+..
T Consensus 192 ~~~gfp~~~f~~v~~~~~~~ 211 (299)
T 3g5t_A 192 KDSHLDPELFHDIQVSYFCA 211 (299)
T ss_dssp TTCCCCTTTEEEEEEEEECG
T ss_pred hccCCChHHcCcceEEEecc
Confidence 99999 6776666644
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.83 E-value=6.9e-20 Score=159.66 Aligned_cols=139 Identities=15% Similarity=0.152 Sum_probs=114.6
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.+++++ ++.+..+|+.+++ ++++||+|++..+++
T Consensus 43 ~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~-------~~~~~~~d~~~~~-~~~~fD~v~~~~~l~ 113 (211)
T 3e23_A 43 AGAKILELGCGAGYQAEAMLAA-GFDVDATDGSPELAAEASRRL-------GRPVRTMLFHQLD-AIDAYDAVWAHACLL 113 (211)
T ss_dssp TTCEEEESSCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHH-------TSCCEECCGGGCC-CCSCEEEEEECSCGG
T ss_pred CCCcEEEECCCCCHHHHHHHHc-CCeEEEECCCHHHHHHHHHhc-------CCceEEeeeccCC-CCCcEEEEEecCchh
Confidence 3789999999999999999987 789999999999999999876 4678899998888 779999999999999
Q ss_pred CcC--CHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCC-CceE
Q 017428 238 HMP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLS-LEDI 314 (371)
Q Consensus 238 ~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aG-F~~v 314 (371)
|++ +...++++++++|||||++++.......... ... .....+++.+++.++|+++| |+++
T Consensus 114 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~--~~~--------------~~~~~~~~~~~~~~~l~~aG~f~~~ 177 (211)
T 3e23_A 114 HVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGR--DKL--------------ARYYNYPSEEWLRARYAEAGTWASV 177 (211)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEE--CTT--------------SCEECCCCHHHHHHHHHHHCCCSEE
T ss_pred hcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccc--ccc--------------chhccCCCHHHHHHHHHhCCCcEEE
Confidence 998 7789999999999999999998654322110 000 00113579999999999999 9999
Q ss_pred EEEecCC
Q 017428 315 KAEDWSQ 321 (371)
Q Consensus 315 ~~~~~~~ 321 (371)
++.....
T Consensus 178 ~~~~~~~ 184 (211)
T 3e23_A 178 AVESSEG 184 (211)
T ss_dssp EEEEEEE
T ss_pred EEEeccC
Confidence 8876543
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-18 Score=164.06 Aligned_cols=162 Identities=20% Similarity=0.265 Sum_probs=128.4
Q ss_pred HHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 017428 142 IEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (371)
Q Consensus 142 ~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (371)
...++..+.... ..+|||||||+|.++..+++.+ +.+++++|+ +.+++.|++++...++.+++++..+|+. .
T Consensus 191 ~~~l~~~~~~~~-----~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~-~ 263 (369)
T 3gwz_A 191 AGQVAAAYDFSG-----AATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFF-E 263 (369)
T ss_dssp HHHHHHHSCCTT-----CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-T
T ss_pred HHHHHHhCCCcc-----CcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCC-C
Confidence 455666665544 7899999999999999999987 679999999 9999999999999888889999999998 4
Q ss_pred CCCCCccceEEccccccCcCCHH--HHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCC
Q 017428 221 PFPDGQFDLVWSMESGEHMPDKS--KFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCS 298 (371)
Q Consensus 221 ~~~~~~fD~v~~~~~l~~~~~~~--~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (371)
+++. .||+|++.++++++++.. .++++++++|+|||+|++.+...+...... ..+ ..+.-... .+ ...++
T Consensus 264 ~~p~-~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~---~~~-~d~~~~~~--~~-g~~~t 335 (369)
T 3gwz_A 264 TIPD-GADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAAS---TLF-VDLLLLVL--VG-GAERS 335 (369)
T ss_dssp CCCS-SCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHH---HHH-HHHHHHHH--HS-CCCBC
T ss_pred CCCC-CceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCc---hhH-hhHHHHhh--cC-CccCC
Confidence 5555 899999999999998875 799999999999999999997655432111 111 11111111 11 12468
Q ss_pred HHHHHHHHHhCCCceEEEEe
Q 017428 299 TADYVKLLQSLSLEDIKAED 318 (371)
Q Consensus 299 ~~~~~~ll~~aGF~~v~~~~ 318 (371)
.++|.++|+++||+++++..
T Consensus 336 ~~e~~~ll~~aGf~~~~~~~ 355 (369)
T 3gwz_A 336 ESEFAALLEKSGLRVERSLP 355 (369)
T ss_dssp HHHHHHHHHTTTEEEEEEEE
T ss_pred HHHHHHHHHHCCCeEEEEEE
Confidence 99999999999999999876
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=7.2e-19 Score=164.14 Aligned_cols=151 Identities=19% Similarity=0.122 Sum_probs=121.5
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l 236 (371)
+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.|++++...++.++++|..+|+. .+++. +||+|++.+++
T Consensus 169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~p~-~~D~v~~~~vl 245 (332)
T 3i53_A 169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFF-DPLPA-GAGGYVLSAVL 245 (332)
T ss_dssp GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-SCCCC-SCSEEEEESCG
T ss_pred CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCC-CCCCC-CCcEEEEehhh
Confidence 46899999999999999999987 679999999 9999999999999888889999999997 45554 89999999999
Q ss_pred cCcCCH--HHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceE
Q 017428 237 EHMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDI 314 (371)
Q Consensus 237 ~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v 314 (371)
|++++. ..++++++++|+|||+|++.+...+... . .... ....... .. ...++.++|.++|+++||+++
T Consensus 246 h~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~----~-~~~~-d~~~~~~-~~--~~~~t~~e~~~ll~~aGf~~~ 316 (332)
T 3i53_A 246 HDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDEH----A-GTGM-DLRMLTY-FG--GKERSLAELGELAAQAGLAVR 316 (332)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC-------C-CHHH-HHHHHHH-HS--CCCCCHHHHHHHHHHTTEEEE
T ss_pred ccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCCC----c-cHHH-HHHHHhh-CC--CCCCCHHHHHHHHHHCCCEEE
Confidence 999885 8899999999999999999997654431 1 1111 1111111 11 124689999999999999999
Q ss_pred EEEecC
Q 017428 315 KAEDWS 320 (371)
Q Consensus 315 ~~~~~~ 320 (371)
++....
T Consensus 317 ~~~~~~ 322 (332)
T 3i53_A 317 AAHPIS 322 (332)
T ss_dssp EEEECS
T ss_pred EEEECC
Confidence 887654
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-20 Score=165.26 Aligned_cols=153 Identities=20% Similarity=0.308 Sum_probs=112.9
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC---CCC-CCccceEEccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ---PFP-DGQFDLVWSME 234 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~-~~~fD~v~~~~ 234 (371)
+.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++ .++.+...|+.++ ++. +++||+|++..
T Consensus 53 ~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~ 124 (227)
T 3e8s_A 53 PERVLDLGCGEGWLLRALADR-GIEAVGVDGDRTLVDAARAA-------GAGEVHLASYAQLAEAKVPVGKDYDLICANF 124 (227)
T ss_dssp CSEEEEETCTTCHHHHHHHTT-TCEEEEEESCHHHHHHHHHT-------CSSCEEECCHHHHHTTCSCCCCCEEEEEEES
T ss_pred CCEEEEeCCCCCHHHHHHHHC-CCEEEEEcCCHHHHHHHHHh-------cccccchhhHHhhcccccccCCCccEEEECc
Confidence 689999999999999999987 78999999999999999876 3577888888765 433 34599999999
Q ss_pred cccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhcc--CCCCCCCHHHHHHHHHhCCCc
Q 017428 235 SGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAY--YLPAWCSTADYVKLLQSLSLE 312 (371)
Q Consensus 235 ~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ll~~aGF~ 312 (371)
+++ ..++..++++++++|||||++++.++........ .....+....+......+ ....+++.+++.++|+++||+
T Consensus 125 ~l~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~ 202 (227)
T 3e8s_A 125 ALL-HQDIIELLSAMRTLLVPGGALVIQTLHPWSVADG-DYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGLR 202 (227)
T ss_dssp CCC-SSCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTT-CCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTTEE
T ss_pred hhh-hhhHHHHHHHHHHHhCCCeEEEEEecCccccCcc-ccccccchhhhhccccCcccceEEEecHHHHHHHHHHcCCe
Confidence 999 7889999999999999999999998754432211 000000000000000000 001246899999999999999
Q ss_pred eEEEEecCC
Q 017428 313 DIKAEDWSQ 321 (371)
Q Consensus 313 ~v~~~~~~~ 321 (371)
++++.....
T Consensus 203 ~~~~~~~~~ 211 (227)
T 3e8s_A 203 LVSLQEPQH 211 (227)
T ss_dssp EEEEECCCC
T ss_pred EEEEecCCC
Confidence 999886443
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=4.3e-19 Score=160.31 Aligned_cols=161 Identities=16% Similarity=0.161 Sum_probs=124.1
Q ss_pred hHHHHHHHHHHHHhcccchhhHhhhcccccccccCCCCC--cCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECC
Q 017428 90 AAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSS--VSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGC 167 (371)
Q Consensus 90 ~~~~~~~~~i~~~yd~~~~~y~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~ 167 (371)
..++.+.+.+.++|+.....|+..|++.++.+. .+-. .... ......++++.-+..+.+++ +.+||||||
T Consensus 60 ~~~~~l~~~~~~~y~~~~~~~E~~wa~~l~~~~--~p~~~l~~fp-y~~~~~~l~~~E~~la~l~~-----g~rVLDIGc 131 (298)
T 3fpf_A 60 AEMNHALSLIRKFYVNLGMKLEMEKAQEVIESD--SPWETLRSFY-FYPRYLELLKNEAALGRFRR-----GERAVFIGG 131 (298)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS--SHHHHHHTST-THHHHHHHHHHHHHHTTCCT-----TCEEEEECC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--ChHHhhccCC-CcccHHHHHHHHHHHcCCCC-----cCEEEEECC
Confidence 457889999999999999999999998775431 0000 0000 11112333444445566654 899999999
Q ss_pred CcChHHHH-HHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccCcCCHHHHH
Q 017428 168 GIGGSSRY-LAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFV 246 (371)
Q Consensus 168 GtG~~~~~-l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l 246 (371)
|+|.++.. +++..+++|+|+|+|+.|++.|+++++..++ .+++|+++|+.+++ +++||+|++... .++...++
T Consensus 132 G~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~l~--d~~FDvV~~~a~---~~d~~~~l 205 (298)
T 3fpf_A 132 GPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETVID--GLEFDVLMVAAL---AEPKRRVF 205 (298)
T ss_dssp CSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGGGG--GCCCSEEEECTT---CSCHHHHH
T ss_pred CccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhhCC--CCCcCEEEECCC---ccCHHHHH
Confidence 99977644 4443489999999999999999999999888 79999999998865 689999997654 57899999
Q ss_pred HHHHHhcCCCcEEEEEec
Q 017428 247 SELARVTAPAGTIIIVTW 264 (371)
Q Consensus 247 ~~~~~~LkpgG~l~i~~~ 264 (371)
+++.++|||||+|++.+.
T Consensus 206 ~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 206 RNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp HHHHHHCCTTCEEEEEEC
T ss_pred HHHHHHcCCCcEEEEEcC
Confidence 999999999999999763
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=6e-19 Score=166.43 Aligned_cols=166 Identities=22% Similarity=0.270 Sum_probs=130.3
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (371)
....++..+...+ +.+|||||||+|.++..+++.+ +.+++++|+ +.+++.|++++...+++++++++.+|+.+
T Consensus 178 ~~~~l~~~~~~~~-----~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 251 (359)
T 1x19_A 178 AIQLLLEEAKLDG-----VKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYK 251 (359)
T ss_dssp HHHHHHHHCCCTT-----CCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTT
T ss_pred hHHHHHHhcCCCC-----CCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCcccc
Confidence 3456666666544 7899999999999999999987 679999999 99999999999988887789999999998
Q ss_pred CCCCCCccceEEccccccCcCC--HHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHH---hhccCCC
Q 017428 220 QPFPDGQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKI---CDAYYLP 294 (371)
Q Consensus 220 ~~~~~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 294 (371)
.++++ +|+|++..+++++++ ...++++++++|||||++++.++..+... ...+ ...+... .......
T Consensus 252 ~~~~~--~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~--~~~~----~~~~~~~~~~~~g~~~~ 323 (359)
T 1x19_A 252 ESYPE--ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPE--NPNF----DYLSHYILGAGMPFSVL 323 (359)
T ss_dssp SCCCC--CSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCTT--SCCH----HHHHHHGGGGGSSCCCC
T ss_pred CCCCC--CCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCCC--CchH----HHHHHHHHhcCCCCccc
Confidence 77654 399999999999987 78899999999999999999997654321 1111 1111111 1111122
Q ss_pred CCCCHHHHHHHHHhCCCceEEEEecC
Q 017428 295 AWCSTADYVKLLQSLSLEDIKAEDWS 320 (371)
Q Consensus 295 ~~~~~~~~~~ll~~aGF~~v~~~~~~ 320 (371)
.+++.++|.++|+++||+++++....
T Consensus 324 ~~~t~~e~~~ll~~aGf~~v~~~~~~ 349 (359)
T 1x19_A 324 GFKEQARYKEILESLGYKDVTMVRKY 349 (359)
T ss_dssp CCCCGGGHHHHHHHHTCEEEEEEEET
T ss_pred CCCCHHHHHHHHHHCCCceEEEEecC
Confidence 34799999999999999999887654
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.6e-19 Score=165.47 Aligned_cols=148 Identities=16% Similarity=0.232 Sum_probs=108.7
Q ss_pred CCCEEEEECCCcChHHHHHH----HHc-CCE--EEEEeCCHHHHHHHHHHHHHc-CCCCCeEEE--EcCCCCCC------
Q 017428 158 RPKNVVDVGCGIGGSSRYLA----KKF-GAK--CQGITLSPVQAQRANALAAAR-GLADKVSFQ--VGDALQQP------ 221 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~----~~~-~~~--v~gvD~s~~~~~~a~~~~~~~-~~~~~v~~~--~~d~~~~~------ 221 (371)
++.+|||||||+|.++..++ ..+ +.. ++|+|+|+.|++.|++++... ++ +++.+. .+++.+++
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~ 130 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNL-ENVKFAWHKETSSEYQSRMLEK 130 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSC-TTEEEEEECSCHHHHHHHHHTT
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCC-CcceEEEEecchhhhhhhhccc
Confidence 47899999999998765443 333 454 499999999999999998754 33 456554 45544332
Q ss_pred CCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccC---CCCCCC
Q 017428 222 FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYY---LPAWCS 298 (371)
Q Consensus 222 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 298 (371)
+++++||+|++..+++|++|+..++++++++|||||++++....... .+ ..++........ ...+++
T Consensus 131 ~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~---------~~-~~~~~~~~~~~~~~~~~~~~~ 200 (292)
T 2aot_A 131 KELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSS---------GW-DKLWKKYGSRFPQDDLCQYIT 200 (292)
T ss_dssp TCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTTS---------HH-HHHHHHHGGGSCCCTTCCCCC
T ss_pred cCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEEecCCc---------cH-HHHHHHHHHhccCCCcccCCC
Confidence 45789999999999999999999999999999999999998754211 11 122333222221 123678
Q ss_pred HHHHHHHHHhCCCceEEE
Q 017428 299 TADYVKLLQSLSLEDIKA 316 (371)
Q Consensus 299 ~~~~~~ll~~aGF~~v~~ 316 (371)
.+++.++|+++||+++..
T Consensus 201 ~~~~~~~l~~aGf~~~~~ 218 (292)
T 2aot_A 201 SDDLTQMLDNLGLKYECY 218 (292)
T ss_dssp HHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHCCCceEEE
Confidence 999999999999998764
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2e-19 Score=157.48 Aligned_cols=148 Identities=16% Similarity=0.122 Sum_probs=111.9
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCC----CeEEEEcCCCCCCCCCCccceEEcc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLAD----KVSFQVGDALQQPFPDGQFDLVWSM 233 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~----~v~~~~~d~~~~~~~~~~fD~v~~~ 233 (371)
+.+|||||||+|.++..+++.. ..+|+|+|+|+.+++.|++++...+++. ++.+.++|+...+.+.++||+|++.
T Consensus 30 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~ 109 (217)
T 3jwh_A 30 ARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAATVI 109 (217)
T ss_dssp CCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEEEE
T ss_pred CCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEEeeH
Confidence 7899999999999999999875 3699999999999999999988777653 8999999998777777899999999
Q ss_pred ccccCcCCH--HHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHH----HHHH
Q 017428 234 ESGEHMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYV----KLLQ 307 (371)
Q Consensus 234 ~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ll~ 307 (371)
.+++|+++. ..+++++.++|||||.+++...... ...+.... ............++.+++. ++++
T Consensus 110 ~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~-----~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~ 180 (217)
T 3jwh_A 110 EVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEY-----NVKFANLP----AGKLRHKDHRFEWTRSQFQNWANKITE 180 (217)
T ss_dssp SCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHH-----HHHTC---------------CCSCBCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCccc-----chhhcccc----cccccccccccccCHHHHHHHHHHHHH
Confidence 999999865 8999999999999997777653100 00000000 0000001111246899998 8999
Q ss_pred hCCCceEE
Q 017428 308 SLSLEDIK 315 (371)
Q Consensus 308 ~aGF~~v~ 315 (371)
++||+++.
T Consensus 181 ~~Gf~v~~ 188 (217)
T 3jwh_A 181 RFAYNVQF 188 (217)
T ss_dssp HSSEEEEE
T ss_pred HcCceEEE
Confidence 99998654
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-19 Score=152.66 Aligned_cols=133 Identities=23% Similarity=0.325 Sum_probs=112.6
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 238 (371)
+.+|||+|||+|.++..+++.. .+|+|+|+++.+++.++++ .+++.+..+| .++++++||+|++..+++|
T Consensus 18 ~~~vLDiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~------~~~v~~~~~d---~~~~~~~~D~v~~~~~l~~ 87 (170)
T 3i9f_A 18 KGVIVDYGCGNGFYCKYLLEFA-TKLYCIDINVIALKEVKEK------FDSVITLSDP---KEIPDNSVDFILFANSFHD 87 (170)
T ss_dssp CEEEEEETCTTCTTHHHHHTTE-EEEEEECSCHHHHHHHHHH------CTTSEEESSG---GGSCTTCEEEEEEESCSTT
T ss_pred CCeEEEECCCCCHHHHHHHhhc-CeEEEEeCCHHHHHHHHHh------CCCcEEEeCC---CCCCCCceEEEEEccchhc
Confidence 7899999999999999999975 4999999999999999987 2589999999 5667889999999999999
Q ss_pred cCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEEEe
Q 017428 239 MPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAED 318 (371)
Q Consensus 239 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~ 318 (371)
++++..+++++.++|||||++++.++.......... ....++.+++.++|+ ||++++...
T Consensus 88 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~l~--Gf~~~~~~~ 147 (170)
T 3i9f_A 88 MDDKQHVISEVKRILKDDGRVIIIDWRKENTGIGPP------------------LSIRMDEKDYMGWFS--NFVVEKRFN 147 (170)
T ss_dssp CSCHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSC------------------GGGCCCHHHHHHHTT--TEEEEEEEC
T ss_pred ccCHHHHHHHHHHhcCCCCEEEEEEcCccccccCch------------------HhhhcCHHHHHHHHh--CcEEEEccC
Confidence 999999999999999999999999876543221100 012468999999999 999999877
Q ss_pred cCC
Q 017428 319 WSQ 321 (371)
Q Consensus 319 ~~~ 321 (371)
+..
T Consensus 148 ~~~ 150 (170)
T 3i9f_A 148 PTP 150 (170)
T ss_dssp SST
T ss_pred CCC
Confidence 653
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.8e-20 Score=179.05 Aligned_cols=164 Identities=16% Similarity=0.199 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeE-E
Q 017428 134 HRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVS-F 212 (371)
Q Consensus 134 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~-~ 212 (371)
+.....++...++..+.+.+ +.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++ +++.... +
T Consensus 88 ~~~~~~~~~~~l~~~~~~~~-----~~~VLDiGcG~G~~~~~l~~~-g~~v~gvD~s~~~~~~a~~~----~~~~~~~~~ 157 (416)
T 4e2x_A 88 MREHFAMLARDFLATELTGP-----DPFIVEIGCNDGIMLRTIQEA-GVRHLGFEPSSGVAAKAREK----GIRVRTDFF 157 (416)
T ss_dssp HHHHHHHHHHHHHHTTTCSS-----SCEEEEETCTTTTTHHHHHHT-TCEEEEECCCHHHHHHHHTT----TCCEECSCC
T ss_pred HHHHHHHHHHHHHHHhCCCC-----CCEEEEecCCCCHHHHHHHHc-CCcEEEECCCHHHHHHHHHc----CCCcceeee
Confidence 34455667777777776554 889999999999999999986 78999999999999998875 3221111 1
Q ss_pred EEcCCCCCCCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHH-Hhhcc
Q 017428 213 QVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKK-ICDAY 291 (371)
Q Consensus 213 ~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 291 (371)
...+...+++++++||+|++.++++|++++..++++++++|||||++++...... ..... .....
T Consensus 158 ~~~~~~~l~~~~~~fD~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~--------------~~~~~~~~~~~ 223 (416)
T 4e2x_A 158 EKATADDVRRTEGPANVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFEDPYLG--------------DIVAKTSFDQI 223 (416)
T ss_dssp SHHHHHHHHHHHCCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEECHH--------------HHHHHTCGGGC
T ss_pred chhhHhhcccCCCCEEEEEECChHHhcCCHHHHHHHHHHHcCCCeEEEEEeCChH--------------Hhhhhcchhhh
Confidence 2233333455678999999999999999999999999999999999999764311 11111 01111
Q ss_pred --CCCCCCCHHHHHHHHHhCCCceEEEEecCC
Q 017428 292 --YLPAWCSTADYVKLLQSLSLEDIKAEDWSQ 321 (371)
Q Consensus 292 --~~~~~~~~~~~~~ll~~aGF~~v~~~~~~~ 321 (371)
....+++.+++.++++++||+++++..+..
T Consensus 224 ~~~~~~~~s~~~l~~ll~~aGf~~~~~~~~~~ 255 (416)
T 4e2x_A 224 FDEHFFLFSATSVQGMAQRCGFELVDVQRLPV 255 (416)
T ss_dssp STTCCEECCHHHHHHHHHHTTEEEEEEEEECG
T ss_pred hhhhhhcCCHHHHHHHHHHcCCEEEEEEEccC
Confidence 111257999999999999999999988653
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=9.2e-20 Score=167.65 Aligned_cols=174 Identities=13% Similarity=0.103 Sum_probs=124.1
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCC--CCeEEEEcCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLA--DKVSFQVGDAL 218 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~--~~v~~~~~d~~ 218 (371)
.+..++..+... +.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|++++...++. .++.++++|+.
T Consensus 71 ~~~~~~~~~~~~------~~~vLDlGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~ 143 (299)
T 3g2m_A 71 EAREFATRTGPV------SGPVLELAAGMGRLTFPFLDL-GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMS 143 (299)
T ss_dssp HHHHHHHHHCCC------CSCEEEETCTTTTTHHHHHTT-TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTT
T ss_pred HHHHHHHhhCCC------CCcEEEEeccCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchh
Confidence 344555555433 459999999999999999987 789999999999999999998876532 57999999999
Q ss_pred CCCCCCCccceEEcc-ccccCcC--CHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccc-cChHH---HHHHHHHhhc-
Q 017428 219 QQPFPDGQFDLVWSM-ESGEHMP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEES-LQPWE---QELLKKICDA- 290 (371)
Q Consensus 219 ~~~~~~~~fD~v~~~-~~l~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~- 290 (371)
++++ +++||+|++. .++++++ +...++++++++|||||.|++..+........... ...+. ...+ .....
T Consensus 144 ~~~~-~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~ 221 (299)
T 3g2m_A 144 AFAL-DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRY-VLHVRH 221 (299)
T ss_dssp BCCC-SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHSCCCCC--------------CCEEE
T ss_pred cCCc-CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCccccccchhccceeecCCCcEE-EEEEEE
Confidence 9887 6899998865 6677765 35899999999999999999988654321100000 00000 0000 00000
Q ss_pred ------------------------cCCCCCCCHHHHHHHHHhCCCceEEEEecCCcc
Q 017428 291 ------------------------YYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNV 323 (371)
Q Consensus 291 ------------------------~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~~~~ 323 (371)
.....+++.+++.++|+++||+++++..+..+-
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~g 278 (299)
T 3g2m_A 222 LPAEEIQEITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFASGG 278 (299)
T ss_dssp EEEEEEEEEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEECTTS
T ss_pred eccccEEEEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecCCCC
Confidence 000014699999999999999999999887543
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.6e-19 Score=168.18 Aligned_cols=157 Identities=17% Similarity=0.209 Sum_probs=120.7
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--CCCCCccceEEcccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--PFPDGQFDLVWSMES 235 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD~v~~~~~ 235 (371)
..+|||||||+|.++..+++.+ +.+++++|+ +.+++.|++++...++.++++++.+|+.+. |++ ++||+|++..+
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~~~v 257 (363)
T 3dp7_A 180 PKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWMSQF 257 (363)
T ss_dssp CSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEEESC
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCC-CCcCEEEEech
Confidence 6899999999999999999987 789999999 999999999998888777899999999886 466 78999999999
Q ss_pred ccCcCCH--HHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCce
Q 017428 236 GEHMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLED 313 (371)
Q Consensus 236 l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~ 313 (371)
+|++++. ..++++++++|||||+|++.+...+........+. ..................++.++|.++|+++||++
T Consensus 258 lh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~AGf~~ 336 (363)
T 3dp7_A 258 LDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYC-LTQISLYFTAMANGNSKMFHSDDLIRCIENAGLEV 336 (363)
T ss_dssp STTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHH-HHHHHHHHHHSSCSSCCSCCHHHHHHHHHTTTEEE
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhH-HHHhhhhHHhhhCCCCcccCHHHHHHHHHHcCCeE
Confidence 9999765 57899999999999999999975543221100000 00000000011111123569999999999999998
Q ss_pred EEEEe
Q 017428 314 IKAED 318 (371)
Q Consensus 314 v~~~~ 318 (371)
+++..
T Consensus 337 v~~~~ 341 (363)
T 3dp7_A 337 EEIQD 341 (363)
T ss_dssp SCCCC
T ss_pred EEEEe
Confidence 87653
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-18 Score=162.20 Aligned_cols=168 Identities=14% Similarity=0.185 Sum_probs=129.2
Q ss_pred HHHHHHHcCC--CCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 017428 142 IEETLRFAGV--SEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (371)
Q Consensus 142 ~~~~l~~~~~--~~~~~~~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (371)
...++..+.. .+ +.+|||+|||+|.++..+++.+ +.+++++|++ .+++.|++++...++.+++++..+|+.
T Consensus 152 ~~~~~~~~~~~~~~-----~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~ 225 (335)
T 2r3s_A 152 AQLIAQLVNENKIE-----PLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAF 225 (335)
T ss_dssp HHHHHHHHTC--CC-----CSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTT
T ss_pred HHHHHHhcccccCC-----CCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccc
Confidence 4455665554 43 7899999999999999999987 6799999999 999999999988888778999999998
Q ss_pred CCCCCCCccceEEccccccCcCCH--HHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHh-hccCCCC
Q 017428 219 QQPFPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKIC-DAYYLPA 295 (371)
Q Consensus 219 ~~~~~~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 295 (371)
+.+++.+ ||+|++.++++|+++. ..++++++++|+|||++++.++..+..... ......+.... .......
T Consensus 226 ~~~~~~~-~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 299 (335)
T 2r3s_A 226 EVDYGND-YDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRIT-----PPDAAAFSLVMLATTPNGD 299 (335)
T ss_dssp TSCCCSC-EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSC-----SHHHHHHHHHHHHHSSSCC
T ss_pred cCCCCCC-CcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCC-----chHHHHHHHHHHeeCCCCC
Confidence 8776544 9999999999999554 799999999999999999999765432111 11111111110 0011123
Q ss_pred CCCHHHHHHHHHhCCCceEEEEecCC
Q 017428 296 WCSTADYVKLLQSLSLEDIKAEDWSQ 321 (371)
Q Consensus 296 ~~~~~~~~~ll~~aGF~~v~~~~~~~ 321 (371)
.++.++|.++|+++||+++++.....
T Consensus 300 ~~t~~~~~~ll~~aGf~~~~~~~~~~ 325 (335)
T 2r3s_A 300 AYTFAEYESMFSNAGFSHSQLHSLPT 325 (335)
T ss_dssp CCCHHHHHHHHHHTTCSEEEEECCTT
T ss_pred cCCHHHHHHHHHHCCCCeeeEEECCC
Confidence 57999999999999999999876543
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2.3e-19 Score=157.32 Aligned_cols=149 Identities=17% Similarity=0.152 Sum_probs=113.0
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCC----CeEEEEcCCCCCCCCCCccceEEcc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLAD----KVSFQVGDALQQPFPDGQFDLVWSM 233 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~----~v~~~~~d~~~~~~~~~~fD~v~~~ 233 (371)
+.+|||||||+|.++..+++.. ..+|+|+|+|+.+++.|++++...+++. ++.++.+|+...+.++++||+|++.
T Consensus 30 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~ 109 (219)
T 3jwg_A 30 AKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAATVI 109 (219)
T ss_dssp CCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEEEE
T ss_pred CCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEEEH
Confidence 7899999999999999999875 3799999999999999999987776654 8999999998877777899999999
Q ss_pred ccccCcCCH--HHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHH----HHHH
Q 017428 234 ESGEHMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYV----KLLQ 307 (371)
Q Consensus 234 ~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ll~ 307 (371)
.+++|+++. ..+++++.++|||||.+++....... ..+.......+ ........++.+++. ++++
T Consensus 110 ~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~-----~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~l~~ 180 (219)
T 3jwg_A 110 EVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYN-----FHYGNLFEGNL----RHRDHRFEWTRKEFQTWAVKVAE 180 (219)
T ss_dssp SCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBGGGG-----GCCCCT---------GGGCCTTSBCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccchhhh-----hhhcccCcccc----cccCceeeecHHHHHHHHHHHHH
Confidence 999999865 79999999999999966665432110 00100000000 011111246889988 8899
Q ss_pred hCCCceEEE
Q 017428 308 SLSLEDIKA 316 (371)
Q Consensus 308 ~aGF~~v~~ 316 (371)
++||++...
T Consensus 181 ~~Gf~v~~~ 189 (219)
T 3jwg_A 181 KYGYSVRFL 189 (219)
T ss_dssp HHTEEEEEE
T ss_pred HCCcEEEEE
Confidence 999976544
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.80 E-value=6.8e-19 Score=154.39 Aligned_cols=138 Identities=21% Similarity=0.224 Sum_probs=110.8
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 238 (371)
+.+|||||||+|.++..++.. +|+|+|+.+++.++++ ++.+..+|+.++++++++||+|++..+++|
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 114 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKR--------GVFVLKGTAENLPLKDESFDFALMVTTICF 114 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHT--------TCEEEECBTTBCCSCTTCEEEEEEESCGGG
T ss_pred CCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhc--------CCEEEEcccccCCCCCCCeeEEEEcchHhh
Confidence 679999999999999887653 9999999999999874 588999999998888889999999999999
Q ss_pred cCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhc---cCCCCCCCHHHHHHHHHhCCCceEE
Q 017428 239 MPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDA---YYLPAWCSTADYVKLLQSLSLEDIK 315 (371)
Q Consensus 239 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ll~~aGF~~v~ 315 (371)
++++..+++++.++|+|||.+++.+..... .+ ...+...... +....+++.+++.++|+++||++++
T Consensus 115 ~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~---------~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~ 184 (219)
T 1vlm_A 115 VDDPERALKEAYRILKKGGYLIVGIVDRES---------FL-GREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFK 184 (219)
T ss_dssp SSCHHHHHHHHHHHEEEEEEEEEEEECSSS---------HH-HHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEE
T ss_pred ccCHHHHHHHHHHHcCCCcEEEEEEeCCcc---------HH-HHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEE
Confidence 999999999999999999999998764321 11 1111111111 1112357999999999999999988
Q ss_pred EEec
Q 017428 316 AEDW 319 (371)
Q Consensus 316 ~~~~ 319 (371)
+...
T Consensus 185 ~~~~ 188 (219)
T 1vlm_A 185 VVQT 188 (219)
T ss_dssp EEEE
T ss_pred Eecc
Confidence 7654
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.80 E-value=1e-18 Score=152.11 Aligned_cols=131 Identities=21% Similarity=0.334 Sum_probs=105.9
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l 236 (371)
++.+|||+|||+|.++..+ +. +|+|+|+|+.+++.++++. +++.++.+|+.++++++++||+|++..++
T Consensus 36 ~~~~vLdiG~G~G~~~~~l----~~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 105 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL----PYPQKVGVEPSEAMLAVGRRRA------PEATWVRAWGEALPFPGESFDVVLLFTTL 105 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC----CCSEEEEECCCHHHHHHHHHHC------TTSEEECCCTTSCCSCSSCEEEEEEESCT
T ss_pred CCCeEEEECCCCCHhHHhC----CCCeEEEEeCCHHHHHHHHHhC------CCcEEEEcccccCCCCCCcEEEEEEcChh
Confidence 3789999999999998877 55 9999999999999998875 47899999999998888999999999999
Q ss_pred cCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHH-hh---ccCCCCCCCHHHHHHHHHhCC
Q 017428 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKI-CD---AYYLPAWCSTADYVKLLQSLS 310 (371)
Q Consensus 237 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~ll~~aG 310 (371)
+|++++..+++++.++|||||.+++.++.... .+. ...... .. .+....+++.+++.++|+ |
T Consensus 106 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~---------~~~-~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~--G 171 (211)
T 2gs9_A 106 EFVEDVERVLLEARRVLRPGGALVVGVLEALS---------PWA-ALYRRLGEKGVLPWAQARFLAREDLKALLG--P 171 (211)
T ss_dssp TTCSCHHHHHHHHHHHEEEEEEEEEEEECTTS---------HHH-HHHHHHHHTTCTTGGGCCCCCHHHHHHHHC--S
T ss_pred hhcCCHHHHHHHHHHHcCCCCEEEEEecCCcC---------cHH-HHHHHHhhccCccccccccCCHHHHHHHhc--C
Confidence 99999999999999999999999998865321 111 111111 11 111224689999999999 7
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=6e-19 Score=159.04 Aligned_cols=100 Identities=23% Similarity=0.348 Sum_probs=89.4
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccc-ccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSME-SGE 237 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~-~l~ 237 (371)
+.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++. .++.++++|+.++++ +++||+|++.. +++
T Consensus 51 ~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~-~~~fD~v~~~~~~l~ 122 (263)
T 3pfg_A 51 AASLLDVACGTGMHLRHLADS-FGTVEGLELSADMLAIARRRN------PDAVLHHGDMRDFSL-GRRFSAVTCMFSSIG 122 (263)
T ss_dssp CCEEEEETCTTSHHHHHHTTT-SSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTTCCC-SCCEEEEEECTTGGG
T ss_pred CCcEEEeCCcCCHHHHHHHHc-CCeEEEEECCHHHHHHHHhhC------CCCEEEECChHHCCc-cCCcCEEEEcCchhh
Confidence 689999999999999999887 679999999999999999874 379999999999877 68999999998 999
Q ss_pred CcC---CHHHHHHHHHHhcCCCcEEEEEeccC
Q 017428 238 HMP---DKSKFVSELARVTAPAGTIIIVTWCH 266 (371)
Q Consensus 238 ~~~---~~~~~l~~~~~~LkpgG~l~i~~~~~ 266 (371)
|+. +...++++++++|||||.+++..+..
T Consensus 123 ~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 154 (263)
T 3pfg_A 123 HLAGQAELDAALERFAAHVLPDGVVVVEPWWF 154 (263)
T ss_dssp GSCHHHHHHHHHHHHHHTEEEEEEEEECCCCC
T ss_pred hcCCHHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 996 55688999999999999999976543
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.9e-18 Score=153.53 Aligned_cols=154 Identities=19% Similarity=0.327 Sum_probs=116.5
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l 236 (371)
++.+|||||||+|.++..+++. +. +|+|+|+|+.+++.++++... .++.+..+|+.++++++++||+|++..++
T Consensus 43 ~~~~vLdiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 117 (243)
T 3bkw_A 43 GGLRIVDLGCGFGWFCRWAHEH-GASYVLGLDLSEKMLARARAAGPD----TGITYERADLDKLHLPQDSFDLAYSSLAL 117 (243)
T ss_dssp TTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTSCS----SSEEEEECCGGGCCCCTTCEEEEEEESCG
T ss_pred CCCEEEEEcCcCCHHHHHHHHC-CCCeEEEEcCCHHHHHHHHHhccc----CCceEEEcChhhccCCCCCceEEEEeccc
Confidence 3789999999999999999887 66 999999999999999886532 36999999999888878999999999999
Q ss_pred cCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCcc------------ccChH------HHHHHHHHhhccCCCCCCC
Q 017428 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEE------------SLQPW------EQELLKKICDAYYLPAWCS 298 (371)
Q Consensus 237 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~------------~~~~~------~~~~~~~~~~~~~~~~~~~ 298 (371)
+|+++...+++++.++|+|||.+++............. ..... ...++. .... ...++
T Consensus 118 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~t 193 (243)
T 3bkw_A 118 HYVEDVARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLA---KGVV-KHHRT 193 (243)
T ss_dssp GGCSCHHHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHH---HSCC-EEECC
T ss_pred cccchHHHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeecc---CceE-EEecc
Confidence 99999999999999999999999998743110000000 00000 000011 0111 11258
Q ss_pred HHHHHHHHHhCCCceEEEEecC
Q 017428 299 TADYVKLLQSLSLEDIKAEDWS 320 (371)
Q Consensus 299 ~~~~~~ll~~aGF~~v~~~~~~ 320 (371)
.+++.++|+++||+++++....
T Consensus 194 ~~~~~~~l~~aGF~~~~~~~~~ 215 (243)
T 3bkw_A 194 VGTTLNALIRSGFAIEHVEEFC 215 (243)
T ss_dssp HHHHHHHHHHTTCEEEEEEECC
T ss_pred HHHHHHHHHHcCCEeeeeccCC
Confidence 9999999999999999987653
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.79 E-value=4.8e-20 Score=166.46 Aligned_cols=148 Identities=9% Similarity=-0.026 Sum_probs=109.6
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCC----------------------------CCC
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGL----------------------------ADK 209 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~----------------------------~~~ 209 (371)
++.+|||||||+|.++..++.....+|+|+|+|+.|++.|+++++.... ..+
T Consensus 55 ~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (263)
T 2a14_A 55 QGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAA 134 (263)
T ss_dssp CEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred CCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHhh
Confidence 4789999999999887776665223799999999999999987654310 012
Q ss_pred eE-EEEcCCCCC-CC---CCCccceEEccccccCc----CCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHH
Q 017428 210 VS-FQVGDALQQ-PF---PDGQFDLVWSMESGEHM----PDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWE 280 (371)
Q Consensus 210 v~-~~~~d~~~~-~~---~~~~fD~v~~~~~l~~~----~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~ 280 (371)
+. ++++|+.+. |+ ..++||+|++..+++|+ ++...++++++++|||||.|++.......... .
T Consensus 135 i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~----~---- 206 (263)
T 2a14_A 135 VKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYM----V---- 206 (263)
T ss_dssp EEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEE----E----
T ss_pred hheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccce----e----
Confidence 43 889999874 43 25789999999999986 34578999999999999999998754321100 0
Q ss_pred HHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEEEecC
Q 017428 281 QELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWS 320 (371)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~ 320 (371)
....+. ...++.+++.++|+++||+++++..+.
T Consensus 207 ------g~~~~~-~~~~~~~~l~~~l~~aGF~i~~~~~~~ 239 (263)
T 2a14_A 207 ------GKREFS-CVALEKGEVEQAVLDAGFDIEQLLHSP 239 (263)
T ss_dssp ------TTEEEE-CCCCCHHHHHHHHHHTTEEEEEEEEEC
T ss_pred ------CCeEee-ccccCHHHHHHHHHHCCCEEEEEeecc
Confidence 000111 124689999999999999999988765
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-18 Score=155.29 Aligned_cols=103 Identities=20% Similarity=0.248 Sum_probs=93.1
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccc-cc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSME-SG 236 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~-~l 236 (371)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++....+. ++.+.++|+.+.+++ ++||+|++.. ++
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~-~~~~~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~-~~fD~v~~~~~~l 112 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPK-FKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLNIN-RKFDLITCCLDST 112 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG-SSEEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCCCS-CCEEEEEECTTGG
T ss_pred CCCeEEEeCCCCCHHHHHHHHC-CCcEEEEECCHHHHHHHHHHHhhcCC--CeEEEecccccCCcc-CCceEEEEcCccc
Confidence 3789999999999999999887 78999999999999999999887764 799999999988876 8899999998 99
Q ss_pred cCc---CCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 237 EHM---PDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 237 ~~~---~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
+|+ .+...+++++.++|||||.+++...
T Consensus 113 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 143 (246)
T 1y8c_A 113 NYIIDSDDLKKYFKAVSNHLKEGGVFIFDIN 143 (246)
T ss_dssp GGCCSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 999 5678999999999999999998553
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.9e-18 Score=148.68 Aligned_cols=139 Identities=22% Similarity=0.338 Sum_probs=115.9
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 238 (371)
+.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+++++...++ +++.+..+|+.+.++ +++||+|++..+++|
T Consensus 33 ~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~-~~~~D~v~~~~~l~~ 109 (199)
T 2xvm_A 33 PGKTLDLGCGNGRNSLYLAAN-GYDVDAWDKNAMSIANVERIKSIENL-DNLHTRVVDLNNLTF-DRQYDFILSTVVLMF 109 (199)
T ss_dssp SCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTC-TTEEEEECCGGGCCC-CCCEEEEEEESCGGG
T ss_pred CCeEEEEcCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHhCCC-CCcEEEEcchhhCCC-CCCceEEEEcchhhh
Confidence 779999999999999999987 78999999999999999999988876 469999999998877 789999999999999
Q ss_pred cC--CHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEE
Q 017428 239 MP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKA 316 (371)
Q Consensus 239 ~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~ 316 (371)
++ +...+++++.++|||||.+++.+.......+. .......++.+++.++|++ |++++.
T Consensus 110 ~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~-----------------~~~~~~~~~~~~l~~~~~~--f~~~~~ 170 (199)
T 2xvm_A 110 LEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPC-----------------TVGFPFAFKEGELRRYYEG--WERVKY 170 (199)
T ss_dssp SCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCC-----------------CSCCSCCBCTTHHHHHTTT--SEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCC-----------------CCCCCCccCHHHHHHHhcC--CeEEEe
Confidence 97 78999999999999999998877543322110 0111224688999999987 998887
Q ss_pred Eec
Q 017428 317 EDW 319 (371)
Q Consensus 317 ~~~ 319 (371)
...
T Consensus 171 ~~~ 173 (199)
T 2xvm_A 171 NED 173 (199)
T ss_dssp ECC
T ss_pred ccc
Confidence 644
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=3.3e-18 Score=162.21 Aligned_cols=165 Identities=23% Similarity=0.236 Sum_probs=124.0
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC
Q 017428 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP 221 (371)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 221 (371)
..++..+.+. ++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.|++++...++.++++++.+|+.+ +
T Consensus 172 ~~~~~~~~~~-----~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~ 244 (374)
T 1qzz_A 172 EAPADAYDWS-----AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-P 244 (374)
T ss_dssp HHHHHTSCCT-----TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-C
T ss_pred HHHHHhCCCC-----CCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-c
Confidence 3445555444 37899999999999999999987 679999999 99999999999988887799999999976 4
Q ss_pred CCCCccceEEccccccCcCCHH--HHHHHHHHhcCCCcEEEEEec--cCCCCCcCccccChHHHHHHHHHhhccCCCCCC
Q 017428 222 FPDGQFDLVWSMESGEHMPDKS--KFVSELARVTAPAGTIIIVTW--CHRDLAPSEESLQPWEQELLKKICDAYYLPAWC 297 (371)
Q Consensus 222 ~~~~~fD~v~~~~~l~~~~~~~--~~l~~~~~~LkpgG~l~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (371)
++. .||+|++..+++|+++.. .++++++++|||||++++.+. ..+... . ......+............+
T Consensus 245 ~~~-~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~ 317 (374)
T 1qzz_A 245 LPV-TADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGA--D----RFFSTLLDLRMLTFMGGRVR 317 (374)
T ss_dssp CSC-CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------------HHHHHHHHHHHHHHHSCCCC
T ss_pred CCC-CCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCC--C----cchhhhcchHHHHhCCCcCC
Confidence 443 499999999999998764 899999999999999999987 432211 0 11111111110000011357
Q ss_pred CHHHHHHHHHhCCCceEEEEecCC
Q 017428 298 STADYVKLLQSLSLEDIKAEDWSQ 321 (371)
Q Consensus 298 ~~~~~~~ll~~aGF~~v~~~~~~~ 321 (371)
+.++|.++|+++||+++++.....
T Consensus 318 ~~~~~~~ll~~aGf~~~~~~~~~~ 341 (374)
T 1qzz_A 318 TRDEVVDLAGSAGLALASERTSGS 341 (374)
T ss_dssp CHHHHHHHHHTTTEEEEEEEEECC
T ss_pred CHHHHHHHHHHCCCceEEEEECCC
Confidence 999999999999999998877643
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-18 Score=156.21 Aligned_cols=143 Identities=13% Similarity=0.195 Sum_probs=112.0
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHH----------c------CCCCCeEEEEcCCCCCC
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAA----------R------GLADKVSFQVGDALQQP 221 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~----------~------~~~~~v~~~~~d~~~~~ 221 (371)
++.+|||+|||+|..+..|++. |.+|+|||+|+.|++.|+++... . ....+++++++|+.+++
T Consensus 68 ~~~~vLD~GCG~G~~~~~La~~-G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~ 146 (252)
T 2gb4_A 68 SGLRVFFPLCGKAIEMKWFADR-GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLP 146 (252)
T ss_dssp CSCEEEETTCTTCTHHHHHHHT-TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGG
T ss_pred CCCeEEEeCCCCcHHHHHHHHC-CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccCC
Confidence 3789999999999999999987 88999999999999999876531 0 01257999999999987
Q ss_pred CCC-CccceEEccccccCcC--CHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCC
Q 017428 222 FPD-GQFDLVWSMESGEHMP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCS 298 (371)
Q Consensus 222 ~~~-~~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (371)
+++ ++||+|++..++++++ +...+++++.++|||||++++..+...... ..+.+...+
T Consensus 147 ~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~-------------------~~g~~~~~~ 207 (252)
T 2gb4_A 147 RANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTK-------------------HAGPPFYVP 207 (252)
T ss_dssp GGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTS-------------------CCCSSCCCC
T ss_pred cccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCcc-------------------CCCCCCCCC
Confidence 654 8999999999999985 457899999999999999987665432110 001111368
Q ss_pred HHHHHHHHHhCCCceEEEEecCC
Q 017428 299 TADYVKLLQSLSLEDIKAEDWSQ 321 (371)
Q Consensus 299 ~~~~~~ll~~aGF~~v~~~~~~~ 321 (371)
++++.+++.. +|+++..+.+..
T Consensus 208 ~~el~~~l~~-~f~v~~~~~~~~ 229 (252)
T 2gb4_A 208 SAELKRLFGT-KCSMQCLEEVDA 229 (252)
T ss_dssp HHHHHHHHTT-TEEEEEEEEEEC
T ss_pred HHHHHHHhhC-CeEEEEEecccc
Confidence 9999999988 599888775443
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.78 E-value=8.6e-19 Score=154.19 Aligned_cols=104 Identities=31% Similarity=0.457 Sum_probs=93.8
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccc--c
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES--G 236 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~--l 236 (371)
+.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++....+ .+++++.+|+.+.++++++||+|++..+ +
T Consensus 39 ~~~vLDlG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~ 115 (227)
T 1ve3_A 39 RGKVLDLACGVGGFSFLLEDY-GFEVVGVDISEDMIRKAREYAKSRE--SNVEFIVGDARKLSFEDKTFDYVIFIDSIVH 115 (227)
T ss_dssp CCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCTTSCCSCTTCEEEEEEESCGGG
T ss_pred CCeEEEEeccCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcC--CCceEEECchhcCCCCCCcEEEEEEcCchHh
Confidence 689999999999999999887 5699999999999999999988776 5899999999998877889999999998 6
Q ss_pred cCcCCHHHHHHHHHHhcCCCcEEEEEecc
Q 017428 237 EHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 237 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
++..+...+++++.++|+|||.+++.+..
T Consensus 116 ~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 116 FEPLELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp CCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 66667889999999999999999998754
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.5e-18 Score=150.35 Aligned_cols=146 Identities=18% Similarity=0.249 Sum_probs=116.2
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC--CCCCCCccceEEcccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ--QPFPDGQFDLVWSMES 235 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~fD~v~~~~~ 235 (371)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++. ..+..+|+.+ .++++++||+|++..+
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~-~~~~~~~D~~~~~~~~~~~~~--------~~~~~~d~~~~~~~~~~~~fD~v~~~~~ 102 (230)
T 3cc8_A 32 EWKEVLDIGCSSGALGAAIKEN-GTRVSGIEAFPEAAEQAKEKL--------DHVVLGDIETMDMPYEEEQFDCVIFGDV 102 (230)
T ss_dssp TCSEEEEETCTTSHHHHHHHTT-TCEEEEEESSHHHHHHHHTTS--------SEEEESCTTTCCCCSCTTCEEEEEEESC
T ss_pred CCCcEEEeCCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHhC--------CcEEEcchhhcCCCCCCCccCEEEECCh
Confidence 4789999999999999999988 789999999999999988642 4788999887 5677789999999999
Q ss_pred ccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccC----------CCCCCCHHHHHHH
Q 017428 236 GEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYY----------LPAWCSTADYVKL 305 (371)
Q Consensus 236 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~l 305 (371)
++|++++..+++++.++|+|||.+++........ ..........+. ...+++.+++.++
T Consensus 103 l~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (230)
T 3cc8_A 103 LEHLFDPWAVIEKVKPYIKQNGVILASIPNVSHI-----------SVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRM 171 (230)
T ss_dssp GGGSSCHHHHHHHTGGGEEEEEEEEEEEECTTSH-----------HHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHH
T ss_pred hhhcCCHHHHHHHHHHHcCCCCEEEEEeCCcchH-----------HHHHHHhcCCceeccCCCCCcceEEEecHHHHHHH
Confidence 9999999999999999999999999987543211 011111111111 1135799999999
Q ss_pred HHhCCCceEEEEecCCcc
Q 017428 306 LQSLSLEDIKAEDWSQNV 323 (371)
Q Consensus 306 l~~aGF~~v~~~~~~~~~ 323 (371)
|+++||+++++.......
T Consensus 172 l~~~Gf~~~~~~~~~~~~ 189 (230)
T 3cc8_A 172 FLKAGYSISKVDRVYVDH 189 (230)
T ss_dssp HHHTTEEEEEEEEEECCC
T ss_pred HHHcCCeEEEEEecccCh
Confidence 999999999988766554
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=3e-19 Score=163.71 Aligned_cols=152 Identities=14% Similarity=0.252 Sum_probs=111.7
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcC-------------------------------
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARG------------------------------- 205 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~------------------------------- 205 (371)
++.+|||||||+|.++..+++.+ +.+|+|+|+|+.+++.|++++...+
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC 125 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence 37899999999999999999987 6899999999999999999866543
Q ss_pred --------------------------CCCCeEEEEcCCCCCC-----CCCCccceEEccccccCcC------CHHHHHHH
Q 017428 206 --------------------------LADKVSFQVGDALQQP-----FPDGQFDLVWSMESGEHMP------DKSKFVSE 248 (371)
Q Consensus 206 --------------------------~~~~v~~~~~d~~~~~-----~~~~~fD~v~~~~~l~~~~------~~~~~l~~ 248 (371)
.+.++.|.++|+...+ +..++||+|++..+++|+. +...++++
T Consensus 126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~ 205 (292)
T 3g07_A 126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR 205 (292)
T ss_dssp ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence 2258999999998654 4678999999999997775 67899999
Q ss_pred HHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHh--CCCceEEEEe
Q 017428 249 LARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQS--LSLEDIKAED 318 (371)
Q Consensus 249 ~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~--aGF~~v~~~~ 318 (371)
++++|||||+|++.......... ...+... ... ..... .+.++++.++|.+ +||+.+++..
T Consensus 206 ~~~~LkpGG~lil~~~~~~~y~~-~~~~~~~---~~~-~~~~~----~~~p~~~~~~L~~~~~GF~~~~~~~ 268 (292)
T 3g07_A 206 IYRHLRPGGILVLEPQPWSSYGK-RKTLTET---IYK-NYYRI----QLKPEQFSSYLTSPDVGFSSYELVA 268 (292)
T ss_dssp HHHHEEEEEEEEEECCCHHHHHT-TTTSCHH---HHH-HHHHC----CCCGGGHHHHHTSTTTCCCEEEEC-
T ss_pred HHHHhCCCcEEEEecCCchhhhh-hhcccHH---HHh-hhhcE----EEcHHHHHHHHHhcCCCceEEEEec
Confidence 99999999999996532111100 0111111 111 11111 2357899999999 9999887654
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.3e-18 Score=160.69 Aligned_cols=160 Identities=15% Similarity=0.104 Sum_probs=118.0
Q ss_pred HHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 017428 142 IEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (371)
Q Consensus 142 ~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (371)
...++..+.+++ +.+|||||||+|.++..+++.+ +.+++++|++ .++. +++.+..++.++++++.+|+. .
T Consensus 173 ~~~~~~~~~~~~-----~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~--~~~~~~~~~~~~v~~~~~d~~-~ 243 (348)
T 3lst_A 173 HLILARAGDFPA-----TGTVADVGGGRGGFLLTVLREHPGLQGVLLDRA-EVVA--RHRLDAPDVAGRWKVVEGDFL-R 243 (348)
T ss_dssp HHHHHHHSCCCS-----SEEEEEETCTTSHHHHHHHHHCTTEEEEEEECH-HHHT--TCCCCCGGGTTSEEEEECCTT-T
T ss_pred HHHHHHhCCccC-----CceEEEECCccCHHHHHHHHHCCCCEEEEecCH-HHhh--cccccccCCCCCeEEEecCCC-C
Confidence 445666666554 7899999999999999999987 6789999994 4444 333333345578999999997 3
Q ss_pred CCCCCccceEEccccccCcCCH--HHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCC
Q 017428 221 PFPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCS 298 (371)
Q Consensus 221 ~~~~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (371)
+++ +||+|++..++||+++. ..++++++++|||||+|++.+...+.... ... ...+............++
T Consensus 244 ~~p--~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~--~~~----~~~~d~~~~~~~~~~~~t 315 (348)
T 3lst_A 244 EVP--HADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGND--AHQ----SKEMDFMMLAARTGQERT 315 (348)
T ss_dssp CCC--CCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSS--CCH----HHHHHHHHHHTTSCCCCB
T ss_pred CCC--CCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCC--cch----hhhcChhhhhcCCCcCCC
Confidence 445 89999999999999887 69999999999999999999876543311 111 111111111111123568
Q ss_pred HHHHHHHHHhCCCceEEEEe
Q 017428 299 TADYVKLLQSLSLEDIKAED 318 (371)
Q Consensus 299 ~~~~~~ll~~aGF~~v~~~~ 318 (371)
.++|.++|+++||+++++..
T Consensus 316 ~~e~~~ll~~aGf~~~~~~~ 335 (348)
T 3lst_A 316 AAELEPLFTAAGLRLDRVVG 335 (348)
T ss_dssp HHHHHHHHHHTTEEEEEEEE
T ss_pred HHHHHHHHHHCCCceEEEEE
Confidence 99999999999999999876
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.78 E-value=9.6e-19 Score=160.02 Aligned_cols=149 Identities=12% Similarity=0.039 Sum_probs=109.3
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc-----------------CCCC------------
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR-----------------GLAD------------ 208 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~-----------------~~~~------------ 208 (371)
++.+|||||||+|..+..++...+.+|+|+|+|+.|++.|+++++.. +...
T Consensus 71 ~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 150 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRAR 150 (289)
T ss_dssp CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhh
Confidence 37899999999999655444433679999999999999998865421 1000
Q ss_pred CeEEEEcCCCC-CCC-----CCCccceEEccccccC----cCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccCh
Q 017428 209 KVSFQVGDALQ-QPF-----PDGQFDLVWSMESGEH----MPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQP 278 (371)
Q Consensus 209 ~v~~~~~d~~~-~~~-----~~~~fD~v~~~~~l~~----~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~ 278 (371)
.+.++.+|+.+ +|+ ++++||+|+++.+++| ++++..++++++++|||||+|++.......... .
T Consensus 151 ~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~----~-- 224 (289)
T 2g72_A 151 VKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYL----A-- 224 (289)
T ss_dssp EEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEE----E--
T ss_pred hceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEE----c--
Confidence 15677889887 553 4567999999999999 567899999999999999999998633211100 0
Q ss_pred HHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEEEecCC
Q 017428 279 WEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQ 321 (371)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~~ 321 (371)
....+. ..+++.+++.++|+++||+++.+..+..
T Consensus 225 --------~~~~~~-~~~~~~~~l~~~l~~aGf~~~~~~~~~~ 258 (289)
T 2g72_A 225 --------GEARLT-VVPVSEEEVREALVRSGYKVRDLRTYIM 258 (289)
T ss_dssp --------TTEEEE-CCCCCHHHHHHHHHHTTEEEEEEEEEEC
T ss_pred --------CCeeee-eccCCHHHHHHHHHHcCCeEEEeeEeec
Confidence 000111 1257999999999999999999877664
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.78 E-value=3.3e-18 Score=147.83 Aligned_cols=145 Identities=16% Similarity=0.182 Sum_probs=115.0
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 238 (371)
+ +|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++....+. ++.+..+|+.+.++++++||+|++.....+
T Consensus 31 ~-~vLdiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~ 106 (202)
T 2kw5_A 31 G-KILCLAEGEGRNACFLASL-GYEVTAVDQSSVGLAKAKQLAQEKGV--KITTVQSNLADFDIVADAWEGIVSIFCHLP 106 (202)
T ss_dssp S-EEEECCCSCTHHHHHHHTT-TCEEEEECSSHHHHHHHHHHHHHHTC--CEEEECCBTTTBSCCTTTCSEEEEECCCCC
T ss_pred C-CEEEECCCCCHhHHHHHhC-CCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcChhhcCCCcCCccEEEEEhhcCC
Confidence 5 9999999999999999886 78999999999999999999888764 799999999998888889999998543222
Q ss_pred cCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEEEe
Q 017428 239 MPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAED 318 (371)
Q Consensus 239 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~ 318 (371)
..+...+++++.++|||||.+++.++........ .........+++.+++.++|+ ||+++.+..
T Consensus 107 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~l~~~l~--Gf~v~~~~~ 170 (202)
T 2kw5_A 107 SSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYN--------------TGGPKDLDLLPKLETLQSELP--SLNWLIANN 170 (202)
T ss_dssp HHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGT--------------SCCSSSGGGCCCHHHHHHHCS--SSCEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEeccccccCC--------------CCCCCcceeecCHHHHHHHhc--CceEEEEEE
Confidence 2467899999999999999999998754332100 000001112579999999999 999999877
Q ss_pred cCCcc
Q 017428 319 WSQNV 323 (371)
Q Consensus 319 ~~~~~ 323 (371)
...+.
T Consensus 171 ~~~~~ 175 (202)
T 2kw5_A 171 LERNL 175 (202)
T ss_dssp EEEEC
T ss_pred EEeec
Confidence 66553
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.5e-18 Score=159.96 Aligned_cols=152 Identities=17% Similarity=0.170 Sum_probs=120.0
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-CCCCccceEEccccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-FPDGQFDLVWSMESG 236 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~v~~~~~l 236 (371)
+.+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++++...++.+++++..+|+.+.+ +..+.||+|++..++
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~vl 258 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDCL 258 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEESCG
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEeccc
Confidence 7899999999999999999987 679999999 8899999999998888778999999998865 134669999999999
Q ss_pred cCcCCH--HHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHh-hccCCCCCCCHHHHHHHHHhCCCce
Q 017428 237 EHMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKIC-DAYYLPAWCSTADYVKLLQSLSLED 313 (371)
Q Consensus 237 ~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ll~~aGF~~ 313 (371)
||+++. ..++++++++|+|||+|++.+...+..... .....++.... ........++.++|.++|+++||++
T Consensus 259 h~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 333 (352)
T 3mcz_A 259 HYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVT-----PALSADFSLHMMVNTNHGELHPTPWIAGVVRDAGLAV 333 (352)
T ss_dssp GGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSS-----SHHHHHHHHHHHHHSTTCCCCCHHHHHHHHHHTTCEE
T ss_pred ccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCC-----CchHHHhhHHHHhhCCCCCcCCHHHHHHHHHHCCCce
Confidence 999865 899999999999999999999765443211 11111111111 0111112468999999999999999
Q ss_pred EEE
Q 017428 314 IKA 316 (371)
Q Consensus 314 v~~ 316 (371)
++.
T Consensus 334 ~~~ 336 (352)
T 3mcz_A 334 GER 336 (352)
T ss_dssp EEE
T ss_pred eee
Confidence 884
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.77 E-value=8.7e-18 Score=156.87 Aligned_cols=163 Identities=16% Similarity=0.150 Sum_probs=124.3
Q ss_pred HHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 017428 142 IEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (371)
Q Consensus 142 ~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (371)
...++..+... + .+|||||||+|.++..+++.+ +.+++++|+ +.+++.|++++...++.++++++.+|+.+
T Consensus 157 ~~~~~~~~~~~-----~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~- 228 (334)
T 2ip2_A 157 FHEIPRLLDFR-----G-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ- 228 (334)
T ss_dssp HHHHHHHSCCT-----T-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-
T ss_pred HHHHHHhCCCC-----C-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-
Confidence 44555555432 3 899999999999999999987 679999999 99999999998877766789999999987
Q ss_pred CCCCCccceEEccccccCcCCHH--HHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCC
Q 017428 221 PFPDGQFDLVWSMESGEHMPDKS--KFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCS 298 (371)
Q Consensus 221 ~~~~~~fD~v~~~~~l~~~~~~~--~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (371)
+++ ++||+|++..++|++++.. .++++++++|+|||++++.+...+.... ....... ........ .+ ..++
T Consensus 229 ~~~-~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~--~~~~~~~-~~~~~~~~-~~--~~~t 301 (334)
T 2ip2_A 229 EVP-SNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEP--SPMSVLW-DVHLFMAC-AG--RHRT 301 (334)
T ss_dssp CCC-SSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSC--CHHHHHH-HHHHHHHH-SC--CCCB
T ss_pred CCC-CCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCC--cchhHHh-hhHhHhhC-CC--cCCC
Confidence 555 6799999999999998765 9999999999999999999876443211 1111111 11100111 11 2458
Q ss_pred HHHHHHHHHhCCCceEEEEec
Q 017428 299 TADYVKLLQSLSLEDIKAEDW 319 (371)
Q Consensus 299 ~~~~~~ll~~aGF~~v~~~~~ 319 (371)
.++|.++|+++||+++++...
T Consensus 302 ~~e~~~ll~~aGf~~~~~~~~ 322 (334)
T 2ip2_A 302 TEEVVDLLGRGGFAVERIVDL 322 (334)
T ss_dssp HHHHHHHHHHTTEEEEEEEEE
T ss_pred HHHHHHHHHHCCCceeEEEEC
Confidence 999999999999999988754
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.1e-19 Score=156.10 Aligned_cols=156 Identities=21% Similarity=0.242 Sum_probs=116.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
++.+|||+|||+|.++..++...+.+|+|+|+|+.+++.|++++...+ .++.+.++|+.++++++++||+|++..+++
T Consensus 23 ~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 100 (209)
T 2p8j_A 23 LDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENN--FKLNISKGDIRKLPFKDESMSFVYSYGTIF 100 (209)
T ss_dssp SCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHT--CCCCEEECCTTSCCSCTTCEEEEEECSCGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC--CceEEEECchhhCCCCCCceeEEEEcChHH
Confidence 378999999999998554444447899999999999999999988766 478999999999888889999999999999
Q ss_pred Cc--CCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCcc-ccChHHHHHHHHHhhcc-CCCCCCCHHHHHHHHHhCCCce
Q 017428 238 HM--PDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEE-SLQPWEQELLKKICDAY-YLPAWCSTADYVKLLQSLSLED 313 (371)
Q Consensus 238 ~~--~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ll~~aGF~~ 313 (371)
|+ .+...++++++++|||||++++.++.......... .+... .+....... ....+++.+++.++++++||..
T Consensus 101 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~ 177 (209)
T 2p8j_A 101 HMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEKIGEG---EFLQLERGEKVIHSYVSLEEADKYFKDMKVLF 177 (209)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTTCSEEEETT---EEEECC-CCCEEEEEECHHHHHHTTTTSEEEE
T ss_pred hCCHHHHHHHHHHHHHHcCCCcEEEEEEecccchhccchhhhccc---cceeccCCCceeEEecCHHHHHHHHhhcCcee
Confidence 99 67789999999999999999999876543221100 00000 000000000 0113578999999999999987
Q ss_pred EEEEe
Q 017428 314 IKAED 318 (371)
Q Consensus 314 v~~~~ 318 (371)
.+...
T Consensus 178 ~~~~~ 182 (209)
T 2p8j_A 178 KEDRV 182 (209)
T ss_dssp EEEEE
T ss_pred eeeee
Confidence 66543
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.4e-17 Score=157.02 Aligned_cols=164 Identities=18% Similarity=0.203 Sum_probs=125.0
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC
Q 017428 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP 221 (371)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 221 (371)
..++..+...+ +.+|||||||+|.++..+++.+ +.+++++|+ +.+++.|++++...++.++++++.+|+.+ +
T Consensus 173 ~~l~~~~~~~~-----~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~ 245 (360)
T 1tw3_A 173 DAPAAAYDWTN-----VRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-P 245 (360)
T ss_dssp HHHHHHSCCTT-----CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-C
T ss_pred HHHHHhCCCcc-----CcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-C
Confidence 34455555443 7899999999999999999987 679999999 99999999999988887799999999976 4
Q ss_pred CCCCccceEEccccccCcCCH--HHHHHHHHHhcCCCcEEEEEecc-CCCCCcCccccChHHHHHHHHHhhccCCCCCCC
Q 017428 222 FPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIVTWC-HRDLAPSEESLQPWEQELLKKICDAYYLPAWCS 298 (371)
Q Consensus 222 ~~~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (371)
++. .||+|++..+++++++. ..++++++++|+|||++++.+.. .+.... ..+.... ........ + ...++
T Consensus 246 ~~~-~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~--~~~~~~~-~~~~~~~~--~-~~~~t 318 (360)
T 1tw3_A 246 LPR-KADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSF--NEQFTEL-DLRMLVFL--G-GALRT 318 (360)
T ss_dssp CSS-CEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCC--SHHHHHH-HHHHHHHH--S-CCCCB
T ss_pred CCC-CccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCC--cchhhhc-cHHHhhhc--C-CcCCC
Confidence 443 49999999999999876 58999999999999999999865 322110 0111111 11100111 1 13569
Q ss_pred HHHHHHHHHhCCCceEEEEecC
Q 017428 299 TADYVKLLQSLSLEDIKAEDWS 320 (371)
Q Consensus 299 ~~~~~~ll~~aGF~~v~~~~~~ 320 (371)
.++|.++|+++||+++++....
T Consensus 319 ~~e~~~ll~~aGf~~~~~~~~~ 340 (360)
T 1tw3_A 319 REKWDGLAASAGLVVEEVRQLP 340 (360)
T ss_dssp HHHHHHHHHHTTEEEEEEEEEE
T ss_pred HHHHHHHHHHCCCeEEEEEeCC
Confidence 9999999999999999887654
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.3e-18 Score=151.73 Aligned_cols=159 Identities=13% Similarity=0.137 Sum_probs=118.5
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCC-----CccceEEc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPD-----GQFDLVWS 232 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-----~~fD~v~~ 232 (371)
++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++.. ..++.++++|+.+.+... ..||+|++
T Consensus 56 ~~~~vLD~GcG~G~~~~~la~~-~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~ 130 (245)
T 3ggd_A 56 PELPLIDFACGNGTQTKFLSQF-FPRVIGLDVSKSALEIAAKENT----AANISYRLLDGLVPEQAAQIHSEIGDANIYM 130 (245)
T ss_dssp TTSCEEEETCTTSHHHHHHHHH-SSCEEEEESCHHHHHHHHHHSC----CTTEEEEECCTTCHHHHHHHHHHHCSCEEEE
T ss_pred CCCeEEEEcCCCCHHHHHHHHh-CCCEEEEECCHHHHHHHHHhCc----ccCceEEECcccccccccccccccCccEEEE
Confidence 4789999999999999999997 4599999999999999998762 247999999998864321 34999999
Q ss_pred cccccCcC--CHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHH------HHHHHHhhccCCCCCCCHHHHHH
Q 017428 233 MESGEHMP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQ------ELLKKICDAYYLPAWCSTADYVK 304 (371)
Q Consensus 233 ~~~l~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 304 (371)
..+++|++ +...++++++++|||||++++.++...... .+..... ..+.........+..++.+++.+
T Consensus 131 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (245)
T 3ggd_A 131 RTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCID----FFNSLLEKYGQLPYELLLVMEHGIRPGIFTAEDIEL 206 (245)
T ss_dssp ESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTHHH----HHHHHHHHHSSCCHHHHHHHTTTCCCCCCCHHHHHH
T ss_pred cchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCccccH----HHHHHHhCCCCCchhhhhccccCCCCCccCHHHHHH
Confidence 99999998 789999999999999999999987543210 0000000 00111112222334578999999
Q ss_pred HHHhCCCceEEEEecCCcccCcc
Q 017428 305 LLQSLSLEDIKAEDWSQNVAPFW 327 (371)
Q Consensus 305 ll~~aGF~~v~~~~~~~~~~~~~ 327 (371)
++ +||+++...........|+
T Consensus 207 ~~--aGf~~~~~~~~~~~~~~~~ 227 (245)
T 3ggd_A 207 YF--PDFEILSQGEGLFQSIHKL 227 (245)
T ss_dssp HC--TTEEEEEEECCBCCCSCBC
T ss_pred Hh--CCCEEEeccccccceeeec
Confidence 99 9999999877665544444
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-17 Score=148.17 Aligned_cols=101 Identities=22% Similarity=0.383 Sum_probs=88.1
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEc-ccccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWS-MESGE 237 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~-~~~l~ 237 (371)
+.+|||+|||+|.++..+++.. .+|+|+|+|+.+++.|+++. +++.+..+|+.+.++ +++||+|++ ..+++
T Consensus 41 ~~~vLdiG~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~------~~~~~~~~d~~~~~~-~~~~D~v~~~~~~~~ 112 (239)
T 3bxo_A 41 ASSLLDVACGTGTHLEHFTKEF-GDTAGLELSEDMLTHARKRL------PDATLHQGDMRDFRL-GRKFSAVVSMFSSVG 112 (239)
T ss_dssp CCEEEEETCTTSHHHHHHHHHH-SEEEEEESCHHHHHHHHHHC------TTCEEEECCTTTCCC-SSCEEEEEECTTGGG
T ss_pred CCeEEEecccCCHHHHHHHHhC-CcEEEEeCCHHHHHHHHHhC------CCCEEEECCHHHccc-CCCCcEEEEcCchHh
Confidence 7899999999999999999884 59999999999999998863 468999999998876 688999995 55999
Q ss_pred CcC---CHHHHHHHHHHhcCCCcEEEEEeccCC
Q 017428 238 HMP---DKSKFVSELARVTAPAGTIIIVTWCHR 267 (371)
Q Consensus 238 ~~~---~~~~~l~~~~~~LkpgG~l~i~~~~~~ 267 (371)
|+. +...++++++++|||||.+++.++...
T Consensus 113 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 145 (239)
T 3bxo_A 113 YLKTTEELGAAVASFAEHLEPGGVVVVEPWWFP 145 (239)
T ss_dssp GCCSHHHHHHHHHHHHHTEEEEEEEEECCCCCT
T ss_pred hcCCHHHHHHHHHHHHHhcCCCeEEEEEeccCc
Confidence 985 457899999999999999999876543
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.76 E-value=9.4e-18 Score=149.07 Aligned_cols=100 Identities=24% Similarity=0.351 Sum_probs=89.3
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccc-ccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSME-SGE 237 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~-~l~ 237 (371)
+.+|||+|||+|.++..+++. .+|+|+|+|+.+++.|+++....+ .++.+..+|+.+.+++ ++||+|++.. +++
T Consensus 34 ~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~~-~~fD~v~~~~~~~~ 108 (243)
T 3d2l_A 34 GKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMETN--RHVDFWVQDMRELELP-EPVDAITILCDSLN 108 (243)
T ss_dssp TCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCGGGCCCS-SCEEEEEECTTGGG
T ss_pred CCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhhhcC--CceEEEEcChhhcCCC-CCcCEEEEeCCchh
Confidence 689999999999999999886 799999999999999999988766 4799999999988765 8899999986 999
Q ss_pred Cc---CCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 238 HM---PDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 238 ~~---~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
|+ .+...+++++.++|+|||.+++..
T Consensus 109 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 137 (243)
T 3d2l_A 109 YLQTEADVKQTFDSAARLLTDGGKLLFDV 137 (243)
T ss_dssp GCCSHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 98 455789999999999999999854
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=9.4e-18 Score=153.57 Aligned_cols=105 Identities=25% Similarity=0.304 Sum_probs=93.2
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCC---CCeEEEEcCCCCCC---CCCCccceEEc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLA---DKVSFQVGDALQQP---FPDGQFDLVWS 232 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~~---~~~~~fD~v~~ 232 (371)
+.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|+++....+.. .++.+..+|+.+++ +++++||+|++
T Consensus 58 ~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~ 136 (293)
T 3thr_A 58 CHRVLDVACGTGVDSIMLVEE-GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVIC 136 (293)
T ss_dssp CCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEEE
T ss_pred CCEEEEecCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeEEEEE
Confidence 789999999999999999987 789999999999999999876443321 36889999998876 77899999999
Q ss_pred c-ccccCcCC-------HHHHHHHHHHhcCCCcEEEEEec
Q 017428 233 M-ESGEHMPD-------KSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 233 ~-~~l~~~~~-------~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
. .+++|+++ +..++++++++|||||++++...
T Consensus 137 ~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (293)
T 3thr_A 137 LGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 176 (293)
T ss_dssp CTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 8 89999999 89999999999999999999764
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.7e-17 Score=154.58 Aligned_cols=151 Identities=17% Similarity=0.190 Sum_probs=112.6
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l 236 (371)
+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ++++++.+|+.+ +++.+ |+|++..++
T Consensus 203 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~p~~--D~v~~~~vl 271 (368)
T 3reo_A 203 GLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF-------SGVEHLGGDMFD-GVPKG--DAIFIKWIC 271 (368)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTT-CCCCC--SEEEEESCG
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc-------CCCEEEecCCCC-CCCCC--CEEEEechh
Confidence 47899999999999999999988 679999999 8888776531 589999999987 66644 999999999
Q ss_pred cCcCCH--HHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhc-cCCCCCCCHHHHHHHHHhCCCce
Q 017428 237 EHMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDA-YYLPAWCSTADYVKLLQSLSLED 313 (371)
Q Consensus 237 ~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ll~~aGF~~ 313 (371)
|++++. ..++++++++|||||+|++.+...+...... ........+...... ......++.++|.++|+++||++
T Consensus 272 h~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~g~~rt~~e~~~ll~~AGF~~ 349 (368)
T 3reo_A 272 HDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPS--IATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGFRG 349 (368)
T ss_dssp GGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCC--HHHHHHHHHHHHHHHHSSBCCCCCHHHHHHHHHHTTCCE
T ss_pred hcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCc--hhhhHHHhhhHHHHhhcCCCccCCHHHHHHHHHHCCCee
Confidence 999765 4889999999999999999997654322111 001111111111110 11112468999999999999999
Q ss_pred EEEEecCC
Q 017428 314 IKAEDWSQ 321 (371)
Q Consensus 314 v~~~~~~~ 321 (371)
+++.....
T Consensus 350 v~~~~~~~ 357 (368)
T 3reo_A 350 FKVASCAF 357 (368)
T ss_dssp EEEEEEET
T ss_pred eEEEEeCC
Confidence 98876543
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=5.2e-17 Score=153.30 Aligned_cols=163 Identities=15% Similarity=0.146 Sum_probs=118.8
Q ss_pred HHHHHHHHcC-CCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 017428 141 MIEETLRFAG-VSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (371)
Q Consensus 141 ~~~~~l~~~~-~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (371)
....++..+. .. +..+|||||||+|.++..+++.+ +.+++++|+ +.+++.|++. ++++|+.+|+.
T Consensus 188 ~~~~~~~~~~~~~-----~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~ 254 (364)
T 3p9c_A 188 ITKKLLELYHGFE-----GLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQF-------PGVTHVGGDMF 254 (364)
T ss_dssp HHHHHHHHCCTTT-----TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTT
T ss_pred HHHHHHHhccccc-----CCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhc-------CCeEEEeCCcC
Confidence 3455666554 33 37899999999999999999988 679999999 8888776531 58999999998
Q ss_pred CCCCCCCccceEEccccccCcCCH--HHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhh-ccCCCC
Q 017428 219 QQPFPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICD-AYYLPA 295 (371)
Q Consensus 219 ~~~~~~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 295 (371)
+ +++.+ |+|++..++|++++. ..++++++++|||||+|++.+...+...... ........+..... ......
T Consensus 255 ~-~~p~~--D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~--~~~~~~~~~d~~m~~~~~~g~ 329 (364)
T 3p9c_A 255 K-EVPSG--DTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEAN--PSSQGVFHVDMIMLAHNPGGR 329 (364)
T ss_dssp T-CCCCC--SEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSS--HHHHHHHHHHHHHHHHCSSCC
T ss_pred C-CCCCC--CEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcc--hhhhhHHHhHHHHHhcccCCc
Confidence 8 66654 999999999999654 6899999999999999999997654322111 00000011111111 011112
Q ss_pred CCCHHHHHHHHHhCCCceEEEEecCC
Q 017428 296 WCSTADYVKLLQSLSLEDIKAEDWSQ 321 (371)
Q Consensus 296 ~~~~~~~~~ll~~aGF~~v~~~~~~~ 321 (371)
.++.++|.++|+++||+++++.....
T Consensus 330 ~rt~~e~~~ll~~AGF~~v~~~~~~~ 355 (364)
T 3p9c_A 330 ERYEREFQALARGAGFTGVKSTYIYA 355 (364)
T ss_dssp CCBHHHHHHHHHHTTCCEEEEEEEET
T ss_pred cCCHHHHHHHHHHCCCceEEEEEcCC
Confidence 46899999999999999999876543
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.75 E-value=8.8e-17 Score=139.22 Aligned_cols=135 Identities=13% Similarity=0.053 Sum_probs=111.2
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC
Q 017428 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP 221 (371)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 221 (371)
..++..+.+.+ +.+|||+|||+|.++..+++.. ..+|+|+|+|+.+++.|+++++..++ ++++++.+|+.+..
T Consensus 30 ~~~l~~l~~~~-----~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~ 103 (204)
T 3e05_A 30 AVTLSKLRLQD-----DLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVA-RNVTLVEAFAPEGL 103 (204)
T ss_dssp HHHHHHTTCCT-----TCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTC-TTEEEEECCTTTTC
T ss_pred HHHHHHcCCCC-----CCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeCChhhhh
Confidence 44556666554 8899999999999999999986 48999999999999999999998887 68999999997654
Q ss_pred CCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHH
Q 017428 222 FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTAD 301 (371)
Q Consensus 222 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (371)
...++||+|++...++ +...+++++.++|||||++++..... .+.++
T Consensus 104 ~~~~~~D~i~~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~------------------------------~~~~~ 150 (204)
T 3e05_A 104 DDLPDPDRVFIGGSGG---MLEEIIDAVDRRLKSEGVIVLNAVTL------------------------------DTLTK 150 (204)
T ss_dssp TTSCCCSEEEESCCTT---CHHHHHHHHHHHCCTTCEEEEEECBH------------------------------HHHHH
T ss_pred hcCCCCCEEEECCCCc---CHHHHHHHHHHhcCCCeEEEEEeccc------------------------------ccHHH
Confidence 3347899999987765 78899999999999999999976321 13567
Q ss_pred HHHHHHhCCCceEEEE
Q 017428 302 YVKLLQSLSLEDIKAE 317 (371)
Q Consensus 302 ~~~ll~~aGF~~v~~~ 317 (371)
+.++++++|| .+++.
T Consensus 151 ~~~~l~~~g~-~~~~~ 165 (204)
T 3e05_A 151 AVEFLEDHGY-MVEVA 165 (204)
T ss_dssp HHHHHHHTTC-EEEEE
T ss_pred HHHHHHHCCC-ceeEE
Confidence 8889999999 55443
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=4.5e-19 Score=157.43 Aligned_cols=104 Identities=20% Similarity=0.166 Sum_probs=89.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--CCCCCccceEEc---
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--PFPDGQFDLVWS--- 232 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD~v~~--- 232 (371)
++.+|||||||+|..+..+++..+.+|+|||+|+.+++.|+++....+ .++.++.+|+.+. ++++++||.|+.
T Consensus 60 ~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~ 137 (236)
T 3orh_A 60 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCC--CceEEEeehHHhhcccccccCCceEEEeee
Confidence 488999999999999999988656789999999999999999987765 4788999997654 467889999874
Q ss_pred --cccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 233 --MESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 233 --~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
...++|+.+...++++++|+|||||+|++.+
T Consensus 138 ~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~ 170 (236)
T 3orh_A 138 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred ecccchhhhcchhhhhhhhhheeCCCCEEEEEe
Confidence 5667788889999999999999999998754
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=7.9e-18 Score=151.55 Aligned_cols=149 Identities=11% Similarity=0.031 Sum_probs=114.6
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCC----------------------------CC
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGL----------------------------AD 208 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~----------------------------~~ 208 (371)
++.+|||||||+|.++..++.. +. +|+|+|+|+.+++.+++++...+. ..
T Consensus 56 ~~~~vLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 134 (265)
T 2i62_A 56 KGELLIDIGSGPTIYQLLSACE-SFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRR 134 (265)
T ss_dssp CEEEEEEESCTTCCGGGTTGGG-TEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred CCCEEEEECCCccHHHHHHhhc-ccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhh
Confidence 4789999999999999988876 44 899999999999999988754320 00
Q ss_pred Ce-EEEEcCCCCCC-CCC---CccceEEcccccc----CcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChH
Q 017428 209 KV-SFQVGDALQQP-FPD---GQFDLVWSMESGE----HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPW 279 (371)
Q Consensus 209 ~v-~~~~~d~~~~~-~~~---~~fD~v~~~~~l~----~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~ 279 (371)
++ .+.++|+.+.+ +++ ++||+|++..+++ +++++..+++++.++|||||+|++.+........ .
T Consensus 135 ~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~----~--- 207 (265)
T 2i62_A 135 AIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYM----I--- 207 (265)
T ss_dssp HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEE----E---
T ss_pred hheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEE----c---
Confidence 27 89999998864 355 8899999999999 6667889999999999999999998854321100 0
Q ss_pred HHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEEEecCCc
Q 017428 280 EQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQN 322 (371)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~~~ 322 (371)
.........++.+++.++|+++||+++++......
T Consensus 208 --------~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~ 242 (265)
T 2i62_A 208 --------GEQKFSSLPLGWETVRDAVEEAGYTIEQFEVISQN 242 (265)
T ss_dssp --------TTEEEECCCCCHHHHHHHHHHTTCEEEEEEEECCC
T ss_pred --------CCccccccccCHHHHHHHHHHCCCEEEEEEEeccc
Confidence 00010112468999999999999999998876543
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.74 E-value=9e-18 Score=151.17 Aligned_cols=152 Identities=21% Similarity=0.237 Sum_probs=109.7
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 238 (371)
+.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++.. .+ +.++|+.++++++++||+|++..++.|
T Consensus 55 ~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~l~~a~~~~~-----~~--~~~~d~~~~~~~~~~fD~v~~~~~~~~ 126 (260)
T 2avn_A 55 PCRVLDLGGGTGKWSLFLQER-GFEVVLVDPSKEMLEVAREKGV-----KN--VVEAKAEDLPFPSGAFEAVLALGDVLS 126 (260)
T ss_dssp CCEEEEETCTTCHHHHHHHTT-TCEEEEEESCHHHHHHHHHHTC-----SC--EEECCTTSCCSCTTCEEEEEECSSHHH
T ss_pred CCeEEEeCCCcCHHHHHHHHc-CCeEEEEeCCHHHHHHHHhhcC-----CC--EEECcHHHCCCCCCCEEEEEEcchhhh
Confidence 789999999999999999987 7899999999999999988742 12 889999998888899999999887766
Q ss_pred c-CCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcC---ccccChHHHHHHHHHhhc-cC-----CCCCCCHHHHHHHHHh
Q 017428 239 M-PDKSKFVSELARVTAPAGTIIIVTWCHRDLAPS---EESLQPWEQELLKKICDA-YY-----LPAWCSTADYVKLLQS 308 (371)
Q Consensus 239 ~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~ll~~ 308 (371)
+ +++..+++++.++|||||.+++...+....... ...+ ......+...... .. ...+++++++.++
T Consensus 127 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--- 202 (260)
T 2avn_A 127 YVENKDKAFSEIRRVLVPDGLLIATVDNFYTFLQQMIEKDAW-DQITRFLKTQTTSVGTTLFSFNSYAFKPEDLDSL--- 202 (260)
T ss_dssp HCSCHHHHHHHHHHHEEEEEEEEEEEEBHHHHHHHHHHTTCH-HHHHHHHHHCEEEEECSSEEEEEECBCGGGGSSC---
T ss_pred ccccHHHHHHHHHHHcCCCeEEEEEeCChHHHHHHhhcchhH-HHHHHHHhccccccCCCceeEEEeccCHHHHHHh---
Confidence 6 789999999999999999999987542100000 0000 0000111110000 00 0125688888887
Q ss_pred CCCceEEEEecCCc
Q 017428 309 LSLEDIKAEDWSQN 322 (371)
Q Consensus 309 aGF~~v~~~~~~~~ 322 (371)
+||+++++......
T Consensus 203 aGf~~~~~~~~~~~ 216 (260)
T 2avn_A 203 EGFETVDIRGIGVM 216 (260)
T ss_dssp TTEEEEEEEEECSS
T ss_pred cCceEEEEECCCCc
Confidence 99999988765543
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.74 E-value=9.1e-17 Score=139.27 Aligned_cols=134 Identities=16% Similarity=0.076 Sum_probs=109.1
Q ss_pred HHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC
Q 017428 144 ETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP 223 (371)
Q Consensus 144 ~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 223 (371)
.++..+.+.+ +.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++++..+++.+++++.+|+.+....
T Consensus 46 ~~l~~l~~~~-----~~~vLDlGcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~ 119 (204)
T 3njr_A 46 LTLAALAPRR-----GELLWDIGGGSGSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALAD 119 (204)
T ss_dssp HHHHHHCCCT-----TCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTT
T ss_pred HHHHhcCCCC-----CCEEEEecCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhccc
Confidence 3455555554 889999999999999999998 8899999999999999999999999876899999999884223
Q ss_pred CCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHH
Q 017428 224 DGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYV 303 (371)
Q Consensus 224 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (371)
...||+|++...+ +.. +++++.++|||||++++..... .+..++.
T Consensus 120 ~~~~D~v~~~~~~----~~~-~l~~~~~~LkpgG~lv~~~~~~------------------------------~~~~~~~ 164 (204)
T 3njr_A 120 LPLPEAVFIGGGG----SQA-LYDRLWEWLAPGTRIVANAVTL------------------------------ESETLLT 164 (204)
T ss_dssp SCCCSEEEECSCC----CHH-HHHHHHHHSCTTCEEEEEECSH------------------------------HHHHHHH
T ss_pred CCCCCEEEECCcc----cHH-HHHHHHHhcCCCcEEEEEecCc------------------------------ccHHHHH
Confidence 4679999987644 566 9999999999999999976321 1355677
Q ss_pred HHHHhCCCceEEEEe
Q 017428 304 KLLQSLSLEDIKAED 318 (371)
Q Consensus 304 ~ll~~aGF~~v~~~~ 318 (371)
+++++.||+++.+..
T Consensus 165 ~~l~~~g~~i~~i~~ 179 (204)
T 3njr_A 165 QLHARHGGQLLRIDI 179 (204)
T ss_dssp HHHHHHCSEEEEEEE
T ss_pred HHHHhCCCcEEEEEe
Confidence 889999998777643
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.74 E-value=9.4e-17 Score=145.52 Aligned_cols=162 Identities=10% Similarity=0.104 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCc---ChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEE
Q 017428 137 AQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGI---GGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSF 212 (371)
Q Consensus 137 ~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~Gt---G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~ 212 (371)
..+.++.+++..+.... +..+|||||||+ |.++..+++.. +.+|+++|+|+.|++.|++++.. .+++++
T Consensus 60 ~~~~~~~~~~~~l~~~~----~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~---~~~v~~ 132 (274)
T 2qe6_A 60 ENRKVLVRGVRFLAGEA----GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK---DPNTAV 132 (274)
T ss_dssp HHHHHHHHHHHHHHTTT----CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT---CTTEEE
T ss_pred HHhHHHHHHHHHHhhcc----CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC---CCCeEE
Confidence 34455566665543221 257999999999 99887776665 68999999999999999998743 257999
Q ss_pred EEcCCCCCC-----------CCCCccceEEccccccCcCC--HHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChH
Q 017428 213 QVGDALQQP-----------FPDGQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPW 279 (371)
Q Consensus 213 ~~~d~~~~~-----------~~~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~ 279 (371)
+++|+.+.+ ++.++||+|++..++||+++ ...++++++++|+|||+|++.++..+. + .....
T Consensus 133 ~~~D~~~~~~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~~--~--~~~~~- 207 (274)
T 2qe6_A 133 FTADVRDPEYILNHPDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDTG--L--PAQQK- 207 (274)
T ss_dssp EECCTTCHHHHHHSHHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCSS--C--HHHHH-
T ss_pred EEeeCCCchhhhccchhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCcc--h--HHHHH-
Confidence 999997631 23358999999999999987 899999999999999999999976532 1 11111
Q ss_pred HHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEE
Q 017428 280 EQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIK 315 (371)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~ 315 (371)
....+..... . ..+++.+++.++| .||++++
T Consensus 208 ~~~~~~~~~~--~-~~~~s~~ei~~~l--~G~~l~~ 238 (274)
T 2qe6_A 208 LARITRENLG--E-GWARTPEEIERQF--GDFELVE 238 (274)
T ss_dssp HHHHHHHHHS--C-CCCBCHHHHHHTT--TTCEECT
T ss_pred HHHHHHhcCC--C-CccCCHHHHHHHh--CCCeEcc
Confidence 1122222111 1 1357999999999 5998765
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.73 E-value=4.9e-17 Score=145.45 Aligned_cols=117 Identities=27% Similarity=0.386 Sum_probs=96.0
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 017428 139 VRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (371)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (371)
...+..++...... ++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++...+. ++.++++|+.
T Consensus 27 ~~~~~~~~~~~~~~-----~~~~vLDlGcG~G~~~~~l~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~ 98 (252)
T 1wzn_A 27 IDFVEEIFKEDAKR-----EVRRVLDLACGTGIPTLELAER-GYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVL 98 (252)
T ss_dssp HHHHHHHHHHTCSS-----CCCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGG
T ss_pred HHHHHHHHHHhccc-----CCCEEEEeCCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEECChh
Confidence 34566666665443 3789999999999999999987 78999999999999999999987764 7999999999
Q ss_pred CCCCCCCccceEEccc-cccCcC--CHHHHHHHHHHhcCCCcEEEEEec
Q 017428 219 QQPFPDGQFDLVWSME-SGEHMP--DKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 219 ~~~~~~~~fD~v~~~~-~l~~~~--~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
+++++ ++||+|++.. .++++. +...+++++.++|+|||.+++...
T Consensus 99 ~~~~~-~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~ 146 (252)
T 1wzn_A 99 EIAFK-NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFP 146 (252)
T ss_dssp GCCCC-SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hcccC-CCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEecc
Confidence 88764 7899999864 444443 567899999999999999987543
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=7.1e-17 Score=151.74 Aligned_cols=164 Identities=18% Similarity=0.224 Sum_probs=121.0
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC
Q 017428 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP 221 (371)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 221 (371)
..++....... ..+|||||||+|.++..+++++ +.+++..|+ |.+++.|++++...+ .++|+++.+|+.+.+
T Consensus 169 ~~~~~~~~~~~-----~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~-~~rv~~~~gD~~~~~ 241 (353)
T 4a6d_A 169 RSVLTAFDLSV-----FPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQE-EEQIDFQEGDFFKDP 241 (353)
T ss_dssp HHHHHSSCGGG-----CSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC---CCSEEEEESCTTTSC
T ss_pred HHHHHhcCccc-----CCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcc-cCceeeecCccccCC
Confidence 34444444443 6899999999999999999998 778999998 889999998876544 479999999998766
Q ss_pred CCCCccceEEccccccCcCCH--HHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCH
Q 017428 222 FPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCST 299 (371)
Q Consensus 222 ~~~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (371)
.+ .+|+|++..+||+++|. ..+|+++++.|+|||+|+|.+...+..... ......+.-..-......-.|.
T Consensus 242 ~~--~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~-----~~~~~~~dl~ml~~~~g~ert~ 314 (353)
T 4a6d_A 242 LP--EADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRG-----PLLTQLYSLNMLVQTEGQERTP 314 (353)
T ss_dssp CC--CCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCC-----CHHHHHHHHHHHHSSSCCCCCH
T ss_pred CC--CceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCC-----CHHHHHHHHHHHHhCCCcCCCH
Confidence 44 47999999999999876 578999999999999999999765432211 1111111111000111123689
Q ss_pred HHHHHHHHhCCCceEEEEecC
Q 017428 300 ADYVKLLQSLSLEDIKAEDWS 320 (371)
Q Consensus 300 ~~~~~ll~~aGF~~v~~~~~~ 320 (371)
++|+++|+++||+++++....
T Consensus 315 ~e~~~ll~~AGf~~v~v~~~~ 335 (353)
T 4a6d_A 315 THYHMLLSSAGFRDFQFKKTG 335 (353)
T ss_dssp HHHHHHHHHHTCEEEEEECCS
T ss_pred HHHHHHHHHCCCceEEEEEcC
Confidence 999999999999999887543
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.3e-17 Score=138.85 Aligned_cols=126 Identities=23% Similarity=0.368 Sum_probs=108.4
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcc-ccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSM-ESG 236 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~-~~l 236 (371)
++.+|||+|||+|.++..+++. +.+|+|+|+++.+++.++++. .++.+...|+.+.++++++||+|++. .++
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~~~-~~~v~~~D~~~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~ 118 (195)
T 3cgg_A 46 RGAKILDAGCGQGRIGGYLSKQ-GHDVLGTDLDPILIDYAKQDF------PEARWVVGDLSVDQISETDFDLIVSAGNVM 118 (195)
T ss_dssp TTCEEEEETCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHC------TTSEEEECCTTTSCCCCCCEEEEEECCCCG
T ss_pred CCCeEEEECCCCCHHHHHHHHC-CCcEEEEcCCHHHHHHHHHhC------CCCcEEEcccccCCCCCCceeEEEECCcHH
Confidence 3789999999999999999987 789999999999999998864 36899999999888778899999998 788
Q ss_pred cCcC--CHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceE
Q 017428 237 EHMP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDI 314 (371)
Q Consensus 237 ~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v 314 (371)
+|+. +...+++++.++|+|||.+++...... .++.+++.++++++||+++
T Consensus 119 ~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~----------------------------~~~~~~~~~~l~~~Gf~~~ 170 (195)
T 3cgg_A 119 GFLAEDGREPALANIHRALGADGRAVIGFGAGR----------------------------GWVFGDFLEVAERVGLELE 170 (195)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEETTS----------------------------SCCHHHHHHHHHHHTEEEE
T ss_pred hhcChHHHHHHHHHHHHHhCCCCEEEEEeCCCC----------------------------CcCHHHHHHHHHHcCCEEe
Confidence 8874 458899999999999999999763211 2478899999999999988
Q ss_pred EEEe
Q 017428 315 KAED 318 (371)
Q Consensus 315 ~~~~ 318 (371)
+...
T Consensus 171 ~~~~ 174 (195)
T 3cgg_A 171 NAFE 174 (195)
T ss_dssp EEES
T ss_pred eeec
Confidence 7754
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.73 E-value=3e-17 Score=150.77 Aligned_cols=165 Identities=12% Similarity=0.081 Sum_probs=112.0
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCC-----CeEEEEcCCCC------C--CCCC
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLAD-----KVSFQVGDALQ------Q--PFPD 224 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~-----~v~~~~~d~~~------~--~~~~ 224 (371)
++.+|||||||+|..+..++...+.+|+|+|+|+.|++.|+++....+... ++.|.+.|+.. + ++++
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~ 127 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF 127 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccC
Confidence 478999999999987766665435799999999999999999987665321 26788888832 2 2467
Q ss_pred CccceEEccccccCc---CCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCcc-----ccC-----h-HH------H-HH
Q 017428 225 GQFDLVWSMESGEHM---PDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEE-----SLQ-----P-WE------Q-EL 283 (371)
Q Consensus 225 ~~fD~v~~~~~l~~~---~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~-----~~~-----~-~~------~-~~ 283 (371)
++||+|+|..++|++ .+...++++++++|||||++++...+......... ... . +. . .+
T Consensus 128 ~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 207 (302)
T 2vdw_A 128 GKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDGDKLSKLTDKKTFIIHKNLPSSENYMSVEKIADDRI 207 (302)
T ss_dssp SCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECHHHHTTCCSCEEEECCSSSCTTTSEEEECEEETTEE
T ss_pred CCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHhcCCcccccccccccceeeecccccccc
Confidence 899999999999875 45689999999999999999998753211110000 000 0 00 0 00
Q ss_pred --HHHHhhccCCC-CCCCHHHHHHHHHhCCCceEEEEecCCc
Q 017428 284 --LKKICDAYYLP-AWCSTADYVKLLQSLSLEDIKAEDWSQN 322 (371)
Q Consensus 284 --~~~~~~~~~~~-~~~~~~~~~~ll~~aGF~~v~~~~~~~~ 322 (371)
+.........+ .+.+++++.++++++||+.++...+...
T Consensus 208 ~~~~~~~~~~~~~e~~v~~~el~~l~~~~Gl~lv~~~~f~~~ 249 (302)
T 2vdw_A 208 VVYNPSTMSTPMTEYIIKKNDIVRVFNEYGFVLVDNVDFATI 249 (302)
T ss_dssp EEBCTTTBSSCEEEECCCHHHHHHHHHHTTEEEEEEEEHHHH
T ss_pred ceeeccccCCCceeeeeEHHHHHHHHHHCCCEEEEecChHHH
Confidence 00000001111 2467899999999999999998766543
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.73 E-value=4.7e-17 Score=148.49 Aligned_cols=137 Identities=18% Similarity=0.216 Sum_probs=112.5
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 238 (371)
+.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++...++ ++.+..+|+.+.++ +++||+|++..+++|
T Consensus 121 ~~~vLD~GcG~G~~~~~l~~~-g~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~-~~~fD~i~~~~~~~~ 196 (286)
T 3m70_A 121 PCKVLDLGCGQGRNSLYLSLL-GYDVTSWDHNENSIAFLNETKEKENL--NISTALYDINAANI-QENYDFIVSTVVFMF 196 (286)
T ss_dssp SCEEEEESCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCGGGCCC-CSCEEEEEECSSGGG
T ss_pred CCcEEEECCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHHcCC--ceEEEEeccccccc-cCCccEEEEccchhh
Confidence 789999999999999999987 78999999999999999999998876 79999999998876 789999999999999
Q ss_pred cCC--HHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEE
Q 017428 239 MPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKA 316 (371)
Q Consensus 239 ~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~ 316 (371)
+++ ...+++++.++|+|||.+++.........+. .......++.+++.+++.. |+++..
T Consensus 197 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~-----------------~~~~~~~~~~~~l~~~~~~--~~~~~~ 257 (286)
T 3m70_A 197 LNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPC-----------------PLPFSFTFAENELKEYYKD--WEFLEY 257 (286)
T ss_dssp SCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCC-----------------SSCCSCCBCTTHHHHHTTT--SEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCC-----------------CCCccccCCHHHHHHHhcC--CEEEEE
Confidence 954 5799999999999999988876543322111 0111124678889888865 888877
Q ss_pred Ee
Q 017428 317 ED 318 (371)
Q Consensus 317 ~~ 318 (371)
..
T Consensus 258 ~~ 259 (286)
T 3m70_A 258 NE 259 (286)
T ss_dssp EC
T ss_pred Ec
Confidence 54
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.5e-17 Score=143.78 Aligned_cols=102 Identities=22% Similarity=0.305 Sum_probs=92.0
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++... ++++++++|+.+.+ ++++||+|++..+++
T Consensus 51 ~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~ 125 (216)
T 3ofk_A 51 AVSNGLEIGCAAGAFTEKLAPH-CKRLTVIDVMPRAIGRACQRTKRW---SHISWAATDILQFS-TAELFDLIVVAEVLY 125 (216)
T ss_dssp SEEEEEEECCTTSHHHHHHGGG-EEEEEEEESCHHHHHHHHHHTTTC---SSEEEEECCTTTCC-CSCCEEEEEEESCGG
T ss_pred CCCcEEEEcCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHhcccC---CCeEEEEcchhhCC-CCCCccEEEEccHHH
Confidence 3789999999999999999887 579999999999999999987653 37999999999987 678999999999999
Q ss_pred CcCCH---HHHHHHHHHhcCCCcEEEEEec
Q 017428 238 HMPDK---SKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 238 ~~~~~---~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
|++++ ..+++++.++|||||.+++...
T Consensus 126 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 155 (216)
T 3ofk_A 126 YLEDMTQMRTAIDNMVKMLAPGGHLVFGSA 155 (216)
T ss_dssp GSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hCCCHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 99987 5779999999999999999774
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.72 E-value=6.6e-17 Score=136.54 Aligned_cols=136 Identities=12% Similarity=0.060 Sum_probs=108.3
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (371)
+...++..+...+ +.+|||+|||+|.++..+++.+ +.+|+|+|+|+.+++.|++++...+++.++ ++.+|..+
T Consensus 13 ~~~~~~~~~~~~~-----~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~ 86 (178)
T 3hm2_A 13 VRALAISALAPKP-----HETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPR 86 (178)
T ss_dssp HHHHHHHHHCCCT-----TEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTG
T ss_pred HHHHHHHHhcccC-----CCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHh
Confidence 3345555555544 7899999999999999999987 679999999999999999999988887689 88888755
Q ss_pred CCCCC--CccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCC
Q 017428 220 QPFPD--GQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWC 297 (371)
Q Consensus 220 ~~~~~--~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (371)
.++. ++||+|++..++++ ..+++++.++|||||++++..... .
T Consensus 87 -~~~~~~~~~D~i~~~~~~~~----~~~l~~~~~~L~~gG~l~~~~~~~------------------------------~ 131 (178)
T 3hm2_A 87 -AFDDVPDNPDVIFIGGGLTA----PGVFAAAWKRLPVGGRLVANAVTV------------------------------E 131 (178)
T ss_dssp -GGGGCCSCCSEEEECC-TTC----TTHHHHHHHTCCTTCEEEEEECSH------------------------------H
T ss_pred -hhhccCCCCCEEEECCcccH----HHHHHHHHHhcCCCCEEEEEeecc------------------------------c
Confidence 3333 88999999998887 678999999999999999976421 0
Q ss_pred CHHHHHHHHHhCCCceEEEE
Q 017428 298 STADYVKLLQSLSLEDIKAE 317 (371)
Q Consensus 298 ~~~~~~~ll~~aGF~~v~~~ 317 (371)
+...+.+++++.|++...+.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~ 151 (178)
T 3hm2_A 132 SEQMLWALRKQFGGTISSFA 151 (178)
T ss_dssp HHHHHHHHHHHHCCEEEEEE
T ss_pred cHHHHHHHHHHcCCeeEEEE
Confidence 24456678888888766543
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=3.8e-18 Score=151.40 Aligned_cols=105 Identities=19% Similarity=0.135 Sum_probs=87.7
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--CCCCCccceEEc-cc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--PFPDGQFDLVWS-ME 234 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD~v~~-~~ 234 (371)
++.+|||||||+|.++..+++....+|+|+|+|+.|++.|+++.+..+ .++.++++|+.++ ++++++||+|++ .+
T Consensus 60 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~ 137 (236)
T 1zx0_A 60 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcC--CCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence 378999999999999999977534489999999999999999887665 5799999999887 788899999998 55
Q ss_pred cc----cCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 235 SG----EHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 235 ~l----~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
.+ .+..+...++++++++|||||++++.+.
T Consensus 138 ~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 171 (236)
T 1zx0_A 138 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNL 171 (236)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCH
T ss_pred ccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEec
Confidence 43 1222345789999999999999998764
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=6.5e-17 Score=153.23 Aligned_cols=158 Identities=19% Similarity=0.229 Sum_probs=117.3
Q ss_pred HHHHHHHcC-CCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 017428 142 IEETLRFAG-VSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (371)
Q Consensus 142 ~~~~l~~~~-~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (371)
...++..+. +. +..+|||||||+|.++..+++.+ +.+++++|+ +.+++.|++ . ++++++.+|+.+
T Consensus 197 ~~~l~~~~~~~~-----~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~d~~~ 263 (372)
T 1fp1_D 197 MKRMLEIYTGFE-----GISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP------L-SGIEHVGGDMFA 263 (372)
T ss_dssp HHHHHHHCCTTT-----TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------C-TTEEEEECCTTT
T ss_pred HHHHHHHhhccC-----CCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh------c-CCCEEEeCCccc
Confidence 455666654 33 37899999999999999999987 678999999 999887764 2 479999999987
Q ss_pred CCCCCCccceEEccccccCcCCHH--HHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHH--hhccCCCC
Q 017428 220 QPFPDGQFDLVWSMESGEHMPDKS--KFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKI--CDAYYLPA 295 (371)
Q Consensus 220 ~~~~~~~fD~v~~~~~l~~~~~~~--~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 295 (371)
+++. ||+|++..++||+++.. .++++++++|||||+|++.+...+..... .........+... ....+ .
T Consensus 264 -~~~~--~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~--~~~~~~~~~~d~~~~~~~~~--~ 336 (372)
T 1fp1_D 264 -SVPQ--GDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNT--SEESKLVSTLDNLMFITVGG--R 336 (372)
T ss_dssp -CCCC--EEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCS--SHHHHHHHHHHHHHHHHHSC--C
T ss_pred -CCCC--CCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCcc--chHHHHHHHhhHHHHhccCC--c
Confidence 6654 99999999999999887 99999999999999999998764432211 0000001111110 01111 2
Q ss_pred CCCHHHHHHHHHhCCCceEEEEec
Q 017428 296 WCSTADYVKLLQSLSLEDIKAEDW 319 (371)
Q Consensus 296 ~~~~~~~~~ll~~aGF~~v~~~~~ 319 (371)
.++.++|.++|+++||+++++...
T Consensus 337 ~~t~~e~~~ll~~aGf~~~~~~~~ 360 (372)
T 1fp1_D 337 ERTEKQYEKLSKLSGFSKFQVACR 360 (372)
T ss_dssp CEEHHHHHHHHHHTTCSEEEEEEE
T ss_pred cCCHHHHHHHHHHCCCceEEEEEc
Confidence 458999999999999999988763
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.2e-17 Score=144.09 Aligned_cols=113 Identities=19% Similarity=0.255 Sum_probs=96.7
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
++.+|||||||+|.++..+ ..+|+|+|+|+. ++.+.++|+.++++++++||+|++..+++
T Consensus 67 ~~~~vLDiG~G~G~~~~~l----~~~v~~~D~s~~----------------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 126 (215)
T 2zfu_A 67 ASLVVADFGCGDCRLASSI----RNPVHCFDLASL----------------DPRVTVCDMAQVPLEDESVDVAVFCLSLM 126 (215)
T ss_dssp TTSCEEEETCTTCHHHHHC----CSCEEEEESSCS----------------STTEEESCTTSCSCCTTCEEEEEEESCCC
T ss_pred CCCeEEEECCcCCHHHHHh----hccEEEEeCCCC----------------CceEEEeccccCCCCCCCEeEEEEehhcc
Confidence 3789999999999998777 368999999985 46789999999888889999999999997
Q ss_pred CcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEEE
Q 017428 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAE 317 (371)
Q Consensus 238 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~ 317 (371)
+ .++..+++++.++|+|||.+++.++... +.+.+++.++|+++||+++...
T Consensus 127 ~-~~~~~~l~~~~~~L~~gG~l~i~~~~~~----------------------------~~~~~~~~~~l~~~Gf~~~~~~ 177 (215)
T 2zfu_A 127 G-TNIRDFLEEANRVLKPGGLLKVAEVSSR----------------------------FEDVRTFLRAVTKLGFKIVSKD 177 (215)
T ss_dssp S-SCHHHHHHHHHHHEEEEEEEEEEECGGG----------------------------CSCHHHHHHHHHHTTEEEEEEE
T ss_pred c-cCHHHHHHHHHHhCCCCeEEEEEEcCCC----------------------------CCCHHHHHHHHHHCCCEEEEEe
Confidence 5 8999999999999999999999874310 2278999999999999988865
Q ss_pred ec
Q 017428 318 DW 319 (371)
Q Consensus 318 ~~ 319 (371)
..
T Consensus 178 ~~ 179 (215)
T 2zfu_A 178 LT 179 (215)
T ss_dssp CC
T ss_pred cC
Confidence 43
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.69 E-value=4.3e-16 Score=135.98 Aligned_cols=104 Identities=21% Similarity=0.233 Sum_probs=90.6
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCccceEEcccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWSMES 235 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~v~~~~~ 235 (371)
+.+|||||||+|.++..+++.. +.+|+|+|+|+.+++.|++++...++ +++.++.+|+.+++ +++++||+|+++..
T Consensus 42 ~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~ 120 (214)
T 1yzh_A 42 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV-PNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 120 (214)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-SSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCC-CCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence 6899999999999999999987 67999999999999999999998887 68999999998876 67789999998865
Q ss_pred ccCcC--------CHHHHHHHHHHhcCCCcEEEEEe
Q 017428 236 GEHMP--------DKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 236 l~~~~--------~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
..+.. ....+++++.++|+|||.+++..
T Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (214)
T 1yzh_A 121 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 156 (214)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred CCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEe
Confidence 43322 12579999999999999999865
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.7e-16 Score=137.42 Aligned_cols=126 Identities=21% Similarity=0.163 Sum_probs=106.4
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
++.+|||+|||+|.++..+++....+|+|+|+|+.+++.|++++...++. ++.+..+|+.+.. +++||+|++...++
T Consensus 60 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~--~~~fD~i~~~~~~~ 136 (205)
T 3grz_A 60 KPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIY-DIALQKTSLLADV--DGKFDLIVANILAE 136 (205)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC-CCEEEESSTTTTC--CSCEEEEEEESCHH
T ss_pred CCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEeccccccC--CCCceEEEECCcHH
Confidence 37899999999999999988753459999999999999999999988875 4999999997753 58999999987765
Q ss_pred CcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEEE
Q 017428 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAE 317 (371)
Q Consensus 238 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~ 317 (371)
+ ...+++++.++|+|||++++.++... +.+++.++++++||+.+++.
T Consensus 137 ~---~~~~l~~~~~~L~~gG~l~~~~~~~~------------------------------~~~~~~~~~~~~Gf~~~~~~ 183 (205)
T 3grz_A 137 I---LLDLIPQLDSHLNEDGQVIFSGIDYL------------------------------QLPKIEQALAENSFQIDLKM 183 (205)
T ss_dssp H---HHHHGGGSGGGEEEEEEEEEEEEEGG------------------------------GHHHHHHHHHHTTEEEEEEE
T ss_pred H---HHHHHHHHHHhcCCCCEEEEEecCcc------------------------------cHHHHHHHHHHcCCceEEee
Confidence 4 47889999999999999999764311 46778899999999998876
Q ss_pred ec
Q 017428 318 DW 319 (371)
Q Consensus 318 ~~ 319 (371)
..
T Consensus 184 ~~ 185 (205)
T 3grz_A 184 RA 185 (205)
T ss_dssp EE
T ss_pred cc
Confidence 54
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2e-16 Score=148.69 Aligned_cols=146 Identities=16% Similarity=0.249 Sum_probs=111.0
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
..+|||||||+|.++..+++.+ +.+++++|+ +.+++.|++ . ++++++.+|+.+ +++ .||+|++..++|
T Consensus 189 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~d~~~-~~p--~~D~v~~~~~lh 257 (352)
T 1fp2_A 189 LESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSG------S-NNLTYVGGDMFT-SIP--NADAVLLKYILH 257 (352)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------B-TTEEEEECCTTT-CCC--CCSEEEEESCGG
T ss_pred CceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhccc------C-CCcEEEeccccC-CCC--CccEEEeehhhc
Confidence 6899999999999999999987 679999999 999987764 2 469999999976 555 399999999999
Q ss_pred CcCCHH--HHHHHHHHhcCC---CcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCc
Q 017428 238 HMPDKS--KFVSELARVTAP---AGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLE 312 (371)
Q Consensus 238 ~~~~~~--~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~ 312 (371)
|+++.. .++++++++||| ||+|++.+...+...... .. ......+........ ...++.++|.++|+++||+
T Consensus 258 ~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~-~~-~~~~~~~d~~~~~~~-g~~~t~~e~~~ll~~aGf~ 334 (352)
T 1fp2_A 258 NWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDEN-QV-TQIKLLMDVNMACLN-GKERNEEEWKKLFIEAGFQ 334 (352)
T ss_dssp GSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCH-HH-HHHHHHHHHHGGGGT-CCCEEHHHHHHHHHHTTCC
T ss_pred cCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCcc-ch-hhhHhhccHHHHhcc-CCCCCHHHHHHHHHHCCCC
Confidence 998876 999999999999 999999987654322110 00 011111111111111 2246899999999999999
Q ss_pred eEEEEe
Q 017428 313 DIKAED 318 (371)
Q Consensus 313 ~v~~~~ 318 (371)
++++..
T Consensus 335 ~~~~~~ 340 (352)
T 1fp2_A 335 HYKISP 340 (352)
T ss_dssp EEEEEE
T ss_pred eeEEEe
Confidence 988765
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.8e-16 Score=135.03 Aligned_cols=106 Identities=10% Similarity=0.106 Sum_probs=87.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-CCCCccceEEccc-c
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-FPDGQFDLVWSME-S 235 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~v~~~~-~ 235 (371)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++++..++ +++++++.|...++ +.+++||+|+++. .
T Consensus 22 ~~~~vLDiGcG~G~~~~~la~~-~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~~~~~l~~~~~~~fD~v~~~~~~ 99 (185)
T 3mti_A 22 DESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLGI-ENTELILDGHENLDHYVREPIRAAIFNLGY 99 (185)
T ss_dssp TTCEEEESCCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHHTC-CCEEEEESCGGGGGGTCCSCEEEEEEEEC-
T ss_pred CCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCcHHHHHhhccCCcCEEEEeCCC
Confidence 3789999999999999999988 88999999999999999999998888 68999998877643 4468899998773 2
Q ss_pred ccC--------cCCHHHHHHHHHHhcCCCcEEEEEecc
Q 017428 236 GEH--------MPDKSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 236 l~~--------~~~~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
+.+ ..+...+++++.++|||||.+++..+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 137 (185)
T 3mti_A 100 LPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY 137 (185)
T ss_dssp ----------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred CCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence 222 123467889999999999999998754
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.68 E-value=5.6e-16 Score=136.60 Aligned_cols=129 Identities=13% Similarity=0.059 Sum_probs=104.1
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-CCCCCccceEEcccc
Q 017428 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-PFPDGQFDLVWSMES 235 (371)
Q Consensus 158 ~~~~VLDlG~G-tG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~v~~~~~ 235 (371)
++.+|||+||| +|.++..+++..+.+|+|+|+|+.+++.|++++...++ +++++++|+... ++++++||+|+++..
T Consensus 55 ~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~~~fD~I~~npp 132 (230)
T 3evz_A 55 GGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNS--NVRLVKSNGGIIKGVVEGTFDVIFSAPP 132 (230)
T ss_dssp SSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTC--CCEEEECSSCSSTTTCCSCEEEEEECCC
T ss_pred CCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCC--CcEEEeCCchhhhhcccCceeEEEECCC
Confidence 48999999999 99999999987678999999999999999999999886 799999997543 455689999998866
Q ss_pred ccCcCC-------------------HHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCC
Q 017428 236 GEHMPD-------------------KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAW 296 (371)
Q Consensus 236 l~~~~~-------------------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (371)
+++..+ ...+++++.++|||||++++..... .
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-----------------------------~ 183 (230)
T 3evz_A 133 YYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDK-----------------------------E 183 (230)
T ss_dssp CC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESC-----------------------------H
T ss_pred CcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEeccc-----------------------------H
Confidence 654332 4789999999999999999974210 0
Q ss_pred CCHHHHHHHHHhCCCceEEEE
Q 017428 297 CSTADYVKLLQSLSLEDIKAE 317 (371)
Q Consensus 297 ~~~~~~~~ll~~aGF~~v~~~ 317 (371)
...+++.++++++||....+.
T Consensus 184 ~~~~~~~~~l~~~g~~~~~~~ 204 (230)
T 3evz_A 184 KLLNVIKERGIKLGYSVKDIK 204 (230)
T ss_dssp HHHHHHHHHHHHTTCEEEEEE
T ss_pred hHHHHHHHHHHHcCCceEEEE
Confidence 135678889999999766654
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=8.2e-16 Score=139.60 Aligned_cols=140 Identities=15% Similarity=0.218 Sum_probs=112.2
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC
Q 017428 139 VRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA 217 (371)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~ 217 (371)
..+++.++..+. . ++.+|||+|||+|..+..++..+ +.+|+|+|+|+.+++.|++++...+++ ++.++++|+
T Consensus 96 e~l~~~~l~~~~-~-----~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~-~v~~~~~d~ 168 (276)
T 2b3t_A 96 ECLVEQALARLP-E-----QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIK-NIHILQSDW 168 (276)
T ss_dssp HHHHHHHHHHSC-S-----SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCST
T ss_pred HHHHHHHHHhcc-c-----CCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEEcch
Confidence 345566666654 2 37899999999999999999877 679999999999999999999988875 799999999
Q ss_pred CCCCCCCCccceEEccc-------------cccCcC------------CHHHHHHHHHHhcCCCcEEEEEeccCCCCCcC
Q 017428 218 LQQPFPDGQFDLVWSME-------------SGEHMP------------DKSKFVSELARVTAPAGTIIIVTWCHRDLAPS 272 (371)
Q Consensus 218 ~~~~~~~~~fD~v~~~~-------------~l~~~~------------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~ 272 (371)
.+. +++++||+|+++. +++|.+ +...+++++.++|+|||++++...
T Consensus 169 ~~~-~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~-------- 239 (276)
T 2b3t_A 169 FSA-LAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG-------- 239 (276)
T ss_dssp TGG-GTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC--------
T ss_pred hhh-cccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC--------
Confidence 773 4467899999973 333322 347889999999999999998531
Q ss_pred ccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEEE
Q 017428 273 EESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAE 317 (371)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~ 317 (371)
....+++.++++++||..+++.
T Consensus 240 -----------------------~~~~~~~~~~l~~~Gf~~v~~~ 261 (276)
T 2b3t_A 240 -----------------------WQQGEAVRQAFILAGYHDVETC 261 (276)
T ss_dssp -----------------------SSCHHHHHHHHHHTTCTTCCEE
T ss_pred -----------------------chHHHHHHHHHHHCCCcEEEEE
Confidence 2357789999999999877654
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.5e-16 Score=141.46 Aligned_cols=132 Identities=15% Similarity=0.094 Sum_probs=107.6
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC---CCccceEEcc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP---DGQFDLVWSM 233 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~fD~v~~~ 233 (371)
++.+|||||||+|..+..++... +.+|+|+|+|+.+++.|+++++..++. +++++++|+.+++++ +++||+|++.
T Consensus 70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 148 (240)
T 1xdz_A 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLE-NTTFCHDRAETFGQRKDVRESYDIVTAR 148 (240)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEeccHHHhcccccccCCccEEEEe
Confidence 37899999999999999999755 679999999999999999999988874 699999999876643 5789999987
Q ss_pred ccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCce
Q 017428 234 ESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLED 313 (371)
Q Consensus 234 ~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~ 313 (371)
. +.+...+++++.++|+|||++++..... . .. ..+++.+.++++||..
T Consensus 149 ~----~~~~~~~l~~~~~~LkpgG~l~~~~g~~----------~---~~---------------~~~~~~~~l~~~g~~~ 196 (240)
T 1xdz_A 149 A----VARLSVLSELCLPLVKKNGLFVALKAAS----------A---EE---------------ELNAGKKAITTLGGEL 196 (240)
T ss_dssp C----CSCHHHHHHHHGGGEEEEEEEEEEECC-----------C---HH---------------HHHHHHHHHHHTTEEE
T ss_pred c----cCCHHHHHHHHHHhcCCCCEEEEEeCCC----------c---hH---------------HHHHHHHHHHHcCCeE
Confidence 5 4678999999999999999999864110 0 00 1345678899999998
Q ss_pred EEEEecCCc
Q 017428 314 IKAEDWSQN 322 (371)
Q Consensus 314 v~~~~~~~~ 322 (371)
+++..+..+
T Consensus 197 ~~~~~~~~~ 205 (240)
T 1xdz_A 197 ENIHSFKLP 205 (240)
T ss_dssp EEEEEEECT
T ss_pred eEEEEEecC
Confidence 887765444
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.5e-17 Score=143.19 Aligned_cols=148 Identities=14% Similarity=0.111 Sum_probs=105.0
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHH----HHcCCCCCeEEEEcCCCCCCCCCCccceEEc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALA----AARGLADKVSFQVGDALQQPFPDGQFDLVWS 232 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~----~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~ 232 (371)
++.+|||||||+|.++..+++.+ +.+|+|+|+|+.|++.+.+.+ ...++ +++.++++|+.+++++++. |.|+.
T Consensus 27 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~-~~v~~~~~d~~~l~~~~~~-d~v~~ 104 (218)
T 3mq2_A 27 YDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGL-PNLLYLWATAERLPPLSGV-GELHV 104 (218)
T ss_dssp SSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCC-TTEEEEECCSTTCCSCCCE-EEEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCC-CceEEEecchhhCCCCCCC-CEEEE
Confidence 37899999999999999999987 689999999999888643332 23454 4899999999999887666 76663
Q ss_pred c---ccc--cCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCC---CCHHHHHH
Q 017428 233 M---ESG--EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAW---CSTADYVK 304 (371)
Q Consensus 233 ~---~~l--~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 304 (371)
. ..+ +|++++..++++++++|||||.+++............ .....+.+ ...+.+..
T Consensus 105 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~l~~ 169 (218)
T 3mq2_A 105 LMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNLHAWRPSVP---------------EVGEHPEPTPDSADEWLAP 169 (218)
T ss_dssp ESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCG---------------GGTTCCCCCHHHHHHHHHH
T ss_pred EccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEecccccccccc---------------ccccCCccchHHHHHHHHH
Confidence 2 222 2667778999999999999999999542211111000 00011111 12445888
Q ss_pred HHHhCCCceEEEEecCCc
Q 017428 305 LLQSLSLEDIKAEDWSQN 322 (371)
Q Consensus 305 ll~~aGF~~v~~~~~~~~ 322 (371)
+++++||++++++.+...
T Consensus 170 ~l~~aGf~i~~~~~~~~~ 187 (218)
T 3mq2_A 170 RYAEAGWKLADCRYLEPE 187 (218)
T ss_dssp HHHHTTEEEEEEEEECHH
T ss_pred HHHHcCCCceeeeccchh
Confidence 999999999988766543
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.5e-17 Score=144.99 Aligned_cols=153 Identities=15% Similarity=0.090 Sum_probs=100.0
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCC-HHHHHHH---HHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLS-PVQAQRA---NALAAARGLADKVSFQVGDALQQPFPDGQFDLVWS 232 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s-~~~~~~a---~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~ 232 (371)
++.+|||||||+|.++..+++.. +..|+|+|+| +.|++.| ++++...++ +++.+.++|+.++|. ..||.|.+
T Consensus 24 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~-~~v~~~~~d~~~l~~--~~~d~v~~ 100 (225)
T 3p2e_A 24 FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGL-SNVVFVIAAAESLPF--ELKNIADS 100 (225)
T ss_dssp CSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCC-SSEEEECCBTTBCCG--GGTTCEEE
T ss_pred CCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCC-CCeEEEEcCHHHhhh--hccCeEEE
Confidence 37899999999999999999755 6789999999 6666666 777767776 489999999998852 23344443
Q ss_pred cccccCc--------CCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHH
Q 017428 233 MESGEHM--------PDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVK 304 (371)
Q Consensus 233 ~~~l~~~--------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (371)
..+...+ .+...++++++++|||||.+++.......... . ...... .....+.++..+++.+
T Consensus 101 i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~----~----~~~~~~--~~~~~~~~~~~~el~~ 170 (225)
T 3p2e_A 101 ISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSYEE----A----EIKKRG--LPLLSKAYFLSEQYKA 170 (225)
T ss_dssp EEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC------------------------CCHHHHHSHHHHH
T ss_pred EEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccchh----c----hhhhcC--CCCCChhhcchHHHHH
Confidence 3332222 23357899999999999999995432221100 0 000000 0000001112235999
Q ss_pred HHHhCCCceEEEEecCCcc
Q 017428 305 LLQSLSLEDIKAEDWSQNV 323 (371)
Q Consensus 305 ll~~aGF~~v~~~~~~~~~ 323 (371)
+++++||++++.+.+...+
T Consensus 171 ~l~~aGf~v~~~~~~~~~~ 189 (225)
T 3p2e_A 171 ELSNSGFRIDDVKELDNEY 189 (225)
T ss_dssp HHHHHTCEEEEEEEECHHH
T ss_pred HHHHcCCCeeeeeecCHHH
Confidence 9999999999988776543
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.6e-16 Score=139.88 Aligned_cols=120 Identities=18% Similarity=0.253 Sum_probs=100.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC-CCCCCC-CCccceEEcccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA-LQQPFP-DGQFDLVWSMES 235 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~-~~~fD~v~~~~~ 235 (371)
++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++ .++++++++|+ ..++++ +++||+|++.
T Consensus 48 ~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~d~~~~~~~~~~~~fD~v~~~-- 118 (226)
T 3m33_A 48 PQTRVLEAGCGHGPDAARFGPQ-AARWAAYDFSPELLKLARAN------APHADVYEWNGKGELPAGLGAPFGLIVSR-- 118 (226)
T ss_dssp TTCEEEEESCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHH------CTTSEEEECCSCSSCCTTCCCCEEEEEEE--
T ss_pred CCCeEEEeCCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHh------CCCceEEEcchhhccCCcCCCCEEEEEeC--
Confidence 3789999999999999999987 78999999999999999987 25799999999 567777 8899999987
Q ss_pred ccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEE
Q 017428 236 GEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIK 315 (371)
Q Consensus 236 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~ 315 (371)
.++..+++++.++|||||.++... ...+.+++.+.++++||..+.
T Consensus 119 ----~~~~~~l~~~~~~LkpgG~l~~~~-------------------------------~~~~~~~~~~~l~~~Gf~~~~ 163 (226)
T 3m33_A 119 ----RGPTSVILRLPELAAPDAHFLYVG-------------------------------PRLNVPEVPERLAAVGWDIVA 163 (226)
T ss_dssp ----SCCSGGGGGHHHHEEEEEEEEEEE-------------------------------SSSCCTHHHHHHHHTTCEEEE
T ss_pred ----CCHHHHHHHHHHHcCCCcEEEEeC-------------------------------CcCCHHHHHHHHHHCCCeEEE
Confidence 466788999999999999999111 123566789999999999888
Q ss_pred EEecCC
Q 017428 316 AEDWSQ 321 (371)
Q Consensus 316 ~~~~~~ 321 (371)
+.....
T Consensus 164 ~~~~~~ 169 (226)
T 3m33_A 164 EDHVSV 169 (226)
T ss_dssp EEEEEE
T ss_pred EEeeee
Confidence 765443
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.67 E-value=5.5e-16 Score=139.42 Aligned_cols=130 Identities=17% Similarity=0.124 Sum_probs=105.9
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCccceEEccccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWSMESG 236 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~v~~~~~l 236 (371)
+.+|||+|||+|.++..+++....+|+|+|+++.+++.|++++...++.++++++.+|+.+.+ ++.++||+|+++-.+
T Consensus 50 ~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~npPy 129 (259)
T 3lpm_A 50 KGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCNPPY 129 (259)
T ss_dssp CCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEECCCC
T ss_pred CCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEECCCC
Confidence 789999999999999999988655999999999999999999999998888999999998864 457899999997554
Q ss_pred cCc--------------------CCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCC
Q 017428 237 EHM--------------------PDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAW 296 (371)
Q Consensus 237 ~~~--------------------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (371)
... .+...+++.+.++|||||+++++.. .
T Consensus 130 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~-------------------------------~ 178 (259)
T 3lpm_A 130 FATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHR-------------------------------P 178 (259)
T ss_dssp -----------------------HHHHHHHHHHHHHEEEEEEEEEEEC-------------------------------T
T ss_pred CCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEc-------------------------------H
Confidence 332 1235799999999999999999641 1
Q ss_pred CCHHHHHHHHHhCCCceEEEEec
Q 017428 297 CSTADYVKLLQSLSLEDIKAEDW 319 (371)
Q Consensus 297 ~~~~~~~~ll~~aGF~~v~~~~~ 319 (371)
....++...+++.||....+...
T Consensus 179 ~~~~~~~~~l~~~~~~~~~~~~v 201 (259)
T 3lpm_A 179 ERLLDIIDIMRKYRLEPKRIQFV 201 (259)
T ss_dssp TTHHHHHHHHHHTTEEEEEEEEE
T ss_pred HHHHHHHHHHHHCCCceEEEEEe
Confidence 13556777888888887766543
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=5.2e-16 Score=143.47 Aligned_cols=108 Identities=19% Similarity=0.170 Sum_probs=91.3
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcC------CCCCeEEEEcCCCCCC----CC--CC
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARG------LADKVSFQVGDALQQP----FP--DG 225 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~------~~~~v~~~~~d~~~~~----~~--~~ 225 (371)
++.+|||+|||+|.++..+++..+.+|+|+|+|+.+++.|+++....+ ...++.++++|+.+.+ ++ ++
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 113 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQM 113 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTTC
T ss_pred CCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCCC
Confidence 378999999999999999987546799999999999999999887642 1247999999998875 53 45
Q ss_pred ccceEEccccccCc-C---CHHHHHHHHHHhcCCCcEEEEEecc
Q 017428 226 QFDLVWSMESGEHM-P---DKSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 226 ~fD~v~~~~~l~~~-~---~~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
+||+|++..+++++ . +...+++++.++|||||.+++..+.
T Consensus 114 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 157 (313)
T 3bgv_A 114 CFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPN 157 (313)
T ss_dssp CEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred CEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 89999999999887 4 3578999999999999999998753
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.67 E-value=9.8e-16 Score=130.98 Aligned_cols=108 Identities=15% Similarity=0.049 Sum_probs=93.7
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCccceEEcccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWSMES 235 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~v~~~~~ 235 (371)
++.+|||+|||+|.++..++.....+|+|+|+|+.+++.|+++++..++ ++++++++|+.+.+ +++++||+|++...
T Consensus 44 ~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p 122 (189)
T 3p9n_A 44 TGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGL-SGATLRRGAVAAVVAAGTTSPVDLVLADPP 122 (189)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTC-SCEEEEESCHHHHHHHCCSSCCSEEEECCC
T ss_pred CCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC-CceEEEEccHHHHHhhccCCCccEEEECCC
Confidence 3789999999999999988876345899999999999999999999888 68999999998753 44689999999888
Q ss_pred ccCc-CCHHHHHHHHHH--hcCCCcEEEEEeccC
Q 017428 236 GEHM-PDKSKFVSELAR--VTAPAGTIIIVTWCH 266 (371)
Q Consensus 236 l~~~-~~~~~~l~~~~~--~LkpgG~l~i~~~~~ 266 (371)
+++. ++...+++++.+ +|+|||.+++.....
T Consensus 123 ~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~ 156 (189)
T 3p9n_A 123 YNVDSADVDAILAALGTNGWTREGTVAVVERATT 156 (189)
T ss_dssp TTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred CCcchhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence 7765 677899999999 999999999977543
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.9e-16 Score=135.05 Aligned_cols=108 Identities=17% Similarity=0.213 Sum_probs=92.2
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-CCCCccceEEccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-FPDGQFDLVWSME 234 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~v~~~~ 234 (371)
++.+|||+|||+|.++..+++.+ ..+|+|+|+++.+++.|+++++..++.++++++.+|+.+.+ +.+++||+|++..
T Consensus 22 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~ 101 (197)
T 3eey_A 22 EGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFNL 101 (197)
T ss_dssp TTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEEEE
T ss_pred CCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEEcC
Confidence 37899999999999999999986 36999999999999999999999888778999999998775 5568999999876
Q ss_pred cccC---------cCCHHHHHHHHHHhcCCCcEEEEEecc
Q 017428 235 SGEH---------MPDKSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 235 ~l~~---------~~~~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
.+.. ..+...+++++.++|||||++++..+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 141 (197)
T 3eey_A 102 GYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYY 141 (197)
T ss_dssp SBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred CcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEcc
Confidence 5511 113467999999999999999998754
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-15 Score=134.04 Aligned_cols=143 Identities=13% Similarity=0.092 Sum_probs=106.4
Q ss_pred CCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC---CCCCCc
Q 017428 152 SEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ---PFPDGQ 226 (371)
Q Consensus 152 ~~~~~~~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~~~ 226 (371)
...+..|+.+|||+|||+|.++..+++.. ..+|+|+|+++.|++.++++++.. +|+..+..|.... +...+.
T Consensus 71 ~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~---~ni~~V~~d~~~p~~~~~~~~~ 147 (233)
T 4df3_A 71 IELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR---RNIFPILGDARFPEKYRHLVEG 147 (233)
T ss_dssp SCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC---TTEEEEESCTTCGGGGTTTCCC
T ss_pred hhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh---cCeeEEEEeccCccccccccce
Confidence 33444569999999999999999999987 468999999999999998877554 4899999998764 455688
Q ss_pred cceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHH
Q 017428 227 FDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLL 306 (371)
Q Consensus 227 fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 306 (371)
+|+|++. +.+..+...++.++++.|||||++++....... .. . .+.-...++..+.|
T Consensus 148 vDvVf~d--~~~~~~~~~~l~~~~r~LKpGG~lvI~ik~r~~-------------d~---~-----~p~~~~~~~ev~~L 204 (233)
T 4df3_A 148 VDGLYAD--VAQPEQAAIVVRNARFFLRDGGYMLMAIKARSI-------------DV---T-----TEPSEVYKREIKTL 204 (233)
T ss_dssp EEEEEEC--CCCTTHHHHHHHHHHHHEEEEEEEEEEEECCHH-------------HH---H-----TCCCHHHHHHHHHH
T ss_pred EEEEEEe--ccCChhHHHHHHHHHHhccCCCEEEEEEecccC-------------CC---C-----CChHHHHHHHHHHH
Confidence 9998853 445467788999999999999999987532100 00 0 00001223456778
Q ss_pred HhCCCceEEEEecC
Q 017428 307 QSLSLEDIKAEDWS 320 (371)
Q Consensus 307 ~~aGF~~v~~~~~~ 320 (371)
+++||+.++...+.
T Consensus 205 ~~~GF~l~e~i~L~ 218 (233)
T 4df3_A 205 MDGGLEIKDVVHLD 218 (233)
T ss_dssp HHTTCCEEEEEECT
T ss_pred HHCCCEEEEEEccC
Confidence 99999998877643
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.67 E-value=5.2e-16 Score=137.05 Aligned_cols=133 Identities=14% Similarity=0.209 Sum_probs=101.7
Q ss_pred CCCEEEEECCCcChHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC----CCCCCCccceEEc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ----QPFPDGQFDLVWS 232 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~~~~~~~fD~v~~ 232 (371)
++.+|||+|||+|.++..+++.++ .+|+|+|+|+.+++.++++++.. +++.++.+|+.+ .+++ ++||+|+
T Consensus 74 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~-~~~D~v~- 148 (230)
T 1fbn_A 74 RDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANKPQEYANIV-EKVDVIY- 148 (230)
T ss_dssp TTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTCGGGGTTTS-CCEEEEE-
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC---CCeEEEECCCCCcccccccC-ccEEEEE-
Confidence 488999999999999999999863 79999999999999999886543 589999999988 6665 7899998
Q ss_pred cccccCcCCH---HHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhC
Q 017428 233 MESGEHMPDK---SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSL 309 (371)
Q Consensus 233 ~~~l~~~~~~---~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~a 309 (371)
++++++ ..+++++.++|||||++++. +..... +. . .. ...+ ..+++. +|+++
T Consensus 149 ----~~~~~~~~~~~~l~~~~~~LkpgG~l~i~-~~~~~~-~~--~-~~-~~~~--------------~~~~l~-~l~~~ 203 (230)
T 1fbn_A 149 ----EDVAQPNQAEILIKNAKWFLKKGGYGMIA-IKARSI-DV--T-KD-PKEI--------------FKEQKE-ILEAG 203 (230)
T ss_dssp ----ECCCSTTHHHHHHHHHHHHEEEEEEEEEE-EEGGGT-CS--S-SC-HHHH--------------HHHHHH-HHHHH
T ss_pred ----EecCChhHHHHHHHHHHHhCCCCcEEEEE-EecCCC-CC--C-CC-HHHh--------------hHHHHH-HHHHC
Confidence 345555 77899999999999999997 321110 00 0 00 0011 236677 89999
Q ss_pred CCceEEEEecC
Q 017428 310 SLEDIKAEDWS 320 (371)
Q Consensus 310 GF~~v~~~~~~ 320 (371)
||+.++.....
T Consensus 204 Gf~~~~~~~~~ 214 (230)
T 1fbn_A 204 GFKIVDEVDIE 214 (230)
T ss_dssp TEEEEEEEECT
T ss_pred CCEEEEEEccC
Confidence 99998877643
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.66 E-value=1e-15 Score=130.63 Aligned_cols=118 Identities=14% Similarity=0.153 Sum_probs=99.5
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCC-CeEEEEcCCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLAD-KVSFQVGDALQ 219 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~-~v~~~~~d~~~ 219 (371)
..+.++..+...+ +.+|||+|||+|.++..+++. +.+|+|+|+++.+++.+++++...++.+ ++.+..+|+.+
T Consensus 40 ~~~~l~~~~~~~~-----~~~vLdiG~G~G~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~ 113 (194)
T 1dus_A 40 GTKILVENVVVDK-----DDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE 113 (194)
T ss_dssp HHHHHHHHCCCCT-----TCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT
T ss_pred HHHHHHHHcccCC-----CCeEEEeCCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhc
Confidence 3445556665543 789999999999999999987 8899999999999999999999888743 49999999987
Q ss_pred CCCCCCccceEEccccccC-cCCHHHHHHHHHHhcCCCcEEEEEecc
Q 017428 220 QPFPDGQFDLVWSMESGEH-MPDKSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 220 ~~~~~~~fD~v~~~~~l~~-~~~~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
. +++++||+|++...+++ ..+...+++++.++|+|||.+++....
T Consensus 114 ~-~~~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 159 (194)
T 1dus_A 114 N-VKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQT 159 (194)
T ss_dssp T-CTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred c-cccCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEECC
Confidence 4 45688999999888876 356689999999999999999998753
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.66 E-value=7.3e-16 Score=134.49 Aligned_cols=104 Identities=22% Similarity=0.172 Sum_probs=89.2
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCccceEEcccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWSMES 235 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~v~~~~~ 235 (371)
+.+|||||||+|.++..+++.+ +.+|+|+|+|+.+++.|++++...++ +|+.++.+|+.+++ +++++||.|++...
T Consensus 39 ~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~-~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~ 117 (213)
T 2fca_A 39 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEA-QNVKLLNIDADTLTDVFEPGEVKRVYLNFS 117 (213)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCC-SSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCC-CCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence 6799999999999999999987 68999999999999999999998887 57999999998865 66789999987654
Q ss_pred ccCcCC--------HHHHHHHHHHhcCCCcEEEEEe
Q 017428 236 GEHMPD--------KSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 236 l~~~~~--------~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
..+... ...+++++.++|||||.|++..
T Consensus 118 ~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t 153 (213)
T 2fca_A 118 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 153 (213)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred CCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEe
Confidence 332221 2678999999999999999975
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.9e-16 Score=146.97 Aligned_cols=124 Identities=14% Similarity=0.216 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHH-------HHcCC-CC
Q 017428 138 QVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGA-KCQGITLSPVQAQRANALA-------AARGL-AD 208 (371)
Q Consensus 138 ~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~-------~~~~~-~~ 208 (371)
....+..++..+.+.+ +.+|||||||+|.+++.++...++ +|+|||+|+.+++.|+++. +..|+ ..
T Consensus 158 ~~~~i~~il~~l~l~~-----gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~ 232 (438)
T 3uwp_A 158 SFDLVAQMIDEIKMTD-----DDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHA 232 (438)
T ss_dssp HHHHHHHHHHHHCCCT-----TCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCC
T ss_pred CHHHHHHHHHhcCCCC-----CCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3456777788777765 899999999999999999987765 5999999999999998754 33455 26
Q ss_pred CeEEEEcCCCCCCCCC--CccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCC
Q 017428 209 KVSFQVGDALQQPFPD--GQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHR 267 (371)
Q Consensus 209 ~v~~~~~d~~~~~~~~--~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 267 (371)
+++|+++|+.++++.+ ..||+|+++..+ +.++....|.+++++|||||+|++.+...+
T Consensus 233 rVefi~GD~~~lp~~d~~~~aDVVf~Nn~~-F~pdl~~aL~Ei~RvLKPGGrIVssE~f~p 292 (438)
T 3uwp_A 233 EYTLERGDFLSEEWRERIANTSVIFVNNFA-FGPEVDHQLKERFANMKEGGRIVSSKPFAP 292 (438)
T ss_dssp EEEEEECCTTSHHHHHHHHTCSEEEECCTT-CCHHHHHHHHHHHTTSCTTCEEEESSCSSC
T ss_pred CeEEEECcccCCccccccCCccEEEEcccc-cCchHHHHHHHHHHcCCCCcEEEEeecccC
Confidence 8999999999987643 479999987665 457888899999999999999999875443
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=9.6e-16 Score=130.64 Aligned_cols=131 Identities=22% Similarity=0.321 Sum_probs=106.1
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC
Q 017428 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF 222 (371)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 222 (371)
..++..+...+ +.+|||+|||+|.++..+++.. .+|+++|+++.+++.+++++...++.+++.+..+|+.+ ++
T Consensus 23 ~~~~~~~~~~~-----~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~ 95 (192)
T 1l3i_A 23 CLIMCLAEPGK-----NDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE-AL 95 (192)
T ss_dssp HHHHHHHCCCT-----TCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH-HH
T ss_pred HHHHHhcCCCC-----CCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH-hc
Confidence 33444455543 7899999999999999999875 89999999999999999999988876789999999876 23
Q ss_pred CC-CccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHH
Q 017428 223 PD-GQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTAD 301 (371)
Q Consensus 223 ~~-~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (371)
+. ++||+|++..+++ +...+++++.++|+|||.+++..... .+..+
T Consensus 96 ~~~~~~D~v~~~~~~~---~~~~~l~~~~~~l~~gG~l~~~~~~~------------------------------~~~~~ 142 (192)
T 1l3i_A 96 CKIPDIDIAVVGGSGG---ELQEILRIIKDKLKPGGRIIVTAILL------------------------------ETKFE 142 (192)
T ss_dssp TTSCCEEEEEESCCTT---CHHHHHHHHHHTEEEEEEEEEEECBH------------------------------HHHHH
T ss_pred ccCCCCCEEEECCchH---HHHHHHHHHHHhcCCCcEEEEEecCc------------------------------chHHH
Confidence 33 5899999987764 46889999999999999999976321 02456
Q ss_pred HHHHHHhCCCce
Q 017428 302 YVKLLQSLSLED 313 (371)
Q Consensus 302 ~~~ll~~aGF~~ 313 (371)
+.+++++.||..
T Consensus 143 ~~~~l~~~g~~~ 154 (192)
T 1l3i_A 143 AMECLRDLGFDV 154 (192)
T ss_dssp HHHHHHHTTCCC
T ss_pred HHHHHHHCCCce
Confidence 788999999943
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=7.2e-16 Score=137.68 Aligned_cols=164 Identities=13% Similarity=0.161 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCc--ChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEE
Q 017428 137 AQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGI--GGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSF 212 (371)
Q Consensus 137 ~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~Gt--G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~ 212 (371)
..+.++.+.++.+.... ...+|||||||+ +..+..+++.. +++|+++|.|+.|++.|++++...+ ..++.|
T Consensus 61 ~nr~fl~rav~~l~~~~----g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~-~~~~~~ 135 (277)
T 3giw_A 61 ANRDWMNRAVAHLAKEA----GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP-EGRTAY 135 (277)
T ss_dssp HHHHHHHHHHHHHHHTS----CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS-SSEEEE
T ss_pred HHHHHHHHHHHHhcccc----CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC-CCcEEE
Confidence 33455555555543211 146899999997 44555655543 6899999999999999999886432 247999
Q ss_pred EEcCCCCCC----CC--CCccc-----eEEccccccCcCC---HHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccCh
Q 017428 213 QVGDALQQP----FP--DGQFD-----LVWSMESGEHMPD---KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQP 278 (371)
Q Consensus 213 ~~~d~~~~~----~~--~~~fD-----~v~~~~~l~~~~~---~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~ 278 (371)
+++|+.+.+ .+ .+.|| .|+++.+|||+++ +..+++++++.|+|||+|++.+.+.+... .
T Consensus 136 v~aD~~~~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~p---~---- 208 (277)
T 3giw_A 136 VEADMLDPASILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFAP---Q---- 208 (277)
T ss_dssp EECCTTCHHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTSH---H----
T ss_pred EEecccChhhhhcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCCH---H----
Confidence 999998852 11 34566 5888999999987 57899999999999999999987654211 0
Q ss_pred HHHHHHHHHhhccCCC-CCCCHHHHHHHHHhCCCceEE
Q 017428 279 WEQELLKKICDAYYLP-AWCSTADYVKLLQSLSLEDIK 315 (371)
Q Consensus 279 ~~~~~~~~~~~~~~~~-~~~~~~~~~~ll~~aGF~~v~ 315 (371)
.. ..+.......+.+ .+.+.+++..+|. ||+.++
T Consensus 209 ~~-~~~~~~~~~~g~p~~~rs~~ei~~~f~--Glelve 243 (277)
T 3giw_A 209 EV-GRVAREYAARNMPMRLRTHAEAEEFFE--GLELVE 243 (277)
T ss_dssp HH-HHHHHHHHHTTCCCCCCCHHHHHHTTT--TSEECT
T ss_pred HH-HHHHHHHHhcCCCCccCCHHHHHHHhC--CCcccC
Confidence 01 1112222222222 3679999999994 999654
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.65 E-value=1e-15 Score=137.12 Aligned_cols=136 Identities=18% Similarity=0.284 Sum_probs=112.6
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 017428 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (371)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (371)
..++..+.+.+ +.+|||+|||+|.++..+++.. +.+|+++|+++.+++.|+++++..++++++++..+|+.+.
T Consensus 83 ~~i~~~~~~~~-----~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 157 (255)
T 3mb5_A 83 ALIVAYAGISP-----GDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG 157 (255)
T ss_dssp HHHHHHTTCCT-----TCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC
T ss_pred HHHHHhhCCCC-----CCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhc
Confidence 34555665554 8899999999999999999984 6899999999999999999999999877799999999864
Q ss_pred CCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHH
Q 017428 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTA 300 (371)
Q Consensus 221 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (371)
+++++||+|++ +.+++..+++++.++|+|||.+++...+. ...+
T Consensus 158 -~~~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~~~------------------------------~~~~ 201 (255)
T 3mb5_A 158 -IEEENVDHVIL-----DLPQPERVVEHAAKALKPGGFFVAYTPCS------------------------------NQVM 201 (255)
T ss_dssp -CCCCSEEEEEE-----CSSCGGGGHHHHHHHEEEEEEEEEEESSH------------------------------HHHH
T ss_pred -cCCCCcCEEEE-----CCCCHHHHHHHHHHHcCCCCEEEEEECCH------------------------------HHHH
Confidence 66788999987 45677889999999999999999976321 0245
Q ss_pred HHHHHHHhCC--CceEEEEec
Q 017428 301 DYVKLLQSLS--LEDIKAEDW 319 (371)
Q Consensus 301 ~~~~ll~~aG--F~~v~~~~~ 319 (371)
++.+.++++| |..+++...
T Consensus 202 ~~~~~l~~~g~~f~~~~~~e~ 222 (255)
T 3mb5_A 202 RLHEKLREFKDYFMKPRTINV 222 (255)
T ss_dssp HHHHHHHHTGGGBSCCEEECC
T ss_pred HHHHHHHHcCCCccccEEEEE
Confidence 6778899999 988876543
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.5e-15 Score=131.89 Aligned_cols=112 Identities=17% Similarity=0.181 Sum_probs=97.3
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (371)
....++..+.+.+ +.+|||+|||+|.++..+++. +.+|+++|+++.+++.|++++...+++ ++++..+|+.+.
T Consensus 65 ~~~~~~~~l~~~~-----~~~vLdiG~G~G~~~~~la~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~ 137 (210)
T 3lbf_A 65 MVARMTELLELTP-----QSRVLEIGTGSGYQTAILAHL-VQHVCSVERIKGLQWQARRRLKNLDLH-NVSTRHGDGWQG 137 (210)
T ss_dssp HHHHHHHHTTCCT-----TCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGC
T ss_pred HHHHHHHhcCCCC-----CCEEEEEcCCCCHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCC-ceEEEECCcccC
Confidence 4455566666554 899999999999999999998 789999999999999999999988875 799999999887
Q ss_pred CCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEecc
Q 017428 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 221 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
..++++||+|++..+++++++ ++.++|||||++++....
T Consensus 138 ~~~~~~~D~i~~~~~~~~~~~------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 138 WQARAPFDAIIVTAAPPEIPT------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp CGGGCCEEEEEESSBCSSCCT------HHHHTEEEEEEEEEEECS
T ss_pred CccCCCccEEEEccchhhhhH------HHHHhcccCcEEEEEEcC
Confidence 656789999999999999876 588999999999997643
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=4e-16 Score=136.57 Aligned_cols=104 Identities=19% Similarity=0.248 Sum_probs=88.7
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C--CCCCccceEEccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P--FPDGQFDLVWSME 234 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~--~~~~~fD~v~~~~ 234 (371)
+.+|||||||+|.++..+++.. +..|+|+|+|+.+++.|++++...++ .|+.++.+|+.+. + +++++||.|++..
T Consensus 35 ~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l-~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 35 APVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGL-SNLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTC-SSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCC-CcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 6799999999999999999987 67899999999999999999998887 4799999998874 3 6789999999875
Q ss_pred cccCcCCH--------HHHHHHHHHhcCCCcEEEEEe
Q 017428 235 SGEHMPDK--------SKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 235 ~l~~~~~~--------~~~l~~~~~~LkpgG~l~i~~ 263 (371)
...+.... ..+++++.++|||||.+++..
T Consensus 114 ~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~t 150 (218)
T 3dxy_A 114 PDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMAT 150 (218)
T ss_dssp CCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEe
Confidence 44332221 259999999999999999976
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.2e-15 Score=128.37 Aligned_cols=120 Identities=13% Similarity=0.067 Sum_probs=99.8
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 238 (371)
+.+|||+|||+|.++..+++. + +|+|+|+|+.+++. .++++++++|+.+ ++++++||+|+++..+++
T Consensus 24 ~~~vLD~GcG~G~~~~~l~~~-~-~v~gvD~s~~~~~~----------~~~~~~~~~d~~~-~~~~~~fD~i~~n~~~~~ 90 (170)
T 3q87_B 24 MKIVLDLGTSTGVITEQLRKR-N-TVVSTDLNIRALES----------HRGGNLVRADLLC-SINQESVDVVVFNPPYVP 90 (170)
T ss_dssp SCEEEEETCTTCHHHHHHTTT-S-EEEEEESCHHHHHT----------CSSSCEEECSTTT-TBCGGGCSEEEECCCCBT
T ss_pred CCeEEEeccCccHHHHHHHhc-C-cEEEEECCHHHHhc----------ccCCeEEECChhh-hcccCCCCEEEECCCCcc
Confidence 679999999999999999987 4 99999999999987 2578999999988 566689999999988876
Q ss_pred cCCH---------HHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhC
Q 017428 239 MPDK---------SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSL 309 (371)
Q Consensus 239 ~~~~---------~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~a 309 (371)
..+. ..+++++.+.| |||++++.... ....+++.++++++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~------------------------------~~~~~~l~~~l~~~ 139 (170)
T 3q87_B 91 DTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIE------------------------------ANRPKEVLARLEER 139 (170)
T ss_dssp TCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEG------------------------------GGCHHHHHHHHHHT
T ss_pred CCccccccCCcchHHHHHHHHhhC-CCCEEEEEEec------------------------------CCCHHHHHHHHHHC
Confidence 5443 57889999999 99999997732 12577889999999
Q ss_pred CCceEEEEecCCc
Q 017428 310 SLEDIKAEDWSQN 322 (371)
Q Consensus 310 GF~~v~~~~~~~~ 322 (371)
||+.+.+......
T Consensus 140 gf~~~~~~~~~~~ 152 (170)
T 3q87_B 140 GYGTRILKVRKIL 152 (170)
T ss_dssp TCEEEEEEEEECS
T ss_pred CCcEEEEEeeccC
Confidence 9998887654443
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.1e-15 Score=126.50 Aligned_cols=132 Identities=17% Similarity=0.151 Sum_probs=108.1
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (371)
+...++..+...+ +.+|||+|||+|.++..+++ .+.+|+|+|+++.+++.+++++...++ +++.++.+|+.+
T Consensus 23 ~~~~~~~~~~~~~-----~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~~d~~~- 94 (183)
T 2yxd_A 23 IRAVSIGKLNLNK-----DDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEVTKQNLAKFNI-KNCQIIKGRAED- 94 (183)
T ss_dssp HHHHHHHHHCCCT-----TCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHHHHHHHHHTTC-CSEEEEESCHHH-
T ss_pred HHHHHHHHcCCCC-----CCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEECCccc-
Confidence 3344555555443 78999999999999999998 478999999999999999999998887 579999999987
Q ss_pred CCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHH
Q 017428 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTA 300 (371)
Q Consensus 221 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (371)
++++++||+|++..+ .+...+++++.++ |||.+++..... ....
T Consensus 95 ~~~~~~~D~i~~~~~----~~~~~~l~~~~~~--~gG~l~~~~~~~------------------------------~~~~ 138 (183)
T 2yxd_A 95 VLDKLEFNKAFIGGT----KNIEKIIEILDKK--KINHIVANTIVL------------------------------ENAA 138 (183)
T ss_dssp HGGGCCCSEEEECSC----SCHHHHHHHHHHT--TCCEEEEEESCH------------------------------HHHH
T ss_pred cccCCCCcEEEECCc----ccHHHHHHHHhhC--CCCEEEEEeccc------------------------------ccHH
Confidence 666689999999887 6788999999998 999999987321 0245
Q ss_pred HHHHHHHhCCCceEEE
Q 017428 301 DYVKLLQSLSLEDIKA 316 (371)
Q Consensus 301 ~~~~ll~~aGF~~v~~ 316 (371)
++.+.|+++||.+..+
T Consensus 139 ~~~~~l~~~g~~~~~~ 154 (183)
T 2yxd_A 139 KIINEFESRGYNVDAV 154 (183)
T ss_dssp HHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHcCCeEEEE
Confidence 6788999999875544
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.65 E-value=1e-16 Score=143.72 Aligned_cols=150 Identities=14% Similarity=0.125 Sum_probs=104.9
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC---CCC---CCccceE
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ---PFP---DGQFDLV 230 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~---~~~fD~v 230 (371)
++.+|||+|||+|.++..++... +.+|+|+|+|+.+++.|+++++..++.++++++++|+.+. +++ +++||+|
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i 144 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 144 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence 36799999999999999998876 7899999999999999999999998877799999998662 344 2689999
Q ss_pred EccccccCcC---------------CHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhc-cC--
Q 017428 231 WSMESGEHMP---------------DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDA-YY-- 292 (371)
Q Consensus 231 ~~~~~l~~~~---------------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-- 292 (371)
+++-.+++.. ....++.+++++|||||.+.+.+.. ........... +.
T Consensus 145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~--------------~~~~~~~l~~~g~~~~ 210 (254)
T 2h00_A 145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRI--------------IHDSLQLKKRLRWYSC 210 (254)
T ss_dssp EECCCCC-------------------------CTTTTHHHHTHHHHHHHH--------------HHHHHHHGGGBSCEEE
T ss_pred EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHH--------------HHHHHhcccceEEEEE
Confidence 9985554432 1134678899999999998876421 00111111111 10
Q ss_pred -CCCCCCHHHHHHHHHhCCCceEEEEecCC
Q 017428 293 -LPAWCSTADYVKLLQSLSLEDIKAEDWSQ 321 (371)
Q Consensus 293 -~~~~~~~~~~~~ll~~aGF~~v~~~~~~~ 321 (371)
.......+++.++|+++||+.+++..+..
T Consensus 211 ~~~~~~~~~~~~~~l~~~Gf~~v~~~~~~~ 240 (254)
T 2h00_A 211 MLGKKCSLAPLKEELRIQGVPKVTYTEFCQ 240 (254)
T ss_dssp EESSTTSHHHHHHHHHHTTCSEEEEEEEEE
T ss_pred CCCChhHHHHHHHHHHHcCCCceEEEEEec
Confidence 01123458899999999999988766543
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.64 E-value=4e-15 Score=149.13 Aligned_cols=105 Identities=22% Similarity=0.296 Sum_probs=92.6
Q ss_pred CCEEEEECCCcChHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHc------CCCCCeEEEEcCCCCCCCCCCccceE
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRANALAAAR------GLADKVSFQVGDALQQPFPDGQFDLV 230 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~------~~~~~v~~~~~d~~~~~~~~~~fD~v 230 (371)
+.+|||||||+|.++..+++..+ .+|+|+|+|+.|++.|++++... ++ .+++|+++|+.++++++++||+|
T Consensus 722 g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl-~nVefiqGDa~dLp~~d~sFDlV 800 (950)
T 3htx_A 722 ASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNV-KSATLYDGSILEFDSRLHDVDIG 800 (950)
T ss_dssp CSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSC-SEEEEEESCTTSCCTTSCSCCEE
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCC-CceEEEECchHhCCcccCCeeEE
Confidence 78999999999999999998752 79999999999999999977643 33 47999999999999888999999
Q ss_pred EccccccCcCCHH--HHHHHHHHhcCCCcEEEEEecc
Q 017428 231 WSMESGEHMPDKS--KFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 231 ~~~~~l~~~~~~~--~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
++..+++|+++.. .++++++++|||| .+++.+..
T Consensus 801 V~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN 836 (950)
T 3htx_A 801 TCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPN 836 (950)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECB
T ss_pred EEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecC
Confidence 9999999998865 5999999999999 77777643
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.7e-15 Score=135.84 Aligned_cols=135 Identities=14% Similarity=0.203 Sum_probs=111.0
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHc-CCCCCeEEEEcCCCC
Q 017428 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAAR-GLADKVSFQVGDALQ 219 (371)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~-~~~~~v~~~~~d~~~ 219 (371)
..++..+.+.+ +.+|||+|||+|.++..+++.+ +.+|+++|+++.+++.|+++++.. + .+++.+..+|+.+
T Consensus 86 ~~~~~~~~~~~-----~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g-~~~v~~~~~d~~~ 159 (258)
T 2pwy_A 86 SAMVTLLDLAP-----GMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ-VENVRFHLGKLEE 159 (258)
T ss_dssp HHHHHHTTCCT-----TCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-CCCEEEEESCGGG
T ss_pred HHHHHHcCCCC-----CCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC-CCCEEEEECchhh
Confidence 45556666554 8899999999999999999985 579999999999999999999887 6 4689999999988
Q ss_pred CCCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCH
Q 017428 220 QPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCST 299 (371)
Q Consensus 220 ~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (371)
.++++++||+|++ +.+++..+++++.++|+|||.+++...+. . ..
T Consensus 160 ~~~~~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~~~---------------~---------------~~ 204 (258)
T 2pwy_A 160 AELEEAAYDGVAL-----DLMEPWKVLEKAALALKPDRFLVAYLPNI---------------T---------------QV 204 (258)
T ss_dssp CCCCTTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEESCH---------------H---------------HH
T ss_pred cCCCCCCcCEEEE-----CCcCHHHHHHHHHHhCCCCCEEEEEeCCH---------------H---------------HH
Confidence 8777789999997 35677789999999999999999987321 0 13
Q ss_pred HHHHHHHHhCCCceEEEEe
Q 017428 300 ADYVKLLQSLSLEDIKAED 318 (371)
Q Consensus 300 ~~~~~ll~~aGF~~v~~~~ 318 (371)
.++.+.|+++||..+++.+
T Consensus 205 ~~~~~~l~~~gf~~~~~~~ 223 (258)
T 2pwy_A 205 LELVRAAEAHPFRLERVLE 223 (258)
T ss_dssp HHHHHHHTTTTEEEEEEEE
T ss_pred HHHHHHHHHCCCceEEEEE
Confidence 4566778889999877654
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=7.1e-16 Score=137.77 Aligned_cols=132 Identities=13% Similarity=0.006 Sum_probs=107.5
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC---CCccceEEcc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP---DGQFDLVWSM 233 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~fD~v~~~ 233 (371)
++.+|||||||+|..++.++..+ +.+|+++|+|+.+++.|+++++..++. +++++++|+++.+.. .++||+|++.
T Consensus 80 ~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~-~v~~~~~d~~~~~~~~~~~~~fD~I~s~ 158 (249)
T 3g89_A 80 GPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLK-GARALWGRAEVLAREAGHREAYARAVAR 158 (249)
T ss_dssp SSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-ceEEEECcHHHhhcccccCCCceEEEEC
Confidence 47899999999999999999876 689999999999999999999999885 699999999876532 4789999986
Q ss_pred ccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCce
Q 017428 234 ESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLED 313 (371)
Q Consensus 234 ~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~ 313 (371)
. +.+...+++.+.++|||||++++..-... .. ...++.+.++..||..
T Consensus 159 a----~~~~~~ll~~~~~~LkpgG~l~~~~g~~~-------------~~---------------e~~~~~~~l~~~G~~~ 206 (249)
T 3g89_A 159 A----VAPLCVLSELLLPFLEVGGAAVAMKGPRV-------------EE---------------ELAPLPPALERLGGRL 206 (249)
T ss_dssp S----SCCHHHHHHHHGGGEEEEEEEEEEECSCC-------------HH---------------HHTTHHHHHHHHTEEE
T ss_pred C----cCCHHHHHHHHHHHcCCCeEEEEEeCCCc-------------HH---------------HHHHHHHHHHHcCCeE
Confidence 4 45778999999999999999998652100 00 1234667788889999
Q ss_pred EEEEecCCc
Q 017428 314 IKAEDWSQN 322 (371)
Q Consensus 314 v~~~~~~~~ 322 (371)
+++..+..+
T Consensus 207 ~~~~~~~~p 215 (249)
T 3g89_A 207 GEVLALQLP 215 (249)
T ss_dssp EEEEEEECT
T ss_pred EEEEEeeCC
Confidence 888877554
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.4e-15 Score=130.28 Aligned_cols=99 Identities=16% Similarity=0.117 Sum_probs=88.2
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
+.+|||+|||+|.++..++..+ +.+|+|+|+|+.+++.+++++...++. ++.+..+|+.+.+ +.++||+|++..
T Consensus 66 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~-~~~~~D~i~~~~--- 140 (207)
T 1jsx_A 66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLE-NIEPVQSRVEEFP-SEPPFDGVISRA--- 140 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCS-SEEEEECCTTTSC-CCSCEEEEECSC---
T ss_pred CCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEecchhhCC-ccCCcCEEEEec---
Confidence 6799999999999999999876 679999999999999999999988874 5999999998865 457899999754
Q ss_pred CcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 238 HMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 238 ~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+.+...+++++.++|+|||++++..
T Consensus 141 -~~~~~~~l~~~~~~L~~gG~l~~~~ 165 (207)
T 1jsx_A 141 -FASLNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp -SSSHHHHHHHHTTSEEEEEEEEEEE
T ss_pred -cCCHHHHHHHHHHhcCCCcEEEEEe
Confidence 3678899999999999999999974
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.7e-15 Score=136.33 Aligned_cols=129 Identities=16% Similarity=0.068 Sum_probs=106.3
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
++.+|||+|||+|.++..+++....+|+|+|+|+.+++.|+++++.+++.++++++++|+.+.+. +++||+|++...
T Consensus 125 ~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~-~~~fD~Vi~~~p-- 201 (278)
T 2frn_A 125 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYV-- 201 (278)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCC--
T ss_pred CCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc-cCCccEEEECCc--
Confidence 37899999999999999999974337999999999999999999999987779999999998765 688999998533
Q ss_pred CcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEE
Q 017428 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIK 315 (371)
Q Consensus 238 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~ 315 (371)
.+...++.++.++|||||++++.+....... .....+.+.+.++++||....
T Consensus 202 --~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~------------------------~~~~~~~i~~~~~~~G~~~~~ 253 (278)
T 2frn_A 202 --VRTHEFIPKALSIAKDGAIIHYHNTVPEKLM------------------------PREPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp --SSGGGGHHHHHHHEEEEEEEEEEEEEEGGGT------------------------TTTTHHHHHHHHHHTTCEEEE
T ss_pred --hhHHHHHHHHHHHCCCCeEEEEEEeeccccc------------------------cccHHHHHHHHHHHcCCeeEE
Confidence 3446789999999999999999886431110 012467788999999998766
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.63 E-value=1e-15 Score=138.89 Aligned_cols=133 Identities=15% Similarity=0.215 Sum_probs=106.9
Q ss_pred HHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHc-CCCCCeEEEEcCCCCC
Q 017428 144 ETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAAR-GLADKVSFQVGDALQQ 220 (371)
Q Consensus 144 ~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~-~~~~~v~~~~~d~~~~ 220 (371)
.++..+.+. ++.+|||+|||+|.++..+++.. +.+|+++|+++.+++.|+++++.. +. +++.+..+|+.+
T Consensus 101 ~~~~~~~~~-----~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~-~~v~~~~~d~~~- 173 (275)
T 1yb2_A 101 YIIMRCGLR-----PGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI-GNVRTSRSDIAD- 173 (275)
T ss_dssp -----CCCC-----TTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC-TTEEEECSCTTT-
T ss_pred HHHHHcCCC-----CcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCC-CcEEEEECchhc-
Confidence 344445444 48899999999999999999874 679999999999999999999887 74 589999999987
Q ss_pred CCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHH
Q 017428 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTA 300 (371)
Q Consensus 221 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (371)
++++++||+|++ +++++..+++++.++|||||++++..... . ..+
T Consensus 174 ~~~~~~fD~Vi~-----~~~~~~~~l~~~~~~LkpgG~l~i~~~~~---------------~---------------~~~ 218 (275)
T 1yb2_A 174 FISDQMYDAVIA-----DIPDPWNHVQKIASMMKPGSVATFYLPNF---------------D---------------QSE 218 (275)
T ss_dssp CCCSCCEEEEEE-----CCSCGGGSHHHHHHTEEEEEEEEEEESSH---------------H---------------HHH
T ss_pred cCcCCCccEEEE-----cCcCHHHHHHHHHHHcCCCCEEEEEeCCH---------------H---------------HHH
Confidence 566788999997 56788899999999999999999987320 0 234
Q ss_pred HHHHHHHhCCCceEEEEe
Q 017428 301 DYVKLLQSLSLEDIKAED 318 (371)
Q Consensus 301 ~~~~ll~~aGF~~v~~~~ 318 (371)
++.+.|+++||..+++..
T Consensus 219 ~~~~~l~~~Gf~~~~~~~ 236 (275)
T 1yb2_A 219 KTVLSLSASGMHHLETVE 236 (275)
T ss_dssp HHHHHSGGGTEEEEEEEE
T ss_pred HHHHHHHHCCCeEEEEEE
Confidence 667788899999887765
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.5e-15 Score=143.07 Aligned_cols=148 Identities=19% Similarity=0.258 Sum_probs=110.5
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ . ++++++.+|+.+ +++ .||+|++..++|
T Consensus 194 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~d~~~-~~~--~~D~v~~~~vlh 262 (358)
T 1zg3_A 194 LESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG------N-ENLNFVGGDMFK-SIP--SADAVLLKWVLH 262 (358)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC------C-SSEEEEECCTTT-CCC--CCSEEEEESCGG
T ss_pred CCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc------C-CCcEEEeCccCC-CCC--CceEEEEccccc
Confidence 6899999999999999999987 678999999 788877653 2 469999999987 655 499999999999
Q ss_pred CcCCHH--HHHHHHHHhcCC---CcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCc
Q 017428 238 HMPDKS--KFVSELARVTAP---AGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLE 312 (371)
Q Consensus 238 ~~~~~~--~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~ 312 (371)
++++.. .++++++++|+| ||+|++.++..+....... . ......+............++.++|.++|+++||+
T Consensus 263 ~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~-~-~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~ 340 (358)
T 1zg3_A 263 DWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRG-L-TELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFS 340 (358)
T ss_dssp GSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHH-H-HHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccch-h-hhHHHhhCHHHhccCCCCCCCHHHHHHHHHHcCCC
Confidence 999876 999999999999 9999999876543221100 0 01111111100000011246899999999999999
Q ss_pred eEEEEec
Q 017428 313 DIKAEDW 319 (371)
Q Consensus 313 ~v~~~~~ 319 (371)
++++...
T Consensus 341 ~~~~~~~ 347 (358)
T 1zg3_A 341 SYKITPI 347 (358)
T ss_dssp EEEEEEE
T ss_pred eeEEEec
Confidence 9988653
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.8e-15 Score=140.08 Aligned_cols=102 Identities=23% Similarity=0.238 Sum_probs=90.5
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccc---
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSME--- 234 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~--- 234 (371)
++.+|||||||+|.++..+++....+|+|+|+|+ +++.|+++++..++.+++.++.+|+.++++++++||+|++..
T Consensus 64 ~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~ 142 (340)
T 2fyt_A 64 KDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGY 142 (340)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCBT
T ss_pred CCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcCchh
Confidence 3789999999999999999887334899999997 999999999999887899999999999888888999999866
Q ss_pred cccCcCCHHHHHHHHHHhcCCCcEEE
Q 017428 235 SGEHMPDKSKFVSELARVTAPAGTII 260 (371)
Q Consensus 235 ~l~~~~~~~~~l~~~~~~LkpgG~l~ 260 (371)
.+.+..+...++.++.++|||||.++
T Consensus 143 ~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 143 FLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp TBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred hccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 45555677889999999999999987
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=6.9e-16 Score=134.15 Aligned_cols=105 Identities=22% Similarity=0.290 Sum_probs=91.2
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
++.+|||+|||+|.++..+++....+|+|+|+|+.+++.++++... .+++.+.++|+.++++++++||+|++..+++
T Consensus 42 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~---~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~ 118 (215)
T 2pxx_A 42 PEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAH---VPQLRWETMDVRKLDFPSASFDVVLEKGTLD 118 (215)
T ss_dssp TTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTT---CTTCEEEECCTTSCCSCSSCEEEEEEESHHH
T ss_pred CCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhccc---CCCcEEEEcchhcCCCCCCcccEEEECcchh
Confidence 3789999999999999999987323899999999999999988753 2479999999999888889999999988886
Q ss_pred CcC---------------CHHHHHHHHHHhcCCCcEEEEEecc
Q 017428 238 HMP---------------DKSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 238 ~~~---------------~~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
++. +...+++++.++|||||.+++.++.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 161 (215)
T 2pxx_A 119 ALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSA 161 (215)
T ss_dssp HHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred hhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCC
Confidence 654 5689999999999999999998853
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.4e-15 Score=134.80 Aligned_cols=124 Identities=19% Similarity=0.277 Sum_probs=103.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
++.+|||+|||+|.+++.+++. +.+|+|+|+++.+++.|++++..+++. +.+..+|+.+. +++++||+|+++...+
T Consensus 120 ~~~~VLDiGcG~G~l~~~la~~-g~~v~gvDi~~~~v~~a~~n~~~~~~~--v~~~~~d~~~~-~~~~~fD~Vv~n~~~~ 195 (254)
T 2nxc_A 120 PGDKVLDLGTGSGVLAIAAEKL-GGKALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEAA-LPFGPFDLLVANLYAE 195 (254)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHHH-GGGCCEEEEEEECCHH
T ss_pred CCCEEEEecCCCcHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChhhc-CcCCCCCEEEECCcHH
Confidence 3789999999999999998886 669999999999999999999988874 89999998763 4467899999875443
Q ss_pred CcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEEE
Q 017428 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAE 317 (371)
Q Consensus 238 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~ 317 (371)
....++.++.++|||||++++..... ...+++.+.++++||+++++.
T Consensus 196 ---~~~~~l~~~~~~LkpgG~lils~~~~------------------------------~~~~~v~~~l~~~Gf~~~~~~ 242 (254)
T 2nxc_A 196 ---LHAALAPRYREALVPGGRALLTGILK------------------------------DRAPLVREAMAGAGFRPLEEA 242 (254)
T ss_dssp ---HHHHHHHHHHHHEEEEEEEEEEEEEG------------------------------GGHHHHHHHHHHTTCEEEEEE
T ss_pred ---HHHHHHHHHHHHcCCCCEEEEEeecc------------------------------CCHHHHHHHHHHCCCEEEEEe
Confidence 34688999999999999999976421 136788999999999998876
Q ss_pred e
Q 017428 318 D 318 (371)
Q Consensus 318 ~ 318 (371)
.
T Consensus 243 ~ 243 (254)
T 2nxc_A 243 A 243 (254)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.6e-16 Score=138.09 Aligned_cols=143 Identities=16% Similarity=0.142 Sum_probs=92.0
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC
Q 017428 139 VRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA 217 (371)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~ 217 (371)
..+++.++..+.... ++.+|||+|||+|.++..+++.. +.+|+|+|+|+.+++.|++++...+. +++++++|+
T Consensus 15 ~~~~~~~~~~l~~~~----~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~ 88 (215)
T 4dzr_A 15 EVLVEEAIRFLKRMP----SGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA--VVDWAAADG 88 (215)
T ss_dssp HHHHHHHHHHHTTCC----TTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC---------------------CCHHHH
T ss_pred HHHHHHHHHHhhhcC----CCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC--ceEEEEcch
Confidence 445666666665411 47899999999999999999987 56999999999999999999887765 788999998
Q ss_pred CCCCCCC-----CccceEEccccccCcCCH--------------------------HHHHHHHHHhcCCCcEEEEEeccC
Q 017428 218 LQQPFPD-----GQFDLVWSMESGEHMPDK--------------------------SKFVSELARVTAPAGTIIIVTWCH 266 (371)
Q Consensus 218 ~~~~~~~-----~~fD~v~~~~~l~~~~~~--------------------------~~~l~~~~~~LkpgG~l~i~~~~~ 266 (371)
.+ ++++ ++||+|+++..+++..+. ..+++++.++|||||++++.+..
T Consensus 89 ~~-~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~- 166 (215)
T 4dzr_A 89 IE-WLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVG- 166 (215)
T ss_dssp HH-HHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECT-
T ss_pred Hh-hhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEEC-
Confidence 77 5454 899999996554332211 67889999999999995555421
Q ss_pred CCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHH--hCCCceEEEEe
Q 017428 267 RDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQ--SLSLEDIKAED 318 (371)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~--~aGF~~v~~~~ 318 (371)
....+.+.++++ ++||..+.+..
T Consensus 167 -----------------------------~~~~~~~~~~l~~~~~gf~~~~~~~ 191 (215)
T 4dzr_A 167 -----------------------------HNQADEVARLFAPWRERGFRVRKVK 191 (215)
T ss_dssp -----------------------------TSCHHHHHHHTGGGGGGTEECCEEE
T ss_pred -----------------------------CccHHHHHHHHHHhhcCCceEEEEE
Confidence 124667788888 89998766543
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=3e-15 Score=140.37 Aligned_cols=103 Identities=25% Similarity=0.252 Sum_probs=91.3
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
++.+|||||||+|.++..+++....+|+|+|+|+ +++.|+++++..++.++++++.+|+.++++++++||+|++..+.+
T Consensus 66 ~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~~ 144 (349)
T 3q7e_A 66 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGY 144 (349)
T ss_dssp TTCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBB
T ss_pred CCCEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEccccc
Confidence 3789999999999999999987334999999995 999999999999998889999999999988889999999876543
Q ss_pred ---CcCCHHHHHHHHHHhcCCCcEEEE
Q 017428 238 ---HMPDKSKFVSELARVTAPAGTIII 261 (371)
Q Consensus 238 ---~~~~~~~~l~~~~~~LkpgG~l~i 261 (371)
+..+...++.++.++|||||+++.
T Consensus 145 ~l~~~~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 145 CLFYESMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp TBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred cccCchhHHHHHHHHHHhCCCCCEEcc
Confidence 447789999999999999999874
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.6e-15 Score=134.24 Aligned_cols=112 Identities=14% Similarity=0.120 Sum_probs=86.9
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ- 219 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~- 219 (371)
.+..++..+.+.+ +.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|++++... .+.....++..
T Consensus 33 ~~~~il~~l~l~~-----g~~VLDlGcGtG~~a~~La~~-g~~V~gvD~S~~ml~~Ar~~~~~~----~v~~~~~~~~~~ 102 (261)
T 3iv6_A 33 DRENDIFLENIVP-----GSTVAVIGASTRFLIEKALER-GASVTVFDFSQRMCDDLAEALADR----CVTIDLLDITAE 102 (261)
T ss_dssp HHHHHHHTTTCCT-----TCEEEEECTTCHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTSSS----CCEEEECCTTSC
T ss_pred HHHHHHHhcCCCC-----cCEEEEEeCcchHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhc----cceeeeeecccc
Confidence 3455666666654 889999999999999999987 789999999999999999986543 12333333222
Q ss_pred -CCCCCCccceEEccccccCcC--CHHHHHHHHHHhcCCCcEEEEEe
Q 017428 220 -QPFPDGQFDLVWSMESGEHMP--DKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 220 -~~~~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
....+++||+|++..+++|+. +...+++++.++| |||.+++..
T Consensus 103 ~~~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~ 148 (261)
T 3iv6_A 103 IPKELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASV 148 (261)
T ss_dssp CCGGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEE
T ss_pred cccccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEe
Confidence 111257899999999999985 4577999999999 999999875
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.3e-15 Score=142.37 Aligned_cols=140 Identities=20% Similarity=0.237 Sum_probs=108.3
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.|++++..+++ +++++.+|+.+.+.++++||+|+++..++
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~-g~~V~gvDis~~al~~A~~n~~~~~~--~v~~~~~D~~~~~~~~~~fD~Ii~npp~~ 309 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARM-GAEVVGVEDDLASVLSLQKGLEANAL--KAQALHSDVDEALTEEARFDIIVTNPPFH 309 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHT-TCEEEEEESBHHHHHHHHHHHHHTTC--CCEEEECSTTTTSCTTCCEEEEEECCCCC
T ss_pred CCCEEEEEeeeCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCC--CeEEEEcchhhccccCCCeEEEEECCchh
Confidence 3789999999999999999987 78999999999999999999998886 48999999998876668999999998888
Q ss_pred C-----cCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCc
Q 017428 238 H-----MPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLE 312 (371)
Q Consensus 238 ~-----~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~ 312 (371)
+ ..+...+++++.++|||||.++++..... .+ ...+..... +++.+ ++.||.
T Consensus 310 ~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~l-------~~----~~~l~~~f~-----------~v~~l-~~~gF~ 366 (381)
T 3dmg_A 310 VGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPFL-------KY----EPLLEEKFG-----------AFQTL-KVAEYK 366 (381)
T ss_dssp TTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTTS-------CH----HHHHHHHHS-----------CCEEE-EESSSE
T ss_pred hcccccHHHHHHHHHHHHHhcCcCcEEEEEEcCCC-------Ch----HHHHHHhhc-----------cEEEE-eCCCEE
Confidence 7 44568899999999999999999763221 11 122222111 12233 778999
Q ss_pred eEEEEecCCcc
Q 017428 313 DIKAEDWSQNV 323 (371)
Q Consensus 313 ~v~~~~~~~~~ 323 (371)
+++...+..+-
T Consensus 367 Vl~a~~~~~~~ 377 (381)
T 3dmg_A 367 VLFAEKRGRHH 377 (381)
T ss_dssp EEEEECC----
T ss_pred EEEEEEecccc
Confidence 99887766553
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.4e-16 Score=130.55 Aligned_cols=103 Identities=11% Similarity=0.175 Sum_probs=89.1
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l 236 (371)
++.+|||+|||+|.++..++... +++|+++|+|+.|++.+++++...|+..++++ .|.... .+.++||+|++..++
T Consensus 49 ~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~-~~~~~~DvVLa~k~L 125 (200)
T 3fzg_A 49 HVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESD-VYKGTYDVVFLLKML 125 (200)
T ss_dssp CCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHH-HTTSEEEEEEEETCH
T ss_pred CCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--eccccc-CCCCCcChhhHhhHH
Confidence 37899999999999999998765 67999999999999999999999998656766 565443 356889999999999
Q ss_pred cCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 237 EHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 237 ~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
|++.+.+..+.++++.|+|||.++-..
T Consensus 126 HlL~~~~~al~~v~~~L~pggvfISfp 152 (200)
T 3fzg_A 126 PVLKQQDVNILDFLQLFHTQNFVISFP 152 (200)
T ss_dssp HHHHHTTCCHHHHHHTCEEEEEEEEEE
T ss_pred HhhhhhHHHHHHHHHHhCCCCEEEEeC
Confidence 999666778889999999999988776
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.60 E-value=2.7e-15 Score=131.61 Aligned_cols=106 Identities=18% Similarity=0.255 Sum_probs=90.2
Q ss_pred CCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C-CC----CCccceE
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P-FP----DGQFDLV 230 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~~----~~~fD~v 230 (371)
+.+|||||||+|..+..+++.+ +.+|+++|+++.+++.|+++++..++.++++++++|+.+. + +. .++||+|
T Consensus 59 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V 138 (221)
T 3u81_A 59 PSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMV 138 (221)
T ss_dssp CSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSEE
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEEE
Confidence 7899999999999999999865 6799999999999999999999999877899999997552 2 22 2689999
Q ss_pred EccccccCcCCHHHHHHHHHHhcCCCcEEEEEecc
Q 017428 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
++....++..+...++..+ ++|||||.|++.+..
T Consensus 139 ~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~~~~ 172 (221)
T 3u81_A 139 FLDHWKDRYLPDTLLLEKC-GLLRKGTVLLADNVI 172 (221)
T ss_dssp EECSCGGGHHHHHHHHHHT-TCCCTTCEEEESCCC
T ss_pred EEcCCcccchHHHHHHHhc-cccCCCeEEEEeCCC
Confidence 9988777776666778777 999999999986543
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.60 E-value=9.2e-15 Score=129.19 Aligned_cols=104 Identities=22% Similarity=0.264 Sum_probs=90.6
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C-CCCCccceEEcccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P-FPDGQFDLVWSMES 235 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~~~~~fD~v~~~~~ 235 (371)
+.+|||||||+|..+..+++.. +.+|+++|+++.+++.|+++++..++.++++++.+|+.+. + ..+++||+|++...
T Consensus 72 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~~ 151 (232)
T 3ntv_A 72 VKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFIDAA 151 (232)
T ss_dssp CCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEETT
T ss_pred CCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEcCc
Confidence 7899999999999999999955 7899999999999999999999999877999999999774 3 23689999997643
Q ss_pred ccCcCCHHHHHHHHHHhcCCCcEEEEEecc
Q 017428 236 GEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 236 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
..+...+++++.++|||||+|++.+..
T Consensus 152 ---~~~~~~~l~~~~~~LkpgG~lv~d~~~ 178 (232)
T 3ntv_A 152 ---KAQSKKFFEIYTPLLKHQGLVITDNVL 178 (232)
T ss_dssp ---SSSHHHHHHHHGGGEEEEEEEEEECTT
T ss_pred ---HHHHHHHHHHHHHhcCCCeEEEEeeCC
Confidence 456788999999999999999886543
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.3e-14 Score=129.45 Aligned_cols=104 Identities=21% Similarity=0.288 Sum_probs=89.8
Q ss_pred CCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-CCC--CCccceEEcc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-PFP--DGQFDLVWSM 233 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~--~~~fD~v~~~ 233 (371)
+.+|||||||+|..+..+++.+ +.+|+++|+++.+++.|+++++..++.++++++.+|+.+. +.. .++||+|++.
T Consensus 64 ~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~d 143 (248)
T 3tfw_A 64 AKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIFID 143 (248)
T ss_dssp CSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEEEC
T ss_pred CCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEEC
Confidence 7899999999999999999976 5799999999999999999999999988999999998662 322 3589999986
Q ss_pred ccccCcCCHHHHHHHHHHhcCCCcEEEEEecc
Q 017428 234 ESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 234 ~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
. ...+...+++++.++|||||+|++.+..
T Consensus 144 ~---~~~~~~~~l~~~~~~LkpGG~lv~~~~~ 172 (248)
T 3tfw_A 144 A---DKPNNPHYLRWALRYSRPGTLIIGDNVV 172 (248)
T ss_dssp S---CGGGHHHHHHHHHHTCCTTCEEEEECCS
T ss_pred C---chHHHHHHHHHHHHhcCCCeEEEEeCCC
Confidence 5 3456678999999999999999987654
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.60 E-value=5.8e-15 Score=134.04 Aligned_cols=135 Identities=20% Similarity=0.268 Sum_probs=110.4
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 017428 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (371)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (371)
..++..+.+.+ +.+|||+|||+|.++..+++.+ +.+|+++|+++.+++.|+++++..++.+++.+..+|+.+.
T Consensus 102 ~~i~~~~~~~~-----~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 176 (277)
T 1o54_A 102 SFIAMMLDVKE-----GDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG 176 (277)
T ss_dssp HHHHHHTTCCT-----TCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC
T ss_pred HHHHHHhCCCC-----CCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc
Confidence 44555666554 8899999999999999999984 5799999999999999999999888767899999999876
Q ss_pred CCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHH
Q 017428 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTA 300 (371)
Q Consensus 221 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (371)
+++++||+|++ +.+++..+++++.++|+|||.+++...+. . ...
T Consensus 177 -~~~~~~D~V~~-----~~~~~~~~l~~~~~~L~pgG~l~~~~~~~---------------~---------------~~~ 220 (277)
T 1o54_A 177 -FDEKDVDALFL-----DVPDPWNYIDKCWEALKGGGRFATVCPTT---------------N---------------QVQ 220 (277)
T ss_dssp -CSCCSEEEEEE-----CCSCGGGTHHHHHHHEEEEEEEEEEESSH---------------H---------------HHH
T ss_pred -ccCCccCEEEE-----CCcCHHHHHHHHHHHcCCCCEEEEEeCCH---------------H---------------HHH
Confidence 56678999997 34677789999999999999999987321 0 134
Q ss_pred HHHHHHHhCCCceEEEEe
Q 017428 301 DYVKLLQSLSLEDIKAED 318 (371)
Q Consensus 301 ~~~~ll~~aGF~~v~~~~ 318 (371)
++.+.|+++||..+++..
T Consensus 221 ~~~~~l~~~gf~~~~~~~ 238 (277)
T 1o54_A 221 ETLKKLQELPFIRIEVWE 238 (277)
T ss_dssp HHHHHHHHSSEEEEEEEC
T ss_pred HHHHHHHHCCCceeEEEE
Confidence 566778889999877653
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.9e-14 Score=130.88 Aligned_cols=134 Identities=13% Similarity=0.079 Sum_probs=100.3
Q ss_pred CCEEEEECCCcChHHHHHHHHcCC-EEEEEeC-CHHHHHHHHHHH-----HHcCCC----CCeEEEEcCCCCCC--C---
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGA-KCQGITL-SPVQAQRANALA-----AARGLA----DKVSFQVGDALQQP--F--- 222 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~-~v~gvD~-s~~~~~~a~~~~-----~~~~~~----~~v~~~~~d~~~~~--~--- 222 (371)
+.+|||||||+|.+++.+++. +. +|+|+|+ |+.+++.|++++ +..++. +++.+...|..+.. +
T Consensus 80 ~~~vLDlG~G~G~~~~~~a~~-~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 158 (281)
T 3bzb_A 80 GKTVCELGAGAGLVSIVAFLA-GADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQRC 158 (281)
T ss_dssp TCEEEETTCTTSHHHHHHHHT-TCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHHH
T ss_pred CCeEEEecccccHHHHHHHHc-CCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHhh
Confidence 789999999999999988886 55 9999999 899999999998 555553 47888877765531 2
Q ss_pred -CCCccceEEccccccCcCCHHHHHHHHHHhcC---C--CcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCC
Q 017428 223 -PDGQFDLVWSMESGEHMPDKSKFVSELARVTA---P--AGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAW 296 (371)
Q Consensus 223 -~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk---p--gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (371)
++++||+|++..+++|.++...+++.+.++|+ | ||.++++-..... . + .
T Consensus 159 ~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~-------------~-~-----------~ 213 (281)
T 3bzb_A 159 TGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVTFTHHRP-------------H-L-----------A 213 (281)
T ss_dssp HSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEEECC-------------------------------
T ss_pred ccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEEEEEeeec-------------c-c-----------c
Confidence 35789999999999999999999999999999 9 9998775321100 0 0 0
Q ss_pred CCHHHHHHHHHhCC-CceEEEEe
Q 017428 297 CSTADYVKLLQSLS-LEDIKAED 318 (371)
Q Consensus 297 ~~~~~~~~ll~~aG-F~~v~~~~ 318 (371)
....++.+.++++| |+++.+..
T Consensus 214 ~~~~~~~~~l~~~G~f~v~~~~~ 236 (281)
T 3bzb_A 214 ERDLAFFRLVNADGALIAEPWLS 236 (281)
T ss_dssp --CTHHHHHHHHSTTEEEEEEEC
T ss_pred hhHHHHHHHHHhcCCEEEEEecc
Confidence 12345667889999 99887643
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.60 E-value=5.8e-15 Score=139.83 Aligned_cols=103 Identities=26% Similarity=0.306 Sum_probs=91.6
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l 236 (371)
++.+|||||||+|.++..+++. ++ +|+|+|+| .|++.|+++++.+++.++++++.+|+.+++++ ++||+|++..+.
T Consensus 63 ~~~~VLDlGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Iv~~~~~ 139 (376)
T 3r0q_C 63 EGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLP-EKVDVIISEWMG 139 (376)
T ss_dssp TTCEEEEESCTTTHHHHHHHHT-TCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS-SCEEEEEECCCB
T ss_pred CCCEEEEeccCcCHHHHHHHhc-CCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcC-CcceEEEEcChh
Confidence 4889999999999999999987 55 99999999 99999999999999988899999999998876 899999996655
Q ss_pred cCc---CCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 237 EHM---PDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 237 ~~~---~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+++ .+...+++++.++|||||.+++..
T Consensus 140 ~~l~~e~~~~~~l~~~~~~LkpgG~li~~~ 169 (376)
T 3r0q_C 140 YFLLRESMFDSVISARDRWLKPTGVMYPSH 169 (376)
T ss_dssp TTBTTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred hcccchHHHHHHHHHHHhhCCCCeEEEEec
Confidence 554 457889999999999999998754
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.60 E-value=9.5e-15 Score=127.53 Aligned_cols=126 Identities=13% Similarity=0.081 Sum_probs=105.6
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l 236 (371)
++.+|||||||+|.+++.+++.. ..+|+++|+++.+++.|+++++.+++.+++++..+|..+...+++.||+|++.++.
T Consensus 21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaGmG 100 (230)
T 3lec_A 21 KGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICGMG 100 (230)
T ss_dssp TTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEEC
T ss_pred CCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeCCc
Confidence 37899999999999999999875 35799999999999999999999999888999999998865444579998876544
Q ss_pred cCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEE
Q 017428 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKA 316 (371)
Q Consensus 237 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~ 316 (371)
. .-...++.+..+.|+++|+|++.-. ...+.++++|.+.||.+++.
T Consensus 101 g--~lI~~IL~~~~~~l~~~~~lIlqp~--------------------------------~~~~~lr~~L~~~Gf~i~~E 146 (230)
T 3lec_A 101 G--RLIADILNNDIDKLQHVKTLVLQPN--------------------------------NREDDLRKWLAANDFEIVAE 146 (230)
T ss_dssp H--HHHHHHHHHTGGGGTTCCEEEEEES--------------------------------SCHHHHHHHHHHTTEEEEEE
T ss_pred h--HHHHHHHHHHHHHhCcCCEEEEECC--------------------------------CChHHHHHHHHHCCCEEEEE
Confidence 3 2356789999999999999998641 14677889999999998876
Q ss_pred E
Q 017428 317 E 317 (371)
Q Consensus 317 ~ 317 (371)
.
T Consensus 147 ~ 147 (230)
T 3lec_A 147 D 147 (230)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.59 E-value=5.4e-15 Score=129.64 Aligned_cols=120 Identities=13% Similarity=0.198 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEEE
Q 017428 138 QVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLA-DKVSFQV 214 (371)
Q Consensus 138 ~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~~ 214 (371)
...++..++.....+ ++.+|||||||+|..+..+++.+ +.+|+++|+++.+++.|+++++..++. ++++++.
T Consensus 41 ~~~~l~~l~~~~~~~-----~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~ 115 (221)
T 3dr5_A 41 TGQLLTTLAATTNGN-----GSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLL 115 (221)
T ss_dssp HHHHHHHHHHHSCCT-----TCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEEC
T ss_pred HHHHHHHHHHhhCCC-----CCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEE
Confidence 344555555554422 24599999999999999999976 589999999999999999999999987 7899999
Q ss_pred cCCCCC--CCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEecc
Q 017428 215 GDALQQ--PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 215 ~d~~~~--~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
+|+.+. .+++++||+|++... ..+...+++++.++|||||++++.+..
T Consensus 116 gda~~~l~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~dn~~ 165 (221)
T 3dr5_A 116 SRPLDVMSRLANDSYQLVFGQVS---PMDLKALVDAAWPLLRRGGALVLADAL 165 (221)
T ss_dssp SCHHHHGGGSCTTCEEEEEECCC---TTTHHHHHHHHHHHEEEEEEEEETTTT
T ss_pred cCHHHHHHHhcCCCcCeEEEcCc---HHHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 998764 233689999998643 356678999999999999999996543
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.59 E-value=3e-15 Score=129.31 Aligned_cols=106 Identities=15% Similarity=0.063 Sum_probs=89.3
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEEEcCCCCCC--CCCCc-cceEEccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLA-DKVSFQVGDALQQP--FPDGQ-FDLVWSME 234 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~--~~~~~-fD~v~~~~ 234 (371)
+.+|||+|||+|.++..++.....+|+|+|+|+.+++.|+++++..++. ++++++.+|+.+.. +++++ ||+|++..
T Consensus 54 ~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~ 133 (201)
T 2ift_A 54 QSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLDP 133 (201)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEECC
T ss_pred CCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEECC
Confidence 6899999999999999877764458999999999999999999988874 58999999987642 23578 99999987
Q ss_pred cccCcCCHHHHHHHH--HHhcCCCcEEEEEecc
Q 017428 235 SGEHMPDKSKFVSEL--ARVTAPAGTIIIVTWC 265 (371)
Q Consensus 235 ~l~~~~~~~~~l~~~--~~~LkpgG~l~i~~~~ 265 (371)
.+ +..+...+++.+ .++|+|||.+++....
T Consensus 134 ~~-~~~~~~~~l~~~~~~~~LkpgG~l~i~~~~ 165 (201)
T 2ift_A 134 PF-HFNLAEQAISLLCENNWLKPNALIYVETEK 165 (201)
T ss_dssp CS-SSCHHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred CC-CCccHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 74 356778889999 6789999999987654
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-14 Score=126.77 Aligned_cols=100 Identities=14% Similarity=0.157 Sum_probs=80.2
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC----CCCCCccceEEc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ----PFPDGQFDLVWS 232 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~fD~v~~ 232 (371)
++.+|||+|||+|.++..+++.. ..+|+|+|+|+.|++.+.+..+.. .++.++.+|+... ++. ++||+|++
T Consensus 57 ~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~---~~v~~~~~d~~~~~~~~~~~-~~fD~V~~ 132 (210)
T 1nt2_A 57 GDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER---NNIIPLLFDASKPWKYSGIV-EKVDLIYQ 132 (210)
T ss_dssp SSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC---SSEEEECSCTTCGGGTTTTC-CCEEEEEE
T ss_pred CCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC---CCeEEEEcCCCCchhhcccc-cceeEEEE
Confidence 58899999999999999999886 369999999999887766665543 4799999998773 444 88999998
Q ss_pred cccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 233 MESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 233 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
.. ..+ .+...++++++++|||||++++..
T Consensus 133 ~~-~~~-~~~~~~l~~~~r~LkpgG~l~i~~ 161 (210)
T 1nt2_A 133 DI-AQK-NQIEILKANAEFFLKEKGEVVIMV 161 (210)
T ss_dssp CC-CST-THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ec-cCh-hHHHHHHHHHHHHhCCCCEEEEEE
Confidence 72 222 234456999999999999999974
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-14 Score=138.65 Aligned_cols=119 Identities=15% Similarity=0.189 Sum_probs=96.3
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcC-CEEEEEeCCHHHHHHH-------HHHHHHcCCC-CCe
Q 017428 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRA-------NALAAARGLA-DKV 210 (371)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~-~~v~gvD~s~~~~~~a-------~~~~~~~~~~-~~v 210 (371)
..+..++..+.+.+ +.+|||||||+|.++..+++.++ .+|+|+|+++.+++.| ++++...|+. .++
T Consensus 229 ~~v~~ml~~l~l~~-----g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV 303 (433)
T 1u2z_A 229 NFLSDVYQQCQLKK-----GDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNV 303 (433)
T ss_dssp HHHHHHHHHTTCCT-----TCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCE
T ss_pred HHHHHHHHhcCCCC-----CCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCce
Confidence 35566677766654 89999999999999999999765 5799999999999998 8888888853 689
Q ss_pred EEEEcCCCCC--CC--CCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 211 SFQVGDALQQ--PF--PDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 211 ~~~~~d~~~~--~~--~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
+++++|.... ++ ..++||+|+++..+ +.++...+++++.++|||||.+++.+.
T Consensus 304 ~~i~gD~~~~~~~~~~~~~~FDvIvvn~~l-~~~d~~~~L~el~r~LKpGG~lVi~d~ 360 (433)
T 1u2z_A 304 EFSLKKSFVDNNRVAELIPQCDVILVNNFL-FDEDLNKKVEKILQTAKVGCKIISLKS 360 (433)
T ss_dssp EEEESSCSTTCHHHHHHGGGCSEEEECCTT-CCHHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred EEEEcCccccccccccccCCCCEEEEeCcc-ccccHHHHHHHHHHhCCCCeEEEEeec
Confidence 9999865432 12 24789999987666 446788899999999999999999763
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-14 Score=134.48 Aligned_cols=112 Identities=15% Similarity=0.269 Sum_probs=96.0
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (371)
....++..+.+.+ +.+|||||||+|.++..+++..+ .+|+|+|+|+.+++.|+++++..++. ++.+..+|+.
T Consensus 63 ~~~~l~~~l~~~~-----~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~-~v~~~~~d~~ 136 (317)
T 1dl5_A 63 LMALFMEWVGLDK-----GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIE-NVIFVCGDGY 136 (317)
T ss_dssp HHHHHHHHTTCCT-----TCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGG
T ss_pred HHHHHHHhcCCCC-----cCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CeEEEECChh
Confidence 4556667666654 88999999999999999998762 56999999999999999999988874 5999999998
Q ss_pred CCCCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 219 QQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 219 ~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
+.+.++++||+|++..+++|+. +++.++|||||++++...
T Consensus 137 ~~~~~~~~fD~Iv~~~~~~~~~------~~~~~~LkpgG~lvi~~~ 176 (317)
T 1dl5_A 137 YGVPEFSPYDVIFVTVGVDEVP------ETWFTQLKEGGRVIVPIN 176 (317)
T ss_dssp GCCGGGCCEEEEEECSBBSCCC------HHHHHHEEEEEEEEEEBC
T ss_pred hccccCCCeEEEEEcCCHHHHH------HHHHHhcCCCcEEEEEEC
Confidence 8654568899999999999987 578899999999999753
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.9e-15 Score=127.69 Aligned_cols=120 Identities=13% Similarity=0.048 Sum_probs=94.4
Q ss_pred HHHHHHHHcC-CCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 017428 141 MIEETLRFAG-VSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (371)
Q Consensus 141 ~~~~~l~~~~-~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (371)
+.+.++..+. .. ++.+|||+|||+|.++..+++....+|+|+|+|+.+++.|+++++..++.+++.++.+|+.+
T Consensus 18 ~~~~~~~~l~~~~-----~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 92 (177)
T 2esr_A 18 VRGAIFNMIGPYF-----NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAER 92 (177)
T ss_dssp CHHHHHHHHCSCC-----CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHH
T ss_pred HHHHHHHHHHhhc-----CCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHH
Confidence 3444555444 22 37899999999999999998873369999999999999999999988887789999999877
Q ss_pred C-CCCCCccceEEccccccCcCCHHHHHHHHH--HhcCCCcEEEEEeccC
Q 017428 220 Q-PFPDGQFDLVWSMESGEHMPDKSKFVSELA--RVTAPAGTIIIVTWCH 266 (371)
Q Consensus 220 ~-~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~--~~LkpgG~l~i~~~~~ 266 (371)
. +..+++||+|++...++ ......+++.+. ++|+|||.+++.....
T Consensus 93 ~~~~~~~~fD~i~~~~~~~-~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 141 (177)
T 2esr_A 93 AIDCLTGRFDLVFLDPPYA-KETIVATIEALAAKNLLSEQVMVVCETDKT 141 (177)
T ss_dssp HHHHBCSCEEEEEECCSSH-HHHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred hHHhhcCCCCEEEECCCCC-cchHHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence 3 33346799999876542 244567777776 9999999999987543
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.7e-14 Score=125.76 Aligned_cols=112 Identities=21% Similarity=0.303 Sum_probs=93.5
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (371)
....++..+...+ +.+|||+|||+|.++..+++..+ .+|+++|+++.+++.+++++...+++ ++.+..+|+.
T Consensus 65 ~~~~~~~~~~~~~-----~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~ 138 (215)
T 2yxe_A 65 MVGMMCELLDLKP-----GMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYD-NVIVIVGDGT 138 (215)
T ss_dssp HHHHHHHHTTCCT-----TCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEESCGG
T ss_pred HHHHHHHhhCCCC-----CCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEECCcc
Confidence 3445556655544 78999999999999999999864 79999999999999999999888774 6999999985
Q ss_pred CCCCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 219 QQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 219 ~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
.....+++||+|++..+++|+. +++.++|||||++++...
T Consensus 139 ~~~~~~~~fD~v~~~~~~~~~~------~~~~~~L~pgG~lv~~~~ 178 (215)
T 2yxe_A 139 LGYEPLAPYDRIYTTAAGPKIP------EPLIRQLKDGGKLLMPVG 178 (215)
T ss_dssp GCCGGGCCEEEEEESSBBSSCC------HHHHHTEEEEEEEEEEES
T ss_pred cCCCCCCCeeEEEECCchHHHH------HHHHHHcCCCcEEEEEEC
Confidence 5322367899999999999887 488999999999999864
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.59 E-value=5.3e-15 Score=138.06 Aligned_cols=160 Identities=14% Similarity=0.130 Sum_probs=90.2
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcC----------CCCCe
Q 017428 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRANALAAARG----------LADKV 210 (371)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~----------~~~~v 210 (371)
..++..+.+.+ +.+|||+|||+|.++..+++..+ .+|+++|+++.+++.|++++...+ ...++
T Consensus 95 ~~~l~~l~~~~-----g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v 169 (336)
T 2b25_A 95 NMILSMMDINP-----GDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNV 169 (336)
T ss_dssp HHHHHHHTCCT-----TCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCE
T ss_pred HHHHHhcCCCC-----CCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCce
Confidence 44455555554 88999999999999999999753 799999999999999999987632 33689
Q ss_pred EEEEcCCCCC--CCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHh
Q 017428 211 SFQVGDALQQ--PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKIC 288 (371)
Q Consensus 211 ~~~~~d~~~~--~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (371)
++..+|+.+. ++++++||+|++.. .++..+++++.++|+|||.+++...+.. ...... ..+....
T Consensus 170 ~~~~~d~~~~~~~~~~~~fD~V~~~~-----~~~~~~l~~~~~~LkpgG~lv~~~~~~~-------~~~~~~-~~l~~~~ 236 (336)
T 2b25_A 170 DFIHKDISGATEDIKSLTFDAVALDM-----LNPHVTLPVFYPHLKHGGVCAVYVVNIT-------QVIELL-DGIRTCE 236 (336)
T ss_dssp EEEESCTTCCC-------EEEEEECS-----SSTTTTHHHHGGGEEEEEEEEEEESSHH-------HHHHHH-HHHHHHT
T ss_pred EEEECChHHcccccCCCCeeEEEECC-----CCHHHHHHHHHHhcCCCcEEEEEeCCHH-------HHHHHH-HHHHhcC
Confidence 9999999886 45667899999843 3444589999999999999998774211 111111 1111110
Q ss_pred hcc--------CCCCC------CCHHHHHHHHHhCCCceEEEEecC
Q 017428 289 DAY--------YLPAW------CSTADYVKLLQSLSLEDIKAEDWS 320 (371)
Q Consensus 289 ~~~--------~~~~~------~~~~~~~~ll~~aGF~~v~~~~~~ 320 (371)
..+ ....| ....++.+.|+++||+++++....
T Consensus 237 ~~~~~~~~~~~~~~~w~~~~~~~~~g~y~~~l~~aGF~~v~~~~~~ 282 (336)
T 2b25_A 237 LALSCEKISEVIVRDWLVCLAKQKNGILAQKVESKINTDVQLDSQE 282 (336)
T ss_dssp CCEEEEEEECCCCCCEEECC--------------------------
T ss_pred CCcccceEEEecccceEEEeecccccchhhhhcccccccccccccc
Confidence 000 00111 111288999999999999887654
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=8.7e-15 Score=129.33 Aligned_cols=101 Identities=12% Similarity=0.121 Sum_probs=82.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC---CCCCCccceEEc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ---PFPDGQFDLVWS 232 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~~~fD~v~~ 232 (371)
++.+|||+|||+|.++..+++.+ +.+|+|+|+|+.+++.+.+.++.. .++.++.+|+.+. ++.+++||+|++
T Consensus 77 ~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~---~~v~~~~~d~~~~~~~~~~~~~~D~V~~ 153 (233)
T 2ipx_A 77 PGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR---TNIIPVIEDARHPHKYRMLIAMVDVIFA 153 (233)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC---TTEEEECSCTTCGGGGGGGCCCEEEEEE
T ss_pred CCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc---CCeEEEEcccCChhhhcccCCcEEEEEE
Confidence 48899999999999999999986 379999999999888887777664 5799999999873 445688999998
Q ss_pred cccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 233 MESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 233 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
... .......++.++.++|||||++++..
T Consensus 154 ~~~--~~~~~~~~~~~~~~~LkpgG~l~i~~ 182 (233)
T 2ipx_A 154 DVA--QPDQTRIVALNAHTFLRNGGHFVISI 182 (233)
T ss_dssp CCC--CTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCC--CccHHHHHHHHHHHHcCCCeEEEEEE
Confidence 544 22223556889999999999999954
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.59 E-value=4.7e-15 Score=126.09 Aligned_cols=109 Identities=16% Similarity=0.012 Sum_probs=90.5
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----CCCCccceEEcc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----FPDGQFDLVWSM 233 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~v~~~ 233 (371)
++.+|||+|||+|.++..+++....+|+|+|+++.+++.|++++...++.++++++.+|+.+.. ..+++||+|++.
T Consensus 44 ~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~ 123 (187)
T 2fhp_A 44 DGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLD 123 (187)
T ss_dssp SSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEEC
Confidence 3789999999999999998885346999999999999999999998887678999999987632 226789999998
Q ss_pred ccccCcCCHHHHHHHH--HHhcCCCcEEEEEeccCC
Q 017428 234 ESGEHMPDKSKFVSEL--ARVTAPAGTIIIVTWCHR 267 (371)
Q Consensus 234 ~~l~~~~~~~~~l~~~--~~~LkpgG~l~i~~~~~~ 267 (371)
..++ ..+....++.+ .++|+|||.+++......
T Consensus 124 ~~~~-~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~ 158 (187)
T 2fhp_A 124 PPYA-KQEIVSQLEKMLERQLLTNEAVIVCETDKTV 158 (187)
T ss_dssp CCGG-GCCHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred CCCC-chhHHHHHHHHHHhcccCCCCEEEEEeCCcc
Confidence 7743 45667778888 889999999999775443
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.5e-14 Score=126.14 Aligned_cols=125 Identities=16% Similarity=0.111 Sum_probs=103.1
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCC-ccceEEcccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDG-QFDLVWSMES 235 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~fD~v~~~~~ 235 (371)
++.+|||||||+|.+++.++... ..+|+++|+++.+++.|+++++.+++.+++++..+|..+. ++.+ .||+|+...+
T Consensus 15 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~-l~~~~~~D~IviaG~ 93 (225)
T 3kr9_A 15 QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAA-FEETDQVSVITIAGM 93 (225)
T ss_dssp TTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGG-CCGGGCCCEEEEEEE
T ss_pred CCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhh-cccCcCCCEEEEcCC
Confidence 47899999999999999999975 4589999999999999999999999988899999998652 2333 6999987654
Q ss_pred ccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEE
Q 017428 236 GEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIK 315 (371)
Q Consensus 236 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~ 315 (371)
-. .-...++.+....|+|+|++++.-. ...+.++++|.+.||.+++
T Consensus 94 Gg--~~i~~Il~~~~~~L~~~~~lVlq~~--------------------------------~~~~~vr~~L~~~Gf~i~~ 139 (225)
T 3kr9_A 94 GG--RLIARILEEGLGKLANVERLILQPN--------------------------------NREDDLRIWLQDHGFQIVA 139 (225)
T ss_dssp CH--HHHHHHHHHTGGGCTTCCEEEEEES--------------------------------SCHHHHHHHHHHTTEEEEE
T ss_pred Ch--HHHHHHHHHHHHHhCCCCEEEEECC--------------------------------CCHHHHHHHHHHCCCEEEE
Confidence 32 1257889999999999999998541 1466788999999999887
Q ss_pred EE
Q 017428 316 AE 317 (371)
Q Consensus 316 ~~ 317 (371)
..
T Consensus 140 e~ 141 (225)
T 3kr9_A 140 ES 141 (225)
T ss_dssp EE
T ss_pred EE
Confidence 64
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-14 Score=135.46 Aligned_cols=102 Identities=24% Similarity=0.256 Sum_probs=89.4
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccc---
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES--- 235 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~--- 235 (371)
+.+|||||||+|.++..+++....+|+|+|+| .+++.|+++++.+++.++++++.+|+.+.++++++||+|++..+
T Consensus 39 ~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~~ 117 (328)
T 1g6q_1 39 DKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYF 117 (328)
T ss_dssp TCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBTT
T ss_pred CCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCchhh
Confidence 78999999999999999988633489999999 59999999999999888899999999998877789999998754
Q ss_pred ccCcCCHHHHHHHHHHhcCCCcEEEE
Q 017428 236 GEHMPDKSKFVSELARVTAPAGTIII 261 (371)
Q Consensus 236 l~~~~~~~~~l~~~~~~LkpgG~l~i 261 (371)
+.+......++.++.++|||||.++.
T Consensus 118 l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 118 LLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp BSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred cccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 44446678999999999999999974
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.9e-14 Score=126.21 Aligned_cols=104 Identities=20% Similarity=0.299 Sum_probs=88.9
Q ss_pred CCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C-CC---CCccceEE
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P-FP---DGQFDLVW 231 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~~---~~~fD~v~ 231 (371)
+.+|||||||+|..+..+++.+ +.+|+++|+++.+++.|++++...++.++++++++|+.+. + ++ .++||+|+
T Consensus 59 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~ 138 (223)
T 3duw_A 59 ARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIF 138 (223)
T ss_dssp CSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEEE
T ss_pred CCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEEE
Confidence 7899999999999999999986 5799999999999999999999999887899999998653 1 11 26799999
Q ss_pred ccccccCcCCHHHHHHHHHHhcCCCcEEEEEecc
Q 017428 232 SMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 232 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
+... ..+...+++++.++|+|||++++.+..
T Consensus 139 ~d~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~ 169 (223)
T 3duw_A 139 IDAD---KQNNPAYFEWALKLSRPGTVIIGDNVV 169 (223)
T ss_dssp ECSC---GGGHHHHHHHHHHTCCTTCEEEEESCS
T ss_pred EcCC---cHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 7654 346678999999999999988887643
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=5.9e-15 Score=130.58 Aligned_cols=105 Identities=21% Similarity=0.366 Sum_probs=84.9
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHH------cCCCCCeEEEEcCCCC-CC--CCCCcc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAA------RGLADKVSFQVGDALQ-QP--FPDGQF 227 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~------~~~~~~v~~~~~d~~~-~~--~~~~~f 227 (371)
++.+|||||||+|.++..+++.+ +..|+|+|+|+.|++.|+++++. .+. .|+.++++|+.+ ++ +++++|
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~-~nv~~~~~d~~~~l~~~~~~~~~ 124 (235)
T 3ckk_A 46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGF-QNIACLRSNAMKHLPNFFYKGQL 124 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCC-TTEEEEECCTTTCHHHHCCTTCE
T ss_pred CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCC-CeEEEEECcHHHhhhhhCCCcCe
Confidence 36789999999999999999887 67999999999999999988764 344 589999999987 55 678999
Q ss_pred ceEEccccccCcCC--------HHHHHHHHHHhcCCCcEEEEEe
Q 017428 228 DLVWSMESGEHMPD--------KSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 228 D~v~~~~~l~~~~~--------~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
|.|++...-.+... ...+++++.++|||||.|++..
T Consensus 125 D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~t 168 (235)
T 3ckk_A 125 TKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTIT 168 (235)
T ss_dssp EEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEe
Confidence 99987543322211 1479999999999999999975
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.6e-14 Score=127.23 Aligned_cols=110 Identities=15% Similarity=0.136 Sum_probs=92.4
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (371)
.+..++..+...+ +.+|||+|||+|.++..+++. +.+|+|+|+++.+++.+++++...+ ++.+..+|+.+.
T Consensus 58 ~~~~~~~~~~~~~-----~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~---~v~~~~~d~~~~ 128 (231)
T 1vbf_A 58 LGIFMLDELDLHK-----GQKVLEIGTGIGYYTALIAEI-VDKVVSVEINEKMYNYASKLLSYYN---NIKLILGDGTLG 128 (231)
T ss_dssp HHHHHHHHTTCCT-----TCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHTTCS---SEEEEESCGGGC
T ss_pred HHHHHHHhcCCCC-----CCEEEEEcCCCCHHHHHHHHH-cCEEEEEeCCHHHHHHHHHHHhhcC---CeEEEECCcccc
Confidence 4556666665554 789999999999999999987 5899999999999999999886654 799999999873
Q ss_pred CCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEecc
Q 017428 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 221 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
...+++||+|++..+++|+.+ ++.++|+|||++++....
T Consensus 129 ~~~~~~fD~v~~~~~~~~~~~------~~~~~L~pgG~l~~~~~~ 167 (231)
T 1vbf_A 129 YEEEKPYDRVVVWATAPTLLC------KPYEQLKEGGIMILPIGV 167 (231)
T ss_dssp CGGGCCEEEEEESSBBSSCCH------HHHHTEEEEEEEEEEECS
T ss_pred cccCCCccEEEECCcHHHHHH------HHHHHcCCCcEEEEEEcC
Confidence 334678999999999999863 688999999999998743
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.3e-14 Score=136.01 Aligned_cols=116 Identities=23% Similarity=0.264 Sum_probs=96.4
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (371)
..+.++..+...+ +.+|||||||+|.++..+++....+|+|+|+|+ +++.|+++++.+++.++++++.+|+.+.
T Consensus 38 y~~~i~~~l~~~~-----~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~ 111 (348)
T 2y1w_A 38 YQRAILQNHTDFK-----DKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEV 111 (348)
T ss_dssp HHHHHHHTGGGTT-----TCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTC
T ss_pred HHHHHHhccccCC-----cCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhC
Confidence 3344555554433 789999999999999999886345999999996 8899999999999878999999999988
Q ss_pred CCCCCccceEEccccccCcC--CHHHHHHHHHHhcCCCcEEEEEe
Q 017428 221 PFPDGQFDLVWSMESGEHMP--DKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 221 ~~~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+++ ++||+|++..+++|+. +....+.++.++|||||.+++..
T Consensus 112 ~~~-~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 155 (348)
T 2y1w_A 112 SLP-EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTI 155 (348)
T ss_dssp CCS-SCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESCE
T ss_pred CCC-CceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEec
Confidence 765 6899999998888774 45678889999999999998643
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.58 E-value=3.5e-15 Score=125.97 Aligned_cols=113 Identities=14% Similarity=0.116 Sum_probs=92.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC---CCCccceEEccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF---PDGQFDLVWSME 234 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~fD~v~~~~ 234 (371)
++.+|||||||. +++|+|+.|++.|+++.. .++.+.++|+.++++ ++++||+|++..
T Consensus 12 ~g~~vL~~~~g~---------------v~vD~s~~ml~~a~~~~~-----~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~ 71 (176)
T 2ld4_A 12 AGQFVAVVWDKS---------------SPVEALKGLVDKLQALTG-----NEGRVSVENIKQLLQSAHKESSFDIILSGL 71 (176)
T ss_dssp TTSEEEEEECTT---------------SCHHHHHHHHHHHHHHTT-----TTSEEEEEEGGGGGGGCCCSSCEEEEEECC
T ss_pred CCCEEEEecCCc---------------eeeeCCHHHHHHHHHhcc-----cCcEEEEechhcCccccCCCCCEeEEEECC
Confidence 489999999996 239999999999998752 358999999998876 789999999999
Q ss_pred cccCc-CCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCC
Q 017428 235 SGEHM-PDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSL 311 (371)
Q Consensus 235 ~l~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF 311 (371)
+++|+ ++...++++++++|||||++++.+....... ... ...+.+++.++|+++||
T Consensus 72 ~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~------------------~~~---~~~~~~~~~~~l~~aGf 128 (176)
T 2ld4_A 72 VPGSTTLHSAEILAEIARILRPGGCLFLKEPVETAVD------------------NNS---KVKTASKLCSALTLSGL 128 (176)
T ss_dssp STTCCCCCCHHHHHHHHHHEEEEEEEEEEEEEESSSC------------------SSS---SSCCHHHHHHHHHHTTC
T ss_pred hhhhcccCHHHHHHHHHHHCCCCEEEEEEcccccccc------------------ccc---ccCCHHHHHHHHHHCCC
Confidence 99999 8999999999999999999999654321100 001 13478999999999999
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=4.2e-16 Score=138.46 Aligned_cols=139 Identities=25% Similarity=0.290 Sum_probs=111.7
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 238 (371)
+.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++++..++.+++.++++|+.+.+ ++++||+|++...+++
T Consensus 79 ~~~vLD~gcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~~~~ 156 (241)
T 3gdh_A 79 CDVVVDAFCGVGGNTIQFALT-GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-SFLKADVVFLSPPWGG 156 (241)
T ss_dssp CSEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG-GGCCCSEEEECCCCSS
T ss_pred CCEEEECccccCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc-ccCCCCEEEECCCcCC
Confidence 789999999999999999987 68999999999999999999999988678999999998876 5689999999999999
Q ss_pred cCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHh--hccCCCCCCCHHHHHHHHHhCCCceEEE
Q 017428 239 MPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKIC--DAYYLPAWCSTADYVKLLQSLSLEDIKA 316 (371)
Q Consensus 239 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ll~~aGF~~v~~ 316 (371)
..+....+.+++++|+|||.+++... .... .....+.....+++..++...|...++.
T Consensus 157 ~~~~~~~~~~~~~~L~pgG~~i~~~~--------------------~~~~~~~~~~lp~~~~~~~~~~~l~~~g~~~i~~ 216 (241)
T 3gdh_A 157 PDYATAETFDIRTMMSPDGFEIFRLS--------------------KKITNNIVYFLPRNADIDQVASLAGPGGQVEIEQ 216 (241)
T ss_dssp GGGGGSSSBCTTTSCSSCHHHHHHHH--------------------HHHCSCEEEEEETTBCHHHHHHTTCTTCCEEEEE
T ss_pred cchhhhHHHHHHhhcCCcceeHHHHH--------------------HhhCCceEEECCCCCCHHHHHHHhccCCCEEEEe
Confidence 87776678889999999998655321 0110 1112233457888888888888766654
Q ss_pred Eec
Q 017428 317 EDW 319 (371)
Q Consensus 317 ~~~ 319 (371)
...
T Consensus 217 ~~~ 219 (241)
T 3gdh_A 217 NFL 219 (241)
T ss_dssp EEE
T ss_pred hhh
Confidence 433
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=2.6e-15 Score=149.74 Aligned_cols=106 Identities=28% Similarity=0.342 Sum_probs=90.6
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--CCCCCccceEEccccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--PFPDGQFDLVWSMESG 236 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD~v~~~~~l 236 (371)
+.+|||||||+|.++..|++. |+.|+|||+|+.+++.|+..+...+. .+++|.+++++++ .+++++||+|++..++
T Consensus 67 ~~~vLDvGCG~G~~~~~la~~-ga~V~giD~~~~~i~~a~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~~ 144 (569)
T 4azs_A 67 PLNVLDLGCAQGFFSLSLASK-GATIVGIDFQQENINVCRALAEENPD-FAAEFRVGRIEEVIAALEEGEFDLAIGLSVF 144 (569)
T ss_dssp CCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHTSTT-SEEEEEECCHHHHHHHCCTTSCSEEEEESCH
T ss_pred CCeEEEECCCCcHHHHHHHhC-CCEEEEECCCHHHHHHHHHHHHhcCC-CceEEEECCHHHHhhhccCCCccEEEECcch
Confidence 689999999999999999997 99999999999999999999887763 3699999999887 4567899999999999
Q ss_pred cCcCCHHH--HHHHHHHhcCCCcEEEEEeccC
Q 017428 237 EHMPDKSK--FVSELARVTAPAGTIIIVTWCH 266 (371)
Q Consensus 237 ~~~~~~~~--~l~~~~~~LkpgG~l~i~~~~~ 266 (371)
+|++++.. .+..+.+.|+++|..++.....
T Consensus 145 ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~~ 176 (569)
T 4azs_A 145 HHIVHLHGIDEVKRLLSRLADVTQAVILELAV 176 (569)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHSSEEEEECCC
T ss_pred hcCCCHHHHHHHHHHHHHhccccceeeEEecc
Confidence 99988753 3556777888888877766543
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.5e-14 Score=127.21 Aligned_cols=126 Identities=12% Similarity=0.065 Sum_probs=103.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l 236 (371)
++.+|||||||+|.+++.+++.. ..+|+++|+++.+++.|+++++.+++.+++.+..+|..+...++++||+|++..+.
T Consensus 21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~IviagmG 100 (244)
T 3gnl_A 21 KNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGMG 100 (244)
T ss_dssp SSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEEC
T ss_pred CCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeCCc
Confidence 47899999999999999999875 35799999999999999999999999888999999988765444469998875443
Q ss_pred cCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEE
Q 017428 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKA 316 (371)
Q Consensus 237 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~ 316 (371)
. .-...++.+..+.|+++|+|++.-. ...+.++++|.+.||.+++.
T Consensus 101 g--~lI~~IL~~~~~~L~~~~~lIlq~~--------------------------------~~~~~lr~~L~~~Gf~i~~E 146 (244)
T 3gnl_A 101 G--TLIRTILEEGAAKLAGVTKLILQPN--------------------------------IAAWQLREWSEQNNWLITSE 146 (244)
T ss_dssp H--HHHHHHHHHTGGGGTTCCEEEEEES--------------------------------SCHHHHHHHHHHHTEEEEEE
T ss_pred h--HHHHHHHHHHHHHhCCCCEEEEEcC--------------------------------CChHHHHHHHHHCCCEEEEE
Confidence 2 2356789999999999999999741 14667889999999997664
Q ss_pred E
Q 017428 317 E 317 (371)
Q Consensus 317 ~ 317 (371)
.
T Consensus 147 ~ 147 (244)
T 3gnl_A 147 A 147 (244)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.57 E-value=6.9e-15 Score=127.15 Aligned_cols=105 Identities=11% Similarity=0.023 Sum_probs=88.8
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-CCCCCCccceEEcccccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-QPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~fD~v~~~~~l~ 237 (371)
+.+|||+|||+|.++..++.....+|+|+|+|+.+++.|+++++..++ ++++++++|+.+ ++...++||+|++...+
T Consensus 55 ~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~- 132 (202)
T 2fpo_A 55 DAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA-GNARVVNSNAMSFLAQKGTPHNIVFVDPPF- 132 (202)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCHHHHHSSCCCCEEEEEECCSS-
T ss_pred CCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHHHhhcCCCCCEEEECCCC-
Confidence 689999999999999988776435999999999999999999999887 689999999877 35556789999987764
Q ss_pred CcCCHHHHHHHHHH--hcCCCcEEEEEecc
Q 017428 238 HMPDKSKFVSELAR--VTAPAGTIIIVTWC 265 (371)
Q Consensus 238 ~~~~~~~~l~~~~~--~LkpgG~l~i~~~~ 265 (371)
+..+...+++.+.+ +|+|||.+++....
T Consensus 133 ~~~~~~~~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 133 RRGLLEETINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp STTTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred CCCcHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 45677888888876 59999999987643
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=5.3e-15 Score=133.36 Aligned_cols=104 Identities=17% Similarity=0.240 Sum_probs=85.3
Q ss_pred CCEEEEECCCcCh----HHHHHHHHcC-----CEEEEEeCCHHHHHHHHHHHHH-----------------------cC-
Q 017428 159 PKNVVDVGCGIGG----SSRYLAKKFG-----AKCQGITLSPVQAQRANALAAA-----------------------RG- 205 (371)
Q Consensus 159 ~~~VLDlG~GtG~----~~~~l~~~~~-----~~v~gvD~s~~~~~~a~~~~~~-----------------------~~- 205 (371)
+.+|||+|||||. +++.+++.++ .+|+|+|+|+.+++.|++.+.. .+
T Consensus 106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~ 185 (274)
T 1af7_A 106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL 185 (274)
T ss_dssp CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCc
Confidence 6799999999998 6666776543 5899999999999999986310 00
Q ss_pred ------CCCCeEEEEcCCCCCCCC-CCccceEEccccccCcCCH--HHHHHHHHHhcCCCcEEEEE
Q 017428 206 ------LADKVSFQVGDALQQPFP-DGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIV 262 (371)
Q Consensus 206 ------~~~~v~~~~~d~~~~~~~-~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~ 262 (371)
+..+|.|.+.|+.+.+++ .++||+|+|.++++|+++. .+++++++++|+|||+|++.
T Consensus 186 ~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg 251 (274)
T 1af7_A 186 VRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 251 (274)
T ss_dssp EEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred eeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 013699999999886665 5789999999999999765 79999999999999999984
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.57 E-value=9.6e-15 Score=129.86 Aligned_cols=107 Identities=16% Similarity=0.214 Sum_probs=91.8
Q ss_pred CCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-CCC-----CCccceE
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-PFP-----DGQFDLV 230 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~-----~~~fD~v 230 (371)
+.+|||||||+|..+..+++.+ +.+|+++|+++.+++.|+++++..++.++++++++|+.+. +.. .++||+|
T Consensus 61 ~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~V 140 (242)
T 3r3h_A 61 AKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFI 140 (242)
T ss_dssp CSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEEE
T ss_pred cCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeEE
Confidence 6899999999999999999976 5799999999999999999999999988999999998764 211 4789999
Q ss_pred EccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCC
Q 017428 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRD 268 (371)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 268 (371)
++... ..+...+++++.++|||||+|++.+.....
T Consensus 141 ~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d~~~~~g 175 (242)
T 3r3h_A 141 FIDAD---KTNYLNYYELALKLVTPKGLIAIDNIFWDG 175 (242)
T ss_dssp EEESC---GGGHHHHHHHHHHHEEEEEEEEEECSSSSS
T ss_pred EEcCC---hHHhHHHHHHHHHhcCCCeEEEEECCccCC
Confidence 98654 356778999999999999999998765443
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.8e-14 Score=132.40 Aligned_cols=138 Identities=16% Similarity=0.221 Sum_probs=103.2
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHH---cCCCCCeEEEEcCCCCCCC--CCCccceEEc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAA---RGLADKVSFQVGDALQQPF--PDGQFDLVWS 232 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~v~~~~~d~~~~~~--~~~~fD~v~~ 232 (371)
+.+|||||||+|.++..+++.. ..+|+++|+++.+++.|++++.. ....++++++.+|+.+... ++++||+|++
T Consensus 96 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvIi~ 175 (304)
T 3bwc_A 96 PERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVVII 175 (304)
T ss_dssp CCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEEEE
T ss_pred CCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEEEE
Confidence 6899999999999999999865 56999999999999999998742 2223689999999877542 4688999999
Q ss_pred cccccCcCCH----HHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHh
Q 017428 233 MESGEHMPDK----SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQS 308 (371)
Q Consensus 233 ~~~l~~~~~~----~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 308 (371)
.....+.+.. ..++++++++|||||++++...+.. .. ......+.+.|++
T Consensus 176 d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~--------~~------------------~~~~~~~~~~l~~ 229 (304)
T 3bwc_A 176 DTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIW--------LD------------------LELIEKMSRFIRE 229 (304)
T ss_dssp ECC---------CCHHHHHHHHHHEEEEEEEEEEECCTT--------TC------------------HHHHHHHHHHHHH
T ss_pred CCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCcc--------cc------------------hHHHHHHHHHHHh
Confidence 7655443322 5899999999999999999752210 00 0135678889999
Q ss_pred CCCceEEEEecCCc
Q 017428 309 LSLEDIKAEDWSQN 322 (371)
Q Consensus 309 aGF~~v~~~~~~~~ 322 (371)
+||..+.......+
T Consensus 230 ~GF~~v~~~~~~vP 243 (304)
T 3bwc_A 230 TGFASVQYALMHVP 243 (304)
T ss_dssp HTCSEEEEEECCCT
T ss_pred CCCCcEEEEEeecc
Confidence 99998887665444
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.1e-14 Score=129.91 Aligned_cols=154 Identities=11% Similarity=0.061 Sum_probs=102.8
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEE-EcCCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQ-VGDALQ 219 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~-~~d~~~ 219 (371)
.+..++..+.+.. ++.+|||||||||.++..+++....+|+|+|+|+.|++.+.+. .+++... ..++..
T Consensus 72 Kl~~~l~~~~~~~----~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~------~~rv~~~~~~ni~~ 141 (291)
T 3hp7_A 72 KLEKALAVFNLSV----EDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQ------DDRVRSMEQYNFRY 141 (291)
T ss_dssp HHHHHHHHTTCCC----TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHT------CTTEEEECSCCGGG
T ss_pred HHHHHHHhcCCCc----cccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHh------CcccceecccCcee
Confidence 4556666666543 4789999999999999999887335999999999999885432 1344332 334443
Q ss_pred CC---CCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCC-C-
Q 017428 220 QP---FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYL-P- 294 (371)
Q Consensus 220 ~~---~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~- 294 (371)
++ ++..+||+|++..+++++ ..++.+++++|||||.+++..- +.+........ ..+. .
T Consensus 142 l~~~~l~~~~fD~v~~d~sf~sl---~~vL~e~~rvLkpGG~lv~lvk--Pqfe~~~~~~~------------~~G~vrd 204 (291)
T 3hp7_A 142 AEPVDFTEGLPSFASIDVSFISL---NLILPALAKILVDGGQVVALVK--PQFEAGREQIG------------KNGIVRE 204 (291)
T ss_dssp CCGGGCTTCCCSEEEECCSSSCG---GGTHHHHHHHSCTTCEEEEEEC--GGGTSCGGGCC-------------CCCCCC
T ss_pred cchhhCCCCCCCEEEEEeeHhhH---HHHHHHHHHHcCcCCEEEEEEC--cccccChhhcC------------CCCccCC
Confidence 32 344569999988877654 6789999999999999999731 11100000000 0000 0
Q ss_pred ---CCCCHHHHHHHHHhCCCceEEEEecCC
Q 017428 295 ---AWCSTADYVKLLQSLSLEDIKAEDWSQ 321 (371)
Q Consensus 295 ---~~~~~~~~~~ll~~aGF~~v~~~~~~~ 321 (371)
+....+++.++++++||.+..+.....
T Consensus 205 ~~~~~~~~~~v~~~~~~~Gf~v~~~~~spi 234 (291)
T 3hp7_A 205 SSIHEKVLETVTAFAVDYGFSVKGLDFSPI 234 (291)
T ss_dssp HHHHHHHHHHHHHHHHHTTEEEEEEEECSS
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEEECCC
Confidence 013578899999999999888766443
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.5e-14 Score=126.30 Aligned_cols=104 Identities=22% Similarity=0.314 Sum_probs=91.4
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-CCC--CCccceEEccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-PFP--DGQFDLVWSME 234 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~--~~~fD~v~~~~ 234 (371)
+.+|||+|||+|..+..+++.+ +.+|+++|+++.+++.|++++...++.+++.+..+|+.+. +.. +++||+|++..
T Consensus 55 ~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~ 134 (233)
T 2gpy_A 55 PARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFIDA 134 (233)
T ss_dssp CSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEEEG
T ss_pred CCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEECC
Confidence 7899999999999999999987 6899999999999999999999988877899999998774 322 57899999876
Q ss_pred cccCcCCHHHHHHHHHHhcCCCcEEEEEecc
Q 017428 235 SGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 235 ~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
.. .+...+++++.++|+|||.+++.++.
T Consensus 135 ~~---~~~~~~l~~~~~~L~pgG~lv~~~~~ 162 (233)
T 2gpy_A 135 AK---GQYRRFFDMYSPMVRPGGLILSDNVL 162 (233)
T ss_dssp GG---SCHHHHHHHHGGGEEEEEEEEEETTT
T ss_pred CH---HHHHHHHHHHHHHcCCCeEEEEEcCC
Confidence 64 47789999999999999999997643
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.4e-14 Score=135.20 Aligned_cols=113 Identities=19% Similarity=0.191 Sum_probs=92.8
Q ss_pred HHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCC--CeEEEEcCCCCCC
Q 017428 145 TLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLAD--KVSFQVGDALQQP 221 (371)
Q Consensus 145 ~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~--~v~~~~~d~~~~~ 221 (371)
++..+... ++.+|||+|||+|.++..+++.. +.+|+|+|+|+.+++.|++++..+++.. +++|...|+.+ +
T Consensus 214 ll~~l~~~-----~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~-~ 287 (375)
T 4dcm_A 214 FMQHLPEN-----LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-G 287 (375)
T ss_dssp HHHTCCCS-----CCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT-T
T ss_pred HHHhCccc-----CCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc-c
Confidence 35555443 36899999999999999999987 7899999999999999999999887643 58899999987 4
Q ss_pred CCCCccceEEccccccCcCC-----HHHHHHHHHHhcCCCcEEEEEe
Q 017428 222 FPDGQFDLVWSMESGEHMPD-----KSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 222 ~~~~~fD~v~~~~~l~~~~~-----~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+++++||+|+++..+++... ...+++++.++|||||.++++.
T Consensus 288 ~~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~ 334 (375)
T 4dcm_A 288 VEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 334 (375)
T ss_dssp CCTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 56789999999988875322 2478999999999999999976
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.55 E-value=2.6e-14 Score=132.01 Aligned_cols=132 Identities=14% Similarity=0.160 Sum_probs=101.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccc-
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSME- 234 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~- 234 (371)
++.+|||+|||+|..+..+++.+ +.+|+++|+|+.+++.++++++..++. ++.++++|+.+++..+++||+|++..
T Consensus 118 ~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~~~~~~~fD~Il~d~P 196 (315)
T 1ixk_A 118 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL-NVILFHSSSLHIGELNVEFDKILLDAP 196 (315)
T ss_dssp TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC-SEEEESSCGGGGGGGCCCEEEEEEECC
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-eEEEEECChhhcccccccCCEEEEeCC
Confidence 38899999999999999999876 379999999999999999999998884 79999999988754457899999742
Q ss_pred -----cccCcCCH----------------HHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCC
Q 017428 235 -----SGEHMPDK----------------SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYL 293 (371)
Q Consensus 235 -----~l~~~~~~----------------~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (371)
++.+.++. ..+++++.++|||||++++.+.+...
T Consensus 197 csg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~------------------------- 251 (315)
T 1ixk_A 197 CTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEP------------------------- 251 (315)
T ss_dssp TTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCG-------------------------
T ss_pred CCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCCh-------------------------
Confidence 23322221 48899999999999999997743211
Q ss_pred CCCCCHHHHHHHHHhCCCceEEEE
Q 017428 294 PAWCSTADYVKLLQSLSLEDIKAE 317 (371)
Q Consensus 294 ~~~~~~~~~~~ll~~aGF~~v~~~ 317 (371)
--..+.+..++++.||+.+.+.
T Consensus 252 --~Ene~~v~~~l~~~~~~~~~~~ 273 (315)
T 1ixk_A 252 --EENEFVIQWALDNFDVELLPLK 273 (315)
T ss_dssp --GGTHHHHHHHHHHSSEEEECCC
T ss_pred --HHhHHHHHHHHhcCCCEEecCC
Confidence 0134456677888888776543
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.55 E-value=3e-14 Score=129.32 Aligned_cols=113 Identities=16% Similarity=0.238 Sum_probs=96.4
Q ss_pred HHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHc-C-CCCCeEEEEcCC
Q 017428 142 IEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAAR-G-LADKVSFQVGDA 217 (371)
Q Consensus 142 ~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~-~-~~~~v~~~~~d~ 217 (371)
...++..+.+.+ +.+|||+|||+|.++..+++.. +.+|+++|+++.+++.|+++++.. + +.+++.+..+|+
T Consensus 88 ~~~i~~~~~~~~-----~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~ 162 (280)
T 1i9g_A 88 AAQIVHEGDIFP-----GARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDL 162 (280)
T ss_dssp HHHHHHHTTCCT-----TCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCG
T ss_pred HHHHHHHcCCCC-----CCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECch
Confidence 345566666554 8899999999999999999875 579999999999999999999877 4 446899999999
Q ss_pred CCCCCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 218 LQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 218 ~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
.+.++++++||+|++ +++++..+++++.++|+|||++++...
T Consensus 163 ~~~~~~~~~~D~v~~-----~~~~~~~~l~~~~~~L~pgG~l~~~~~ 204 (280)
T 1i9g_A 163 ADSELPDGSVDRAVL-----DMLAPWEVLDAVSRLLVAGGVLMVYVA 204 (280)
T ss_dssp GGCCCCTTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred HhcCCCCCceeEEEE-----CCcCHHHHHHHHHHhCCCCCEEEEEeC
Confidence 888777789999997 345777899999999999999999874
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.9e-14 Score=129.43 Aligned_cols=106 Identities=15% Similarity=0.220 Sum_probs=89.5
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHH---cCCCCCeEEEEcCCCCC-------CCCCCc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAA---RGLADKVSFQVGDALQQ-------PFPDGQ 226 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~v~~~~~d~~~~-------~~~~~~ 226 (371)
++.+|||+|||+|.++..++++. +.+|+|+|+++.+++.|++++.. .++.+++.++.+|+.+. ++++++
T Consensus 36 ~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~ 115 (260)
T 2ozv_A 36 RACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDEH 115 (260)
T ss_dssp SCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTTC
T ss_pred CCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCCC
Confidence 37899999999999999999987 57999999999999999999887 77766799999999886 255789
Q ss_pred cceEEccccccCc------------------CCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 227 FDLVWSMESGEHM------------------PDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 227 fD~v~~~~~l~~~------------------~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
||+|+++-.+... .+...+++.+.++|||||++++..
T Consensus 116 fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 170 (260)
T 2ozv_A 116 FHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLIS 170 (260)
T ss_dssp EEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 9999997333221 236789999999999999999864
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.2e-13 Score=122.99 Aligned_cols=110 Identities=13% Similarity=0.141 Sum_probs=94.7
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC
Q 017428 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF 222 (371)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 222 (371)
..++..+.+.+ +.+|||+|||+|.++..+++. +.+|+++|+++.+++.|+++....++.+++.+...|+.+...
T Consensus 81 ~~~~~~~~~~~-----~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 154 (248)
T 2yvl_A 81 FYIALKLNLNK-----EKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEV 154 (248)
T ss_dssp HHHHHHTTCCT-----TCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCC
T ss_pred HHHHHhcCCCC-----CCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhccc
Confidence 34555555554 889999999999999999998 889999999999999999999988887789999999987543
Q ss_pred CCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 223 PDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 223 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
++++||+|++ +.+++..+++++.++|+|||.+++..
T Consensus 155 ~~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~ 190 (248)
T 2yvl_A 155 PEGIFHAAFV-----DVREPWHYLEKVHKSLMEGAPVGFLL 190 (248)
T ss_dssp CTTCBSEEEE-----CSSCGGGGHHHHHHHBCTTCEEEEEE
T ss_pred CCCcccEEEE-----CCcCHHHHHHHHHHHcCCCCEEEEEe
Confidence 5678999997 34577789999999999999999987
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=8.2e-14 Score=122.34 Aligned_cols=101 Identities=20% Similarity=0.266 Sum_probs=87.0
Q ss_pred CCCEEEEECCCcChHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcCC----CCCeEEEEcCCCCCCCCCCccceEE
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRANALAAARGL----ADKVSFQVGDALQQPFPDGQFDLVW 231 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~~~~fD~v~ 231 (371)
++.+|||+|||+|..+..+++..+ .+|+++|+++.+++.+++++...++ ..++.+..+|+...+..+++||+|+
T Consensus 77 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~ 156 (226)
T 1i1n_A 77 EGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIH 156 (226)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCEEE
Confidence 478999999999999999998763 6999999999999999999887653 3589999999987655567899999
Q ss_pred ccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 232 SMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 232 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
+...++++. +++.++|||||++++...
T Consensus 157 ~~~~~~~~~------~~~~~~LkpgG~lv~~~~ 183 (226)
T 1i1n_A 157 VGAAAPVVP------QALIDQLKPGGRLILPVG 183 (226)
T ss_dssp ECSBBSSCC------HHHHHTEEEEEEEEEEES
T ss_pred ECCchHHHH------HHHHHhcCCCcEEEEEEe
Confidence 998887664 588999999999999764
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.54 E-value=2e-13 Score=119.85 Aligned_cols=136 Identities=15% Similarity=0.155 Sum_probs=95.1
Q ss_pred CCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---CCCCccceEE
Q 017428 157 KRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---FPDGQFDLVW 231 (371)
Q Consensus 157 ~~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~v~ 231 (371)
.++.+|||+|||+|.++..+++.. ..+|+|+|+|+.|++...+..+.. .|+.++++|+.... ...++||+|+
T Consensus 75 ~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r---~nv~~i~~Da~~~~~~~~~~~~~D~I~ 151 (232)
T 3id6_C 75 RKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR---PNIFPLLADARFPQSYKSVVENVDVLY 151 (232)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC---TTEEEEECCTTCGGGTTTTCCCEEEEE
T ss_pred CCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCeEEEEcccccchhhhccccceEEEE
Confidence 459999999999999999999876 469999999999876554444432 48999999997642 1246899999
Q ss_pred ccccccCcCCHHHH-HHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCC
Q 017428 232 SMESGEHMPDKSKF-VSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLS 310 (371)
Q Consensus 232 ~~~~l~~~~~~~~~-l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aG 310 (371)
+.... ++...+ ...+.++|||||+|++....... .. ....--..++..+.|+++|
T Consensus 152 ~d~a~---~~~~~il~~~~~~~LkpGG~lvisik~~~~----------------d~-----t~~~~e~~~~~~~~L~~~g 207 (232)
T 3id6_C 152 VDIAQ---PDQTDIAIYNAKFFLKVNGDMLLVIKARSI----------------DV-----TKDPKEIYKTEVEKLENSN 207 (232)
T ss_dssp ECCCC---TTHHHHHHHHHHHHEEEEEEEEEEEC----------------------------CCSSSSTTHHHHHHHHTT
T ss_pred ecCCC---hhHHHHHHHHHHHhCCCCeEEEEEEccCCc----------------cc-----CCCHHHHHHHHHHHHHHCC
Confidence 87543 555444 45666799999999997421100 00 0000112245667888999
Q ss_pred CceEEEEec
Q 017428 311 LEDIKAEDW 319 (371)
Q Consensus 311 F~~v~~~~~ 319 (371)
|+.++....
T Consensus 208 f~~~~~~~l 216 (232)
T 3id6_C 208 FETIQIINL 216 (232)
T ss_dssp EEEEEEEEC
T ss_pred CEEEEEecc
Confidence 999887654
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.54 E-value=1.7e-14 Score=128.97 Aligned_cols=121 Identities=15% Similarity=0.129 Sum_probs=91.7
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHH--c-CCEEEEEeCCHHHHHHHHHHHHHc---CCCCC---
Q 017428 139 VRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKK--F-GAKCQGITLSPVQAQRANALAAAR---GLADK--- 209 (371)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~--~-~~~v~gvD~s~~~~~~a~~~~~~~---~~~~~--- 209 (371)
..++..++..+... ++.+|||+|||+|.++..+++. . +.+|+|+|+|+.+++.|++++... ++..+
T Consensus 37 ~~l~~~~l~~~~~~-----~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~ 111 (250)
T 1o9g_A 37 TEIFQRALARLPGD-----GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELE 111 (250)
T ss_dssp HHHHHHHHHTSSCC-----SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHHHhcccC-----CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchh
Confidence 34555566544322 3689999999999999999987 4 578999999999999999887654 33212
Q ss_pred ----------------------eE-------------EEEcCCCCCCC-----CCCccceEEccccccCcCC--------
Q 017428 210 ----------------------VS-------------FQVGDALQQPF-----PDGQFDLVWSMESGEHMPD-------- 241 (371)
Q Consensus 210 ----------------------v~-------------~~~~d~~~~~~-----~~~~fD~v~~~~~l~~~~~-------- 241 (371)
++ +.++|+.+... ..++||+|+++..+.+..+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~ 191 (250)
T 1o9g_A 112 RREQSERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQ 191 (250)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHH
T ss_pred hhhhhhhcccccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeecccccccccccc
Confidence 56 99999877421 3458999999876655433
Q ss_pred -HHHHHHHHHHhcCCCcEEEEEec
Q 017428 242 -KSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 242 -~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
...+++++.++|+|||+++++..
T Consensus 192 ~~~~~l~~~~~~LkpgG~l~~~~~ 215 (250)
T 1o9g_A 192 PVAGLLRSLASALPAHAVIAVTDR 215 (250)
T ss_dssp HHHHHHHHHHHHSCTTCEEEEEES
T ss_pred HHHHHHHHHHHhcCCCcEEEEeCc
Confidence 35899999999999999999553
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=5.1e-14 Score=124.56 Aligned_cols=111 Identities=21% Similarity=0.341 Sum_probs=91.7
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (371)
+...++..+.+.+ +.+|||||||+|.++..+++..+.+|+++|+++.+++.|++++...++. ++.+..+|+ ..
T Consensus 79 ~~~~~~~~l~~~~-----~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~-~~ 151 (235)
T 1jg1_A 79 MVAIMLEIANLKP-----GMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVK-NVHVILGDG-SK 151 (235)
T ss_dssp HHHHHHHHHTCCT-----TCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCG-GG
T ss_pred HHHHHHHhcCCCC-----CCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEECCc-cc
Confidence 4445555555544 7899999999999999999986579999999999999999999988874 699999997 33
Q ss_pred CCCC-CccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 221 PFPD-GQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 221 ~~~~-~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
++++ .+||+|++..+++++.+ ++.+.|+|||++++...
T Consensus 152 ~~~~~~~fD~Ii~~~~~~~~~~------~~~~~L~pgG~lvi~~~ 190 (235)
T 1jg1_A 152 GFPPKAPYDVIIVTAGAPKIPE------PLIEQLKIGGKLIIPVG 190 (235)
T ss_dssp CCGGGCCEEEEEECSBBSSCCH------HHHHTEEEEEEEEEEEC
T ss_pred CCCCCCCccEEEECCcHHHHHH------HHHHhcCCCcEEEEEEe
Confidence 4444 35999999999988764 78899999999999764
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.8e-14 Score=123.98 Aligned_cols=103 Identities=23% Similarity=0.326 Sum_probs=88.5
Q ss_pred CCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-CCCCCccceEEcccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-PFPDGQFDLVWSMES 235 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~v~~~~~ 235 (371)
+.+|||||||+|..+..+++.+ +.+|+++|+|+.+++.|+++++..++.++++++.+|+.+. +..++ ||+|++..
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~- 134 (210)
T 3c3p_A 57 PQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMDC- 134 (210)
T ss_dssp CSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEET-
T ss_pred CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEcC-
Confidence 6799999999999999999876 5799999999999999999999888777899999998663 43346 99999873
Q ss_pred ccCcCCHHHHHHHHHHhcCCCcEEEEEecc
Q 017428 236 GEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 236 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
...+...+++++.++|||||.+++.+..
T Consensus 135 --~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 162 (210)
T 3c3p_A 135 --DVFNGADVLERMNRCLAKNALLIAVNAL 162 (210)
T ss_dssp --TTSCHHHHHHHHGGGEEEEEEEEEESSS
T ss_pred --ChhhhHHHHHHHHHhcCCCeEEEEECcc
Confidence 2457789999999999999999986643
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.53 E-value=3e-14 Score=125.04 Aligned_cols=105 Identities=17% Similarity=0.232 Sum_probs=89.5
Q ss_pred CCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C-CCC----CccceE
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P-FPD----GQFDLV 230 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~~~----~~fD~v 230 (371)
+.+|||||||+|..+..+++.+ +.+|+++|+++.+++.|+++++..++.++++++++|+.+. + +.. ++||+|
T Consensus 65 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v 144 (225)
T 3tr6_A 65 AKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLI 144 (225)
T ss_dssp CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEE
T ss_pred CCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEE
Confidence 7899999999999999999876 5799999999999999999999999887899999998653 2 111 789999
Q ss_pred EccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccC
Q 017428 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCH 266 (371)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 266 (371)
++... ..+...+++++.++|||||++++.+...
T Consensus 145 ~~~~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~~ 177 (225)
T 3tr6_A 145 YIDAD---KANTDLYYEESLKLLREGGLIAVDNVLR 177 (225)
T ss_dssp EECSC---GGGHHHHHHHHHHHEEEEEEEEEECSSG
T ss_pred EECCC---HHHHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence 96543 3567889999999999999999977543
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.4e-14 Score=138.30 Aligned_cols=117 Identities=23% Similarity=0.265 Sum_probs=96.1
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 017428 139 VRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (371)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (371)
..+.+.++..+... ++.+|||||||+|.++..+++....+|+|+|+|+ +++.|+++++..++.++++++.+|+.
T Consensus 144 ~~~~~~il~~l~~~-----~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~ 217 (480)
T 3b3j_A 144 GTYQRAILQNHTDF-----KDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVE 217 (480)
T ss_dssp HHHHHHHHHTGGGT-----TTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTT
T ss_pred HHHHHHHHHhhhhc-----CCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchh
Confidence 33455556555433 3789999999999999999885346999999998 99999999999998889999999999
Q ss_pred CCCCCCCccceEEccccccCcCC--HHHHHHHHHHhcCCCcEEEEE
Q 017428 219 QQPFPDGQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIV 262 (371)
Q Consensus 219 ~~~~~~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~ 262 (371)
+.+++ ++||+|++..+++|+.+ ....+.++.++|||||.+++.
T Consensus 218 ~~~~~-~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~~ 262 (480)
T 3b3j_A 218 EVSLP-EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT 262 (480)
T ss_dssp TCCCS-SCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEESC
T ss_pred hCccC-CCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEEE
Confidence 87655 68999999888777743 466788899999999999853
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.52 E-value=9.4e-15 Score=122.28 Aligned_cols=103 Identities=14% Similarity=0.094 Sum_probs=85.9
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C-CC--CCccceEEccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P-FP--DGQFDLVWSME 234 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~~--~~~fD~v~~~~ 234 (371)
+.+|||+|||+|.++..+++. +..|+|+|+|+.+++.|++++...++ +++++.+|+.+. + .+ .++||+|++..
T Consensus 42 ~~~vLD~GcG~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 118 (171)
T 1ws6_A 42 RGRFLDPFAGSGAVGLEAASE-GWEAVLVEKDPEAVRLLKENVRRTGL--GARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp CCEEEEETCSSCHHHHHHHHT-TCEEEEECCCHHHHHHHHHHHHHHTC--CCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEeCCCcCHHHHHHHHC-CCeEEEEeCCHHHHHHHHHHHHHcCC--ceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence 789999999999999999987 56799999999999999999988876 799999998763 2 11 24799999987
Q ss_pred cccCcCCHHHHHHHHH--HhcCCCcEEEEEeccC
Q 017428 235 SGEHMPDKSKFVSELA--RVTAPAGTIIIVTWCH 266 (371)
Q Consensus 235 ~l~~~~~~~~~l~~~~--~~LkpgG~l~i~~~~~ 266 (371)
.++ .+...+++.+. ++|+|||.+++.....
T Consensus 119 ~~~--~~~~~~~~~~~~~~~L~~gG~~~~~~~~~ 150 (171)
T 1ws6_A 119 PYA--MDLAALFGELLASGLVEAGGLYVLQHPKD 150 (171)
T ss_dssp CTT--SCTTHHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred CCc--hhHHHHHHHHHhhcccCCCcEEEEEeCCc
Confidence 765 55566777777 9999999999977544
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=4.8e-14 Score=125.75 Aligned_cols=103 Identities=17% Similarity=0.237 Sum_probs=89.4
Q ss_pred CCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C-C-----CCCccce
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P-F-----PDGQFDL 229 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~-----~~~~fD~ 229 (371)
+.+|||||||+|..+..+++.+ +.+|+++|+++.+++.|+++++..++.++++++.+|+.+. + + ++++||+
T Consensus 80 ~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~ 159 (247)
T 1sui_A 80 AKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDF 159 (247)
T ss_dssp CCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBSE
T ss_pred cCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEEE
Confidence 6799999999999999999986 5799999999999999999999988877899999998663 2 2 1578999
Q ss_pred EEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 230 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
|++... ..+...+++++.++|||||++++.+.
T Consensus 160 V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d~~ 191 (247)
T 1sui_A 160 IFVDAD---KDNYLNYHKRLIDLVKVGGVIGYDNT 191 (247)
T ss_dssp EEECSC---STTHHHHHHHHHHHBCTTCCEEEECT
T ss_pred EEEcCc---hHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 998643 35678899999999999999998664
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.52 E-value=2.1e-13 Score=119.83 Aligned_cols=135 Identities=16% Similarity=0.182 Sum_probs=98.5
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---CCCCccceEEc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---FPDGQFDLVWS 232 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~v~~ 232 (371)
++.+|||+|||+|.++..+++.+ +.+|+|+|+|+.+++.++++++.. +++.++.+|+.+.. ...++||+|++
T Consensus 73 ~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~~~D~v~~ 149 (227)
T 1g8a_A 73 PGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER---RNIVPILGDATKPEEYRALVPKVDVIFE 149 (227)
T ss_dssp TTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC---TTEEEEECCTTCGGGGTTTCCCEEEEEE
T ss_pred CCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc---CCCEEEEccCCCcchhhcccCCceEEEE
Confidence 47899999999999999999886 379999999999999998887653 58999999998732 12368999997
Q ss_pred cccccCcCCH-HHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCC
Q 017428 233 MESGEHMPDK-SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSL 311 (371)
Q Consensus 233 ~~~l~~~~~~-~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF 311 (371)
... .++. ..+++++.++|||||++++. +....... ... ... ...+++.++ +++ |
T Consensus 150 ~~~---~~~~~~~~l~~~~~~LkpgG~l~~~-~~~~~~~~---~~~--~~~--------------~~~~~l~~l-~~~-f 204 (227)
T 1g8a_A 150 DVA---QPTQAKILIDNAEVYLKRGGYGMIA-VKSRSIDV---TKE--PEQ--------------VFREVEREL-SEY-F 204 (227)
T ss_dssp CCC---STTHHHHHHHHHHHHEEEEEEEEEE-EEGGGTCT---TSC--HHH--------------HHHHHHHHH-HTT-S
T ss_pred CCC---CHhHHHHHHHHHHHhcCCCCEEEEE-EecCCCCC---CCC--hhh--------------hhHHHHHHH-Hhh-c
Confidence 644 2344 35599999999999999998 32211100 000 001 135567666 777 9
Q ss_pred ceEEEEecC
Q 017428 312 EDIKAEDWS 320 (371)
Q Consensus 312 ~~v~~~~~~ 320 (371)
+.++.....
T Consensus 205 ~~~~~~~~~ 213 (227)
T 1g8a_A 205 EVIERLNLE 213 (227)
T ss_dssp EEEEEEECT
T ss_pred eeeeEeccC
Confidence 998877653
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.52 E-value=7.1e-14 Score=122.84 Aligned_cols=101 Identities=19% Similarity=0.135 Sum_probs=87.5
Q ss_pred CCCEEEEECCCcChHHHHHHHHcC------CEEEEEeCCHHHHHHHHHHHHHcCC----CCCeEEEEcCCCCCC----CC
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFG------AKCQGITLSPVQAQRANALAAARGL----ADKVSFQVGDALQQP----FP 223 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~------~~v~gvD~s~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~----~~ 223 (371)
++.+|||||||+|.++..+++..+ .+|+++|+++.+++.|++++...++ ..++.+..+|+.+.. ..
T Consensus 80 ~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 159 (227)
T 2pbf_A 80 PGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKKE 159 (227)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCcc
Confidence 478999999999999999998754 5999999999999999999988763 358999999998754 45
Q ss_pred CCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 224 DGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 224 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
.++||+|++...++++ ++++.++|||||++++...
T Consensus 160 ~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~lv~~~~ 194 (227)
T 2pbf_A 160 LGLFDAIHVGASASEL------PEILVDLLAENGKLIIPIE 194 (227)
T ss_dssp HCCEEEEEECSBBSSC------CHHHHHHEEEEEEEEEEEE
T ss_pred CCCcCEEEECCchHHH------HHHHHHhcCCCcEEEEEEc
Confidence 6789999999888875 4788999999999999764
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.6e-13 Score=127.51 Aligned_cols=117 Identities=20% Similarity=0.152 Sum_probs=97.0
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (371)
+...++..+...+ +.+|||+|||+|.+++.++... ...|+|+|+++.+++.|+++++..++. ++++.++|+.
T Consensus 191 la~~l~~~~~~~~-----~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~-~i~~~~~D~~ 264 (354)
T 3tma_A 191 LAQALLRLADARP-----GMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLS-WIRFLRADAR 264 (354)
T ss_dssp HHHHHHHHTTCCT-----TCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCT-TCEEEECCGG
T ss_pred HHHHHHHHhCCCC-----CCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCC-ceEEEeCChh
Confidence 4445556665554 7899999999999999999975 379999999999999999999999986 8999999999
Q ss_pred CCCCCCCccceEEccccccCcC--------CHHHHHHHHHHhcCCCcEEEEEe
Q 017428 219 QQPFPDGQFDLVWSMESGEHMP--------DKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 219 ~~~~~~~~fD~v~~~~~l~~~~--------~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+++.+.+.||+|+++-.+.... ....+++++.++|||||.+++..
T Consensus 265 ~~~~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t 317 (354)
T 3tma_A 265 HLPRFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLT 317 (354)
T ss_dssp GGGGTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred hCccccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 9876677899999965443221 12678999999999999999976
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.51 E-value=1.1e-13 Score=123.28 Aligned_cols=105 Identities=23% Similarity=0.429 Sum_probs=84.9
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHc--------CCCCCeEEEEcCCCC-CC--CCCC
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAAR--------GLADKVSFQVGDALQ-QP--FPDG 225 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~--------~~~~~v~~~~~d~~~-~~--~~~~ 225 (371)
++.+|||||||+|.++..+++.. +..|+|+|+|+.+++.|+++++.. ++ .++.++.+|+.+ ++ ++.+
T Consensus 49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~-~nv~~~~~D~~~~l~~~~~~~ 127 (246)
T 2vdv_E 49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGF-QNINVLRGNAMKFLPNFFEKG 127 (246)
T ss_dssp CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTT-TTEEEEECCTTSCGGGTSCTT
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCC-CcEEEEeccHHHHHHHhcccc
Confidence 46899999999999999999986 568999999999999999988765 66 589999999987 44 6678
Q ss_pred ccceEEccccccCcCCH--------HHHHHHHHHhcCCCcEEEEEe
Q 017428 226 QFDLVWSMESGEHMPDK--------SKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 226 ~fD~v~~~~~l~~~~~~--------~~~l~~~~~~LkpgG~l~i~~ 263 (371)
++|.|++...-.+.... ..+++++.++|+|||.|++..
T Consensus 128 ~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t 173 (246)
T 2vdv_E 128 QLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTIT 173 (246)
T ss_dssp CEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence 89999854321111000 489999999999999999964
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=5.7e-14 Score=117.86 Aligned_cols=96 Identities=22% Similarity=0.278 Sum_probs=83.2
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------CCCCcc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------FPDGQF 227 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~~f 227 (371)
++.+|||+|||+|.++..+++.+ +.+|+|+|+++ +++. .++.+..+|+.+.+ +++++|
T Consensus 22 ~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~-----------~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 89 (180)
T 1ej0_A 22 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI-----------VGVDFLQGDFRDELVMKALLERVGDSKV 89 (180)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC-----------TTEEEEESCTTSHHHHHHHHHHHTTCCE
T ss_pred CCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc-----------CcEEEEEcccccchhhhhhhccCCCCce
Confidence 47899999999999999999986 47999999999 6532 47999999998876 667899
Q ss_pred ceEEccccccCcCCH-----------HHHHHHHHHhcCCCcEEEEEecc
Q 017428 228 DLVWSMESGEHMPDK-----------SKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 228 D~v~~~~~l~~~~~~-----------~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
|+|++...+++..+. ..+++++.++|+|||.+++..+.
T Consensus 90 D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 138 (180)
T 1ej0_A 90 QVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ 138 (180)
T ss_dssp EEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred eEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 999999888887665 68999999999999999997753
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.7e-13 Score=123.52 Aligned_cols=96 Identities=28% Similarity=0.403 Sum_probs=84.0
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l 236 (371)
++.+|||||||+|.++..+++.+ +.+|+|+|+|+.+++.|+++. .++.+..+|+.++++++++||+|++..+.
T Consensus 85 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~fD~v~~~~~~ 158 (269)
T 1p91_A 85 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRLPFSDTSMDAIIRIYAP 158 (269)
T ss_dssp TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSCSBCTTCEEEEEEESCC
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC------CCcEEEEcchhhCCCCCCceeEEEEeCCh
Confidence 37899999999999999999976 689999999999999998763 46899999999988888999999987653
Q ss_pred cCcCCHHHHHHHHHHhcCCCcEEEEEeccC
Q 017428 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCH 266 (371)
Q Consensus 237 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 266 (371)
. .++++.++|||||.+++.....
T Consensus 159 ~-------~l~~~~~~L~pgG~l~~~~~~~ 181 (269)
T 1p91_A 159 C-------KAEELARVVKPGGWVITATPGP 181 (269)
T ss_dssp C-------CHHHHHHHEEEEEEEEEEEECT
T ss_pred h-------hHHHHHHhcCCCcEEEEEEcCH
Confidence 2 4799999999999999988654
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.50 E-value=6.3e-14 Score=123.27 Aligned_cols=100 Identities=18% Similarity=0.293 Sum_probs=85.5
Q ss_pred CCCEEEEECCCcChHHHHHHHHcC-------CEEEEEeCCHHHHHHHHHHHHHcCC----CCCeEEEEcCCCCCCCCC-C
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFG-------AKCQGITLSPVQAQRANALAAARGL----ADKVSFQVGDALQQPFPD-G 225 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~-------~~v~gvD~s~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~~-~ 225 (371)
++.+|||+|||+|.++..+++..+ .+|+++|+++.+++.|++++...+. ..++.+..+|+.+ ++++ +
T Consensus 84 ~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~~~~ 162 (227)
T 1r18_A 84 PGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK-GYPPNA 162 (227)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGG-CCGGGC
T ss_pred CCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCccc-CCCcCC
Confidence 478999999999999999998664 5999999999999999999876541 2579999999887 4444 7
Q ss_pred ccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 226 QFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 226 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
+||+|++...++++. +++.+.|||||++++...
T Consensus 163 ~fD~I~~~~~~~~~~------~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 163 PYNAIHVGAAAPDTP------TELINQLASGGRLIVPVG 195 (227)
T ss_dssp SEEEEEECSCBSSCC------HHHHHTEEEEEEEEEEES
T ss_pred CccEEEECCchHHHH------HHHHHHhcCCCEEEEEEe
Confidence 899999999998875 688999999999999764
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-13 Score=129.87 Aligned_cols=101 Identities=24% Similarity=0.234 Sum_probs=86.8
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcc---cc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSM---ES 235 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~---~~ 235 (371)
+++|||||||+|.++..+++....+|++||.|+ +++.|++.++.+++.++|.++.+|++++.++ ++||+|++- ..
T Consensus 84 ~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lp-e~~DvivsE~~~~~ 161 (376)
T 4hc4_A 84 GKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVELP-EQVDAIVSEWMGYG 161 (376)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCBTT
T ss_pred CCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecCC-ccccEEEeeccccc
Confidence 789999999999999887776335899999996 8899999999999999999999999998776 789999983 34
Q ss_pred ccCcCCHHHHHHHHHHhcCCCcEEEE
Q 017428 236 GEHMPDKSKFVSELARVTAPAGTIII 261 (371)
Q Consensus 236 l~~~~~~~~~l~~~~~~LkpgG~l~i 261 (371)
+.+-.....++....++|||||.++-
T Consensus 162 l~~e~~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 162 LLHESMLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp BTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred ccccchhhhHHHHHHhhCCCCceECC
Confidence 44445678899999999999999874
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.50 E-value=6.8e-14 Score=130.91 Aligned_cols=102 Identities=22% Similarity=0.299 Sum_probs=88.9
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
+.+|||+|||+|.++..+++.. ..+|+++|+|+.+++.+++++...++ .+++..+|+.+.+ +++||+|+++..++
T Consensus 197 ~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~--~~~~~~~d~~~~~--~~~fD~Iv~~~~~~ 272 (343)
T 2pjd_A 197 KGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGV--EGEVFASNVFSEV--KGRFDMIISNPPFH 272 (343)
T ss_dssp CSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTC--CCEEEECSTTTTC--CSCEEEEEECCCCC
T ss_pred CCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC--CCEEEEccccccc--cCCeeEEEECCCcc
Confidence 6799999999999999999986 46999999999999999999988876 3678899987653 67899999999887
Q ss_pred C-----cCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 238 H-----MPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 238 ~-----~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
+ ..+...+++++.++|||||.+++...
T Consensus 273 ~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 304 (343)
T 2pjd_A 273 DGMQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (343)
T ss_dssp SSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred cCccCCHHHHHHHHHHHHHhCCCCcEEEEEEc
Confidence 5 24568899999999999999999864
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-14 Score=128.60 Aligned_cols=155 Identities=13% Similarity=0.096 Sum_probs=93.3
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCC--CCeEEEE-cC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLA--DKVSFQV-GD 216 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~--~~v~~~~-~d 216 (371)
.+..++..+.+.. ++.+|||||||||.++..+++. + .+|+|+|+|+.|++.|+++....... .++.+.. .|
T Consensus 24 kL~~~L~~~~~~~----~g~~VLDiGcGtG~~t~~la~~-g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~ 98 (232)
T 3opn_A 24 KLEKALKEFHLEI----NGKTCLDIGSSTGGFTDVMLQN-GAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLAD 98 (232)
T ss_dssp HHHHHHHHTTCCC----TTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGG
T ss_pred HHHHHHHHcCCCC----CCCEEEEEccCCCHHHHHHHhc-CCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhH
Confidence 3455666665543 4679999999999999999987 5 49999999999999877642111000 0121111 12
Q ss_pred CCCCCCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCC--
Q 017428 217 ALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLP-- 294 (371)
Q Consensus 217 ~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 294 (371)
+....+....||++++ ++ ..++++++++|||||.+++.. . +..... .. .........
T Consensus 99 ~~~~~~d~~~~D~v~~-----~l---~~~l~~i~rvLkpgG~lv~~~--~----p~~e~~----~~---~~~~~G~~~d~ 157 (232)
T 3opn_A 99 FEQGRPSFTSIDVSFI-----SL---DLILPPLYEILEKNGEVAALI--K----PQFEAG----RE---QVGKNGIIRDP 157 (232)
T ss_dssp CCSCCCSEEEECCSSS-----CG---GGTHHHHHHHSCTTCEEEEEE--C----HHHHSC----HH---HHC-CCCCCCH
T ss_pred cCcCCCCEEEEEEEhh-----hH---HHHHHHHHHhccCCCEEEEEE--C----cccccC----HH---HhCcCCeecCc
Confidence 2111112234444433 33 678999999999999999963 1 100000 00 000000000
Q ss_pred --CCCCHHHHHHHHHhCCCceEEEEecCC
Q 017428 295 --AWCSTADYVKLLQSLSLEDIKAEDWSQ 321 (371)
Q Consensus 295 --~~~~~~~~~~ll~~aGF~~v~~~~~~~ 321 (371)
...+.+++.++++++||+++.+.....
T Consensus 158 ~~~~~~~~~l~~~l~~aGf~v~~~~~~pi 186 (232)
T 3opn_A 158 KVHQMTIEKVLKTATQLGFSVKGLTFSPI 186 (232)
T ss_dssp HHHHHHHHHHHHHHHHHTEEEEEEEECSS
T ss_pred chhHHHHHHHHHHHHHCCCEEEEEEEccC
Confidence 013678999999999999888765433
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-13 Score=128.48 Aligned_cols=106 Identities=15% Similarity=0.152 Sum_probs=87.4
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCC-CeEEEEcCCCCCCC----CCCccceEEcc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLAD-KVSFQVGDALQQPF----PDGQFDLVWSM 233 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~-~v~~~~~d~~~~~~----~~~~fD~v~~~ 233 (371)
+.+|||+|||+|.++..++.. +++|+++|+|+.+++.|+++++.+++.+ +++++++|+.+... ..++||+|++.
T Consensus 154 ~~~VLDlgcGtG~~sl~la~~-ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~d 232 (332)
T 2igt_A 154 PLKVLNLFGYTGVASLVAAAA-GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTD 232 (332)
T ss_dssp CCEEEEETCTTCHHHHHHHHT-TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEEC
T ss_pred CCcEEEcccccCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEEEC
Confidence 689999999999999999986 6799999999999999999999888865 59999999877421 14689999984
Q ss_pred cc----------ccCcCCHHHHHHHHHHhcCCCcEEEEEecc
Q 017428 234 ES----------GEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 234 ~~----------l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
-. +.+..+...+++++.++|+|||.+++...+
T Consensus 233 PP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~ 274 (332)
T 2igt_A 233 PPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY 274 (332)
T ss_dssp CCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred CccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECC
Confidence 32 122345678999999999999998876643
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-13 Score=122.62 Aligned_cols=97 Identities=15% Similarity=0.225 Sum_probs=80.6
Q ss_pred CCEEEEECCCcChHHHHHHHH----c-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC---CCCC-Cccce
Q 017428 159 PKNVVDVGCGIGGSSRYLAKK----F-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ---PFPD-GQFDL 229 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~----~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~-~~fD~ 229 (371)
+.+|||||||+|..+..+++. . +++|+|+|+|+.+++.|+. ..++++++++|+.+. +... .+||+
T Consensus 82 ~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~------~~~~v~~~~gD~~~~~~l~~~~~~~fD~ 155 (236)
T 2bm8_A 82 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS------DMENITLHQGDCSDLTTFEHLREMAHPL 155 (236)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG------GCTTEEEEECCSSCSGGGGGGSSSCSSE
T ss_pred CCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc------cCCceEEEECcchhHHHHHhhccCCCCE
Confidence 679999999999999999987 2 6899999999999988762 236899999999884 4333 47999
Q ss_pred EEccccccCcCCHHHHHHHHHH-hcCCCcEEEEEec
Q 017428 230 VWSMESGEHMPDKSKFVSELAR-VTAPAGTIIIVTW 264 (371)
Q Consensus 230 v~~~~~l~~~~~~~~~l~~~~~-~LkpgG~l~i~~~ 264 (371)
|++... | .+...++.++.+ +|||||++++.+.
T Consensus 156 I~~d~~--~-~~~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 156 IFIDNA--H-ANTFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp EEEESS--C-SSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred EEECCc--h-HhHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 997654 3 377889999997 9999999999764
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.6e-13 Score=121.24 Aligned_cols=105 Identities=19% Similarity=0.253 Sum_probs=89.1
Q ss_pred CCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC----CCCC--CccceE
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ----PFPD--GQFDLV 230 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~--~~fD~v 230 (371)
+.+|||||||+|..+..+++.+ +.+|+++|+++.+++.|++++...++.+++++..+|+.+. +..+ ++||+|
T Consensus 73 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V 152 (232)
T 3cbg_A 73 AKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLI 152 (232)
T ss_dssp CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEE
T ss_pred CCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEE
Confidence 6799999999999999999876 4699999999999999999999888877899999997542 2223 789999
Q ss_pred EccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccC
Q 017428 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCH 266 (371)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 266 (371)
++... ..+...+++++.++|+|||++++.+...
T Consensus 153 ~~d~~---~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 185 (232)
T 3cbg_A 153 FIDAD---KRNYPRYYEIGLNLLRRGGLMVIDNVLW 185 (232)
T ss_dssp EECSC---GGGHHHHHHHHHHTEEEEEEEEEECTTG
T ss_pred EECCC---HHHHHHHHHHHHHHcCCCeEEEEeCCCc
Confidence 97654 3567889999999999999999976543
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-12 Score=124.10 Aligned_cols=103 Identities=12% Similarity=-0.018 Sum_probs=86.6
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-CCC-CCCccceEEccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-QPF-PDGQFDLVWSME 234 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-~~~~fD~v~~~~ 234 (371)
++.+|||+| |+|.++..++... ..+|+|+|+|+.+++.|+++++..++. +++++.+|+.+ ++. .+++||+|+++.
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~l~~~~~~~fD~Vi~~~ 249 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYE-DIEIFTFDLRKPLPDYALHKFDTFITDP 249 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCC-CEEEECCCTTSCCCTTTSSCBSEEEECC
T ss_pred CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEEChhhhhchhhccCCccEEEECC
Confidence 378999999 9999999998874 369999999999999999999988885 89999999988 553 356899999986
Q ss_pred cccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 235 SGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 235 ~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
.++.. ....+++++.++|||||++++..
T Consensus 250 p~~~~-~~~~~l~~~~~~LkpgG~~~~~~ 277 (373)
T 2qm3_A 250 PETLE-AIRAFVGRGIATLKGPRCAGYFG 277 (373)
T ss_dssp CSSHH-HHHHHHHHHHHTBCSTTCEEEEE
T ss_pred CCchH-HHHHHHHHHHHHcccCCeEEEEE
Confidence 55433 35789999999999999654444
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=3.9e-14 Score=132.34 Aligned_cols=96 Identities=21% Similarity=0.265 Sum_probs=81.7
Q ss_pred CCEEEEECCC------cChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC------C
Q 017428 159 PKNVVDVGCG------IGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP------D 224 (371)
Q Consensus 159 ~~~VLDlG~G------tG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~------~ 224 (371)
+.+||||||| +|..+..+++.+ +++|+|+|+|+.|.. ..++++|+++|+.++++. +
T Consensus 217 ~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~~----------~~~rI~fv~GDa~dlpf~~~l~~~d 286 (419)
T 3sso_A 217 QVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSHV----------DELRIRTIQGDQNDAEFLDRIARRY 286 (419)
T ss_dssp CCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGGG----------CBTTEEEEECCTTCHHHHHHHHHHH
T ss_pred CCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHhh----------cCCCcEEEEecccccchhhhhhccc
Confidence 6899999999 788888887765 689999999999731 236899999999998766 6
Q ss_pred CccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEecc
Q 017428 225 GQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 225 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
++||+|++.. .+++.+...+|++++++|||||++++.++.
T Consensus 287 ~sFDlVisdg-sH~~~d~~~aL~el~rvLKPGGvlVi~Dl~ 326 (419)
T 3sso_A 287 GPFDIVIDDG-SHINAHVRTSFAALFPHVRPGGLYVIEDMW 326 (419)
T ss_dssp CCEEEEEECS-CCCHHHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred CCccEEEECC-cccchhHHHHHHHHHHhcCCCeEEEEEecc
Confidence 8999999864 466778899999999999999999998865
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.4e-13 Score=120.52 Aligned_cols=104 Identities=20% Similarity=0.285 Sum_probs=88.7
Q ss_pred CCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C--------------
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P-------------- 221 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-------------- 221 (371)
+.+|||||||+|..+..+++.+ +.+|+++|+++.+++.|++++...++.+++.+..+|+.+. +
T Consensus 61 ~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~ 140 (239)
T 2hnk_A 61 AKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASD 140 (239)
T ss_dssp CSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTT
T ss_pred cCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccccccc
Confidence 7899999999999999999986 5799999999999999999999888866799999997652 1
Q ss_pred CCC--CccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEecc
Q 017428 222 FPD--GQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 222 ~~~--~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
+++ ++||+|++... ..+...+++++.++|+|||++++.+..
T Consensus 141 f~~~~~~fD~I~~~~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~ 183 (239)
T 2hnk_A 141 FAFGPSSIDLFFLDAD---KENYPNYYPLILKLLKPGGLLIADNVL 183 (239)
T ss_dssp TCCSTTCEEEEEECSC---GGGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred ccCCCCCcCEEEEeCC---HHHHHHHHHHHHHHcCCCeEEEEEccc
Confidence 222 78999998754 346678999999999999999997643
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=5.1e-13 Score=126.28 Aligned_cols=126 Identities=26% Similarity=0.212 Sum_probs=101.4
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l 236 (371)
++.+|||+|||+|.+++.++... ..+|+|+|+|+.+++.|++++...++.+++++.++|+.++++++++||+|+++-.+
T Consensus 217 ~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~npPy 296 (373)
T 3tm4_A 217 DGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNLPY 296 (373)
T ss_dssp CSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEECCC
T ss_pred CCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECCCC
Confidence 37899999999999999999874 23899999999999999999999998778999999999988777899999997554
Q ss_pred cCc-------CC-HHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHh
Q 017428 237 EHM-------PD-KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQS 308 (371)
Q Consensus 237 ~~~-------~~-~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 308 (371)
... .+ ...+++++.++| ||.+++... +.+.+.+.+++
T Consensus 297 g~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~---------------------------------~~~~~~~~~~~ 341 (373)
T 3tm4_A 297 GLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITT---------------------------------EKKAIEEAIAE 341 (373)
T ss_dssp C------CCHHHHHHHHHHHHHHHE--EEEEEEEES---------------------------------CHHHHHHHHHH
T ss_pred CcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEEC---------------------------------CHHHHHHHHHH
Confidence 321 12 267888899988 566555441 45667788999
Q ss_pred CCCceEEEEe
Q 017428 309 LSLEDIKAED 318 (371)
Q Consensus 309 aGF~~v~~~~ 318 (371)
.||.......
T Consensus 342 ~G~~~~~~~~ 351 (373)
T 3tm4_A 342 NGFEIIHHRV 351 (373)
T ss_dssp TTEEEEEEEE
T ss_pred cCCEEEEEEE
Confidence 9999876544
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.1e-13 Score=120.76 Aligned_cols=103 Identities=18% Similarity=0.270 Sum_probs=88.6
Q ss_pred CCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C-C-----CCCccce
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P-F-----PDGQFDL 229 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~-----~~~~fD~ 229 (371)
+.+|||||||+|..+..+++.+ +.+|+++|+++.+++.|+++++..++.++++++.+|+.+. + + +.++||+
T Consensus 71 ~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~ 150 (237)
T 3c3y_A 71 AKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDF 150 (237)
T ss_dssp CCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEEE
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcCE
Confidence 6899999999999999999986 5799999999999999999999999877899999998663 2 2 2578999
Q ss_pred EEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 230 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
|++... ..+...+++++.++|+|||.+++.+.
T Consensus 151 I~~d~~---~~~~~~~l~~~~~~L~pGG~lv~d~~ 182 (237)
T 3c3y_A 151 GFVDAD---KPNYIKYHERLMKLVKVGGIVAYDNT 182 (237)
T ss_dssp EEECSC---GGGHHHHHHHHHHHEEEEEEEEEECT
T ss_pred EEECCc---hHHHHHHHHHHHHhcCCCeEEEEecC
Confidence 997642 24668899999999999999988664
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=3.2e-13 Score=122.81 Aligned_cols=101 Identities=23% Similarity=0.303 Sum_probs=84.2
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCcc---ceEEccc-
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQF---DLVWSME- 234 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f---D~v~~~~- 234 (371)
+.+|||+|||+|.++..++...+.+|+|+|+|+.+++.|+++++..++.++++|+++|+.+. ++ ++| |+|+++-
T Consensus 124 ~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~-~~-~~f~~~D~IvsnPP 201 (284)
T 1nv8_A 124 IKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP-FK-EKFASIEMILSNPP 201 (284)
T ss_dssp CCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGG-GG-GGTTTCCEEEECCC
T ss_pred CCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhh-cc-cccCCCCEEEEcCC
Confidence 67999999999999999988735799999999999999999999999876799999999873 33 579 9999972
Q ss_pred -----------cccCcCC--------HHHHHHHHH-HhcCCCcEEEEE
Q 017428 235 -----------SGEHMPD--------KSKFVSELA-RVTAPAGTIIIV 262 (371)
Q Consensus 235 -----------~l~~~~~--------~~~~l~~~~-~~LkpgG~l~i~ 262 (371)
+. |-+. ...+++++. +.|+|||++++.
T Consensus 202 yi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e 248 (284)
T 1nv8_A 202 YVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTSGKIVLME 248 (284)
T ss_dssp CBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEE
T ss_pred CCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEE
Confidence 22 2211 227899999 999999999984
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=3.9e-13 Score=118.15 Aligned_cols=104 Identities=16% Similarity=0.225 Sum_probs=88.7
Q ss_pred CCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--CCCC----CccceE
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--PFPD----GQFDLV 230 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~----~~fD~v 230 (371)
+.+|||+|||+|..+..+++.+ +.+|+++|+++.+++.|+++++..++.++++++.+|+.+. .+.. ++||+|
T Consensus 70 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v 149 (229)
T 2avd_A 70 AKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVA 149 (229)
T ss_dssp CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEE
T ss_pred CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEE
Confidence 7899999999999999999875 5799999999999999999999988878999999998653 1211 689999
Q ss_pred EccccccCcCCHHHHHHHHHHhcCCCcEEEEEecc
Q 017428 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
++... ..+...+++++.++|+|||.+++.+..
T Consensus 150 ~~d~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~ 181 (229)
T 2avd_A 150 VVDAD---KENCSAYYERCLQLLRPGGILAVLRVL 181 (229)
T ss_dssp EECSC---STTHHHHHHHHHHHEEEEEEEEEECCS
T ss_pred EECCC---HHHHHHHHHHHHHHcCCCeEEEEECCC
Confidence 98654 346678999999999999999997643
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.5e-13 Score=122.86 Aligned_cols=102 Identities=20% Similarity=0.060 Sum_probs=89.2
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l 236 (371)
++.+|||+|||+|.++..+++.. ..+|+|+|+++.+++.|+++++.+++. ++.++.+|+.+.+. .++||+|++....
T Consensus 119 ~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~-~~~~~~~d~~~~~~-~~~~D~Vi~d~p~ 196 (272)
T 3a27_A 119 ENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLN-NVIPILADNRDVEL-KDVADRVIMGYVH 196 (272)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCS-SEEEEESCGGGCCC-TTCEEEEEECCCS
T ss_pred CCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEECChHHcCc-cCCceEEEECCcc
Confidence 47899999999999999999985 569999999999999999999999884 79999999988743 5789999987543
Q ss_pred cCcCCHHHHHHHHHHhcCCCcEEEEEecc
Q 017428 237 EHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 237 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
+...++.++.+.|+|||++++..+.
T Consensus 197 ----~~~~~l~~~~~~LkpgG~l~~s~~~ 221 (272)
T 3a27_A 197 ----KTHKFLDKTFEFLKDRGVIHYHETV 221 (272)
T ss_dssp ----SGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred ----cHHHHHHHHHHHcCCCCEEEEEEcC
Confidence 5667899999999999999988754
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.45 E-value=4.2e-13 Score=115.45 Aligned_cols=95 Identities=19% Similarity=0.299 Sum_probs=77.0
Q ss_pred CCCEEEEECCCcChHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-------------
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFG---AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP------------- 221 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------------- 221 (371)
++.+|||+|||+|.++..+++.++ .+|+|+|+|+.+ .. +++.+.++|+.+.+
T Consensus 22 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~-~~v~~~~~d~~~~~~~~~~~~~~i~~~ 89 (201)
T 2plw_A 22 KNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PI-PNVYFIQGEIGKDNMNNIKNINYIDNM 89 (201)
T ss_dssp TTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CC-TTCEEEECCTTTTSSCCC---------
T ss_pred CCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CC-CCceEEEccccchhhhhhccccccccc
Confidence 378999999999999999999863 789999999831 12 47999999998876
Q ss_pred ------------CCCCccceEEccccccCcC----CH-------HHHHHHHHHhcCCCcEEEEEec
Q 017428 222 ------------FPDGQFDLVWSMESGEHMP----DK-------SKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 222 ------------~~~~~fD~v~~~~~l~~~~----~~-------~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
+++++||+|++..++++.. +. ..+++++.++|||||.+++..+
T Consensus 90 ~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 155 (201)
T 2plw_A 90 NNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMY 155 (201)
T ss_dssp --CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEe
Confidence 5667999999987776642 22 2378999999999999998654
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=7.9e-13 Score=119.06 Aligned_cols=128 Identities=16% Similarity=0.069 Sum_probs=102.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
++.+|||+|||+|.+++.++....++|+++|+++.+++.++++++.+++.+++.++.+|+.+.+ ..+.||.|++...
T Consensus 125 ~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~-~~~~~D~Vi~~~p-- 201 (278)
T 3k6r_A 125 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP-GENIADRILMGYV-- 201 (278)
T ss_dssp TTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC-CCSCEEEEEECCC--
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhc-cccCCCEEEECCC--
Confidence 4899999999999999999987457999999999999999999999999889999999998875 3578999987643
Q ss_pred CcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceE
Q 017428 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDI 314 (371)
Q Consensus 238 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v 314 (371)
+....++..+.++|||||+|.+.++...... .-...+.++++.++.|+.+.
T Consensus 202 --~~~~~~l~~a~~~lk~gG~ih~~~~~~e~~~------------------------~~~~~e~i~~~~~~~g~~v~ 252 (278)
T 3k6r_A 202 --VRTHEFIPKALSIAKDGAIIHYHNTVPEKLM------------------------PREPFETFKRITKEYGYDVE 252 (278)
T ss_dssp --SSGGGGHHHHHHHEEEEEEEEEEEEEEGGGT------------------------TTTTHHHHHHHHHHTTCEEE
T ss_pred --CcHHHHHHHHHHHcCCCCEEEEEeeeccccc------------------------chhHHHHHHHHHHHcCCcEE
Confidence 2334678888899999999988765322110 01235677888899999754
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.9e-12 Score=125.39 Aligned_cols=107 Identities=21% Similarity=0.311 Sum_probs=90.6
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-C-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCccceEEc-
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF-G-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWS- 232 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~-~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~v~~- 232 (371)
++.+|||+|||+|..+..+++.. + ..|+++|+++.+++.++++++..|+ .++.+..+|+.+.+ +++++||+|++
T Consensus 259 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~fD~Vl~D 337 (450)
T 2yxl_A 259 PGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGI-KIVKPLVKDARKAPEIIGEEVADKVLLD 337 (450)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCTTCCSSSSCSSCEEEEEEE
T ss_pred CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC-CcEEEEEcChhhcchhhccCCCCEEEEc
Confidence 37899999999999999999976 3 7999999999999999999999887 47999999998875 55578999996
Q ss_pred -----cccccCcCCH----------------HHHHHHHHHhcCCCcEEEEEecc
Q 017428 233 -----MESGEHMPDK----------------SKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 233 -----~~~l~~~~~~----------------~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
..++.+.++. ..+++++.++|||||.|++.+.+
T Consensus 338 ~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs 391 (450)
T 2yxl_A 338 APCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCS 391 (450)
T ss_dssp CCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESC
T ss_pred CCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 2344444443 57899999999999999998754
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.42 E-value=5.5e-13 Score=120.72 Aligned_cols=107 Identities=11% Similarity=0.110 Sum_probs=89.3
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-C-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC----CCCccceEE
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF-G-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF----PDGQFDLVW 231 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~-~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~fD~v~ 231 (371)
++.+|||+|||+|..+..+++.. + .+|+++|+++.+++.++++++..++. ++.++.+|+.+.+. ..++||+|+
T Consensus 83 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~~fD~Vl 161 (274)
T 3ajd_A 83 EDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVL-NTIIINADMRKYKDYLLKNEIFFDKIL 161 (274)
T ss_dssp TTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCC-cEEEEeCChHhcchhhhhccccCCEEE
Confidence 38899999999999999999876 4 79999999999999999999999885 89999999877643 257899999
Q ss_pred ccccccC------------------cCCHHHHHHHHHHhcCCCcEEEEEecc
Q 017428 232 SMESGEH------------------MPDKSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 232 ~~~~l~~------------------~~~~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
+.-.... ......+++++.++|||||.+++.+.+
T Consensus 162 ~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs 213 (274)
T 3ajd_A 162 LDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCS 213 (274)
T ss_dssp EEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred EcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECC
Confidence 8622211 134578999999999999999998754
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.40 E-value=4.7e-13 Score=121.84 Aligned_cols=88 Identities=24% Similarity=0.308 Sum_probs=74.2
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (371)
.++.++..+...+ +.+|||||||+|.++..+++. +.+|+|+|+++.+++.+++++...+..++++++.+|+.+.
T Consensus 16 i~~~i~~~~~~~~-----~~~VLDiG~G~G~lt~~L~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~ 89 (285)
T 1zq9_A 16 IINSIIDKAALRP-----TDVVLEVGPGTGNMTVKLLEK-AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKT 89 (285)
T ss_dssp HHHHHHHHTCCCT-----TCEEEEECCTTSTTHHHHHHH-SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTS
T ss_pred HHHHHHHhcCCCC-----CCEEEEEcCcccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecc
Confidence 5666777776654 789999999999999999998 6799999999999999999987666556899999999887
Q ss_pred CCCCCccceEEccccc
Q 017428 221 PFPDGQFDLVWSMESG 236 (371)
Q Consensus 221 ~~~~~~fD~v~~~~~l 236 (371)
+++ .||+|+++..+
T Consensus 90 ~~~--~fD~vv~nlpy 103 (285)
T 1zq9_A 90 DLP--FFDTCVANLPY 103 (285)
T ss_dssp CCC--CCSEEEEECCG
T ss_pred cch--hhcEEEEecCc
Confidence 654 79999986443
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.1e-11 Score=107.19 Aligned_cols=127 Identities=12% Similarity=-0.043 Sum_probs=96.9
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
++.+|||+|||+|.++..+++....+|+|+|+++.+++.+++++...++ ++.++.+|+.+++ ++||+|+++..++
T Consensus 49 ~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~---~~~D~v~~~~p~~ 123 (207)
T 1wy7_A 49 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGDVSEFN---SRVDIVIMNPPFG 123 (207)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESCGGGCC---CCCSEEEECCCCS
T ss_pred CcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC--CEEEEECchHHcC---CCCCEEEEcCCCc
Confidence 3789999999999999999887334799999999999999999887776 7999999998864 5899999988776
Q ss_pred CcC--CHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEE
Q 017428 238 HMP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIK 315 (371)
Q Consensus 238 ~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~ 315 (371)
+.. ....+++++.+++ ||.+++. ... . .+.+.+.+.+++.||+...
T Consensus 124 ~~~~~~~~~~l~~~~~~l--~~~~~~~-~~~--------------~---------------~~~~~~~~~l~~~g~~~~~ 171 (207)
T 1wy7_A 124 SQRKHADRPFLLKAFEIS--DVVYSIH-LAK--------------P---------------EVRRFIEKFSWEHGFVVTH 171 (207)
T ss_dssp SSSTTTTHHHHHHHHHHC--SEEEEEE-ECC--------------H---------------HHHHHHHHHHHHTTEEEEE
T ss_pred cccCCchHHHHHHHHHhc--CcEEEEE-eCC--------------c---------------CCHHHHHHHHHHCCCeEEE
Confidence 663 3367889999988 5544332 100 0 0234466788999998766
Q ss_pred EEecCC
Q 017428 316 AEDWSQ 321 (371)
Q Consensus 316 ~~~~~~ 321 (371)
+.....
T Consensus 172 ~~~~~~ 177 (207)
T 1wy7_A 172 RLTTKI 177 (207)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 655443
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.37 E-value=2.7e-12 Score=109.79 Aligned_cols=107 Identities=19% Similarity=0.234 Sum_probs=79.9
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (371)
.+.++++...+-. ++.+|||+|||+|.++..+++. +.+|+|+|+++.. .+ +++.++++|+.+.
T Consensus 12 KL~ei~~~~~~~~----~g~~VLDlG~G~G~~s~~la~~-~~~V~gvD~~~~~-----------~~-~~v~~~~~D~~~~ 74 (191)
T 3dou_A 12 KLEFLLDRYRVVR----KGDAVIEIGSSPGGWTQVLNSL-ARKIISIDLQEME-----------EI-AGVRFIRCDIFKE 74 (191)
T ss_dssp HHHHHHHHHCCSC----TTCEEEEESCTTCHHHHHHTTT-CSEEEEEESSCCC-----------CC-TTCEEEECCTTSS
T ss_pred HHHHHHHHcCCCC----CCCEEEEEeecCCHHHHHHHHc-CCcEEEEeccccc-----------cC-CCeEEEEccccCH
Confidence 3445555554322 4899999999999999999988 8899999999842 12 5899999999886
Q ss_pred CCC-------C----CccceEEccccccCcC----C-------HHHHHHHHHHhcCCCcEEEEEec
Q 017428 221 PFP-------D----GQFDLVWSMESGEHMP----D-------KSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 221 ~~~-------~----~~fD~v~~~~~l~~~~----~-------~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
+.. . ++||+|++........ + ...+++.+.++|||||.+++..+
T Consensus 75 ~~~~~~~~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~ 140 (191)
T 3dou_A 75 TIFDDIDRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQF 140 (191)
T ss_dssp SHHHHHHHHHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 421 1 4899999865432211 1 24678899999999999998765
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.37 E-value=1.8e-12 Score=120.21 Aligned_cols=105 Identities=21% Similarity=0.342 Sum_probs=84.1
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHc--CC-CCCeEEEEcCCCCC--CCCCCccceEEc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAAR--GL-ADKVSFQVGDALQQ--PFPDGQFDLVWS 232 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~--~~-~~~v~~~~~d~~~~--~~~~~~fD~v~~ 232 (371)
+.+|||||||+|..+..+++.. ..+|+++|+|+.+++.|++++... ++ .++++++.+|+.+. ..++++||+|++
T Consensus 121 ~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlIi~ 200 (334)
T 1xj5_A 121 PKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVIV 200 (334)
T ss_dssp CCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEEE
T ss_pred CCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEEEE
Confidence 6899999999999999999865 579999999999999999987652 33 35899999998763 234578999998
Q ss_pred cccc--cCcCC--HHHHHHHHHHhcCCCcEEEEEe
Q 017428 233 MESG--EHMPD--KSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 233 ~~~l--~~~~~--~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
.... +...+ ...+++++.++|+|||++++..
T Consensus 201 d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 235 (334)
T 1xj5_A 201 DSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA 235 (334)
T ss_dssp CCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred CCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 5432 11111 3689999999999999999963
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.8e-12 Score=118.49 Aligned_cols=105 Identities=19% Similarity=0.245 Sum_probs=84.5
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--CCCCCccceEEcccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--PFPDGQFDLVWSMES 235 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD~v~~~~~ 235 (371)
+.+|||||||+|.++..+++.+ +.+|++||+++.+++.|++++.... .++++++++|+.+. .+++++||+|++...
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~-~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~ 168 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPR-APRVKIRVDDARMVAESFTPASRDVIIRDVF 168 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCC-TTTEEEEESCHHHHHHTCCTTCEEEEEECCS
T ss_pred CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccC-CCceEEEECcHHHHHhhccCCCCCEEEECCC
Confidence 3599999999999999999976 6799999999999999999875322 36899999998764 344688999998643
Q ss_pred ccCc-CC---HHHHHHHHHHhcCCCcEEEEEec
Q 017428 236 GEHM-PD---KSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 236 l~~~-~~---~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
.+.. +. ...++++++++|+|||++++...
T Consensus 169 ~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~ 201 (317)
T 3gjy_A 169 AGAITPQNFTTVEFFEHCHRGLAPGGLYVANCG 201 (317)
T ss_dssp TTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence 3221 11 26899999999999999998764
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.9e-12 Score=124.67 Aligned_cols=106 Identities=12% Similarity=0.119 Sum_probs=87.4
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-CCCCccceEEcc-
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-FPDGQFDLVWSM- 233 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~v~~~- 233 (371)
++.+|||+|||+|..+..+++.. ...|+++|+|+.+++.++++++..|+. +.++.+|+.+++ +..++||+|++.
T Consensus 101 ~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~--v~~~~~Da~~l~~~~~~~FD~Il~D~ 178 (464)
T 3m6w_A 101 PGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP--LAVTQAPPRALAEAFGTYFHRVLLDA 178 (464)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC--CEEECSCHHHHHHHHCSCEEEEEEEC
T ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe--EEEEECCHHHhhhhccccCCEEEECC
Confidence 48999999999999999999886 369999999999999999999999984 999999987764 235789999952
Q ss_pred -----ccccCcCCH----------------HHHHHHHHHhcCCCcEEEEEecc
Q 017428 234 -----ESGEHMPDK----------------SKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 234 -----~~l~~~~~~----------------~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
.++..-++. ..+++++.++|||||+|++++.+
T Consensus 179 PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs 231 (464)
T 3m6w_A 179 PCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCT 231 (464)
T ss_dssp CCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESC
T ss_pred CcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEecc
Confidence 222222221 67899999999999999998754
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=5.9e-12 Score=107.71 Aligned_cols=95 Identities=22% Similarity=0.331 Sum_probs=75.3
Q ss_pred CCCEEEEECCCcChHHHHHHHHcC----------CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEE-EcCCCCCC-----
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFG----------AKCQGITLSPVQAQRANALAAARGLADKVSFQ-VGDALQQP----- 221 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~----------~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~-~~d~~~~~----- 221 (371)
++.+|||+|||+|.++..+++.++ .+|+|+|+|+.+ .+ .++.+. .+|+.+.+
T Consensus 22 ~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~-~~~~~~~~~d~~~~~~~~~~ 89 (196)
T 2nyu_A 22 PGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PL-EGATFLCPADVTDPRTSQRI 89 (196)
T ss_dssp TTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CC-TTCEEECSCCTTSHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cC-CCCeEEEeccCCCHHHHHHH
Confidence 478999999999999999999864 789999999832 12 478899 99987643
Q ss_pred ---CCCCccceEEccccccCc----CCH-------HHHHHHHHHhcCCCcEEEEEec
Q 017428 222 ---FPDGQFDLVWSMESGEHM----PDK-------SKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 222 ---~~~~~fD~v~~~~~l~~~----~~~-------~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
+++++||+|++...++.. .+. ..+++++.++|||||.+++..+
T Consensus 90 ~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (196)
T 2nyu_A 90 LEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW 146 (196)
T ss_dssp HHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred HHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 345689999986654432 222 4789999999999999999875
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=2.1e-12 Score=118.43 Aligned_cols=106 Identities=19% Similarity=0.249 Sum_probs=83.0
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHH--cCC-CCCeEEEEcCCCCC-CCCCCccceEEcc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAA--RGL-ADKVSFQVGDALQQ-PFPDGQFDLVWSM 233 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~--~~~-~~~v~~~~~d~~~~-~~~~~~fD~v~~~ 233 (371)
+.+|||||||+|..+..+++.. ..+|+++|+++.+++.|++++.. .++ .++++++.+|+.+. +..+++||+|++.
T Consensus 96 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii~d 175 (304)
T 2o07_A 96 PRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITD 175 (304)
T ss_dssp CCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEEE
T ss_pred CCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEEEC
Confidence 6899999999999999999865 47999999999999999998765 233 46899999998652 3346889999985
Q ss_pred ccccCcC----CHHHHHHHHHHhcCCCcEEEEEec
Q 017428 234 ESGEHMP----DKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 234 ~~l~~~~----~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
......+ ....+++++.++|+|||++++...
T Consensus 176 ~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 210 (304)
T 2o07_A 176 SSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGE 210 (304)
T ss_dssp CC-----------CHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecC
Confidence 4332211 125689999999999999998763
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.34 E-value=1.7e-11 Score=114.64 Aligned_cols=103 Identities=18% Similarity=0.208 Sum_probs=87.1
Q ss_pred CCEEEEECCCcChHHHHHHHHc-C-----CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-G-----AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWS 232 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~-----~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~ 232 (371)
+.+|||+|||+|.++..+++.. . .+++|+|+++.+++.|+.++...++ ++.+..+|..... +.++||+|++
T Consensus 131 ~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~--~~~i~~~D~l~~~-~~~~fD~Ii~ 207 (344)
T 2f8l_A 131 NVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ--KMTLLHQDGLANL-LVDPVDVVIS 207 (344)
T ss_dssp EEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC--CCEEEESCTTSCC-CCCCEEEEEE
T ss_pred CCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC--CceEEECCCCCcc-ccCCccEEEE
Confidence 6899999999999999998876 2 6899999999999999999887776 6889999987643 4578999999
Q ss_pred cccccCcCCH------------------HHHHHHHHHhcCCCcEEEEEec
Q 017428 233 MESGEHMPDK------------------SKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 233 ~~~l~~~~~~------------------~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
+-.+++++.. ..+++++.+.|+|||+++++..
T Consensus 208 NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p 257 (344)
T 2f8l_A 208 DLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP 257 (344)
T ss_dssp ECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 8776655332 2589999999999999999874
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.34 E-value=1.1e-11 Score=106.52 Aligned_cols=87 Identities=16% Similarity=0.168 Sum_probs=70.9
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
++.+|||+|||+|.++..+++....+|+|+|+|+.+++.|++++. +++++++|+.+++ ++||+|+++..++
T Consensus 51 ~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~------~~~~~~~d~~~~~---~~~D~v~~~~p~~ 121 (200)
T 1ne2_A 51 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG------GVNFMVADVSEIS---GKYDTWIMNPPFG 121 (200)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT------TSEEEECCGGGCC---CCEEEEEECCCC-
T ss_pred CCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC------CCEEEECcHHHCC---CCeeEEEECCCch
Confidence 378999999999999999988622479999999999999998753 6899999998864 7899999999998
Q ss_pred CcCC--HHHHHHHHHHhc
Q 017428 238 HMPD--KSKFVSELARVT 253 (371)
Q Consensus 238 ~~~~--~~~~l~~~~~~L 253 (371)
++.+ ...+++++.+++
T Consensus 122 ~~~~~~~~~~l~~~~~~~ 139 (200)
T 1ne2_A 122 SVVKHSDRAFIDKAFETS 139 (200)
T ss_dssp ------CHHHHHHHHHHE
T ss_pred hccCchhHHHHHHHHHhc
Confidence 8854 257899999988
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.2e-11 Score=120.01 Aligned_cols=108 Identities=17% Similarity=0.216 Sum_probs=88.7
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC-CCCccceEEcc-
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF-PDGQFDLVWSM- 233 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~v~~~- 233 (371)
++.+|||+|||+|..+..+++.. ...|+++|+|+.+++.++++++..|+. ++.++.+|+.+++. .+++||+|++.
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~-nv~~~~~D~~~~~~~~~~~fD~Il~D~ 195 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGIS-NVALTHFDGRVFGAAVPEMFDAILLDA 195 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCCSTTHHHHSTTCEEEEEEEC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCCHHHhhhhccccCCEEEECC
Confidence 38899999999999999999986 379999999999999999999998884 79999999988653 45789999972
Q ss_pred -----ccccCcCC----------------HHHHHHHHHHhcCCCcEEEEEeccC
Q 017428 234 -----ESGEHMPD----------------KSKFVSELARVTAPAGTIIIVTWCH 266 (371)
Q Consensus 234 -----~~l~~~~~----------------~~~~l~~~~~~LkpgG~l~i~~~~~ 266 (371)
.++.+.++ ...++.++.++|||||+|++.+.+.
T Consensus 196 PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~ 249 (479)
T 2frx_A 196 PCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTL 249 (479)
T ss_dssp CCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred CcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccC
Confidence 22222222 2468999999999999999987543
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.33 E-value=6.9e-13 Score=122.09 Aligned_cols=104 Identities=19% Similarity=0.257 Sum_probs=81.0
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHc--CC-CCCeEEEEcCCCCC-CCCCCccceEEcc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAAR--GL-ADKVSFQVGDALQQ-PFPDGQFDLVWSM 233 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~--~~-~~~v~~~~~d~~~~-~~~~~~fD~v~~~ 233 (371)
+.+|||||||+|..+..+++.. ..+|+++|+++.+++.|++++... ++ .++++++.+|+.+. +..+++||+|++.
T Consensus 109 ~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~d 188 (314)
T 2b2c_A 109 PKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIITD 188 (314)
T ss_dssp CCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEEC
T ss_pred CCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEEc
Confidence 6899999999999999999865 579999999999999999987543 23 46899999998663 2345789999985
Q ss_pred ccccCcC-CH----HHHHHHHHHhcCCCcEEEEEe
Q 017428 234 ESGEHMP-DK----SKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 234 ~~l~~~~-~~----~~~l~~~~~~LkpgG~l~i~~ 263 (371)
.. .++. .. ..+++++.++|+|||++++..
T Consensus 189 ~~-~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 189 SS-DPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp CC--------------HHHHHHHHEEEEEEEEEEC
T ss_pred CC-CCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 43 2221 11 688999999999999999865
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.7e-12 Score=123.50 Aligned_cols=107 Identities=17% Similarity=0.168 Sum_probs=87.1
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-CCCCccceEEccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-FPDGQFDLVWSME 234 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~v~~~~ 234 (371)
++.+|||+|||+|..+..+++.. ...|+++|+++.+++.++++++..|+. ++.+...|+.+++ ..+++||+|++.-
T Consensus 105 ~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~-nv~v~~~Da~~l~~~~~~~FD~Il~Da 183 (456)
T 3m4x_A 105 PGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVS-NAIVTNHAPAELVPHFSGFFDRIVVDA 183 (456)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCS-SEEEECCCHHHHHHHHTTCEEEEEEEC
T ss_pred CCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhhhccccCCEEEECC
Confidence 48999999999999999999876 369999999999999999999999984 7999999987754 2357899999732
Q ss_pred c------ccCcCCH----------------HHHHHHHHHhcCCCcEEEEEecc
Q 017428 235 S------GEHMPDK----------------SKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 235 ~------l~~~~~~----------------~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
- +..-++. ..++.++.++|||||.|+.++.+
T Consensus 184 PCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 236 (456)
T 3m4x_A 184 PCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCT 236 (456)
T ss_dssp CCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESC
T ss_pred CCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEee
Confidence 2 2111111 27899999999999999998754
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.33 E-value=6e-13 Score=119.56 Aligned_cols=102 Identities=19% Similarity=0.259 Sum_probs=75.2
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH-HHcCCCCCeEEE--EcCCCCCCCCCCccceEEccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALA-AARGLADKVSFQ--VGDALQQPFPDGQFDLVWSME 234 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~~v~~~--~~d~~~~~~~~~~fD~v~~~~ 234 (371)
++.+|||||||+|.++..+++. .+|+|||+++ |+..+++.. .......++.++ ++|+.+++ +++||+|++..
T Consensus 74 ~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~V~sd~ 148 (265)
T 2oxt_A 74 LTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLP--VERTDVIMCDV 148 (265)
T ss_dssp CCEEEEEESCTTSHHHHHHHTS--TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC--CCCCSEEEECC
T ss_pred CCCEEEEeCcCCCHHHHHHHHc--CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCC--CCCCcEEEEeC
Confidence 4889999999999999999886 6899999999 532221110 000011168899 99998865 68899999987
Q ss_pred cccCcCCH----H---HHHHHHHHhcCCCc--EEEEEecc
Q 017428 235 SGEHMPDK----S---KFVSELARVTAPAG--TIIIVTWC 265 (371)
Q Consensus 235 ~l~~~~~~----~---~~l~~~~~~LkpgG--~l~i~~~~ 265 (371)
+ ++..++ . .+++.+.++||||| .+++..+.
T Consensus 149 ~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 149 G-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp C-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred c-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 6 444432 1 37899999999999 99987654
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.5e-12 Score=120.17 Aligned_cols=105 Identities=20% Similarity=0.225 Sum_probs=85.1
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHH--cC-C-CCCeEEEEcCCCCC-CCCCCccceEEc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAA--RG-L-ADKVSFQVGDALQQ-PFPDGQFDLVWS 232 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~--~~-~-~~~v~~~~~d~~~~-~~~~~~fD~v~~ 232 (371)
+.+|||||||+|.++..+++.. ..+|+++|+++.+++.|++++.. .+ + .++++++.+|+.+. +..+++||+|++
T Consensus 78 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 157 (314)
T 1uir_A 78 PKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVII 157 (314)
T ss_dssp CCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEEE
T ss_pred CCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEEE
Confidence 6899999999999999999865 57999999999999999998764 22 2 36899999998763 334678999998
Q ss_pred cccccC---cC--C--HHHHHHHHHHhcCCCcEEEEEe
Q 017428 233 MESGEH---MP--D--KSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 233 ~~~l~~---~~--~--~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
....+. -+ . ...++++++++|+|||.+++..
T Consensus 158 d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 195 (314)
T 1uir_A 158 DLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (314)
T ss_dssp ECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence 765433 11 1 3689999999999999999964
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=3.2e-13 Score=122.01 Aligned_cols=102 Identities=18% Similarity=0.141 Sum_probs=75.5
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH-HHcCCCCCeEEE--EcCCCCCCCCCCccceEEccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALA-AARGLADKVSFQ--VGDALQQPFPDGQFDLVWSME 234 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~~v~~~--~~d~~~~~~~~~~fD~v~~~~ 234 (371)
++.+|||||||+|.++..+++. .+|+|+|+++ |+..+++.. .......++.++ ++|+.+++ +++||+|++..
T Consensus 82 ~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~Vvsd~ 156 (276)
T 2wa2_A 82 LKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME--PFQADTVLCDI 156 (276)
T ss_dssp CCEEEEEESCTTCHHHHHHHTS--TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC--CCCCSEEEECC
T ss_pred CCCEEEEeccCCCHHHHHHHHc--CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC--CCCcCEEEECC
Confidence 4889999999999999999987 5899999999 543322110 000011168899 99998865 68899999987
Q ss_pred cccCcCCH----H---HHHHHHHHhcCCCc--EEEEEecc
Q 017428 235 SGEHMPDK----S---KFVSELARVTAPAG--TIIIVTWC 265 (371)
Q Consensus 235 ~l~~~~~~----~---~~l~~~~~~LkpgG--~l~i~~~~ 265 (371)
+ ++..++ . .+++++.++||||| .+++..+.
T Consensus 157 ~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 157 G-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp C-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred C-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence 7 444332 1 37899999999999 99986654
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.9e-12 Score=118.48 Aligned_cols=105 Identities=16% Similarity=0.165 Sum_probs=82.0
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHH--cCC-CCCeEEEEcCCCCC-CCCCCccceEEcc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAA--RGL-ADKVSFQVGDALQQ-PFPDGQFDLVWSM 233 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~--~~~-~~~v~~~~~d~~~~-~~~~~~fD~v~~~ 233 (371)
+.+|||||||+|..+..+++.. ..+|+++|+++.+++.|++++.. .++ .++++++.+|+.+. +..+++||+|++.
T Consensus 91 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d 170 (296)
T 1inl_A 91 PKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIID 170 (296)
T ss_dssp CCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEEE
T ss_pred CCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEEc
Confidence 6899999999999999999875 57999999999999999998754 223 36899999997653 3345789999975
Q ss_pred ccccCcC-----CHHHHHHHHHHhcCCCcEEEEEe
Q 017428 234 ESGEHMP-----DKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 234 ~~l~~~~-----~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
..-..+. ....+++++.++|+|||++++..
T Consensus 171 ~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 205 (296)
T 1inl_A 171 STDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET 205 (296)
T ss_dssp C----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred CCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 3221121 12689999999999999999964
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.6e-12 Score=123.35 Aligned_cols=106 Identities=16% Similarity=0.057 Sum_probs=85.7
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCC-CeEEEEcCCCCC-C-C--CCCccceEEcc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLAD-KVSFQVGDALQQ-P-F--PDGQFDLVWSM 233 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~-~v~~~~~d~~~~-~-~--~~~~fD~v~~~ 233 (371)
+.+|||+|||+|.++..++.....+|+|+|+|+.+++.|+++++.+++.+ +++|+++|+.+. + . ..++||+|++.
T Consensus 213 ~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii~D 292 (385)
T 2b78_A 213 GKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIIID 292 (385)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEEEC
Confidence 78999999999999999998623489999999999999999999999865 899999998763 2 1 24589999985
Q ss_pred ccc-----cCcC----CHHHHHHHHHHhcCCCcEEEEEec
Q 017428 234 ESG-----EHMP----DKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 234 ~~l-----~~~~----~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
-.. .+.. +...++..+.++|+|||.|++...
T Consensus 293 PP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~ 332 (385)
T 2b78_A 293 PPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN 332 (385)
T ss_dssp CCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 322 2222 345678888999999999998763
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.32 E-value=3e-12 Score=115.84 Aligned_cols=105 Identities=21% Similarity=0.297 Sum_probs=83.8
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHc--CC-CCCeEEEEcCCCCC-CCCCCccceEEcc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAAR--GL-ADKVSFQVGDALQQ-PFPDGQFDLVWSM 233 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~--~~-~~~v~~~~~d~~~~-~~~~~~fD~v~~~ 233 (371)
+.+|||||||+|.++..+++.. ..+|+++|+++.+++.|++++... ++ .++++++.+|+.+. +..+++||+|++.
T Consensus 76 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~d 155 (275)
T 1iy9_A 76 PEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMVD 155 (275)
T ss_dssp CCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEES
T ss_pred CCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEEC
Confidence 6899999999999999998865 479999999999999999987542 23 36899999998763 3335789999986
Q ss_pred ccccCcCC----HHHHHHHHHHhcCCCcEEEEEe
Q 017428 234 ESGEHMPD----KSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 234 ~~l~~~~~----~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
......+. ...++++++++|+|||.+++..
T Consensus 156 ~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~ 189 (275)
T 1iy9_A 156 STEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (275)
T ss_dssp CSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred CCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 44322111 2679999999999999999864
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=6e-11 Score=114.24 Aligned_cols=118 Identities=19% Similarity=0.349 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE
Q 017428 135 RAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQV 214 (371)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~ 214 (371)
......+++.+++.+...+ +.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++++.+++. ++.|+.
T Consensus 268 ~~~~e~l~~~~~~~l~~~~-----~~~VLDlgcG~G~~~~~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~~-~v~f~~ 340 (433)
T 1uwv_A 268 AGVNQKMVARALEWLDVQP-----EDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGLQ-NVTFYH 340 (433)
T ss_dssp HHHHHHHHHHHHHHHTCCT-----TCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEE
T ss_pred HHHHHHHHHHHHHhhcCCC-----CCEEEECCCCCCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEE
Confidence 3445566777777776543 789999999999999999987 789999999999999999999998885 899999
Q ss_pred cCCCCC----CCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 215 GDALQQ----PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 215 ~d~~~~----~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+|+.+. ++++++||+|++.--.... ..+++.+.+ ++|++.+++..
T Consensus 341 ~d~~~~l~~~~~~~~~fD~Vv~dPPr~g~---~~~~~~l~~-~~p~~ivyvsc 389 (433)
T 1uwv_A 341 ENLEEDVTKQPWAKNGFDKVLLDPARAGA---AGVMQQIIK-LEPIRIVYVSC 389 (433)
T ss_dssp CCTTSCCSSSGGGTTCCSEEEECCCTTCC---HHHHHHHHH-HCCSEEEEEES
T ss_pred CCHHHHhhhhhhhcCCCCEEEECCCCccH---HHHHHHHHh-cCCCeEEEEEC
Confidence 999872 3456789999985433222 245555543 78988888753
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.4e-12 Score=120.62 Aligned_cols=105 Identities=20% Similarity=0.211 Sum_probs=83.1
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHH--cCC-CCCeEEEEcCCCCC-CCCCCccceEEcc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAA--RGL-ADKVSFQVGDALQQ-PFPDGQFDLVWSM 233 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~--~~~-~~~v~~~~~d~~~~-~~~~~~fD~v~~~ 233 (371)
+.+|||||||+|.++..+++.. ..+|+++|+|+.+++.|++++.. .++ .++++++.+|+.+. +..+++||+|++.
T Consensus 117 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~d 196 (321)
T 2pt6_A 117 PKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIVD 196 (321)
T ss_dssp CCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEEE
T ss_pred CCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEEC
Confidence 6899999999999999999865 57999999999999999998754 122 36899999998663 2235789999986
Q ss_pred ccccC--cCCH--HHHHHHHHHhcCCCcEEEEEe
Q 017428 234 ESGEH--MPDK--SKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 234 ~~l~~--~~~~--~~~l~~~~~~LkpgG~l~i~~ 263 (371)
..-.. .... ..+++++.++|+|||++++..
T Consensus 197 ~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 230 (321)
T 2pt6_A 197 SSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 230 (321)
T ss_dssp CCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 42111 1111 689999999999999999965
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.30 E-value=3.8e-12 Score=121.31 Aligned_cols=106 Identities=12% Similarity=0.068 Sum_probs=88.4
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCC-CCCeEEEEcCCCCCC--C--CCCccceEEcc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGL-ADKVSFQVGDALQQP--F--PDGQFDLVWSM 233 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~~v~~~~~d~~~~~--~--~~~~fD~v~~~ 233 (371)
+.+|||+|||+|.++..++.....+|+|+|+|+.+++.|+++++.+++ .++++++.+|+.+.. + ..++||+|++.
T Consensus 221 ~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~d 300 (396)
T 3c0k_A 221 NKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMD 300 (396)
T ss_dssp TCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEEEC
Confidence 789999999999999999986335899999999999999999999988 558999999987752 1 14689999986
Q ss_pred cc---------ccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 234 ES---------GEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 234 ~~---------l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
-. .....+...++.++.+.|+|||++++...
T Consensus 301 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 340 (396)
T 3c0k_A 301 PPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSC 340 (396)
T ss_dssp CSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 32 22335667899999999999999999763
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.29 E-value=1.5e-11 Score=118.42 Aligned_cols=106 Identities=17% Similarity=0.239 Sum_probs=89.1
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCccceEEcc-
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWSM- 233 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~v~~~- 233 (371)
++.+|||+|||+|..+..+++.. +..|+++|+++.+++.++++++..++ ++.++.+|+.+.+ +++++||+|++.
T Consensus 246 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~--~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 323 (429)
T 1sqg_A 246 NGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM--KATVKQGDGRYPSQWCGEQQFDRILLDA 323 (429)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC--CCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred CcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCC--CeEEEeCchhhchhhcccCCCCEEEEeC
Confidence 48899999999999999999986 47999999999999999999998886 4789999998875 556789999962
Q ss_pred -----ccccCcCCH----------------HHHHHHHHHhcCCCcEEEEEecc
Q 017428 234 -----ESGEHMPDK----------------SKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 234 -----~~l~~~~~~----------------~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
.++.+.++. ..+++++.++|||||++++.+.+
T Consensus 324 Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs 376 (429)
T 1sqg_A 324 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCS 376 (429)
T ss_dssp CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESC
T ss_pred CCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 344444443 47899999999999999998754
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=5.3e-12 Score=128.25 Aligned_cols=105 Identities=17% Similarity=0.176 Sum_probs=87.9
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEEEcCCCCC-CCCCCccceEEcccc-
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLA-DKVSFQVGDALQQ-PFPDGQFDLVWSMES- 235 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~-~~~~~~fD~v~~~~~- 235 (371)
+.+|||+|||+|.++..++.....+|+++|+|+.+++.|+++++.+++. .+++++++|+.+. +...++||+|++.--
T Consensus 540 g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DPP~ 619 (703)
T 3v97_A 540 GKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDPPT 619 (703)
T ss_dssp TCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECCCS
T ss_pred CCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECCcc
Confidence 7899999999999999998853346999999999999999999999986 5899999998773 334578999998542
Q ss_pred ----------ccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 236 ----------GEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 236 ----------l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+....+...++..+.++|+|||+|++..
T Consensus 620 f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~ 657 (703)
T 3v97_A 620 FSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSN 657 (703)
T ss_dssp BC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 2233456788999999999999999765
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=8e-12 Score=116.37 Aligned_cols=99 Identities=19% Similarity=0.126 Sum_probs=85.8
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 238 (371)
+.+|||+|||+|.++.. ++. +.+|+++|+|+.+++.|+++++.+++.+++.++.+|+.+.. ++||+|++....
T Consensus 196 ~~~VLDlg~G~G~~~l~-a~~-~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~---~~fD~Vi~dpP~-- 268 (336)
T 2yx1_A 196 NDVVVDMFAGVGPFSIA-CKN-AKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD---VKGNRVIMNLPK-- 268 (336)
T ss_dssp TCEEEETTCTTSHHHHH-TTT-SSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC---CCEEEEEECCTT--
T ss_pred CCEEEEccCccCHHHHh-ccC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc---CCCcEEEECCcH--
Confidence 78999999999999999 873 67999999999999999999999998778999999998865 789999985321
Q ss_pred cCCHHHHHHHHHHhcCCCcEEEEEeccC
Q 017428 239 MPDKSKFVSELARVTAPAGTIIIVTWCH 266 (371)
Q Consensus 239 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 266 (371)
....++..+.++|+|||++++.++..
T Consensus 269 --~~~~~l~~~~~~L~~gG~l~~~~~~~ 294 (336)
T 2yx1_A 269 --FAHKFIDKALDIVEEGGVIHYYTIGK 294 (336)
T ss_dssp --TGGGGHHHHHHHEEEEEEEEEEEEES
T ss_pred --hHHHHHHHHHHHcCCCCEEEEEEeec
Confidence 12378899999999999999987643
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.28 E-value=6.6e-12 Score=118.99 Aligned_cols=105 Identities=23% Similarity=0.200 Sum_probs=83.9
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-CCCCccceEEccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-FPDGQFDLVWSMESG 236 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~v~~~~~l 236 (371)
++.+|||+|||+|.++..++.. ++.|+++|+|+.+++.|+++++.+++. ..+.++|+.+.. ...+.||+|++.-..
T Consensus 214 ~g~~VLDlg~GtG~~sl~~a~~-ga~V~avDis~~al~~a~~n~~~ng~~--~~~~~~D~~~~l~~~~~~fD~Ii~dpP~ 290 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRAARK-GAYALAVDKDLEALGVLDQAALRLGLR--VDIRHGEALPTLRGLEGPFHHVLLDPPT 290 (393)
T ss_dssp TTCEEEEESCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTCC--CEEEESCHHHHHHTCCCCEEEEEECCCC
T ss_pred CCCeEEEcccchhHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHhCCC--CcEEEccHHHHHHHhcCCCCEEEECCCc
Confidence 3789999999999999999986 778999999999999999999999875 356788887641 113449999986432
Q ss_pred cC---------cCCHHHHHHHHHHhcCCCcEEEEEecc
Q 017428 237 EH---------MPDKSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 237 ~~---------~~~~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
.. ..+...++..+.++|+|||+|++....
T Consensus 291 f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s 328 (393)
T 4dmg_A 291 LVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCS 328 (393)
T ss_dssp CCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 11 123468899999999999999987743
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=6.8e-12 Score=114.00 Aligned_cols=105 Identities=20% Similarity=0.208 Sum_probs=83.4
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcC--C-CCCeEEEEcCCCCC-CCCCCccceEEcc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARG--L-ADKVSFQVGDALQQ-PFPDGQFDLVWSM 233 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~~-~~~~~~fD~v~~~ 233 (371)
+.+|||||||+|.++..+++.. ..+|+++|+++.+++.|++++...+ + .++++++.+|+.+. +..+++||+|++.
T Consensus 79 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d 158 (283)
T 2i7c_A 79 PKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIVD 158 (283)
T ss_dssp CCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEEE
T ss_pred CCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEEEc
Confidence 6899999999999999998865 5799999999999999999875431 1 36899999998763 2225789999985
Q ss_pred ccccCcC--CH--HHHHHHHHHhcCCCcEEEEEe
Q 017428 234 ESGEHMP--DK--SKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 234 ~~l~~~~--~~--~~~l~~~~~~LkpgG~l~i~~ 263 (371)
......+ .. ..+++++.++|+|||.+++..
T Consensus 159 ~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 192 (283)
T 2i7c_A 159 SSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 192 (283)
T ss_dssp CCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred CCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence 4332212 11 689999999999999999874
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.27 E-value=4.4e-12 Score=120.92 Aligned_cols=108 Identities=20% Similarity=0.185 Sum_probs=88.4
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC----CCCccceEEcc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF----PDGQFDLVWSM 233 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~fD~v~~~ 233 (371)
++.+|||+|||+|.++..++.....+|+|+|+|+.+++.|+++++.+++.++++++.+|+.+... ..++||+|++.
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~d 296 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLD 296 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEEC
Confidence 37899999999999999999862248999999999999999999999886689999999876421 25789999985
Q ss_pred ccccC---------cCCHHHHHHHHHHhcCCCcEEEEEecc
Q 017428 234 ESGEH---------MPDKSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 234 ~~l~~---------~~~~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
-.... ..+...++.++.++|+|||.+++....
T Consensus 297 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 337 (396)
T 2as0_A 297 PPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS 337 (396)
T ss_dssp CCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 33222 134578899999999999999988743
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=7.7e-12 Score=109.68 Aligned_cols=101 Identities=10% Similarity=0.112 Sum_probs=88.5
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
+.+|||||||+|.++..++... .++|+++|+++.+++.+++++...|+ +..+.+.|....+ +.++||+|++.-+++
T Consensus 133 p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~--~~~~~v~D~~~~~-p~~~~DvaL~lkti~ 209 (281)
T 3lcv_B 133 PNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNV--PHRTNVADLLEDR-LDEPADVTLLLKTLP 209 (281)
T ss_dssp CSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTC--CEEEEECCTTTSC-CCSCCSEEEETTCHH
T ss_pred CceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCC--CceEEEeeecccC-CCCCcchHHHHHHHH
Confidence 6899999999999999998765 68999999999999999999999886 4889999987765 458899999999999
Q ss_pred CcCCH--HHHHHHHHHhcCCCcEEEEEe
Q 017428 238 HMPDK--SKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 238 ~~~~~--~~~l~~~~~~LkpgG~l~i~~ 263 (371)
++++. ...+ ++...|+|+|.++-.+
T Consensus 210 ~Le~q~kg~g~-~ll~aL~~~~vvVSfp 236 (281)
T 3lcv_B 210 CLETQQRGSGW-EVIDIVNSPNIVVTFP 236 (281)
T ss_dssp HHHHHSTTHHH-HHHHHSSCSEEEEEEE
T ss_pred HhhhhhhHHHH-HHHHHhCCCCEEEecc
Confidence 99664 3455 9999999999988865
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=3e-12 Score=121.48 Aligned_cols=104 Identities=18% Similarity=0.115 Sum_probs=86.7
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC----CCCccceEEccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF----PDGQFDLVWSME 234 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~fD~v~~~~ 234 (371)
+.+|||+|||+|.++..++.. ..+|+|+|+|+.+++.|+++++.+++. +++++.+|+.+... ..++||+|++.-
T Consensus 210 ~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~~~-~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dp 287 (382)
T 1wxx_A 210 GERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLG-NVRVLEANAFDLLRRLEKEGERFDLVVLDP 287 (382)
T ss_dssp EEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCT-TEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCC-CceEEECCHHHHHHHHHhcCCCeeEEEECC
Confidence 789999999999999999998 678999999999999999999999885 59999999877421 157899999853
Q ss_pred cccC---------cCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 235 SGEH---------MPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 235 ~l~~---------~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
.... ..+...++.++.++|+|||.+++...
T Consensus 288 P~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 326 (382)
T 1wxx_A 288 PAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC 326 (382)
T ss_dssp CCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 2211 13346789999999999999999874
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=2e-11 Score=106.13 Aligned_cols=101 Identities=16% Similarity=0.177 Sum_probs=85.5
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
++.+|||||||+|.++..+. ....|+|+|+++.+++.+++++...+ .+..+.+.|....+.+ ++||+|++.-+++
T Consensus 105 ~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~g--~~~~~~v~D~~~~~~~-~~~DvvLllk~lh 179 (253)
T 3frh_A 105 TPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREKD--WDFTFALQDVLCAPPA-EAGDLALIFKLLP 179 (253)
T ss_dssp CCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHTT--CEEEEEECCTTTSCCC-CBCSEEEEESCHH
T ss_pred CCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhcC--CCceEEEeecccCCCC-CCcchHHHHHHHH
Confidence 47899999999999999887 36899999999999999999998877 4689999999887755 6899999999999
Q ss_pred CcCCH-HHHHHHHHHhcCCCcEEEEEe
Q 017428 238 HMPDK-SKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 238 ~~~~~-~~~l~~~~~~LkpgG~l~i~~ 263 (371)
++++. .....++.+.|+++|.++-..
T Consensus 180 ~LE~q~~~~~~~ll~aL~~~~vvVsfP 206 (253)
T 3frh_A 180 LLEREQAGSAMALLQSLNTPRMAVSFP 206 (253)
T ss_dssp HHHHHSTTHHHHHHHHCBCSEEEEEEE
T ss_pred HhhhhchhhHHHHHHHhcCCCEEEEcC
Confidence 98654 233348888999998877765
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.8e-11 Score=110.78 Aligned_cols=88 Identities=18% Similarity=0.317 Sum_probs=69.7
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (371)
.++.++..+.+.+ +.+|||+|||+|.++..+++. +.+|+|+|+++.+++.+++++...++ ++++++.+|+.+.
T Consensus 30 i~~~i~~~~~~~~-----~~~VLDiG~G~G~lt~~La~~-~~~v~~vDi~~~~~~~a~~~~~~~~~-~~v~~~~~D~~~~ 102 (299)
T 2h1r_A 30 ILDKIIYAAKIKS-----SDIVLEIGCGTGNLTVKLLPL-AKKVITIDIDSRMISEVKKRCLYEGY-NNLEVYEGDAIKT 102 (299)
T ss_dssp HHHHHHHHHCCCT-----TCEEEEECCTTSTTHHHHTTT-SSEEEEECSCHHHHHHHHHHHHHTTC-CCEEC----CCSS
T ss_pred HHHHHHHhcCCCC-----cCEEEEEcCcCcHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCC-CceEEEECchhhC
Confidence 4556666666554 789999999999999999987 78999999999999999999887776 5899999999887
Q ss_pred CCCCCccceEEcccccc
Q 017428 221 PFPDGQFDLVWSMESGE 237 (371)
Q Consensus 221 ~~~~~~fD~v~~~~~l~ 237 (371)
++ .+||+|+++...+
T Consensus 103 ~~--~~~D~Vv~n~py~ 117 (299)
T 2h1r_A 103 VF--PKFDVCTANIPYK 117 (299)
T ss_dssp CC--CCCSEEEEECCGG
T ss_pred Cc--ccCCEEEEcCCcc
Confidence 64 4799999865443
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=3.9e-12 Score=115.49 Aligned_cols=103 Identities=18% Similarity=0.267 Sum_probs=81.1
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc--CC--------CCCeEEEEcCCCCC-CCCCCcc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR--GL--------ADKVSFQVGDALQQ-PFPDGQF 227 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~--~~--------~~~v~~~~~d~~~~-~~~~~~f 227 (371)
+.+|||||||+|.++..+++.-..+|+++|+++.+++.|++++ .. ++ .++++++.+|+.+. +. +++|
T Consensus 76 ~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~f 153 (281)
T 1mjf_A 76 PKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRGF 153 (281)
T ss_dssp CCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCCE
T ss_pred CCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc-cCCe
Confidence 6899999999999999998862359999999999999999987 33 22 46899999997653 22 5789
Q ss_pred ceEEccccccCcC--C--HHHHHHHHHHhcCCCcEEEEEe
Q 017428 228 DLVWSMESGEHMP--D--KSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 228 D~v~~~~~l~~~~--~--~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
|+|++....+.-+ . ...++++++++|+|||++++..
T Consensus 154 D~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 193 (281)
T 1mjf_A 154 DVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 193 (281)
T ss_dssp EEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 9999865432111 1 2678999999999999999864
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=2.8e-11 Score=109.61 Aligned_cols=113 Identities=19% Similarity=0.157 Sum_probs=83.2
Q ss_pred CCCEEEEECCCc------ChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEE-EEcCCCCCCCCCCccc
Q 017428 158 RPKNVVDVGCGI------GGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSF-QVGDALQQPFPDGQFD 228 (371)
Q Consensus 158 ~~~~VLDlG~Gt------G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~-~~~d~~~~~~~~~~fD 228 (371)
++.+|||+|||+ |. ..+++.. +.+|+|+|+|+. + +++++ +++|+.+++++ ++||
T Consensus 63 ~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-------------v-~~v~~~i~gD~~~~~~~-~~fD 125 (290)
T 2xyq_A 63 YNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-------------V-SDADSTLIGDCATVHTA-NKWD 125 (290)
T ss_dssp TTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-------------B-CSSSEEEESCGGGCCCS-SCEE
T ss_pred CCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-------------C-CCCEEEEECccccCCcc-Cccc
Confidence 488999999944 66 4455555 379999999997 1 36889 99999887654 7899
Q ss_pred eEEccccccC-----------cCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCC
Q 017428 229 LVWSMESGEH-----------MPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWC 297 (371)
Q Consensus 229 ~v~~~~~l~~-----------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (371)
+|+++...+. ......+++++.++|||||++++..+...
T Consensus 126 ~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~------------------------------ 175 (290)
T 2xyq_A 126 LIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHS------------------------------ 175 (290)
T ss_dssp EEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSS------------------------------
T ss_pred EEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccC------------------------------
Confidence 9998643221 11245899999999999999999764211
Q ss_pred CHHHHHHHHHhCCCceEEEE
Q 017428 298 STADYVKLLQSLSLEDIKAE 317 (371)
Q Consensus 298 ~~~~~~~ll~~aGF~~v~~~ 317 (371)
..+++.+++++.||..+.+.
T Consensus 176 ~~~~l~~~l~~~GF~~v~~~ 195 (290)
T 2xyq_A 176 WNADLYKLMGHFSWWTAFVT 195 (290)
T ss_dssp CCHHHHHHHTTEEEEEEEEE
T ss_pred CHHHHHHHHHHcCCcEEEEE
Confidence 22467788888888876654
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.22 E-value=7.5e-12 Score=112.27 Aligned_cols=96 Identities=13% Similarity=0.004 Sum_probs=80.2
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc--CC-CCCeEEEEcCCCCCCCCCCccceEEcccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR--GL-ADKVSFQVGDALQQPFPDGQFDLVWSMES 235 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~--~~-~~~v~~~~~d~~~~~~~~~~fD~v~~~~~ 235 (371)
+.+|||||||+|..+..+++. +.+|+++|+++.+++.|++++... ++ .++++++.+|+.+.. ++||+|++.
T Consensus 73 ~~~VL~iG~G~G~~~~~ll~~-~~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~d-- 146 (262)
T 2cmg_A 73 LKEVLIVDGFDLELAHQLFKY-DTHIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFCL-- 146 (262)
T ss_dssp CCEEEEESSCCHHHHHHHTTS-SCEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEES--
T ss_pred CCEEEEEeCCcCHHHHHHHhC-CCEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEEC--
Confidence 689999999999999999887 689999999999999998765321 11 258999999987754 789999986
Q ss_pred ccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 236 GEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 236 l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
..++..+++++.++|+|||.+++..
T Consensus 147 ---~~dp~~~~~~~~~~L~pgG~lv~~~ 171 (262)
T 2cmg_A 147 ---QEPDIHRIDGLKRMLKEDGVFISVA 171 (262)
T ss_dssp ---SCCCHHHHHHHHTTEEEEEEEEEEE
T ss_pred ---CCChHHHHHHHHHhcCCCcEEEEEc
Confidence 2455669999999999999999864
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=99.21 E-value=6.2e-12 Score=111.77 Aligned_cols=83 Identities=17% Similarity=0.276 Sum_probs=66.5
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (371)
.++.++..+.+.+ +.+|||||||+|.++..+++. +.+|+|+|+|+.+++.+++++... ++++++.+|+.+.
T Consensus 18 ~~~~i~~~~~~~~-----~~~VLDiG~G~G~lt~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~---~~v~~~~~D~~~~ 88 (244)
T 1qam_A 18 NIDKIMTNIRLNE-----HDNIFEIGSGKGHFTLELVQR-CNFVTAIEIDHKLCKTTENKLVDH---DNFQVLNKDILQF 88 (244)
T ss_dssp HHHHHHTTCCCCT-----TCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHTTTC---CSEEEECCCGGGC
T ss_pred HHHHHHHhCCCCC-----CCEEEEEeCCchHHHHHHHHc-CCeEEEEECCHHHHHHHHHhhccC---CCeEEEEChHHhC
Confidence 5566666666543 789999999999999999998 589999999999999999887532 5899999999998
Q ss_pred CCCC-CccceEEcc
Q 017428 221 PFPD-GQFDLVWSM 233 (371)
Q Consensus 221 ~~~~-~~fD~v~~~ 233 (371)
++++ ..| .|+++
T Consensus 89 ~~~~~~~~-~vv~n 101 (244)
T 1qam_A 89 KFPKNQSY-KIFGN 101 (244)
T ss_dssp CCCSSCCC-EEEEE
T ss_pred CcccCCCe-EEEEe
Confidence 7764 345 34443
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.20 E-value=8.2e-10 Score=103.33 Aligned_cols=187 Identities=18% Similarity=0.250 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHH--------c--------CCEEEEEeCCHHHHHHHHHH
Q 017428 137 AQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKK--------F--------GAKCQGITLSPVQAQRANAL 200 (371)
Q Consensus 137 ~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~--------~--------~~~v~gvD~s~~~~~~a~~~ 200 (371)
....++++.+..+...........+|+|+|||+|..+..+... + ..+|...|+........=+.
T Consensus 31 ~~~~~~~~ai~~l~~~~~~~~~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~ 110 (374)
T 3b5i_A 31 SMLHLLEETLENVHLNSSASPPPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQL 110 (374)
T ss_dssp HHHHHHHHHHHTSCCCCSSSCCCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccCCCCceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhh
Confidence 3455666667766554311224689999999999998877332 1 24677777766554332222
Q ss_pred HHHc-----------CCCCCeEEEE---cCCCCCCCCCCccceEEccccccCcC--------------------------
Q 017428 201 AAAR-----------GLADKVSFQV---GDALQQPFPDGQFDLVWSMESGEHMP-------------------------- 240 (371)
Q Consensus 201 ~~~~-----------~~~~~v~~~~---~d~~~~~~~~~~fD~v~~~~~l~~~~-------------------------- 240 (371)
+... +...+-.|.. +.+..-.+|+++||+|+++.+||++.
T Consensus 111 L~~~~~~~~~~~~~~~~~~~~~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~ 190 (374)
T 3b5i_A 111 LPPLVSNTCMEECLAADGNRSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGE 190 (374)
T ss_dssp SCCBCCCC--CCC---CCCBCSEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCH
T ss_pred hhhhhhhcchhhhccccCCCceEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCH
Confidence 1110 0000111222 22223357899999999999999986
Q ss_pred ------------CHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccc----cC-hHHHHHHHHH----------hhccCC
Q 017428 241 ------------DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEES----LQ-PWEQELLKKI----------CDAYYL 293 (371)
Q Consensus 241 ------------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~----~~-~~~~~~~~~~----------~~~~~~ 293 (371)
|...+|+..++.|+|||++++...+.....+.... +. ......+... ...+..
T Consensus 191 ~v~~ay~~Qf~~D~~~fL~~ra~eL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~ 270 (374)
T 3b5i_A 191 KTTTAYKRQFQADLAEFLRARAAEVKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNI 270 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCCccccccchhhHHHHHHHHHHHHHHHhCCcchhhcccCCc
Confidence 44457888999999999999988765543211100 00 1111112211 111233
Q ss_pred C-CCCCHHHHHHHHH-hCCCceEEEEecCCcc
Q 017428 294 P-AWCSTADYVKLLQ-SLSLEDIKAEDWSQNV 323 (371)
Q Consensus 294 ~-~~~~~~~~~~ll~-~aGF~~v~~~~~~~~~ 323 (371)
| .+.+.++++.+++ +.||++..++.+..+.
T Consensus 271 P~y~ps~~E~~~~l~~~~~F~I~~le~~~~~~ 302 (374)
T 3b5i_A 271 PVYAPSLQDFKEVVDANGSFAIDKLVVYKGGS 302 (374)
T ss_dssp CBCCCCHHHHHHHHHHHCSEEEEEEEEEECCC
T ss_pred cccCCCHHHHHHHHHhcCCcEEEEEEEEeecC
Confidence 3 2468999999998 5999998887765443
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=6.1e-12 Score=115.33 Aligned_cols=100 Identities=18% Similarity=0.254 Sum_probs=72.7
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeC----CHHHHHHHHHHHHHcCCCCCeEEEEc-CCCCCCCCCCccceEEc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITL----SPVQAQRANALAAARGLADKVSFQVG-DALQQPFPDGQFDLVWS 232 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~----s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~fD~v~~ 232 (371)
++.+|||||||+|.++..+++. .+|+|+|+ ++.+++.+. .+..+ .+++.++++ |+..++ .++||+|++
T Consensus 82 ~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~~~~~--~~~~~-~~~v~~~~~~D~~~l~--~~~fD~V~s 154 (305)
T 2p41_A 82 PEGKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHEEPIP--MSTYG-WNLVRLQSGVDVFFIP--PERCDTLLC 154 (305)
T ss_dssp CCEEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCCCC--CCSTT-GGGEEEECSCCTTTSC--CCCCSEEEE
T ss_pred CCCEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHHHHHH--hhhcC-CCCeEEEeccccccCC--cCCCCEEEE
Confidence 4789999999999999999987 58999999 554432111 01111 146999998 887764 578999999
Q ss_pred ccccc---CcCCHH---HHHHHHHHhcCCCcEEEEEec
Q 017428 233 MESGE---HMPDKS---KFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 233 ~~~l~---~~~~~~---~~l~~~~~~LkpgG~l~i~~~ 264 (371)
..++. +..+.. .++..+.++|||||.+++..+
T Consensus 155 d~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~ 192 (305)
T 2p41_A 155 DIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVL 192 (305)
T ss_dssp CCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred CCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 76653 112222 578899999999999988654
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1.3e-10 Score=105.56 Aligned_cols=87 Identities=22% Similarity=0.258 Sum_probs=75.3
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (371)
+++.++..+.+.+ +.+|||||||+|.++..+++. +.+|+++|+++.+++.+++++... ++++++.+|+.+.
T Consensus 38 i~~~Iv~~l~~~~-----~~~VLEIG~G~G~lT~~La~~-~~~V~aVEid~~li~~a~~~~~~~---~~v~vi~gD~l~~ 108 (295)
T 3gru_A 38 FVNKAVESANLTK-----DDVVLEIGLGKGILTEELAKN-AKKVYVIEIDKSLEPYANKLKELY---NNIEIIWGDALKV 108 (295)
T ss_dssp HHHHHHHHTTCCT-----TCEEEEECCTTSHHHHHHHHH-SSEEEEEESCGGGHHHHHHHHHHC---SSEEEEESCTTTS
T ss_pred HHHHHHHhcCCCC-----cCEEEEECCCchHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhccC---CCeEEEECchhhC
Confidence 5677777777664 889999999999999999998 789999999999999999998732 5899999999998
Q ss_pred CCCCCccceEEccccc
Q 017428 221 PFPDGQFDLVWSMESG 236 (371)
Q Consensus 221 ~~~~~~fD~v~~~~~l 236 (371)
++++.+||+|+++...
T Consensus 109 ~~~~~~fD~Iv~NlPy 124 (295)
T 3gru_A 109 DLNKLDFNKVVANLPY 124 (295)
T ss_dssp CGGGSCCSEEEEECCG
T ss_pred CcccCCccEEEEeCcc
Confidence 8877789999977443
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=4.5e-10 Score=107.56 Aligned_cols=97 Identities=19% Similarity=0.295 Sum_probs=79.1
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 238 (371)
+.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++++.+++. ++|+.+|+.+.. + .+||+|++.-....
T Consensus 291 ~~~VLDlgcG~G~~sl~la~~-~~~V~gvD~s~~ai~~A~~n~~~ngl~--v~~~~~d~~~~~-~-~~fD~Vv~dPPr~g 365 (425)
T 2jjq_A 291 GEKILDMYSGVGTFGIYLAKR-GFNVKGFDSNEFAIEMARRNVEINNVD--AEFEVASDREVS-V-KGFDTVIVDPPRAG 365 (425)
T ss_dssp SSEEEEETCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTCC--EEEEECCTTTCC-C-TTCSEEEECCCTTC
T ss_pred CCEEEEeeccchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChHHcC-c-cCCCEEEEcCCccc
Confidence 789999999999999999986 679999999999999999999988874 999999998864 2 38999998643222
Q ss_pred cCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 239 MPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 239 ~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
. ...+++.+. .|+|||.+++..
T Consensus 366 ~--~~~~~~~l~-~l~p~givyvsc 387 (425)
T 2jjq_A 366 L--HPRLVKRLN-REKPGVIVYVSC 387 (425)
T ss_dssp S--CHHHHHHHH-HHCCSEEEEEES
T ss_pred h--HHHHHHHHH-hcCCCcEEEEEC
Confidence 1 134555554 599999998863
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.15 E-value=3.5e-10 Score=107.17 Aligned_cols=119 Identities=14% Similarity=0.112 Sum_probs=93.0
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-C-------------------------------------
Q 017428 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-G------------------------------------- 181 (371)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~-~------------------------------------- 181 (371)
.+...++......+ +..|||++||+|.+++.++... +
T Consensus 188 ~lAa~ll~l~~~~~-----~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~ 262 (393)
T 3k0b_A 188 TMAAALVLLTSWHP-----DRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQ 262 (393)
T ss_dssp HHHHHHHHHSCCCT-----TSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTC
T ss_pred HHHHHHHHHhCCCC-----CCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccC
Confidence 35566677766654 7899999999999999888754 2
Q ss_pred -CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccC-c---CCHHHHHHHHHHhcCC-
Q 017428 182 -AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH-M---PDKSKFVSELARVTAP- 255 (371)
Q Consensus 182 -~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~-~---~~~~~~l~~~~~~Lkp- 255 (371)
.+|+|+|+++.+++.|++++...|+.+++++.++|+.+.+.+ ++||+|+++--+.. + .+...+++.+.+.||+
T Consensus 263 ~~~V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~ 341 (393)
T 3k0b_A 263 PLNIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRM 341 (393)
T ss_dssp CCCEEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcC
Confidence 459999999999999999999999987899999999998754 58999999844321 2 2334566666667765
Q ss_pred -CcEEEEEec
Q 017428 256 -AGTIIIVTW 264 (371)
Q Consensus 256 -gG~l~i~~~ 264 (371)
||.+++...
T Consensus 342 ~g~~~~iit~ 351 (393)
T 3k0b_A 342 PTWSVYVLTS 351 (393)
T ss_dssp TTCEEEEEEC
T ss_pred CCCEEEEEEC
Confidence 898888763
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.15 E-value=4.3e-10 Score=106.12 Aligned_cols=119 Identities=18% Similarity=0.096 Sum_probs=94.5
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-C-------------------------------------
Q 017428 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-G------------------------------------- 181 (371)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~-~------------------------------------- 181 (371)
.+...++......+ +..|||.+||+|.+++..+... +
T Consensus 181 ~LAaall~l~~~~~-----~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~ 255 (384)
T 3ldg_A 181 NMAAAIILLSNWFP-----DKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDI 255 (384)
T ss_dssp HHHHHHHHHTTCCT-----TSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTC
T ss_pred HHHHHHHHHhCCCC-----CCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccC
Confidence 35556666666654 7899999999999999888653 2
Q ss_pred -CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc-Cc---CCHHHHHHHHHHhcCC-
Q 017428 182 -AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE-HM---PDKSKFVSELARVTAP- 255 (371)
Q Consensus 182 -~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~-~~---~~~~~~l~~~~~~Lkp- 255 (371)
.+|+|+|+++.+++.|++++...|+.+++++.++|+.+.+.+ ++||+|+++--+. -+ .+...+++++.+.||+
T Consensus 256 ~~~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~ 334 (384)
T 3ldg_A 256 QLDISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETFAPL 334 (384)
T ss_dssp CCCEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhC
Confidence 359999999999999999999999988899999999998754 5899999974432 12 2346677777778876
Q ss_pred -CcEEEEEec
Q 017428 256 -AGTIIIVTW 264 (371)
Q Consensus 256 -gG~l~i~~~ 264 (371)
||.+++...
T Consensus 335 ~g~~~~iit~ 344 (384)
T 3ldg_A 335 KTWSQFILTN 344 (384)
T ss_dssp TTSEEEEEES
T ss_pred CCcEEEEEEC
Confidence 999888763
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.14 E-value=2.3e-13 Score=121.17 Aligned_cols=113 Identities=17% Similarity=0.228 Sum_probs=84.9
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (371)
.++.+++.+.+.+ +.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+++++. ..++++++++|+.+.
T Consensus 17 ~~~~i~~~~~~~~-----~~~VLDiG~G~G~~~~~l~~~-~~~v~~id~~~~~~~~a~~~~~---~~~~v~~~~~D~~~~ 87 (245)
T 1yub_A 17 VLNQIIKQLNLKE-----TDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFNLSSEKLK---LNTRVTLIHQDILQF 87 (245)
T ss_dssp THHHHHHHCCCCS-----SEEEEECSCCCSSCSHHHHHH-SSEEEESSSSCSSSSSSSCTTT---TCSEEEECCSCCTTT
T ss_pred HHHHHHHhcCCCC-----CCEEEEEeCCCCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHhc---cCCceEEEECChhhc
Confidence 4566677776654 789999999999999999998 6899999999999998887654 125799999999998
Q ss_pred CCCC-CccceEEcccccc-----------CcCCHHHHH----HHHHHhcCCCcEEEEEe
Q 017428 221 PFPD-GQFDLVWSMESGE-----------HMPDKSKFV----SELARVTAPAGTIIIVT 263 (371)
Q Consensus 221 ~~~~-~~fD~v~~~~~l~-----------~~~~~~~~l----~~~~~~LkpgG~l~i~~ 263 (371)
+++. ++| .|+++...+ |..+...++ +.+.++|+|||.+.+..
T Consensus 88 ~~~~~~~f-~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~ 145 (245)
T 1yub_A 88 QFPNKQRY-KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL 145 (245)
T ss_dssp TCCCSSEE-EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred CcccCCCc-EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence 7763 678 566543221 122222334 66899999999887754
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.13 E-value=3.5e-10 Score=106.99 Aligned_cols=118 Identities=18% Similarity=0.166 Sum_probs=93.3
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-C--------------------------------------
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-G-------------------------------------- 181 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~-~-------------------------------------- 181 (371)
+...++......+ +.+|||++||+|.+++.++... +
T Consensus 183 lAa~ll~~~~~~~-----~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~ 257 (385)
T 3ldu_A 183 LAAGLIYLTPWKA-----GRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESK 257 (385)
T ss_dssp HHHHHHHTSCCCT-----TSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCC
T ss_pred HHHHHHHhhCCCC-----CCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCC
Confidence 5555666666554 7899999999999999988763 1
Q ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccC-c---CCHHHHHHHHHHhcCC--
Q 017428 182 AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH-M---PDKSKFVSELARVTAP-- 255 (371)
Q Consensus 182 ~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~-~---~~~~~~l~~~~~~Lkp-- 255 (371)
.+|+|+|+++.+++.|++++...++.++++|.+.|+.+.+.+ ++||+|+++--+.. + .+...+++++.+.||+
T Consensus 258 ~~V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~ 336 (385)
T 3ldu_A 258 FKIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLK 336 (385)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSB
T ss_pred ceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCC
Confidence 479999999999999999999999877899999999988654 68999999765432 2 2345677777777776
Q ss_pred CcEEEEEec
Q 017428 256 AGTIIIVTW 264 (371)
Q Consensus 256 gG~l~i~~~ 264 (371)
||.+++...
T Consensus 337 g~~~~iit~ 345 (385)
T 3ldu_A 337 NWSYYLITS 345 (385)
T ss_dssp SCEEEEEES
T ss_pred CCEEEEEEC
Confidence 888888763
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.09 E-value=4.2e-10 Score=108.80 Aligned_cols=106 Identities=16% Similarity=0.226 Sum_probs=86.3
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--------------CCEEEEEeCCHHHHHHHHHHHHHcCCCC-CeEEEEcCCCCCCC
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF--------------GAKCQGITLSPVQAQRANALAAARGLAD-KVSFQVGDALQQPF 222 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~--------------~~~v~gvD~s~~~~~~a~~~~~~~~~~~-~v~~~~~d~~~~~~ 222 (371)
++.+|||+|||+|.++..+++.. ...++|+|+++.+++.|+.++...++.. ++.+.++|....+.
T Consensus 171 ~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~~ 250 (445)
T 2okc_A 171 MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKEP 250 (445)
T ss_dssp TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSCC
T ss_pred CCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCcc
Confidence 37899999999999999888753 3579999999999999999988888743 67889999887654
Q ss_pred CCCccceEEccccccCcCC-----------------HHHHHHHHHHhcCCCcEEEEEec
Q 017428 223 PDGQFDLVWSMESGEHMPD-----------------KSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 223 ~~~~fD~v~~~~~l~~~~~-----------------~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
. ++||+|+++-.+.+... ...+++++.+.|||||++.++..
T Consensus 251 ~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p 308 (445)
T 2okc_A 251 S-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 308 (445)
T ss_dssp S-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred c-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence 3 58999999866554321 13789999999999999998873
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.08 E-value=3.2e-10 Score=106.89 Aligned_cols=114 Identities=18% Similarity=0.187 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcC
Q 017428 137 AQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216 (371)
Q Consensus 137 ~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d 216 (371)
....++..+++.+... +.+|||+|||+|.++..+++. ..+|+|+|+|+.+++.|+++++.+++ ++++|+.+|
T Consensus 198 ~~~~l~~~~~~~~~~~------~~~vLDl~cG~G~~~l~la~~-~~~V~gvd~~~~ai~~a~~n~~~ng~-~~v~~~~~d 269 (369)
T 3bt7_A 198 MNIQMLEWALDVTKGS------KGDLLELYCGNGNFSLALARN-FDRVLATEIAKPSVAAAQYNIAANHI-DNVQIIRMA 269 (369)
T ss_dssp HHHHHHHHHHHHTTTC------CSEEEEESCTTSHHHHHHGGG-SSEEEEECCCHHHHHHHHHHHHHTTC-CSEEEECCC
T ss_pred HHHHHHHHHHHHhhcC------CCEEEEccCCCCHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCC-CceEEEECC
Confidence 3455666667666532 568999999999999999885 57999999999999999999999988 589999999
Q ss_pred CCCCC--CCC--------------CccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 217 ALQQP--FPD--------------GQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 217 ~~~~~--~~~--------------~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
+.+.. +.. .+||+|++.--- ..+..++.+.|+++|.++++..
T Consensus 270 ~~~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr------~g~~~~~~~~l~~~g~ivyvsc 327 (369)
T 3bt7_A 270 AEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPR------SGLDSETEKMVQAYPRILYISC 327 (369)
T ss_dssp SHHHHHHHSSCCCCTTGGGSCGGGCCEEEEEECCCT------TCCCHHHHHHHTTSSEEEEEES
T ss_pred HHHHHHHHhhccccccccccccccCCCCEEEECcCc------cccHHHHHHHHhCCCEEEEEEC
Confidence 87641 121 379999864221 1234567777889999888764
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.05 E-value=6.4e-10 Score=99.11 Aligned_cols=83 Identities=16% Similarity=0.209 Sum_probs=68.9
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (371)
.++.+++.+.+.+ +.+|||||||+|.++..+++. +.+|+++|+++.+++.+++++.. .++++++++|+.+.
T Consensus 17 i~~~iv~~~~~~~-----~~~VLEIG~G~G~lt~~La~~-~~~V~avEid~~~~~~~~~~~~~---~~~v~~i~~D~~~~ 87 (255)
T 3tqs_A 17 VLQKIVSAIHPQK-----TDTLVEIGPGRGALTDYLLTE-CDNLALVEIDRDLVAFLQKKYNQ---QKNITIYQNDALQF 87 (255)
T ss_dssp HHHHHHHHHCCCT-----TCEEEEECCTTTTTHHHHTTT-SSEEEEEECCHHHHHHHHHHHTT---CTTEEEEESCTTTC
T ss_pred HHHHHHHhcCCCC-----cCEEEEEcccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHhh---CCCcEEEEcchHhC
Confidence 5666777777664 889999999999999999987 68999999999999999998864 25899999999998
Q ss_pred CCC----CCccceEEcc
Q 017428 221 PFP----DGQFDLVWSM 233 (371)
Q Consensus 221 ~~~----~~~fD~v~~~ 233 (371)
+++ +++|| |+++
T Consensus 88 ~~~~~~~~~~~~-vv~N 103 (255)
T 3tqs_A 88 DFSSVKTDKPLR-VVGN 103 (255)
T ss_dssp CGGGSCCSSCEE-EEEE
T ss_pred CHHHhccCCCeE-EEec
Confidence 754 25688 5554
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.03 E-value=3.2e-09 Score=97.32 Aligned_cols=106 Identities=13% Similarity=0.103 Sum_probs=81.3
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCC---CccceEEc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPD---GQFDLVWS 232 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~---~~fD~v~~ 232 (371)
++.+|||+|||+|..+..+++.. ...|+++|+++.+++.++++++..|+ .++.++.+|+.+.+... ++||+|++
T Consensus 102 ~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~-~~v~~~~~D~~~~~~~~~~~~~fD~Vl~ 180 (309)
T 2b9e_A 102 PGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV-SCCELAEEDFLAVSPSDPRYHEVHYILL 180 (309)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCGGGSCTTCGGGTTEEEEEE
T ss_pred CCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEeCChHhcCccccccCCCCEEEE
Confidence 48899999999999999999876 37999999999999999999999988 57999999988764321 57999996
Q ss_pred c------ccccCcC-----------CH-------HHHHHHHHHhcCCCcEEEEEecc
Q 017428 233 M------ESGEHMP-----------DK-------SKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 233 ~------~~l~~~~-----------~~-------~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
. .++..-+ +. ..++..+.++|+ ||+|+..+.+
T Consensus 181 D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs 236 (309)
T 2b9e_A 181 DPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCS 236 (309)
T ss_dssp CCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESC
T ss_pred cCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCC
Confidence 2 1221111 11 246778888887 9988877643
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=6.5e-10 Score=106.63 Aligned_cols=108 Identities=18% Similarity=0.267 Sum_probs=82.1
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (371)
+.+.+++.+... ++.+|||+|||+|.++..+++++ +.+++|+|+++.+++.| .++.++++|+.
T Consensus 27 l~~~~~~~~~~~-----~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a----------~~~~~~~~D~~ 91 (421)
T 2ih2_A 27 VVDFMVSLAEAP-----RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----------PWAEGILADFL 91 (421)
T ss_dssp HHHHHHHHCCCC-----TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----------TTEEEEESCGG
T ss_pred HHHHHHHhhccC-----CCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC----------CCCcEEeCChh
Confidence 444555555432 36799999999999999999875 47999999999998765 47899999998
Q ss_pred CCCCCCCccceEEccccccC----------cCC-------------------HHHHHHHHHHhcCCCcEEEEEec
Q 017428 219 QQPFPDGQFDLVWSMESGEH----------MPD-------------------KSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 219 ~~~~~~~~fD~v~~~~~l~~----------~~~-------------------~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
+.. +.++||+|+++--... +.+ ...+++.+.++|+|||.++++..
T Consensus 92 ~~~-~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p 165 (421)
T 2ih2_A 92 LWE-PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP 165 (421)
T ss_dssp GCC-CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hcC-ccCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 764 3578999999632211 111 12568999999999999999874
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=6e-10 Score=105.08 Aligned_cols=101 Identities=13% Similarity=0.005 Sum_probs=84.1
Q ss_pred CCEEEEECCCcChHHHHHHHHc-C-CEEEEEeCCHHHHHHHHHHHHHcCCCCC-eEEEEcCCCCCC--CCCCccceEEcc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-G-AKCQGITLSPVQAQRANALAAARGLADK-VSFQVGDALQQP--FPDGQFDLVWSM 233 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~~--~~~~~fD~v~~~ 233 (371)
+.+|||++||+|.+++.++.+. + .+|+++|+++..++.++++++.+++.++ ++++.+|+.+.. ...+.||+|++.
T Consensus 53 g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~lD 132 (392)
T 3axs_A 53 PVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDLD 132 (392)
T ss_dssp CEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEEC
T ss_pred CCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEEC
Confidence 7899999999999999999875 4 5899999999999999999999998665 999999986531 124679999976
Q ss_pred ccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 234 ESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 234 ~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
- ......++..+.+.|+|||+|++..
T Consensus 133 P----~g~~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 133 P----FGTPVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp C----SSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred C----CcCHHHHHHHHHHHhCCCCEEEEEe
Confidence 4 1233568999999999999888765
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.1e-09 Score=98.43 Aligned_cols=85 Identities=21% Similarity=0.174 Sum_probs=70.7
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (371)
.++.+++.+.+.+ + +|||||||+|.++..+++. +.+|+++|+++.+++.+++++.. .+++++++|+.+.
T Consensus 35 i~~~Iv~~~~~~~-----~-~VLEIG~G~G~lt~~L~~~-~~~V~avEid~~~~~~l~~~~~~----~~v~vi~~D~l~~ 103 (271)
T 3fut_A 35 HLRRIVEAARPFT-----G-PVFEVGPGLGALTRALLEA-GAEVTAIEKDLRLRPVLEETLSG----LPVRLVFQDALLY 103 (271)
T ss_dssp HHHHHHHHHCCCC-----S-CEEEECCTTSHHHHHHHHT-TCCEEEEESCGGGHHHHHHHTTT----SSEEEEESCGGGS
T ss_pred HHHHHHHhcCCCC-----C-eEEEEeCchHHHHHHHHHc-CCEEEEEECCHHHHHHHHHhcCC----CCEEEEECChhhC
Confidence 5677777777665 7 9999999999999999997 68999999999999999988742 5899999999988
Q ss_pred CCCCC-ccceEEccccc
Q 017428 221 PFPDG-QFDLVWSMESG 236 (371)
Q Consensus 221 ~~~~~-~fD~v~~~~~l 236 (371)
++++. .+|.|+++.-.
T Consensus 104 ~~~~~~~~~~iv~NlPy 120 (271)
T 3fut_A 104 PWEEVPQGSLLVANLPY 120 (271)
T ss_dssp CGGGSCTTEEEEEEECS
T ss_pred ChhhccCccEEEecCcc
Confidence 76542 68888776543
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=2e-09 Score=101.43 Aligned_cols=100 Identities=14% Similarity=0.039 Sum_probs=82.5
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHc---------------CCCCCeEEEEcCCCCCC-
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAAR---------------GLADKVSFQVGDALQQP- 221 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~---------------~~~~~v~~~~~d~~~~~- 221 (371)
+.+|||+|||+|..++.++... +.+|+++|+++.+++.++++++.+ ++. +++++.+|+.+..
T Consensus 48 ~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~-~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 48 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEK-TIVINHDDANRLMA 126 (378)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSS-EEEEEESCHHHHHH
T ss_pred CCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCC-ceEEEcCcHHHHHH
Confidence 7899999999999999999986 468999999999999999999988 764 4999999987642
Q ss_pred CCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 222 FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 222 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
...+.||+|++. .. .....++..+.+.|||||.|++..
T Consensus 127 ~~~~~fD~I~lD-P~---~~~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 127 ERHRYFHFIDLD-PF---GSPMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp HSTTCEEEEEEC-CS---SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred hccCCCCEEEeC-CC---CCHHHHHHHHHHhcCCCCEEEEEe
Confidence 113579999954 22 233678999999999999888764
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=1.2e-09 Score=99.56 Aligned_cols=88 Identities=20% Similarity=0.240 Sum_probs=72.3
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (371)
+++.++..+.+.+ +.+|||+|||+|..+..+++.+ +.+|+|+|+|+.+++.|+++++..+ .++.++++|+.+
T Consensus 14 Ll~e~l~~L~~~~-----g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g--~~v~~v~~d~~~ 86 (301)
T 1m6y_A 14 MVREVIEFLKPED-----EKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYRE 86 (301)
T ss_dssp THHHHHHHHCCCT-----TCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGG
T ss_pred HHHHHHHhcCCCC-----CCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCHHH
Confidence 4455666666554 8899999999999999999987 6899999999999999999988776 589999999987
Q ss_pred CC--CC---CCccceEEcccc
Q 017428 220 QP--FP---DGQFDLVWSMES 235 (371)
Q Consensus 220 ~~--~~---~~~fD~v~~~~~ 235 (371)
++ +. .++||.|++...
T Consensus 87 l~~~l~~~g~~~~D~Vl~D~g 107 (301)
T 1m6y_A 87 ADFLLKTLGIEKVDGILMDLG 107 (301)
T ss_dssp HHHHHHHTTCSCEEEEEEECS
T ss_pred HHHHHHhcCCCCCCEEEEcCc
Confidence 64 11 157999987543
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.92 E-value=4.1e-08 Score=83.70 Aligned_cols=98 Identities=17% Similarity=0.089 Sum_probs=78.6
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCC--CCCeEEEEcCCCCC---------------C
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGL--ADKVSFQVGDALQQ---------------P 221 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~---------------~ 221 (371)
..+|||+|| |..++.+++..+.+|+.+|.+++..+.|+++++..|+ ..+++++.+|+.+. +
T Consensus 31 a~~VLEiGt--GySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l~ 108 (202)
T 3cvo_A 31 AEVILEYGS--GGSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSYP 108 (202)
T ss_dssp CSEEEEESC--SHHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGTT
T ss_pred CCEEEEECc--hHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhHH
Confidence 689999998 5788888873368999999999999999999999998 78999999997542 1
Q ss_pred --------C-CCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 222 --------F-PDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 222 --------~-~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
. ..++||+|++-.- .....+..+.+.|+|||.|++-+
T Consensus 109 ~~~~~i~~~~~~~~fDlIfIDg~-----k~~~~~~~~l~~l~~GG~Iv~DN 154 (202)
T 3cvo_A 109 DYPLAVWRTEGFRHPDVVLVDGR-----FRVGCALATAFSITRPVTLLFDD 154 (202)
T ss_dssp HHHHGGGGCTTCCCCSEEEECSS-----SHHHHHHHHHHHCSSCEEEEETT
T ss_pred HHhhhhhccccCCCCCEEEEeCC-----CchhHHHHHHHhcCCCeEEEEeC
Confidence 1 1378999998752 23466777889999999996633
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=2.5e-08 Score=93.38 Aligned_cols=160 Identities=16% Similarity=0.174 Sum_probs=101.6
Q ss_pred CCEEEEECCCcChHHHHHHHH-------------c-----CCEEEEEeCC-----------HHHHHHHHHHHHHcCCCCC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKK-------------F-----GAKCQGITLS-----------PVQAQRANALAAARGLADK 209 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~-------------~-----~~~v~gvD~s-----------~~~~~~a~~~~~~~~~~~~ 209 (371)
..+|+|+||++|..+..+... . ..+|+..|+. +.+.+.+++ ..|-..+
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~---~~g~~~~ 129 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEK---ENGRKIG 129 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHH---HTCCCTT
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhh---hccCCCC
Confidence 589999999999998877765 1 2468888987 444433222 2221123
Q ss_pred eEEEEcCCCC---CCCCCCccceEEccccccCcCCHH---------------------------------------HHHH
Q 017428 210 VSFQVGDALQ---QPFPDGQFDLVWSMESGEHMPDKS---------------------------------------KFVS 247 (371)
Q Consensus 210 v~~~~~d~~~---~~~~~~~fD~v~~~~~l~~~~~~~---------------------------------------~~l~ 247 (371)
..|+.+.... ..||++++|+|+++.+||++.+.+ .+|+
T Consensus 130 ~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~ 209 (384)
T 2efj_A 130 SCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLR 209 (384)
T ss_dssp SEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4566666554 358899999999999999985432 1255
Q ss_pred HHHHhcCCCcEEEEEeccCCCC--CcCcc-ccChHHHHHHHH------HhhccCCC-CCCCHHHHHHHHHhC-CCceEEE
Q 017428 248 ELARVTAPAGTIIIVTWCHRDL--APSEE-SLQPWEQELLKK------ICDAYYLP-AWCSTADYVKLLQSL-SLEDIKA 316 (371)
Q Consensus 248 ~~~~~LkpgG~l~i~~~~~~~~--~~~~~-~~~~~~~~~~~~------~~~~~~~~-~~~~~~~~~~ll~~a-GF~~v~~ 316 (371)
..++.|+|||++++...+.... .+... .+......+..+ -.+.+..| .+.+.++++.++++. ||++..+
T Consensus 210 ~Ra~eL~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~l 289 (384)
T 2efj_A 210 IHSEELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYL 289 (384)
T ss_dssp HHHHHEEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEEE
T ss_pred HHHHHhccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEEEE
Confidence 5589999999999998776543 21100 111111111111 11223333 246899999999998 5888887
Q ss_pred EecCC
Q 017428 317 EDWSQ 321 (371)
Q Consensus 317 ~~~~~ 321 (371)
+.+..
T Consensus 290 e~~~~ 294 (384)
T 2efj_A 290 ETFNA 294 (384)
T ss_dssp EEEEE
T ss_pred EEEee
Confidence 76544
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=2e-08 Score=99.67 Aligned_cols=100 Identities=16% Similarity=0.101 Sum_probs=77.4
Q ss_pred CCEEEEECCCcChHH---HHHHHHcCC--EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcc
Q 017428 159 PKNVVDVGCGIGGSS---RYLAKKFGA--KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSM 233 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~---~~l~~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~ 233 (371)
...|||||||+|.+. ...+++.+. +|++||-++ +...|++..+.+++.++|+++.+|+++...| +++|+|++=
T Consensus 358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~dkVtVI~gd~eev~LP-EKVDIIVSE 435 (637)
T 4gqb_A 358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWGSQVTVVSSDMREWVAP-EKADIIVSE 435 (637)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTGGGEEEEESCTTTCCCS-SCEEEEECC
T ss_pred CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCCCeEEEEeCcceeccCC-cccCEEEEE
Confidence 467999999999984 444444333 689999997 6778899999999999999999999998765 789999973
Q ss_pred ccccCc--CCHHHHHHHHHHhcCCCcEEE
Q 017428 234 ESGEHM--PDKSKFVSELARVTAPAGTII 260 (371)
Q Consensus 234 ~~l~~~--~~~~~~l~~~~~~LkpgG~l~ 260 (371)
.+=..+ +....++....|.|||||.++
T Consensus 436 wMG~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 436 LLGSFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp CCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred cCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence 221111 234467888899999999864
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.86 E-value=3.6e-10 Score=100.97 Aligned_cols=79 Identities=24% Similarity=0.319 Sum_probs=65.8
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCH-------HHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C-CCC--Ccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSP-------VQAQRANALAAARGLADKVSFQVGDALQQ-P-FPD--GQF 227 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~-------~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~~~--~~f 227 (371)
+.+|||+|||+|..+..++.. +++|+|+|+++ .+++.|+++++.+++.++++++.+|+.+. + +++ ++|
T Consensus 84 ~~~VLDlgcG~G~~a~~lA~~-g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~~~~f 162 (258)
T 2r6z_A 84 HPTVWDATAGLGRDSFVLASL-GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQGKP 162 (258)
T ss_dssp CCCEEETTCTTCHHHHHHHHT-TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHHCCC
T ss_pred cCeEEEeeCccCHHHHHHHHh-CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhccCCCc
Confidence 689999999999999999986 78999999999 99999998877776655699999998774 2 344 789
Q ss_pred ceEEccccccC
Q 017428 228 DLVWSMESGEH 238 (371)
Q Consensus 228 D~v~~~~~l~~ 238 (371)
|+|++.-.+.+
T Consensus 163 D~V~~dP~~~~ 173 (258)
T 2r6z_A 163 DIVYLDPMYPE 173 (258)
T ss_dssp SEEEECCCC--
T ss_pred cEEEECCCCCC
Confidence 99999766554
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=1.8e-08 Score=102.36 Aligned_cols=119 Identities=18% Similarity=0.217 Sum_probs=89.2
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc---------------------------------------
Q 017428 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--------------------------------------- 180 (371)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~--------------------------------------- 180 (371)
.+...++......+ +..|||.+||+|.+++.++...
T Consensus 177 ~LAa~ll~~~~~~~-----~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~ 251 (703)
T 3v97_A 177 TLAAAIVMRSGWQP-----GTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKG 251 (703)
T ss_dssp HHHHHHHHHTTCCT-----TSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCC-----CCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhc
Confidence 35556666666544 7889999999999999887642
Q ss_pred ----CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCccceEEccccccC-c---CCHHHHHH---
Q 017428 181 ----GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWSMESGEH-M---PDKSKFVS--- 247 (371)
Q Consensus 181 ----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~v~~~~~l~~-~---~~~~~~l~--- 247 (371)
...|+|+|+++.+++.|+.++...|+.+.+.|.++|+.++. ...++||+|+++--... + .+...+++
T Consensus 252 ~~~~~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~ 331 (703)
T 3v97_A 252 LAEYSSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLG 331 (703)
T ss_dssp HHHCCCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHH
T ss_pred cccCCccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHH
Confidence 25799999999999999999999999877999999998873 33348999999843321 1 12334444
Q ss_pred HHHHhcCCCcEEEEEe
Q 017428 248 ELARVTAPAGTIIIVT 263 (371)
Q Consensus 248 ~~~~~LkpgG~l~i~~ 263 (371)
++.+.+.|||.+++..
T Consensus 332 ~~lk~~~~g~~~~ilt 347 (703)
T 3v97_A 332 RIMKNQFGGWNLSLFS 347 (703)
T ss_dssp HHHHHHCTTCEEEEEE
T ss_pred HHHHhhCCCCeEEEEe
Confidence 4445556899999976
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.83 E-value=8.7e-09 Score=92.95 Aligned_cols=72 Identities=18% Similarity=0.297 Sum_probs=61.0
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCE----EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAK----CQGITLSPVQAQRANALAAARGLADKVSFQVGD 216 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~----v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d 216 (371)
.++.+++.+.+.+ +.+|||||||+|.++..+++.. .. |+|+|+++.+++.++++. .++++++++|
T Consensus 30 i~~~iv~~~~~~~-----~~~VLEIG~G~G~lt~~La~~~-~~~~~~V~avDid~~~l~~a~~~~-----~~~v~~i~~D 98 (279)
T 3uzu_A 30 VIDAIVAAIRPER-----GERMVEIGPGLGALTGPVIARL-ATPGSPLHAVELDRDLIGRLEQRF-----GELLELHAGD 98 (279)
T ss_dssp HHHHHHHHHCCCT-----TCEEEEECCTTSTTHHHHHHHH-CBTTBCEEEEECCHHHHHHHHHHH-----GGGEEEEESC
T ss_pred HHHHHHHhcCCCC-----cCEEEEEccccHHHHHHHHHhC-CCcCCeEEEEECCHHHHHHHHHhc-----CCCcEEEECC
Confidence 5566777776654 8899999999999999999874 45 999999999999999883 2579999999
Q ss_pred CCCCCCC
Q 017428 217 ALQQPFP 223 (371)
Q Consensus 217 ~~~~~~~ 223 (371)
+.+.+++
T Consensus 99 ~~~~~~~ 105 (279)
T 3uzu_A 99 ALTFDFG 105 (279)
T ss_dssp GGGCCGG
T ss_pred hhcCChh
Confidence 9998764
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.80 E-value=1.3e-08 Score=100.31 Aligned_cols=107 Identities=14% Similarity=0.098 Sum_probs=84.2
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-------------------CCEEEEEeCCHHHHHHHHHHHHHcCCCC----CeEEEE
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF-------------------GAKCQGITLSPVQAQRANALAAARGLAD----KVSFQV 214 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~-------------------~~~v~gvD~s~~~~~~a~~~~~~~~~~~----~v~~~~ 214 (371)
++.+|||.|||+|.++..+++.+ ...++|+|+++.+++.|+.++...++.. ++.+.+
T Consensus 169 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~~ 248 (541)
T 2ar0_A 169 PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRL 248 (541)
T ss_dssp TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEE
T ss_pred CCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeEe
Confidence 37899999999999998887754 1379999999999999999988777743 277899
Q ss_pred cCCCCCC-CCCCccceEEccccccCcCC--------------HHHHHHHHHHhcCCCcEEEEEec
Q 017428 215 GDALQQP-FPDGQFDLVWSMESGEHMPD--------------KSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 215 ~d~~~~~-~~~~~fD~v~~~~~l~~~~~--------------~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
+|....+ ...++||+|+++--+..... ...+++++.+.|+|||++.++..
T Consensus 249 gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p 313 (541)
T 2ar0_A 249 GNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP 313 (541)
T ss_dssp SCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEec
Confidence 9986643 34578999999755443221 24789999999999999998763
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.80 E-value=2.9e-08 Score=88.13 Aligned_cols=89 Identities=18% Similarity=0.173 Sum_probs=67.4
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (371)
.++.+++.+...+ +.+|||||||+|.++..+++....+|+|+|+++.+++.++++ . ..+++++++|+.+.
T Consensus 19 i~~~iv~~~~~~~-----~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~---~--~~~v~~i~~D~~~~ 88 (249)
T 3ftd_A 19 VLKKIAEELNIEE-----GNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI---G--DERLEVINEDASKF 88 (249)
T ss_dssp HHHHHHHHTTCCT-----TCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS---C--CTTEEEECSCTTTC
T ss_pred HHHHHHHhcCCCC-----cCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc---c--CCCeEEEEcchhhC
Confidence 5667777776654 889999999999999999987337999999999999999876 1 25899999999998
Q ss_pred CCCCCccceEEccccccCc
Q 017428 221 PFPDGQFDLVWSMESGEHM 239 (371)
Q Consensus 221 ~~~~~~fD~v~~~~~l~~~ 239 (371)
++++..-+.++..+.-+++
T Consensus 89 ~~~~~~~~~~vv~NlPy~i 107 (249)
T 3ftd_A 89 PFCSLGKELKVVGNLPYNV 107 (249)
T ss_dssp CGGGSCSSEEEEEECCTTT
T ss_pred ChhHccCCcEEEEECchhc
Confidence 7654211333444444444
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.77 E-value=3.1e-09 Score=100.47 Aligned_cols=73 Identities=21% Similarity=0.119 Sum_probs=64.1
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc--CCCCCeEEEEcCCCCC-C-CCCCccceEEcc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR--GLADKVSFQVGDALQQ-P-FPDGQFDLVWSM 233 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~-~-~~~~~fD~v~~~ 233 (371)
+.+|||+|||+|..+..+++. +.+|+++|+|+.+++.|+++++.. |+ .+++++++|+.+. + .++++||+|++.
T Consensus 94 g~~VLDLgcG~G~~al~LA~~-g~~V~~VD~s~~~l~~Ar~N~~~~~~gl-~~i~~i~~Da~~~L~~~~~~~fDvV~lD 170 (410)
T 3ll7_A 94 GTKVVDLTGGLGIDFIALMSK-ASQGIYIERNDETAVAARHNIPLLLNEG-KDVNILTGDFKEYLPLIKTFHPDYIYVD 170 (410)
T ss_dssp TCEEEESSCSSSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHSCTT-CEEEEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred CCEEEEeCCCchHHHHHHHhc-CCEEEEEECCHHHHHHHHHhHHHhccCC-CcEEEEECcHHHhhhhccCCCceEEEEC
Confidence 789999999999999999886 789999999999999999999987 77 6899999999874 2 124689999984
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.73 E-value=2.5e-08 Score=92.66 Aligned_cols=162 Identities=14% Similarity=0.101 Sum_probs=104.1
Q ss_pred CCCEEEEECCCcChHHHHHHHH----------------c-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC--
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKK----------------F-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL-- 218 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~----------------~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~-- 218 (371)
...+|+|+||++|..+..+... . ..+|+..|+........-+.+....-..+..|+.+...
T Consensus 51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSF 130 (359)
T 1m6e_X 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF 130 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhh
Confidence 3578999999999876654432 1 25789999998888776655432100002345554433
Q ss_pred -CCCCCCCccceEEccccccCcCCH---------------------------------HHHHHHHHHhcCCCcEEEEEec
Q 017428 219 -QQPFPDGQFDLVWSMESGEHMPDK---------------------------------SKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 219 -~~~~~~~~fD~v~~~~~l~~~~~~---------------------------------~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
...+|++++|+|+++.+||++.+. ..+|+..++.|+|||++++...
T Consensus 131 y~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~~ 210 (359)
T 1m6e_X 131 YGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTIL 210 (359)
T ss_dssp SSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEE
T ss_pred hhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEe
Confidence 346889999999999999998542 2458888999999999999887
Q ss_pred cCCCCCcCcc---ccChHHHHHHHHHhh----------ccCCC-CCCCHHHHHHHHHhCCC-ceEEEEec
Q 017428 265 CHRDLAPSEE---SLQPWEQELLKKICD----------AYYLP-AWCSTADYVKLLQSLSL-EDIKAEDW 319 (371)
Q Consensus 265 ~~~~~~~~~~---~~~~~~~~~~~~~~~----------~~~~~-~~~~~~~~~~ll~~aGF-~~v~~~~~ 319 (371)
+.....+... .+.......+..... .+..| .+.+.++++.++++.|. .+...+.+
T Consensus 211 gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~~~~ie~~G~F~i~~~e~~ 280 (359)
T 1m6e_X 211 GRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEAS 280 (359)
T ss_dssp ECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEEEE
T ss_pred cCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCCccCCCHHHHHHHHHHcCCceEEEEEEE
Confidence 6654322111 122223333322111 12333 24689999999999964 77766554
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.2e-08 Score=90.88 Aligned_cols=127 Identities=21% Similarity=0.211 Sum_probs=85.9
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-------C------CEEEEEeCCH---HHHH-----------HHHHHHHHcC-----
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF-------G------AKCQGITLSP---VQAQ-----------RANALAAARG----- 205 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~-------~------~~v~gvD~s~---~~~~-----------~a~~~~~~~~----- 205 (371)
+..+|||+|+|+|..+..+++.. . .+|+++|..| +.+. .|++.++.+.
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 36799999999999988876542 1 4899999876 4433 5666655421
Q ss_pred -----CC---CCeEEEEcCCCC-CC-CCC---CccceEEccc-cccCcCC--HHHHHHHHHHhcCCCcEEEEEeccCCCC
Q 017428 206 -----LA---DKVSFQVGDALQ-QP-FPD---GQFDLVWSME-SGEHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDL 269 (371)
Q Consensus 206 -----~~---~~v~~~~~d~~~-~~-~~~---~~fD~v~~~~-~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~ 269 (371)
+. .+++++.+|+.+ ++ .++ ..||+|+.-. .-...++ ...+++.+.++|+|||.|+...
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~tys------ 213 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFT------ 213 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEESC------
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEEEe------
Confidence 11 357789999876 33 222 2799999843 2221223 2679999999999999988522
Q ss_pred CcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEEEe
Q 017428 270 APSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAED 318 (371)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~ 318 (371)
....+++.|.++||.+.....
T Consensus 214 ----------------------------aa~~vrr~L~~aGF~v~~~~g 234 (257)
T 2qy6_A 214 ----------------------------SAGFVRRGLQEAGFTMQKRKG 234 (257)
T ss_dssp ----------------------------CBHHHHHHHHHHTEEEEEECC
T ss_pred ----------------------------CCHHHHHHHHHCCCEEEeCCC
Confidence 112467888999999776543
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.72 E-value=8.2e-09 Score=91.85 Aligned_cols=96 Identities=23% Similarity=0.238 Sum_probs=68.5
Q ss_pred CEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc-------C-CCCCeEEEEcCCCCC-CCCCCccceE
Q 017428 160 KNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR-------G-LADKVSFQVGDALQQ-PFPDGQFDLV 230 (371)
Q Consensus 160 ~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~-------~-~~~~v~~~~~d~~~~-~~~~~~fD~v 230 (371)
.+|||+|||+|..+..++.. +++|+++|.++.+.+.+++.++.. + +..+++++.+|..+. +...++||+|
T Consensus 90 ~~VLDl~~G~G~dal~lA~~-g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~~~fDvV 168 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFVLASV-GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVV 168 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHH-TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSEE
T ss_pred CEEEEcCCcCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCcccCCEE
Confidence 89999999999999999998 779999999999877776665432 1 224699999998763 3222479999
Q ss_pred EccccccCcCCHHHHHHHHHHhcCCCc
Q 017428 231 WSMESGEHMPDKSKFVSELARVTAPAG 257 (371)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~~~LkpgG 257 (371)
++.-.+.+- .....+++..++|++.+
T Consensus 169 ~lDP~y~~~-~~saavkk~~~~lr~l~ 194 (258)
T 2oyr_A 169 YLDPMFPHK-QKSALVKKEMRVFQSLV 194 (258)
T ss_dssp EECCCCCCC-CC-----HHHHHHHHHS
T ss_pred EEcCCCCCc-ccchHHHHHHHHHHHhh
Confidence 998777553 22345666666776654
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.67 E-value=9.8e-08 Score=85.94 Aligned_cols=105 Identities=15% Similarity=0.161 Sum_probs=82.7
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHc--C--CCCCeEEEEcCCCCC-CCCCCccceEEc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAAR--G--LADKVSFQVGDALQQ-PFPDGQFDLVWS 232 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~--~--~~~~v~~~~~d~~~~-~~~~~~fD~v~~ 232 (371)
+.+||=||.|.|..+..+++.. ..+|+.||+++..++.+++.+... + -.++++++.+|.... .-..++||+|+.
T Consensus 84 pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvIi~ 163 (294)
T 3o4f_A 84 AKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVIIS 163 (294)
T ss_dssp CCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEEEE
T ss_pred CCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEEEE
Confidence 7899999999999999999865 468999999999999999987532 1 136899999998875 334678999986
Q ss_pred cccccCc-C---CHHHHHHHHHHhcCCCcEEEEEe
Q 017428 233 MESGEHM-P---DKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 233 ~~~l~~~-~---~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
-..=..- . --..+++.+++.|+|||+++...
T Consensus 164 D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~ 198 (294)
T 3o4f_A 164 DCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQN 198 (294)
T ss_dssp SCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEE
T ss_pred eCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEec
Confidence 4321110 1 11578999999999999999865
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=6.7e-08 Score=85.35 Aligned_cols=115 Identities=14% Similarity=0.126 Sum_probs=75.1
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (371)
.+.++.++..++ ++.+|||||||+|.|+..+++..+ ..|+|+|++..+...... ......++.....++..
T Consensus 62 KL~ei~ek~~l~-----~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~---~~~~g~~ii~~~~~~dv 133 (277)
T 3evf_A 62 KLRWFHERGYVK-----LEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMN---VQSLGWNIITFKDKTDI 133 (277)
T ss_dssp HHHHHHHTTSSC-----CCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCC---CCBTTGGGEEEECSCCT
T ss_pred HHHHHHHhCCCC-----CCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccc---cCcCCCCeEEEecccee
Confidence 445555554344 478999999999999999887643 367888887433100000 00000145556776655
Q ss_pred CCCCCCccceEEccccccCcCC----H---HHHHHHHHHhcCCC-cEEEEEec
Q 017428 220 QPFPDGQFDLVWSMESGEHMPD----K---SKFVSELARVTAPA-GTIIIVTW 264 (371)
Q Consensus 220 ~~~~~~~fD~v~~~~~l~~~~~----~---~~~l~~~~~~Lkpg-G~l~i~~~ 264 (371)
..+++++||+|++..+.. ... . ..+++.+.++|+|| |.+++-.+
T Consensus 134 ~~l~~~~~DlVlsD~apn-sG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf 185 (277)
T 3evf_A 134 HRLEPVKCDTLLCDIGES-SSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVL 185 (277)
T ss_dssp TTSCCCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEES
T ss_pred hhcCCCCccEEEecCccC-cCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEec
Confidence 566778999999977655 322 1 13568889999999 99999654
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.65 E-value=1.7e-08 Score=89.69 Aligned_cols=83 Identities=17% Similarity=0.125 Sum_probs=63.0
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCE--EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAK--CQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~--v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (371)
+++.+++.+.+.+ +.+|||||||+|.++. +. . +.+ |+++|+++.+++.+++++... ++++++++|+.
T Consensus 9 i~~~iv~~~~~~~-----~~~VLEIG~G~G~lt~-l~-~-~~~~~v~avEid~~~~~~a~~~~~~~---~~v~~i~~D~~ 77 (252)
T 1qyr_A 9 VIDSIVSAINPQK-----GQAMVEIGPGLAALTE-PV-G-ERLDQLTVIELDRDLAARLQTHPFLG---PKLTIYQQDAM 77 (252)
T ss_dssp HHHHHHHHHCCCT-----TCCEEEECCTTTTTHH-HH-H-TTCSCEEEECCCHHHHHHHHTCTTTG---GGEEEECSCGG
T ss_pred HHHHHHHhcCCCC-----cCEEEEECCCCcHHHH-hh-h-CCCCeEEEEECCHHHHHHHHHHhccC---CceEEEECchh
Confidence 5566677766654 7899999999999999 64 4 456 999999999999999876432 47999999999
Q ss_pred CCCCCCC-----ccceEEccc
Q 017428 219 QQPFPDG-----QFDLVWSME 234 (371)
Q Consensus 219 ~~~~~~~-----~fD~v~~~~ 234 (371)
+.++++. ..|.|+++.
T Consensus 78 ~~~~~~~~~~~~~~~~vvsNl 98 (252)
T 1qyr_A 78 TFNFGELAEKMGQPLRVFGNL 98 (252)
T ss_dssp GCCHHHHHHHHTSCEEEEEEC
T ss_pred hCCHHHhhcccCCceEEEECC
Confidence 8765421 235666554
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.65 E-value=1.2e-07 Score=94.14 Aligned_cols=100 Identities=14% Similarity=0.098 Sum_probs=74.0
Q ss_pred CCEEEEECCCcChHHHHH---HHHcC-----------CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC-
Q 017428 159 PKNVVDVGCGIGGSSRYL---AKKFG-----------AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP- 223 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l---~~~~~-----------~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~- 223 (371)
+..|||||||+|.+.... ++..+ .+|++||.++......+.+.. +++.++|+++.+|+++...+
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~d~VtVI~gd~eev~lp~ 488 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWKRRVTIIESDMRSLPGIA 488 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTTTCSEEEESCGGGHHHHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCCCeEEEEeCchhhccccc
Confidence 568999999999996432 22112 389999999977765555554 77878899999999998653
Q ss_pred ----CCccceEEccccccCcC---CHHHHHHHHHHhcCCCcEEE
Q 017428 224 ----DGQFDLVWSMESGEHMP---DKSKFVSELARVTAPAGTII 260 (371)
Q Consensus 224 ----~~~fD~v~~~~~l~~~~---~~~~~l~~~~~~LkpgG~l~ 260 (371)
.+++|+|++=.+ ..+- -....+..+.+.|||||.++
T Consensus 489 ~~~~~ekVDIIVSElm-Gsfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 489 KDRGFEQPDIIVSELL-GSFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp HHTTCCCCSEEEECCC-BTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred ccCCCCcccEEEEecc-ccccchhccHHHHHHHHHhCCCCcEEE
Confidence 588999987543 3332 23568888889999999754
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.65 E-value=6.3e-08 Score=95.40 Aligned_cols=105 Identities=19% Similarity=0.197 Sum_probs=81.1
Q ss_pred CEEEEECCCcChHHHHHHHHc----------------CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-C
Q 017428 160 KNVVDVGCGIGGSSRYLAKKF----------------GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-F 222 (371)
Q Consensus 160 ~~VLDlG~GtG~~~~~l~~~~----------------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~ 222 (371)
.+|||.+||+|.+...+++.+ ...++|+|+++.++..|+.++...|+..++.+.++|....+ +
T Consensus 246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~~ 325 (544)
T 3khk_A 246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQH 325 (544)
T ss_dssp EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCSC
T ss_pred CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCccc
Confidence 499999999999988876532 35799999999999999999988887655555788876543 4
Q ss_pred CCCccceEEccccccC-------------------------cC---C-HHHHHHHHHHhcCCCcEEEEEec
Q 017428 223 PDGQFDLVWSMESGEH-------------------------MP---D-KSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 223 ~~~~fD~v~~~~~l~~-------------------------~~---~-~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
+..+||+|+++--+.. ++ + .-.+++.+.+.|+|||++.++..
T Consensus 326 ~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP 396 (544)
T 3khk_A 326 PDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLA 396 (544)
T ss_dssp TTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEec
Confidence 5688999998643332 11 0 12689999999999999988763
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.61 E-value=4.4e-07 Score=89.24 Aligned_cols=107 Identities=16% Similarity=0.088 Sum_probs=84.9
Q ss_pred CCCEEEEECCCcChHHHHHHHHc----CCEEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEEEcCCCCC--C-CCCCccce
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF----GAKCQGITLSPVQAQRANALAAARGLA-DKVSFQVGDALQQ--P-FPDGQFDL 229 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~----~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~--~-~~~~~fD~ 229 (371)
++.+|||.+||+|.+...+++.. ...++|+|+++.+...|+.++.-.|+. +++.+..+|.... | .....||+
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~ 300 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDG 300 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSE
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccE
Confidence 47899999999999999888874 468999999999999999998888875 4688999998765 3 34678999
Q ss_pred EEccccccC-------------------cC---C-HHHHHHHHHHhcC-CCcEEEEEec
Q 017428 230 VWSMESGEH-------------------MP---D-KSKFVSELARVTA-PAGTIIIVTW 264 (371)
Q Consensus 230 v~~~~~l~~-------------------~~---~-~~~~l~~~~~~Lk-pgG~l~i~~~ 264 (371)
|+++--+.. ++ + .-.+++.+.+.|+ |||++.++..
T Consensus 301 IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP 359 (542)
T 3lkd_A 301 VLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLP 359 (542)
T ss_dssp EEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEE
T ss_pred EEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEec
Confidence 998622210 10 1 1248999999999 9999988763
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=98.48 E-value=4.8e-07 Score=81.28 Aligned_cols=103 Identities=14% Similarity=0.107 Sum_probs=80.9
Q ss_pred CCEEEEECCCcChHHHHHHHHc------CCEEEEEeCCHH--------------------------HHHHHHHHHHHcCC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF------GAKCQGITLSPV--------------------------QAQRANALAAARGL 206 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~------~~~v~gvD~s~~--------------------------~~~~a~~~~~~~~~ 206 (371)
+.+|||+|+..|..++.++..+ +.+|+++|..+. .++.+++++++.|+
T Consensus 107 pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~gl 186 (282)
T 2wk1_A 107 PGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYDL 186 (282)
T ss_dssp CCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTTC
T ss_pred CCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcCC
Confidence 6799999999999999887653 468999996421 46778999999998
Q ss_pred C-CCeEEEEcCCCC-CC-CCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 207 A-DKVSFQVGDALQ-QP-FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 207 ~-~~v~~~~~d~~~-~~-~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
. ++++++.+|+.+ ++ ++.++||+|++-.-. .......++.+...|+|||++++-+
T Consensus 187 ~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~--y~~~~~~Le~~~p~L~pGGiIv~DD 244 (282)
T 2wk1_A 187 LDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDL--YESTWDTLTNLYPKVSVGGYVIVDD 244 (282)
T ss_dssp CSTTEEEEESCHHHHSTTCCCCCEEEEEECCCS--HHHHHHHHHHHGGGEEEEEEEEESS
T ss_pred CcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCc--cccHHHHHHHHHhhcCCCEEEEEcC
Confidence 4 899999999865 23 445789999987532 1234578999999999999888855
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=1.8e-06 Score=79.79 Aligned_cols=93 Identities=15% Similarity=0.123 Sum_probs=68.2
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
++++|||+||++|+|+..++++ +..|++||+.+-.. ... -.++|.+++.|+.....+.++||+|+|-.+
T Consensus 211 ~G~~vlDLGAaPGGWT~~l~~r-g~~V~aVD~~~l~~-~l~-------~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~-- 279 (375)
T 4auk_A 211 NGMWAVDLGACPGGWTYQLVKR-NMWVYSVDNGPMAQ-SLM-------DTGQVTWLREDGFKFRPTRSNISWMVCDMV-- 279 (375)
T ss_dssp TTCEEEEETCTTCHHHHHHHHT-TCEEEEECSSCCCH-HHH-------TTTCEEEECSCTTTCCCCSSCEEEEEECCS--
T ss_pred CCCEEEEeCcCCCHHHHHHHHC-CCEEEEEEhhhcCh-hhc-------cCCCeEEEeCccccccCCCCCcCEEEEcCC--
Confidence 5899999999999999999987 88999999875221 111 125899999999887666788999998654
Q ss_pred CcCCHHHHHHHHHHhcCCC---cEEEEEe
Q 017428 238 HMPDKSKFVSELARVTAPA---GTIIIVT 263 (371)
Q Consensus 238 ~~~~~~~~l~~~~~~Lkpg---G~l~i~~ 263 (371)
.++..++.-+.++|..| +.++...
T Consensus 280 --~~p~~~~~l~~~wl~~~~~~~aI~~lK 306 (375)
T 4auk_A 280 --EKPAKVAALMAQWLVNGWCRETIFNLK 306 (375)
T ss_dssp --SCHHHHHHHHHHHHHTTSCSEEEEEEE
T ss_pred --CChHHhHHHHHHHHhccccceEEEEEE
Confidence 34556666666655554 5444443
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.33 E-value=2.4e-07 Score=81.97 Aligned_cols=116 Identities=17% Similarity=0.078 Sum_probs=73.7
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (371)
.+.++.++..++ ++.+|||||||+|.|+..+++..+ ..|+|+|++..+...+... .. ...++.....++..
T Consensus 78 KL~ei~eK~~Lk-----~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~-~~--~g~~ii~~~~~~dv 149 (282)
T 3gcz_A 78 KLRWMEERGYVK-----PTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR-TT--LGWNLIRFKDKTDV 149 (282)
T ss_dssp HHHHHHHTTSCC-----CCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC-CB--TTGGGEEEECSCCG
T ss_pred HHHHHHHhcCCC-----CCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc-cc--CCCceEEeeCCcch
Confidence 344555554444 478999999999999999887553 4689999986532211100 00 01133334433333
Q ss_pred CCCCCCccceEEccccccCcCCH-------HHHHHHHHHhcCCC--cEEEEEecc
Q 017428 220 QPFPDGQFDLVWSMESGEHMPDK-------SKFVSELARVTAPA--GTIIIVTWC 265 (371)
Q Consensus 220 ~~~~~~~fD~v~~~~~l~~~~~~-------~~~l~~~~~~Lkpg--G~l~i~~~~ 265 (371)
..++.+++|+|++..+.. .... ..++.-+.++|+|| |.+++-.+.
T Consensus 150 ~~l~~~~~DvVLSDmApn-sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~ 203 (282)
T 3gcz_A 150 FNMEVIPGDTLLCDIGES-SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLC 203 (282)
T ss_dssp GGSCCCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESC
T ss_pred hhcCCCCcCEEEecCccC-CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEec
Confidence 335578899999977665 3221 13577778999999 999997653
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=98.31 E-value=1.1e-06 Score=78.16 Aligned_cols=85 Identities=18% Similarity=0.212 Sum_probs=69.7
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (371)
++.++++.+.+++ +..+||.+||.|..+..++++ +.+|+|+|.++.+++.|++ ++. +++.++++++.++
T Consensus 10 Ll~e~le~L~~~~-----gg~~VD~T~G~GGHS~~il~~-~g~VigiD~Dp~Ai~~A~~-L~~----~rv~lv~~~f~~l 78 (285)
T 1wg8_A 10 LYQEALDLLAVRP-----GGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAVARAKG-LHL----PGLTVVQGNFRHL 78 (285)
T ss_dssp THHHHHHHHTCCT-----TCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHH-TCC----TTEEEEESCGGGH
T ss_pred HHHHHHHhhCCCC-----CCEEEEeCCCCcHHHHHHHHC-CCEEEEEeCCHHHHHHHHh-hcc----CCEEEEECCcchH
Confidence 4567777776654 889999999999999999998 7899999999999999988 533 5899999999886
Q ss_pred C-----CCCCccceEEccccc
Q 017428 221 P-----FPDGQFDLVWSMESG 236 (371)
Q Consensus 221 ~-----~~~~~fD~v~~~~~l 236 (371)
+ ...+++|.|++...+
T Consensus 79 ~~~L~~~g~~~vDgIL~DLGv 99 (285)
T 1wg8_A 79 KRHLAALGVERVDGILADLGV 99 (285)
T ss_dssp HHHHHHTTCSCEEEEEEECSC
T ss_pred HHHHHHcCCCCcCEEEeCCcc
Confidence 3 223579999976544
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.5e-06 Score=87.51 Aligned_cols=106 Identities=8% Similarity=0.016 Sum_probs=75.6
Q ss_pred CCCEEEEECCCcChHHHHHHHHcC----CEEEEEeCCHHHHHHHH--HHHHH----cCCCCCeEEEEcCCCCC-CCCCCc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFG----AKCQGITLSPVQAQRAN--ALAAA----RGLADKVSFQVGDALQQ-PFPDGQ 226 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~----~~v~gvD~s~~~~~~a~--~~~~~----~~~~~~v~~~~~d~~~~-~~~~~~ 226 (371)
++.+|||.|||+|.++..+++.++ .+++|+|+++.+++.|+ ..+.. .++ ....+...|+... +...+.
T Consensus 321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi-~~~~I~~dD~L~~~~~~~~k 399 (878)
T 3s1s_A 321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSN-NAPTITGEDVCSLNPEDFAN 399 (878)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTT-BCCEEECCCGGGCCGGGGTT
T ss_pred CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCC-CcceEEecchhcccccccCC
Confidence 378999999999999999988753 47999999999999994 33322 222 1235556666553 234578
Q ss_pred cceEEccccccC-cC---------------------------C-HHHHHHHHHHhcCCCcEEEEEec
Q 017428 227 FDLVWSMESGEH-MP---------------------------D-KSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 227 fD~v~~~~~l~~-~~---------------------------~-~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
||+|+++--+.. .. + ...+++.+.+.|+|||++.++..
T Consensus 400 FDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP 466 (878)
T 3s1s_A 400 VSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMP 466 (878)
T ss_dssp EEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred CCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEC
Confidence 999999754421 10 1 23478889999999999999873
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=1.5e-06 Score=80.75 Aligned_cols=109 Identities=17% Similarity=0.152 Sum_probs=84.1
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCC-----CCeEEEEcCCCCCC-CCCCccceE
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLA-----DKVSFQVGDALQQP-FPDGQFDLV 230 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~-----~~v~~~~~d~~~~~-~~~~~fD~v 230 (371)
++.+|||+.+|.|+-+..+++.. +..|+++|+++.-+...+++++..+.. .++.+...|...++ ...+.||.|
T Consensus 148 pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD~V 227 (359)
T 4fzv_A 148 PGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYDRV 227 (359)
T ss_dssp TTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEEEE
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCCEE
Confidence 48999999999999999998865 357999999999999999999877642 47888888887753 345789999
Q ss_pred Ecccc--------ccCcCC----------------HHHHHHHHHHhcCCCcEEEEEeccC
Q 017428 231 WSMES--------GEHMPD----------------KSKFVSELARVTAPAGTIIIVTWCH 266 (371)
Q Consensus 231 ~~~~~--------l~~~~~----------------~~~~l~~~~~~LkpgG~l~i~~~~~ 266 (371)
++--- +..-++ ...+|.++.+.|||||.|+.++.+.
T Consensus 228 LlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl 287 (359)
T 4fzv_A 228 LVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSL 287 (359)
T ss_dssp EEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred EECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Confidence 86211 111011 1367888999999999999988654
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.15 E-value=1.2e-06 Score=69.63 Aligned_cols=89 Identities=18% Similarity=0.187 Sum_probs=63.9
Q ss_pred CCEEEEECCCcC-hHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCC-CccceEEccccc
Q 017428 159 PKNVVDVGCGIG-GSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPD-GQFDLVWSMESG 236 (371)
Q Consensus 159 ~~~VLDlG~GtG-~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~fD~v~~~~~l 236 (371)
+.+|||||||.| ..+..|++..+..|+++|+++..+ .++..|+.+..... +.||+|++...-
T Consensus 36 ~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av----------------~~v~dDiF~P~~~~Y~~~DLIYsirPP 99 (153)
T 2k4m_A 36 GTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHG----------------GIVRDDITSPRMEIYRGAALIYSIRPP 99 (153)
T ss_dssp SSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSST----------------TEECCCSSSCCHHHHTTEEEEEEESCC
T ss_pred CCcEEEEccCCChHHHHHHHHhCCCeEEEEECCcccc----------------ceEEccCCCCcccccCCcCEEEEcCCC
Confidence 679999999999 599999985589999999998542 28899998843221 479999765432
Q ss_pred cCcCCHHHHHHHHHHhcCCCcEEEEEeccCCC
Q 017428 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHRD 268 (371)
Q Consensus 237 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 268 (371)
++....+.++.+. -|.-++|.....+.
T Consensus 100 ---~El~~~i~~lA~~--v~adliI~pL~~E~ 126 (153)
T 2k4m_A 100 ---AEIHSSLMRVADA--VGARLIIKPLTGED 126 (153)
T ss_dssp ---TTTHHHHHHHHHH--HTCEEEEECBTTBC
T ss_pred ---HHHHHHHHHHHHH--cCCCEEEEcCCCCc
Confidence 3445555555553 35778887765443
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=3.3e-06 Score=75.15 Aligned_cols=104 Identities=17% Similarity=0.182 Sum_probs=66.2
Q ss_pred CCCEEEEECCCcChHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l 236 (371)
++.+||||||++|.|+..+++..+ ..|+|+|+...+...... ... ...++.....++....+..+.+|+|++..+.
T Consensus 81 ~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~~~--~~~~iv~~~~~~di~~l~~~~~DlVlsD~AP 157 (300)
T 3eld_A 81 ITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-MQT--LGWNIVKFKDKSNVFTMPTEPSDTLLCDIGE 157 (300)
T ss_dssp CCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCB--TTGGGEEEECSCCTTTSCCCCCSEEEECCCC
T ss_pred CCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-ccc--cCCceEEeecCceeeecCCCCcCEEeecCcC
Confidence 589999999999999999998643 468899997532110000 000 0012323333322223456789999997655
Q ss_pred cCcCCH-------HHHHHHHHHhcCCC-cEEEEEecc
Q 017428 237 EHMPDK-------SKFVSELARVTAPA-GTIIIVTWC 265 (371)
Q Consensus 237 ~~~~~~-------~~~l~~~~~~Lkpg-G~l~i~~~~ 265 (371)
. ...+ ..++.-+.++|+|| |.+++-.|.
T Consensus 158 n-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~ 193 (300)
T 3eld_A 158 S-SSNPLVERDRTMKVLENFERWKHVNTENFCVKVLA 193 (300)
T ss_dssp C-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESS
T ss_pred C-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence 5 3322 24577778999999 999997653
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=4.2e-07 Score=103.84 Aligned_cols=146 Identities=16% Similarity=0.094 Sum_probs=74.2
Q ss_pred CCCEEEEECCCcChHHHHHHHHcC------CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-CCCCCccceE
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFG------AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-PFPDGQFDLV 230 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~------~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~v 230 (371)
+..+|||||.|+|..+..+.+.++ .+++..|+|+...+.|+++++.. .+.....|..+. ++..++||+|
T Consensus 1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~----di~~~~~d~~~~~~~~~~~ydlv 1315 (2512)
T 2vz8_A 1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL----HVTQGQWDPANPAPGSLGKADLL 1315 (2512)
T ss_dssp SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH----TEEEECCCSSCCCC-----CCEE
T ss_pred CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc----ccccccccccccccCCCCceeEE
Confidence 478999999999998777666542 37899999999888888877653 244433454442 3445779999
Q ss_pred EccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCC
Q 017428 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLS 310 (371)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aG 310 (371)
++.+++|..++....+.+++++|||||++++.+....... .....+ +..... ....+.+.++|.++|+++|
T Consensus 1316 ia~~vl~~t~~~~~~l~~~~~lL~p~G~l~~~e~~~~~~~---g~~~~~----~~~~~r--~~~~~~~~~~w~~~l~~~g 1386 (2512)
T 2vz8_A 1316 VCNCALATLGDPAVAVGNMAATLKEGGFLLLHTLLAGHPL---GEMVGF----LTSPEQ--GGRHLLSQDQWESLFAGAS 1386 (2512)
T ss_dssp EEECC--------------------CCEEEEEEC-----------------------------------CTTTTSSTTTT
T ss_pred EEcccccccccHHHHHHHHHHhcCCCcEEEEEeccccccc---cccccc----cccccc--cCCcccCHHHHHHHHHhCC
Confidence 9999998888889999999999999999999874321100 000001 100000 0012457778889999999
Q ss_pred CceEEE
Q 017428 311 LEDIKA 316 (371)
Q Consensus 311 F~~v~~ 316 (371)
|..+..
T Consensus 1387 f~~~~~ 1392 (2512)
T 2vz8_A 1387 LHLVAL 1392 (2512)
T ss_dssp EEEEEE
T ss_pred Cceeee
Confidence 998765
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=4.4e-06 Score=77.59 Aligned_cols=106 Identities=13% Similarity=0.074 Sum_probs=78.2
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc-----CC--CCCeEEEEcCCCCCC----CCCCc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR-----GL--ADKVSFQVGDALQQP----FPDGQ 226 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~-----~~--~~~v~~~~~d~~~~~----~~~~~ 226 (371)
++.+||=||.|.|..+..+.+....+|+.||+++..++.+++.+... .. .++++++.+|+...- -..++
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~~ 284 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGRE 284 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCC
T ss_pred CCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccCc
Confidence 46899999999999999998854678999999999999999875321 11 146889999976531 12467
Q ss_pred cceEEccccccC-------cCC---HHHHHHHHHHhcCCCcEEEEEe
Q 017428 227 FDLVWSMESGEH-------MPD---KSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 227 fD~v~~~~~l~~-------~~~---~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
||+|+.-..-.. ... -..+++.+++.|+|||.++...
T Consensus 285 yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~ 331 (381)
T 3c6k_A 285 FDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQG 331 (381)
T ss_dssp EEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred eeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 999997532111 111 1578899999999999998754
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=98.06 E-value=1.1e-05 Score=71.37 Aligned_cols=115 Identities=17% Similarity=0.276 Sum_probs=75.7
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc-CCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQVG-DAL 218 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~ 218 (371)
.+..+.+...+++ +.+||||||++|.|+.+++...+ ..|+|+|+-..-.+.- ...++.++ +.|.+... |+.
T Consensus 82 KL~ei~~~~~l~~-----~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P-~~~~ql~w-~lV~~~~~~Dv~ 154 (321)
T 3lkz_A 82 KLRWLVERRFLEP-----VGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEP-QLVQSYGW-NIVTMKSGVDVF 154 (321)
T ss_dssp HHHHHHHTTSCCC-----CEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCC-CCCCBTTG-GGEEEECSCCTT
T ss_pred HHHHHHHhcCCCC-----CCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCc-chhhhcCC-cceEEEeccCHh
Confidence 4455555544544 78999999999999998888764 4699999976511000 00000111 24778877 876
Q ss_pred CCCCCCCccceEEccccccCcCCHH-------HHHHHHHHhcCCC-cEEEEEecc
Q 017428 219 QQPFPDGQFDLVWSMESGEHMPDKS-------KFVSELARVTAPA-GTIIIVTWC 265 (371)
Q Consensus 219 ~~~~~~~~fD~v~~~~~l~~~~~~~-------~~l~~~~~~Lkpg-G~l~i~~~~ 265 (371)
.++ ..++|+|+|--. +.-+++. ++|+-+.++|++| |-+++-.++
T Consensus 155 ~l~--~~~~D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~ 206 (321)
T 3lkz_A 155 YRP--SECCDTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLC 206 (321)
T ss_dssp SSC--CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESC
T ss_pred hCC--CCCCCEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcC
Confidence 664 266999998665 5445431 3667778999999 888886543
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.98 E-value=0.00011 Score=72.04 Aligned_cols=118 Identities=14% Similarity=0.153 Sum_probs=83.5
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--------------CCEEEEEeCCHHHHHHHHHHHHHcCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--------------GAKCQGITLSPVQAQRANALAAARGL 206 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~--------------~~~v~gvD~s~~~~~~a~~~~~~~~~ 206 (371)
+++.+++.+... ++.+|+|-+||+|.+.....+.. ...++|+|+++.+...|+.+.--+|+
T Consensus 205 Vv~lmv~l~~p~-----~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~ 279 (530)
T 3ufb_A 205 VVRFMVEVMDPQ-----LGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGL 279 (530)
T ss_dssp HHHHHHHHHCCC-----TTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhccC-----CCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCC
Confidence 334444444433 37799999999999988776543 24699999999999999988777776
Q ss_pred CCCeEEEEcCCCCCCC----CCCccceEEccccccCc---------------CCH-HHHHHHHHHhcC-------CCcEE
Q 017428 207 ADKVSFQVGDALQQPF----PDGQFDLVWSMESGEHM---------------PDK-SKFVSELARVTA-------PAGTI 259 (371)
Q Consensus 207 ~~~v~~~~~d~~~~~~----~~~~fD~v~~~~~l~~~---------------~~~-~~~l~~~~~~Lk-------pgG~l 259 (371)
. ...+..+|....+. ....||+|+++--+..- .+. ..+++.+.+.|| |||++
T Consensus 280 ~-~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~ 358 (530)
T 3ufb_A 280 E-YPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRA 358 (530)
T ss_dssp S-CCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEE
T ss_pred c-cccccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceE
Confidence 3 45677888765442 24579999997554321 111 356788888887 79999
Q ss_pred EEEec
Q 017428 260 IIVTW 264 (371)
Q Consensus 260 ~i~~~ 264 (371)
.++..
T Consensus 359 avVlP 363 (530)
T 3ufb_A 359 AVVVP 363 (530)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 88864
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=1.2e-05 Score=69.87 Aligned_cols=94 Identities=21% Similarity=0.297 Sum_probs=61.7
Q ss_pred CCCEEEEECCCcChHHHHHHHH--cC---CEEEEEe--CCHHHHHHHHHHHHHcCCCCCe---EEEEc-CCCCCCCCCCc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKK--FG---AKCQGIT--LSPVQAQRANALAAARGLADKV---SFQVG-DALQQPFPDGQ 226 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~--~~---~~v~gvD--~s~~~~~~a~~~~~~~~~~~~v---~~~~~-d~~~~~~~~~~ 226 (371)
|+.+|||+||+.|.|+...++. .+ ..++|+| +.|.. .++.++ .|.++ |+.+++ ...
T Consensus 73 pg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~-----------~~~~Gv~~i~~~~G~Df~~~~--~~~ 139 (269)
T 2px2_A 73 PIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPML-----------MQSYGWNIVTMKSGVDVFYKP--SEI 139 (269)
T ss_dssp CCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCC-----------CCSTTGGGEEEECSCCGGGSC--CCC
T ss_pred CCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCc-----------ccCCCceEEEeeccCCccCCC--CCC
Confidence 5999999999999999999987 31 2345555 22200 011234 45546 988753 467
Q ss_pred cceEEccccccCcCCH----H---HHHHHHHHhcCCCc-EEEEEecc
Q 017428 227 FDLVWSMESGEHMPDK----S---KFVSELARVTAPAG-TIIIVTWC 265 (371)
Q Consensus 227 fD~v~~~~~l~~~~~~----~---~~l~~~~~~LkpgG-~l~i~~~~ 265 (371)
+|+|+|-.+-. -.++ . .++.-+.++|+||| .+++-.|.
T Consensus 140 ~DvVLSDMAPn-SG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFq 185 (269)
T 2px2_A 140 SDTLLCDIGES-SPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILC 185 (269)
T ss_dssp CSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred CCEEEeCCCCC-CCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECC
Confidence 99999865443 3222 1 25666779999999 88887654
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00011 Score=63.01 Aligned_cols=114 Identities=18% Similarity=0.207 Sum_probs=75.7
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc-CCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQVG-DAL 218 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~ 218 (371)
.+..+.++..+++ +.+||||||++|.|+..++...+ ..|+|+|+-..-.+.- ...+..|+ +.+.|..+ |+.
T Consensus 66 KL~ei~ek~~l~~-----g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P-~~~~s~gw-n~v~fk~gvDv~ 138 (267)
T 3p8z_A 66 KLQWFVERNMVIP-----EGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEP-VPMSTYGW-NIVKLMSGKDVF 138 (267)
T ss_dssp HHHHHHHTTSSCC-----CEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCC-CCCCCTTT-TSEEEECSCCGG
T ss_pred HHHHHHHhcCCCC-----CCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCc-chhhhcCc-CceEEEecccee
Confidence 4455555554544 88999999999999999888774 4699999976422100 00111233 57999999 976
Q ss_pred CCCCCCCccceEEccccccCcCCH-------HHHHHHHHHhcCCCcEEEEEecc
Q 017428 219 QQPFPDGQFDLVWSMESGEHMPDK-------SKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 219 ~~~~~~~~fD~v~~~~~l~~~~~~-------~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
..+ ..++|.|+|--.= .-+++ -++|+-+.++|++ |-+++-.++
T Consensus 139 ~~~--~~~~DtllcDIge-Ss~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~ 188 (267)
T 3p8z_A 139 YLP--PEKCDTLLCDIGE-SSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLN 188 (267)
T ss_dssp GCC--CCCCSEEEECCCC-CCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESC
T ss_pred ecC--CccccEEEEecCC-CCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEcc
Confidence 654 3679999986544 22332 1366777899999 777775543
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00026 Score=65.17 Aligned_cols=150 Identities=15% Similarity=0.049 Sum_probs=100.4
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcC--------------------CCCCeEEEEcCC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARG--------------------LADKVSFQVGDA 217 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~--------------------~~~~v~~~~~d~ 217 (371)
...|+.+|||.......+.... +..++-||. |+.++.-++.+...+ .+++..++..|+
T Consensus 98 ~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~DL 176 (334)
T 1rjd_A 98 KVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDL 176 (334)
T ss_dssp SEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCT
T ss_pred CcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecCC
Confidence 6789999999999999998764 567788888 888888777776642 136899999999
Q ss_pred CCCCC---------CCCccceEEccccccCcCC--HHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHH
Q 017428 218 LQQPF---------PDGQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKK 286 (371)
Q Consensus 218 ~~~~~---------~~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (371)
.+... ..+...++++-.++.+++. ...+++.+.+.. |+|.+++.+...+.. + ...+.......+..
T Consensus 177 ~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~~~-~-~~~fg~~m~~~l~~ 253 (334)
T 1rjd_A 177 NDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGGSQ-P-NDRFGAIMQSNLKE 253 (334)
T ss_dssp TCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCCCS-T-TCCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccCCCC-C-cchHHHHHHHHhhc
Confidence 87421 1245677888888888854 467888888876 788888777654311 1 11221111111221
Q ss_pred -Hhhc-cCCCCCCCHHHHHHHHHhCCCc
Q 017428 287 -ICDA-YYLPAWCSTADYVKLLQSLSLE 312 (371)
Q Consensus 287 -~~~~-~~~~~~~~~~~~~~ll~~aGF~ 312 (371)
.... .....+.++++..+.|.++||.
T Consensus 254 ~rg~~l~~~~~y~s~~~~~~rl~~~Gf~ 281 (334)
T 1rjd_A 254 SRNLEMPTLMTYNSKEKYASRWSAAPNV 281 (334)
T ss_dssp HHCCCCTTTTTTCSHHHHHGGGTTSSEE
T ss_pred ccCCcccccccCCCHHHHHHHHHHCCCC
Confidence 1111 1111346899999999999997
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=97.84 E-value=6.9e-05 Score=68.04 Aligned_cols=59 Identities=25% Similarity=0.216 Sum_probs=49.4
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcC
Q 017428 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARG 205 (371)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~ 205 (371)
.+++.++.... . ++..|||++||+|..+..+++. +.+++|+|+++.+++.|++++....
T Consensus 223 ~l~~~~i~~~~-~-----~~~~vlD~f~GsGt~~~~a~~~-g~~~~g~e~~~~~~~~a~~r~~~~~ 281 (297)
T 2zig_A 223 ELAERLVRMFS-F-----VGDVVLDPFAGTGTTLIAAARW-GRRALGVELVPRYAQLAKERFAREV 281 (297)
T ss_dssp HHHHHHHHHHC-C-----TTCEEEETTCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhC-C-----CCCEEEECCCCCCHHHHHHHHc-CCeEEEEeCCHHHHHHHHHHHHHhc
Confidence 45666666654 2 3789999999999999998775 8899999999999999999987753
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00012 Score=66.61 Aligned_cols=87 Identities=16% Similarity=0.141 Sum_probs=69.2
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (371)
+++++++.+.+++ +..++|..||.|..+..+++.+ ..+|+|+|.++.+++.|+ ++ ..+++.++++++.
T Consensus 45 Ll~Evl~~L~i~p-----ggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL----~~~Rv~lv~~nF~ 114 (347)
T 3tka_A 45 LLDEAVNGLNIRP-----DGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI----DDPRFSIIHGPFS 114 (347)
T ss_dssp TTHHHHHHTCCCT-----TCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC----CCTTEEEEESCGG
T ss_pred cHHHHHHhhCCCC-----CCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh----cCCcEEEEeCCHH
Confidence 5677788877765 8999999999999999999986 469999999999999884 33 2368999999987
Q ss_pred CCC--CC----CCccceEEcccccc
Q 017428 219 QQP--FP----DGQFDLVWSMESGE 237 (371)
Q Consensus 219 ~~~--~~----~~~fD~v~~~~~l~ 237 (371)
++. +. .+++|.|++...+.
T Consensus 115 ~l~~~L~~~g~~~~vDgILfDLGVS 139 (347)
T 3tka_A 115 ALGEYVAERDLIGKIDGILLDLGVS 139 (347)
T ss_dssp GHHHHHHHTTCTTCEEEEEEECSCC
T ss_pred HHHHHHHhcCCCCcccEEEECCccC
Confidence 752 11 13699999876654
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0021 Score=58.43 Aligned_cols=149 Identities=14% Similarity=0.048 Sum_probs=95.8
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCC--CCCeEEEEcCCCCCCC---------CCCcc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGL--ADKVSFQVGDALQQPF---------PDGQF 227 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~~~---------~~~~f 227 (371)
...|++||||-=..+..+...-+..|+-|| .|..++..++.+...+. ..+..++..|+.+ .+ ..+..
T Consensus 103 ~~QvV~LGaGlDTra~Rl~~~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d-~~~~~l~~~g~d~~~P 180 (310)
T 2uyo_A 103 IRQFVILASGLDSRAYRLDWPTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ-DWPPALRSAGFDPSAR 180 (310)
T ss_dssp CCEEEEETCTTCCHHHHSCCCTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS-CHHHHHHHTTCCTTSC
T ss_pred CCeEEEeCCCCCchhhhccCCCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHh-hHHHHHHhccCCCCCC
Confidence 356999999987776555421146899999 49999999998876432 3578899999987 31 11233
Q ss_pred ceEEccccccCcCC--HHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhcc---------CCCCC
Q 017428 228 DLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAY---------YLPAW 296 (371)
Q Consensus 228 D~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~ 296 (371)
-++++-.+++++++ ...+++.+...+.||+.|++.....+. +. . . .............. .....
T Consensus 181 t~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~~~~--~~-~-~-~~~~~~~~~~~~~~g~~~~~~l~~~~~~ 255 (310)
T 2uyo_A 181 TAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSPLHG--DE-W-R-EQMQLRFRRVSDALGFEQAVDVQELIYH 255 (310)
T ss_dssp EEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCCTTC--SH-H-H-HHHHHHHHHHHC-----------CCTTC
T ss_pred EEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEecCCCC--cc-h-h-HHHHHHHHHHHHHcCCcCCCCccccccC
Confidence 46777788888864 467899999988999988886543321 10 0 0 00111120111111 11112
Q ss_pred CC-HHHHHHHHHhCCCceE
Q 017428 297 CS-TADYVKLLQSLSLEDI 314 (371)
Q Consensus 297 ~~-~~~~~~ll~~aGF~~v 314 (371)
.+ .+++.+.|.+.||+.+
T Consensus 256 ~~~~~~~~~~f~~~G~~~~ 274 (310)
T 2uyo_A 256 DENRAVVADWLNRHGWRAT 274 (310)
T ss_dssp CTTCCCHHHHHTTTTEEEE
T ss_pred CCChHHHHHHHHHCcCccc
Confidence 25 7899999999999987
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0007 Score=60.08 Aligned_cols=59 Identities=20% Similarity=0.223 Sum_probs=47.9
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcC
Q 017428 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARG 205 (371)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~ 205 (371)
.+++.++.... . ++..|||..||+|..+....+. +.+++|+|+++..++.|+++++..+
T Consensus 200 ~l~~~~i~~~~-~-----~~~~vlD~f~GsGtt~~~a~~~-gr~~ig~e~~~~~~~~~~~r~~~~~ 258 (260)
T 1g60_A 200 DLIERIIRASS-N-----PNDLVLDCFMGSGTTAIVAKKL-GRNFIGCDMNAEYVNQANFVLNQLE 258 (260)
T ss_dssp HHHHHHHHHHC-C-----TTCEEEESSCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHhC-C-----CCCEEEECCCCCCHHHHHHHHc-CCeEEEEeCCHHHHHHHHHHHHhcc
Confidence 45666666554 2 3889999999999999988775 8899999999999999999987654
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0011 Score=61.31 Aligned_cols=76 Identities=12% Similarity=0.088 Sum_probs=59.1
Q ss_pred HHHHHHHHcCCCCC-CCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 017428 141 MIEETLRFAGVSED-PTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (371)
Q Consensus 141 ~~~~~l~~~~~~~~-~~~~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (371)
+++.+++.+.+.+. ...++..|||||.|.|.++..|++.. ..+|+++++++..+...++.. . .++++++.+|+.
T Consensus 40 i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~---~~~l~ii~~D~l 115 (353)
T 1i4w_A 40 VYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E---GSPLQILKRDPY 115 (353)
T ss_dssp HHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T---TSSCEEECSCTT
T ss_pred HHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c---CCCEEEEECCcc
Confidence 56777777665420 00135899999999999999999875 468999999999999888776 2 258999999996
Q ss_pred CC
Q 017428 219 QQ 220 (371)
Q Consensus 219 ~~ 220 (371)
+.
T Consensus 116 ~~ 117 (353)
T 1i4w_A 116 DW 117 (353)
T ss_dssp CH
T ss_pred ch
Confidence 54
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0021 Score=56.98 Aligned_cols=91 Identities=18% Similarity=0.210 Sum_probs=61.0
Q ss_pred CCCEEEEECC------CcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccce
Q 017428 158 RPKNVVDVGC------GIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDL 229 (371)
Q Consensus 158 ~~~~VLDlG~------GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 229 (371)
.+++|||+|+ -.|.+ .+.+.. ++.|+++|+.+-.. ... .++++|..... ..++||+
T Consensus 109 ~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~s------------da~-~~IqGD~~~~~-~~~k~DL 172 (344)
T 3r24_A 109 YNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVS------------DAD-STLIGDCATVH-TANKWDL 172 (344)
T ss_dssp TTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBC------------SSS-EEEESCGGGEE-ESSCEEE
T ss_pred CCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCccccc------------CCC-eEEEccccccc-cCCCCCE
Confidence 4899999997 44553 233323 36999999987321 123 45999976543 3488999
Q ss_pred EEccccc---cCc--CC------HHHHHHHHHHhcCCCcEEEEEec
Q 017428 230 VWSMESG---EHM--PD------KSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 230 v~~~~~l---~~~--~~------~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
|++-..- .+. .. .+.++.-+.++|+|||.+++-.+
T Consensus 173 VISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVF 218 (344)
T 3r24_A 173 IISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKIT 218 (344)
T ss_dssp EEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEe
Confidence 9974322 221 11 36677788999999999999764
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0016 Score=58.75 Aligned_cols=126 Identities=15% Similarity=0.118 Sum_probs=77.8
Q ss_pred CCEEEEECCCcChHHHHHHHH---c--CC--EEEEEeCCH--------H-HHHHHHHHHHHcC--CCCC--eEEEEcCCC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKK---F--GA--KCQGITLSP--------V-QAQRANALAAARG--LADK--VSFQVGDAL 218 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~---~--~~--~v~gvD~s~--------~-~~~~a~~~~~~~~--~~~~--v~~~~~d~~ 218 (371)
.-+|||+|-|||......... . .. +++.+|..+ . ..+..+....... -..+ +.+..+|+.
T Consensus 97 ~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa~ 176 (308)
T 3vyw_A 97 VIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDAR 176 (308)
T ss_dssp EEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCHH
T ss_pred CcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechHH
Confidence 578999999999975443321 1 23 456666421 1 1122222222210 0122 456778875
Q ss_pred CC-C-CCCCccceEEccccccCcCCH----HHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccC
Q 017428 219 QQ-P-FPDGQFDLVWSMESGEHMPDK----SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYY 292 (371)
Q Consensus 219 ~~-~-~~~~~fD~v~~~~~l~~~~~~----~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (371)
+. + +.+..||+|+.-. +.--.++ ..+++.++++++|||.+.-.
T Consensus 177 ~~l~~l~~~~~Da~flDg-FsP~kNPeLWs~e~f~~l~~~~~pgg~laTY------------------------------ 225 (308)
T 3vyw_A 177 KRIKEVENFKADAVFHDA-FSPYKNPELWTLDFLSLIKERIDEKGYWVSY------------------------------ 225 (308)
T ss_dssp HHGGGCCSCCEEEEEECC-SCTTTSGGGGSHHHHHHHHTTEEEEEEEEES------------------------------
T ss_pred HHHhhhcccceeEEEeCC-CCcccCcccCCHHHHHHHHHHhCCCcEEEEE------------------------------
Confidence 52 2 3445799998753 3332333 68999999999999987642
Q ss_pred CCCCCCHHHHHHHHHhCCCceEEEEec
Q 017428 293 LPAWCSTADYVKLLQSLSLEDIKAEDW 319 (371)
Q Consensus 293 ~~~~~~~~~~~~ll~~aGF~~v~~~~~ 319 (371)
.....+++.|+++||++..+.-+
T Consensus 226 ----taag~VRR~L~~aGF~V~k~~G~ 248 (308)
T 3vyw_A 226 ----SSSLSVRKSLLTLGFKVGSSREI 248 (308)
T ss_dssp ----CCCHHHHHHHHHTTCEEEEEECC
T ss_pred ----eCcHHHHHHHHHCCCEEEecCCC
Confidence 23456889999999998877544
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0093 Score=56.17 Aligned_cols=99 Identities=16% Similarity=0.029 Sum_probs=66.5
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C------CCCCccc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P------FPDGQFD 228 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~------~~~~~fD 228 (371)
++.+||-+|+|. |..+..+++..++ +|+++|.++..++.+++ .| ...+...-.+. . .....||
T Consensus 185 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lG----a~~i~~~~~~~~~~~~~~~~~g~g~D 256 (398)
T 2dph_A 185 PGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSD----AG----FETIDLRNSAPLRDQIDQILGKPEVD 256 (398)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHT----TT----CEEEETTSSSCHHHHHHHHHSSSCEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cC----CcEEcCCCcchHHHHHHHHhCCCCCC
Confidence 489999999986 8888889887787 99999999998887754 33 23332211111 0 0123699
Q ss_pred eEEccccccCc--------CCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 229 LVWSMESGEHM--------PDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 229 ~v~~~~~l~~~--------~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
+|+-.-.-... .++...++.+.+.|++||++++...
T Consensus 257 vvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G~ 300 (398)
T 2dph_A 257 CGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPGI 300 (398)
T ss_dssp EEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCSC
T ss_pred EEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEecc
Confidence 99855432210 0123568889999999999887643
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.52 E-value=0.012 Score=54.73 Aligned_cols=94 Identities=18% Similarity=0.209 Sum_probs=65.2
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----CCCCCccceE
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-----PFPDGQFDLV 230 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~fD~v 230 (371)
++.+||-+|+|. |..+..+++..++ .|+++|.++..++.+++. |. -.++..+-.+. ....+.+|+|
T Consensus 190 ~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga---~~vi~~~~~~~~~~~~~~~~gg~D~v 262 (371)
T 1f8f_A 190 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----GA---THVINSKTQDPVAAIKEITDGGVNFA 262 (371)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----TC---SEEEETTTSCHHHHHHHHTTSCEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----CC---CEEecCCccCHHHHHHHhcCCCCcEE
Confidence 489999999986 8888888887787 799999999998887653 32 11222111111 0112379998
Q ss_pred EccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
+-.-. ....++.+.+.|+|||.+++...
T Consensus 263 id~~g------~~~~~~~~~~~l~~~G~iv~~G~ 290 (371)
T 1f8f_A 263 LESTG------SPEILKQGVDALGILGKIAVVGA 290 (371)
T ss_dssp EECSC------CHHHHHHHHHTEEEEEEEEECCC
T ss_pred EECCC------CHHHHHHHHHHHhcCCEEEEeCC
Confidence 75432 13568889999999999988653
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.46 E-value=0.017 Score=54.33 Aligned_cols=99 Identities=21% Similarity=0.158 Sum_probs=67.9
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-CC------CCCCccc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-QP------FPDGQFD 228 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~------~~~~~fD 228 (371)
++.+||-+|+|. |..+..+++..++ .|+++|.+++.++.+++ .|. ..+...-.+ .. .....+|
T Consensus 185 ~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~----lGa----~~i~~~~~~~~~~~v~~~t~g~g~D 256 (398)
T 1kol_A 185 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA----QGF----EIADLSLDTPLHEQIAALLGEPEVD 256 (398)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTC----EEEETTSSSCHHHHHHHHHSSSCEE
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHH----cCC----cEEccCCcchHHHHHHHHhCCCCCC
Confidence 489999999876 8888889888787 79999999998888765 342 322211111 00 1124699
Q ss_pred eEEcccccc---------CcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 229 LVWSMESGE---------HMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 229 ~v~~~~~l~---------~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
+|+-.-.-. |.+++...++.+.+.|++||.+++...
T Consensus 257 vvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G~ 301 (398)
T 1kol_A 257 CAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL 301 (398)
T ss_dssp EEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred EEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEecc
Confidence 998654321 223455678899999999999987653
|
| >3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.32 Score=44.41 Aligned_cols=151 Identities=12% Similarity=0.030 Sum_probs=94.4
Q ss_pred CCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcC----------------------CCCCeEEEE
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARG----------------------LADKVSFQV 214 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~----------------------~~~~v~~~~ 214 (371)
...|+-+|||.-.....+.... +..++=||. |+.++.=++.+...+ .+.+..++.
T Consensus 91 ~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~-P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v~ 169 (334)
T 3iei_A 91 HCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDF-PMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIG 169 (334)
T ss_dssp CSEEEEETCTTCCHHHHHHHTTCCCSEEEEEEC-HHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEEE
T ss_pred CCEEEEeCCCcCchHHHhcCCCCCCCeEEECCc-HHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEEc
Confidence 5789999999988888877642 467778887 555554344443210 146788999
Q ss_pred cCCCCCC----------CCCCccceEEccccccCcCC--HHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHH
Q 017428 215 GDALQQP----------FPDGQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQE 282 (371)
Q Consensus 215 ~d~~~~~----------~~~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~ 282 (371)
.|+.+.. +..+..-++++=.++.+++. ...+++.+.+.. |+|.+++.+...+. ..+. .
T Consensus 170 ~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f-~~~~~i~yE~i~p~-----d~fg----~ 239 (334)
T 3iei_A 170 ADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSF-ERAMFINYEQVNMG-----DRFG----Q 239 (334)
T ss_dssp CCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCTT-----SHHH----H
T ss_pred cccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhC-CCceEEEEeccCCC-----CHHH----H
Confidence 9997731 22334456777778888853 467888888766 55666676755321 1111 1
Q ss_pred HHHHHhhccCCC-----CCCCHHHHHHHHHhCCCceEEEEecC
Q 017428 283 LLKKICDAYYLP-----AWCSTADYVKLLQSLSLEDIKAEDWS 320 (371)
Q Consensus 283 ~~~~~~~~~~~~-----~~~~~~~~~~ll~~aGF~~v~~~~~~ 320 (371)
.+.......+.+ .+.+.++..+.|.++||..+...+..
T Consensus 240 ~M~~~l~~~g~pl~sl~~y~t~~~~~~r~~~~Gw~~~~~~d~~ 282 (334)
T 3iei_A 240 IMIENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAVDMM 282 (334)
T ss_dssp HHHHHHHTTTCCCTTGGGGGCHHHHHHHHHTTTCSEEEEEEHH
T ss_pred HHHHHHHHhCCCCcccccCCCHHHHHHHHHHcCCCcceeecHH
Confidence 121222222222 23578999999999999988765543
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.1 Score=45.71 Aligned_cols=105 Identities=10% Similarity=0.107 Sum_probs=70.9
Q ss_pred CCEEEEECCCcChHHHHHHHH---c-----CCEEEEEe-----CCHH-------------------HHHHHHHHH-----
Q 017428 159 PKNVVDVGCGIGGSSRYLAKK---F-----GAKCQGIT-----LSPV-------------------QAQRANALA----- 201 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~---~-----~~~v~gvD-----~s~~-------------------~~~~a~~~~----- 201 (371)
+..|+|+|+-.|..+..++.. + ..+|+++| +.+. ..+..++.+
T Consensus 70 pG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~ 149 (257)
T 3tos_A 70 PGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHEC 149 (257)
T ss_dssp CSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHT
T ss_pred CCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhh
Confidence 679999999999988887652 1 36899999 3210 011112211
Q ss_pred -HHcCC-CCCeEEEEcCCCCC-C-----CCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEecc
Q 017428 202 -AARGL-ADKVSFQVGDALQQ-P-----FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 202 -~~~~~-~~~v~~~~~d~~~~-~-----~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
+..+. ++++.++.+++.+. + .+.++||+|++-.-. .......++.+...|+|||++++-++.
T Consensus 150 ~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~--Y~~t~~~le~~~p~l~~GGvIv~DD~~ 219 (257)
T 3tos_A 150 SDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL--YEPTKAVLEAIRPYLTKGSIVAFDELD 219 (257)
T ss_dssp TSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC--HHHHHHHHHHHGGGEEEEEEEEESSTT
T ss_pred hhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc--cchHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 12343 47899999998663 2 245679999886532 233466799999999999999986643
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.03 Score=51.53 Aligned_cols=90 Identities=19% Similarity=0.198 Sum_probs=64.5
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l 236 (371)
++.+||-+|+|. |..+..+++..+++|+++|.+++..+.+++ .|.. . ++ .+... +. ..+|+|+-.-.-
T Consensus 176 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----lGa~--~-v~-~~~~~--~~-~~~D~vid~~g~ 244 (348)
T 3two_A 176 KGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALS----MGVK--H-FY-TDPKQ--CK-EELDFIISTIPT 244 (348)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHH----TTCS--E-EE-SSGGG--CC-SCEEEEEECCCS
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHh----cCCC--e-ec-CCHHH--Hh-cCCCEEEECCCc
Confidence 489999999876 788888888779999999999988887765 3431 2 22 33222 22 379999854322
Q ss_pred cCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 237 EHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 237 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
. ..++.+.+.|+|||.+++...
T Consensus 245 ~------~~~~~~~~~l~~~G~iv~~G~ 266 (348)
T 3two_A 245 H------YDLKDYLKLLTYNGDLALVGL 266 (348)
T ss_dssp C------CCHHHHHTTEEEEEEEEECCC
T ss_pred H------HHHHHHHHHHhcCCEEEEECC
Confidence 1 246788899999999998753
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=95.90 E-value=0.041 Score=51.15 Aligned_cols=98 Identities=21% Similarity=0.262 Sum_probs=68.4
Q ss_pred HHcCCCCCCCCCCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---
Q 017428 147 RFAGVSEDPTKRPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--- 221 (371)
Q Consensus 147 ~~~~~~~~~~~~~~~VLDlG~Gt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--- 221 (371)
....+++ +.+||-+|+|. |..+..+++..|+ .|+++|.++...+.+++ .|.. ..+ |..+..
T Consensus 176 ~~~~~~~-----g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~---~vi--~~~~~~~~~ 241 (370)
T 4ej6_A 176 DLSGIKA-----GSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEE----VGAT---ATV--DPSAGDVVE 241 (370)
T ss_dssp HHHTCCT-----TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHH----HTCS---EEE--CTTSSCHHH
T ss_pred HhcCCCC-----CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCC---EEE--CCCCcCHHH
Confidence 4455554 89999999875 7788888887787 89999999998887766 3431 122 221111
Q ss_pred -------CCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 222 -------FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 222 -------~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
...+.+|+|+-.-. . ...++.+.+.|++||.+++...
T Consensus 242 ~i~~~~~~~~gg~Dvvid~~G-----~-~~~~~~~~~~l~~~G~vv~~G~ 285 (370)
T 4ej6_A 242 AIAGPVGLVPGGVDVVIECAG-----V-AETVKQSTRLAKAGGTVVILGV 285 (370)
T ss_dssp HHHSTTSSSTTCEEEEEECSC-----C-HHHHHHHHHHEEEEEEEEECSC
T ss_pred HHHhhhhccCCCCCEEEECCC-----C-HHHHHHHHHHhccCCEEEEEec
Confidence 22347999985421 1 3568889999999999998654
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=95.87 E-value=0.026 Score=47.25 Aligned_cols=90 Identities=19% Similarity=0.221 Sum_probs=60.1
Q ss_pred CCCEEEEECC--CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------CCCCcc
Q 017428 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------FPDGQF 227 (371)
Q Consensus 158 ~~~~VLDlG~--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~~f 227 (371)
++.+||..|+ |.|..+..++...|++|+++|.+++..+.+++ .+. .. . .|..+.. .....+
T Consensus 38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~----~g~--~~-~--~d~~~~~~~~~~~~~~~~~~~ 108 (198)
T 1pqw_A 38 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSR----LGV--EY-V--GDSRSVDFADEILELTDGYGV 108 (198)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHT----TCC--SE-E--EETTCSTHHHHHHHHTTTCCE
T ss_pred CCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCC--CE-E--eeCCcHHHHHHHHHHhCCCCC
Confidence 4889999994 44666666666558999999999887766543 232 11 1 2332211 112469
Q ss_pred ceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 228 DLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 228 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
|+|+.+.. ...++.+.+.|+|||++++..
T Consensus 109 D~vi~~~g-------~~~~~~~~~~l~~~G~~v~~g 137 (198)
T 1pqw_A 109 DVVLNSLA-------GEAIQRGVQILAPGGRFIELG 137 (198)
T ss_dssp EEEEECCC-------THHHHHHHHTEEEEEEEEECS
T ss_pred eEEEECCc-------hHHHHHHHHHhccCCEEEEEc
Confidence 99986532 146788999999999998864
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=95.86 E-value=0.003 Score=56.15 Aligned_cols=100 Identities=12% Similarity=0.010 Sum_probs=76.5
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-CC---CCCCccceEEccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-QP---FPDGQFDLVWSME 234 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~---~~~~~fD~v~~~~ 234 (371)
+..+||+=+|+|.+++.+.+. +.+++.+|.++..++..+++++. ..+++++..|... +. -+..+||+|++-=
T Consensus 92 ~~~~LDlfaGSGaLgiEaLS~-~d~~vfvE~~~~a~~~L~~Nl~~---~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDP 167 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQLRS-QDRLYLCELHPTEYNFLLKLPHF---NKKVYVNHTDGVSKLNALLPPPEKRGLIFIDP 167 (283)
T ss_dssp SSSSCCEEECHHHHHHHHSCT-TSEEEEECCSHHHHHHHTTSCCT---TSCEEEECSCHHHHHHHHCSCTTSCEEEEECC
T ss_pred CCCceeEeCCcHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHHhCc---CCcEEEEeCcHHHHHHHhcCCCCCccEEEECC
Confidence 567999999999999999885 57999999999999988887754 3579999999644 11 1345799999876
Q ss_pred cccCcCCHHHHHHHHHH--hcCCCcEEEEE
Q 017428 235 SGEHMPDKSKFVSELAR--VTAPAGTIIIV 262 (371)
Q Consensus 235 ~l~~~~~~~~~l~~~~~--~LkpgG~l~i~ 262 (371)
-.+.-.+..++++.+.+ .+.|+|.+++=
T Consensus 168 PYe~k~~~~~vl~~L~~~~~r~~~Gi~v~W 197 (283)
T 2oo3_A 168 SYERKEEYKEIPYAIKNAYSKFSTGLYCVW 197 (283)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred CCCCCcHHHHHHHHHHHhCccCCCeEEEEE
Confidence 55543466677766665 45799998884
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.82 E-value=0.077 Score=48.86 Aligned_cols=94 Identities=22% Similarity=0.228 Sum_probs=64.2
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcC-CCCCC------CC---CCc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD-ALQQP------FP---DGQ 226 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d-~~~~~------~~---~~~ 226 (371)
++.+||-+|+|. |..+..+++..+++|+++|.++..++.+++ .|.. .++..+ ..+.. .. ...
T Consensus 168 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----lGa~---~~~~~~~~~~~~~~i~~~~~~~~g~g 240 (352)
T 1e3j_A 168 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKN----CGAD---VTLVVDPAKEEESSIIERIRSAIGDL 240 (352)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----TTCS---EEEECCTTTSCHHHHHHHHHHHSSSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH----hCCC---EEEcCcccccHHHHHHHHhccccCCC
Confidence 389999999875 778888888778899999999998887764 3431 222211 01110 11 246
Q ss_pred cceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 227 FDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 227 fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
+|+|+-.-. . ...++.+.+.|+|+|.+++...
T Consensus 241 ~D~vid~~g-----~-~~~~~~~~~~l~~~G~iv~~G~ 272 (352)
T 1e3j_A 241 PNVTIDCSG-----N-EKCITIGINITRTGGTLMLVGM 272 (352)
T ss_dssp CSEEEECSC-----C-HHHHHHHHHHSCTTCEEEECSC
T ss_pred CCEEEECCC-----C-HHHHHHHHHHHhcCCEEEEEec
Confidence 999875432 1 3467888999999999988653
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.025 Score=51.92 Aligned_cols=92 Identities=18% Similarity=0.127 Sum_probs=65.2
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC------CCCccceE
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF------PDGQFDLV 230 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~------~~~~fD~v 230 (371)
++.+||-+|+|. |..+..+++..+++|+++|.+++..+.+++ .|.. .++ |..+..+ ..+.+|+|
T Consensus 166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----lGa~---~~i--~~~~~~~~~~~~~~~g~~d~v 236 (340)
T 3s2e_A 166 PGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARR----LGAE---VAV--NARDTDPAAWLQKEIGGAHGV 236 (340)
T ss_dssp TTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----TTCS---EEE--ETTTSCHHHHHHHHHSSEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH----cCCC---EEE--eCCCcCHHHHHHHhCCCCCEE
Confidence 489999999875 888889998889999999999998887765 3321 122 2222111 12368888
Q ss_pred EccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
+-... ....++.+.+.|+|||.+++...
T Consensus 237 id~~g------~~~~~~~~~~~l~~~G~iv~~G~ 264 (340)
T 3s2e_A 237 LVTAV------SPKAFSQAIGMVRRGGTIALNGL 264 (340)
T ss_dssp EESSC------CHHHHHHHHHHEEEEEEEEECSC
T ss_pred EEeCC------CHHHHHHHHHHhccCCEEEEeCC
Confidence 75421 13578889999999999988653
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=95.78 E-value=0.034 Score=51.41 Aligned_cols=94 Identities=17% Similarity=0.134 Sum_probs=64.2
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC---CCC-----CCCCCcc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDA---LQQ-----PFPDGQF 227 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~-----~~~~~~f 227 (371)
++.+||-+|+|. |..+..+++..++ +|+++|.++..++.+++ .|.. .++..+- .+. ......+
T Consensus 171 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~~~i~~~~~~g~ 243 (356)
T 1pl8_A 171 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE----IGAD---LVLQISKESPQEIARKVEGQLGCKP 243 (356)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCS---EEEECSSCCHHHHHHHHHHHHTSCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCC---EEEcCcccccchHHHHHHHHhCCCC
Confidence 389999999885 7888888887787 99999999988887764 3431 2222110 010 0011468
Q ss_pred ceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 228 DLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 228 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
|+|+-.-. . ...++.+.++|+|||.+++...
T Consensus 244 D~vid~~g-----~-~~~~~~~~~~l~~~G~iv~~G~ 274 (356)
T 1pl8_A 244 EVTIECTG-----A-EASIQAGIYATRSGGTLVLVGL 274 (356)
T ss_dssp SEEEECSC-----C-HHHHHHHHHHSCTTCEEEECSC
T ss_pred CEEEECCC-----C-hHHHHHHHHHhcCCCEEEEEec
Confidence 99875422 1 3467888999999999988653
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.071 Score=49.31 Aligned_cols=102 Identities=16% Similarity=0.119 Sum_probs=69.1
Q ss_pred HHcCCCCCCCCCCCEEEEECCCc-ChHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---
Q 017428 147 RFAGVSEDPTKRPKNVVDVGCGI-GGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--- 221 (371)
Q Consensus 147 ~~~~~~~~~~~~~~~VLDlG~Gt-G~~~~~l~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--- 221 (371)
....+++ +.+||=+|+|. |..+..+++..|++ |+++|.++...+.+++. .. .-+.+...+.....
T Consensus 173 ~~~~~~~-----g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~----~~~~~~~~~~~~~~~~~ 242 (363)
T 3m6i_A 173 QRAGVRL-----GDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CP----EVVTHKVERLSAEESAK 242 (363)
T ss_dssp HHHTCCT-----TCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CT----TCEEEECCSCCHHHHHH
T ss_pred HHcCCCC-----CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-ch----hcccccccccchHHHHH
Confidence 4445554 88999999875 77888888877886 99999999999988874 21 12333221111100
Q ss_pred -----CCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 222 -----FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 222 -----~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
.....+|+|+-.-. ....++.+.++|++||.+++...
T Consensus 243 ~v~~~t~g~g~Dvvid~~g------~~~~~~~~~~~l~~~G~iv~~G~ 284 (363)
T 3m6i_A 243 KIVESFGGIEPAVALECTG------VESSIAAAIWAVKFGGKVFVIGV 284 (363)
T ss_dssp HHHHHTSSCCCSEEEECSC------CHHHHHHHHHHSCTTCEEEECCC
T ss_pred HHHHHhCCCCCCEEEECCC------ChHHHHHHHHHhcCCCEEEEEcc
Confidence 12356999885422 13467889999999999998754
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=95.51 E-value=0.039 Score=50.91 Aligned_cols=98 Identities=16% Similarity=0.115 Sum_probs=67.2
Q ss_pred HHcCCCCCCCCCCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---
Q 017428 147 RFAGVSEDPTKRPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--- 221 (371)
Q Consensus 147 ~~~~~~~~~~~~~~~VLDlG~Gt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--- 221 (371)
....+++ +.+||-+|+|. |..+..+++..++ +|+++|.++..++.+++. |. -.++ |..+..
T Consensus 160 ~~~~~~~-----g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l----Ga---~~vi--~~~~~~~~~ 225 (352)
T 3fpc_A 160 ELANIKL-----GDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEY----GA---TDII--NYKNGDIVE 225 (352)
T ss_dssp HHTTCCT-----TCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHH----TC---CEEE--CGGGSCHHH
T ss_pred HhcCCCC-----CCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CC---ceEE--cCCCcCHHH
Confidence 4555554 89999999876 7788888887787 899999999888887663 32 1122 222211
Q ss_pred -----CCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 222 -----FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 222 -----~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
.....+|+|+-.-.- ...++.+.+.|+|||.+++...
T Consensus 226 ~v~~~t~g~g~D~v~d~~g~------~~~~~~~~~~l~~~G~~v~~G~ 267 (352)
T 3fpc_A 226 QILKATDGKGVDKVVIAGGD------VHTFAQAVKMIKPGSDIGNVNY 267 (352)
T ss_dssp HHHHHTTTCCEEEEEECSSC------TTHHHHHHHHEEEEEEEEECCC
T ss_pred HHHHHcCCCCCCEEEECCCC------hHHHHHHHHHHhcCCEEEEecc
Confidence 122469999853221 2467888999999999998754
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.041 Score=55.68 Aligned_cols=125 Identities=22% Similarity=0.254 Sum_probs=79.4
Q ss_pred CCEEEEECCCcChHHHHHHHHc-------------CCEEEEEeC---CHHHHHHH-----------HHHHHHcCC-----
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-------------GAKCQGITL---SPVQAQRA-----------NALAAARGL----- 206 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-------------~~~v~gvD~---s~~~~~~a-----------~~~~~~~~~----- 206 (371)
..+|+|+|.|+|.....+.+.. ..+++.++. +.+.+..+ ++.+..+..
T Consensus 59 ~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 138 (689)
T 3pvc_A 59 SCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAGC 138 (689)
T ss_dssp EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSEE
T ss_pred ceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCCc
Confidence 5799999999999887766542 146899998 44444432 222322211
Q ss_pred -----CC---CeEEEEcCCCCC-C-CC---CCccceEEccccccCc-CC--HHHHHHHHHHhcCCCcEEEEEeccCCCCC
Q 017428 207 -----AD---KVSFQVGDALQQ-P-FP---DGQFDLVWSMESGEHM-PD--KSKFVSELARVTAPAGTIIIVTWCHRDLA 270 (371)
Q Consensus 207 -----~~---~v~~~~~d~~~~-~-~~---~~~fD~v~~~~~l~~~-~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~ 270 (371)
.. .+++..+|+.+. + +. +..+|+++.-..--.. ++ ...++..+.++++|||.+.-..
T Consensus 139 ~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~------- 211 (689)
T 3pvc_A 139 HRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFSTFT------- 211 (689)
T ss_dssp EEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEESC-------
T ss_pred eEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEecc-------
Confidence 01 355667776542 2 21 4679999875422221 22 1689999999999999866421
Q ss_pred cCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEEE
Q 017428 271 PSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAE 317 (371)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~ 317 (371)
....+++.|.++||.+....
T Consensus 212 ---------------------------~~~~vr~~l~~aGf~~~~~~ 231 (689)
T 3pvc_A 212 ---------------------------AAGFVRRGLQQAGFNVTKVK 231 (689)
T ss_dssp ---------------------------CCHHHHHHHHHTTCEEEEEE
T ss_pred ---------------------------CcHHHHHHHHhCCeEEEecc
Confidence 23467888999999877765
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=95.40 E-value=0.032 Score=51.79 Aligned_cols=94 Identities=21% Similarity=0.086 Sum_probs=65.2
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC------CCCCccceE
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP------FPDGQFDLV 230 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------~~~~~fD~v 230 (371)
++.+||-+|+|. |..+..+++..|++|+++|.++..++.+++ .|. -.++..+..+.. .....+|+|
T Consensus 189 ~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----lGa---~~vi~~~~~~~~~~v~~~~~g~g~D~v 261 (363)
T 3uog_A 189 AGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFA----LGA---DHGINRLEEDWVERVYALTGDRGADHI 261 (363)
T ss_dssp TTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----HTC---SEEEETTTSCHHHHHHHHHTTCCEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHH----cCC---CEEEcCCcccHHHHHHHHhCCCCceEE
Confidence 589999999875 778888888779999999999998888765 233 122222211110 123379999
Q ss_pred EccccccCcCCHHHHHHHHHHhcCCCcEEEEEecc
Q 017428 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
+-.-.- ..+..+.+.|+|||.+++....
T Consensus 262 id~~g~-------~~~~~~~~~l~~~G~iv~~G~~ 289 (363)
T 3uog_A 262 LEIAGG-------AGLGQSLKAVAPDGRISVIGVL 289 (363)
T ss_dssp EEETTS-------SCHHHHHHHEEEEEEEEEECCC
T ss_pred EECCCh-------HHHHHHHHHhhcCCEEEEEecC
Confidence 865431 2467788999999999987643
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=95.34 E-value=0.059 Score=49.17 Aligned_cols=91 Identities=16% Similarity=0.171 Sum_probs=62.0
Q ss_pred CCCEEEEECC--CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-CC-------CCCCcc
Q 017428 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-QP-------FPDGQF 227 (371)
Q Consensus 158 ~~~~VLDlG~--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~-------~~~~~f 227 (371)
++.+||-.|+ |.|..+..++...+++|+++|.+++.++.+++ .+. ... .|..+ .. ...+.+
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~----~g~--~~~---~d~~~~~~~~~~~~~~~~~~~ 215 (333)
T 1v3u_A 145 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQ----IGF--DAA---FNYKTVNSLEEALKKASPDGY 215 (333)
T ss_dssp SSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTC--SEE---EETTSCSCHHHHHHHHCTTCE
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh----cCC--cEE---EecCCHHHHHHHHHHHhCCCC
Confidence 4899999997 45667777777668999999999988877633 232 121 23332 11 112469
Q ss_pred ceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 228 DLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 228 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
|+|+.+..- ..++.+.+.|++||.+++...
T Consensus 216 d~vi~~~g~-------~~~~~~~~~l~~~G~~v~~g~ 245 (333)
T 1v3u_A 216 DCYFDNVGG-------EFLNTVLSQMKDFGKIAICGA 245 (333)
T ss_dssp EEEEESSCH-------HHHHHHHTTEEEEEEEEECCC
T ss_pred eEEEECCCh-------HHHHHHHHHHhcCCEEEEEec
Confidence 998865431 357888999999999988653
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=95.21 E-value=0.072 Score=53.73 Aligned_cols=125 Identities=19% Similarity=0.191 Sum_probs=78.3
Q ss_pred CCEEEEECCCcChHHHHHHHHc-------------CCEEEEEeC---CHHHHHHH-----------HHHHHHcCCC----
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-------------GAKCQGITL---SPVQAQRA-----------NALAAARGLA---- 207 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-------------~~~v~gvD~---s~~~~~~a-----------~~~~~~~~~~---- 207 (371)
.-+|||+|-|+|.......+.. ..++++++. +.+.+..+ ++....+..+
T Consensus 67 ~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (676)
T 3ps9_A 67 LFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGC 146 (676)
T ss_dssp EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEE
T ss_pred ceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCCc
Confidence 5799999999999877665432 135899998 77666532 2333332110
Q ss_pred ---------CCeEEEEcCCCCC-C-CC---CCccceEEccccccCc-CC--HHHHHHHHHHhcCCCcEEEEEeccCCCCC
Q 017428 208 ---------DKVSFQVGDALQQ-P-FP---DGQFDLVWSMESGEHM-PD--KSKFVSELARVTAPAGTIIIVTWCHRDLA 270 (371)
Q Consensus 208 ---------~~v~~~~~d~~~~-~-~~---~~~fD~v~~~~~l~~~-~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~ 270 (371)
-.+.+..+|+.+. + +. ...||+|+.-..-... ++ -..+++.+.++++|||.+....
T Consensus 147 ~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~------- 219 (676)
T 3ps9_A 147 HRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFT------- 219 (676)
T ss_dssp EEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEESC-------
T ss_pred eEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEecc-------
Confidence 1233555665442 1 11 3679999875422111 22 1689999999999999876421
Q ss_pred cCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEEE
Q 017428 271 PSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAE 317 (371)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~ 317 (371)
....+++.|+++||.+....
T Consensus 220 ---------------------------~~~~vr~~L~~aGf~v~~~~ 239 (676)
T 3ps9_A 220 ---------------------------SAGFVRRGLQDAGFTMQKRK 239 (676)
T ss_dssp ---------------------------CCHHHHHHHHHHTCEEEEEE
T ss_pred ---------------------------CcHHHHHHHHhCCeEEEecc
Confidence 22457788999999877654
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.15 E-value=0.036 Score=51.55 Aligned_cols=93 Identities=22% Similarity=0.234 Sum_probs=63.0
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-C-CCCCCccceEEccc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-Q-PFPDGQFDLVWSME 234 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~-~~~~~~fD~v~~~~ 234 (371)
++.+||-+|+|. |..+..+++..+++|+++|.++..++.+++ .|.. .++...-.+ . ... +.+|+|+-.-
T Consensus 194 ~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~~-~g~Dvvid~~ 265 (369)
T 1uuf_A 194 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKA----LGAD---EVVNSRNADEMAAHL-KSFDFILNTV 265 (369)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH----HTCS---EEEETTCHHHHHTTT-TCEEEEEECC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cCCc---EEeccccHHHHHHhh-cCCCEEEECC
Confidence 489999999985 778888888778999999999988888765 2321 122111001 0 111 5699988543
Q ss_pred cccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 235 SGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 235 ~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
.-. ..++.+.+.|+|+|.+++...
T Consensus 266 g~~------~~~~~~~~~l~~~G~iv~~G~ 289 (369)
T 1uuf_A 266 AAP------HNLDDFTTLLKRDGTMTLVGA 289 (369)
T ss_dssp SSC------CCHHHHHTTEEEEEEEEECCC
T ss_pred CCH------HHHHHHHHHhccCCEEEEecc
Confidence 221 236678899999999887643
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.035 Score=50.35 Aligned_cols=88 Identities=16% Similarity=0.228 Sum_probs=60.5
Q ss_pred CCCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccc
Q 017428 157 KRPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES 235 (371)
Q Consensus 157 ~~~~~VLDlG~Gt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~ 235 (371)
.++.+||=+|+|. |..+..+++..+++|++++ +++..+.+++ .| ......|...+ .+.+|+|+-.-.
T Consensus 141 ~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~~----lG----a~~v~~d~~~v---~~g~Dvv~d~~g 208 (315)
T 3goh_A 141 TKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQALAAK----RG----VRHLYREPSQV---TQKYFAIFDAVN 208 (315)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHHHHHH----HT----EEEEESSGGGC---CSCEEEEECC--
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHHHHHH----cC----CCEEEcCHHHh---CCCccEEEECCC
Confidence 3589999999964 7888888887799999999 9888888765 23 22222342222 467999885422
Q ss_pred ccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 236 GEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 236 l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
- ..+..+.++|+|+|.+++..
T Consensus 209 ~-------~~~~~~~~~l~~~G~~v~~g 229 (315)
T 3goh_A 209 S-------QNAAALVPSLKANGHIICIQ 229 (315)
T ss_dssp ------------TTGGGEEEEEEEEEEC
T ss_pred c-------hhHHHHHHHhcCCCEEEEEe
Confidence 1 12356789999999999874
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=95.08 E-value=0.12 Score=48.05 Aligned_cols=70 Identities=17% Similarity=0.097 Sum_probs=54.3
Q ss_pred CEEEEECCCcChHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---C-----CCCccceE
Q 017428 160 KNVVDVGCGIGGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---F-----PDGQFDLV 230 (371)
Q Consensus 160 ~~VLDlG~GtG~~~~~l~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~-----~~~~fD~v 230 (371)
.+|+|+-||.|.++..+... |.+ |.++|+++..++..+.++ ++..++.+|+.+.. + ....+|+|
T Consensus 3 ~~vidLFsG~GGlslG~~~a-G~~~v~avE~d~~a~~t~~~N~------~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i 75 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARA-GFDVKMAVEIDQHAINTHAINF------PRSLHVQEDVSLLNAEIIKGFFKNDMPIDGI 75 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHH-TCEEEEEECSCHHHHHHHHHHC------TTSEEECCCGGGCCHHHHHHHHCSCCCCCEE
T ss_pred CeEEEEccCcCHHHHHHHHC-CCcEEEEEeCCHHHHHHHHHhC------CCCceEecChhhcCHHHHHhhcccCCCeeEE
Confidence 68999999999999999887 655 669999999888777653 35778889988763 1 24679999
Q ss_pred Eccccc
Q 017428 231 WSMESG 236 (371)
Q Consensus 231 ~~~~~l 236 (371)
+..--.
T Consensus 76 ~ggpPC 81 (376)
T 3g7u_A 76 IGGPPC 81 (376)
T ss_dssp EECCCC
T ss_pred EecCCC
Confidence 875443
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=95.03 E-value=0.13 Score=47.10 Aligned_cols=92 Identities=15% Similarity=0.146 Sum_probs=63.5
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC------CCccceE
Q 017428 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP------DGQFDLV 230 (371)
Q Consensus 158 ~~~~VLDlG~G-tG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~------~~~fD~v 230 (371)
++.+||-+|+| .|..+..+++..+++|+++|.++..++.+++ .|.. . ..|..+..+. .+.+|+|
T Consensus 164 ~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----lGa~---~--~~d~~~~~~~~~~~~~~~~~d~v 234 (339)
T 1rjw_A 164 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE----LGAD---L--VVNPLKEDAAKFMKEKVGGVHAA 234 (339)
T ss_dssp TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----TTCS---E--EECTTTSCHHHHHHHHHSSEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----CCCC---E--EecCCCccHHHHHHHHhCCCCEE
Confidence 38899999986 3777778887778999999999998887754 3321 1 1243322110 0468988
Q ss_pred EccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
+-... . ...++.+.+.|+++|.+++...
T Consensus 235 id~~g-----~-~~~~~~~~~~l~~~G~~v~~g~ 262 (339)
T 1rjw_A 235 VVTAV-----S-KPAFQSAYNSIRRGGACVLVGL 262 (339)
T ss_dssp EESSC-----C-HHHHHHHHHHEEEEEEEEECCC
T ss_pred EECCC-----C-HHHHHHHHHHhhcCCEEEEecc
Confidence 75432 1 3467888999999999987653
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=95.02 E-value=0.13 Score=47.61 Aligned_cols=92 Identities=16% Similarity=0.142 Sum_probs=63.8
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC--CC-------CCCCc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ--QP-------FPDGQ 226 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~-------~~~~~ 226 (371)
++.+||-+|+|. |..+..+++..++ +|+++|.++..++.+++ .|.. .++ |..+ .. ...+.
T Consensus 191 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~---~vi--~~~~~~~~~~~~i~~~t~gg 261 (373)
T 1p0f_A 191 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE----LGAT---ECL--NPKDYDKPIYEVICEKTNGG 261 (373)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----TTCS---EEE--CGGGCSSCHHHHHHHHTTSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCc---EEE--ecccccchHHHHHHHHhCCC
Confidence 489999999875 7788888887787 89999999988887764 3431 122 2221 11 11247
Q ss_pred cceEEccccccCcCCHHHHHHHHHHhcCCC-cEEEEEec
Q 017428 227 FDLVWSMESGEHMPDKSKFVSELARVTAPA-GTIIIVTW 264 (371)
Q Consensus 227 fD~v~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~ 264 (371)
+|+|+-.-. . ...++.+.+.|+++ |.+++...
T Consensus 262 ~Dvvid~~g-----~-~~~~~~~~~~l~~~~G~iv~~G~ 294 (373)
T 1p0f_A 262 VDYAVECAG-----R-IETMMNALQSTYCGSGVTVVLGL 294 (373)
T ss_dssp BSEEEECSC-----C-HHHHHHHHHTBCTTTCEEEECCC
T ss_pred CCEEEECCC-----C-HHHHHHHHHHHhcCCCEEEEEcc
Confidence 999885422 1 35678899999999 99987653
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.97 E-value=0.12 Score=47.91 Aligned_cols=92 Identities=17% Similarity=0.319 Sum_probs=63.7
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC--CC-------CCCCc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ--QP-------FPDGQ 226 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~-------~~~~~ 226 (371)
++.+||-+|+|. |..+..+++..++ +|+++|.++..++.+++ .|.. .++ |..+ .. ...+.
T Consensus 192 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~---~vi--~~~~~~~~~~~~~~~~~~~g 262 (374)
T 1cdo_A 192 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV----FGAT---DFV--NPNDHSEPISQVLSKMTNGG 262 (374)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCC---EEE--CGGGCSSCHHHHHHHHHTSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----hCCc---eEE--eccccchhHHHHHHHHhCCC
Confidence 488999999875 7788888887787 89999999988887764 3431 122 2221 11 11246
Q ss_pred cceEEccccccCcCCHHHHHHHHHHhcCCC-cEEEEEec
Q 017428 227 FDLVWSMESGEHMPDKSKFVSELARVTAPA-GTIIIVTW 264 (371)
Q Consensus 227 fD~v~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~ 264 (371)
+|+|+-.-. . ...++.+.+.|++| |.+++...
T Consensus 263 ~D~vid~~g-----~-~~~~~~~~~~l~~~~G~iv~~G~ 295 (374)
T 1cdo_A 263 VDFSLECVG-----N-VGVMRNALESCLKGWGVSVLVGW 295 (374)
T ss_dssp BSEEEECSC-----C-HHHHHHHHHTBCTTTCEEEECSC
T ss_pred CCEEEECCC-----C-HHHHHHHHHHhhcCCcEEEEEcC
Confidence 899875422 1 35678899999999 99988653
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=94.90 E-value=0.12 Score=47.85 Aligned_cols=92 Identities=18% Similarity=0.224 Sum_probs=63.8
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC--CC-------CCCCc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ--QP-------FPDGQ 226 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~-------~~~~~ 226 (371)
++.+||-+|+|. |..+..+++..++ +|+++|.++..++.+++ .|.. .++ |..+ .. ...+.
T Consensus 190 ~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~---~vi--~~~~~~~~~~~~v~~~~~~g 260 (373)
T 2fzw_A 190 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKE----FGAT---ECI--NPQDFSKPIQEVLIEMTDGG 260 (373)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----HTCS---EEE--CGGGCSSCHHHHHHHHTTSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCc---eEe--ccccccccHHHHHHHHhCCC
Confidence 489999999875 7778888887787 89999999998888764 2321 122 2221 01 11247
Q ss_pred cceEEccccccCcCCHHHHHHHHHHhcCCC-cEEEEEec
Q 017428 227 FDLVWSMESGEHMPDKSKFVSELARVTAPA-GTIIIVTW 264 (371)
Q Consensus 227 fD~v~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~ 264 (371)
+|+|+-.-. . ...++.+.+.|+++ |.+++...
T Consensus 261 ~D~vid~~g-----~-~~~~~~~~~~l~~~~G~iv~~G~ 293 (373)
T 2fzw_A 261 VDYSFECIG-----N-VKVMRAALEACHKGWGVSVVVGV 293 (373)
T ss_dssp BSEEEECSC-----C-HHHHHHHHHTBCTTTCEEEECSC
T ss_pred CCEEEECCC-----c-HHHHHHHHHhhccCCcEEEEEec
Confidence 999875422 1 35678899999999 99988653
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=94.88 E-value=0.089 Score=49.64 Aligned_cols=63 Identities=19% Similarity=0.209 Sum_probs=50.1
Q ss_pred CCCCEEEEECCCcChHHHHHH-HHcC--CEEEEEeCCHHHHHHHHHHHHH--c-CCCCCeEEEEcCCCC
Q 017428 157 KRPKNVVDVGCGIGGSSRYLA-KKFG--AKCQGITLSPVQAQRANALAAA--R-GLADKVSFQVGDALQ 219 (371)
Q Consensus 157 ~~~~~VLDlG~GtG~~~~~l~-~~~~--~~v~gvD~s~~~~~~a~~~~~~--~-~~~~~v~~~~~d~~~ 219 (371)
.++..|+|||++.|..+..++ +..+ .+|+++|++|...+..+++++. + +.++++.++..-+-+
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al~~ 293 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAGE 293 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEECS
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEEEC
Confidence 458999999999999999988 4443 6999999999999999999987 3 232577777655543
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.85 E-value=0.22 Score=46.77 Aligned_cols=94 Identities=22% Similarity=0.150 Sum_probs=62.4
Q ss_pred CCCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------CCCCc
Q 017428 157 KRPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------FPDGQ 226 (371)
Q Consensus 157 ~~~~~VLDlG~Gt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~~ 226 (371)
.++.+||=+|+|. |..+..+++..++ +|+++|.++..++.+++. |. -.++ |..+.. .....
T Consensus 212 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~l----Ga---~~vi--~~~~~~~~~~i~~~t~g~g 282 (404)
T 3ip1_A 212 RPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKEL----GA---DHVI--DPTKENFVEAVLDYTNGLG 282 (404)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH----TC---SEEE--CTTTSCHHHHHHHHTTTCC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CC---CEEE--cCCCCCHHHHHHHHhCCCC
Confidence 3589999999875 7788888887788 999999999988888653 32 1122 222211 12236
Q ss_pred cceEEccccccCcCCHHHHHHHHHHhc----CCCcEEEEEec
Q 017428 227 FDLVWSMESGEHMPDKSKFVSELARVT----APAGTIIIVTW 264 (371)
Q Consensus 227 fD~v~~~~~l~~~~~~~~~l~~~~~~L----kpgG~l~i~~~ 264 (371)
+|+|+-.- ......+..+.+.| ++||.+++...
T Consensus 283 ~D~vid~~-----g~~~~~~~~~~~~l~~~~~~~G~iv~~G~ 319 (404)
T 3ip1_A 283 AKLFLEAT-----GVPQLVWPQIEEVIWRARGINATVAIVAR 319 (404)
T ss_dssp CSEEEECS-----SCHHHHHHHHHHHHHHCSCCCCEEEECSC
T ss_pred CCEEEECC-----CCcHHHHHHHHHHHHhccCCCcEEEEeCC
Confidence 99887432 23333445555555 99999998754
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=94.80 E-value=0.17 Score=46.93 Aligned_cols=92 Identities=18% Similarity=0.234 Sum_probs=63.5
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC--CC-------CCCCc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ--QP-------FPDGQ 226 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~-------~~~~~ 226 (371)
++.+||-+|+|. |..+..+++..++ +|+++|.+++.++.+++ .|.. .++ |..+ .. ...+.
T Consensus 191 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~---~vi--~~~~~~~~~~~~~~~~~~~g 261 (374)
T 2jhf_A 191 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE----VGAT---ECV--NPQDYKKPIQEVLTEMSNGG 261 (374)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCS---EEE--CGGGCSSCHHHHHHHHTTSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCc---eEe--cccccchhHHHHHHHHhCCC
Confidence 489999999875 7778888887787 89999999988887764 3431 122 2221 10 11247
Q ss_pred cceEEccccccCcCCHHHHHHHHHHhcCCC-cEEEEEec
Q 017428 227 FDLVWSMESGEHMPDKSKFVSELARVTAPA-GTIIIVTW 264 (371)
Q Consensus 227 fD~v~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~ 264 (371)
+|+|+-.-. . ...++.+.+.|+++ |.+++...
T Consensus 262 ~D~vid~~g-----~-~~~~~~~~~~l~~~~G~iv~~G~ 294 (374)
T 2jhf_A 262 VDFSFEVIG-----R-LDTMVTALSCCQEAYGVSVIVGV 294 (374)
T ss_dssp BSEEEECSC-----C-HHHHHHHHHHBCTTTCEEEECSC
T ss_pred CcEEEECCC-----C-HHHHHHHHHHhhcCCcEEEEecc
Confidence 999875422 1 35678899999999 99987653
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=94.75 E-value=0.095 Score=47.97 Aligned_cols=91 Identities=20% Similarity=0.214 Sum_probs=61.7
Q ss_pred CCCEEEEECCC--cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------CCCCcc
Q 017428 158 RPKNVVDVGCG--IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------FPDGQF 227 (371)
Q Consensus 158 ~~~~VLDlG~G--tG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~~f 227 (371)
++.+||-+|+| .|..+..+++..|++|+++|.++..++.+++. |. .. .+ |..+.. .....+
T Consensus 144 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~l----ga--~~-~~--~~~~~~~~~~~~~~~~~~g~ 214 (340)
T 3gms_A 144 RNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRL----GA--AY-VI--DTSTAPLYETVMELTNGIGA 214 (340)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHH----TC--SE-EE--ETTTSCHHHHHHHHTTTSCE
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhC----CC--cE-EE--eCCcccHHHHHHHHhCCCCC
Confidence 48999999987 57788888887799999999999888877652 32 11 22 222211 123479
Q ss_pred ceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 228 DLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 228 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
|+|+-+-.- .. +.+..+.|++||.+++...
T Consensus 215 Dvvid~~g~------~~-~~~~~~~l~~~G~iv~~G~ 244 (340)
T 3gms_A 215 DAAIDSIGG------PD-GNELAFSLRPNGHFLTIGL 244 (340)
T ss_dssp EEEEESSCH------HH-HHHHHHTEEEEEEEEECCC
T ss_pred cEEEECCCC------hh-HHHHHHHhcCCCEEEEEee
Confidence 998864321 12 2345589999999998754
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=94.74 E-value=0.023 Score=52.39 Aligned_cols=70 Identities=16% Similarity=0.201 Sum_probs=53.9
Q ss_pred CCEEEEECCCcChHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---CCCCccceEEc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFG---AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---FPDGQFDLVWS 232 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~v~~ 232 (371)
..+|+|+-||.|.+...+... | ..|.++|+++..++..+.++ ++..++.+|+.+.. ++...+|+|+.
T Consensus 2 ~~~v~dLFaG~Gg~~~g~~~~-G~~~~~v~~~E~d~~a~~~~~~N~------~~~~~~~~Di~~~~~~~~~~~~~D~l~~ 74 (343)
T 1g55_A 2 PLRVLELYSGVGGMHHALRES-CIPAQVVAAIDVNTVANEVYKYNF------PHTQLLAKTIEGITLEEFDRLSFDMILM 74 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHH-TCSEEEEEEECCCHHHHHHHHHHC------TTSCEECSCGGGCCHHHHHHHCCSEEEE
T ss_pred CCeEEEeCcCccHHHHHHHHC-CCCceEEEEEeCCHHHHHHHHHhc------cccccccCCHHHccHhHcCcCCcCEEEE
Confidence 468999999999999999886 4 36899999999998888765 24457788988763 12226899987
Q ss_pred ccc
Q 017428 233 MES 235 (371)
Q Consensus 233 ~~~ 235 (371)
.--
T Consensus 75 gpP 77 (343)
T 1g55_A 75 SPP 77 (343)
T ss_dssp CCC
T ss_pred cCC
Confidence 543
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=94.73 E-value=0.22 Score=46.35 Aligned_cols=52 Identities=15% Similarity=0.306 Sum_probs=38.9
Q ss_pred CCEEEEECCCcChHHHHHHHHc--------CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEE
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF--------GAKCQGITLSPVQAQRANALAAARGLADKVSFQ 213 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~--------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~ 213 (371)
+..|+|+|.|+|.++..+.+.+ ..+|+.||+|+...+.-++++... .++.+.
T Consensus 81 ~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~---~~v~W~ 140 (387)
T 1zkd_A 81 TLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGI---RNIHWH 140 (387)
T ss_dssp SEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTC---SSEEEE
T ss_pred CcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcCC---CCeEEe
Confidence 5689999999999999887643 248999999998887666655332 146554
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=94.72 E-value=0.077 Score=49.40 Aligned_cols=92 Identities=24% Similarity=0.315 Sum_probs=64.4
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC--CCC-------CCCCc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL--QQP-------FPDGQ 226 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~--~~~-------~~~~~ 226 (371)
++.+||=+|+|. |..+..+++..++ +|+++|.++..++.+++ .|.. .++ |.. +.. ...+.
T Consensus 193 ~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~----lGa~---~vi--~~~~~~~~~~~~i~~~~~gg 263 (378)
T 3uko_A 193 PGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKK----FGVN---EFV--NPKDHDKPIQEVIVDLTDGG 263 (378)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHT----TTCC---EEE--CGGGCSSCHHHHHHHHTTSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCc---EEE--ccccCchhHHHHHHHhcCCC
Confidence 488999999874 7788888887787 89999999988887764 3431 122 222 111 12347
Q ss_pred cceEEccccccCcCCHHHHHHHHHHhcCCC-cEEEEEec
Q 017428 227 FDLVWSMESGEHMPDKSKFVSELARVTAPA-GTIIIVTW 264 (371)
Q Consensus 227 fD~v~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~ 264 (371)
+|+|+-.-. . ...++.+.+.|++| |.+++...
T Consensus 264 ~D~vid~~g-----~-~~~~~~~~~~l~~g~G~iv~~G~ 296 (378)
T 3uko_A 264 VDYSFECIG-----N-VSVMRAALECCHKGWGTSVIVGV 296 (378)
T ss_dssp BSEEEECSC-----C-HHHHHHHHHTBCTTTCEEEECSC
T ss_pred CCEEEECCC-----C-HHHHHHHHHHhhccCCEEEEEcc
Confidence 999885422 2 35688899999997 99988754
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=94.72 E-value=0.15 Score=47.26 Aligned_cols=92 Identities=18% Similarity=0.210 Sum_probs=63.6
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC--CC-------CCCCc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ--QP-------FPDGQ 226 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~-------~~~~~ 226 (371)
++.+||-+|+|. |..+..+++..++ +|+++|.+++.++.+++ .|.. .++ |..+ .. ...+.
T Consensus 195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~---~vi--~~~~~~~~~~~~v~~~~~~g 265 (376)
T 1e3i_A 195 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA----LGAT---DCL--NPRELDKPVQDVITELTAGG 265 (376)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCS---EEE--CGGGCSSCHHHHHHHHHTSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCc---EEE--ccccccchHHHHHHHHhCCC
Confidence 489999999874 7788888887787 89999999988887764 3431 112 2221 11 11246
Q ss_pred cceEEccccccCcCCHHHHHHHHHHhcCCC-cEEEEEec
Q 017428 227 FDLVWSMESGEHMPDKSKFVSELARVTAPA-GTIIIVTW 264 (371)
Q Consensus 227 fD~v~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~ 264 (371)
+|+|+-.-. . ...++.+.+.|++| |.+++...
T Consensus 266 ~Dvvid~~G-----~-~~~~~~~~~~l~~~~G~iv~~G~ 298 (376)
T 1e3i_A 266 VDYSLDCAG-----T-AQTLKAAVDCTVLGWGSCTVVGA 298 (376)
T ss_dssp BSEEEESSC-----C-HHHHHHHHHTBCTTTCEEEECCC
T ss_pred ccEEEECCC-----C-HHHHHHHHHHhhcCCCEEEEECC
Confidence 999875422 1 35678899999999 99987653
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=94.69 E-value=0.068 Score=48.63 Aligned_cols=59 Identities=20% Similarity=0.244 Sum_probs=45.7
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCH---HHHHHHHHHHHHcC
Q 017428 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSP---VQAQRANALAAARG 205 (371)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~---~~~~~a~~~~~~~~ 205 (371)
.+++.++.... . ++..|||.-||+|..+....+. +.+++|+|+++ ..++.+++++...+
T Consensus 230 ~l~~~~i~~~~-~-----~~~~vlDpF~GsGtt~~aa~~~-~r~~ig~e~~~~~~~~~~~~~~Rl~~~~ 291 (319)
T 1eg2_A 230 AVIERLVRALS-H-----PGSTVLDFFAGSGVTARVAIQE-GRNSICTDAAPVFKEYYQKQLTFLQDDG 291 (319)
T ss_dssp HHHHHHHHHHS-C-----TTCEEEETTCTTCHHHHHHHHH-TCEEEEEESSTHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHhC-C-----CCCEEEecCCCCCHHHHHHHHc-CCcEEEEECCccHHHHHHHHHHHHHHcc
Confidence 35566665543 2 4889999999999999888776 88999999999 99999999876543
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=94.68 E-value=0.073 Score=48.61 Aligned_cols=92 Identities=14% Similarity=0.139 Sum_probs=63.3
Q ss_pred CCCEEEEECC--CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-------CCCCccc
Q 017428 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-------FPDGQFD 228 (371)
Q Consensus 158 ~~~~VLDlG~--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-------~~~~~fD 228 (371)
++.+||-+|+ |.|..+..+++..+++|++++.+++.++.+.+. .|. . ..+ |..+.. ...+.+|
T Consensus 149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~---~g~--~-~~~--~~~~~~~~~~~~~~~~~~~d 220 (336)
T 4b7c_A 149 NGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEE---LGF--D-GAI--DYKNEDLAAGLKRECPKGID 220 (336)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT---TCC--S-EEE--ETTTSCHHHHHHHHCTTCEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---cCC--C-EEE--ECCCHHHHHHHHHhcCCCce
Confidence 4899999998 457788888887789999999999887776322 232 1 112 222211 1135699
Q ss_pred eEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 229 LVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 229 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
+|+-+-. ...+..+.+.|++||.+++...
T Consensus 221 ~vi~~~g-------~~~~~~~~~~l~~~G~iv~~G~ 249 (336)
T 4b7c_A 221 VFFDNVG-------GEILDTVLTRIAFKARIVLCGA 249 (336)
T ss_dssp EEEESSC-------HHHHHHHHTTEEEEEEEEECCC
T ss_pred EEEECCC-------cchHHHHHHHHhhCCEEEEEee
Confidence 8876432 1468889999999999998653
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=94.60 E-value=0.048 Score=49.76 Aligned_cols=58 Identities=14% Similarity=0.084 Sum_probs=46.4
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARG 205 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~ 205 (371)
+++.++.... . ++..|||.-||+|..+....+. +.+++|+|+++...+.+++++...+
T Consensus 241 l~~~~i~~~~-~-----~~~~VlDpF~GsGtt~~aa~~~-gr~~ig~e~~~~~~~~~~~r~~~~~ 298 (323)
T 1boo_A 241 LPEFFIRMLT-E-----PDDLVVDIFGGSNTTGLVAERE-SRKWISFEMKPEYVAASAFRFLDNN 298 (323)
T ss_dssp HHHHHHHHHC-C-----TTCEEEETTCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHGGGSCSC
T ss_pred HHHHHHHHhC-C-----CCCEEEECCCCCCHHHHHHHHc-CCCEEEEeCCHHHHHHHHHHHHhcc
Confidence 5555555443 2 4889999999999999887765 8999999999999999998875544
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=94.60 E-value=0.85 Score=35.56 Aligned_cols=89 Identities=18% Similarity=0.127 Sum_probs=57.6
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----CCCCccceEE
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----FPDGQFDLVW 231 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~v~ 231 (371)
..+|+=+|+| .++..+++.+ +..|+++|.+++.++.+++ ..+.++.+|..+.. ..-..+|+|+
T Consensus 7 ~~~viIiG~G--~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~--------~g~~~i~gd~~~~~~l~~a~i~~ad~vi 76 (140)
T 3fwz_A 7 CNHALLVGYG--RVGSLLGEKLLASDIPLVVIETSRTRVDELRE--------RGVRAVLGNAANEEIMQLAHLECAKWLI 76 (140)
T ss_dssp CSCEEEECCS--HHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH--------TTCEEEESCTTSHHHHHHTTGGGCSEEE
T ss_pred CCCEEEECcC--HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH--------cCCCEEECCCCCHHHHHhcCcccCCEEE
Confidence 4679999885 4444444443 7899999999998877654 24678899987642 1224678877
Q ss_pred ccccccCcCCH--HHHHHHHHHhcCCCcEEEEE
Q 017428 232 SMESGEHMPDK--SKFVSELARVTAPAGTIIIV 262 (371)
Q Consensus 232 ~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~ 262 (371)
+.. ++. ...+-...+.+.|+..++..
T Consensus 77 ~~~-----~~~~~n~~~~~~a~~~~~~~~iiar 104 (140)
T 3fwz_A 77 LTI-----PNGYEAGEIVASARAKNPDIEIIAR 104 (140)
T ss_dssp ECC-----SCHHHHHHHHHHHHHHCSSSEEEEE
T ss_pred EEC-----CChHHHHHHHHHHHHHCCCCeEEEE
Confidence 542 332 22233455667788876654
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=94.55 E-value=0.13 Score=47.18 Aligned_cols=92 Identities=23% Similarity=0.325 Sum_probs=63.8
Q ss_pred CCCEEEEECCC--cChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-------CCC-Cc
Q 017428 158 RPKNVVDVGCG--IGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-------FPD-GQ 226 (371)
Q Consensus 158 ~~~~VLDlG~G--tG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-------~~~-~~ 226 (371)
++.+||-+|+| .|..+..+++.. +++|+++|.++..++.+++. |. .. ++ |..+.. ... +.
T Consensus 170 ~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~----g~--~~-~~--~~~~~~~~~~~~~~~~~~~ 240 (347)
T 1jvb_A 170 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA----GA--DY-VI--NASMQDPLAEIRRITESKG 240 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH----TC--SE-EE--ETTTSCHHHHHHHHTTTSC
T ss_pred CCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----CC--CE-Ee--cCCCccHHHHHHHHhcCCC
Confidence 48999999987 566777888887 89999999999888877542 32 11 22 222211 112 47
Q ss_pred cceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 227 FDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 227 fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
+|+|+.+..- ...++.+.+.|+|+|.+++...
T Consensus 241 ~d~vi~~~g~------~~~~~~~~~~l~~~G~iv~~g~ 272 (347)
T 1jvb_A 241 VDAVIDLNNS------EKTLSVYPKALAKQGKYVMVGL 272 (347)
T ss_dssp EEEEEESCCC------HHHHTTGGGGEEEEEEEEECCS
T ss_pred ceEEEECCCC------HHHHHHHHHHHhcCCEEEEECC
Confidence 9998855321 3467888999999999988653
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.51 E-value=0.08 Score=48.64 Aligned_cols=92 Identities=22% Similarity=0.223 Sum_probs=62.5
Q ss_pred CCCEEEEECC--CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-CC-------CCCCcc
Q 017428 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-QP-------FPDGQF 227 (371)
Q Consensus 158 ~~~~VLDlG~--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~-------~~~~~f 227 (371)
++.+||-+|+ |.|..+..+++..+++|+++|.++...+.+++ .+. .. . .|..+ .. ...+.+
T Consensus 169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~----~g~--~~-~--~d~~~~~~~~~~~~~~~~~~~ 239 (347)
T 2hcy_A 169 AGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRS----IGG--EV-F--IDFTKEKDIVGAVLKATDGGA 239 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHH----TTC--CE-E--EETTTCSCHHHHHHHHHTSCE
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHH----cCC--ce-E--EecCccHhHHHHHHHHhCCCC
Confidence 4899999998 45777777777668999999999887776654 332 11 1 24331 11 011268
Q ss_pred ceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 228 DLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 228 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
|+|+.+.. ....++.+.+.|+++|++++...
T Consensus 240 D~vi~~~g------~~~~~~~~~~~l~~~G~iv~~g~ 270 (347)
T 2hcy_A 240 HGVINVSV------SEAAIEASTRYVRANGTTVLVGM 270 (347)
T ss_dssp EEEEECSS------CHHHHHHHTTSEEEEEEEEECCC
T ss_pred CEEEECCC------cHHHHHHHHHHHhcCCEEEEEeC
Confidence 98886532 13568889999999999988653
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=94.41 E-value=0.021 Score=52.53 Aligned_cols=91 Identities=16% Similarity=0.141 Sum_probs=64.2
Q ss_pred CCEEEEECCCc-ChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-C----CCC-CCccce
Q 017428 159 PKNVVDVGCGI-GGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-Q----PFP-DGQFDL 229 (371)
Q Consensus 159 ~~~VLDlG~Gt-G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~----~~~-~~~fD~ 229 (371)
+.+||-+|+|. |..+..+++.. +++|+++|.+++.++.+++ .|.. .++ |..+ . .+. ...+|+
T Consensus 171 g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~----lGa~---~vi--~~~~~~~~~~~~~~g~g~D~ 241 (344)
T 2h6e_A 171 EPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALE----LGAD---YVS--EMKDAESLINKLTDGLGASI 241 (344)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHH----HTCS---EEE--CHHHHHHHHHHHHTTCCEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHH----hCCC---EEe--ccccchHHHHHhhcCCCccE
Confidence 88999999975 77888999988 9999999999998888765 2321 111 2111 0 011 236999
Q ss_pred EEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 230 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
|+-.-. . ...++.+.+.|+|||.+++...
T Consensus 242 vid~~g-----~-~~~~~~~~~~l~~~G~iv~~g~ 270 (344)
T 2h6e_A 242 AIDLVG-----T-EETTYNLGKLLAQEGAIILVGM 270 (344)
T ss_dssp EEESSC-----C-HHHHHHHHHHEEEEEEEEECCC
T ss_pred EEECCC-----C-hHHHHHHHHHhhcCCEEEEeCC
Confidence 885432 1 3467889999999999988653
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=94.39 E-value=0.13 Score=47.31 Aligned_cols=92 Identities=18% Similarity=0.181 Sum_probs=63.5
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------CCCCcc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------FPDGQF 227 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~~f 227 (371)
++.+||-+|+|. |..+..+++..++ +|+++|.+++.++.+++ .|. -.++ |..+.. .....+
T Consensus 167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~----~Ga---~~~~--~~~~~~~~~~v~~~~~g~g~ 237 (348)
T 2d8a_A 167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKK----VGA---DYVI--NPFEEDVVKEVMDITDGNGV 237 (348)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHH----HTC---SEEE--CTTTSCHHHHHHHHTTTSCE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCC---CEEE--CCCCcCHHHHHHHHcCCCCC
Confidence 488999999864 7777888887788 89999999988887764 232 1122 322211 112369
Q ss_pred ceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 228 DLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 228 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
|+|+-.-. . ...++.+.+.|+++|.++....
T Consensus 238 D~vid~~g-----~-~~~~~~~~~~l~~~G~iv~~g~ 268 (348)
T 2d8a_A 238 DVFLEFSG-----A-PKALEQGLQAVTPAGRVSLLGL 268 (348)
T ss_dssp EEEEECSC-----C-HHHHHHHHHHEEEEEEEEECCC
T ss_pred CEEEECCC-----C-HHHHHHHHHHHhcCCEEEEEcc
Confidence 99885432 1 3567888999999999888653
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=94.38 E-value=0.13 Score=46.67 Aligned_cols=94 Identities=19% Similarity=0.124 Sum_probs=63.9
Q ss_pred CCCEEEEEC-C-CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC------CCCCccce
Q 017428 158 RPKNVVDVG-C-GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP------FPDGQFDL 229 (371)
Q Consensus 158 ~~~~VLDlG-~-GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------~~~~~fD~ 229 (371)
++.+||-+| + |.|..+..+++..+++|++++.+++.++.+++ .|. -..+..+-.+.. .....+|+
T Consensus 140 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----~Ga---~~~~~~~~~~~~~~~~~~~~~~g~Dv 212 (325)
T 3jyn_A 140 PGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKA----LGA---WETIDYSHEDVAKRVLELTDGKKCPV 212 (325)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH----HTC---SEEEETTTSCHHHHHHHHTTTCCEEE
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cCC---CEEEeCCCccHHHHHHHHhCCCCceE
Confidence 489999998 3 45778888888779999999999998888765 232 122221111110 12346999
Q ss_pred EEccccccCcCCHHHHHHHHHHhcCCCcEEEEEecc
Q 017428 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 230 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
|+-+-.- ..+..+.+.|++||.+++....
T Consensus 213 vid~~g~-------~~~~~~~~~l~~~G~iv~~g~~ 241 (325)
T 3jyn_A 213 VYDGVGQ-------DTWLTSLDSVAPRGLVVSFGNA 241 (325)
T ss_dssp EEESSCG-------GGHHHHHTTEEEEEEEEECCCT
T ss_pred EEECCCh-------HHHHHHHHHhcCCCEEEEEecC
Confidence 8865332 3567888999999999987643
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=94.37 E-value=0.13 Score=47.01 Aligned_cols=92 Identities=14% Similarity=0.097 Sum_probs=62.8
Q ss_pred CCCEEEEECC--CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C-------CCCCcc
Q 017428 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P-------FPDGQF 227 (371)
Q Consensus 158 ~~~~VLDlG~--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-------~~~~~f 227 (371)
++.+||-+|+ |.|..+..+++..+++|++++.++..++.+++. .|. .. .+ |..+. . ...+.+
T Consensus 155 ~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~---~g~--~~-~~--d~~~~~~~~~~~~~~~~~~~ 226 (345)
T 2j3h_A 155 EGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTK---FGF--DD-AF--NYKEESDLTAALKRCFPNGI 226 (345)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT---SCC--SE-EE--ETTSCSCSHHHHHHHCTTCE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---cCC--ce-EE--ecCCHHHHHHHHHHHhCCCC
Confidence 4899999997 457777778777789999999999887776532 232 11 12 33221 1 112468
Q ss_pred ceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 228 DLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 228 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
|+|+.+.. . ..++.+.+.|++||.+++...
T Consensus 227 d~vi~~~g-----~--~~~~~~~~~l~~~G~~v~~G~ 256 (345)
T 2j3h_A 227 DIYFENVG-----G--KMLDAVLVNMNMHGRIAVCGM 256 (345)
T ss_dssp EEEEESSC-----H--HHHHHHHTTEEEEEEEEECCC
T ss_pred cEEEECCC-----H--HHHHHHHHHHhcCCEEEEEcc
Confidence 98876532 1 368889999999999988643
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=94.31 E-value=0.093 Score=48.13 Aligned_cols=92 Identities=20% Similarity=0.255 Sum_probs=63.0
Q ss_pred CCCEEEEECC--CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC------CCCCccce
Q 017428 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP------FPDGQFDL 229 (371)
Q Consensus 158 ~~~~VLDlG~--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------~~~~~fD~ 229 (371)
++.+||-+|+ |.|..+..+++..|++|++++.+++..+.+++. |. -.++..+ .+.. .....+|+
T Consensus 159 ~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----ga---~~v~~~~-~~~~~~v~~~~~~~g~Dv 230 (342)
T 4eye_A 159 AGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSV----GA---DIVLPLE-EGWAKAVREATGGAGVDM 230 (342)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH----TC---SEEEESS-TTHHHHHHHHTTTSCEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc----CC---cEEecCc-hhHHHHHHHHhCCCCceE
Confidence 4899999997 457788888887799999999999888777652 32 1223222 2211 12336999
Q ss_pred EEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 230 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
|+-+-.- ..+..+.+.|++||.+++...
T Consensus 231 vid~~g~-------~~~~~~~~~l~~~G~iv~~G~ 258 (342)
T 4eye_A 231 VVDPIGG-------PAFDDAVRTLASEGRLLVVGF 258 (342)
T ss_dssp EEESCC---------CHHHHHHTEEEEEEEEEC--
T ss_pred EEECCch-------hHHHHHHHhhcCCCEEEEEEc
Confidence 9865432 246788899999999998653
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=94.27 E-value=0.097 Score=47.76 Aligned_cols=93 Identities=12% Similarity=0.018 Sum_probs=63.3
Q ss_pred CCCEEEEECC--CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC------CCCCccce
Q 017428 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP------FPDGQFDL 229 (371)
Q Consensus 158 ~~~~VLDlG~--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------~~~~~fD~ 229 (371)
++.+||-+|+ |.|..+..+++..+++|++++.++..++.+++ .|. -.++..+-.+.. .....+|+
T Consensus 148 ~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----~ga---~~~~~~~~~~~~~~~~~~~~~~g~D~ 220 (334)
T 3qwb_A 148 KGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKE----YGA---EYLINASKEDILRQVLKFTNGKGVDA 220 (334)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTC---SEEEETTTSCHHHHHHHHTTTSCEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cCC---cEEEeCCCchHHHHHHHHhCCCCceE
Confidence 4899999994 45777888888779999999999988887765 332 122222111110 12346999
Q ss_pred EEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 230 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
|+-+-.- ..++.+.+.|++||.+++...
T Consensus 221 vid~~g~-------~~~~~~~~~l~~~G~iv~~G~ 248 (334)
T 3qwb_A 221 SFDSVGK-------DTFEISLAALKRKGVFVSFGN 248 (334)
T ss_dssp EEECCGG-------GGHHHHHHHEEEEEEEEECCC
T ss_pred EEECCCh-------HHHHHHHHHhccCCEEEEEcC
Confidence 8865432 357788899999999998753
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=94.23 E-value=0.21 Score=46.17 Aligned_cols=93 Identities=16% Similarity=0.106 Sum_probs=63.7
Q ss_pred CCCEEEEEC--CCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CCCCccceE
Q 017428 158 RPKNVVDVG--CGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FPDGQFDLV 230 (371)
Q Consensus 158 ~~~~VLDlG--~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~~fD~v 230 (371)
++.+||-+| .|.|..+..+++..+++|++++.+++.++.+++ .|. . .++..+-.+.. ...+.+|+|
T Consensus 163 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~----~Ga--~-~~~~~~~~~~~~~~~~~~~~g~D~v 235 (362)
T 2c0c_A 163 EGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKS----LGC--D-RPINYKTEPVGTVLKQEYPEGVDVV 235 (362)
T ss_dssp TTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTC--S-EEEETTTSCHHHHHHHHCTTCEEEE
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH----cCC--c-EEEecCChhHHHHHHHhcCCCCCEE
Confidence 489999999 356788888888778999999999988877765 332 1 12221111110 112468998
Q ss_pred EccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
+-+-. . ..++.+.+.|+++|.+++...
T Consensus 236 id~~g-----~--~~~~~~~~~l~~~G~iv~~g~ 262 (362)
T 2c0c_A 236 YESVG-----G--AMFDLAVDALATKGRLIVIGF 262 (362)
T ss_dssp EECSC-----T--HHHHHHHHHEEEEEEEEECCC
T ss_pred EECCC-----H--HHHHHHHHHHhcCCEEEEEeC
Confidence 86532 1 467889999999999888653
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=94.14 E-value=0.1 Score=47.90 Aligned_cols=93 Identities=16% Similarity=0.161 Sum_probs=65.4
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-CCCccce
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-PDGQFDL 229 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-~~~~fD~ 229 (371)
++.+||-+|+|. |..+..+++.. +.+|+++|.+++.++.+++ .|.. .++..+- +.. . ....+|+
T Consensus 171 ~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~----lGa~---~~i~~~~-~~~~~v~~~t~g~g~d~ 242 (345)
T 3jv7_A 171 PGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALARE----VGAD---AAVKSGA-GAADAIRELTGGQGATA 242 (345)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHH----TTCS---EEEECST-THHHHHHHHHGGGCEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCC---EEEcCCC-cHHHHHHHHhCCCCCeE
Confidence 489999999876 88888898887 7899999999998888765 3431 2222111 110 1 1236898
Q ss_pred EEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 230 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
|+-.-. . ...++.+.+.|++||.+++...
T Consensus 243 v~d~~G-----~-~~~~~~~~~~l~~~G~iv~~G~ 271 (345)
T 3jv7_A 243 VFDFVG-----A-QSTIDTAQQVVAVDGHISVVGI 271 (345)
T ss_dssp EEESSC-----C-HHHHHHHHHHEEEEEEEEECSC
T ss_pred EEECCC-----C-HHHHHHHHHHHhcCCEEEEECC
Confidence 875322 1 3478899999999999998754
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=94.09 E-value=0.069 Score=48.04 Aligned_cols=97 Identities=19% Similarity=0.285 Sum_probs=57.8
Q ss_pred CCeEEEEcCCCCC--CCCCCccceEEccccccCcC--------------------CHHHHHHHHHHhcCCCcEEEEEecc
Q 017428 208 DKVSFQVGDALQQ--PFPDGQFDLVWSMESGEHMP--------------------DKSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 208 ~~v~~~~~d~~~~--~~~~~~fD~v~~~~~l~~~~--------------------~~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
.++.++++|..+. .+++++||+|++.--..... ....+++++.++|||||.+++....
T Consensus 20 ~~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~d 99 (297)
T 2zig_A 20 GVHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVGD 99 (297)
T ss_dssp -CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred cCCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEECC
Confidence 3578999998762 25678999999864332111 1245788999999999999886421
Q ss_pred CCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEEEecCC
Q 017428 266 HRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQ 321 (371)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~~ 321 (371)
.. ... . . . ..... +.-...+..+++++||.......|..
T Consensus 100 ~~--~~~----~----~-~---g~~~~---~~~~~~l~~~~~~~Gf~~~~~iiW~K 138 (297)
T 2zig_A 100 VA--VAR----R----R-F---GRHLV---FPLHADIQVRCRKLGFDNLNPIIWHK 138 (297)
T ss_dssp EE--EEC----C------------EEE---ECHHHHHHHHHHHTTCEEEEEEEEEC
T ss_pred Cc--ccc----c----c-C---Ccccc---cccHHHHHHHHHHcCCeeeccEEEeC
Confidence 00 000 0 0 0 00000 01134677888999998777666643
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.06 E-value=0.21 Score=45.65 Aligned_cols=91 Identities=21% Similarity=0.199 Sum_probs=63.7
Q ss_pred CCCEEEEECC--CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------CCCCcc
Q 017428 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------FPDGQF 227 (371)
Q Consensus 158 ~~~~VLDlG~--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~~f 227 (371)
++.+||-+|+ |.|..+..+++..+++|+++|.++..++.+++ .|. . .++ |..+.. .....+
T Consensus 166 ~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~----~ga--~-~~~--d~~~~~~~~~~~~~~~~~~~ 236 (343)
T 2eih_A 166 PGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKA----LGA--D-ETV--NYTHPDWPKEVRRLTGGKGA 236 (343)
T ss_dssp TTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----HTC--S-EEE--ETTSTTHHHHHHHHTTTTCE
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh----cCC--C-EEE--cCCcccHHHHHHHHhCCCCc
Confidence 4899999998 56778888888778999999999998887764 232 1 122 332211 112469
Q ss_pred ceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 228 DLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 228 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
|+|+.... . ..++.+.+.|+++|.+++...
T Consensus 237 d~vi~~~g-~------~~~~~~~~~l~~~G~~v~~g~ 266 (343)
T 2eih_A 237 DKVVDHTG-A------LYFEGVIKATANGGRIAIAGA 266 (343)
T ss_dssp EEEEESSC-S------SSHHHHHHHEEEEEEEEESSC
T ss_pred eEEEECCC-H------HHHHHHHHhhccCCEEEEEec
Confidence 99986544 2 246788899999999887653
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=94.04 E-value=0.095 Score=48.37 Aligned_cols=89 Identities=16% Similarity=0.177 Sum_probs=61.0
Q ss_pred CEEEEECCCc-ChHH-HHHH-HHcCCE-EEEEeCCHH---HHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC-----CCcc
Q 017428 160 KNVVDVGCGI-GGSS-RYLA-KKFGAK-CQGITLSPV---QAQRANALAAARGLADKVSFQVGDALQQPFP-----DGQF 227 (371)
Q Consensus 160 ~~VLDlG~Gt-G~~~-~~l~-~~~~~~-v~gvD~s~~---~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-----~~~f 227 (371)
.+||-+|+|. |..+ ..++ +..+++ |+++|.+++ ..+.+++ .| ...+ |..+..+. .+.+
T Consensus 174 ~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~----lG----a~~v--~~~~~~~~~i~~~~gg~ 243 (357)
T 2b5w_A 174 SSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEE----LD----ATYV--DSRQTPVEDVPDVYEQM 243 (357)
T ss_dssp CEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHH----TT----CEEE--ETTTSCGGGHHHHSCCE
T ss_pred CEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHH----cC----Cccc--CCCccCHHHHHHhCCCC
Confidence 8999999864 7777 8888 766876 999999987 7777654 33 2322 33322111 1368
Q ss_pred ceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 228 DLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 228 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
|+|+-.-. . ...++.+.+.|++||.+++...
T Consensus 244 Dvvid~~g-----~-~~~~~~~~~~l~~~G~iv~~g~ 274 (357)
T 2b5w_A 244 DFIYEATG-----F-PKHAIQSVQALAPNGVGALLGV 274 (357)
T ss_dssp EEEEECSC-----C-HHHHHHHHHHEEEEEEEEECCC
T ss_pred CEEEECCC-----C-hHHHHHHHHHHhcCCEEEEEeC
Confidence 98874322 2 2467889999999999988653
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=94.04 E-value=0.22 Score=45.67 Aligned_cols=90 Identities=13% Similarity=0.241 Sum_probs=62.0
Q ss_pred CCCEEEEEC-CC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC------CCCCCccce
Q 017428 158 RPKNVVDVG-CG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ------PFPDGQFDL 229 (371)
Q Consensus 158 ~~~~VLDlG-~G-tG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~fD~ 229 (371)
++.+||=+| +| .|..+..+++..|++|++++.+++.++.+++ .|.. .++ |..+. ......+|+
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----lGa~---~vi--~~~~~~~~~~~~~~~~g~Dv 220 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKK----MGAD---IVL--NHKESLLNQFKTQGIELVDY 220 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHH----HTCS---EEE--CTTSCHHHHHHHHTCCCEEE
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh----cCCc---EEE--ECCccHHHHHHHhCCCCccE
Confidence 488999994 44 4778888888779999999999998888776 2321 112 22221 012346998
Q ss_pred EEccccccCcCCHHHHHHHHHHhcCCCcEEEEE
Q 017428 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262 (371)
Q Consensus 230 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 262 (371)
|+-.. .....++.+.++|+++|.++..
T Consensus 221 v~d~~------g~~~~~~~~~~~l~~~G~iv~~ 247 (346)
T 3fbg_A 221 VFCTF------NTDMYYDDMIQLVKPRGHIATI 247 (346)
T ss_dssp EEESS------CHHHHHHHHHHHEEEEEEEEES
T ss_pred EEECC------CchHHHHHHHHHhccCCEEEEE
Confidence 88542 2345678899999999999764
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=93.93 E-value=0.31 Score=45.00 Aligned_cols=90 Identities=19% Similarity=0.305 Sum_probs=63.7
Q ss_pred CCCEEEEEC-CC-cChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC------CCCCCccc
Q 017428 158 RPKNVVDVG-CG-IGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ------PFPDGQFD 228 (371)
Q Consensus 158 ~~~~VLDlG-~G-tG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~fD 228 (371)
++.+||=+| +| .|..+..+++.. +++|+++|.+++.++.+++ .|.. .++ |..+. ....+.+|
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~----lGad---~vi--~~~~~~~~~v~~~~~~g~D 241 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKS----LGAH---HVI--DHSKPLAAEVAALGLGAPA 241 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHH----TTCS---EEE--CTTSCHHHHHHTTCSCCEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHH----cCCC---EEE--eCCCCHHHHHHHhcCCCce
Confidence 478999998 55 488899999875 8899999999988888765 3421 112 22221 12235799
Q ss_pred eEEccccccCcCCHHHHHHHHHHhcCCCcEEEEE
Q 017428 229 LVWSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262 (371)
Q Consensus 229 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 262 (371)
+|+-.- .-...++.+.++|+|+|.+++.
T Consensus 242 vvid~~------g~~~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 242 FVFSTT------HTDKHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp EEEECS------CHHHHHHHHHHHSCTTCEEEEC
T ss_pred EEEECC------CchhhHHHHHHHhcCCCEEEEE
Confidence 887532 2345788999999999999986
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.59 E-value=0.24 Score=45.59 Aligned_cols=90 Identities=17% Similarity=0.232 Sum_probs=61.5
Q ss_pred CCCEEEEECC--CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------CCCCcc
Q 017428 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------FPDGQF 227 (371)
Q Consensus 158 ~~~~VLDlG~--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~~f 227 (371)
++.+||-.|+ |.|..+..+++..+++|++++.+++.++.+++ .|. . ..+ |..+.. .....+
T Consensus 170 ~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----~ga--~-~~~--d~~~~~~~~~~~~~~~~~~~ 240 (351)
T 1yb5_A 170 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQ----NGA--H-EVF--NHREVNYIDKIKKYVGEKGI 240 (351)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTC--S-EEE--ETTSTTHHHHHHHHHCTTCE
T ss_pred CcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHH----cCC--C-EEE--eCCCchHHHHHHHHcCCCCc
Confidence 4889999996 45677777777778999999999988876654 332 1 122 322211 112369
Q ss_pred ceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 228 DLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 228 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
|+|+.+.. ...+..+.++|+++|.+++..
T Consensus 241 D~vi~~~G-------~~~~~~~~~~l~~~G~iv~~g 269 (351)
T 1yb5_A 241 DIIIEMLA-------NVNLSKDLSLLSHGGRVIVVG 269 (351)
T ss_dssp EEEEESCH-------HHHHHHHHHHEEEEEEEEECC
T ss_pred EEEEECCC-------hHHHHHHHHhccCCCEEEEEe
Confidence 99876532 135778899999999998865
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=93.45 E-value=0.033 Score=51.61 Aligned_cols=95 Identities=20% Similarity=0.195 Sum_probs=62.3
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC-CC--CCCCCccceEEcc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL-QQ--PFPDGQFDLVWSM 233 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~--~~~~~~fD~v~~~ 233 (371)
++.+||-+|+|. |..+..+++..+++|+++|.++..++.+++ .|.. .++..+-. +. ... +.+|+|+-.
T Consensus 179 ~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~----lGa~---~v~~~~~~~~~~~~~~-~~~D~vid~ 250 (360)
T 1piw_A 179 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMK----MGAD---HYIATLEEGDWGEKYF-DTFDLIVVC 250 (360)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH----HTCS---EEEEGGGTSCHHHHSC-SCEEEEEEC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH----cCCC---EEEcCcCchHHHHHhh-cCCCEEEEC
Confidence 489999999864 777888888778999999999988887765 2321 12221111 11 111 479999865
Q ss_pred ccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 234 ESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 234 ~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
-.-.. ...++.+.+.|++||.+++...
T Consensus 251 ~g~~~----~~~~~~~~~~l~~~G~iv~~g~ 277 (360)
T 1piw_A 251 ASSLT----DIDFNIMPKAMKVGGRIVSISI 277 (360)
T ss_dssp CSCST----TCCTTTGGGGEEEEEEEEECCC
T ss_pred CCCCc----HHHHHHHHHHhcCCCEEEEecC
Confidence 43200 1234567889999999987653
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.40 E-value=0.21 Score=45.27 Aligned_cols=91 Identities=15% Similarity=0.085 Sum_probs=62.0
Q ss_pred CCCEEEEECC--CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------CCCCcc
Q 017428 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------FPDGQF 227 (371)
Q Consensus 158 ~~~~VLDlG~--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~~f 227 (371)
++.+||-.|+ |.|..+..+++..+++|+++|.+++.++.+++ .+. .. .+ |..+.. .....+
T Consensus 140 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~----~g~--~~-~~--~~~~~~~~~~~~~~~~~~~~ 210 (327)
T 1qor_A 140 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALK----AGA--WQ-VI--NYREEDLVERLKEITGGKKV 210 (327)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH----HTC--SE-EE--ETTTSCHHHHHHHHTTTCCE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCC--CE-EE--ECCCccHHHHHHHHhCCCCc
Confidence 4889999993 45667777777668999999999988877765 232 11 22 322211 112469
Q ss_pred ceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 228 DLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 228 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
|+|+.+.. ...++.+.+.|++||.+++...
T Consensus 211 D~vi~~~g-------~~~~~~~~~~l~~~G~iv~~g~ 240 (327)
T 1qor_A 211 RVVYDSVG-------RDTWERSLDCLQRRGLMVSFGN 240 (327)
T ss_dssp EEEEECSC-------GGGHHHHHHTEEEEEEEEECCC
T ss_pred eEEEECCc-------hHHHHHHHHHhcCCCEEEEEec
Confidence 99886543 2457888999999999988653
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.39 E-value=0.18 Score=46.85 Aligned_cols=94 Identities=18% Similarity=0.107 Sum_probs=63.3
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC---CCC-----C-CCCCc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA---LQQ-----P-FPDGQ 226 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~-----~-~~~~~ 226 (371)
++.+||-+|+|. |..+..+++..+ ++|++++.+++.++.+++ .|. -.++..+. .+. . .....
T Consensus 195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~----lGa---~~vi~~~~~~~~~~~~~v~~~~~g~g 267 (380)
T 1vj0_A 195 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE----IGA---DLTLNRRETSVEERRKAIMDITHGRG 267 (380)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH----TTC---SEEEETTTSCHHHHHHHHHHHTTTSC
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH----cCC---cEEEeccccCcchHHHHHHHHhCCCC
Confidence 489999999764 778888888778 599999999998887764 342 12222210 010 0 11236
Q ss_pred cceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 227 FDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 227 fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
+|+|+-.-.- ...++.+.+.|+++|.+++...
T Consensus 268 ~Dvvid~~g~------~~~~~~~~~~l~~~G~iv~~G~ 299 (380)
T 1vj0_A 268 ADFILEATGD------SRALLEGSELLRRGGFYSVAGV 299 (380)
T ss_dssp EEEEEECSSC------TTHHHHHHHHEEEEEEEEECCC
T ss_pred CcEEEECCCC------HHHHHHHHHHHhcCCEEEEEec
Confidence 9998854321 1357788899999999988653
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=93.30 E-value=0.25 Score=45.66 Aligned_cols=88 Identities=14% Similarity=0.197 Sum_probs=59.8
Q ss_pred CCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCH---HHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC------CCccc
Q 017428 159 PKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSP---VQAQRANALAAARGLADKVSFQVGDALQQPFP------DGQFD 228 (371)
Q Consensus 159 ~~~VLDlG~Gt-G~~~~~l~~~~~~~v~gvD~s~---~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~------~~~fD 228 (371)
+.+||-+|+|. |..+..+++..|++|+++|.++ +..+.+++ .| ...+ | .+ .+. .+.+|
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~----~g----a~~v--~-~~-~~~~~~~~~~~~~d 248 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEE----TK----TNYY--N-SS-NGYDKLKDSVGKFD 248 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHH----HT----CEEE--E-CT-TCSHHHHHHHCCEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHH----hC----Ccee--c-hH-HHHHHHHHhCCCCC
Confidence 78999999853 5666777776688999999998 77776654 23 2222 3 22 211 14689
Q ss_pred eEEccccccCcCCHHHHH-HHHHHhcCCCcEEEEEec
Q 017428 229 LVWSMESGEHMPDKSKFV-SELARVTAPAGTIIIVTW 264 (371)
Q Consensus 229 ~v~~~~~l~~~~~~~~~l-~~~~~~LkpgG~l~i~~~ 264 (371)
+|+..-... ..+ +.+.+.|+++|.+++...
T Consensus 249 ~vid~~g~~------~~~~~~~~~~l~~~G~iv~~g~ 279 (366)
T 2cdc_A 249 VIIDATGAD------VNILGNVIPLLGRNGVLGLFGF 279 (366)
T ss_dssp EEEECCCCC------THHHHHHGGGEEEEEEEEECSC
T ss_pred EEEECCCCh------HHHHHHHHHHHhcCCEEEEEec
Confidence 988654321 245 888999999999888653
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=93.23 E-value=0.21 Score=45.94 Aligned_cols=91 Identities=19% Similarity=0.228 Sum_probs=62.7
Q ss_pred CCCEEEEECC--CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-------CCCCccc
Q 017428 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-------FPDGQFD 228 (371)
Q Consensus 158 ~~~~VLDlG~--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-------~~~~~fD 228 (371)
++.+||-+|+ |.|..+..+++..|++|+++|.++..++.+++ .|. -..+ |..+.. ...+.+|
T Consensus 167 ~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----lGa---~~~~--~~~~~~~~~~~~~~~~~g~D 237 (353)
T 4dup_A 167 EGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACER----LGA---KRGI--NYRSEDFAAVIKAETGQGVD 237 (353)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----HTC---SEEE--ETTTSCHHHHHHHHHSSCEE
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh----cCC---CEEE--eCCchHHHHHHHHHhCCCce
Confidence 4899999953 35777888888779999999999998888765 232 1122 222211 1135699
Q ss_pred eEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 229 LVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 229 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
+|+-+-.- ..+..+.+.|+++|.+++...
T Consensus 238 vvid~~g~-------~~~~~~~~~l~~~G~iv~~g~ 266 (353)
T 4dup_A 238 IILDMIGA-------AYFERNIASLAKDGCLSIIAF 266 (353)
T ss_dssp EEEESCCG-------GGHHHHHHTEEEEEEEEECCC
T ss_pred EEEECCCH-------HHHHHHHHHhccCCEEEEEEe
Confidence 98865432 256788899999999988653
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=93.14 E-value=0.25 Score=45.02 Aligned_cols=69 Identities=12% Similarity=0.090 Sum_probs=51.8
Q ss_pred CCEEEEECCCcChHHHHHHHHcC---CEE-EEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---CCCCccceEE
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFG---AKC-QGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---FPDGQFDLVW 231 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~---~~v-~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~v~ 231 (371)
..+|+|+-||.|.+...+.+. | ..| .++|+++...+..+.++. .. ++..|+.++. ++...+|+++
T Consensus 10 ~~~vidLFaG~GG~~~G~~~a-G~~~~~v~~a~e~d~~a~~ty~~N~~------~~-~~~~DI~~~~~~~i~~~~~Dil~ 81 (327)
T 3qv2_A 10 QVNVIEFFSGIGGLRSSYERS-SININATFIPFDINEIANKIYSKNFK------EE-VQVKNLDSISIKQIESLNCNTWF 81 (327)
T ss_dssp CEEEEEETCTTTHHHHHHHHS-SCCCCEEEEEECCCHHHHHHHHHHHC------CC-CBCCCTTTCCHHHHHHTCCCEEE
T ss_pred CCEEEEECCChhHHHHHHHHc-CCCceEEEEEEECCHHHHHHHHHHCC------CC-cccCChhhcCHHHhccCCCCEEE
Confidence 578999999999999998775 4 346 699999999888877752 22 5678888764 2223689998
Q ss_pred cccc
Q 017428 232 SMES 235 (371)
Q Consensus 232 ~~~~ 235 (371)
...-
T Consensus 82 ggpP 85 (327)
T 3qv2_A 82 MSPP 85 (327)
T ss_dssp ECCC
T ss_pred ecCC
Confidence 6543
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=93.13 E-value=0.093 Score=47.60 Aligned_cols=91 Identities=14% Similarity=0.190 Sum_probs=62.3
Q ss_pred EEEEECC--CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-CCCCCccceEEcccccc
Q 017428 161 NVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-PFPDGQFDLVWSMESGE 237 (371)
Q Consensus 161 ~VLDlG~--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~v~~~~~l~ 237 (371)
+||=+|+ |.|..+..+++..|++|++++.+++..+.+++ .|.. ..+-..+.... ....+.+|+|+-.-
T Consensus 149 ~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~~----lGa~--~vi~~~~~~~~~~~~~~~~d~v~d~~--- 219 (324)
T 3nx4_A 149 EVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKS----LGAN--RILSRDEFAESRPLEKQLWAGAIDTV--- 219 (324)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHH----HTCS--EEEEGGGSSCCCSSCCCCEEEEEESS---
T ss_pred eEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh----cCCC--EEEecCCHHHHHhhcCCCccEEEECC---
Confidence 4999986 45888999998889999999999998888865 3321 11211111111 12345789876432
Q ss_pred CcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 238 HMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 238 ~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
.. ..++.+.+.|+|+|.+++...
T Consensus 220 --g~--~~~~~~~~~l~~~G~iv~~G~ 242 (324)
T 3nx4_A 220 --GD--KVLAKVLAQMNYGGCVAACGL 242 (324)
T ss_dssp --CH--HHHHHHHHTEEEEEEEEECCC
T ss_pred --Cc--HHHHHHHHHHhcCCEEEEEec
Confidence 22 378899999999999998753
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=93.12 E-value=0.26 Score=45.28 Aligned_cols=91 Identities=16% Similarity=0.110 Sum_probs=61.4
Q ss_pred CCCEEEEECC--CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------CCCCcc
Q 017428 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------FPDGQF 227 (371)
Q Consensus 158 ~~~~VLDlG~--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~~f 227 (371)
++.+||-.|+ |.|..+..+++..+++|+++|.+++.++.+++. |. .. .+ |..+.. .....+
T Consensus 162 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----g~--~~-~~--~~~~~~~~~~~~~~~~~~~~ 232 (354)
T 2j8z_A 162 AGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKL----GA--AA-GF--NYKKEDFSEATLKFTKGAGV 232 (354)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----TC--SE-EE--ETTTSCHHHHHHHHTTTSCE
T ss_pred CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc----CC--cE-EE--ecCChHHHHHHHHHhcCCCc
Confidence 4889999984 456677777776689999999999888877442 32 11 12 222211 122469
Q ss_pred ceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 228 DLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 228 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
|+|+.+..- ..+..+.+.|++||.+++...
T Consensus 233 d~vi~~~G~-------~~~~~~~~~l~~~G~iv~~G~ 262 (354)
T 2j8z_A 233 NLILDCIGG-------SYWEKNVNCLALDGRWVLYGL 262 (354)
T ss_dssp EEEEESSCG-------GGHHHHHHHEEEEEEEEECCC
T ss_pred eEEEECCCc-------hHHHHHHHhccCCCEEEEEec
Confidence 998865432 146778899999999988653
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=92.88 E-value=0.37 Score=44.26 Aligned_cols=91 Identities=12% Similarity=0.110 Sum_probs=61.3
Q ss_pred C--CEEEEECC--CcChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-------CCCCc
Q 017428 159 P--KNVVDVGC--GIGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-------FPDGQ 226 (371)
Q Consensus 159 ~--~~VLDlG~--GtG~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-------~~~~~ 226 (371)
+ .+||-.|+ |.|..+..+++..|+ +|+++|.+++.++.+++. .|. .. . .|..+.. ...+.
T Consensus 159 g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~---~g~--~~-~--~d~~~~~~~~~~~~~~~~~ 230 (357)
T 2zb4_A 159 GSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSE---LGF--DA-A--INYKKDNVAEQLRESCPAG 230 (357)
T ss_dssp TSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT---SCC--SE-E--EETTTSCHHHHHHHHCTTC
T ss_pred CCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHH---cCC--ce-E--EecCchHHHHHHHHhcCCC
Confidence 7 89999997 446667777776688 999999998777766542 232 11 1 2332211 11236
Q ss_pred cceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 227 FDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 227 fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
+|+|+.+-. ...++.+.++|++||.+++...
T Consensus 231 ~d~vi~~~G-------~~~~~~~~~~l~~~G~iv~~G~ 261 (357)
T 2zb4_A 231 VDVYFDNVG-------GNISDTVISQMNENSHIILCGQ 261 (357)
T ss_dssp EEEEEESCC-------HHHHHHHHHTEEEEEEEEECCC
T ss_pred CCEEEECCC-------HHHHHHHHHHhccCcEEEEECC
Confidence 898886543 2568889999999999988653
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=92.64 E-value=0.23 Score=45.38 Aligned_cols=91 Identities=14% Similarity=0.041 Sum_probs=59.3
Q ss_pred CCCEEEEECCCcC-hHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------CCCCcc
Q 017428 158 RPKNVVDVGCGIG-GSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------FPDGQF 227 (371)
Q Consensus 158 ~~~~VLDlG~GtG-~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~~f 227 (371)
++.+||=+|+|.+ ..+..+++.. +++|+++|.+++-++.+++ .|.. .++ |..+.. .....+
T Consensus 163 ~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~----~Ga~---~~i--~~~~~~~~~~v~~~t~g~g~ 233 (348)
T 4eez_A 163 PGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKK----IGAD---VTI--NSGDVNPVDEIKKITGGLGV 233 (348)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHH----TTCS---EEE--EC-CCCHHHHHHHHTTSSCE
T ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhh----cCCe---EEE--eCCCCCHHHHhhhhcCCCCc
Confidence 4899999999864 4566666655 7899999999988777665 3321 122 222211 112346
Q ss_pred ceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 228 DLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 228 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
|.++.... -...+....+.|+++|.+++..
T Consensus 234 d~~~~~~~------~~~~~~~~~~~l~~~G~~v~~g 263 (348)
T 4eez_A 234 QSAIVCAV------ARIAFEQAVASLKPMGKMVAVA 263 (348)
T ss_dssp EEEEECCS------CHHHHHHHHHTEEEEEEEEECC
T ss_pred eEEEEecc------CcchhheeheeecCCceEEEEe
Confidence 66654321 2456788899999999998865
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=92.59 E-value=1.9 Score=37.69 Aligned_cols=93 Identities=13% Similarity=0.110 Sum_probs=61.0
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES 235 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~ 235 (371)
.++||=.| + |.++..+++.+ +.+|++++-++........ .+++++.+|+.++. -..+|+|+....
T Consensus 5 ~~~ilVtG-a-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~--------~~~~~~~~D~~d~~--~~~~d~vi~~a~ 72 (286)
T 3ius_A 5 TGTLLSFG-H-GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRA--------SGAEPLLWPGEEPS--LDGVTHLLISTA 72 (286)
T ss_dssp CCEEEEET-C-CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHH--------TTEEEEESSSSCCC--CTTCCEEEECCC
T ss_pred cCcEEEEC-C-cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhh--------CCCeEEEecccccc--cCCCCEEEECCC
Confidence 36899999 4 88888888776 7899999998865443322 36899999998865 467899987665
Q ss_pred ccCcCCH--HHHHHHHHHhcCCCcEEEEEe
Q 017428 236 GEHMPDK--SKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 236 l~~~~~~--~~~l~~~~~~LkpgG~l~i~~ 263 (371)
.....+. ..+++.+.+.-..-+.+++..
T Consensus 73 ~~~~~~~~~~~l~~a~~~~~~~~~~~v~~S 102 (286)
T 3ius_A 73 PDSGGDPVLAALGDQIAARAAQFRWVGYLS 102 (286)
T ss_dssp CBTTBCHHHHHHHHHHHHTGGGCSEEEEEE
T ss_pred ccccccHHHHHHHHHHHhhcCCceEEEEee
Confidence 5443333 334443333212224555543
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=92.53 E-value=0.41 Score=43.50 Aligned_cols=91 Identities=16% Similarity=0.121 Sum_probs=62.2
Q ss_pred CCCEEEEECC--CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------CCCCcc
Q 017428 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------FPDGQF 227 (371)
Q Consensus 158 ~~~~VLDlG~--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~~f 227 (371)
++.+||-.|+ |.|..+..++...+++|+++|.+++.++.+++ .+. .. .+ |..+.. .....+
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~----~g~--~~-~~--d~~~~~~~~~i~~~~~~~~~ 215 (333)
T 1wly_A 145 PGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARK----LGC--HH-TI--NYSTQDFAEVVREITGGKGV 215 (333)
T ss_dssp TTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----HTC--SE-EE--ETTTSCHHHHHHHHHTTCCE
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cCC--CE-EE--ECCCHHHHHHHHHHhCCCCC
Confidence 4889999995 56777777777778999999999988877754 232 11 12 332211 112469
Q ss_pred ceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 228 DLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 228 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
|+|+.+..- ..++.+.+.|++||.+++...
T Consensus 216 d~vi~~~g~-------~~~~~~~~~l~~~G~iv~~g~ 245 (333)
T 1wly_A 216 DVVYDSIGK-------DTLQKSLDCLRPRGMCAAYGH 245 (333)
T ss_dssp EEEEECSCT-------TTHHHHHHTEEEEEEEEECCC
T ss_pred eEEEECCcH-------HHHHHHHHhhccCCEEEEEec
Confidence 998865431 347788899999999888653
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=92.44 E-value=0.095 Score=48.04 Aligned_cols=91 Identities=16% Similarity=0.210 Sum_probs=61.8
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC-------CCCccc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF-------PDGQFD 228 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-------~~~~fD 228 (371)
++.+||-+|+|. |..+..+++..++ +|+++|.+++.++.+++. . . .+ .|..+..+ ....+|
T Consensus 164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a-----~--~v--~~~~~~~~~~~~~~~~~~g~D 233 (343)
T 2dq4_A 164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-A-----D--RL--VNPLEEDLLEVVRRVTGSGVE 233 (343)
T ss_dssp TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-C-----S--EE--ECTTTSCHHHHHHHHHSSCEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-H-----H--hc--cCcCccCHHHHHHHhcCCCCC
Confidence 488999999864 7778888887788 899999999887766542 1 1 11 23222111 124689
Q ss_pred eEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 229 LVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 229 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
+|+-.-. . ...++.+.+.|+++|.+++...
T Consensus 234 ~vid~~g-----~-~~~~~~~~~~l~~~G~iv~~g~ 263 (343)
T 2dq4_A 234 VLLEFSG-----N-EAAIHQGLMALIPGGEARILGI 263 (343)
T ss_dssp EEEECSC-----C-HHHHHHHHHHEEEEEEEEECCC
T ss_pred EEEECCC-----C-HHHHHHHHHHHhcCCEEEEEec
Confidence 9875432 1 3467889999999999887653
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=92.41 E-value=0.33 Score=44.22 Aligned_cols=66 Identities=17% Similarity=0.076 Sum_probs=49.2
Q ss_pred CCEEEEECCCcChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC-CCCccceEEcc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF-PDGQFDLVWSM 233 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~v~~~ 233 (371)
+.+|+|+.||.|.+...+... |. .|.++|+++..++..+.++.. .. .+|+.++.. .-..+|+|+..
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~a-G~~~v~~~e~d~~a~~t~~~N~~~------~~--~~Di~~~~~~~~~~~D~l~~g 78 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESC-GAECVYSNEWDKYAQEVYEMNFGE------KP--EGDITQVNEKTIPDHDILCAG 78 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHT-TCEEEEEECCCHHHHHHHHHHHSC------CC--BSCGGGSCGGGSCCCSEEEEE
T ss_pred CCcEEEECCCcCHHHHHHHHC-CCeEEEEEeCCHHHHHHHHHHcCC------CC--cCCHHHcCHhhCCCCCEEEEC
Confidence 579999999999999998876 55 477899999999888877622 11 577776531 11358999874
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=92.36 E-value=0.16 Score=46.87 Aligned_cols=95 Identities=16% Similarity=0.103 Sum_probs=59.8
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-CCCCCccceEEcccc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-PFPDGQFDLVWSMES 235 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~v~~~~~ 235 (371)
++.+||-+|+|. |..+..+++..+++|+++|.+++..+.+++ ..|.. .+ +...+.... .. .+.+|+|+-.-.
T Consensus 180 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~---~lGa~-~v-i~~~~~~~~~~~-~~g~D~vid~~g 253 (357)
T 2cf5_A 180 PGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQ---DLGAD-DY-VIGSDQAKMSEL-ADSLDYVIDTVP 253 (357)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHT---TSCCS-CE-EETTCHHHHHHS-TTTEEEEEECCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH---HcCCc-ee-eccccHHHHHHh-cCCCCEEEECCC
Confidence 488999999864 667778888778999999999877766552 23321 11 111110000 01 146899875432
Q ss_pred ccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 236 GEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 236 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
-. ..++.+.+.|+|||.+++...
T Consensus 254 ~~------~~~~~~~~~l~~~G~iv~~G~ 276 (357)
T 2cf5_A 254 VH------HALEPYLSLLKLDGKLILMGV 276 (357)
T ss_dssp SC------CCSHHHHTTEEEEEEEEECSC
T ss_pred Ch------HHHHHHHHHhccCCEEEEeCC
Confidence 21 124567789999999988653
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=92.29 E-value=0.6 Score=44.54 Aligned_cols=94 Identities=23% Similarity=0.213 Sum_probs=63.7
Q ss_pred CCCCEEEEECC-C-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-------------
Q 017428 157 KRPKNVVDVGC-G-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP------------- 221 (371)
Q Consensus 157 ~~~~~VLDlG~-G-tG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------------- 221 (371)
.++.+||=+|+ | .|..+..+++..|+++++++.++..++.+++ .|.. .++...-.+..
T Consensus 227 ~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~d~~~~~~~~~~~~~~~ 299 (456)
T 3krt_A 227 KQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICRA----MGAE---AIIDRNAEGYRFWKDENTQDPKEW 299 (456)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----HTCC---EEEETTTTTCCSEEETTEECHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHh----hCCc---EEEecCcCcccccccccccchHHH
Confidence 35899999997 3 5778888888779999999999988888765 3331 12211111110
Q ss_pred ----------CCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 222 ----------FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 222 ----------~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
.....+|+|+-.-. . ..+..+.++|++||.+++.-.
T Consensus 300 ~~~~~~i~~~t~g~g~Dvvid~~G-----~--~~~~~~~~~l~~~G~iv~~G~ 345 (456)
T 3krt_A 300 KRFGKRIRELTGGEDIDIVFEHPG-----R--ETFGASVFVTRKGGTITTCAS 345 (456)
T ss_dssp HHHHHHHHHHHTSCCEEEEEECSC-----H--HHHHHHHHHEEEEEEEEESCC
T ss_pred HHHHHHHHHHhCCCCCcEEEEcCC-----c--hhHHHHHHHhhCCcEEEEEec
Confidence 11247898875322 1 467888999999999998643
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.20 E-value=1.1 Score=40.62 Aligned_cols=94 Identities=19% Similarity=0.204 Sum_probs=61.4
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC------CCCCccce
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP------FPDGQFDL 229 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------~~~~~fD~ 229 (371)
++.+||=.|+|. |..+..+++..++ .++++|.++..++.+++ .|. ...+...-.+.. .....+|+
T Consensus 160 ~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~----lGa---~~~i~~~~~~~~~~~~~~~~~~g~d~ 232 (346)
T 4a2c_A 160 ENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKS----FGA---MQTFNSSEMSAPQMQSVLRELRFNQL 232 (346)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTC---SEEEETTTSCHHHHHHHHGGGCSSEE
T ss_pred CCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHH----cCC---eEEEeCCCCCHHHHHHhhcccCCccc
Confidence 489999999875 5567777777765 57899999998887765 343 222222111110 11245777
Q ss_pred EEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 230 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
|+-.-. ....++.+.++|++||.+++...
T Consensus 233 v~d~~G------~~~~~~~~~~~l~~~G~~v~~g~ 261 (346)
T 4a2c_A 233 ILETAG------VPQTVELAVEIAGPHAQLALVGT 261 (346)
T ss_dssp EEECSC------SHHHHHHHHHHCCTTCEEEECCC
T ss_pred cccccc------ccchhhhhhheecCCeEEEEEec
Confidence 764321 24567888999999999998653
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=92.14 E-value=2.5 Score=36.96 Aligned_cols=78 Identities=15% Similarity=0.162 Sum_probs=54.8
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC-----CC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FP-----DG 225 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~-----~~ 225 (371)
+++||=.| |+|.++..+++.+ |++|++++.++..++...+.+...+.+.++.++.+|+.+.. +. .+
T Consensus 32 ~k~vlVTG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 110 (279)
T 1xg5_A 32 DRLALVTG-ASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHS 110 (279)
T ss_dssp TCEEEEES-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHhCC
Confidence 56788777 4566666666655 78999999998877776666666555456888999987742 10 13
Q ss_pred ccceEEcccccc
Q 017428 226 QFDLVWSMESGE 237 (371)
Q Consensus 226 ~fD~v~~~~~l~ 237 (371)
.+|+|+.+....
T Consensus 111 ~iD~vi~~Ag~~ 122 (279)
T 1xg5_A 111 GVDICINNAGLA 122 (279)
T ss_dssp CCSEEEECCCCC
T ss_pred CCCEEEECCCCC
Confidence 689988765543
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=92.05 E-value=0.38 Score=43.99 Aligned_cols=89 Identities=15% Similarity=0.135 Sum_probs=61.4
Q ss_pred CCCEEEEECC--CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC------CCCCccce
Q 017428 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP------FPDGQFDL 229 (371)
Q Consensus 158 ~~~~VLDlG~--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------~~~~~fD~ 229 (371)
++.+||-+|+ |.|..+..+++..+++|+++ .++..++.+++ .|. ..+. +-.+.. .....+|+
T Consensus 150 ~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~~----lGa----~~i~-~~~~~~~~~~~~~~~~g~D~ 219 (343)
T 3gaz_A 150 DGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYVRD----LGA----TPID-ASREPEDYAAEHTAGQGFDL 219 (343)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHHHH----HTS----EEEE-TTSCHHHHHHHHHTTSCEEE
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHHHH----cCC----CEec-cCCCHHHHHHHHhcCCCceE
Confidence 4899999994 35778888888779999999 88888777655 332 2222 222211 12346998
Q ss_pred EEccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 230 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
|+-+-. . ..+..+.+.|+++|.+++..
T Consensus 220 vid~~g-----~--~~~~~~~~~l~~~G~iv~~g 246 (343)
T 3gaz_A 220 VYDTLG-----G--PVLDASFSAVKRFGHVVSCL 246 (343)
T ss_dssp EEESSC-----T--HHHHHHHHHEEEEEEEEESC
T ss_pred EEECCC-----c--HHHHHHHHHHhcCCeEEEEc
Confidence 875432 1 46788889999999998864
|
| >4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A* | Back alignment and structure |
|---|
Probab=91.89 E-value=0.74 Score=43.37 Aligned_cols=45 Identities=20% Similarity=0.211 Sum_probs=37.5
Q ss_pred CCEEEEECCCcChHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHHH
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF------GAKCQGITLSPVQAQRANALAAA 203 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~------~~~v~gvD~s~~~~~~a~~~~~~ 203 (371)
+.+|+|+|.|+|.++..+.+.+ ..+|+.||+|+...+.-++++..
T Consensus 138 ~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~ 188 (432)
T 4f3n_A 138 TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLGA 188 (432)
T ss_dssp CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHHH
T ss_pred CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHhc
Confidence 4689999999999999887654 24799999999988877777764
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=91.88 E-value=3.4 Score=41.60 Aligned_cols=158 Identities=13% Similarity=0.050 Sum_probs=91.3
Q ss_pred CCEEEEECCCcChHHHHHHHHc---------CCEEEEEeCCHHHHHHHHHHHHHcC--------------CC--------
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---------GAKCQGITLSPVQAQRANALAAARG--------------LA-------- 207 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---------~~~v~gvD~s~~~~~~a~~~~~~~~--------------~~-------- 207 (371)
...|+-||||.=.....+.... +..++=||. |+.++.=++.+...+ .+
T Consensus 108 ~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~-p~v~~~K~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 186 (695)
T 2zwa_A 108 KIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDY-SDLLKIKIELIKTIPELSKIIGLSEDKDYVDDSNVDFLT 186 (695)
T ss_dssp EEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEEC-HHHHHHHHHHHHHCHHHHHHTTCCSSCSSCSCTTCCCEE
T ss_pred CcEEEEcccccCcceeeeeccCcccccccCCCCEEEECcc-HHHHHHHHHHHHcChHHHHhhcccccccccccccccccc
Confidence 5789999999988888886541 235556666 444444344443211 11
Q ss_pred -CCeEEEEcCCCCCC----------C-CCCccceEEccccccCcCC--HHHHHHHHHHhcCCCcEEEEEeccCCCCCcCc
Q 017428 208 -DKVSFQVGDALQQP----------F-PDGQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSE 273 (371)
Q Consensus 208 -~~v~~~~~d~~~~~----------~-~~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~ 273 (371)
++..++..|+.+.. + ..+..-++++=.++.+++. ..++|+.+.+ + |+|.+++.+...+... .
T Consensus 187 s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~-~-~~~~~~~~e~~~~~~~--~ 262 (695)
T 2zwa_A 187 TPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSK-M-ENSHFIILEQLIPKGP--F 262 (695)
T ss_dssp CSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHT-S-SSEEEEEEEECCTTCT--T
T ss_pred CCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhh-C-CCceEEEEEeecCCCC--C
Confidence 37889999998741 1 2233345666677788853 4678888875 4 6788877775433211 1
Q ss_pred cccChHHHHHHHHHhhcc-CCCCCCCHHHHHHHHHhCCCceEEEEecCC
Q 017428 274 ESLQPWEQELLKKICDAY-YLPAWCSTADYVKLLQSLSLEDIKAEDWSQ 321 (371)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ll~~aGF~~v~~~~~~~ 321 (371)
..+.......+......+ ....+.+.++..+.|.++||..+...++..
T Consensus 263 d~f~~~m~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~Gw~~v~~~~~~~ 311 (695)
T 2zwa_A 263 EPFSKQMLAHFKRNDSPLQSVLKYNTIESQVQRFNKLGFAYVNVGDMFQ 311 (695)
T ss_dssp SHHHHHHHHHHHHTTCCCCGGGTCCSHHHHHHHHHHTTCCEEEEEEHHH
T ss_pred ChHHHHHHHHHHHcCCCCCccccCCCHHHHHHHHHHCCCCCcceeeHHH
Confidence 111111111121111111 111345799999999999999877665443
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=91.85 E-value=0.29 Score=44.36 Aligned_cols=93 Identities=12% Similarity=0.155 Sum_probs=60.1
Q ss_pred CC-EEEEECC--CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC-CC-C-CCCCCccceEEc
Q 017428 159 PK-NVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA-LQ-Q-PFPDGQFDLVWS 232 (371)
Q Consensus 159 ~~-~VLDlG~--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~-~-~~~~~~fD~v~~ 232 (371)
+. +||-+|+ |.|..+..+++..+++|++++.+++.++.+++ .|.. ..+-..+. .+ . ....+.+|+|+-
T Consensus 149 g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~----lGa~--~~i~~~~~~~~~~~~~~~~~~d~vid 222 (328)
T 1xa0_A 149 ERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRV----LGAK--EVLAREDVMAERIRPLDKQRWAAAVD 222 (328)
T ss_dssp GGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHH----TTCS--EEEECC---------CCSCCEEEEEE
T ss_pred CCceEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----cCCc--EEEecCCcHHHHHHHhcCCcccEEEE
Confidence 54 8999997 45778888888778999999999887777754 3421 11111111 01 0 122346998875
Q ss_pred cccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 233 MESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 233 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
.-. . ..+..+.+.|++||.+++...
T Consensus 223 ~~g-----~--~~~~~~~~~l~~~G~~v~~G~ 247 (328)
T 1xa0_A 223 PVG-----G--RTLATVLSRMRYGGAVAVSGL 247 (328)
T ss_dssp CST-----T--TTHHHHHHTEEEEEEEEECSC
T ss_pred CCc-----H--HHHHHHHHhhccCCEEEEEee
Confidence 432 1 246788899999999988653
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=91.83 E-value=0.18 Score=46.59 Aligned_cols=93 Identities=28% Similarity=0.276 Sum_probs=59.7
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---CCCCccceEEcc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---FPDGQFDLVWSM 233 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~v~~~ 233 (371)
++.+||-+|+|. |..+..+++..+++|++++.++...+.+++. .|. . .++ |..+.. -..+.+|+|+-.
T Consensus 187 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~---lGa--~-~v~--~~~~~~~~~~~~~~~D~vid~ 258 (366)
T 1yqd_A 187 PGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKN---FGA--D-SFL--VSRDQEQMQAAAGTLDGIIDT 258 (366)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHT---SCC--S-EEE--ETTCHHHHHHTTTCEEEEEEC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh---cCC--c-eEE--eccCHHHHHHhhCCCCEEEEC
Confidence 388999999864 6677777777789999999998877665532 332 1 122 222110 001469998865
Q ss_pred ccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 234 ESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 234 ~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
-.... .++.+.+.|+++|.++....
T Consensus 259 ~g~~~------~~~~~~~~l~~~G~iv~~g~ 283 (366)
T 1yqd_A 259 VSAVH------PLLPLFGLLKSHGKLILVGA 283 (366)
T ss_dssp CSSCC------CSHHHHHHEEEEEEEEECCC
T ss_pred CCcHH------HHHHHHHHHhcCCEEEEEcc
Confidence 33211 24567788999999887653
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=91.59 E-value=0.77 Score=41.39 Aligned_cols=96 Identities=18% Similarity=0.065 Sum_probs=60.4
Q ss_pred HHcCCCCCCCCCCCEEEEEC-CC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-CCCC
Q 017428 147 RFAGVSEDPTKRPKNVVDVG-CG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-QPFP 223 (371)
Q Consensus 147 ~~~~~~~~~~~~~~~VLDlG-~G-tG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~ 223 (371)
....++ ++.+||=+| +| .|..+..+++..+++|++++ ++...+.+++ .|.. .++..+-.+ ..-.
T Consensus 146 ~~~~~~-----~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~-~~~~~~~~~~----lGa~---~~i~~~~~~~~~~~ 212 (321)
T 3tqh_A 146 NQAEVK-----QGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTA-SKRNHAFLKA----LGAE---QCINYHEEDFLLAI 212 (321)
T ss_dssp HHTTCC-----TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE-CHHHHHHHHH----HTCS---EEEETTTSCHHHHC
T ss_pred HhcCCC-----CCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEe-ccchHHHHHH----cCCC---EEEeCCCcchhhhh
Confidence 445554 489999996 55 58888888888799999997 5554555544 4432 122211111 1001
Q ss_pred CCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEE
Q 017428 224 DGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262 (371)
Q Consensus 224 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 262 (371)
-..+|+|+-.-. .. .+..+.++|++||.++..
T Consensus 213 ~~g~D~v~d~~g------~~-~~~~~~~~l~~~G~iv~~ 244 (321)
T 3tqh_A 213 STPVDAVIDLVG------GD-VGIQSIDCLKETGCIVSV 244 (321)
T ss_dssp CSCEEEEEESSC------HH-HHHHHGGGEEEEEEEEEC
T ss_pred ccCCCEEEECCC------cH-HHHHHHHhccCCCEEEEe
Confidence 146898875422 12 347889999999999875
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=91.54 E-value=0.71 Score=35.89 Aligned_cols=65 Identities=11% Similarity=0.128 Sum_probs=45.4
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----CCCCccceEE
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----FPDGQFDLVW 231 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~v~ 231 (371)
..+|+=+|+| .++..+++.+ +.+|+++|.+++.++.+++ ..+.++.+|..+.. ..-..+|+|+
T Consensus 6 ~~~v~I~G~G--~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~--------~~~~~~~gd~~~~~~l~~~~~~~~d~vi 75 (141)
T 3llv_A 6 RYEYIVIGSE--AAGVGLVRELTAAGKKVLAVDKSKEKIELLED--------EGFDAVIADPTDESFYRSLDLEGVSAVL 75 (141)
T ss_dssp CCSEEEECCS--HHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH--------TTCEEEECCTTCHHHHHHSCCTTCSEEE
T ss_pred CCEEEEECCC--HHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH--------CCCcEEECCCCCHHHHHhCCcccCCEEE
Confidence 4579999985 4666665544 7899999999988776654 24678889987642 1234688887
Q ss_pred cc
Q 017428 232 SM 233 (371)
Q Consensus 232 ~~ 233 (371)
..
T Consensus 76 ~~ 77 (141)
T 3llv_A 76 IT 77 (141)
T ss_dssp EC
T ss_pred Ee
Confidence 64
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=91.51 E-value=0.38 Score=43.67 Aligned_cols=56 Identities=20% Similarity=0.288 Sum_probs=40.3
Q ss_pred CCeEEEEcCCCC-CC-CCCCccceEEccccccCc--------------CCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 208 DKVSFQVGDALQ-QP-FPDGQFDLVWSMESGEHM--------------PDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 208 ~~v~~~~~d~~~-~~-~~~~~fD~v~~~~~l~~~--------------~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
.+..++.+|..+ +. +++++||+|++.--.... ......+.+++++|+|||.+++..
T Consensus 13 ~~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~ 84 (323)
T 1boo_A 13 SNGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDF 84 (323)
T ss_dssp SSEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEE
Confidence 357788888764 22 567889999986333211 124678899999999999999865
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=91.13 E-value=0.31 Score=44.52 Aligned_cols=69 Identities=12% Similarity=0.149 Sum_probs=51.4
Q ss_pred CCEEEEECCCcChHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---CCCCccceEEc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFG---AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---FPDGQFDLVWS 232 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~v~~ 232 (371)
..+|+|+-||.|.+...+.+. | ..|.++|+++...+.-+.++ +...+...|+.++. ++...+|+++.
T Consensus 3 ~~~~idLFaG~GG~~~G~~~a-G~~~~~v~a~e~d~~a~~ty~~N~------~~~~~~~~DI~~~~~~~~~~~~~D~l~g 75 (333)
T 4h0n_A 3 SHKILELYSGIGGMHCAWKES-GLDGEIVAAVDINTVANSVYKHNF------PETNLLNRNIQQLTPQVIKKWNVDTILM 75 (333)
T ss_dssp CEEEEEETCTTTHHHHHHHHH-TCSEEEEEEECCCHHHHHHHHHHC------TTSCEECCCGGGCCHHHHHHTTCCEEEE
T ss_pred CCEEEEECcCccHHHHHHHHc-CCCceEEEEEeCCHHHHHHHHHhC------CCCceeccccccCCHHHhccCCCCEEEe
Confidence 468999999999999998876 4 35789999999887777654 23456778887763 22336899986
Q ss_pred cc
Q 017428 233 ME 234 (371)
Q Consensus 233 ~~ 234 (371)
..
T Consensus 76 gp 77 (333)
T 4h0n_A 76 SP 77 (333)
T ss_dssp CC
T ss_pred cC
Confidence 43
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=91.00 E-value=1.5 Score=39.44 Aligned_cols=78 Identities=15% Similarity=0.087 Sum_probs=55.7
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CCC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDG 225 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~ 225 (371)
+.+||=.|++. .++..+++.+ |.+|++++.++..++.+.+.+...+...++.++..|+.+.. + ..+
T Consensus 8 ~k~vlVTGas~-gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 86 (319)
T 3ioy_A 8 GRTAFVTGGAN-GVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARFG 86 (319)
T ss_dssp TCEEEEETTTS-THHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CCEEEEcCCch-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhCC
Confidence 57888888664 4555555544 89999999999888877777766553347899999998742 0 024
Q ss_pred ccceEEcccccc
Q 017428 226 QFDLVWSMESGE 237 (371)
Q Consensus 226 ~fD~v~~~~~l~ 237 (371)
..|+++.+..+.
T Consensus 87 ~id~lv~nAg~~ 98 (319)
T 3ioy_A 87 PVSILCNNAGVN 98 (319)
T ss_dssp CEEEEEECCCCC
T ss_pred CCCEEEECCCcC
Confidence 689998876654
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=90.97 E-value=0.15 Score=47.59 Aligned_cols=101 Identities=16% Similarity=0.165 Sum_probs=57.2
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l 236 (371)
++.+|+=+|+|. |..+..++..+|++|+++|.++..++.+++.. +. .+.....+..++.-.-..+|+|+..-..
T Consensus 167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~---g~--~~~~~~~~~~~l~~~l~~aDvVi~~~~~ 241 (377)
T 2vhw_A 167 EPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEF---CG--RIHTRYSSAYELEGAVKRADLVIGAVLV 241 (377)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT---TT--SSEEEECCHHHHHHHHHHCSEEEECCCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhc---CC--eeEeccCCHHHHHHHHcCCCEEEECCCc
Confidence 478999999864 44444555555889999999998877665432 21 2222111111110001357988864322
Q ss_pred cCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 237 EHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 237 ~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
.....+.-+.+++.+.+||||.++.+.
T Consensus 242 p~~~t~~li~~~~l~~mk~g~~iV~va 268 (377)
T 2vhw_A 242 PGAKAPKLVSNSLVAHMKPGAVLVDIA 268 (377)
T ss_dssp TTSCCCCCBCHHHHTTSCTTCEEEEGG
T ss_pred CCCCCcceecHHHHhcCCCCcEEEEEe
Confidence 211111112456778899999887654
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.84 E-value=1.7 Score=37.80 Aligned_cols=104 Identities=19% Similarity=0.153 Sum_probs=63.8
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC-----CC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FP-----DG 225 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~-----~~ 225 (371)
+++||=.|+ +|..+..+++.+ |++|+.++.++...+.+.+.+.......++.++.+|+.+.. +. -+
T Consensus 7 ~k~vlVTGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 85 (267)
T 2gdz_A 7 GKVALVTGA-AQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG 85 (267)
T ss_dssp TCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCEEEEECC-CCcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHHcC
Confidence 567888885 556666666555 88999999998766554444432211236888999988742 10 14
Q ss_pred ccceEEccccccCcCCHHHH-----------HHHHHHhcCC-----CcEEEEEe
Q 017428 226 QFDLVWSMESGEHMPDKSKF-----------VSELARVTAP-----AGTIIIVT 263 (371)
Q Consensus 226 ~fD~v~~~~~l~~~~~~~~~-----------l~~~~~~Lkp-----gG~l~i~~ 263 (371)
..|+++.+.......++... .+.+.+.++. +|.++...
T Consensus 86 ~id~lv~~Ag~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~is 139 (267)
T 2gdz_A 86 RLDILVNNAGVNNEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMS 139 (267)
T ss_dssp CCCEEEECCCCCCSSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEEC
T ss_pred CCCEEEECCCCCChhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeC
Confidence 57999887665544454432 2344445542 57777654
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=90.66 E-value=2.5 Score=37.43 Aligned_cols=103 Identities=17% Similarity=0.166 Sum_probs=66.4
Q ss_pred CCEEEEECCCcC-hHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CC
Q 017428 159 PKNVVDVGCGIG-GSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PD 224 (371)
Q Consensus 159 ~~~VLDlG~GtG-~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~ 224 (371)
+++||=.|++.| ..+..+++.+ |++|+.++.++...+.+++.....+ ++.++.+|+.+.. + .-
T Consensus 31 gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~d~~~v~~~~~~~~~~~ 107 (293)
T 3grk_A 31 GKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEELG---AFVAGHCDVADAASIDAVFETLEKKW 107 (293)
T ss_dssp TCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHT---CEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC---CceEEECCCCCHHHHHHHHHHHHHhc
Confidence 678999987643 2444444433 8999999999766665555544433 5889999998742 0 12
Q ss_pred CccceEEccccccC-------c-----CCH-----------HHHHHHHHHhcCCCcEEEEEec
Q 017428 225 GQFDLVWSMESGEH-------M-----PDK-----------SKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 225 ~~fD~v~~~~~l~~-------~-----~~~-----------~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
+..|+++.+..+.. + .++ -.+++.+.+.++.+|.++.+..
T Consensus 108 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS 170 (293)
T 3grk_A 108 GKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTY 170 (293)
T ss_dssp SCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred CCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEee
Confidence 57899987765542 1 111 1345566677778888887653
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=90.65 E-value=1.9 Score=37.45 Aligned_cols=105 Identities=14% Similarity=0.151 Sum_probs=66.9
Q ss_pred CCEEEEECCCcC-hHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC-----C
Q 017428 159 PKNVVDVGCGIG-GSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FP-----D 224 (371)
Q Consensus 159 ~~~VLDlG~GtG-~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~-----~ 224 (371)
+++||=.|++.+ ..+..+++.+ |++|+.++.++...+.+++.....+- .++.++..|+.+.. +. .
T Consensus 7 ~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~~ 85 (266)
T 3oig_A 7 GRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDR-NDSIILPCDVTNDAEIETCFASIKEQV 85 (266)
T ss_dssp TCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSSS-CCCEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcCC-CCceEEeCCCCCHHHHHHHHHHHHHHh
Confidence 678998887632 2444444433 89999999887666666655554432 37899999998753 10 1
Q ss_pred CccceEEccccccC-------c--CCH---H-----------HHHHHHHHhcCCCcEEEEEec
Q 017428 225 GQFDLVWSMESGEH-------M--PDK---S-----------KFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 225 ~~fD~v~~~~~l~~-------~--~~~---~-----------~~l~~~~~~LkpgG~l~i~~~ 264 (371)
+..|+++.+..+.. + .+. . .+++.+...++++|.++.+..
T Consensus 86 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS 148 (266)
T 3oig_A 86 GVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTY 148 (266)
T ss_dssp SCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred CCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEec
Confidence 46898887655432 1 111 1 245666777888898887763
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=90.65 E-value=0.052 Score=48.81 Aligned_cols=90 Identities=19% Similarity=0.199 Sum_probs=60.3
Q ss_pred CCCEEEEECC--CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-CCCC--CCccceEEc
Q 017428 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-QPFP--DGQFDLVWS 232 (371)
Q Consensus 158 ~~~~VLDlG~--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~--~~~fD~v~~ 232 (371)
++.+||-+|+ |.|..+..+++..+++|++++.++...+.+++ .|.. ..+ |..+ ..+. -+.+|+|+-
T Consensus 125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----~ga~---~~~--~~~~~~~~~~~~~~~d~vid 195 (302)
T 1iz0_A 125 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLA----LGAE---EAA--TYAEVPERAKAWGGLDLVLE 195 (302)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHH----TTCS---EEE--EGGGHHHHHHHTTSEEEEEE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh----cCCC---EEE--ECCcchhHHHHhcCceEEEE
Confidence 4899999997 45778888888778999999999888777654 3321 112 2211 1100 046899886
Q ss_pred cccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 233 MESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 233 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
..- ..++.+.+.|+++|.++....
T Consensus 196 -~g~-------~~~~~~~~~l~~~G~~v~~g~ 219 (302)
T 1iz0_A 196 -VRG-------KEVEESLGLLAHGGRLVYIGA 219 (302)
T ss_dssp -CSC-------TTHHHHHTTEEEEEEEEEC--
T ss_pred -CCH-------HHHHHHHHhhccCCEEEEEeC
Confidence 321 246788899999999887643
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=90.64 E-value=2.9 Score=36.60 Aligned_cols=102 Identities=19% Similarity=0.141 Sum_probs=67.6
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCC------------HHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLS------------PVQAQRANALAAARGLADKVSFQVGDALQQP-- 221 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s------------~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-- 221 (371)
+++||=.|++ |..+..+++.+ |++|+.+|.+ ...++.+...+...+ .++.++..|+.+..
T Consensus 10 gk~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v 86 (287)
T 3pxx_A 10 DKVVLVTGGA-RGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG--RKAYTAEVDVRDRAAV 86 (287)
T ss_dssp TCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT--SCEEEEECCTTCHHHH
T ss_pred CCEEEEeCCC-ChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcC--CceEEEEccCCCHHHH
Confidence 6788888865 45555555554 8999999987 666666666665554 57999999998742
Q ss_pred ---CC-----CCccceEEccccccCc------CCHH-----------HHHHHHHHhcCCCcEEEEEe
Q 017428 222 ---FP-----DGQFDLVWSMESGEHM------PDKS-----------KFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 222 ---~~-----~~~fD~v~~~~~l~~~------~~~~-----------~~l~~~~~~LkpgG~l~i~~ 263 (371)
+. -+..|+++.+..+... .++. .+++.+...++.+|.++...
T Consensus 87 ~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is 153 (287)
T 3pxx_A 87 SRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTG 153 (287)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEEC
T ss_pred HHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEec
Confidence 10 1478998877655332 1122 34456667777888887764
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=90.58 E-value=0.35 Score=45.26 Aligned_cols=98 Identities=14% Similarity=0.246 Sum_probs=59.5
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC------CC-CCC------
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL------QQ-PFP------ 223 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~------~~-~~~------ 223 (371)
++.+|+=+|+|. |..+..++..+|++|+++|.++..++.+++ .| ..+...+.. .. .+.
T Consensus 189 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~----~G----~~~~~~~~~~~~d~~~~~~ya~e~s~~ 260 (405)
T 4dio_A 189 PAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVAS----LG----AKFIAVEDEEFKAAETAGGYAKEMSGE 260 (405)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHH----TT----CEECCCCC-----------------CH
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH----cC----Cceeecccccccccccccchhhhcchh
Confidence 478999999985 666666777779999999999987777654 22 233322211 00 000
Q ss_pred ------------CCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 224 ------------DGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 224 ------------~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
-...|+|+..-.+..-..+.-+-+++.+.+|||..++-..
T Consensus 261 ~~~~~~~~l~e~l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA 312 (405)
T 4dio_A 261 YQVKQAALVAEHIAKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLA 312 (405)
T ss_dssp HHHHHHHHHHHHHHTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETT
T ss_pred hhhhhHhHHHHHhcCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEe
Confidence 0357998864322211122223468888999998777543
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.34 E-value=0.64 Score=41.63 Aligned_cols=69 Identities=20% Similarity=0.162 Sum_probs=51.5
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCE---EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---CC-CCccceE
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAK---CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---FP-DGQFDLV 230 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~-~~~fD~v 230 (371)
...+|+|+-||.|.+...+.+. |.+ |.++|+++...+..+.+. +...+..+|+.++. ++ .+.+|++
T Consensus 15 ~~~~vidLFaG~GG~~~g~~~a-G~~~~~v~a~E~d~~a~~ty~~N~------~~~~~~~~DI~~i~~~~i~~~~~~Dll 87 (295)
T 2qrv_A 15 KPIRVLSLFDGIATGLLVLKDL-GIQVDRYIASEVCEDSITVGMVRH------QGKIMYVGDVRSVTQKHIQEWGPFDLV 87 (295)
T ss_dssp CCEEEEEETCTTTHHHHHHHHT-TBCEEEEEEECCCHHHHHHHHHHT------TTCEEEECCGGGCCHHHHHHTCCCSEE
T ss_pred CCCEEEEeCcCccHHHHHHHHC-CCccceEEEEECCHHHHHHHHHhC------CCCceeCCChHHccHHHhcccCCcCEE
Confidence 4679999999999999888775 443 589999998877666543 24567889988764 11 1368999
Q ss_pred Ecc
Q 017428 231 WSM 233 (371)
Q Consensus 231 ~~~ 233 (371)
+..
T Consensus 88 ~gg 90 (295)
T 2qrv_A 88 IGG 90 (295)
T ss_dssp EEC
T ss_pred Eec
Confidence 864
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=90.27 E-value=1.4 Score=40.89 Aligned_cols=97 Identities=18% Similarity=0.102 Sum_probs=67.5
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCC-CeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLAD-KVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
+.+||.|+.+.|.++..++.. .++.+.-|-......+.++..+++++ ++.+... .... .+.||+|+.... -
T Consensus 39 ~~~~~~~~d~~gal~~~~~~~---~~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~~-~~~~---~~~~~~v~~~lp-k 110 (375)
T 4dcm_A 39 RGPVLILNDAFGALSCALAEH---KPYSIGDSYISELATRENLRLNGIDESSVKFLDS-TADY---PQQPGVVLIKVP-K 110 (375)
T ss_dssp CSCEEEECCSSSHHHHHTGGG---CCEEEESCHHHHHHHHHHHHHTTCCGGGSEEEET-TSCC---CSSCSEEEEECC-S
T ss_pred CCCEEEECCCCCHHHHhhccC---CceEEEhHHHHHHHHHHHHHHcCCCccceEeccc-cccc---ccCCCEEEEEcC-C
Confidence 568999999999999888753 34556446666667777888888764 3655432 2222 367998876432 2
Q ss_pred CcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 238 HMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 238 ~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+.......+..+...|+||+.+++..
T Consensus 111 ~~~~l~~~L~~l~~~l~~~~~i~~~g 136 (375)
T 4dcm_A 111 TLALLEQQLRALRKVVTSDTRIIAGA 136 (375)
T ss_dssp CHHHHHHHHHHHHTTCCTTSEEEEEE
T ss_pred CHHHHHHHHHHHHhhCCCCCEEEEEe
Confidence 33345677888999999999998765
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=90.26 E-value=0.17 Score=46.91 Aligned_cols=101 Identities=17% Similarity=0.179 Sum_probs=58.2
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l 236 (371)
++.+||=+|+|. |..+..++...|++|+++|.++..++.+++.... .+.....+..++.-.-..+|+|+..-..
T Consensus 166 ~~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~DvVI~~~~~ 240 (361)
T 1pjc_A 166 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGS-----RVELLYSNSAEIETAVAEADLLIGAVLV 240 (361)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG-----GSEEEECCHHHHHHHHHTCSEEEECCCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCc-----eeEeeeCCHHHHHHHHcCCCEEEECCCc
Confidence 358999999863 4445555555588999999999888777654421 2222221111110001258999865433
Q ss_pred cCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 237 EHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 237 ~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
.....+.-+.+...+.++|||.++...
T Consensus 241 ~~~~~~~li~~~~~~~~~~g~~ivdv~ 267 (361)
T 1pjc_A 241 PGRRAPILVPASLVEQMRTGSVIVDVA 267 (361)
T ss_dssp TTSSCCCCBCHHHHTTSCTTCEEEETT
T ss_pred CCCCCCeecCHHHHhhCCCCCEEEEEe
Confidence 221111112345667899999877644
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=90.17 E-value=0.86 Score=42.08 Aligned_cols=93 Identities=12% Similarity=0.076 Sum_probs=60.9
Q ss_pred CCCCEEEEECCC--cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----CCCCCccce
Q 017428 157 KRPKNVVDVGCG--IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-----PFPDGQFDL 229 (371)
Q Consensus 157 ~~~~~VLDlG~G--tG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~fD~ 229 (371)
.++.+||=+|++ .|..+..+++..|++|+++. ++..++.+++ .|. -.++...-.+. ....+.+|+
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~-~~~~~~~~~~----lGa---~~vi~~~~~~~~~~v~~~t~g~~d~ 234 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC-SPHNFDLAKS----RGA---EEVFDYRAPNLAQTIRTYTKNNLRY 234 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHH----TTC---SEEEETTSTTHHHHHHHHTTTCCCE
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-CHHHHHHHHH----cCC---cEEEECCCchHHHHHHHHccCCccE
Confidence 358899999983 68889999988899999885 7777776654 443 12222211111 012345998
Q ss_pred EEccccccCcCCHHHHHHHHHHhc-CCCcEEEEEe
Q 017428 230 VWSMESGEHMPDKSKFVSELARVT-APAGTIIIVT 263 (371)
Q Consensus 230 v~~~~~l~~~~~~~~~l~~~~~~L-kpgG~l~i~~ 263 (371)
|+-.-. . ...+..+.+.| ++||++++..
T Consensus 235 v~d~~g-----~-~~~~~~~~~~l~~~~G~iv~~g 263 (371)
T 3gqv_A 235 ALDCIT-----N-VESTTFCFAAIGRAGGHYVSLN 263 (371)
T ss_dssp EEESSC-----S-HHHHHHHHHHSCTTCEEEEESS
T ss_pred EEECCC-----c-hHHHHHHHHHhhcCCCEEEEEe
Confidence 874321 2 34577888888 6999998764
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=90.11 E-value=0.59 Score=42.30 Aligned_cols=93 Identities=17% Similarity=0.152 Sum_probs=61.2
Q ss_pred CC-EEEEECC--CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC-CC-C-CCCCCccceEEc
Q 017428 159 PK-NVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA-LQ-Q-PFPDGQFDLVWS 232 (371)
Q Consensus 159 ~~-~VLDlG~--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~-~-~~~~~~fD~v~~ 232 (371)
+. +||-+|+ |.|..+..+++..+++|++++.+++.++.+++ .|.. ..+-..+. .+ . ....+.+|+|+-
T Consensus 150 g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~----lGa~--~v~~~~~~~~~~~~~~~~~~~d~vid 223 (330)
T 1tt7_A 150 EKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQ----LGAS--EVISREDVYDGTLKALSKQQWQGAVD 223 (330)
T ss_dssp GGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHH----HTCS--EEEEHHHHCSSCCCSSCCCCEEEEEE
T ss_pred CCceEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cCCc--EEEECCCchHHHHHHhhcCCccEEEE
Confidence 54 8999997 45778888888778999999999887777764 2321 11111111 11 1 122346898875
Q ss_pred cccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 233 MESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 233 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
.-. . ..+..+.+.|++||.+++...
T Consensus 224 ~~g-----~--~~~~~~~~~l~~~G~iv~~G~ 248 (330)
T 1tt7_A 224 PVG-----G--KQLASLLSKIQYGGSVAVSGL 248 (330)
T ss_dssp SCC-----T--HHHHHHHTTEEEEEEEEECCC
T ss_pred CCc-----H--HHHHHHHHhhcCCCEEEEEec
Confidence 432 2 357888999999999988653
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=90.01 E-value=0.89 Score=43.12 Aligned_cols=96 Identities=16% Similarity=0.104 Sum_probs=62.7
Q ss_pred CCCCEEEEECC--CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--------------
Q 017428 157 KRPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-------------- 220 (371)
Q Consensus 157 ~~~~~VLDlG~--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-------------- 220 (371)
.++.+||=.|+ |.|..+..+++..+++|++++.++..++.+++ .|...-+.....|..+.
T Consensus 219 ~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 294 (447)
T 4a0s_A 219 KQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRA----LGCDLVINRAELGITDDIADDPRRVVETGRK 294 (447)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTCCCEEEHHHHTCCTTGGGCHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh----cCCCEEEecccccccccccccccccchhhhH
Confidence 35899999996 34778888888779999999999988887754 34321111111121100
Q ss_pred ------CCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 221 ------PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 221 ------~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
......+|+|+-.-. . ..++.+.+.|++||.+++..
T Consensus 295 ~~~~v~~~~g~g~Dvvid~~G-----~--~~~~~~~~~l~~~G~iv~~G 336 (447)
T 4a0s_A 295 LAKLVVEKAGREPDIVFEHTG-----R--VTFGLSVIVARRGGTVVTCG 336 (447)
T ss_dssp HHHHHHHHHSSCCSEEEECSC-----H--HHHHHHHHHSCTTCEEEESC
T ss_pred HHHHHHHHhCCCceEEEECCC-----c--hHHHHHHHHHhcCCEEEEEe
Confidence 001246898875432 1 35788889999999999865
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=89.93 E-value=1.6 Score=37.93 Aligned_cols=104 Identities=13% Similarity=0.025 Sum_probs=66.6
Q ss_pred CCCEEEEECCC-cChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----C
Q 017428 158 RPKNVVDVGCG-IGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----P 223 (371)
Q Consensus 158 ~~~~VLDlG~G-tG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 223 (371)
++++||=.|++ +|..+..+++.+ +++|+.++.+....+.+++.....+ ++.++..|+.+.. + .
T Consensus 13 ~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~~~~~v~~~~~~~~~~ 89 (271)
T 3ek2_A 13 DGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFG---SELVFPCDVADDAQIDALFASLKTH 89 (271)
T ss_dssp TTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTT---CCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHcC---CcEEEECCCCCHHHHHHHHHHHHHH
Confidence 47889988874 355666666555 8899999988665555555544433 5788999998742 0 1
Q ss_pred CCccceEEccccccCc----------CC---HH-----------HHHHHHHHhcCCCcEEEEEec
Q 017428 224 DGQFDLVWSMESGEHM----------PD---KS-----------KFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 224 ~~~fD~v~~~~~l~~~----------~~---~~-----------~~l~~~~~~LkpgG~l~i~~~ 264 (371)
.+..|+++.+..+... .+ +. .+++.+...++++|.++....
T Consensus 90 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS 154 (271)
T 3ek2_A 90 WDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSY 154 (271)
T ss_dssp CSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred cCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEec
Confidence 2478999877654321 11 11 344556666777888777653
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=89.84 E-value=0.24 Score=45.94 Aligned_cols=101 Identities=16% Similarity=0.138 Sum_probs=55.1
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l 236 (371)
++.+|+=+|+|. |..+..++...|++|+++|.++..++.+++.. +. .+.....+..++.-.-..+|+|+..-..
T Consensus 165 ~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~---g~--~~~~~~~~~~~l~~~~~~~DvVi~~~g~ 239 (369)
T 2eez_A 165 APASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVF---GG--RVITLTATEANIKKSVQHADLLIGAVLV 239 (369)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT---TT--SEEEEECCHHHHHHHHHHCSEEEECCC-
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhc---Cc--eEEEecCCHHHHHHHHhCCCEEEECCCC
Confidence 468999999853 33344444445899999999998776655422 21 2322222211111001357988765433
Q ss_pred cCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 237 EHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 237 ~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
.....+.-+.+++.+.+++||.++...
T Consensus 240 ~~~~~~~li~~~~l~~mk~gg~iV~v~ 266 (369)
T 2eez_A 240 PGAKAPKLVTRDMLSLMKEGAVIVDVA 266 (369)
T ss_dssp ------CCSCHHHHTTSCTTCEEEECC
T ss_pred CccccchhHHHHHHHhhcCCCEEEEEe
Confidence 211111112466778899999877654
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=89.83 E-value=3.3 Score=36.60 Aligned_cols=102 Identities=18% Similarity=0.176 Sum_probs=64.7
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHH-HHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPV-QAQRANALAAARGLADKVSFQVGDALQQP-----F-----PD 224 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~-~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~ 224 (371)
+++||=.|++ |..+..+++.+ |++|+.++.+.. ..+...+.....+ .++.++..|+.+.. + .-
T Consensus 47 gk~vlVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 123 (291)
T 3ijr_A 47 GKNVLITGGD-SGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEG--VKCVLLPGDLSDEQHCKDIVQETVRQL 123 (291)
T ss_dssp TCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTT--CCEEEEESCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 6788888855 55555555555 889999998765 3444444444443 57999999998742 1 01
Q ss_pred CccceEEccccccCc----C-----CHH-----------HHHHHHHHhcCCCcEEEEEe
Q 017428 225 GQFDLVWSMESGEHM----P-----DKS-----------KFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 225 ~~fD~v~~~~~l~~~----~-----~~~-----------~~l~~~~~~LkpgG~l~i~~ 263 (371)
+..|+++.+...... . ++. .+++.+.+.++.+|.++.+.
T Consensus 124 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~is 182 (291)
T 3ijr_A 124 GSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTA 182 (291)
T ss_dssp SSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEEC
T ss_pred CCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEe
Confidence 468998876443221 1 111 35566677778889877764
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=89.74 E-value=2.3 Score=35.98 Aligned_cols=75 Identities=16% Similarity=0.143 Sum_probs=50.7
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCe-EEEEcCCCC-CCCCCCccceEEcc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKV-SFQVGDALQ-QPFPDGQFDLVWSM 233 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v-~~~~~d~~~-~~~~~~~fD~v~~~ 233 (371)
+++||=.| |+|..+..+++.+ +.+|++++-++...+.... .++ .++.+|+.+ +.-.-+..|+|+.+
T Consensus 21 ~~~ilVtG-atG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~--------~~~~~~~~~Dl~~~~~~~~~~~D~vi~~ 91 (236)
T 3e8x_A 21 GMRVLVVG-ANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRE--------RGASDIVVANLEEDFSHAFASIDAVVFA 91 (236)
T ss_dssp CCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH--------TTCSEEEECCTTSCCGGGGTTCSEEEEC
T ss_pred CCeEEEEC-CCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHh--------CCCceEEEcccHHHHHHHHcCCCEEEEC
Confidence 78899887 5677777776665 7899999998876544322 257 899999872 11112468999877
Q ss_pred ccccCcCCH
Q 017428 234 ESGEHMPDK 242 (371)
Q Consensus 234 ~~l~~~~~~ 242 (371)
.......++
T Consensus 92 ag~~~~~~~ 100 (236)
T 3e8x_A 92 AGSGPHTGA 100 (236)
T ss_dssp CCCCTTSCH
T ss_pred CCCCCCCCc
Confidence 665543333
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=89.57 E-value=1.1 Score=43.07 Aligned_cols=88 Identities=18% Similarity=0.176 Sum_probs=56.1
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l 236 (371)
++.+|+=+|+|. |......++.+|++|+++|.++...+.+++ .| +.+ .++.+. -...|+|+..-.-
T Consensus 273 ~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~----~G----a~~--~~l~e~---l~~aDvVi~atgt 339 (494)
T 3ce6_A 273 GGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMM----EG----FDV--VTVEEA---IGDADIVVTATGN 339 (494)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----TT----CEE--CCHHHH---GGGCSEEEECSSS
T ss_pred CcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cC----CEE--ecHHHH---HhCCCEEEECCCC
Confidence 488999999864 444445555558999999999987766543 23 222 232221 1457998875433
Q ss_pred cCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 237 EHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 237 ~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
.++-+ .+..+.+||||+++.+.
T Consensus 340 ~~~i~-----~~~l~~mk~ggilvnvG 361 (494)
T 3ce6_A 340 KDIIM-----LEHIKAMKDHAILGNIG 361 (494)
T ss_dssp SCSBC-----HHHHHHSCTTCEEEECS
T ss_pred HHHHH-----HHHHHhcCCCcEEEEeC
Confidence 23212 25667799999988754
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=89.55 E-value=0.14 Score=47.49 Aligned_cols=97 Identities=20% Similarity=0.268 Sum_probs=58.6
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC--C----------------
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA--L---------------- 218 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~--~---------------- 218 (371)
++.+|+=+|+|. |..+..++..+|++|+++|.++..++.+++ .| .++...+. .
T Consensus 183 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~----lG----a~~~~l~~~~~~~~gya~~~~~~~~~~ 254 (381)
T 3p2y_A 183 KPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRS----VG----AQWLDLGIDAAGEGGYARELSEAERAQ 254 (381)
T ss_dssp CCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHH----TT----CEECCCC-------------CHHHHHH
T ss_pred CCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cC----CeEEeccccccccccchhhhhHHHHhh
Confidence 478999999985 556666666669999999999987776654 22 33332211 0
Q ss_pred ---CCCCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEE
Q 017428 219 ---QQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262 (371)
Q Consensus 219 ---~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 262 (371)
.+.-.-...|+|+..-.+..-..+.-+-+++.+.+|||+.++-.
T Consensus 255 ~~~~l~e~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDv 301 (381)
T 3p2y_A 255 QQQALEDAITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDL 301 (381)
T ss_dssp HHHHHHHHHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEET
T ss_pred hHHHHHHHHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEE
Confidence 00000156899986532211111112346888899998876654
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.80 E-value=0.21 Score=46.33 Aligned_cols=92 Identities=14% Similarity=0.124 Sum_probs=58.7
Q ss_pred CCCCEEEEEC-CC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC-----CCCccce
Q 017428 157 KRPKNVVDVG-CG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF-----PDGQFDL 229 (371)
Q Consensus 157 ~~~~~VLDlG-~G-tG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----~~~~fD~ 229 (371)
.++.+||=+| +| .|..+..+++..+++|++++ ++...+.+++ .|.. .++ |..+..+ ....+|+
T Consensus 182 ~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~-~~~~~~~~~~----lGa~---~v~--~~~~~~~~~~~~~~~g~D~ 251 (375)
T 2vn8_A 182 CTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC-SQDASELVRK----LGAD---DVI--DYKSGSVEEQLKSLKPFDF 251 (375)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHH----TTCS---EEE--ETTSSCHHHHHHTSCCBSE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEe-ChHHHHHHHH----cCCC---EEE--ECCchHHHHHHhhcCCCCE
Confidence 3589999999 34 57788888887789999998 6666655533 3421 122 2222111 1146898
Q ss_pred EEccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 230 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
|+-.-. .....+....+.|++||.++...
T Consensus 252 vid~~g-----~~~~~~~~~~~~l~~~G~iv~~g 280 (375)
T 2vn8_A 252 ILDNVG-----GSTETWAPDFLKKWSGATYVTLV 280 (375)
T ss_dssp EEESSC-----TTHHHHGGGGBCSSSCCEEEESC
T ss_pred EEECCC-----ChhhhhHHHHHhhcCCcEEEEeC
Confidence 875432 22234577788999999998754
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=88.72 E-value=2.2 Score=34.64 Aligned_cols=91 Identities=21% Similarity=0.235 Sum_probs=53.7
Q ss_pred CCEEEEECCCc-ChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----C-CCCccceEE
Q 017428 159 PKNVVDVGCGI-GGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----F-PDGQFDLVW 231 (371)
Q Consensus 159 ~~~VLDlG~Gt-G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~-~~~~fD~v~ 231 (371)
+.+|+=+|+|. |......+... +..|+++|.+++.++.+++ . .+.++.+|..+.. . .-..+|+|+
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~----~----g~~~~~gd~~~~~~l~~~~~~~~ad~vi 110 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRS----E----GRNVISGDATDPDFWERILDTGHVKLVL 110 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHH----T----TCCEEECCTTCHHHHHTBCSCCCCCEEE
T ss_pred CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHH----C----CCCEEEcCCCCHHHHHhccCCCCCCEEE
Confidence 56899998763 33322233334 6789999999987766543 2 3456777775521 1 134688887
Q ss_pred ccccccCcCCH--HHHHHHHHHhcCCCcEEEEE
Q 017428 232 SMESGEHMPDK--SKFVSELARVTAPAGTIIIV 262 (371)
Q Consensus 232 ~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~ 262 (371)
... ++. ...+-...+.+.|++.++..
T Consensus 111 ~~~-----~~~~~~~~~~~~~~~~~~~~~ii~~ 138 (183)
T 3c85_A 111 LAM-----PHHQGNQTALEQLQRRNYKGQIAAI 138 (183)
T ss_dssp ECC-----SSHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred EeC-----CChHHHHHHHHHHHHHCCCCEEEEE
Confidence 642 222 22223345556777777764
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=88.69 E-value=2.2 Score=36.89 Aligned_cols=100 Identities=15% Similarity=0.124 Sum_probs=65.3
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC----------CCC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF----------PDG 225 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------~~~ 225 (371)
+++||=.|++ |..+..+++.+ |++|+.+|.++..++...+.+ ..++.++..|+.+..- .-+
T Consensus 8 gk~~lVTGas-~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 81 (255)
T 4eso_A 8 GKKAIVIGGT-HGMGLATVRRLVEGGAEVLLTGRNESNIARIREEF-----GPRVHALRSDIADLNEIAVLGAAAGQTLG 81 (255)
T ss_dssp TCEEEEETCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----GGGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCcceEEEccCCCHHHHHHHHHHHHHHhC
Confidence 6788888855 45555555554 899999999988776655543 2468899999987420 014
Q ss_pred ccceEEccccccCcC-----C---HH-----------HHHHHHHHhcCCCcEEEEEec
Q 017428 226 QFDLVWSMESGEHMP-----D---KS-----------KFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 226 ~fD~v~~~~~l~~~~-----~---~~-----------~~l~~~~~~LkpgG~l~i~~~ 264 (371)
..|+++.+..+.... + +. .+.+.+...++.+|.++....
T Consensus 82 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS 139 (255)
T 4eso_A 82 AIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSS 139 (255)
T ss_dssp SEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECC
Confidence 689988766544321 1 11 244556666777888877653
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=88.62 E-value=3.7 Score=36.33 Aligned_cols=103 Identities=20% Similarity=0.242 Sum_probs=66.4
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCC--HHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----C
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLS--PVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----P 223 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s--~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 223 (371)
+++||=.|++ |..+..+++.+ |++|+.++.+ ....+...+.+...+ .++.++.+|+.+.. + .
T Consensus 49 ~k~vlVTGas-~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~ 125 (294)
T 3r3s_A 49 DRKALVTGGD-SGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECG--RKAVLLPGDLSDESFARSLVHKAREA 125 (294)
T ss_dssp TCEEEEETTT-SHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTT--CCEEECCCCTTSHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 6788888854 55566666555 8899999886 344555555555544 57889999987742 0 0
Q ss_pred CCccceEEccccccC-cC-----C---HH-----------HHHHHHHHhcCCCcEEEEEec
Q 017428 224 DGQFDLVWSMESGEH-MP-----D---KS-----------KFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 224 ~~~fD~v~~~~~l~~-~~-----~---~~-----------~~l~~~~~~LkpgG~l~i~~~ 264 (371)
-+..|+++.+..... .. + +. .+++.+...++.+|.++.+..
T Consensus 126 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS 186 (294)
T 3r3s_A 126 LGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSS 186 (294)
T ss_dssp HTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECC
T ss_pred cCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECC
Confidence 146899887765432 11 1 11 345566677888898887753
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=88.50 E-value=1.9 Score=38.22 Aligned_cols=103 Identities=20% Similarity=0.175 Sum_probs=66.0
Q ss_pred CCEEEEECCCc-ChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC-----C
Q 017428 159 PKNVVDVGCGI-GGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FP-----D 224 (371)
Q Consensus 159 ~~~VLDlG~Gt-G~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~-----~ 224 (371)
+++||=.|++. ...+..+++.+ |++|+.+|.++...+.+++.....+ ++.++.+|+.+.. +. -
T Consensus 30 ~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~d~~~v~~~~~~~~~~~ 106 (296)
T 3k31_A 30 GKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESLG---VKLTVPCDVSDAESVDNMFKVLAEEW 106 (296)
T ss_dssp TCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHHT---CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcC---CeEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 67899898754 34555555544 8999999999766555555544443 4688999998742 10 1
Q ss_pred CccceEEccccccCc---------C---CHH-----------HHHHHHHHhcCCCcEEEEEec
Q 017428 225 GQFDLVWSMESGEHM---------P---DKS-----------KFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 225 ~~fD~v~~~~~l~~~---------~---~~~-----------~~l~~~~~~LkpgG~l~i~~~ 264 (371)
+..|+++.+..+... . ++. .+.+.+...++.+|.++.+..
T Consensus 107 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS 169 (296)
T 3k31_A 107 GSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSY 169 (296)
T ss_dssp SCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred CCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEe
Confidence 478999877655321 1 111 345556667777888887653
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=88.16 E-value=1.4 Score=38.16 Aligned_cols=102 Identities=16% Similarity=0.130 Sum_probs=64.7
Q ss_pred CCEEEEECCCcChHHHHHHHHc----CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC-----C
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF----GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FP-----D 224 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~-----~ 224 (371)
+.+||=.| |+|.++..+++.+ +++|++++.++...+...+.+...+ .++.++.+|+.+.. +. .
T Consensus 4 ~k~vlITG-asggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 80 (276)
T 1wma_A 4 IHVALVTG-GNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG--LSPRFHQLDIDDLQSIRALRDFLRKEY 80 (276)
T ss_dssp CCEEEESS-CSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcC--CeeEEEECCCCCHHHHHHHHHHHHHhc
Confidence 56777666 5566666655433 6899999999887776666665544 47889999988742 00 1
Q ss_pred CccceEEccccccCc--------CCHH-----------HHHHHHHHhcCCCcEEEEEe
Q 017428 225 GQFDLVWSMESGEHM--------PDKS-----------KFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 225 ~~fD~v~~~~~l~~~--------~~~~-----------~~l~~~~~~LkpgG~l~i~~ 263 (371)
+.+|+|+.+...... .++. .+++.+.+.++++|.++++.
T Consensus 81 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~s 138 (276)
T 1wma_A 81 GGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS 138 (276)
T ss_dssp SSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred CCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEEC
Confidence 368988876543321 1111 24455566666678877764
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=88.12 E-value=7.1 Score=33.98 Aligned_cols=103 Identities=18% Similarity=0.164 Sum_probs=66.1
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCC-HHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLS-PVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PD 224 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~ 224 (371)
+++||=.|++ |..+..+++.+ |++|+.++.. ....+...+.+...+ .++.++.+|+.+.. + .-
T Consensus 31 gk~~lVTGas-~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 107 (271)
T 3v2g_A 31 GKTAFVTGGS-RGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAG--GRAVAIRADNRDAEAIEQAIRETVEAL 107 (271)
T ss_dssp TCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 6788888865 45555555554 8899988654 455555555555544 57899999998742 1 01
Q ss_pred CccceEEccccccCcC--------CHH-----------HHHHHHHHhcCCCcEEEEEec
Q 017428 225 GQFDLVWSMESGEHMP--------DKS-----------KFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 225 ~~fD~v~~~~~l~~~~--------~~~-----------~~l~~~~~~LkpgG~l~i~~~ 264 (371)
+..|+++.+..+.... ++. .+++.+.+.++.+|.++....
T Consensus 108 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS 166 (271)
T 3v2g_A 108 GGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGS 166 (271)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred CCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 4689988776543321 111 345666777888898887753
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=87.84 E-value=7.3 Score=29.46 Aligned_cols=90 Identities=18% Similarity=0.111 Sum_probs=52.8
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----CCCCccceEE
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----FPDGQFDLVW 231 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~v~ 231 (371)
+++|+=+|+ |..+..+++.+ +.+|+++|.++..++..++. . ++.++.+|..+.. ..-..+|+|+
T Consensus 4 ~m~i~IiG~--G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~---~----~~~~~~~d~~~~~~l~~~~~~~~d~vi 74 (140)
T 1lss_A 4 GMYIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE---I----DALVINGDCTKIKTLEDAGIEDADMYI 74 (140)
T ss_dssp -CEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---C----SSEEEESCTTSHHHHHHTTTTTCSEEE
T ss_pred CCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHh---c----CcEEEEcCCCCHHHHHHcCcccCCEEE
Confidence 578998887 55555555544 78999999998876554431 1 3556777765421 1124689887
Q ss_pred ccccccCcCCHHHHHHHHHHhcCCCcEEEE
Q 017428 232 SMESGEHMPDKSKFVSELARVTAPAGTIII 261 (371)
Q Consensus 232 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i 261 (371)
..-.- ......+..+.+.+.++ .+++
T Consensus 75 ~~~~~---~~~~~~~~~~~~~~~~~-~ii~ 100 (140)
T 1lss_A 75 AVTGK---EEVNLMSSLLAKSYGIN-KTIA 100 (140)
T ss_dssp ECCSC---HHHHHHHHHHHHHTTCC-CEEE
T ss_pred EeeCC---chHHHHHHHHHHHcCCC-EEEE
Confidence 65311 11223445556667775 4443
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=87.66 E-value=0.3 Score=45.52 Aligned_cols=42 Identities=21% Similarity=0.369 Sum_probs=32.4
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANA 199 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~ 199 (371)
++.+|+=+|+|. |..+..+++.+|++|+++|.++...+.+++
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~ 213 (384)
T 1l7d_A 171 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVES 213 (384)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 478999999985 555666677678899999999876665543
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=87.62 E-value=2.1 Score=37.06 Aligned_cols=76 Identities=24% Similarity=0.133 Sum_probs=52.1
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeC-CHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC-----C
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITL-SPVQAQRANALAAARGLADKVSFQVGDALQQP-----FP-----D 224 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~-s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~-----~ 224 (371)
+++||=.| |+|..+..+++.+ +++|++++. ++..++...+.+...+ .++.++.+|+.+.. +. -
T Consensus 21 ~k~vlItG-asggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 97 (274)
T 1ja9_A 21 GKVALTTG-AGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLG--AQGVAIQADISKPSEVVALFDKAVSHF 97 (274)
T ss_dssp TCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 56788666 5677777777665 789999998 7776666555555444 47889999988742 10 1
Q ss_pred CccceEEcccccc
Q 017428 225 GQFDLVWSMESGE 237 (371)
Q Consensus 225 ~~fD~v~~~~~l~ 237 (371)
+..|+|+.+....
T Consensus 98 ~~~d~vi~~Ag~~ 110 (274)
T 1ja9_A 98 GGLDFVMSNSGME 110 (274)
T ss_dssp SCEEEEECCCCCC
T ss_pred CCCCEEEECCCCC
Confidence 3689988765543
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=87.45 E-value=5.6 Score=35.19 Aligned_cols=75 Identities=20% Similarity=0.184 Sum_probs=51.6
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCC------------HHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLS------------PVQAQRANALAAARGLADKVSFQVGDALQQP-- 221 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s------------~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-- 221 (371)
+++||=.|++. ..+..+++.+ |++|+.+|.+ +..++.+.+.+...+ .++.++..|+.+..
T Consensus 28 gk~~lVTGas~-GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v 104 (299)
T 3t7c_A 28 GKVAFITGAAR-GQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALG--RRIIASQVDVRDFDAM 104 (299)
T ss_dssp TCEEEEESTTS-HHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHH
T ss_pred CCEEEEECCCC-HHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHH
Confidence 67888888655 4555555544 8999999987 666666666665554 57999999998742
Q ss_pred ---C-----CCCccceEEccccc
Q 017428 222 ---F-----PDGQFDLVWSMESG 236 (371)
Q Consensus 222 ---~-----~~~~fD~v~~~~~l 236 (371)
+ .-+..|+++.+..+
T Consensus 105 ~~~~~~~~~~~g~iD~lv~nAg~ 127 (299)
T 3t7c_A 105 QAAVDDGVTQLGRLDIVLANAAL 127 (299)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHhCCCCEEEECCCC
Confidence 1 11478998876554
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=87.08 E-value=0.26 Score=46.26 Aligned_cols=41 Identities=22% Similarity=0.387 Sum_probs=32.3
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRAN 198 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~ 198 (371)
++.+|+=+|+|. |..+..++..+|++|+++|.++...+.++
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~ 212 (401)
T 1x13_A 171 PPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQ 212 (401)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence 478999999985 55566667767899999999987766653
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=86.90 E-value=2.5 Score=39.64 Aligned_cols=90 Identities=16% Similarity=0.157 Sum_probs=60.8
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----CCCCccceEE
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----FPDGQFDLVW 231 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~v~ 231 (371)
..+|+=+|+| .++..+++.+ +..|+++|.+++.++.+++ . .+.++.+|+.+.. ..-...|+|+
T Consensus 4 ~~~viIiG~G--r~G~~va~~L~~~g~~vvvId~d~~~v~~~~~----~----g~~vi~GDat~~~~L~~agi~~A~~vi 73 (413)
T 3l9w_A 4 GMRVIIAGFG--RFGQITGRLLLSSGVKMVVLDHDPDHIETLRK----F----GMKVFYGDATRMDLLESAGAAKAEVLI 73 (413)
T ss_dssp CCSEEEECCS--HHHHHHHHHHHHTTCCEEEEECCHHHHHHHHH----T----TCCCEESCTTCHHHHHHTTTTTCSEEE
T ss_pred CCeEEEECCC--HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHh----C----CCeEEEcCCCCHHHHHhcCCCccCEEE
Confidence 4678888874 4555555544 7899999999999887764 2 3567899988742 2235678877
Q ss_pred ccccccCcCCH--HHHHHHHHHhcCCCcEEEEEe
Q 017428 232 SMESGEHMPDK--SKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 232 ~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+.. ++. ...+-...+.+.|...++.-.
T Consensus 74 v~~-----~~~~~n~~i~~~ar~~~p~~~Iiara 102 (413)
T 3l9w_A 74 NAI-----DDPQTNLQLTEMVKEHFPHLQIIARA 102 (413)
T ss_dssp ECC-----SSHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred ECC-----CChHHHHHHHHHHHHhCCCCeEEEEE
Confidence 643 333 334555667778887777744
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=86.76 E-value=4.1 Score=35.48 Aligned_cols=78 Identities=21% Similarity=0.273 Sum_probs=53.3
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCC------------HHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLS------------PVQAQRANALAAARGLADKVSFQVGDALQQP-- 221 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s------------~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-- 221 (371)
+++||=.|++ |..+..+++.+ |++|+.+|.+ ++.++...+.+...+ .++.++..|+.+..
T Consensus 13 gk~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v 89 (278)
T 3sx2_A 13 GKVAFITGAA-RGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIG--SRIVARQADVRDRESL 89 (278)
T ss_dssp TCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHT--CCEEEEECCTTCHHHH
T ss_pred CCEEEEECCC-ChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcC--CeEEEEeCCCCCHHHH
Confidence 6788888854 55555555554 8999999987 666666655555544 57999999998742
Q ss_pred ---CC-----CCccceEEccccccCc
Q 017428 222 ---FP-----DGQFDLVWSMESGEHM 239 (371)
Q Consensus 222 ---~~-----~~~fD~v~~~~~l~~~ 239 (371)
+. -+..|+++.+..+...
T Consensus 90 ~~~~~~~~~~~g~id~lv~nAg~~~~ 115 (278)
T 3sx2_A 90 SAALQAGLDELGRLDIVVANAGIAPM 115 (278)
T ss_dssp HHHHHHHHHHHCCCCEEEECCCCCCC
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCC
Confidence 10 1478999887665443
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=86.55 E-value=3.1 Score=36.03 Aligned_cols=106 Identities=18% Similarity=0.148 Sum_probs=66.9
Q ss_pred CCCEEEEECCCcC-hHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----C
Q 017428 158 RPKNVVDVGCGIG-GSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----P 223 (371)
Q Consensus 158 ~~~~VLDlG~GtG-~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 223 (371)
.++.+|=-|++.+ ..+..+++.+ |++|+.+|.++..++.+.+.++..+- .++.++..|+.+.. + .
T Consensus 5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~ 83 (256)
T 4fs3_A 5 ENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQ-PEAHLYQIDVQSDEEVINGFEQIGKD 83 (256)
T ss_dssp TTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGTC-SSCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 3788998886431 2334444433 89999999998888877777765542 46888999987742 0 1
Q ss_pred CCccceEEccccccCc-------C--CHH--------------HHHHHHHHhcCCCcEEEEEec
Q 017428 224 DGQFDLVWSMESGEHM-------P--DKS--------------KFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 224 ~~~fD~v~~~~~l~~~-------~--~~~--------------~~l~~~~~~LkpgG~l~i~~~ 264 (371)
-+..|+++.+..+... . +.+ ...+.+...++.+|.++....
T Consensus 84 ~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS 147 (256)
T 4fs3_A 84 VGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTY 147 (256)
T ss_dssp HCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEEC
T ss_pred hCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEec
Confidence 2678988876443221 1 111 122344566778898887653
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=86.06 E-value=11 Score=32.66 Aligned_cols=103 Identities=22% Similarity=0.184 Sum_probs=67.0
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeC-CHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITL-SPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PD 224 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~-s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~ 224 (371)
+++||=.|++ |..+..+++.+ |++|+.++. +....+...+.+...+ .++.++..|+.+.. + .-
T Consensus 18 ~k~~lVTGas-~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 94 (270)
T 3is3_A 18 GKVALVTGSG-RGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALG--SDAIAIKADIRQVPEIVKLFDQAVAHF 94 (270)
T ss_dssp TCEEEESCTT-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 5678877754 55556666555 889998775 4555665555565544 57999999998742 0 01
Q ss_pred CccceEEccccccCcC-----C---HH-----------HHHHHHHHhcCCCcEEEEEec
Q 017428 225 GQFDLVWSMESGEHMP-----D---KS-----------KFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 225 ~~fD~v~~~~~l~~~~-----~---~~-----------~~l~~~~~~LkpgG~l~i~~~ 264 (371)
+..|+++.+..+.... + +. .+.+.+.+.++.+|.+++...
T Consensus 95 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS 153 (270)
T 3is3_A 95 GHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSS 153 (270)
T ss_dssp SCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 4689998776554321 1 11 345667778888998888764
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=85.88 E-value=3.7 Score=35.69 Aligned_cols=75 Identities=20% Similarity=0.168 Sum_probs=55.7
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----------CCCC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----------FPDG 225 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~~~~ 225 (371)
++.+|=-|++.|. +..+++.+ |++|+.+|.+++.++.+.+.++..+ .++.++..|+.+.. -.-+
T Consensus 7 gKvalVTGas~GI-G~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~~~G 83 (254)
T 4fn4_A 7 NKVVIVTGAGSGI-GRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMG--KEVLGVKADVSKKKDVEEFVRRTFETYS 83 (254)
T ss_dssp TCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCEEEEeCCCCHH-HHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 6778888866654 44555444 8999999999999988888887766 57999999998752 0126
Q ss_pred ccceEEccccc
Q 017428 226 QFDLVWSMESG 236 (371)
Q Consensus 226 ~fD~v~~~~~l 236 (371)
..|+++.+..+
T Consensus 84 ~iDiLVNNAGi 94 (254)
T 4fn4_A 84 RIDVLCNNAGI 94 (254)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCcc
Confidence 78998876543
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=85.83 E-value=1.3 Score=40.06 Aligned_cols=66 Identities=14% Similarity=0.053 Sum_probs=48.7
Q ss_pred CEEEEECCCcChHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC-CCCccceEEcc
Q 017428 160 KNVVDVGCGIGGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF-PDGQFDLVWSM 233 (371)
Q Consensus 160 ~~VLDlG~GtG~~~~~l~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~v~~~ 233 (371)
++|||+=||.|.+...+.+. |.+ |.++|+++...+.-+.+. + -.++.+|+.++.. .-..+|+++..
T Consensus 1 mkvidLFsG~GG~~~G~~~a-G~~~v~a~e~d~~a~~ty~~N~-----~--~~~~~~DI~~i~~~~~~~~D~l~gg 68 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKA-GFRIICANEYDKSIWKTYESNH-----S--AKLIKGDISKISSDEFPKCDGIIGG 68 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHT-TCEEEEEEECCTTTHHHHHHHC-----C--SEEEESCGGGCCGGGSCCCSEEECC
T ss_pred CeEEEeCcCccHHHHHHHHC-CCEEEEEEeCCHHHHHHHHHHC-----C--CCcccCChhhCCHhhCCcccEEEec
Confidence 47999999999999888765 554 668999998877766553 2 3567899887642 12458988864
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=85.66 E-value=11 Score=33.51 Aligned_cols=79 Identities=18% Similarity=0.096 Sum_probs=51.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEE-EcCCCCCC-CC--CCccceE
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQ-VGDALQQP-FP--DGQFDLV 230 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~-~~d~~~~~-~~--~~~fD~v 230 (371)
++++||=.| |+|..+..+++.+ +.+|++++.++...+.....+.... +.++.++ .+|+.+.. +. -..+|+|
T Consensus 10 ~~~~vlVTG-atG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~d~~~~~~~~~~~d~v 87 (342)
T 1y1p_A 10 EGSLVLVTG-ANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKY-PGRFETAVVEDMLKQGAYDEVIKGAAGV 87 (342)
T ss_dssp TTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHS-TTTEEEEECSCTTSTTTTTTTTTTCSEE
T ss_pred CCCEEEEEC-CccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccC-CCceEEEEecCCcChHHHHHHHcCCCEE
Confidence 367899887 5677777777655 7899999998876554444332211 1468888 78987643 11 1358998
Q ss_pred EccccccC
Q 017428 231 WSMESGEH 238 (371)
Q Consensus 231 ~~~~~l~~ 238 (371)
+.+.....
T Consensus 88 ih~A~~~~ 95 (342)
T 1y1p_A 88 AHIASVVS 95 (342)
T ss_dssp EECCCCCS
T ss_pred EEeCCCCC
Confidence 87655443
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=85.47 E-value=6.4 Score=34.18 Aligned_cols=77 Identities=12% Similarity=0.018 Sum_probs=56.0
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----------CCCC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----------FPDG 225 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~~~~ 225 (371)
++.+|=-|++. ..+..+++.+ |++|+.+|.+++.++.+.+.+...+ .++.++..|+.+.. -.-+
T Consensus 9 gKvalVTGas~-GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~G 85 (255)
T 4g81_D 9 GKTALVTGSAR-GLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKG--YDAHGVAFDVTDELAIEAAFSKLDAEGI 85 (255)
T ss_dssp TCEEEETTCSS-HHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTT--CCEEECCCCTTCHHHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHHCC
Confidence 66777767554 4555555555 8999999999999888888777766 47889999988742 1236
Q ss_pred ccceEEccccccC
Q 017428 226 QFDLVWSMESGEH 238 (371)
Q Consensus 226 ~fD~v~~~~~l~~ 238 (371)
+.|+++.+..+..
T Consensus 86 ~iDiLVNNAG~~~ 98 (255)
T 4g81_D 86 HVDILINNAGIQY 98 (255)
T ss_dssp CCCEEEECCCCCC
T ss_pred CCcEEEECCCCCC
Confidence 7899987765544
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=85.33 E-value=6.4 Score=34.58 Aligned_cols=77 Identities=14% Similarity=0.126 Sum_probs=54.7
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C----C------CC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P----F------PD 224 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~----~------~~ 224 (371)
+++||=.|++ |..+..+++.+ |++|++++.++...+.+.+.+...+ ..++.++.+|+.+. . + ..
T Consensus 12 ~k~vlITGas-~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~~v~~~~~~~~~~~ 89 (311)
T 3o26_A 12 RRCAVVTGGN-KGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSN-HENVVFHQLDVTDPIATMSSLADFIKTHF 89 (311)
T ss_dssp CCEEEESSCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT-CCSEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CcEEEEecCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CCceEEEEccCCCcHHHHHHHHHHHHHhC
Confidence 5677777754 55666666555 8999999999988777766665543 24799999999885 2 0 01
Q ss_pred CccceEEcccccc
Q 017428 225 GQFDLVWSMESGE 237 (371)
Q Consensus 225 ~~fD~v~~~~~l~ 237 (371)
+..|+++.+..+.
T Consensus 90 g~iD~lv~nAg~~ 102 (311)
T 3o26_A 90 GKLDILVNNAGVA 102 (311)
T ss_dssp SSCCEEEECCCCC
T ss_pred CCCCEEEECCccc
Confidence 4789998876654
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=85.30 E-value=2.6 Score=36.55 Aligned_cols=102 Identities=19% Similarity=0.143 Sum_probs=63.9
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEE-eCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC-----C
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGI-TLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FP-----D 224 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gv-D~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~-----~ 224 (371)
+++||=.|++. ..+..+++.+ |++|+.+ +.+....+.+.+.+...+ .++.++..|+.+.. +. -
T Consensus 8 ~k~vlVTGas~-GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 84 (259)
T 3edm_A 8 NRTIVVAGAGR-DIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLG--RSALAIKADLTNAAEVEAAISAAADKF 84 (259)
T ss_dssp TCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTTT--SCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 67888888654 4555555544 8899988 667666666666555444 57889999998742 10 1
Q ss_pred CccceEEcccccc-C---cC--C---HH-----------HHHHHHHHhcCCCcEEEEEe
Q 017428 225 GQFDLVWSMESGE-H---MP--D---KS-----------KFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 225 ~~fD~v~~~~~l~-~---~~--~---~~-----------~~l~~~~~~LkpgG~l~i~~ 263 (371)
+..|+++.+.... . +. + +. .+.+.+.+.++.+|.++...
T Consensus 85 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~is 143 (259)
T 3edm_A 85 GEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFS 143 (259)
T ss_dssp CSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred CCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEc
Confidence 4689888765433 1 11 1 11 34455566666778877765
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=85.18 E-value=7.3 Score=32.16 Aligned_cols=94 Identities=10% Similarity=0.120 Sum_probs=58.2
Q ss_pred CEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC-CCCccceEEcccc
Q 017428 160 KNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF-PDGQFDLVWSMES 235 (371)
Q Consensus 160 ~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~v~~~~~ 235 (371)
++||=.| |+|..+..+++.+ +.+|++++-++..+.... +++.++.+|+.+... .-..+|+|+.+..
T Consensus 1 MkvlVtG-atG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~---------~~~~~~~~D~~d~~~~~~~~~d~vi~~ag 70 (221)
T 3ew7_A 1 MKIGIIG-ATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH---------KDINILQKDIFDLTLSDLSDQNVVVDAYG 70 (221)
T ss_dssp CEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC---------SSSEEEECCGGGCCHHHHTTCSEEEECCC
T ss_pred CeEEEEc-CCchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc---------CCCeEEeccccChhhhhhcCCCEEEECCc
Confidence 3677776 5677777776655 789999999876544321 468999999987531 1145799887654
Q ss_pred ccCc--CCHHHHHHHHHHhcCC--CcEEEEEe
Q 017428 236 GEHM--PDKSKFVSELARVTAP--AGTIIIVT 263 (371)
Q Consensus 236 l~~~--~~~~~~l~~~~~~Lkp--gG~l~i~~ 263 (371)
...- ........++.+.++. .+.+++..
T Consensus 71 ~~~~~~~~~~~~~~~l~~a~~~~~~~~~v~~S 102 (221)
T 3ew7_A 71 ISPDEAEKHVTSLDHLISVLNGTVSPRLLVVG 102 (221)
T ss_dssp SSTTTTTSHHHHHHHHHHHHCSCCSSEEEEEC
T ss_pred CCccccchHHHHHHHHHHHHHhcCCceEEEEe
Confidence 4221 2223444555555544 35666654
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=84.68 E-value=1.7 Score=39.75 Aligned_cols=92 Identities=17% Similarity=0.167 Sum_probs=53.3
Q ss_pred CCCEEEEECC--CcChHHHHHHHHcCCEEEEEe-CCHH---HHHHHHHHHHHcCCCCCeEEEEc------CCCCCCCCCC
Q 017428 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGIT-LSPV---QAQRANALAAARGLADKVSFQVG------DALQQPFPDG 225 (371)
Q Consensus 158 ~~~~VLDlG~--GtG~~~~~l~~~~~~~v~gvD-~s~~---~~~~a~~~~~~~~~~~~v~~~~~------d~~~~~~~~~ 225 (371)
++.+||=+|+ |.|..+..+++..|++++++. .++. ..+.++ ..|.. .++.. ++.+..-..+
T Consensus 167 ~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~----~lGa~---~vi~~~~~~~~~~~~~~~~~~ 239 (357)
T 1zsy_A 167 PGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLK----SLGAE---HVITEEELRRPEMKNFFKDMP 239 (357)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHHHHHHHHH----HTTCS---EEEEHHHHHSGGGGGTTSSSC
T ss_pred CCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchHHHHHHHH----hcCCc---EEEecCcchHHHHHHHHhCCC
Confidence 4899999996 468888899987788776654 4332 233333 34431 12221 1111110112
Q ss_pred ccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 226 QFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 226 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
.+|+|+-.- .. .. +..+.++|++||.+++..
T Consensus 240 ~~Dvvid~~-----g~-~~-~~~~~~~l~~~G~iv~~G 270 (357)
T 1zsy_A 240 QPRLALNCV-----GG-KS-STELLRQLARGGTMVTYG 270 (357)
T ss_dssp CCSEEEESS-----CH-HH-HHHHHTTSCTTCEEEECC
T ss_pred CceEEEECC-----Cc-HH-HHHHHHhhCCCCEEEEEe
Confidence 489887432 22 22 345789999999998864
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=84.46 E-value=4.3 Score=33.82 Aligned_cols=95 Identities=15% Similarity=0.137 Sum_probs=59.8
Q ss_pred CEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC-CCCccceEEcccc
Q 017428 160 KNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF-PDGQFDLVWSMES 235 (371)
Q Consensus 160 ~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~v~~~~~ 235 (371)
++||=.| |+|..+..+++.+ +.+|++++-++..+... ...++.++.+|+.+... .-+.+|+|+.+..
T Consensus 1 MkilVtG-atG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~--------~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag 71 (224)
T 3h2s_A 1 MKIAVLG-ATGRAGSAIVAEARRRGHEVLAVVRDPQKAADR--------LGATVATLVKEPLVLTEADLDSVDAVVDALS 71 (224)
T ss_dssp CEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH--------TCTTSEEEECCGGGCCHHHHTTCSEEEECCC
T ss_pred CEEEEEc-CCCHHHHHHHHHHHHCCCEEEEEEecccccccc--------cCCCceEEecccccccHhhcccCCEEEECCc
Confidence 3577777 5677777777665 78999999998665422 12478999999987531 1145798887665
Q ss_pred ccCcC----CHHHHHHHHHHhcCC-CcEEEEEe
Q 017428 236 GEHMP----DKSKFVSELARVTAP-AGTIIIVT 263 (371)
Q Consensus 236 l~~~~----~~~~~l~~~~~~Lkp-gG~l~i~~ 263 (371)
..+-+ .......++.+.++. |+.+++..
T Consensus 72 ~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~S 104 (224)
T 3h2s_A 72 VPWGSGRGYLHLDFATHLVSLLRNSDTLAVFIL 104 (224)
T ss_dssp CCTTSSCTHHHHHHHHHHHHTCTTCCCEEEEEC
T ss_pred cCCCcchhhHHHHHHHHHHHHHHHcCCcEEEEe
Confidence 53211 123344555555543 45666653
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=83.90 E-value=5.9 Score=37.22 Aligned_cols=88 Identities=18% Similarity=0.148 Sum_probs=53.4
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l 236 (371)
.+.+|+=+|+|. |......++.+|++|+++|.++.....+.. .| .. ..++.+. -...|+|+....-
T Consensus 219 ~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~----~G----~~--v~~Leea---l~~ADIVi~atgt 285 (435)
T 3gvp_A 219 GGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQACM----DG----FR--LVKLNEV---IRQVDIVITCTGN 285 (435)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----TT----CE--ECCHHHH---TTTCSEEEECSSC
T ss_pred cCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHHH----cC----CE--eccHHHH---HhcCCEEEECCCC
Confidence 478999999986 444444555559999999999865444332 22 22 2233221 1346988875322
Q ss_pred cCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 237 EHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 237 ~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
.++-+ .+..+.+|||++|+-+.
T Consensus 286 ~~lI~-----~e~l~~MK~gailINvg 307 (435)
T 3gvp_A 286 KNVVT-----REHLDRMKNSCIVCNMG 307 (435)
T ss_dssp SCSBC-----HHHHHHSCTTEEEEECS
T ss_pred cccCC-----HHHHHhcCCCcEEEEec
Confidence 23222 35667899998777654
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=83.79 E-value=4.9 Score=34.94 Aligned_cols=102 Identities=18% Similarity=0.134 Sum_probs=64.5
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEE-eCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGI-TLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PD 224 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gv-D~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~ 224 (371)
+++||=.|++. ..+..+++.+ |++|+.+ ..++...+...+.+...+ .++.++..|+.+.. + .-
T Consensus 27 ~k~~lVTGas~-GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 103 (267)
T 3u5t_A 27 NKVAIVTGASR-GIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAAG--GKALTAQADVSDPAAVRRLFATAEEAF 103 (267)
T ss_dssp CCEEEEESCSS-HHHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 67788888654 4455555444 8898887 445555665555555544 57899999998742 0 01
Q ss_pred CccceEEccccccCcC--------CHH-----------HHHHHHHHhcCCCcEEEEEe
Q 017428 225 GQFDLVWSMESGEHMP--------DKS-----------KFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 225 ~~fD~v~~~~~l~~~~--------~~~-----------~~l~~~~~~LkpgG~l~i~~ 263 (371)
+..|+++.+..+.... ++. .+++.+.+.++.+|.++...
T Consensus 104 g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~is 161 (267)
T 3u5t_A 104 GGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMS 161 (267)
T ss_dssp SCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 4789988776553321 111 24556667777888888765
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=83.45 E-value=3.8 Score=36.05 Aligned_cols=99 Identities=19% Similarity=0.148 Sum_probs=65.2
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----------CCCC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----------FPDG 225 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~~~~ 225 (371)
++.+|=-|++.| .+..+++.+ |++|+.+|.+++.++.+.+.+ + .++.++.+|+.+.. -.-+
T Consensus 29 gKvalVTGas~G-IG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~---g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~G 102 (273)
T 4fgs_A 29 AKIAVITGATSG-IGLAAAKRFVAEGARVFITGRRKDVLDAAIAEI---G--GGAVGIQADSANLAELDRLYEKVKAEAG 102 (273)
T ss_dssp TCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---C--TTCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCEEEEeCcCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc---C--CCeEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 677888886655 555555554 899999999998877655443 2 46788899988742 0125
Q ss_pred ccceEEccccccCcC--------CHH-----------HHHHHHHHhcCCCcEEEEEe
Q 017428 226 QFDLVWSMESGEHMP--------DKS-----------KFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 226 ~fD~v~~~~~l~~~~--------~~~-----------~~l~~~~~~LkpgG~l~i~~ 263 (371)
+.|+++.+....... +++ .+.+.+...|+.+|.++...
T Consensus 103 ~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInis 159 (273)
T 4fgs_A 103 RIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTG 159 (273)
T ss_dssp CEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEC
T ss_pred CCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 789888765543321 121 34555667778888877764
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=83.32 E-value=11 Score=32.31 Aligned_cols=73 Identities=19% Similarity=0.167 Sum_probs=50.3
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CCC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDG 225 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~ 225 (371)
+++||=.|++ |..+..+++.+ |++|+.+|.++..++...+.+ ..++.++..|+.+.. + .-+
T Consensus 8 ~k~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 81 (259)
T 4e6p_A 8 GKSALITGSA-RGIGRAFAEAYVREGATVAIADIDIERARQAAAEI-----GPAAYAVQMDVTRQDSIDAAIAATVEHAG 81 (259)
T ss_dssp TCEEEEETCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----CTTEEEEECCTTCHHHHHHHHHHHHHHSS
T ss_pred CCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCCceEEEeeCCCHHHHHHHHHHHHHHcC
Confidence 6788888854 55555665555 899999999987766554443 246889999998742 0 124
Q ss_pred ccceEEcccccc
Q 017428 226 QFDLVWSMESGE 237 (371)
Q Consensus 226 ~fD~v~~~~~l~ 237 (371)
..|+++.+..+.
T Consensus 82 ~id~lv~~Ag~~ 93 (259)
T 4e6p_A 82 GLDILVNNAALF 93 (259)
T ss_dssp SCCEEEECCCCC
T ss_pred CCCEEEECCCcC
Confidence 789998876553
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=83.19 E-value=4.6 Score=31.78 Aligned_cols=93 Identities=22% Similarity=0.224 Sum_probs=51.5
Q ss_pred CCCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----CCCCccceE
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----FPDGQFDLV 230 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~v 230 (371)
++.+|+=+|+| .++..+++.+ +.+|+++|.++..++.++. . .++.++.+|..+.. ..-..+|+|
T Consensus 18 ~~~~v~IiG~G--~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~---~----~g~~~~~~d~~~~~~l~~~~~~~ad~V 88 (155)
T 2g1u_A 18 KSKYIVIFGCG--RLGSLIANLASSSGHSVVVVDKNEYAFHRLNS---E----FSGFTVVGDAAEFETLKECGMEKADMV 88 (155)
T ss_dssp CCCEEEEECCS--HHHHHHHHHHHHTTCEEEEEESCGGGGGGSCT---T----CCSEEEESCTTSHHHHHTTTGGGCSEE
T ss_pred CCCcEEEECCC--HHHHHHHHHHHhCCCeEEEEECCHHHHHHHHh---c----CCCcEEEecCCCHHHHHHcCcccCCEE
Confidence 47899999875 4444444433 7899999999876543321 1 23556667764421 112458888
Q ss_pred EccccccCcCCHHHHHHHHHHhcCCCcEEEEE
Q 017428 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262 (371)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 262 (371)
+..-.- ......+..+.+.+.|...++..
T Consensus 89 i~~~~~---~~~~~~~~~~~~~~~~~~~iv~~ 117 (155)
T 2g1u_A 89 FAFTND---DSTNFFISMNARYMFNVENVIAR 117 (155)
T ss_dssp EECSSC---HHHHHHHHHHHHHTSCCSEEEEE
T ss_pred EEEeCC---cHHHHHHHHHHHHHCCCCeEEEE
Confidence 765321 11223334444545555555553
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=83.06 E-value=0.75 Score=42.25 Aligned_cols=97 Identities=10% Similarity=0.071 Sum_probs=56.0
Q ss_pred CC-CEEEEECC--CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc------CCCC-C-CC---C
Q 017428 158 RP-KNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVG------DALQ-Q-PF---P 223 (371)
Q Consensus 158 ~~-~~VLDlG~--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~------d~~~-~-~~---~ 223 (371)
++ .+||=+|+ |.|..+..+++..+++++++.-++..++..++.++..|.. .++.. |+.+ + .. .
T Consensus 166 ~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~---~vi~~~~~~~~~~~~~i~~~t~~~ 242 (364)
T 1gu7_A 166 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGAT---QVITEDQNNSREFGPTIKEWIKQS 242 (364)
T ss_dssp TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCS---EEEEHHHHHCGGGHHHHHHHHHHH
T ss_pred CCCcEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCccccHHHHHHHHhcCCe---EEEecCccchHHHHHHHHHHhhcc
Confidence 47 89999986 3577888888877999888875544311111222334431 12211 1110 0 00 1
Q ss_pred CCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 224 DGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 224 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
...+|+|+-.-. . .... .+.++|+++|.+++...
T Consensus 243 ~~g~Dvvid~~G-----~-~~~~-~~~~~l~~~G~~v~~g~ 276 (364)
T 1gu7_A 243 GGEAKLALNCVG-----G-KSST-GIARKLNNNGLMLTYGG 276 (364)
T ss_dssp TCCEEEEEESSC-----H-HHHH-HHHHTSCTTCEEEECCC
T ss_pred CCCceEEEECCC-----c-hhHH-HHHHHhccCCEEEEecC
Confidence 246898875422 1 2233 67899999999988653
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=83.03 E-value=1.7 Score=39.57 Aligned_cols=89 Identities=17% Similarity=0.068 Sum_probs=56.8
Q ss_pred CEEEEE-CCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC--------CCccce
Q 017428 160 KNVVDV-GCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP--------DGQFDL 229 (371)
Q Consensus 160 ~~VLDl-G~G-tG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--------~~~fD~ 229 (371)
.+||=. |+| .|..+..+++..|++|++++.+++.++.+++ .|. -.++ |..+..+. ...+|+
T Consensus 166 ~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----~Ga---~~~~--~~~~~~~~~~v~~~~~~~g~D~ 236 (349)
T 3pi7_A 166 KAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLKD----IGA---AHVL--NEKAPDFEATLREVMKAEQPRI 236 (349)
T ss_dssp SEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHHHH----HTC---SEEE--ETTSTTHHHHHHHHHHHHCCCE
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cCC---CEEE--ECCcHHHHHHHHHHhcCCCCcE
Confidence 566644 333 4666777777779999999999988887764 232 1222 22222111 136998
Q ss_pred EEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 230 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
|+-+-.- ..+..+.+.|+++|.+++...
T Consensus 237 vid~~g~-------~~~~~~~~~l~~~G~iv~~G~ 264 (349)
T 3pi7_A 237 FLDAVTG-------PLASAIFNAMPKRARWIIYGR 264 (349)
T ss_dssp EEESSCH-------HHHHHHHHHSCTTCEEEECCC
T ss_pred EEECCCC-------hhHHHHHhhhcCCCEEEEEec
Confidence 8854321 234778899999999998753
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=82.90 E-value=6 Score=34.53 Aligned_cols=75 Identities=16% Similarity=0.131 Sum_probs=53.4
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC---------CCCc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF---------PDGQ 226 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---------~~~~ 226 (371)
+++||=.|+ +|..+..+++.+ |++|+.+|.++...+.+.+.+...+ .++.++..|+.+..- ..+.
T Consensus 33 gk~~lVTGa-s~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~g~ 109 (275)
T 4imr_A 33 GRTALVTGS-SRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIASG--GTAQELAGDLSEAGAGTDLIERAEAIAP 109 (275)
T ss_dssp TCEEEETTC-SSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHTT--CCEEEEECCTTSTTHHHHHHHHHHHHSC
T ss_pred CCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEecCCCHHHHHHHHHHHHHhCC
Confidence 567777775 455666666555 8999999999887777766666554 579999999987530 0147
Q ss_pred cceEEccccc
Q 017428 227 FDLVWSMESG 236 (371)
Q Consensus 227 fD~v~~~~~l 236 (371)
.|+++.+...
T Consensus 110 iD~lvnnAg~ 119 (275)
T 4imr_A 110 VDILVINASA 119 (275)
T ss_dssp CCEEEECCCC
T ss_pred CCEEEECCCC
Confidence 8999877654
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=82.37 E-value=8.2 Score=30.13 Aligned_cols=94 Identities=10% Similarity=0.072 Sum_probs=56.9
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCC-HHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----CCCCccceE
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLS-PVQAQRANALAAARGLADKVSFQVGDALQQP----FPDGQFDLV 230 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~v 230 (371)
..+|+=+|+ |..+..+++.+ +..|+.+|.+ ++..+..+... +.++.++.+|..+.. ..-...|+|
T Consensus 3 ~~~vlI~G~--G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~-----~~~~~~i~gd~~~~~~l~~a~i~~ad~v 75 (153)
T 1id1_A 3 KDHFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRL-----GDNADVIPGDSNDSSVLKKAGIDRCRAI 75 (153)
T ss_dssp CSCEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHH-----CTTCEEEESCTTSHHHHHHHTTTTCSEE
T ss_pred CCcEEEECC--CHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhh-----cCCCeEEEcCCCCHHHHHHcChhhCCEE
Confidence 456887875 66776666655 7899999997 44443333221 235788999987642 112467888
Q ss_pred EccccccCcCCHHHHHHHHHHhcCCCcEEEEE
Q 017428 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262 (371)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 262 (371)
++...- ......+....+.+.|...++..
T Consensus 76 i~~~~~---d~~n~~~~~~a~~~~~~~~ii~~ 104 (153)
T 1id1_A 76 LALSDN---DADNAFVVLSAKDMSSDVKTVLA 104 (153)
T ss_dssp EECSSC---HHHHHHHHHHHHHHTSSSCEEEE
T ss_pred EEecCC---hHHHHHHHHHHHHHCCCCEEEEE
Confidence 765311 11234455566667777776663
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=82.11 E-value=6.9 Score=33.37 Aligned_cols=75 Identities=17% Similarity=0.100 Sum_probs=54.5
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CCC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDG 225 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~ 225 (371)
+++||=.|+ +|..+..+++.+ |++|+.+|.++..++...+.+...+ .++.++..|+.+.. + ..+
T Consensus 9 ~k~vlITGa-s~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g 85 (253)
T 3qiv_A 9 NKVGIVTGS-GGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADG--GTAISVAVDVSDPESAKAMADRTLAEFG 85 (253)
T ss_dssp TCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCEEEEECC-CChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 677888885 455566666555 8899999999988888777776654 57889999998742 0 013
Q ss_pred ccceEEccccc
Q 017428 226 QFDLVWSMESG 236 (371)
Q Consensus 226 ~fD~v~~~~~l 236 (371)
..|+++.+..+
T Consensus 86 ~id~li~~Ag~ 96 (253)
T 3qiv_A 86 GIDYLVNNAAI 96 (253)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCc
Confidence 68999877654
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=82.09 E-value=8.5 Score=33.98 Aligned_cols=88 Identities=17% Similarity=0.063 Sum_probs=51.0
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE-cCCCCCCCCCCccceEEcccc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQV-GDALQQPFPDGQFDLVWSMES 235 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~fD~v~~~~~ 235 (371)
++.+|+=+|+|. |......+..++.+|+++|.++...+.+. ..+ +.+.. .++.+. -...|+|+..-.
T Consensus 154 ~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~----~~g----~~~~~~~~l~~~---l~~aDvVi~~~p 222 (293)
T 3d4o_A 154 HGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIA----EMG----MEPFHISKAAQE---LRDVDVCINTIP 222 (293)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH----HTT----SEEEEGGGHHHH---TTTCSEEEECCS
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH----HCC----CeecChhhHHHH---hcCCCEEEECCC
Confidence 478999999864 33333333444889999999987554432 223 33321 121111 145799887655
Q ss_pred ccCcCCHHHHHHHHHHhcCCCcEEEEE
Q 017428 236 GEHMPDKSKFVSELARVTAPAGTIIIV 262 (371)
Q Consensus 236 l~~~~~~~~~l~~~~~~LkpgG~l~i~ 262 (371)
.+.+ +. +....+|||+.++-+
T Consensus 223 ~~~i-~~-----~~l~~mk~~~~lin~ 243 (293)
T 3d4o_A 223 ALVV-TA-----NVLAEMPSHTFVIDL 243 (293)
T ss_dssp SCCB-CH-----HHHHHSCTTCEEEEC
T ss_pred hHHh-CH-----HHHHhcCCCCEEEEe
Confidence 4332 22 344578999877654
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=82.08 E-value=7 Score=36.94 Aligned_cols=104 Identities=16% Similarity=0.112 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcC
Q 017428 138 QVRMIEETLRFAGVSEDPTKRPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216 (371)
Q Consensus 138 ~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~Gt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d 216 (371)
.+..+..+.+.....- .+.+|+=+|+|. |......++.+|++|+++|.++.....+.. .| +.+ .+
T Consensus 230 ~eslvdgI~Ratg~~L----~GKTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~~----~G----~~v--v~ 295 (464)
T 3n58_A 230 KESLVDGIRRGTDVMM----AGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQAAM----DG----FEV--VT 295 (464)
T ss_dssp HHHHHHHHHHHHCCCC----TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHH----TT----CEE--CC
T ss_pred hHHHHHHHHHhcCCcc----cCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCcchhhHHHh----cC----cee--cc
Confidence 3445555555443322 478999999885 444444455559999999999865433321 22 332 23
Q ss_pred CCCCCCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 217 ALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 217 ~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+.+. + ...|+|+....-.|+-+ .+....+|||++|+-+.
T Consensus 296 LeEl-L--~~ADIVv~atgt~~lI~-----~e~l~~MK~GAILINvG 334 (464)
T 3n58_A 296 LDDA-A--STADIVVTTTGNKDVIT-----IDHMRKMKDMCIVGNIG 334 (464)
T ss_dssp HHHH-G--GGCSEEEECCSSSSSBC-----HHHHHHSCTTEEEEECS
T ss_pred HHHH-H--hhCCEEEECCCCccccC-----HHHHhcCCCCeEEEEcC
Confidence 3221 1 35788876432223222 46677889999887654
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=81.98 E-value=12 Score=32.90 Aligned_cols=77 Identities=21% Similarity=0.257 Sum_probs=52.0
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCC-CCCeEEEEcCCCCCC-----CC-----C
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGL-ADKVSFQVGDALQQP-----FP-----D 224 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~-~~~v~~~~~d~~~~~-----~~-----~ 224 (371)
+++||=.| |+|..+..+++.+ |++|+.++.++..++...+.+...+. ..++.++..|+.+.. +. -
T Consensus 26 ~k~vlVTG-as~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 104 (297)
T 1xhl_A 26 GKSVIITG-SSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAKF 104 (297)
T ss_dssp TCEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHHHhc
Confidence 56777666 4566666666655 88999999998877766655554431 116889999998742 10 1
Q ss_pred CccceEEccccc
Q 017428 225 GQFDLVWSMESG 236 (371)
Q Consensus 225 ~~fD~v~~~~~l 236 (371)
+..|+++.+..+
T Consensus 105 g~iD~lvnnAG~ 116 (297)
T 1xhl_A 105 GKIDILVNNAGA 116 (297)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCCc
Confidence 468998877654
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=81.76 E-value=8.3 Score=33.40 Aligned_cols=76 Identities=18% Similarity=0.093 Sum_probs=54.0
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CCC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDG 225 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~ 225 (371)
+.+||=.|+ +|..+..+++.+ |++|+++|.++..++...+.+...+ .++.++.+|+.+.. + ..+
T Consensus 31 ~k~vlITGa-sggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 107 (272)
T 1yb1_A 31 GEIVLITGA-GHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVKAEIG 107 (272)
T ss_dssp TCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhcC--CeEEEEEeeCCCHHHHHHHHHHHHHHCC
Confidence 577888874 566666666655 7899999999887776666665544 47899999998742 0 014
Q ss_pred ccceEEcccccc
Q 017428 226 QFDLVWSMESGE 237 (371)
Q Consensus 226 ~fD~v~~~~~l~ 237 (371)
.+|+|+.+....
T Consensus 108 ~iD~li~~Ag~~ 119 (272)
T 1yb1_A 108 DVSILVNNAGVV 119 (272)
T ss_dssp CCSEEEECCCCC
T ss_pred CCcEEEECCCcC
Confidence 689988776543
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=81.69 E-value=14 Score=30.98 Aligned_cols=77 Identities=17% Similarity=0.055 Sum_probs=53.0
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHH-HcCCCCCeEEEEcCCCCCC-----CC-----C
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAA-ARGLADKVSFQVGDALQQP-----FP-----D 224 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~~-----~~-----~ 224 (371)
+++||=.|+ +|..+..+++.+ |++|+.++.++..++...+.+. ..+ .++.++..|+.+.. +. -
T Consensus 2 ~k~vlITGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~~ 78 (235)
T 3l77_A 2 MKVAVITGA-SRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQG--VEVFYHHLDVSKAESVEEFSKKVLERF 78 (235)
T ss_dssp CCEEEEESC-SSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHC--CCEEEEECCTTCHHHHHHHCC-HHHHH
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcC--CeEEEEEeccCCHHHHHHHHHHHHHhc
Confidence 456777775 455666666655 7899999999887776665554 333 47999999998742 11 1
Q ss_pred CccceEEccccccC
Q 017428 225 GQFDLVWSMESGEH 238 (371)
Q Consensus 225 ~~fD~v~~~~~l~~ 238 (371)
+..|+++.+..+.+
T Consensus 79 g~id~li~~Ag~~~ 92 (235)
T 3l77_A 79 GDVDVVVANAGLGY 92 (235)
T ss_dssp SSCSEEEECCCCCC
T ss_pred CCCCEEEECCcccc
Confidence 46899988766543
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=81.69 E-value=8.7 Score=33.09 Aligned_cols=76 Identities=16% Similarity=0.003 Sum_probs=46.4
Q ss_pred CCEEEEECCCc-ChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----------CCC
Q 017428 159 PKNVVDVGCGI-GGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----------FPD 224 (371)
Q Consensus 159 ~~~VLDlG~Gt-G~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~~~ 224 (371)
+++||=.|++. |..+..+++.+ +++|+.++.++...+.+++.....+ +..++..|+.+.. -.-
T Consensus 9 ~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~---~~~~~~~D~~~~~~v~~~~~~~~~~~ 85 (265)
T 1qsg_A 9 GKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLG---SDIVLQCDVAEDASIDTMFAELGKVW 85 (265)
T ss_dssp TCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHTT---CCCEEECCTTCHHHHHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHHhcC---CcEEEEccCCCHHHHHHHHHHHHHHc
Confidence 56788888652 66666666655 8899999987622222222222222 3467889987742 012
Q ss_pred CccceEEcccccc
Q 017428 225 GQFDLVWSMESGE 237 (371)
Q Consensus 225 ~~fD~v~~~~~l~ 237 (371)
+..|+++.+..+.
T Consensus 86 g~iD~lv~~Ag~~ 98 (265)
T 1qsg_A 86 PKFDGFVHSIGFA 98 (265)
T ss_dssp SSEEEEEECCCCC
T ss_pred CCCCEEEECCCCC
Confidence 4689988776543
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=81.46 E-value=8.9 Score=32.72 Aligned_cols=75 Identities=17% Similarity=0.134 Sum_probs=52.4
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC-----CC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FP-----DG 225 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~-----~~ 225 (371)
+++||=.|+ +|..+..+++.+ +++|++++.++...+...+.+...+ .++.++..|+.+.. +. .+
T Consensus 13 ~k~vlItGa-sggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 89 (260)
T 3awd_A 13 NRVAIVTGG-AQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEG--HDVSSVVMDVTNTESVQNAVRSVHEQEG 89 (260)
T ss_dssp TCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 567887774 566666666655 7899999999877766555555444 47899999998742 10 13
Q ss_pred ccceEEccccc
Q 017428 226 QFDLVWSMESG 236 (371)
Q Consensus 226 ~fD~v~~~~~l 236 (371)
..|+|+.+...
T Consensus 90 ~id~vi~~Ag~ 100 (260)
T 3awd_A 90 RVDILVACAGI 100 (260)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 68998876554
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=81.28 E-value=14 Score=31.79 Aligned_cols=100 Identities=18% Similarity=0.179 Sum_probs=61.7
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC-----CC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FP-----DG 225 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~-----~~ 225 (371)
+++||=.|+ +|..+..+++.+ |++|+.++.++..++...+. +..++.++..|+.+.. +. -+
T Consensus 6 ~k~vlITGa-s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~-----~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 79 (263)
T 2a4k_A 6 GKTILVTGA-ASGIGRAALDLFAREGASLVAVDREERLLAEAVAA-----LEAEAIAVVADVSDPKAVEAVFAEALEEFG 79 (263)
T ss_dssp TCEEEEEST-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT-----CCSSEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-----hcCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 567887775 455666666555 88999999998766544332 2246889999988742 10 14
Q ss_pred ccceEEccccccCcC-----C---HH-----------HHHHHHHHhcCCCcEEEEEec
Q 017428 226 QFDLVWSMESGEHMP-----D---KS-----------KFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 226 ~fD~v~~~~~l~~~~-----~---~~-----------~~l~~~~~~LkpgG~l~i~~~ 264 (371)
..|+++.+..+.... + +. .+.+.+...++.+|.++....
T Consensus 80 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS 137 (263)
T 2a4k_A 80 RLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGS 137 (263)
T ss_dssp CCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred CCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 679988776543321 1 11 234445555544788777653
|
| >2km1_A Protein DRE2; yeast, antiapoptotic, protein binding; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.87 E-value=1.1 Score=34.83 Aligned_cols=71 Identities=18% Similarity=0.238 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHHHHcCCCCCeEEEEcC-CC--CCCCCCCccceEEcccccc-C-cCCHHHHHHHHHHhcCCCcEEEE
Q 017428 190 SPVQAQRANALAAARGLADKVSFQVGD-AL--QQPFPDGQFDLVWSMESGE-H-MPDKSKFVSELARVTAPAGTIII 261 (371)
Q Consensus 190 s~~~~~~a~~~~~~~~~~~~v~~~~~d-~~--~~~~~~~~fD~v~~~~~l~-~-~~~~~~~l~~~~~~LkpgG~l~i 261 (371)
.|+.++.++....+.+- ..+.....| +. ...++.+.||.|+...--. . ..-+..++..+++.|||||.|..
T Consensus 21 ~pe~le~~k~~~~~~~~-~~~d~qmlDRLa~G~VsLp~stYD~V~~lt~~~~~~~~l~r~li~~l~~aLkpgG~L~g 96 (136)
T 2km1_A 21 TPELVENTKAQAASKKV-KFVDQFLINKLNDGSITLENAKYETVHYLTPEAQTDIKFPKKLISVLADSLKPNGSLIG 96 (136)
T ss_dssp SHHHHHHHHHHHHHTTE-EEEEEEEHHHHHHTCCCCCSSSCCSEEEECCCSSCSCCCCHHHHHHHHTTCCTTCCEEC
T ss_pred CHHHHHHHHHhhhcccc-chhhHHHHHHHhcCcccCCcccccEEEEecCCccchhhcCHHHHHHHHHHhCCCCEEEe
Confidence 36667777666655210 112333333 11 1236789999998654322 2 22348899999999999999986
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=80.82 E-value=9.2 Score=32.97 Aligned_cols=75 Identities=19% Similarity=0.134 Sum_probs=54.0
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CCC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDG 225 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~ 225 (371)
+++||=.|++.| .+..+++.+ |++|+.+|.++..++...+.+...+ .++.++..|+.+.. + .-+
T Consensus 11 ~k~vlVTGas~g-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 87 (264)
T 3ucx_A 11 DKVVVISGVGPA-LGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTG--RRALSVGTDITDDAQVAHLVDETMKAYG 87 (264)
T ss_dssp TCEEEEESCCTT-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred CcEEEEECCCcH-HHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 678888887655 444444444 8999999999988887777776655 57999999998752 1 124
Q ss_pred ccceEEccccc
Q 017428 226 QFDLVWSMESG 236 (371)
Q Consensus 226 ~fD~v~~~~~l 236 (371)
..|+++.+...
T Consensus 88 ~id~lv~nAg~ 98 (264)
T 3ucx_A 88 RVDVVINNAFR 98 (264)
T ss_dssp CCSEEEECCCS
T ss_pred CCcEEEECCCC
Confidence 78998876533
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=80.75 E-value=8.1 Score=32.80 Aligned_cols=76 Identities=17% Similarity=0.097 Sum_probs=54.8
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----------CCCC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----------FPDG 225 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~~~~ 225 (371)
+++||=.|+ +|..+..+++.+ |++|+.++.++...+...+.++..+ .++.++..|+.+.. -..+
T Consensus 5 ~k~vlITGa-s~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (247)
T 3lyl_A 5 EKVALVTGA-SRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKG--FKARGLVLNISDIESIQNFFAEIKAENL 81 (247)
T ss_dssp TCEEEESSC-SSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHTTC
T ss_pred CCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 567777774 556666666555 8999999999988887777776655 47999999998742 0124
Q ss_pred ccceEEcccccc
Q 017428 226 QFDLVWSMESGE 237 (371)
Q Consensus 226 ~fD~v~~~~~l~ 237 (371)
..|+++.+..+.
T Consensus 82 ~id~li~~Ag~~ 93 (247)
T 3lyl_A 82 AIDILVNNAGIT 93 (247)
T ss_dssp CCSEEEECCCCC
T ss_pred CCCEEEECCCCC
Confidence 689988776543
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=80.50 E-value=2.1 Score=37.25 Aligned_cols=21 Identities=10% Similarity=0.320 Sum_probs=18.0
Q ss_pred HHHHHHHHHhcCCCcEEEEEe
Q 017428 243 SKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 243 ~~~l~~~~~~LkpgG~l~i~~ 263 (371)
...+.+++++|+|||.+++..
T Consensus 54 ~~~l~~~~~~Lk~~g~i~v~~ 74 (260)
T 1g60_A 54 YRWIDKVLDKLDKDGSLYIFN 74 (260)
T ss_dssp HHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHHhcCCeEEEEEc
Confidence 567888999999999998863
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=80.33 E-value=8.5 Score=33.22 Aligned_cols=102 Identities=20% Similarity=0.191 Sum_probs=63.2
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCC---HHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLS---PVQAQRANALAAARGLADKVSFQVGDALQQP-----F----- 222 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s---~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~----- 222 (371)
+++||=.|++ |..+..+++.+ |++|+.++.+ ...++...+.+...+ .++.++..|+.+.. +
T Consensus 11 ~k~vlVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~ 87 (262)
T 3ksu_A 11 NKVIVIAGGI-KNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQG--AKVALYQSDLSNEEEVAKLFDFAEK 87 (262)
T ss_dssp TCEEEEETCS-SHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTTT--CEEEEEECCCCSHHHHHHHHHHHHH
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHH
Confidence 6778877755 55666666666 7899998764 334444444444433 57889999998742 1
Q ss_pred CCCccceEEccccccCcC--------CHH-----------HHHHHHHHhcCCCcEEEEEe
Q 017428 223 PDGQFDLVWSMESGEHMP--------DKS-----------KFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 223 ~~~~fD~v~~~~~l~~~~--------~~~-----------~~l~~~~~~LkpgG~l~i~~ 263 (371)
.-+..|+++.+..+.... ++. .+.+.+...|+++|.++++.
T Consensus 88 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~is 147 (262)
T 3ksu_A 88 EFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIA 147 (262)
T ss_dssp HHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEC
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEe
Confidence 014689988776543221 111 23445556666788887764
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=80.14 E-value=13 Score=32.44 Aligned_cols=103 Identities=17% Similarity=0.132 Sum_probs=63.7
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHH-HHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC-----C
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQ-AQRANALAAARGLADKVSFQVGDALQQP-----FP-----D 224 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~-~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~-----~ 224 (371)
+++||=.|+ +|..+..+++.+ |++|+.++.++.. .+.+.+.+...+ .++.++..|+.+.. +. -
T Consensus 29 ~k~vlVTGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 105 (283)
T 1g0o_A 29 GKVALVTGA-GRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNG--SDAACVKANVGVVEDIVRMFEEAVKIF 105 (283)
T ss_dssp TCEEEETTT-TSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHHhC--CCeEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 566776664 566666666655 8899999887543 344444444433 46889999987642 10 1
Q ss_pred CccceEEccccccCcC-----C---HH-----------HHHHHHHHhcCCCcEEEEEec
Q 017428 225 GQFDLVWSMESGEHMP-----D---KS-----------KFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 225 ~~fD~v~~~~~l~~~~-----~---~~-----------~~l~~~~~~LkpgG~l~i~~~ 264 (371)
+..|+++.+..+.... + +. .+++.+.+.|+.+|.++.+..
T Consensus 106 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS 164 (283)
T 1g0o_A 106 GKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGS 164 (283)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECC
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEec
Confidence 4689988776544321 1 11 244566677777788887653
|
| >3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=80.09 E-value=5 Score=31.94 Aligned_cols=115 Identities=14% Similarity=0.146 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEE
Q 017428 135 RAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQ 213 (371)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~ 213 (371)
...|+..+........-- ..-|||+|-|+|..-..+.+.+ +..|+.+|-.-..-. ...|+.-.++
T Consensus 23 ltaQR~~L~~a~~~v~~~------~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR~~~~hp--------~~~P~~e~~i 88 (174)
T 3iht_A 23 MVSQRACLEHAIAQTAGL------SGPVYELGLGNGRTYHHLRQHVQGREIYVFERAVASHP--------DSTPPEAQLI 88 (174)
T ss_dssp HHHHHHHHHHHHHHTTTC------CSCEEEECCTTCHHHHHHHHHCCSSCEEEEESSCCCCG--------GGCCCGGGEE
T ss_pred HHHHHHHHHHHHHHhcCC------CCceEEecCCCChhHHHHHHhCCCCcEEEEEeeeccCC--------CCCCchHhee
Confidence 345556666666665432 4679999999999999999988 788999985321100 1134445567
Q ss_pred EcCCCCC-CC----CCCccceEEccccccCcCCH----HHHHHHHHHhcCCCcEEEEEe
Q 017428 214 VGDALQQ-PF----PDGQFDLVWSMESGEHMPDK----SKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 214 ~~d~~~~-~~----~~~~fD~v~~~~~l~~~~~~----~~~l~~~~~~LkpgG~l~i~~ 263 (371)
++|+.+. +. -....-++++-...++-..- ..+-.-+..+|.|||.++-..
T Consensus 89 lGdi~~tL~~~~~r~g~~a~LaHaD~G~g~~~~d~a~a~~lsplI~~~la~GGi~vS~~ 147 (174)
T 3iht_A 89 LGDIRETLPATLERFGATASLVHADLGGHNREKNDRFARLISPLIEPHLAQGGLMVSSD 147 (174)
T ss_dssp ESCHHHHHHHHHHHHCSCEEEEEECCCCSCHHHHHHHHHHHHHHHGGGEEEEEEEEESS
T ss_pred cccHHHHHHHHHHhcCCceEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCC
Confidence 7776553 21 02333344443333322111 123344567899999887654
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=80.02 E-value=11 Score=31.53 Aligned_cols=87 Identities=16% Similarity=0.174 Sum_probs=55.6
Q ss_pred EEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----CCCCccceEEcc
Q 017428 161 NVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----FPDGQFDLVWSM 233 (371)
Q Consensus 161 ~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~v~~~ 233 (371)
+|+=+|+ |.++..+++.+ +..|+++|.+++.++...+. .++.++.+|..+.. ..-..+|+|++.
T Consensus 2 ~iiIiG~--G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~-------~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~ 72 (218)
T 3l4b_C 2 KVIIIGG--ETTAYYLARSMLSRKYGVVIINKDRELCEEFAKK-------LKATIIHGDGSHKEILRDAEVSKNDVVVIL 72 (218)
T ss_dssp CEEEECC--HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHH-------SSSEEEESCTTSHHHHHHHTCCTTCEEEEC
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH-------cCCeEEEcCCCCHHHHHhcCcccCCEEEEe
Confidence 4666775 66776666655 78999999999877654432 14678999987742 112467888764
Q ss_pred ccccCcCCH--HHHHHHHHHhcCCCcEEEE
Q 017428 234 ESGEHMPDK--SKFVSELARVTAPAGTIII 261 (371)
Q Consensus 234 ~~l~~~~~~--~~~l~~~~~~LkpgG~l~i 261 (371)
. ++. ...+..+.+.+.|...++.
T Consensus 73 ~-----~~d~~n~~~~~~a~~~~~~~~iia 97 (218)
T 3l4b_C 73 T-----PRDEVNLFIAQLVMKDFGVKRVVS 97 (218)
T ss_dssp C-----SCHHHHHHHHHHHHHTSCCCEEEE
T ss_pred c-----CCcHHHHHHHHHHHHHcCCCeEEE
Confidence 2 222 3345555555666666655
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 371 | ||||
| d2o57a1 | 282 | c.66.1.18 (A:16-297) Putative sarcosine dimethylgl | 1e-28 | |
| d1nw3a_ | 328 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 1e-23 | |
| d1u2za_ | 406 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 6e-19 | |
| d1nkva_ | 245 | c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric | 2e-16 | |
| d1kpga_ | 285 | c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [ | 2e-15 | |
| d1kpia_ | 291 | c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [ | 3e-14 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 4e-13 | |
| d1l3ia_ | 186 | c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi | 9e-13 | |
| d1ri5a_ | 252 | c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf | 4e-12 | |
| d2frna1 | 260 | c.66.1.47 (A:19-278) Hypothetical protein PH0793 { | 5e-12 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 8e-12 | |
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 1e-11 | |
| d1jqea_ | 280 | c.66.1.19 (A:) Histamine methyltransferase {Human | 3e-11 | |
| d1vl5a_ | 231 | c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill | 1e-10 | |
| d2fyta1 | 311 | c.66.1.6 (A:238-548) Protein arginine N-methyltran | 1e-10 | |
| d1g6q1_ | 328 | c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba | 1e-10 | |
| d2fk8a1 | 280 | c.66.1.18 (A:22-301) Methoxy mycolic acid synthase | 4e-10 | |
| d2p7ia1 | 225 | c.66.1.41 (A:22-246) Hypothetical protein ECA1738 | 6e-10 | |
| d1g8aa_ | 227 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyro | 2e-09 | |
| d1yb2a1 | 250 | c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T | 4e-09 | |
| d2a14a1 | 257 | c.66.1.15 (A:5-261) Indolethylamine N-methyltransf | 6e-09 | |
| d2i6ga1 | 198 | c.66.1.44 (A:1-198) Putative methyltransferase Teh | 7e-09 | |
| d1i9ga_ | 264 | c.66.1.13 (A:) Probable methyltransferase Rv2118c | 1e-08 | |
| d1o54a_ | 266 | c.66.1.13 (A:) Hypothetical protein TM0748 {Thermo | 1e-08 | |
| d1y8ca_ | 246 | c.66.1.43 (A:) Putative methyltransferase CAC2371 | 2e-08 | |
| d1oria_ | 316 | c.66.1.6 (A:) Protein arginine N-methyltransferase | 2e-08 | |
| d1p91a_ | 268 | c.66.1.33 (A:) rRNA methyltransferase RlmA {Escher | 4e-08 | |
| d1xtpa_ | 254 | c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa | 4e-08 | |
| d2b25a1 | 324 | c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 | 5e-08 | |
| d1g8sa_ | 230 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth | 5e-08 | |
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 8e-08 | |
| d1pjza_ | 201 | c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse | 1e-07 | |
| d1qzza2 | 256 | c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase | 7e-07 | |
| d1ve3a1 | 226 | c.66.1.43 (A:2-227) Hypothetical protein PH0226 {A | 2e-06 | |
| d1nt2a_ | 209 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch | 3e-06 | |
| d2ex4a1 | 222 | c.66.1.42 (A:2-224) Adrenal gland protein AD-003 ( | 4e-06 | |
| d1tw3a2 | 253 | c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransf | 2e-05 | |
| d1yzha1 | 204 | c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltra | 5e-05 | |
| d2nxca1 | 254 | c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT | 7e-05 | |
| d2fcaa1 | 204 | c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltr | 1e-04 | |
| d1ne2a_ | 197 | c.66.1.32 (A:) Hypothetical protein Ta1320 {Archae | 4e-04 | |
| d2bzga1 | 229 | c.66.1.36 (A:17-245) Thiopurine S-methyltransferas | 0.001 |
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} Length = 282 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Score = 111 bits (276), Expect = 1e-28
Identities = 61/244 (25%), Positives = 103/244 (42%), Gaps = 15/244 (6%)
Query: 92 ARELKEGIAEFYD--ESSSLWEDIW-GDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRF 148
++ +K+ +YD +S + +W G+ +H G Y V + R A +R E
Sbjct: 1 SKTVKDNAEIYYDDDDSDRFYFHVWGGEDIHVGLY--KEPVDQDEIREASLRTDEWLASE 58
Query: 149 AGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLAD 208
+R +D+G G GG++R+L +KFG + ++PVQ +R GLAD
Sbjct: 59 L-AMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLAD 117
Query: 209 KVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRD 268
++ + G L+ P D +D +WS ++ H PDK K E ARV P G + I D
Sbjct: 118 NITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKED 177
Query: 269 LAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWP 328
++ ++ I D L S Y L + L ++ ++ +
Sbjct: 178 ---------GIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRTFSRPDSLVHHYS 228
Query: 329 AVIH 332
V
Sbjct: 229 KVKA 232
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Score = 97.6 bits (242), Expect = 1e-23
Identities = 35/269 (13%), Positives = 74/269 (27%), Gaps = 47/269 (17%)
Query: 93 RELKEGIAEFYDESSSLWEDI--------WGDHMHHGFYEPDSSVSVSDHRAAQVRMIEE 144
+ + + S+ L I D YEP S + ++ +
Sbjct: 86 KGTTQPMKLNTRPSTGLLRHILQQVYNHSVTDPEKLNNYEPFSPEV---YGETSFDLVAQ 142
Query: 145 TLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPV-------QAQR 196
+ +++D VD+G G+G +A G+ + + +
Sbjct: 143 MIDEIKMTDD-----DLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDRE 197
Query: 197 ANALAAARGLA-DKVSFQVGDALQQPFPDGQFDL-VWSMESGEHMPDKSKFVSELARVTA 254
G + + + GD L + + + + V + + P+ + E
Sbjct: 198 FRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMK 257
Query: 255 PAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDI 314
G I+ + AP + L I + V
Sbjct: 258 EGGRIV----SSKPFAPLNFRINSRN---LSDIGTIMRVVELSPLKGSV----------- 299
Query: 315 KAEDWSQNVAPFWPAVIHSALTWKGFTSL 343
W+ ++ I + F+SL
Sbjct: 300 ---SWTGKPVSYYLHTIDRTILENYFSSL 325
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 85.1 bits (210), Expect = 6e-19
Identities = 26/229 (11%), Positives = 63/229 (27%), Gaps = 42/229 (18%)
Query: 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRAN 198
+ + + + + T +D+G G+G A + G A G + +
Sbjct: 203 NFLSDVYQQCQLKKGDT-----FMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTI 257
Query: 199 ALAAARGLADK----------VSFQVGDALQQPFPD--GQFDLVWSMESGEHMPDKSKFV 246
K S + + Q D++ + + D +K V
Sbjct: 258 LQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVIL-VNNFLFDEDLNKKV 316
Query: 247 SELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLL 306
++ + II + L + + E + L
Sbjct: 317 EKILQTAKVGCKII----SLKSLRSLTYQINFYNVE------------------NIFNRL 354
Query: 307 QSLSLEDIK-AEDWSQNVAPFWPAVIHSALTWKGFTSLLRTEIFTGRKV 354
+ + + + W+ + ++ + + + F+ R G V
Sbjct: 355 KVQRYDLKEDSVSWTHSGGEYYISTVMEDVDESLFSPAARGRRNRGTPV 403
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Score = 76.2 bits (186), Expect = 2e-16
Identities = 41/210 (19%), Positives = 74/210 (35%), Gaps = 17/210 (8%)
Query: 128 SVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGI 187
++S S+HR EE G K ++D+G G G A+ G GI
Sbjct: 5 TISESEHRIHN-PFTEEKYATLGRVLRM-KPGTRILDLGSGSGEMLCTWARDHGITGTGI 62
Query: 188 TLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVS 247
+S + +A A G++++V F DA + + D+ + + +
Sbjct: 63 DMSSLFTAQAKRRAEELGVSERVHFIHNDA-AGYVANEKCDVAACVGATWIAGGFAGAEE 121
Query: 248 ELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQ 307
LA+ P G ++I R L +EE + + C + + V
Sbjct: 122 LLAQSLKPGGIMLIGEPYWRQLPATEE---------IAQACGVSSTSDFLTLPGLVGAFD 172
Query: 308 SLSLEDIKA-----EDWSQNVAPFWPAVIH 332
L + ++ E W + A W +
Sbjct: 173 DLGYDVVEMVLADQEGWDRYEAAKWLTMRR 202
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 73.4 bits (179), Expect = 2e-15
Identities = 35/177 (19%), Positives = 59/177 (33%), Gaps = 16/177 (9%)
Query: 96 KEGIAEFYDESSSLWEDIWGDHMHH--GFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSE 153
+ YD S + + ++E D + AQ+ I+ L G+
Sbjct: 7 FANVQAHYDLSDDFFRLFLDPTQTYSCAYFERDD----MTLQEAQIAKIDLALGKLGLQP 62
Query: 154 DPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQ 213
++DVGCG G + +K+ G+TLS QA L A
Sbjct: 63 G-----MTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVL 117
Query: 214 VGDALQQPFPDGQFDLVWSMESGEHMPDKS--KFVSELARVTAPAGTIIIVTWCHRD 268
+ D D + S+ + EH + F S R+ G +++ T
Sbjct: 118 LA---GWEQFDEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLH 171
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 291 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 70.3 bits (171), Expect = 3e-14
Identities = 36/202 (17%), Positives = 68/202 (33%), Gaps = 23/202 (11%)
Query: 97 EGIAEFYDESSSLWEDIWGDHMH--HGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSED 154
E + YD+S+ ++ M ++E AQ + L +
Sbjct: 7 EAVRSHYDKSNEFFKLWLDPSMTYSCAYFERPDM----TLEEAQYAKRKLALDKLNLEPG 62
Query: 155 PTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQV 214
++D+GCG G + R+ ++ G+TLS Q A+ + ++
Sbjct: 63 -----MTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRI 117
Query: 215 GDALQQPFPDGQFDLVWSMESGEHMPDK---------SKFVSELARVTAPAGTIIIVTWC 265
D D + S+ + EH D F + +T G +++ T
Sbjct: 118 ---QGWEEFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTIT 174
Query: 266 HRDLAPSEESLQPWEQELLKKI 287
D ++E LL+ I
Sbjct: 175 IPDKEEAQELGLTSPMSLLRFI 196
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 66.8 bits (162), Expect = 4e-13
Identities = 38/221 (17%), Positives = 68/221 (30%), Gaps = 12/221 (5%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216
+P ++VD GCG G L + + + A A R L F GD
Sbjct: 26 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGD 85
Query: 217 ALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT--WCHRDLAPSEE 274
A + D ++D+ HM + ++ G II W + +
Sbjct: 86 ATEIELND-KYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNMASYLLD 144
Query: 275 SLQPWEQELLKKICDAYYLPAWCSTAD------YVKLLQSLSLEDIKAEDWSQNVAPFWP 328
+ E L + + + D L L +++I+ + F
Sbjct: 145 GEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIPIYLSELGVKNIECRVSDK--VNFLD 202
Query: 329 AVIHSALTWKGFTSLLRTEIFTGRKVLLCNHIEEDFPNALS 369
+ +H + S L+ E G +E L+
Sbjct: 203 SNMHHNDKNDLYQS-LKEEGIAGDPGDKQQFVERLIARGLT 242
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 64.1 bits (155), Expect = 9e-13
Identities = 27/138 (19%), Positives = 43/138 (31%), Gaps = 4/138 (2%)
Query: 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANA 199
+R + + VDVGCG GG + + I +P
Sbjct: 15 GPTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLE-LAGRVRRVYAIDRNPEAISTTEM 73
Query: 200 LAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTI 259
GL D V+ GDA + D+ SG + + + + P G I
Sbjct: 74 NLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSGGELQE---ILRIIKDKLKPGGRI 130
Query: 260 IIVTWCHRDLAPSEESLQ 277
I+ + E L+
Sbjct: 131 IVTAILLETKFEAMECLR 148
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Score = 63.4 bits (153), Expect = 4e-12
Identities = 26/118 (22%), Positives = 44/118 (37%), Gaps = 5/118 (4%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216
KR +V+D+GCG GG + + G+ ++ V A A KV F+ D
Sbjct: 23 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQD 82
Query: 217 ALQQPF-PDGQFDLVWSMESGEHMP----DKSKFVSELARVTAPAGTIIIVTWCHRDL 269
+ + +FD++ S S + +AR P G I+ +
Sbjct: 83 SYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVI 140
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Score = 63.3 bits (153), Expect = 5e-12
Identities = 30/190 (15%), Positives = 57/190 (30%), Gaps = 16/190 (8%)
Query: 103 YDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQ-VRMIEETLRFAGVSEDPTKRPKN 161
+ +E ++G E + + ++E +R A K +
Sbjct: 55 GETRKPDYELLYGSDTVTVHVENGIKYKLDVAKIMFSPANVKERVRMA----KVAKPDEL 110
Query: 162 VVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP 221
VVD+ GIG S +A AK I P + + D++S D
Sbjct: 111 VVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDF- 169
Query: 222 FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQ 281
+ D + ++ +F+ + + I E+ +
Sbjct: 170 PGENIADRILMG----YVVRTHEFIPKALSIAKDGAIIHYHNTVP------EKLMPREPF 219
Query: 282 ELLKKICDAY 291
E K+I Y
Sbjct: 220 ETFKRITKEY 229
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 62.3 bits (150), Expect = 8e-12
Identities = 34/158 (21%), Positives = 66/158 (41%), Gaps = 8/158 (5%)
Query: 162 VVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP 221
V+D+G G G ++ + +C G+ + + A++ A +G+ + Q P
Sbjct: 20 VLDIGAGAGHTALAFSPY-VQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAE-SLP 77
Query: 222 FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQ 281
FPD FD++ + H D K V E+ARV G ++V P + L +
Sbjct: 78 FPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYA----PEDPVLDEF-V 132
Query: 282 ELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDW 319
L ++ D ++ S +++ + + L + W
Sbjct: 133 NHLNRLRDPSHVRES-SLSEWQAMFSANQLAYQDIQKW 169
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 62.7 bits (151), Expect = 1e-11
Identities = 35/186 (18%), Positives = 57/186 (30%), Gaps = 41/186 (22%)
Query: 96 KEGIAEFYDES--SSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVR-MIEETLRFAGVS 152
EGI + Y + + +W+ GD R A+ + + LR
Sbjct: 14 AEGIPDQYADGEAARVWQLYIGDT---------------RSRTAEYKAWLLGLLR----- 53
Query: 153 EDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSF 212
V+DV CG G S L ++ G + S + A R
Sbjct: 54 ---QHGCHRVLDVACGTGVDSIMLVEE-GFSVTSVDASDKMLKYALKERWNRRKEPAFDK 109
Query: 213 QVGDALQ-------QPFPDGQFDLVWSMESGEHMPDKS-------KFVSELARVTAPAGT 258
V + P DG ++ S H+PD + +A + P G
Sbjct: 110 WVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGL 169
Query: 259 IIIVTW 264
++I
Sbjct: 170 LVIDHR 175
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.8 bits (146), Expect = 3e-11
Identities = 27/201 (13%), Positives = 57/201 (28%), Gaps = 25/201 (12%)
Query: 130 SVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQ---- 185
+ S +++ L TK ++ +G G G + K A+
Sbjct: 12 NHSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCI 71
Query: 186 ---GITLSPVQAQRANALAAARGLADKVSFQ--------VGDALQQPFPDGQFDLVWSME 234
+ S Q + L A + V F + + ++D + ++
Sbjct: 72 NNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQ 131
Query: 235 SGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLP 294
++ D + + ++I+ W++ L KK +
Sbjct: 132 MLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGS---------SGWDK-LWKKYGSRFPQD 181
Query: 295 AWCSTADYVKLLQSLSLEDIK 315
C L Q L +K
Sbjct: 182 DLCQYITSDDLTQMLDNLGLK 202
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Score = 58.9 bits (141), Expect = 1e-10
Identities = 30/178 (16%), Positives = 61/178 (34%), Gaps = 13/178 (7%)
Query: 142 IEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALA 201
+ + ++ A + + + V+DV G G + A K L+ + A A
Sbjct: 4 LAKLMQIAALKGN-----EEVLDVATGGGHVANAFAPF-VKKVVAFDLTEDILKVARAFI 57
Query: 202 AARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIII 261
G Q + + + + H P+ + FVSE RV G +++
Sbjct: 58 EGNGHQQVEYVQGDAEQMPFTDERFHIVTCRI-AAHHFPNPASFVSEAYRVLKKGGQLLL 116
Query: 262 VTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDW 319
V + + E+E A+ +D++K+L+ E + +
Sbjct: 117 VDNSAPENDAFDVFYNYVEKERDYSHHRAW------KKSDWLKMLEEAGFELEELHCF 168
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.9 bits (144), Expect = 1e-10
Identities = 27/128 (21%), Positives = 48/128 (37%), Gaps = 5/128 (3%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216
+ K V+DVGCG G S + AK K G+ S +A + L D ++ G
Sbjct: 34 FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGK 92
Query: 217 ALQQPFPDGQFDLVWSMESGEHMPDKS---KFVSELARVTAPAGTIIIVTWCHRDLAPSE 273
+ P + D++ S G + +S + + A G + C L
Sbjct: 93 IEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGG-SVYPDICTISLVAVS 151
Query: 274 ESLQPWEQ 281
+ + ++
Sbjct: 152 DVNKHADR 159
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 59.5 bits (143), Expect = 1e-10
Identities = 31/132 (23%), Positives = 48/132 (36%), Gaps = 9/132 (6%)
Query: 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA 217
+ K V+DVGCG G S + AK G+ +S + A L G +DK++ G
Sbjct: 38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKL 96
Query: 218 LQQPFPDGQFDLVWSMESGEHMPDKSKFVS---ELARVTAPAGTII-----IVTWCHRDL 269
P + D++ S G + +S + G I I D
Sbjct: 97 EDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPDKCSIHLAGLEDS 156
Query: 270 APSEESLQPWEQ 281
+E L W+
Sbjct: 157 QYKDEKLNYWQD 168
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 57.6 bits (138), Expect = 4e-10
Identities = 33/236 (13%), Positives = 61/236 (25%), Gaps = 18/236 (7%)
Query: 103 YDESSSLWEDIWGDHMHH--GFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPK 160
YD S + + ++EP AQ ++ L +
Sbjct: 4 YDVSDDFFALFQDPTRTYSCAYFEPPE----LTLEEAQYAKVDLNLDKLDLKPG-----M 54
Query: 161 NVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220
++D+GCG G + R ++F G+TLS Q R + A+ +
Sbjct: 55 TLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF 114
Query: 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWE 280
P + + + E H F + G + + + +
Sbjct: 115 AEPVDRIVSIEAFEHFGHEN-YDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLS 173
Query: 281 QELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPAVIHSALT 336
E + I + + E V H T
Sbjct: 174 FETARFI-KFIVTEIFPGGRLPS-----TEMMVEHGEKAGFTVPEPLSLRPHYIKT 223
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Score = 56.5 bits (135), Expect = 6e-10
Identities = 27/215 (12%), Positives = 64/215 (29%), Gaps = 21/215 (9%)
Query: 155 PTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQV 214
P RP N++++G G + L + + S A++ A+G +
Sbjct: 17 PFFRPGNLLELGSFKGDFTSRLQEH-FNDITCVEASE------EAISHAQGRLKDGITYI 69
Query: 215 GDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELA-RVTAPAGTIIIVTWCHRDLAPSE 273
+ ++D + EH+ D + + A G + +V ++
Sbjct: 70 HSRFEDAQLPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQI 129
Query: 274 ESLQPWEQELLKKICDAYYLPAWC--STADYVKLLQSLSLEDIKAEDWSQNVAPFWPAVI 331
+ C + + L+ +
Sbjct: 130 AVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYRS-----------GIF 178
Query: 332 HSALTWKGFTSLLRTEIFTGRKVLLCNHIEEDFPN 366
AL + +L+T+I + + C + + +P+
Sbjct: 179 FKALANFQWDQILQTDILSKEYLDGCYQLGQQYPD 213
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 55.1 bits (132), Expect = 2e-09
Identities = 20/140 (14%), Positives = 43/140 (30%), Gaps = 5/140 (3%)
Query: 150 GVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRANALAAARGLA 207
G+ P K K+V+ +G G ++ +++ G K GI SP + + R
Sbjct: 65 GLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNI 124
Query: 208 DKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW-CH 266
+ + + D+++ + G +I
Sbjct: 125 VPILGDATKPEEYRALVPKVDVIFEDV--AQPTQAKILIDNAEVYLKRGGYGMIAVKSRS 182
Query: 267 RDLAPSEESLQPWEQELLKK 286
D+ E + + L +
Sbjct: 183 IDVTKEPEQVFREVERELSE 202
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Score = 54.3 bits (130), Expect = 4e-09
Identities = 20/123 (16%), Positives = 37/123 (30%), Gaps = 8/123 (6%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQ--GITLSPVQAQRANALAAARGLADKVSFQV 214
+ ++++VG G G S Y+ K + ++A + V
Sbjct: 84 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSR 143
Query: 215 GDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEE 274
D D +D V + +PD V ++A + P +
Sbjct: 144 SDI-ADFISDQMYDAVIA-----DIPDPWNHVQKIASMMKPGSVATFYLPNFDQSEKTVL 197
Query: 275 SLQ 277
SL
Sbjct: 198 SLS 200
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.9 bits (128), Expect = 6e-09
Identities = 17/175 (9%), Positives = 36/175 (20%), Gaps = 41/175 (23%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQV-- 214
+ ++D+G G A + + A + V
Sbjct: 50 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKF 109
Query: 215 -------------------------------GDALQQPFPDGQFDLVWSMESGEHMP--- 240
P D V ++ + E
Sbjct: 110 ACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSL 169
Query: 241 -DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPW----EQELLKKICDA 290
+ LA + P G ++ + + E+ + + DA
Sbjct: 170 DAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDA 224
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Score = 53.0 bits (126), Expect = 7e-09
Identities = 23/126 (18%), Positives = 39/126 (30%), Gaps = 5/126 (3%)
Query: 151 VSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKV 210
++ P +D+GCG G +S YLA A AA +
Sbjct: 23 LAAAKVVAPGRTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIKAAEGLDNLQT 82
Query: 211 SFQVGDALQQPFPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIVTWCHRD 268
+ L ++D + S + + ++ + R T P G +IV
Sbjct: 83 DLVDLNTLTFDG---EYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAMDTP 139
Query: 269 LAPSEE 274
P
Sbjct: 140 DFPCTV 145
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 53.1 bits (127), Expect = 1e-08
Identities = 19/110 (17%), Positives = 33/110 (30%), Gaps = 9/110 (8%)
Query: 160 KNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRA--NALAAARGLADKVSFQVG 215
V++ G G G + L + G + A+ A N D V
Sbjct: 98 ARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVS 157
Query: 216 DALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265
D PDG D M + + ++R+ G +++
Sbjct: 158 DLADSELPDGSVDRAV-----LDMLAPWEVLDAVSRLLVAGGVLMVYVAT 202
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Score = 52.8 bits (126), Expect = 1e-08
Identities = 21/111 (18%), Positives = 40/111 (36%), Gaps = 8/111 (7%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQ--GITLSPVQAQRANALAAARGLADKVSFQV 214
K ++D G G G LA+ G+ + A+ A + GL ++V+ +V
Sbjct: 102 KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKV 161
Query: 215 GDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265
D + F + D ++ +PD ++ + G V
Sbjct: 162 RDI-SEGFDEKDVDALF-----LDVPDPWNYIDKCWEALKGGGRFATVCPT 206
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Score = 52.4 bits (124), Expect = 2e-08
Identities = 24/253 (9%), Positives = 63/253 (24%), Gaps = 23/253 (9%)
Query: 102 FYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKN 161
Y++ + +++ + + + I E + +
Sbjct: 2 CYNKFAHIYDKLIRADVDY---------------KKWSDFIIEKCVENNLV------FDD 40
Query: 162 VVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP 221
+D+ CG G + L KF + ++ N + + +
Sbjct: 41 YLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINR 100
Query: 222 FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQ 281
D + S D K+ ++ G I + L+ +
Sbjct: 101 KFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYD 160
Query: 282 ELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPAVIHSALTWKGFT 341
+ + ++ E+ + + I L
Sbjct: 161 DDEVFYYWENQFEDDLVSMYISFFVRDGEFYKRFDEEHEER--AYKEEDIEKYLKHGQLN 218
Query: 342 SLLRTEIFTGRKV 354
L + + ++ +KV
Sbjct: 219 ILDKVDCYSNKKV 231
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 52.9 bits (126), Expect = 2e-08
Identities = 26/122 (21%), Positives = 43/122 (35%), Gaps = 5/122 (4%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216
+ K V+DVG G G + AK K GI S + A + A L V+ G
Sbjct: 32 FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGK 90
Query: 217 ALQQPFPDGQFDLVWSMESGEHM---PDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSE 273
+ P + D++ S G + + + + AP +I + E
Sbjct: 91 VEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAP-DGLIFPDRATLYVTAIE 149
Query: 274 ES 275
+
Sbjct: 150 DR 151
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Score = 51.5 bits (122), Expect = 4e-08
Identities = 41/182 (22%), Positives = 63/182 (34%), Gaps = 18/182 (9%)
Query: 149 AGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLA 207
A + E + V+D+GCG G + A G+ +S V + A
Sbjct: 75 AQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKA------AAKRY 128
Query: 208 DKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHR 267
+V+F V + + PF D D + + + ELARV P G +I T R
Sbjct: 129 PQVTFCVASSHRLPFSDTSMDAIIRIYAPCKA-------EELARVVKPGGWVITATPGPR 181
Query: 268 DLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFW 327
L E E+ A L + + +L + L +A Q W
Sbjct: 182 HL---MELKGLIYNEVHLHAPHAEQLEGF-TLQQSAELCYPMRLRGDEAVALLQMTPFAW 237
Query: 328 PA 329
A
Sbjct: 238 RA 239
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Score = 51.5 bits (122), Expect = 4e-08
Identities = 32/208 (15%), Positives = 60/208 (28%), Gaps = 25/208 (12%)
Query: 91 AARELKEGIAEFYDESSSLWEDIWG--DHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRF 148
+L + +Y ++ W + + G V D IE + F
Sbjct: 38 LTGDLYDPEKGWYGKALEYWRTVPATVSGVLGGM----DHVHDVD--------IEGSRNF 85
Query: 149 AGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLAD 208
++ P +D G GIG ++ L K A + + A
Sbjct: 86 --IASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAK---RELAGMP 140
Query: 209 KVSFQVGDALQQPFPDGQFDLVWSMESGEHM--PDKSKFVSELARVTAPAGTIIIVTWCH 266
F + P +DL+ + ++ D KF + P G I C
Sbjct: 141 VGKFILASMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCS 200
Query: 267 RD----LAPSEESLQPWEQELLKKICDA 290
+ + SL + + ++
Sbjct: 201 TGDRFLVDKEDSSLTRSDIHYKRLFNES 228
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.7 bits (123), Expect = 5e-08
Identities = 20/119 (16%), Positives = 30/119 (25%), Gaps = 19/119 (15%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRA----------NALAAAR 204
V++ G G GG S +L+K G + + A L+
Sbjct: 97 NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVE 156
Query: 205 GLADKVSFQVGDALQQP--FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIII 261
D V F D FD V M + + G +
Sbjct: 157 EWPDNVDFIHKDISGATEDIKSLTFDAVAL-----DMLNPHVTLPVFYPHLKHGGVCAV 210
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 50.9 bits (121), Expect = 5e-08
Identities = 17/139 (12%), Positives = 36/139 (25%), Gaps = 5/139 (3%)
Query: 148 FAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGL 206
G+ P KR ++ +G G + ++A I +P + A R
Sbjct: 64 IKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAEREN 123
Query: 207 ADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW-- 264
+ Q + + + E + G +I
Sbjct: 124 IIPILGDANK--PQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKAR 181
Query: 265 CHRDLAPSEESLQPWEQEL 283
+E + ++ L
Sbjct: 182 SIDVTKDPKEIFKEQKEIL 200
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 50.5 bits (119), Expect = 8e-08
Identities = 29/165 (17%), Positives = 54/165 (32%), Gaps = 20/165 (12%)
Query: 101 EFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPK 160
E Y + ++ I+ + + A++ +EE + ED + +
Sbjct: 3 ELYTLLAEYYDTIYRRRI--------------ERVKAEIDFVEEIFK-----EDAKREVR 43
Query: 161 NVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220
V+D+ CG G + + G + G+ L + A A R L + +
Sbjct: 44 RVLDLACGTGIPTLE-LAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAF 102
Query: 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265
+ +S D K S++A P G I C
Sbjct: 103 KNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC 147
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Score = 49.3 bits (116), Expect = 1e-07
Identities = 16/154 (10%), Positives = 35/154 (22%), Gaps = 20/154 (12%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKV------ 210
V+ CG +L+ + G G LS +R +
Sbjct: 19 VPGARVLVPLCGKSQDMSWLSGQ-GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVY 77
Query: 211 ------SFQVGDALQQPFPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIV 262
+ G + + +P ++V L + A + +++
Sbjct: 78 AAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLI 137
Query: 263 TWCHRDLAPSEESLQPWEQELLKKICDAYYLPAW 296
T + + W
Sbjct: 138 TLEYDQALLEGPPFSVPQTW-----LHRVMSGNW 166
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Score = 47.7 bits (112), Expect = 7e-07
Identities = 36/221 (16%), Positives = 64/221 (28%), Gaps = 12/221 (5%)
Query: 111 EDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIG 170
W D + S + + E ++V+DVG G G
Sbjct: 42 RPFWEDLSAD----VALADSFDALMSCDEDLAYEAP----ADAYDWSAVRHVLDVGGGNG 93
Query: 171 GSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLV 230
G +A + + A+RA A GLAD+V+ GD + L+
Sbjct: 94 GMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLL 153
Query: 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDA 290
+ D + R P G ++++ + + LL
Sbjct: 154 SFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRAD----VEGDGADRFFSTLLDLRMLT 209
Query: 291 YYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPAVI 331
+ + + V L S L PF +++
Sbjct: 210 FMGGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSIL 250
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 226 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 46.3 bits (108), Expect = 2e-06
Identities = 39/185 (21%), Positives = 71/185 (38%), Gaps = 11/185 (5%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216
K+ V+D+ CG+GG S L + + + + A A+ V F VGD
Sbjct: 36 KKRGKVLDLACGVGGFSFLLEDYG---FEVVGVDISEDMIRKAREYAKSRESNVEFIVGD 92
Query: 217 ALQQPFPDGQFDLVWSMESGEHMP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAP-SE 273
A + F D FD V ++S H + ++ E+ RV P+G I+ R+L P +
Sbjct: 93 ARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRLK 152
Query: 274 ESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPAVIHS 333
ESL ++ + K +P ++ ++ W + + +
Sbjct: 153 ESLVVGQKYWISK-----VIPDQEERTVVIEFKSEQDSFRVRFNVWGKTGVELLAKLYFT 207
Query: 334 ALTWK 338
+
Sbjct: 208 KEAEE 212
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 45.5 bits (107), Expect = 3e-06
Identities = 16/140 (11%), Positives = 38/140 (27%), Gaps = 6/140 (4%)
Query: 150 GVSEDPTKRPKNVVDVGCGIGGSSRYLAK-KFGAKCQGITLSPVQAQRANALAAARGLAD 208
+ + V+ +G G + +LA + S ++ L R
Sbjct: 48 KGHRLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN--- 104
Query: 209 KVSFQVGDALQQPFPDGQFDLVWSMESGEHMP-DKSKFVSELARVTAPAGTIIIVTW-CH 266
+ + DA + G + V + + G ++I+
Sbjct: 105 NIIPLLFDASKPWKYSGIVEKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMVKARS 164
Query: 267 RDLAPSEESLQPWEQELLKK 286
D E + + ++
Sbjct: 165 IDSTAEPEEVFKSVLKEMEG 184
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.2 bits (105), Expect = 4e-06
Identities = 34/203 (16%), Positives = 67/203 (33%), Gaps = 15/203 (7%)
Query: 94 ELKEGIAEFYDESSSLWEDIWG--DHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGV 151
E+ E +FY ++ + W+ I D M G+ +S D +++ +
Sbjct: 3 EVIEDEKQFYSKAKTYWKQIPPTVDGMLGGYGH----ISSIDINSSRKFLQRFLREGPN- 57
Query: 152 SEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVS 211
+D G GIG ++ L + + ++ +A G +
Sbjct: 58 ----KTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNY 113
Query: 212 FQVGDALQQPFPD-GQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRD-- 268
F G P PD + + ++F+ P G I+I ++
Sbjct: 114 FCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGV 173
Query: 269 -LAPSEESLQPWEQELLKKICDA 290
L + S+ + + IC A
Sbjct: 174 ILDDVDSSVCRDLDVVRRIICSA 196
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Score = 43.5 bits (101), Expect = 2e-05
Identities = 34/224 (15%), Positives = 69/224 (30%), Gaps = 13/224 (5%)
Query: 111 EDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIG 170
+ + D PD S A + + + ++V+DVG G G
Sbjct: 41 KPFYEDLAGR----PDLRASFDSLLACDQDVAFDAP----AAAYDWTNVRHVLDVGGGKG 92
Query: 171 GSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLV 230
G + +A++ + A + GL+D+V GD + ++
Sbjct: 93 GFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIIL 152
Query: 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDA 290
+ D + ++ A P G I+I + E+ + L
Sbjct: 153 SFVLLNWPDHDAVRILTRCAEALEPGGRILIH-----ERDDLHENSFNEQFTELDLRMLV 207
Query: 291 YYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPAVIHSA 334
+ A + + L S L + P+ +++ A
Sbjct: 208 FLGGALRTREKWDGLAASAGLVVEEVRQLPSPTIPYDLSLLVLA 251
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} Length = 204 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Score = 41.4 bits (96), Expect = 5e-05
Identities = 24/112 (21%), Positives = 36/112 (32%), Gaps = 10/112 (8%)
Query: 162 VVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQV-GDALQ 219
V+VG G G +AK+ GI + A G+ + V G L
Sbjct: 35 HVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLT 94
Query: 220 QPFPDGQFDLVWSMESGEHMPDKS--------KFVSELARVTAPAGTIIIVT 263
F DG+ D ++ S + F+ R+ G I T
Sbjct: 95 DYFEDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 146
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Score = 41.4 bits (96), Expect = 7e-05
Identities = 30/173 (17%), Positives = 54/173 (31%), Gaps = 7/173 (4%)
Query: 117 HMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYL 176
H + + + + A E T + V+D+G G G +
Sbjct: 79 APWHTWEGAEIPLVIEPGMAFGTGHHETTRLALKALARHLRPGDKVLDLGTGSGVLAIAA 138
Query: 177 AKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236
K G K G+ + P+ +A A A G+ + F G + P G FDL+ +
Sbjct: 139 EKL-GGKALGVDIDPMVLPQAEANAKRNGVRPR--FLEGSL-EAALPFGPFDLLVANLYA 194
Query: 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICD 289
E P G ++ E++ L++ +
Sbjct: 195 ELHAA---LAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEEAAE 244
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} Length = 204 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Score = 40.6 bits (94), Expect = 1e-04
Identities = 21/112 (18%), Positives = 33/112 (29%), Gaps = 10/112 (8%)
Query: 162 VVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQV-GDALQ 219
++VG G G +AK+ GI L A + + D L
Sbjct: 33 HIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLT 92
Query: 220 QPFPDGQFDLVWSMESGEHMPDKS--------KFVSELARVTAPAGTIIIVT 263
F G+ V+ S + F+ + V G+I T
Sbjct: 93 DVFEPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 144
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 197 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 38.9 bits (90), Expect = 4e-04
Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 9/73 (12%)
Query: 160 KNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219
++V+D G G G + + P +A+ A+ V+F V D +
Sbjct: 50 RSVIDAGTGNGILACGSYLLGAESVTAFDIDP------DAIETAKRNCGGVNFMVADVSE 103
Query: 220 QPFPDGQFDLVWS 232
G++D
Sbjct: 104 ---ISGKYDTWIM 113
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.6 bits (86), Expect = 0.001
Identities = 16/159 (10%), Positives = 38/159 (23%), Gaps = 25/159 (15%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGL---------- 206
K V CG ++ A G G+ +S + Q
Sbjct: 44 KSGLRVFFPLCGKAVEMKWFA-DRGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGT 102
Query: 207 ------ADKVSFQVGDALQQ-PFPDGQFDLVWSMESGEHM--PDKSKFVSELARVTAPAG 257
+ +S G+FD++W + + D+ + + +
Sbjct: 103 KVFKSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKF 162
Query: 258 TIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAW 296
++ + E+ + +
Sbjct: 163 QYLLCVLSYDPTKHPGPPFYVPHAEI-----ERLFGKIC 196
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 371 | |||
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 100.0 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.97 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.97 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.97 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.95 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.94 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.92 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.9 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.89 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.88 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.87 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.87 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.86 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.85 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.83 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.83 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.83 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.83 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.83 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.81 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.79 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.78 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.78 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.77 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.75 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.75 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.74 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.73 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.73 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.73 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.71 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.7 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.7 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.69 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.69 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.69 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.68 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.63 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.6 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.6 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.6 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.59 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.59 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.57 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.56 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.56 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.55 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.54 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.54 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 99.53 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 99.53 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.52 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.48 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.45 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.43 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.4 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 99.34 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.3 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 99.29 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.28 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.26 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 99.24 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 99.23 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.2 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.15 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 99.11 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.11 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 99.11 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 99.08 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.05 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.98 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 98.94 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.94 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.92 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.8 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 98.74 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.67 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.67 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.63 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.6 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.6 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.57 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.54 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.52 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 98.52 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.5 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 98.49 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.47 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.47 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.46 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.43 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.41 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 98.34 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 98.19 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 98.16 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 98.12 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 98.08 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.03 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.7 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 97.68 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.53 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 97.51 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 97.22 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 97.11 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 97.07 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.05 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 97.0 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.97 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 96.92 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.87 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 96.82 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 96.74 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 96.71 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 96.68 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 96.68 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 96.64 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 96.46 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 96.34 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 95.86 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 95.61 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 95.58 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 95.55 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 95.38 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 95.28 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 95.27 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 95.25 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 95.23 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 95.19 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 94.93 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 94.83 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 94.62 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 94.46 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 94.38 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 94.18 | |
| d1rjda_ | 328 | Leucine carboxy methyltransferase Ppm1 {Baker's ye | 93.09 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 92.97 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 92.37 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 92.17 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 91.68 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 91.61 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 91.57 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 91.38 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 91.24 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 91.22 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 91.22 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 89.77 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 89.4 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 89.22 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 89.16 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 88.69 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 88.58 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 88.49 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 87.04 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 86.86 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 86.75 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 86.43 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 86.31 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 86.06 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 85.53 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 85.15 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 84.76 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 84.29 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 84.09 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 84.07 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 83.87 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 83.87 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 82.97 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 82.78 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 82.1 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 81.73 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 81.7 | |
| d2drpa2 | 26 | Tramtrack protein (two zinc-finger peptide) {Droso | 81.16 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 80.51 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 80.13 |
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=100.00 E-value=2.7e-32 Score=247.42 Aligned_cols=221 Identities=26% Similarity=0.487 Sum_probs=174.6
Q ss_pred HHHHHHHHHHhcc--cchhhHhhh-cccccccccCCCCCcCcchHHHHHH----HHHHHHHHHcCCCCCCCCCCCEEEEE
Q 017428 93 RELKEGIAEFYDE--SSSLWEDIW-GDHMHHGFYEPDSSVSVSDHRAAQV----RMIEETLRFAGVSEDPTKRPKNVVDV 165 (371)
Q Consensus 93 ~~~~~~i~~~yd~--~~~~y~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~VLDl 165 (371)
..+.+++..|||. ...+|..+| ++++|.|||..+.+.. ...+++. .++..+....++++ +.+||||
T Consensus 2 ~~~~~~~~~~y~~~~~~~fy~~~w~g~~~h~G~~~~~~~~~--~~~~a~~~~~~~~~~~l~~~~~l~~-----~~~vLDi 74 (282)
T d2o57a1 2 KTVKDNAEIYYDDDDSDRFYFHVWGGEDIHVGLYKEPVDQD--EIREASLRTDEWLASELAMTGVLQR-----QAKGLDL 74 (282)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHTTSCCCSCCCCSSGGGS--CHHHHHHHHHHHHHHHHHHTTCCCT-----TCEEEEE
T ss_pred chHHHHHHHhcCCchhHHHHHHHcCCCCceeeecCCCCCCc--CHHHHHHHHHHHHHHHHHHhcCCCC-----CCEEEEe
Confidence 3567789999998 568898888 5789999998765433 2333333 34444444445554 8999999
Q ss_pred CCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccCcCCHHHH
Q 017428 166 GCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKF 245 (371)
Q Consensus 166 G~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~ 245 (371)
|||+|.++..++++++++|+|+|+|+.|++.|+++....|+.+++++..+|+.++|+++++||+|++..+++|++++..+
T Consensus 75 GcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l~h~~d~~~~ 154 (282)
T d2o57a1 75 GAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPDKLKV 154 (282)
T ss_dssp TCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESCGGGCSCHHHH
T ss_pred CCCCcHHHhhhhccCCcEEEEEeccchhhhhhhcccccccccccccccccccccccccccccchhhccchhhhccCHHHH
Confidence 99999999999998788999999999999999999999999899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEEEecCCcccC
Q 017428 246 VSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAP 325 (371)
Q Consensus 246 l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~~~~~~ 325 (371)
+++++++|||||++++.++........ ..+ ..+.. .+..+.+.+.+++.++++++||+++.+.+....+..
T Consensus 155 l~~~~~~LkpgG~l~~~~~~~~~~~~~-~~~----~~~~~----~~~~~~~~s~~~~~~~l~~~Gf~~i~~~d~~~~~~~ 225 (282)
T d2o57a1 155 FQECARVLKPRGVMAITDPMKEDGIDK-SSI----QPILD----RIKLHDMGSLGLYRSLAKECGLVTLRTFSRPDSLVH 225 (282)
T ss_dssp HHHHHHHEEEEEEEEEEEEEECTTCCG-GGG----HHHHH----HHTCSSCCCHHHHHHHHHHTTEEEEEEEECHHHHHH
T ss_pred HHHHHHhcCCCcEEEEEEeecCCCCch-hHH----HHHHH----HhccCCCCCHHHHHHHHHHcCCceEEEEECcHhHHH
Confidence 999999999999999998765443221 111 11221 223334568999999999999999998877666544
Q ss_pred ccHH
Q 017428 326 FWPA 329 (371)
Q Consensus 326 ~~~~ 329 (371)
++..
T Consensus 226 ~~~~ 229 (282)
T d2o57a1 226 HYSK 229 (282)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.97 E-value=2.3e-30 Score=232.96 Aligned_cols=214 Identities=19% Similarity=0.198 Sum_probs=173.9
Q ss_pred HHHHHHHhcccchhhHhhhcccccc--cccCCCCCcCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHH
Q 017428 96 KEGIAEFYDESSSLWEDIWGDHMHH--GFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSS 173 (371)
Q Consensus 96 ~~~i~~~yd~~~~~y~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~ 173 (371)
.++|+.|||..+++|..++++.+++ +||+.+.+. +.+++.++++.+++++.+++ +.+|||||||+|.++
T Consensus 7 ~~~i~~HYD~~~~fy~~~Lg~~~~YS~g~~~~~~~t----L~eAQ~~k~~~~~~~l~l~~-----G~~VLDiGCG~G~~a 77 (285)
T d1kpga_ 7 FANVQAHYDLSDDFFRLFLDPTQTYSCAYFERDDMT----LQEAQIAKIDLALGKLGLQP-----GMTLLDVGCGWGATM 77 (285)
T ss_dssp HHHHHHHHTSCHHHHTTTSCTTCCCSCCCCSSTTCC----HHHHHHHHHHHHHTTTTCCT-----TCEEEEETCTTSHHH
T ss_pred HHHHHHhcCCcHHHHHHhCCCCCcEeeEEeCCCCCC----HHHHHHHHHHHHHHHcCCCC-----CCEEEEecCcchHHH
Confidence 4579999999999999999998876 899765432 78999999999999999886 999999999999999
Q ss_pred HHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccCcC--CHHHHHHHHHH
Q 017428 174 RYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMP--DKSKFVSELAR 251 (371)
Q Consensus 174 ~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~ 251 (371)
+.+++.++++|+||++|+.|++.|+++++..++.+++++...|+.+++ ++||.|++..+++|+. +...+++++++
T Consensus 78 ~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~---~~fD~i~si~~~eh~~~~~~~~~~~~~~r 154 (285)
T d1kpga_ 78 MRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD---EPVDRIVSIGAFEHFGHERYDAFFSLAHR 154 (285)
T ss_dssp HHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---CCCSEEEEESCGGGTCTTTHHHHHHHHHH
T ss_pred HHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccc---ccccceeeehhhhhcCchhHHHHHHHHHh
Confidence 999998899999999999999999999999999999999999987764 7899999999999994 56899999999
Q ss_pred hcCCCcEEEEEeccCCCCCcCcc---ccChHH---HHHH-HHHhhccCCCCCCCHHHHHHHHHhCCCceEEEEecCCccc
Q 017428 252 VTAPAGTIIIVTWCHRDLAPSEE---SLQPWE---QELL-KKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVA 324 (371)
Q Consensus 252 ~LkpgG~l~i~~~~~~~~~~~~~---~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~~~~~ 324 (371)
+|||||.+++.+++......... ...... ..++ ..+.+.... .+.+++..+++++||+++++..+..++.
T Consensus 155 ~LkpgG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFpgg~l---Psl~~~~~~~e~agf~v~~~~~~~~hYa 231 (285)
T d1kpga_ 155 LLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRL---PSIPMVQECASANGFTVTRVQSLQPHYA 231 (285)
T ss_dssp HSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCC---CCHHHHHHHHHTTTCEEEEEEECHHHHH
T ss_pred hcCCCCcEEEEEEeccCchhhccccCCcchhhhchhhHHHHHhccCCCC---CChhhHHHHHHHhchhhcccccchhhHH
Confidence 99999999998875322110000 000000 1112 222333333 4889999999999999999988876653
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.97 E-value=8.5e-30 Score=229.93 Aligned_cols=257 Identities=16% Similarity=0.166 Sum_probs=191.0
Q ss_pred HHHHHHhcccchhhHhhhcccccc--cccCCCCCcCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHH
Q 017428 97 EGIAEFYDESSSLWEDIWGDHMHH--GFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSR 174 (371)
Q Consensus 97 ~~i~~~yd~~~~~y~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~ 174 (371)
+.|..|||..+++|..++++++++ +||+.+.+ .+.+++.++++.+++++.+++ +.+|||||||+|.++.
T Consensus 7 ~~i~~HYD~~~~fy~~~Lg~~~~YS~~~~~~~~~----tL~~Aq~~k~~~~~~~l~l~~-----G~~VLDiGCG~G~~~~ 77 (291)
T d1kpia_ 7 EAVRSHYDKSNEFFKLWLDPSMTYSCAYFERPDM----TLEEAQYAKRKLALDKLNLEP-----GMTLLDIGCGWGSTMR 77 (291)
T ss_dssp HHHHHHHTSCHHHHHHHSCTTCCCSCCCCSSTTC----CHHHHHHHHHHHHHHTTCCCT-----TCEEEEETCTTSHHHH
T ss_pred hHHHHhcCCCHHHHHHhcCCCCCeeeEEecCCCC----CHHHHHHHHHHHHHHhcCCCC-----CCEEEEecCcchHHHH
Confidence 569999999999999999998865 89986543 378999999999999999886 9999999999999999
Q ss_pred HHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccCcCC---------HHHH
Q 017428 175 YLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPD---------KSKF 245 (371)
Q Consensus 175 ~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~---------~~~~ 245 (371)
.++++++++|+|+++|+.|++.++++++..++..++.+...|... ++++||.|++..+++|+.+ ...+
T Consensus 78 ~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~---~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~ 154 (291)
T d1kpia_ 78 HAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEE---FDEPVDRIVSLGAFEHFADGAGDAGFERYDTF 154 (291)
T ss_dssp HHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGG---CCCCCSEEEEESCGGGTTCCSSCCSTTHHHHH
T ss_pred HHHHhcCcceeeccchHHHHHHHHHHHHhhccchhhhhhhhcccc---cccccceEeechhHHhcchhhhhhHHHHHHHH
Confidence 999988999999999999999999999999998899999888743 4689999999999999965 5899
Q ss_pred HHHHHHhcCCCcEEEEEeccCCCCCcCcc--ccCh-H---HHHHHH-HHhhccCCCCCCCHHHHHHHHHhCCCceEEEEe
Q 017428 246 VSELARVTAPAGTIIIVTWCHRDLAPSEE--SLQP-W---EQELLK-KICDAYYLPAWCSTADYVKLLQSLSLEDIKAED 318 (371)
Q Consensus 246 l~~~~~~LkpgG~l~i~~~~~~~~~~~~~--~~~~-~---~~~~~~-~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~ 318 (371)
+++++++|||||.+++..++......... ...+ . ...++. .+.+... ..+..++...++++||++++++.
T Consensus 155 f~~i~~~LkpgG~~~l~~i~~~~~~~~~~~~~~~p~~~~~~~~fi~kyiFpgg~---lps~~~~~~~~e~~gl~v~~~~~ 231 (291)
T d1kpia_ 155 FKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGGR---LPRISQVDYYSSNAGWKVERYHR 231 (291)
T ss_dssp HHHHHHTSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTCC---CCCHHHHHHHHHHHTCEEEEEEE
T ss_pred HHHHHHhCCCCCceEEEEEeccCcchhhhccCCCchhhcccchHHHHHhcCCCC---CCCHHHHHhhhcccccccceeee
Confidence 99999999999999999877543211000 0000 0 011222 2233333 34899999999999999999998
Q ss_pred cCCcccCccHHHHHhh-hcHHHHHHHHHhhcccchhHhHHHHHHHHcccccC
Q 017428 319 WSQNVAPFWPAVIHSA-LTWKGFTSLLRTEIFTGRKVLLCNHIEEDFPNALS 369 (371)
Q Consensus 319 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 369 (371)
+..++........+.. ..+..+..+.-..+- -.....+..+..+|+.|.+
T Consensus 232 ~~~hYa~TL~~W~~~f~~~~~ei~~l~g~~~~-r~W~~yl~~ce~~F~~~~~ 282 (291)
T d1kpia_ 232 IGANYVPTLNAWADALQAHKDEAIALKGQETC-DIYMHYLRGCSDLFRDKYT 282 (291)
T ss_dssp CGGGHHHHHHHHHHHHHHTHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTTSS
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHHHCCCC
Confidence 8877643322222211 112222222111111 1244556677778887764
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.97 E-value=1.8e-29 Score=227.23 Aligned_cols=250 Identities=15% Similarity=0.153 Sum_probs=182.6
Q ss_pred HHhcccchhhHhhhcccccc--cccCCCCCcCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHH
Q 017428 101 EFYDESSSLWEDIWGDHMHH--GFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAK 178 (371)
Q Consensus 101 ~~yd~~~~~y~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~ 178 (371)
.|||..+++|..+++++|++ +||+.+.+ .+.+++.++++.+++++.+++ +.+|||||||+|.++..+++
T Consensus 2 aHYD~~~~fy~~~ld~~m~YS~~~~~~~~~----tL~~AQ~~k~~~~~~~l~l~~-----g~~VLDiGCG~G~~a~~~a~ 72 (280)
T d2fk8a1 2 AHYDVSDDFFALFQDPTRTYSCAYFEPPEL----TLEEAQYAKVDLNLDKLDLKP-----GMTLLDIGCGWGTTMRRAVE 72 (280)
T ss_dssp GGGCCCHHHHTTTSCTTCCCSCCCCSSTTC----CHHHHHHHHHHHHHTTSCCCT-----TCEEEEESCTTSHHHHHHHH
T ss_pred CCccCcHHHHHHhCCCCCcEeeEEeCCCCC----CHHHHHHHHHHHHHHHcCCCC-----CCEEEEecCCchHHHHHHHH
Confidence 68999999999999998886 89986643 278899999999999998876 99999999999999999998
Q ss_pred HcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccCcC--CHHHHHHHHHHhcCCC
Q 017428 179 KFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMP--DKSKFVSELARVTAPA 256 (371)
Q Consensus 179 ~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~Lkpg 256 (371)
.++++|+|+|+|+.|++.|+++++..++..++.+...|..+. +++||.|++..+++|+. +...++++++++||||
T Consensus 73 ~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~---~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~Lkpg 149 (280)
T d2fk8a1 73 RFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF---AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPAD 149 (280)
T ss_dssp HHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC---CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTT
T ss_pred hCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh---ccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCC
Confidence 889999999999999999999999999988899988887765 37899999999999995 4589999999999999
Q ss_pred cEEEEEeccCCCCCcCccccCh------HHHHHHHH-HhhccCCCCCCCHHHHHHHHHhCCCceEEEEecCCcccC----
Q 017428 257 GTIIIVTWCHRDLAPSEESLQP------WEQELLKK-ICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAP---- 325 (371)
Q Consensus 257 G~l~i~~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~~~~~~---- 325 (371)
|.+++.+............... ....++.. +.+... ..+.+++.+.++++||++++++.+..++..
T Consensus 150 G~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~dfI~kyifPgg~---lPS~~~l~~~~e~aGf~v~~~~~~~~hYa~TL~~ 226 (280)
T d2fk8a1 150 GRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGR---LPSTEMMVEHGEKAGFTVPEPLSLRPHYIKTLRI 226 (280)
T ss_dssp CEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCC---CCCHHHHHHHHHHTTCBCCCCEECHHHHHHHHHH
T ss_pred ceEEEEEeeccCcchhhhcccccccccccccchhhhhccCCCc---ccchHhhhhhHHhhccccceeeecccCHHHHHHH
Confidence 9999987543221100000000 00112221 222222 348999999999999999998887655432
Q ss_pred ccHHHHHhhhcHHHHHHHHHhhcccchhHhHHHHHHHHcccccC
Q 017428 326 FWPAVIHSALTWKGFTSLLRTEIFTGRKVLLCNHIEEDFPNALS 369 (371)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 369 (371)
|...+.. .+..+..+.-..+- -+....+..+..+|+.|.+
T Consensus 227 W~~~f~~---~~~~i~~~~~~~~~-r~w~~yl~~c~~~F~~~~~ 266 (280)
T d2fk8a1 227 WGDTLQS---NKDKAIEVTSEEVY-NRYMKYLRGCEHYFTDEML 266 (280)
T ss_dssp HHHHHHH---THHHHHHHSCHHHH-HHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHH---HHHHHHHhcCHHHH-HHHHHHHHHHHHHHhCCCc
Confidence 2222211 11122111111111 1133456667778888865
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.95 E-value=9.4e-27 Score=204.19 Aligned_cols=168 Identities=23% Similarity=0.308 Sum_probs=135.4
Q ss_pred HHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC
Q 017428 142 IEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP 221 (371)
Q Consensus 142 ~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 221 (371)
+.++++.+++++ +.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|++++...+. ++++|.++|++++|
T Consensus 4 ~~~ll~~~~l~~-----~~rVLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~i~~A~~~~~~~~~-~~i~~~~~d~~~l~ 76 (231)
T d1vl5a_ 4 LAKLMQIAALKG-----NEEVLDVATGGGHVANAFAPF-VKKVVAFDLTEDILKVARAFIEGNGH-QQVEYVQGDAEQMP 76 (231)
T ss_dssp HHHHHHHHTCCS-----CCEEEEETCTTCHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCC-CCC
T ss_pred HHHHHHhcCCCC-----cCEEEEecccCcHHHHHHHHh-CCEEEEEECCHHHHhhhhhccccccc-cccccccccccccc
Confidence 456777788876 899999999999999999987 68999999999999999999998887 58999999999999
Q ss_pred CCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHH
Q 017428 222 FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTAD 301 (371)
Q Consensus 222 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (371)
+++++||+|++..+++|++|+..++++++++|||||++++.++..+... .+. .....+.......+. ..++.++
T Consensus 77 ~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~----~~~-~~~~~~~~~~~~~~~-~~~~~~~ 150 (231)
T d1vl5a_ 77 FTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPEND----AFD-VFYNYVEKERDYSHH-RAWKKSD 150 (231)
T ss_dssp SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBCSSH----HHH-HHHHHHHHHHCTTCC-CCCBHHH
T ss_pred ccccccccccccccccccCCHHHHHHHHHHhcCCCcEEEEEeCCCCCCH----HHH-HHHHHHHhhcccCcc-cCCCHHH
Confidence 9999999999999999999999999999999999999999886543211 111 111112222222222 3678999
Q ss_pred HHHHHHhCCCceEEEEecCCc
Q 017428 302 YVKLLQSLSLEDIKAEDWSQN 322 (371)
Q Consensus 302 ~~~ll~~aGF~~v~~~~~~~~ 322 (371)
+.++|+++||+++++..+...
T Consensus 151 ~~~~l~~aGf~~~~~~~~~~~ 171 (231)
T d1vl5a_ 151 WLKMLEEAGFELEELHCFHKT 171 (231)
T ss_dssp HHHHHHHHTCEEEEEEEEEEE
T ss_pred HHHHHHHCCCEEEEEEEeecC
Confidence 999999999999887765443
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.94 E-value=1e-25 Score=198.13 Aligned_cols=170 Identities=22% Similarity=0.400 Sum_probs=137.9
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (371)
...-+++.+.+++ +.+|||||||+|.++..+++. +.+|+|||+|+.|++.|++++...++ +++.++++|++++
T Consensus 4 ~~~~l~~~~~~~~-----~~rILDiGcGtG~~~~~la~~-~~~v~gvD~S~~~l~~A~~~~~~~~~-~~~~~~~~d~~~~ 76 (234)
T d1xxla_ 4 SLGLMIKTAECRA-----EHRVLDIGAGAGHTALAFSPY-VQECIGVDATKEMVEVASSFAQEKGV-ENVRFQQGTAESL 76 (234)
T ss_dssp HHHHHHHHHTCCT-----TCEEEEESCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHHTC-CSEEEEECBTTBC
T ss_pred HHHHHHHHhCCCC-----CCEEEEeCCcCcHHHHHHHHh-CCeEEEEeCChhhhhhhhhhhccccc-ccccccccccccc
Confidence 4455677788876 999999999999999999987 67999999999999999999998887 5799999999999
Q ss_pred CCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHH
Q 017428 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTA 300 (371)
Q Consensus 221 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (371)
|+++++||+|++.++++|++|+..++++++++|||||++++.++..+.. ..+..+... +.......+. ...+..
T Consensus 77 ~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~-~~~~~~ 150 (234)
T d1xxla_ 77 PFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPED----PVLDEFVNH-LNRLRDPSHV-RESSLS 150 (234)
T ss_dssp CSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBCSS----HHHHHHHHH-HHHHHCTTCC-CCCBHH
T ss_pred cccccccceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEEcCCCCC----HHHHHHHHH-HHhhCCCccc-ccCCHH
Confidence 9999999999999999999999999999999999999999988654321 112222222 2222222222 246899
Q ss_pred HHHHHHHhCCCceEEEEecCCcc
Q 017428 301 DYVKLLQSLSLEDIKAEDWSQNV 323 (371)
Q Consensus 301 ~~~~ll~~aGF~~v~~~~~~~~~ 323 (371)
++..+++++||.+.++..+..+.
T Consensus 151 ~~~~~~~~~gf~~~~~~~~~~~~ 173 (234)
T d1xxla_ 151 EWQAMFSANQLAYQDIQKWNLPI 173 (234)
T ss_dssp HHHHHHHHTTEEEEEEEEEEEEE
T ss_pred HHHHHHHHCCCceeEEEEeeCcc
Confidence 99999999999988877766544
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=1e-24 Score=192.98 Aligned_cols=165 Identities=18% Similarity=0.208 Sum_probs=135.9
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (371)
.+..+...+.+.+ +.+|||||||+|..+..+++.++++|+|||+|+.|++.|+++....++.++++|.++|+.++
T Consensus 21 ~~~~l~~~~~l~p-----g~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~ 95 (245)
T d1nkva_ 21 KYATLGRVLRMKP-----GTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY 95 (245)
T ss_dssp HHHHHHHHTCCCT-----TCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC
T ss_pred HHHHHHHHcCCCC-----CCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhc
Confidence 5566777777775 89999999999999999998878899999999999999999999999988999999999987
Q ss_pred CCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHH
Q 017428 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTA 300 (371)
Q Consensus 221 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (371)
+++++||+|++..+++|++|+..++++++++|||||++++.+......... ..............+.+..
T Consensus 96 -~~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ 165 (245)
T d1nkva_ 96 -VANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPAT---------EEIAQACGVSSTSDFLTLP 165 (245)
T ss_dssp -CCSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCCSS---------HHHHHTTTCSCGGGSCCHH
T ss_pred -cccCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEeccccCCCCh---------HHHHHHhccCCCcccCCHH
Confidence 467999999999999999999999999999999999999988654332211 1122222222222356899
Q ss_pred HHHHHHHhCCCceEEEEecC
Q 017428 301 DYVKLLQSLSLEDIKAEDWS 320 (371)
Q Consensus 301 ~~~~ll~~aGF~~v~~~~~~ 320 (371)
++...++++||+++......
T Consensus 166 ~~~~~~~~aG~~~v~~~~~~ 185 (245)
T d1nkva_ 166 GLVGAFDDLGYDVVEMVLAD 185 (245)
T ss_dssp HHHHHHHTTTBCCCEEEECC
T ss_pred HHHHHHHHcCCEEEEEEeCC
Confidence 99999999999988776543
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.90 E-value=3.6e-23 Score=178.24 Aligned_cols=137 Identities=20% Similarity=0.205 Sum_probs=110.4
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 238 (371)
..+|||||||+|.++..+. +++|||+|+.|++.|+++ ++.+.++|++++++++++||+|++..+++|
T Consensus 37 ~~~vLDiGcG~G~~~~~~~-----~~~giD~s~~~~~~a~~~--------~~~~~~~d~~~l~~~~~~fD~I~~~~~l~h 103 (208)
T d1vlma_ 37 EGRGVEIGVGTGRFAVPLK-----IKIGVEPSERMAEIARKR--------GVFVLKGTAENLPLKDESFDFALMVTTICF 103 (208)
T ss_dssp SSCEEEETCTTSTTHHHHT-----CCEEEESCHHHHHHHHHT--------TCEEEECBTTBCCSCTTCEEEEEEESCGGG
T ss_pred CCeEEEECCCCcccccccc-----eEEEEeCChhhccccccc--------cccccccccccccccccccccccccccccc
Confidence 5689999999999887763 468999999999998873 689999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhcc---CCCCCCCHHHHHHHHHhCCCceEE
Q 017428 239 MPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAY---YLPAWCSTADYVKLLQSLSLEDIK 315 (371)
Q Consensus 239 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ll~~aGF~~v~ 315 (371)
++|+..++++++++|+|||.+++.++..... ............ ....+++.+++.++|+++||++++
T Consensus 104 ~~d~~~~l~~~~~~L~pgG~l~i~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~ 173 (208)
T d1vlma_ 104 VDDPERALKEAYRILKKGGYLIVGIVDRESF----------LGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFK 173 (208)
T ss_dssp SSCHHHHHHHHHHHEEEEEEEEEEEECSSSH----------HHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEE
T ss_pred ccccccchhhhhhcCCCCceEEEEecCCcch----------hHHhhhhccccccccccccCCCHHHHHHHHHHcCCeEEE
Confidence 9999999999999999999999988643221 111112211111 111357999999999999999888
Q ss_pred EEe
Q 017428 316 AED 318 (371)
Q Consensus 316 ~~~ 318 (371)
+..
T Consensus 174 v~~ 176 (208)
T d1vlma_ 174 VVQ 176 (208)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=9.4e-23 Score=177.48 Aligned_cols=144 Identities=15% Similarity=0.169 Sum_probs=119.0
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
++.+|||||||+|.++..++.....+|+|||+|+.|++.|++++...+. .+++|.++|++++++++++||+|++..+++
T Consensus 60 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~-~~~~f~~~d~~~~~~~~~~fD~I~~~~~l~ 138 (222)
T d2ex4a1 60 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK-RVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 138 (222)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGG-GEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccc-cccccccccccccccccccccccccccccc
Confidence 4789999999999999998766567899999999999999999877765 478999999999988889999999999999
Q ss_pred CcCCH--HHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEE
Q 017428 238 HMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIK 315 (371)
Q Consensus 238 ~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~ 315 (371)
|+++. ..++++++++|||||.+++.+........ +. .......++.+++.++++++||++++
T Consensus 139 h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~----~~------------~~~~~~~~~~~~~~~l~~~aGf~ii~ 202 (222)
T d2ex4a1 139 HLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVI----LD------------DVDSSVCRDLDVVRRIICSAGLSLLA 202 (222)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEE----EE------------TTTTEEEEBHHHHHHHHHHTTCCEEE
T ss_pred cchhhhhhhHHHHHHHhcCCcceEEEEEcccccccc----cc------------cCCceeeCCHHHHHHHHHHcCCEEEE
Confidence 99875 57999999999999999999865432110 00 00001134789999999999999998
Q ss_pred EEe
Q 017428 316 AED 318 (371)
Q Consensus 316 ~~~ 318 (371)
.+.
T Consensus 203 ~~~ 205 (222)
T d2ex4a1 203 EER 205 (222)
T ss_dssp EEE
T ss_pred EEE
Confidence 765
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.88 E-value=7e-22 Score=175.29 Aligned_cols=171 Identities=19% Similarity=0.233 Sum_probs=131.2
Q ss_pred HHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 017428 142 IEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (371)
Q Consensus 142 ~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (371)
...++..+.+.. ..+|||||||+|.++..+++++ +.+++++|+ +.+++.+++++...++.++++++.+|+.+.
T Consensus 69 ~~~~~~~~d~~~-----~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~ 142 (253)
T d1tw3a2 69 FDAPAAAYDWTN-----VRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP 142 (253)
T ss_dssp THHHHHHSCCTT-----CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC
T ss_pred HHHHHhhcCCcc-----CCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhh
Confidence 345566666654 7899999999999999999998 789999998 678999999999999989999999998763
Q ss_pred CCCCCccceEEccccccCcCCH--HHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHH-HHHHhhccCCCCCC
Q 017428 221 PFPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQEL-LKKICDAYYLPAWC 297 (371)
Q Consensus 221 ~~~~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 297 (371)
.+ .+||+|++.+++||+++. ..+|++++++|||||+|+|.+....... ......... +.......+ ...
T Consensus 143 -~~-~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~----~~~~~~~~~dl~~~~~~~g--~~r 214 (253)
T d1tw3a2 143 -LP-RKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHEN----SFNEQFTELDLRMLVFLGG--ALR 214 (253)
T ss_dssp -CS-SCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGG----CCSHHHHHHHHHHHHHHSC--CCC
T ss_pred -cc-cchhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEeccCCCCC----cchhHHHHhhHHHHhhCCC--cCC
Confidence 23 579999999999999765 5789999999999999999986432211 111111111 110111111 235
Q ss_pred CHHHHHHHHHhCCCceEEEEecCCcccCc
Q 017428 298 STADYVKLLQSLSLEDIKAEDWSQNVAPF 326 (371)
Q Consensus 298 ~~~~~~~ll~~aGF~~v~~~~~~~~~~~~ 326 (371)
+.++|.++|+++||+++++..+..+..++
T Consensus 215 t~~e~~~ll~~AGf~~~~v~~~~~p~~~~ 243 (253)
T d1tw3a2 215 TREKWDGLAASAGLVVEEVRQLPSPTIPY 243 (253)
T ss_dssp BHHHHHHHHHHTTEEEEEEEEEECSSSSC
T ss_pred CHHHHHHHHHHCCCeEEEEEECCCCCCCc
Confidence 89999999999999999999887776654
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.87 E-value=7.2e-22 Score=175.08 Aligned_cols=156 Identities=16% Similarity=0.134 Sum_probs=122.4
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 017428 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (371)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (371)
.....+++.+... +..+|||+|||+|.++..++..+...|++||+|+.|++.|++++... ++++|.++|+.+
T Consensus 80 ~~s~~fl~~l~~~-----~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~---~~~~~~~~d~~~ 151 (254)
T d1xtpa_ 80 EGSRNFIASLPGH-----GTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMET 151 (254)
T ss_dssp HHHHHHHHTSTTC-----CCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGG
T ss_pred HHHHHHHhhCCCC-----CCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhcccccc---ccceeEEccccc
Confidence 3445566666544 37899999999999999988776668999999999999999876433 368999999999
Q ss_pred CCCCCCccceEEccccccCcCCH--HHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCC
Q 017428 220 QPFPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWC 297 (371)
Q Consensus 220 ~~~~~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (371)
+++++++||+|++..+++|+++. ..++++++++|+|||.+++.+........... ........
T Consensus 152 ~~~~~~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d---------------~~d~~~~r 216 (254)
T d1xtpa_ 152 ATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVD---------------KEDSSLTR 216 (254)
T ss_dssp CCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEE---------------TTTTEEEB
T ss_pred cccCCCccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcceec---------------ccCCceeC
Confidence 98888999999999999999875 58899999999999999998864432211100 00000135
Q ss_pred CHHHHHHHHHhCCCceEEEEe
Q 017428 298 STADYVKLLQSLSLEDIKAED 318 (371)
Q Consensus 298 ~~~~~~~ll~~aGF~~v~~~~ 318 (371)
+.+.++++++++||++++.+.
T Consensus 217 s~~~~~~l~~~aGf~ii~~~~ 237 (254)
T d1xtpa_ 217 SDIHYKRLFNESGVRVVKEAF 237 (254)
T ss_dssp CHHHHHHHHHHHTCCEEEEEE
T ss_pred CHHHHHHHHHHcCCEEEEEEe
Confidence 889999999999999988764
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.87 E-value=1.9e-21 Score=169.48 Aligned_cols=158 Identities=15% Similarity=0.133 Sum_probs=118.2
Q ss_pred CCCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSME 234 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~ 234 (371)
++.+|||||||+|..+..+++.. +++|+|+|+|+.|++.|+++++..+...++.+..+|+.+.+ .+.+|+|++..
T Consensus 39 ~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~--~~~~d~i~~~~ 116 (225)
T d1im8a_ 39 ADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE--IKNASMVILNF 116 (225)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCC--CCSEEEEEEES
T ss_pred CCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccc--cccceeeEEee
Confidence 47899999999999999999854 67999999999999999999988877778888888887765 46789999999
Q ss_pred cccCcC--CHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHh-hcc----------CCCCCCCHHH
Q 017428 235 SGEHMP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKIC-DAY----------YLPAWCSTAD 301 (371)
Q Consensus 235 ~l~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----------~~~~~~~~~~ 301 (371)
+++|++ ++..++++++++|||||.+++.+...............+...+..... ... ......+.++
T Consensus 117 ~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 196 (225)
T d1im8a_ 117 TLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEVSQKRTALENVMRTDSIET 196 (225)
T ss_dssp CGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCCSSHHHHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCCCHHH
T ss_pred eccccChhhHHHHHHHHHHhCCCCceeecccccccccchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccCCCCHHH
Confidence 999984 788999999999999999999986543322111111111111100000 000 0012368999
Q ss_pred HHHHHHhCCCceEEEE
Q 017428 302 YVKLLQSLSLEDIKAE 317 (371)
Q Consensus 302 ~~~ll~~aGF~~v~~~ 317 (371)
+.++|+++||+.|++.
T Consensus 197 ~~~~L~~aGF~~v~~~ 212 (225)
T d1im8a_ 197 HKVRLKNVGFSQVELW 212 (225)
T ss_dssp HHHHHHHHTCSEEEEE
T ss_pred HHHHHHHcCCCceEEe
Confidence 9999999999988763
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.86 E-value=5.2e-21 Score=172.20 Aligned_cols=159 Identities=19% Similarity=0.201 Sum_probs=118.1
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES 235 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~ 235 (371)
++.+|||||||+|.++..+++.+ +.+|+|+|+|+.+++.|++++...+. +++|.+.|+.+++++ ++||+|++..+
T Consensus 27 ~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~--~~~f~~~d~~~~~~~-~~fD~v~~~~~ 103 (281)
T d2gh1a1 27 KPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEIELN-DKYDIAICHAF 103 (281)
T ss_dssp SCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS--EEEEEESCTTTCCCS-SCEEEEEEESC
T ss_pred CcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc--ccccccccccccccc-CCceEEEEehh
Confidence 47899999999999999999876 57899999999999999999887663 799999999998875 67999999999
Q ss_pred ccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCC----CC---cCcccc-C-hHHHHHHHHHhhccCCCCCCCHHHHHHHH
Q 017428 236 GEHMPDKSKFVSELARVTAPAGTIIIVTWCHRD----LA---PSEESL-Q-PWEQELLKKICDAYYLPAWCSTADYVKLL 306 (371)
Q Consensus 236 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~----~~---~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 306 (371)
++|++++..++++++++|||||.+++.+..... .. .....+ . ......+.......+.. .....++..+|
T Consensus 104 l~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~l~~~l 182 (281)
T d2gh1a1 104 LLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKD-GNIGMKIPIYL 182 (281)
T ss_dssp GGGCSSHHHHHHHHHHTEEEEEEEEEEECCHHHHHTSEEETTSCHHHHCCHHHHHHHHHHHHHTTCCC-TTGGGTHHHHH
T ss_pred hhcCCCHHHHHHHHHHHcCcCcEEEEEECCccccchhhccCchhhhhhhhHHHHHHHHHHHHHHcCCC-CCHHHHHHHHH
Confidence 999999999999999999999999998842110 00 000000 0 01112222222222211 12235678899
Q ss_pred HhCCCceEEEEecC
Q 017428 307 QSLSLEDIKAEDWS 320 (371)
Q Consensus 307 ~~aGF~~v~~~~~~ 320 (371)
+++||+++++....
T Consensus 183 ~eaGf~~i~~~~~~ 196 (281)
T d2gh1a1 183 SELGVKNIECRVSD 196 (281)
T ss_dssp HHTTCEEEEEEECC
T ss_pred HHcCCeEEEEEEec
Confidence 99999999876543
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.85 E-value=4.5e-21 Score=167.05 Aligned_cols=145 Identities=12% Similarity=0.085 Sum_probs=113.5
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 238 (371)
+.+|||||||+|.++..+++. +.+|+|||+|+.+++.|+++. ..++.+..+|+.+.++ +++||+|++.++++|
T Consensus 21 ~~~VLDiGcG~G~~~~~l~~~-g~~v~giD~s~~~i~~a~~~~-----~~~~~~~~~~~~~~~~-~~~fD~I~~~~vleh 93 (225)
T d2p7ia1 21 PGNLLELGSFKGDFTSRLQEH-FNDITCVEASEEAISHAQGRL-----KDGITYIHSRFEDAQL-PRRYDNIVLTHVLEH 93 (225)
T ss_dssp SSCEEEESCTTSHHHHHHTTT-CSCEEEEESCHHHHHHHHHHS-----CSCEEEEESCGGGCCC-SSCEEEEEEESCGGG
T ss_pred CCcEEEEeCCCcHHHHHHHHc-CCeEEEEeCcHHHhhhhhccc-----cccccccccccccccc-ccccccccccceeEe
Confidence 678999999999999999886 678999999999999998763 3579999999988775 589999999999999
Q ss_pred cCCHHHHHHHHH-HhcCCCcEEEEEeccCCCCC----------cCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Q 017428 239 MPDKSKFVSELA-RVTAPAGTIIIVTWCHRDLA----------PSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQ 307 (371)
Q Consensus 239 ~~~~~~~l~~~~-~~LkpgG~l~i~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 307 (371)
++|+..++.+++ ++|+|||.+++..+...... .....+.. ..........++.++++++++
T Consensus 94 ~~d~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~h~~~~~~~~l~~~l~ 165 (225)
T d2p7ia1 94 IDDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTE--------AEFAHGHRCTYALDTLERDAS 165 (225)
T ss_dssp CSSHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCH--------HHHHTTCCCCCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCc--------cccceeeeeccCHHHHHHHHH
Confidence 999999999998 79999999999875322110 00000000 000111223679999999999
Q ss_pred hCCCceEEEEe
Q 017428 308 SLSLEDIKAED 318 (371)
Q Consensus 308 ~aGF~~v~~~~ 318 (371)
++||++++...
T Consensus 166 ~~Gf~i~~~~~ 176 (225)
T d2p7ia1 166 RAGLQVTYRSG 176 (225)
T ss_dssp HTTCEEEEEEE
T ss_pred HCCCEEEEEEE
Confidence 99999988764
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.83 E-value=3.3e-20 Score=161.09 Aligned_cols=105 Identities=31% Similarity=0.494 Sum_probs=95.9
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
+..+|||||||+|.++..+++. +.+|+|+|+|+.|++.|++++...+ .++.++.+|+.++++++++||+|++..+++
T Consensus 37 ~~~~ILDiGcG~G~~~~~la~~-~~~v~giD~S~~~i~~ak~~~~~~~--~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~ 113 (226)
T d1ve3a1 37 KRGKVLDLACGVGGFSFLLEDY-GFEVVGVDISEDMIRKAREYAKSRE--SNVEFIVGDARKLSFEDKTFDYVIFIDSIV 113 (226)
T ss_dssp SCCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCTTSCCSCTTCEEEEEEESCGG
T ss_pred CCCEEEEECCCcchhhhhHhhh-hcccccccccccchhhhhhhhcccc--ccccccccccccccccCcCceEEEEecchh
Confidence 3789999999999999999986 7899999999999999999998876 468899999999999999999999999999
Q ss_pred CcC--CHHHHHHHHHHhcCCCcEEEEEecc
Q 017428 238 HMP--DKSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 238 ~~~--~~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
|++ ++..+++++.++|||||.+++..++
T Consensus 114 ~~~~~d~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 114 HFEPLELNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp GCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hCChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence 997 5678999999999999999987653
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.83 E-value=1e-19 Score=161.19 Aligned_cols=166 Identities=22% Similarity=0.205 Sum_probs=124.6
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC
Q 017428 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP 221 (371)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 221 (371)
..+++..++.. ..+|||||||+|.++..+++++ +.+++++|+ +.+++.++++++..++.+++.+..+|+.+ +
T Consensus 71 ~~~~~~~d~~~-----~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~-~ 143 (256)
T d1qzza2 71 EAPADAYDWSA-----VRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-P 143 (256)
T ss_dssp HHHHHTSCCTT-----CCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-C
T ss_pred HHHHhcCCCcc-----CCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccc-c
Confidence 44555555544 6899999999999999999998 789999998 78999999999999988899999999876 3
Q ss_pred CCCCccceEEccccccCcCCH--HHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHH--HhhccCCCCCC
Q 017428 222 FPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKK--ICDAYYLPAWC 297 (371)
Q Consensus 222 ~~~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 297 (371)
.+ ..||+|++.+++|++++. ..+|++++++|||||+|+|.+........ ........+.- .....+ ...
T Consensus 144 ~p-~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~----~~~~~~~~~d~~ml~~~~g--~~r 216 (256)
T d1qzza2 144 LP-VTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDG----ADRFFSTLLDLRMLTFMGG--RVR 216 (256)
T ss_dssp CS-CCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-----------HHHHHHHHHHHHHHHSC--CCC
T ss_pred cc-ccchhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEeccCCCCc----ccHHHHHHHHHHHHhhCCC--ccC
Confidence 44 469999999999999765 57899999999999999999864322111 11111111111 011111 235
Q ss_pred CHHHHHHHHHhCCCceEEEEecCCc
Q 017428 298 STADYVKLLQSLSLEDIKAEDWSQN 322 (371)
Q Consensus 298 ~~~~~~~ll~~aGF~~v~~~~~~~~ 322 (371)
|.++|.++|+++||+++++......
T Consensus 217 t~~e~~~ll~~AGf~~~~~~~~~~~ 241 (256)
T d1qzza2 217 TRDEVVDLAGSAGLALASERTSGST 241 (256)
T ss_dssp CHHHHHHHHHTTTEEEEEEEEECCS
T ss_pred CHHHHHHHHHHCCCceeEEEEeCCc
Confidence 8999999999999999998765443
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.83 E-value=2e-20 Score=164.67 Aligned_cols=98 Identities=28% Similarity=0.391 Sum_probs=88.0
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcc-cccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSM-ESGE 237 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~-~~l~ 237 (371)
+.+|||+|||+|.++..+++. +++|+|+|+|+.|++.|+++. . ..++.+|++++++++++||+|++. .+++
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~l~~a~~~~----~---~~~~~~~~~~l~~~~~~fD~ii~~~~~~~ 114 (246)
T d2avna1 43 PCRVLDLGGGTGKWSLFLQER-GFEVVLVDPSKEMLEVAREKG----V---KNVVEAKAEDLPFPSGAFEAVLALGDVLS 114 (246)
T ss_dssp CCEEEEETCTTCHHHHHHHTT-TCEEEEEESCHHHHHHHHHHT----C---SCEEECCTTSCCSCTTCEEEEEECSSHHH
T ss_pred CCEEEEECCCCchhccccccc-ceEEEEeeccccccccccccc----c---cccccccccccccccccccceeeecchhh
Confidence 789999999999999999986 789999999999999998852 2 236789999999999999999975 6899
Q ss_pred CcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 238 HMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 238 ~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
|++|+..+++++.++|||||.+++...
T Consensus 115 ~~~d~~~~l~~i~r~Lk~gG~~ii~~~ 141 (246)
T d2avna1 115 YVENKDKAFSEIRRVLVPDGLLIATVD 141 (246)
T ss_dssp HCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhhhHHHHHHHHHhhcCcCcEEEEEEC
Confidence 999999999999999999999999764
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.83 E-value=1.9e-20 Score=165.60 Aligned_cols=140 Identities=26% Similarity=0.422 Sum_probs=111.1
Q ss_pred HHhcccchhhHhhhcccccccccCCCCCcCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc
Q 017428 101 EFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF 180 (371)
Q Consensus 101 ~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~ 180 (371)
++|+..++.|+.++..... ........+..++.....++ +.+|||||||+|..+..+++.
T Consensus 3 ~~~~~~a~~Yd~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~-----~~~iLDiGcGtG~~~~~l~~~- 62 (251)
T d1wzna1 3 ELYTLLAEYYDTIYRRRIE--------------RVKAEIDFVEEIFKEDAKRE-----VRRVLDLACGTGIPTLELAER- 62 (251)
T ss_dssp GGGTTTGGGHHHHTHHHHH--------------THHHHHHHHHHHHHHTCSSC-----CCEEEEETCTTCHHHHHHHHT-
T ss_pred chhHhhHHHHHHHHHhhhh--------------hHHHHHHHHHHHHHHhcCCC-----CCEEEEeCCCCCccchhhccc-
Confidence 4677777777776543211 01223345666676666554 789999999999999999987
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcc-ccccCc--CCHHHHHHHHHHhcCCCc
Q 017428 181 GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSM-ESGEHM--PDKSKFVSELARVTAPAG 257 (371)
Q Consensus 181 ~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~-~~l~~~--~~~~~~l~~~~~~LkpgG 257 (371)
+.+|+|||+|+.|++.|+++++..+. ++.+.++|+++++++ ++||+|++. .+++|+ ++...+|++++++|||||
T Consensus 63 ~~~v~gvD~s~~mi~~a~~~~~~~~~--~i~~~~~d~~~l~~~-~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG 139 (251)
T d1wzna1 63 GYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIAFK-NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGG 139 (251)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCCCC-SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEE
T ss_pred ceEEEEEeeccccccccccccccccc--cchheehhhhhcccc-cccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCc
Confidence 78999999999999999999988774 799999999999876 689999986 566776 356789999999999999
Q ss_pred EEEEEe
Q 017428 258 TIIIVT 263 (371)
Q Consensus 258 ~l~i~~ 263 (371)
.+++..
T Consensus 140 ~lii~~ 145 (251)
T d1wzna1 140 VFITDF 145 (251)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 998854
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.83 E-value=3.6e-20 Score=163.41 Aligned_cols=101 Identities=21% Similarity=0.293 Sum_probs=88.9
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcc-cccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSM-ESGE 237 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~-~~l~ 237 (371)
+.+|||||||+|..+..+++. +.+|+|+|+|+.|++.|++++...+. +++++++|+.++++ +++||+|++. .+++
T Consensus 38 ~~~vLDiGCG~G~~~~~l~~~-g~~v~GvD~S~~ml~~A~~~~~~~~~--~v~~~~~d~~~~~~-~~~fD~i~~~~~~~~ 113 (246)
T d1y8ca_ 38 FDDYLDLACGTGNLTENLCPK-FKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLNI-NRKFDLITCCLDSTN 113 (246)
T ss_dssp TTEEEEETCTTSTTHHHHGGG-SSEEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCCC-SCCEEEEEECTTGGG
T ss_pred CCeEEEEeCcCCHHHHHHHHh-CCccEeeccchhhhhhccccccccCc--cceeeccchhhhcc-cccccccceeeeeee
Confidence 679999999999999999987 78999999999999999999988775 69999999998875 4789999975 5777
Q ss_pred CcC---CHHHHHHHHHHhcCCCcEEEEEe
Q 017428 238 HMP---DKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 238 ~~~---~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
|+. +...++++++++|||||.+++..
T Consensus 114 ~~~~~~~~~~~l~~~~~~LkpgG~~i~~~ 142 (246)
T d1y8ca_ 114 YIIDSDDLKKYFKAVSNHLKEGGVFIFDI 142 (246)
T ss_dssp GCCSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 775 45679999999999999999743
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.81 E-value=3.4e-19 Score=151.88 Aligned_cols=137 Identities=23% Similarity=0.365 Sum_probs=108.7
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 238 (371)
+.+|||||||+|..+..++++ +.+|+|+|+|+.+++.++++.+..++ +++++...|+...++ +++||+|++..+++|
T Consensus 31 ~grvLDiGcG~G~~~~~la~~-g~~v~gvD~s~~~l~~a~~~~~~~~~-~~~~~~~~d~~~~~~-~~~fD~I~~~~~~~~ 107 (198)
T d2i6ga1 31 PGRTLDLGCGNGRNSLYLAAN-GYDVTAWDKNPASMANLERIKAAEGL-DNLQTDLVDLNTLTF-DGEYDFILSTVVMMF 107 (198)
T ss_dssp SCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTC-TTEEEEECCTTTCCC-CCCEEEEEEESCGGG
T ss_pred CCcEEEECCCCCHHHHHHHHH-hhhhccccCcHHHHHHHHHHhhhccc-cchhhhheecccccc-cccccEEEEeeeeec
Confidence 569999999999999999987 78999999999999999999999888 489999999998875 688999999999999
Q ss_pred cCC--HHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEE
Q 017428 239 MPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKA 316 (371)
Q Consensus 239 ~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~ 316 (371)
+++ ...++++++++|+|||++++..+......+ .....+..++..++.+++ +||+++..
T Consensus 108 ~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~el~~~~--~~~~i~~~ 168 (198)
T d2i6ga1 108 LEAQTIPGLIANMQRCTKPGGYNLIVAAMDTPDFP-----------------CTVGFPFAFKEGELRRYY--EGWDMLKY 168 (198)
T ss_dssp SCTTHHHHHHHHHHHTEEEEEEEEEEEEBC--------------------------CCCCBCTTHHHHHT--TTSEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEEecCCccCC-----------------CCCCCCCccCHHHHHHHh--CCCeEEEe
Confidence 964 468999999999999999998764322111 001111234566677776 68887754
Q ss_pred E
Q 017428 317 E 317 (371)
Q Consensus 317 ~ 317 (371)
.
T Consensus 169 ~ 169 (198)
T d2i6ga1 169 N 169 (198)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=1.2e-18 Score=156.58 Aligned_cols=149 Identities=15% Similarity=0.196 Sum_probs=110.3
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-------CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEE--EcCCCC------CCC
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF-------GAKCQGITLSPVQAQRANALAAARGLADKVSFQ--VGDALQ------QPF 222 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~-------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~--~~d~~~------~~~ 222 (371)
+..+|||||||+|.++..+++.+ ...++|||+|+.|++.|+++++.....+++.+. ..++++ .+.
T Consensus 40 ~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (280)
T d1jqea_ 40 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKK 119 (280)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSS
T ss_pred CCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccC
Confidence 45689999999999988887653 236899999999999999998765433455543 333321 245
Q ss_pred CCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhcc---CCCCCCCH
Q 017428 223 PDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAY---YLPAWCST 299 (371)
Q Consensus 223 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 299 (371)
++++||+|++.++++|++|+..++++++++|+|||.+++..+.... .+ ..++......+ ....+.+.
T Consensus 120 ~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~~~~---------~~-~~l~~~~~~~~~~~~~~~~~~~ 189 (280)
T d1jqea_ 120 ELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSS---------GW-DKLWKKYGSRFPQDDLCQYITS 189 (280)
T ss_dssp SCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTTS---------HH-HHHHHHHGGGSCCCTTSCCCCH
T ss_pred CCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEecCcc---------hH-HHHHHHHHHhcCCCcccccCCH
Confidence 6799999999999999999999999999999999999998754321 11 23333333222 12235789
Q ss_pred HHHHHHHHhCCCceEEE
Q 017428 300 ADYVKLLQSLSLEDIKA 316 (371)
Q Consensus 300 ~~~~~ll~~aGF~~v~~ 316 (371)
+++.++|++.||..+..
T Consensus 190 ~~~~~~L~~~G~~~~~~ 206 (280)
T d1jqea_ 190 DDLTQMLDNLGLKYECY 206 (280)
T ss_dssp HHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHCCCceEEE
Confidence 99999999999986543
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.78 E-value=7e-19 Score=149.34 Aligned_cols=152 Identities=14% Similarity=0.132 Sum_probs=115.2
Q ss_pred HHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCC-----------CCCe
Q 017428 142 IEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGL-----------ADKV 210 (371)
Q Consensus 142 ~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----------~~~v 210 (371)
+.+.+..+.+.+ +.+|||+|||+|..+..|+++ |.+|+|+|+|+.|++.|+++.+..+. ..++
T Consensus 9 ~~~~~~~l~~~~-----~~rvLd~GCG~G~~a~~la~~-G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (201)
T d1pjza_ 9 LQQYWSSLNVVP-----GARVLVPLCGKSQDMSWLSGQ-GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGI 82 (201)
T ss_dssp HHHHHHHHCCCT-----TCEEEETTTCCSHHHHHHHHH-CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSS
T ss_pred HHHHHHHcCCCC-----CCEEEEecCcCCHHHHHHHHc-CCceEeecccHHHHHHHHHHhccccchhhhhhhhhcccccc
Confidence 344455555554 899999999999999999997 89999999999999999998855432 2356
Q ss_pred EEEEcCCCCCC-CCCCccceEEccccccCcCC--HHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHH
Q 017428 211 SFQVGDALQQP-FPDGQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKI 287 (371)
Q Consensus 211 ~~~~~d~~~~~-~~~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (371)
.+..+|+.+++ .....||+|++..+++|+.+ ...+++++.++|||||.+++.........+.
T Consensus 83 ~~~~~d~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~~~~~~~--------------- 147 (201)
T d1pjza_ 83 EIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALLE--------------- 147 (201)
T ss_dssp EEEEECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSS---------------
T ss_pred ceecccccccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEcccccccCC---------------
Confidence 78899988875 34578999999999999964 5789999999999999998877654332211
Q ss_pred hhccCCCCCCCHHHHHHHHHhCCCceEEEEec
Q 017428 288 CDAYYLPAWCSTADYVKLLQSLSLEDIKAEDW 319 (371)
Q Consensus 288 ~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~ 319 (371)
..+...+.+++++++. .+|.+..++..
T Consensus 148 ----~p~~~~~~~el~~l~~-~~~~i~~~~~~ 174 (201)
T d1pjza_ 148 ----GPPFSVPQTWLHRVMS-GNWEVTKVGGQ 174 (201)
T ss_dssp ----SCCCCCCHHHHHHTSC-SSEEEEEEEES
T ss_pred ----CccccCCHHHHHHHhC-CCcEEEEEEEe
Confidence 1111357788887774 67776555443
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=1.3e-19 Score=160.65 Aligned_cols=151 Identities=11% Similarity=-0.030 Sum_probs=109.7
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCC----------------------------
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADK---------------------------- 209 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~---------------------------- 209 (371)
++.+|||||||+|.++..++.....+|+|+|+|+.|++.|+++++.......
T Consensus 51 ~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (257)
T d2a14a1 51 QGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAA 130 (257)
T ss_dssp CEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhhh
Confidence 4789999999999998877766445799999999999999999876542110
Q ss_pred e-EEEEcCC----CCCCCCCCccceEEccccccCcC----CHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHH
Q 017428 210 V-SFQVGDA----LQQPFPDGQFDLVWSMESGEHMP----DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWE 280 (371)
Q Consensus 210 v-~~~~~d~----~~~~~~~~~fD~v~~~~~l~~~~----~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~ 280 (371)
+ .....+. ...+++.++||+|++..+++|+. +...+++++.++|||||.+++.++.........
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~------- 203 (257)
T d2a14a1 131 VKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVG------- 203 (257)
T ss_dssp EEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEET-------
T ss_pred hhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccceec-------
Confidence 0 1122222 12356678999999999999995 457899999999999999999886543211000
Q ss_pred HHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEEEecCCcc
Q 017428 281 QELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNV 323 (371)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~~~~ 323 (371)
...+. ...++.++++++|++|||++++++......
T Consensus 204 -------~~~~~-~~~~~~~~~~~~l~~aGf~v~~~~~~~~~~ 238 (257)
T d2a14a1 204 -------KREFS-CVALEKGEVEQAVLDAGFDIEQLLHSPQSY 238 (257)
T ss_dssp -------TEEEE-CCCCCHHHHHHHHHHTTEEEEEEEEECCCC
T ss_pred -------ccccc-ccCCCHHHHHHHHHHCCCEEEEEEEecccc
Confidence 01111 125789999999999999999886655443
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.77 E-value=1.4e-18 Score=153.66 Aligned_cols=107 Identities=23% Similarity=0.249 Sum_probs=93.4
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC-CCCccceEEccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF-PDGQFDLVWSMESG 236 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~v~~~~~l 236 (371)
++.+|||||||+|..+..+++....+|+|||+|+.|++.|+++....+...++.|.++|+...++ .+++||+|++..++
T Consensus 24 ~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~~l 103 (252)
T d1ri5a_ 24 RGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSF 103 (252)
T ss_dssp TTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESCG
T ss_pred CcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEccee
Confidence 37899999999999999998874468999999999999999999888777789999999977664 46789999999999
Q ss_pred cCcC----CHHHHHHHHHHhcCCCcEEEEEec
Q 017428 237 EHMP----DKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 237 ~~~~----~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
||+. +...+++++.++|||||++++..+
T Consensus 104 ~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~ 135 (252)
T d1ri5a_ 104 HYAFSTSESLDIAQRNIARHLRPGGYFIMTVP 135 (252)
T ss_dssp GGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred eecCCCHHHHHHHHHHHhceeCCCCEEEEEec
Confidence 9983 346799999999999999998653
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=3.4e-18 Score=148.94 Aligned_cols=139 Identities=14% Similarity=0.164 Sum_probs=109.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcC----------------CCCCeEEEEcCCCCCC
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARG----------------LADKVSFQVGDALQQP 221 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~----------------~~~~v~~~~~d~~~~~ 221 (371)
++.+|||+|||+|..+..|++. |.+|+|||+|+.+++.|+++..... ...++.+.++|+.+++
T Consensus 45 ~~~rvLd~GCG~G~~a~~LA~~-G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~ 123 (229)
T d2bzga1 45 SGLRVFFPLCGKAVEMKWFADR-GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLP 123 (229)
T ss_dssp CSCEEEETTCTTCTHHHHHHHT-TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGGG
T ss_pred CCCEEEEeCCCCcHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhhcc
Confidence 3889999999999999999997 8999999999999999988754321 1247899999998874
Q ss_pred -CCCCccceEEccccccCcC--CHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCC
Q 017428 222 -FPDGQFDLVWSMESGEHMP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCS 298 (371)
Q Consensus 222 -~~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (371)
...+.||+|+...+++|++ +...+++++.++|||||.+++..+....... .+.|...+
T Consensus 124 ~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~-------------------~gpp~~~~ 184 (229)
T d2bzga1 124 RTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKH-------------------PGPPFYVP 184 (229)
T ss_dssp GSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTTC-------------------CCSSCCCC
T ss_pred ccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcccCCCCC-------------------CCCCCCCC
Confidence 5578999999999999994 5688999999999999999888765433211 11222468
Q ss_pred HHHHHHHHHhCCCceEEEE
Q 017428 299 TADYVKLLQSLSLEDIKAE 317 (371)
Q Consensus 299 ~~~~~~ll~~aGF~~v~~~ 317 (371)
.+++.+++.. +|.+..++
T Consensus 185 ~~el~~lf~~-~~~i~~le 202 (229)
T d2bzga1 185 HAEIERLFGK-ICNIRCLE 202 (229)
T ss_dssp HHHHHHHHTT-TEEEEEEE
T ss_pred HHHHHHHhcC-CCEEEEEE
Confidence 9999999965 67654444
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.75 E-value=6.3e-18 Score=146.62 Aligned_cols=144 Identities=13% Similarity=0.081 Sum_probs=113.0
Q ss_pred CCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-CCCCccce
Q 017428 152 SEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-FPDGQFDL 229 (371)
Q Consensus 152 ~~~~~~~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~ 229 (371)
...+..|+.+|||||||+|..+..+++.. +..|+|+|+|+.|++.+++++... +++.++..|..... +.+..+|+
T Consensus 68 ~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~---~ni~~i~~d~~~~~~~~~~~~~v 144 (230)
T d1g8sa_ 68 KVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANKPQEYANIVEKV 144 (230)
T ss_dssp CCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTCGGGGTTTCCCE
T ss_pred HhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhh---cccceEEEeeccCccccccccee
Confidence 33445569999999999999999999976 579999999999999999886543 47888998987753 45677888
Q ss_pred EEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhC
Q 017428 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSL 309 (371)
Q Consensus 230 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~a 309 (371)
+++...+++..+...++.++++.|||||.+++.......... ... . ...++..+.|+++
T Consensus 145 ~~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~-----~~~-~---------------~~~~e~~~~L~~a 203 (230)
T d1g8sa_ 145 DVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVT-----KDP-K---------------EIFKEQKEILEAG 203 (230)
T ss_dssp EEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSS-----SCH-H---------------HHHHHHHHHHHHH
T ss_pred EEeeccccchHHHHHHHHHHHHhcccCceEEEEeeccccCCC-----CCH-H---------------HHHHHHHHHHHHc
Confidence 888888888888999999999999999999998754321110 000 0 1235778999999
Q ss_pred CCceEEEEec
Q 017428 310 SLEDIKAEDW 319 (371)
Q Consensus 310 GF~~v~~~~~ 319 (371)
||++++..++
T Consensus 204 GF~ive~idL 213 (230)
T d1g8sa_ 204 GFKIVDEVDI 213 (230)
T ss_dssp TEEEEEEEEC
T ss_pred CCEEEEEecC
Confidence 9999988764
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=1e-17 Score=148.81 Aligned_cols=150 Identities=11% Similarity=-0.023 Sum_probs=107.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCC-----------------------------
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLAD----------------------------- 208 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~----------------------------- 208 (371)
++.+|||||||+|......+.....+|+|+|+|+.|++.++++++.....-
T Consensus 54 ~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (263)
T d2g72a1 54 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRAR 133 (263)
T ss_dssp CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHH
T ss_pred CCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhhh
Confidence 478999999999988766555545689999999999999998875432110
Q ss_pred CeEEEEcCCCCC------CCCCCccceEEccccccCcC----CHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccCh
Q 017428 209 KVSFQVGDALQQ------PFPDGQFDLVWSMESGEHMP----DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQP 278 (371)
Q Consensus 209 ~v~~~~~d~~~~------~~~~~~fD~v~~~~~l~~~~----~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~ 278 (371)
.......|+... +.+.++||+|++..+++|+. +...++++++++|||||.|++............
T Consensus 134 ~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~----- 208 (263)
T d2g72a1 134 VKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAG----- 208 (263)
T ss_dssp EEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEET-----
T ss_pred hhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccC-----
Confidence 012345566442 23457899999999999984 457899999999999999999875432211000
Q ss_pred HHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEEEecCCc
Q 017428 279 WEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQN 322 (371)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~~~ 322 (371)
...+. ...++.+++.++|+++||++++++....+
T Consensus 209 ---------~~~~~-~~~~t~e~v~~~l~~aGf~v~~~~~~~~~ 242 (263)
T d2g72a1 209 ---------EARLT-VVPVSEEEVREALVRSGYKVRDLRTYIMP 242 (263)
T ss_dssp ---------TEEEE-CCCCCHHHHHHHHHHTTEEEEEEEEEECC
T ss_pred ---------Ccccc-cCCCCHHHHHHHHHHCCCeEEEEEEeecc
Confidence 00111 12479999999999999999887655443
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.73 E-value=1.2e-17 Score=148.73 Aligned_cols=110 Identities=25% Similarity=0.358 Sum_probs=92.8
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC
Q 017428 139 VRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA 217 (371)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~ 217 (371)
..+...+...++. ++.+|||||||+|.++..+++.+ +..++|+|+|+.|++.|+++. +++.|.++|+
T Consensus 71 ~~~~~~l~~~~~~------~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~------~~~~~~~~d~ 138 (268)
T d1p91a_ 71 DAIVAQLRERLDD------KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY------PQVTFCVASS 138 (268)
T ss_dssp HHHHHHHHHHSCT------TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC------TTSEEEECCT
T ss_pred HHHHHHHHHhcCC------CCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc------ccccceeeeh
Confidence 3344444455443 37899999999999999999987 679999999999999998753 5799999999
Q ss_pred CCCCCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCC
Q 017428 218 LQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHR 267 (371)
Q Consensus 218 ~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 267 (371)
.++|+++++||+|++.++++| ++++.|+|||||++++..+...
T Consensus 139 ~~l~~~~~sfD~v~~~~~~~~-------~~e~~rvLkpgG~l~~~~p~~~ 181 (268)
T d1p91a_ 139 HRLPFSDTSMDAIIRIYAPCK-------AEELARVVKPGGWVITATPGPR 181 (268)
T ss_dssp TSCSBCTTCEEEEEEESCCCC-------HHHHHHHEEEEEEEEEEEECTT
T ss_pred hhccCCCCCEEEEeecCCHHH-------HHHHHHHhCCCcEEEEEeeCCc
Confidence 999999999999999988876 5789999999999999986543
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.73 E-value=9.6e-18 Score=141.23 Aligned_cols=112 Identities=24% Similarity=0.328 Sum_probs=97.7
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC
Q 017428 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF 222 (371)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 222 (371)
..++.++.+.+ +.+|||+|||+|.+++.+++. ..+|+|+|+++.+++.|+++++..++.++++++++|+.+...
T Consensus 23 ~~il~~l~~~~-----g~~VLDiGcGsG~~s~~lA~~-~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~ 96 (186)
T d1l3ia_ 23 CLIMCLAEPGK-----NDVAVDVGCGTGGVTLELAGR-VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALC 96 (186)
T ss_dssp HHHHHHHCCCT-----TCEEEEESCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHT
T ss_pred HHHHHhcCCCC-----CCEEEEEECCeEccccccccc-ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhccc
Confidence 44556666654 999999999999999999886 679999999999999999999999998899999999988766
Q ss_pred CCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 223 PDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 223 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+...||+|++....+ +...+++.+.+.|||||++++..
T Consensus 97 ~~~~~D~v~~~~~~~---~~~~~~~~~~~~LkpgG~lvi~~ 134 (186)
T d1l3ia_ 97 KIPDIDIAVVGGSGG---ELQEILRIIKDKLKPGGRIIVTA 134 (186)
T ss_dssp TSCCEEEEEESCCTT---CHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccCCcCEEEEeCccc---cchHHHHHHHHHhCcCCEEEEEe
Confidence 678999999887554 45778999999999999998865
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=1e-18 Score=152.30 Aligned_cols=103 Identities=20% Similarity=0.158 Sum_probs=88.1
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--CCCCCccceEE-----
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--PFPDGQFDLVW----- 231 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD~v~----- 231 (371)
+.+|||||||+|..+..+++..+.+|+|||+|+.+++.|+++....+ .++.++..|+... ++++++||.|+
T Consensus 54 g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~~ 131 (229)
T d1zx0a1 54 GGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLPDGHFDGILYDTYP 131 (229)
T ss_dssp CEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGSCTTCEEEEEECCCC
T ss_pred CCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcc--cccccccccccccccccccccccceeecccc
Confidence 78999999999999999998655789999999999999999987655 4678888876543 46778898887
Q ss_pred ccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 232 SMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 232 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+...++|+.+...++++++|+|||||.+++.+
T Consensus 132 ~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~~ 163 (229)
T d1zx0a1 132 LSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 163 (229)
T ss_dssp CBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred cccccccccCHHHHHHHHHHHcCCCcEEEEEe
Confidence 56788888899999999999999999998744
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.71 E-value=2.5e-17 Score=144.65 Aligned_cols=124 Identities=19% Similarity=0.287 Sum_probs=102.3
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
++.+|||+|||+|.+++.+++. +++|+|+|+|+.+++.|+++++.+++ ++++.++|+.+ .++.++||+|+++...+
T Consensus 120 ~g~~VLDiGcGsG~l~i~aa~~-g~~V~gvDis~~av~~A~~na~~n~~--~~~~~~~d~~~-~~~~~~fD~V~ani~~~ 195 (254)
T d2nxca1 120 PGDKVLDLGTGSGVLAIAAEKL-GGKALGVDIDPMVLPQAEANAKRNGV--RPRFLEGSLEA-ALPFGPFDLLVANLYAE 195 (254)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCGGGHHHHHHHHHHTTC--CCEEEESCHHH-HGGGCCEEEEEEECCHH
T ss_pred ccCEEEEcccchhHHHHHHHhc-CCEEEEEECChHHHHHHHHHHHHcCC--ceeEEeccccc-cccccccchhhhccccc
Confidence 4899999999999999988765 88999999999999999999999987 46788998765 34578999999874433
Q ss_pred CcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEEE
Q 017428 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAE 317 (371)
Q Consensus 238 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~ 317 (371)
....+++++.++|||||++++..+.. ...+++.+.++++||..++..
T Consensus 196 ---~l~~l~~~~~~~LkpGG~lilSgil~------------------------------~~~~~v~~~~~~~Gf~~~~~~ 242 (254)
T d2nxca1 196 ---LHAALAPRYREALVPGGRALLTGILK------------------------------DRAPLVREAMAGAGFRPLEEA 242 (254)
T ss_dssp ---HHHHHHHHHHHHEEEEEEEEEEEEEG------------------------------GGHHHHHHHHHHTTCEEEEEE
T ss_pred ---cHHHHHHHHHHhcCCCcEEEEEecch------------------------------hhHHHHHHHHHHCCCEEEEEE
Confidence 35678899999999999999975311 135678889999999988765
Q ss_pred e
Q 017428 318 D 318 (371)
Q Consensus 318 ~ 318 (371)
.
T Consensus 243 ~ 243 (254)
T d2nxca1 243 A 243 (254)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.70 E-value=3.5e-17 Score=143.92 Aligned_cols=114 Identities=15% Similarity=0.205 Sum_probs=100.9
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHc--CCCCCeEEEEcC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAAR--GLADKVSFQVGD 216 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~--~~~~~v~~~~~d 216 (371)
-+..++..+.+++ +.+|||+|||+|.++..|++.. ..+|+++|+++++++.|+++++.. +...++.+.++|
T Consensus 84 D~s~Ii~~l~i~P-----G~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d 158 (264)
T d1i9ga_ 84 DAAQIVHEGDIFP-----GARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSD 158 (264)
T ss_dssp HHHHHHHHTTCCT-----TCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSC
T ss_pred HHHHHHHHhCCCC-----CCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecc
Confidence 3466777888876 9999999999999999999987 469999999999999999998764 455799999999
Q ss_pred CCCCCCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 217 ALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 217 ~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
+.+.++++++||+|++ +++++..++.++.++|||||++++...
T Consensus 159 ~~~~~~~~~~fDaV~l-----dlp~P~~~l~~~~~~LkpGG~lv~~~P 201 (264)
T d1i9ga_ 159 LADSELPDGSVDRAVL-----DMLAPWEVLDAVSRLLVAGGVLMVYVA 201 (264)
T ss_dssp GGGCCCCTTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred cccccccCCCcceEEE-----ecCCHHHHHHHHHhccCCCCEEEEEeC
Confidence 9988888999999975 679999999999999999999998763
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.70 E-value=3.6e-17 Score=142.91 Aligned_cols=110 Identities=16% Similarity=0.205 Sum_probs=92.8
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 017428 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (371)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (371)
..++.++.+++ +.+|||+|||+|.++..+++.. +.+|+++|.++++++.|+++++..+...++++...|+.+.
T Consensus 75 ~~Ii~~l~i~p-----G~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~ 149 (250)
T d1yb2a1 75 SYIIMRCGLRP-----GMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF 149 (250)
T ss_dssp ------CCCCT-----TCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC
T ss_pred HHHHHHcCCCC-----cCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc
Confidence 44566777775 9999999999999999999876 4699999999999999999999877678999999999875
Q ss_pred CCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 221 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
++++.||+|++ +++++..++.++.++|||||++++..
T Consensus 150 -~~~~~fD~V~l-----d~p~p~~~l~~~~~~LKpGG~lv~~~ 186 (250)
T d1yb2a1 150 -ISDQMYDAVIA-----DIPDPWNHVQKIASMMKPGSVATFYL 186 (250)
T ss_dssp -CCSCCEEEEEE-----CCSCGGGSHHHHHHTEEEEEEEEEEE
T ss_pred -cccceeeeeee-----cCCchHHHHHHHHHhcCCCceEEEEe
Confidence 46789999986 46788899999999999999999865
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.69 E-value=1.1e-16 Score=135.47 Aligned_cols=112 Identities=14% Similarity=0.194 Sum_probs=95.8
Q ss_pred HHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCC-CeEEEEcCCCCCCCC
Q 017428 145 TLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLAD-KVSFQVGDALQQPFP 223 (371)
Q Consensus 145 ~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~-~v~~~~~d~~~~~~~ 223 (371)
+++.+...+ +.+|||+|||+|.++..+++. +.+|+++|+|+.+++.|+++++.+++.. ++++..+|+.+ +++
T Consensus 44 Li~~l~~~~-----~~~VLDiGcG~G~~~~~la~~-~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~-~~~ 116 (194)
T d1dusa_ 44 LVENVVVDK-----DDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVK 116 (194)
T ss_dssp HHHHCCCCT-----TCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCT
T ss_pred HHHhCCcCC-----CCeEEEEeecCChhHHHHHhh-ccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhh-hhc
Confidence 455555544 899999999999999999886 6799999999999999999999888753 68999999877 556
Q ss_pred CCccceEEccccccCcCCH-HHHHHHHHHhcCCCcEEEEEe
Q 017428 224 DGQFDLVWSMESGEHMPDK-SKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 224 ~~~fD~v~~~~~l~~~~~~-~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+++||+|+++..+++..+. ..+++++.++|+|||.+++..
T Consensus 117 ~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 157 (194)
T d1dusa_ 117 DRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVI 157 (194)
T ss_dssp TSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEEE
Confidence 7899999999888776553 789999999999999998754
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.69 E-value=1e-16 Score=137.57 Aligned_cols=112 Identities=14% Similarity=0.272 Sum_probs=97.6
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC
Q 017428 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA 217 (371)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~ 217 (371)
.++..+++.+.+++ +.+|||||||+|..+..+++.. ...|+++|+++.+++.|+++++..++ .|+.++.+|.
T Consensus 62 ~~~a~~l~~l~l~~-----g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~-~n~~~~~~d~ 135 (213)
T d1dl5a1 62 SLMALFMEWVGLDK-----GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI-ENVIFVCGDG 135 (213)
T ss_dssp HHHHHHHHHTTCCT-----TCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEESCG
T ss_pred hhhHHHHHhhhccc-----cceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcc-cccccccCch
Confidence 35677788888876 9999999999999999999877 46899999999999999999999887 5899999998
Q ss_pred CCCCCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 218 LQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 218 ~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
.+....+++||+|++..+++++++ ++.+.|||||+|++..
T Consensus 136 ~~~~~~~~~fD~I~~~~~~~~~p~------~l~~~LkpGG~lv~pv 175 (213)
T d1dl5a1 136 YYGVPEFSPYDVIFVTVGVDEVPE------TWFTQLKEGGRVIVPI 175 (213)
T ss_dssp GGCCGGGCCEEEEEECSBBSCCCH------HHHHHEEEEEEEEEEB
T ss_pred HHccccccchhhhhhhccHHHhHH------HHHHhcCCCcEEEEEE
Confidence 887666788999999999998864 4678899999998854
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.69 E-value=1.1e-16 Score=136.75 Aligned_cols=107 Identities=13% Similarity=0.060 Sum_probs=88.5
Q ss_pred CCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEE-c
Q 017428 155 PTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVW-S 232 (371)
Q Consensus 155 ~~~~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~-~ 232 (371)
+..|+.+|||+|||+|..+..+++.. ..+|+|+|+|+.|++.++++++..+ |+.++..|+...+.....+|.+. +
T Consensus 53 ~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~---ni~~i~~d~~~~~~~~~~~~~vd~v 129 (209)
T d1nt2a_ 53 KLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN---NIIPLLFDASKPWKYSGIVEKVDLI 129 (209)
T ss_dssp CCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCS---SEEEECSCTTCGGGTTTTCCCEEEE
T ss_pred CCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccC---CceEEEeeccCccccccccceEEEE
Confidence 34569999999999999999999987 4689999999999999999988754 89999999988654444444443 2
Q ss_pred cccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 233 MESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 233 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
...+.|..+...++++++++|||||.+++...
T Consensus 130 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 161 (209)
T d1nt2a_ 130 YQDIAQKNQIEILKANAEFFLKEKGEVVIMVK 161 (209)
T ss_dssp EECCCSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EecccChhhHHHHHHHHHHHhccCCeEEEEEE
Confidence 34566777888999999999999999999874
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.68 E-value=1.2e-16 Score=141.30 Aligned_cols=137 Identities=20% Similarity=0.251 Sum_probs=113.6
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (371)
-...++.++.+.+ +.+|||+|||+|.++..+++.. +++|+++|+++++++.|+++++..++..++.+...|+.
T Consensus 91 d~~~Ii~~l~i~p-----G~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~ 165 (266)
T d1o54a_ 91 DSSFIAMMLDVKE-----GDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDIS 165 (266)
T ss_dssp HHHHHHHHTTCCT-----TCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGG
T ss_pred HHHHHHHhhCCCC-----CCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecccc
Confidence 3456778888876 9999999999999999999976 47999999999999999999999998889999999875
Q ss_pred CCCCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCC
Q 017428 219 QQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCS 298 (371)
Q Consensus 219 ~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (371)
. .+....||.|+. +++++..+++++.++|||||.|++...+. . .
T Consensus 166 ~-~~~~~~~D~V~~-----d~p~p~~~l~~~~~~LKpGG~lv~~~P~~---------------~---------------Q 209 (266)
T d1o54a_ 166 E-GFDEKDVDALFL-----DVPDPWNYIDKCWEALKGGGRFATVCPTT---------------N---------------Q 209 (266)
T ss_dssp G-CCSCCSEEEEEE-----CCSCGGGTHHHHHHHEEEEEEEEEEESSH---------------H---------------H
T ss_pred c-cccccceeeeEe-----cCCCHHHHHHHHHhhcCCCCEEEEEeCcc---------------c---------------H
Confidence 4 345677998864 67899999999999999999999876321 0 1
Q ss_pred HHHHHHHHHhCCCceEEEEe
Q 017428 299 TADYVKLLQSLSLEDIKAED 318 (371)
Q Consensus 299 ~~~~~~ll~~aGF~~v~~~~ 318 (371)
.++..+.|++.||..+++.+
T Consensus 210 v~~~~~~l~~~gF~~i~~~E 229 (266)
T d1o54a_ 210 VQETLKKLQELPFIRIEVWE 229 (266)
T ss_dssp HHHHHHHHHHSSEEEEEEEC
T ss_pred HHHHHHHHHHCCceeEEEEE
Confidence 34566788899998887654
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.63 E-value=9.8e-16 Score=130.05 Aligned_cols=104 Identities=22% Similarity=0.187 Sum_probs=92.4
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCccceEEcccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWSMES 235 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~v~~~~~ 235 (371)
.-.|||||||+|.++..+|+.+ +..++|+|+++.++..|.++++..++ .|+.++.+|+..+. ++++++|.|++.+.
T Consensus 30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l-~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp 108 (204)
T d2fcaa1 30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEA-QNVKLLNIDADTLTDVFEPGEVKRVYLNFS 108 (204)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCC-SSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhc-cCchhcccchhhhhcccCchhhhccccccc
Confidence 3479999999999999999998 78999999999999999999999998 58999999998764 77899999998887
Q ss_pred ccCcCCH--------HHHHHHHHHhcCCCcEEEEEe
Q 017428 236 GEHMPDK--------SKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 236 l~~~~~~--------~~~l~~~~~~LkpgG~l~i~~ 263 (371)
..+.... ..+++++.++|||||.|.+.+
T Consensus 109 ~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 109 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred cccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 7765433 479999999999999999975
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.60 E-value=1.3e-14 Score=126.45 Aligned_cols=158 Identities=18% Similarity=0.204 Sum_probs=111.9
Q ss_pred HHHHHHHHcC-CCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 017428 141 MIEETLRFAG-VSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (371)
Q Consensus 141 ~~~~~l~~~~-~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (371)
....+++... .. ...+|||||||+|.++..+++++ +.+++..|+ |..++ .....++++++.+|+.
T Consensus 68 ~~~~l~~~~~~f~-----~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~-------~~~~~~ri~~~~gd~~ 134 (244)
T d1fp1d2 68 EMKRMLEIYTGFE-----GISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIE-------NAPPLSGIEHVGGDMF 134 (244)
T ss_dssp HHHHHHHHCCTTT-----TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHT-------TCCCCTTEEEEECCTT
T ss_pred HHHHHHHhccccc-----CCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhh-------ccCCCCCeEEecCCcc
Confidence 3445555554 23 36899999999999999999999 789999998 43333 2344578999999987
Q ss_pred CCCCCCCccceEEccccccCcCCH--HHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHH--HhhccCCC
Q 017428 219 QQPFPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKK--ICDAYYLP 294 (371)
Q Consensus 219 ~~~~~~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 294 (371)
+. .| ..|+|++.+++|+++|. ..+|+++++.|+|||.|+|.+...+........ ......+.. .....+
T Consensus 135 ~~-~p--~~D~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~--~~~~~~~d~~m~~~~~g-- 207 (244)
T d1fp1d2 135 AS-VP--QGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEE--SKLVSTLDNLMFITVGG-- 207 (244)
T ss_dssp TC-CC--CEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHH--HHHHHHHHHHHHHHHSC--
T ss_pred cc-cc--cceEEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchH--HHHHHHHHHHHHhhCCC--
Confidence 63 34 35999999999999764 688999999999999999999764432211110 000011110 111112
Q ss_pred CCCCHHHHHHHHHhCCCceEEEEe
Q 017428 295 AWCSTADYVKLLQSLSLEDIKAED 318 (371)
Q Consensus 295 ~~~~~~~~~~ll~~aGF~~v~~~~ 318 (371)
.-.|.++|.++|++|||+.+++..
T Consensus 208 ~ert~~e~~~ll~~AGF~~v~v~~ 231 (244)
T d1fp1d2 208 RERTEKQYEKLSKLSGFSKFQVAC 231 (244)
T ss_dssp CCEEHHHHHHHHHHTTCSEEEEEE
T ss_pred cCCCHHHHHHHHHHcCCCceEEEe
Confidence 135899999999999999998754
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=3.1e-15 Score=128.96 Aligned_cols=112 Identities=19% Similarity=0.247 Sum_probs=93.6
Q ss_pred HHHHHHHHc--CCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCC----CCeEE
Q 017428 141 MIEETLRFA--GVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLA----DKVSF 212 (371)
Q Consensus 141 ~~~~~l~~~--~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~----~~v~~ 212 (371)
+...+++.+ .++ ++.+|||||||+|..+..+++.. ..+|+++|+++++++.|+++++..++. .++.+
T Consensus 62 ~~a~~le~L~~~l~-----~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~ 136 (224)
T d1i1na_ 62 MHAYALELLFDQLH-----EGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQL 136 (224)
T ss_dssp HHHHHHHHTTTTSC-----TTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEE
T ss_pred HHHHHHHHHhhccC-----CCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEE
Confidence 456666666 334 48999999999999999999875 469999999999999999998876542 47899
Q ss_pred EEcCCCCCCCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 213 QVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 213 ~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
..+|......+.++||+|++..++.++++ .+.+.|||||+|++..
T Consensus 137 ~~gD~~~~~~~~~~fD~I~~~~~~~~ip~------~l~~~LkpGG~LV~pv 181 (224)
T d1i1na_ 137 VVGDGRMGYAEEAPYDAIHVGAAAPVVPQ------ALIDQLKPGGRLILPV 181 (224)
T ss_dssp EESCGGGCCGGGCCEEEEEECSBBSSCCH------HHHHTEEEEEEEEEEE
T ss_pred EEeecccccchhhhhhhhhhhcchhhcCH------HHHhhcCCCcEEEEEE
Confidence 99999887767789999999999988764 5788999999999864
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.60 E-value=2.6e-15 Score=135.19 Aligned_cols=105 Identities=25% Similarity=0.304 Sum_probs=83.1
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCC---CCeEEEEcCCCCCC---CCCCccceEEc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLA---DKVSFQVGDALQQP---FPDGQFDLVWS 232 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~~---~~~~~fD~v~~ 232 (371)
+.+|||+|||+|..+..+++. +.+|+|+|+|+.|++.|+++....+.. ....+...++...+ ...++||+|++
T Consensus 57 ~~~vLD~GcG~G~~~~~la~~-g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~v~~ 135 (292)
T d1xvaa_ 57 CHRVLDVACGTGVDSIMLVEE-GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVIC 135 (292)
T ss_dssp CCEEEESSCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEEE
T ss_pred CCEEEEecCCCcHHHHHHHHc-CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCceEEEE
Confidence 679999999999999999987 789999999999999999988776532 12345555554321 13578999987
Q ss_pred c-ccccCcCC-------HHHHHHHHHHhcCCCcEEEEEec
Q 017428 233 M-ESGEHMPD-------KSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 233 ~-~~l~~~~~-------~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
. .+++|+++ ...++++++++|||||.|++...
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 175 (292)
T d1xvaa_ 136 LGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 175 (292)
T ss_dssp CSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeec
Confidence 5 58888854 46799999999999999998653
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=1.4e-15 Score=138.96 Aligned_cols=119 Identities=14% Similarity=0.237 Sum_probs=97.6
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHc-------CC-CCC
Q 017428 139 VRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAAR-------GL-ADK 209 (371)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~-------~~-~~~ 209 (371)
...+.++++.+.+++ +.+|||||||+|.++..++..++ .+++|||+|+.+++.|++..+.. |. +.+
T Consensus 137 ~~~~~~~~~~~~l~~-----~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~ 211 (328)
T d1nw3a_ 137 FDLVAQMIDEIKMTD-----DDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAE 211 (328)
T ss_dssp HHHHHHHHHHSCCCT-----TCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHcCCCC-----CCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCc
Confidence 346778888888876 89999999999999999998875 47999999999999998876542 22 357
Q ss_pred eEEEEcCCCCCCCCCCcc--ceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 210 VSFQVGDALQQPFPDGQF--DLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 210 v~~~~~d~~~~~~~~~~f--D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+.|+++|+.+.++.+..+ |+|++ +.+.|.++....+.++.+.|||||++++..
T Consensus 212 i~~~~gd~~~~~~~~~~~~advi~~-~~~~f~~~~~~~l~e~~r~LKpGg~iv~~~ 266 (328)
T d1nw3a_ 212 YTLERGDFLSEEWRERIANTSVIFV-NNFAFGPEVDHQLKERFANMKEGGRIVSSK 266 (328)
T ss_dssp EEEEECCTTSHHHHHHHHHCSEEEE-CCTTTCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred eEEEECcccccccccccCcceEEEE-cceecchHHHHHHHHHHHhCCCCcEEEEec
Confidence 999999999887665555 45554 556677888899999999999999998865
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=7e-15 Score=133.10 Aligned_cols=112 Identities=18% Similarity=0.196 Sum_probs=92.8
Q ss_pred HHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHc----------CCCCC
Q 017428 142 IEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAAR----------GLADK 209 (371)
Q Consensus 142 ~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~----------~~~~~ 209 (371)
+..++.++.+.+ +.+|||+|||+|.++..|++.. ..+|+++|+++++++.|+++++.. +.+.|
T Consensus 87 ~~~Il~~l~i~p-----G~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~n 161 (324)
T d2b25a1 87 INMILSMMDINP-----GDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDN 161 (324)
T ss_dssp HHHHHHHHTCCT-----TCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCC
T ss_pred HHHHHHHhCCCC-----CCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccc
Confidence 456677788876 9999999999999999999987 469999999999999999998864 44678
Q ss_pred eEEEEcCCCCCC--CCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 210 VSFQVGDALQQP--FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 210 v~~~~~d~~~~~--~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+.+...|+.+.. +++..||.|++ .++++..++.++.++|||||+|++..
T Consensus 162 v~~~~~di~~~~~~~~~~~fD~V~L-----D~p~P~~~l~~~~~~LKpGG~lv~~~ 212 (324)
T d2b25a1 162 VDFIHKDISGATEDIKSLTFDAVAL-----DMLNPHVTLPVFYPHLKHGGVCAVYV 212 (324)
T ss_dssp EEEEESCTTCCC-------EEEEEE-----CSSSTTTTHHHHGGGEEEEEEEEEEE
T ss_pred eeEEecchhhcccccCCCCcceEee-----cCcCHHHHHHHHHHhccCCCEEEEEe
Confidence 999999998753 45678999985 45777889999999999999999865
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.57 E-value=2.3e-14 Score=121.44 Aligned_cols=104 Identities=21% Similarity=0.249 Sum_probs=89.9
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCccceEEcccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWSMES 235 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~v~~~~~ 235 (371)
.-.|||||||+|.++..+|+.+ ...++|+|+++.++..|.+++...++ .|+.+..+|+.++. ++++++|.|++...
T Consensus 32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l-~Ni~~~~~da~~l~~~~~~~~~~~i~i~fP 110 (204)
T d1yzha1 32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV-PNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 110 (204)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-SSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhcc-ccceeeecCHHHHhhhccCCceehhccccc
Confidence 3479999999999999999998 78999999999999999999999998 58999999998864 67899999987665
Q ss_pred ccCcCCH--------HHHHHHHHHhcCCCcEEEEEe
Q 017428 236 GEHMPDK--------SKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 236 l~~~~~~--------~~~l~~~~~~LkpgG~l~i~~ 263 (371)
-.+.... ..+++.+.++|||||.|.+.+
T Consensus 111 dPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T 146 (204)
T d1yzha1 111 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 146 (204)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred ccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 4433221 589999999999999999865
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.56 E-value=5.1e-14 Score=121.14 Aligned_cols=108 Identities=17% Similarity=0.195 Sum_probs=87.9
Q ss_pred CCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC---CCCCCc
Q 017428 152 SEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ---PFPDGQ 226 (371)
Q Consensus 152 ~~~~~~~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~~~ 226 (371)
...+..|+.+|||+|||+|..+..+++.. ...|+|+|+|+.+++.++++++.. +++..+..|.... +.....
T Consensus 67 ~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~---~~~~~i~~d~~~~~~~~~~~~~ 143 (227)
T d1g8aa_ 67 KNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER---RNIVPILGDATKPEEYRALVPK 143 (227)
T ss_dssp CCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC---TTEEEEECCTTCGGGGTTTCCC
T ss_pred cccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhc---CCceEEEEECCCcccccccccc
Confidence 33445669999999999999999999987 469999999999999999987654 4688888888654 233467
Q ss_pred cceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 227 FDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 227 fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
+|+|++ .+.+..+...+++++++.|||||.++++..
T Consensus 144 vD~i~~--d~~~~~~~~~~l~~~~~~LkpgG~lvi~~k 179 (227)
T d1g8aa_ 144 VDVIFE--DVAQPTQAKILIDNAEVYLKRGGYGMIAVK 179 (227)
T ss_dssp EEEEEE--CCCSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eEEEEE--EccccchHHHHHHHHHHhcccCCeEEEEEE
Confidence 888765 455656778899999999999999999764
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.56 E-value=6e-14 Score=123.78 Aligned_cols=138 Identities=15% Similarity=0.227 Sum_probs=107.4
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 017428 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (371)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (371)
.+++..+..... .+.+|||+|||+|..++.++... ..+|+++|+|+.+++.|+++++..++ .+++|+++|+.
T Consensus 96 ~lv~~~l~~~~~------~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~-~~v~~~~~d~~ 168 (274)
T d2b3ta1 96 CLVEQALARLPE------QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI-KNIHILQSDWF 168 (274)
T ss_dssp HHHHHHHHHSCS------SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTC-CSEEEECCSTT
T ss_pred hhhhhHhhhhcc------cccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCc-ccceeeecccc
Confidence 345555554432 36899999999999999999988 78999999999999999999999998 57999999987
Q ss_pred CCCCCCCccceEEcccccc-------------CcC------------CHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCc
Q 017428 219 QQPFPDGQFDLVWSMESGE-------------HMP------------DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSE 273 (371)
Q Consensus 219 ~~~~~~~~fD~v~~~~~l~-------------~~~------------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~ 273 (371)
+ ++++++||+|+++--.. |-+ ...+++.++.++|+|||.+++.. .
T Consensus 169 ~-~~~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEi-g-------- 238 (274)
T d2b3ta1 169 S-ALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH-G-------- 238 (274)
T ss_dssp G-GGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC-C--------
T ss_pred c-ccCCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEE-C--------
Confidence 6 45567999999963221 111 12468899999999999999842 1
Q ss_pred cccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEE
Q 017428 274 ESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKA 316 (371)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~ 316 (371)
....+.+.+++++.||..+++
T Consensus 239 ----------------------~~q~~~v~~~l~~~gf~~i~~ 259 (274)
T d2b3ta1 239 ----------------------WQQGEAVRQAFILAGYHDVET 259 (274)
T ss_dssp ----------------------SSCHHHHHHHHHHTTCTTCCE
T ss_pred ----------------------chHHHHHHHHHHHCCCCeEEE
Confidence 113567889999999986654
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.55 E-value=1.5e-14 Score=124.01 Aligned_cols=108 Identities=15% Similarity=0.156 Sum_probs=90.0
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (371)
+...++..+.+++ +.+|||||||+|..+..+++. ..+|+++|+++.+++.|++++... .|+.++.+|....
T Consensus 58 ~~a~ml~~L~l~~-----g~~VLdIG~GsGy~ta~La~l-~~~V~aiE~~~~~~~~A~~~~~~~---~nv~~~~~d~~~g 128 (224)
T d1vbfa_ 58 LGIFMLDELDLHK-----GQKVLEIGTGIGYYTALIAEI-VDKVVSVEINEKMYNYASKLLSYY---NNIKLILGDGTLG 128 (224)
T ss_dssp HHHHHHHHTTCCT-----TCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHTTC---SSEEEEESCGGGC
T ss_pred hHHHHHHHhhhcc-----cceEEEecCCCCHHHHHHHHH-hcccccccccHHHHHHHHHHHhcc---cccccccCchhhc
Confidence 4455777777775 999999999999999988886 679999999999999999887643 5899999998765
Q ss_pred CCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 221 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
....++||+|++..++.++++ .+.+.|||||+|++..
T Consensus 129 ~~~~~pfD~Iiv~~a~~~ip~------~l~~qLk~GGrLV~pv 165 (224)
T d1vbfa_ 129 YEEEKPYDRVVVWATAPTLLC------KPYEQLKEGGIMILPI 165 (224)
T ss_dssp CGGGCCEEEEEESSBBSSCCH------HHHHTEEEEEEEEEEE
T ss_pred chhhhhHHHHHhhcchhhhhH------HHHHhcCCCCEEEEEE
Confidence 445688999999998888764 4667899999998853
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.54 E-value=1.9e-14 Score=122.65 Aligned_cols=111 Identities=20% Similarity=0.311 Sum_probs=96.5
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (371)
+...++..+.+++ +.+|||||||+|..+..++...+.+|+++|.++.+++.|+++++..++ .|+.++.+|....
T Consensus 66 ~~a~ml~~L~l~~-----g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~-~nv~~~~gd~~~g 139 (215)
T d1jg1a_ 66 MVAIMLEIANLKP-----GMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGV-KNVHVILGDGSKG 139 (215)
T ss_dssp HHHHHHHHHTCCT-----TCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTC-CSEEEEESCGGGC
T ss_pred hHHHHHHhhccCc-----cceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCC-ceeEEEECccccC
Confidence 5567777787776 899999999999999999887677899999999999999999999998 5899999999876
Q ss_pred CCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 221 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
....++||+|++..++.++++ .+.+.|+|||+|++..
T Consensus 140 ~~~~~pfD~Iiv~~a~~~ip~------~l~~qL~~gGrLv~pv 176 (215)
T d1jg1a_ 140 FPPKAPYDVIIVTAGAPKIPE------PLIEQLKIGGKLIIPV 176 (215)
T ss_dssp CGGGCCEEEEEECSBBSSCCH------HHHHTEEEEEEEEEEE
T ss_pred CcccCcceeEEeecccccCCH------HHHHhcCCCCEEEEEE
Confidence 556789999999999988765 3567899999999854
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.54 E-value=4.2e-14 Score=129.26 Aligned_cols=101 Identities=25% Similarity=0.331 Sum_probs=88.7
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 238 (371)
+.+|||||||+|.++..+++....+|+++|.|+ ++..|++..+.++...++.++.+|+.++++++++||+|++..+.++
T Consensus 39 ~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~~ 117 (328)
T d1g6q1_ 39 DKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYF 117 (328)
T ss_dssp TCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBTT
T ss_pred cCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEeccee
Confidence 789999999999999988886335899999997 6788999999999989999999999999988899999998665554
Q ss_pred c---CCHHHHHHHHHHhcCCCcEEE
Q 017428 239 M---PDKSKFVSELARVTAPAGTII 260 (371)
Q Consensus 239 ~---~~~~~~l~~~~~~LkpgG~l~ 260 (371)
+ .....++..+.++|||||.++
T Consensus 118 ~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 118 LLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp BSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred eccchhHHHHHHHHHhccCCCeEEE
Confidence 4 457889999999999999886
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.53 E-value=2.7e-13 Score=118.23 Aligned_cols=160 Identities=18% Similarity=0.148 Sum_probs=110.5
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (371)
....++....... ...+|||||||+|.+++.+++++ +.+++++|+.+. ++. ....+++++..+|+.+
T Consensus 68 ~~~~~~~~~~~~~----~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i~~-------~~~~~r~~~~~~d~~~ 135 (243)
T d1kyza2 68 TMKKILETYTGFE----GLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-IED-------APSYPGVEHVGGDMFV 135 (243)
T ss_dssp HHHHHHHHCCTTS----SCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-TTT-------CCCCTTEEEEECCTTT
T ss_pred HHHHHHHhccccc----CCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-hhh-------cccCCceEEecccccc
Confidence 3444555544322 35789999999999999999999 789999999653 222 3345789999999876
Q ss_pred CCCCCCccceEEccccccCcCC--HHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHH---hhccCCC
Q 017428 220 QPFPDGQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKI---CDAYYLP 294 (371)
Q Consensus 220 ~~~~~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 294 (371)
+.|. .|++++.+++|.+++ ...+|+++++.|+|||+++|.+...+...... ........+.-. ....+
T Consensus 136 -~~P~--ad~~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~~~~~~~~~~--~~~~~~~~~d~~ml~~~~~g-- 208 (243)
T d1kyza2 136 -SIPK--ADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSS--LATKGVVHIDVIMLAHNPGG-- 208 (243)
T ss_dssp -CCCC--CSCEECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEECEECSSCCCC--HHHHHHHHHHHHHHHHCSSC--
T ss_pred -cCCC--cceEEEEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEEEEecCCCCCc--hhhHHHHHHHHHHHhhCCCC--
Confidence 3443 577888999999865 47899999999999999999986543322111 111111111111 11111
Q ss_pred CCCCHHHHHHHHHhCCCceEEEEec
Q 017428 295 AWCSTADYVKLLQSLSLEDIKAEDW 319 (371)
Q Consensus 295 ~~~~~~~~~~ll~~aGF~~v~~~~~ 319 (371)
.-.+.++|+++|++|||+++++...
T Consensus 209 ~ert~~e~~~ll~~AGf~~vkv~~~ 233 (243)
T d1kyza2 209 KERTQKEFEDLAKGAGFQGFKVHCN 233 (243)
T ss_dssp CCEEHHHHHHHHHHHCCSCEEEEEE
T ss_pred CcCCHHHHHHHHHHcCCCcEEEEEe
Confidence 1258999999999999999987643
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.53 E-value=6.2e-14 Score=122.23 Aligned_cols=148 Identities=16% Similarity=0.230 Sum_probs=107.1
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
..+|||||||+|.++..+++++ +.++++.|+ |..++. .+..++++++.+|+.+.. + .+|++++.++||
T Consensus 81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~-------~~~~~rv~~~~gD~f~~~-p--~aD~~~l~~vLH 149 (244)
T d1fp2a2 81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVEN-------LSGSNNLTYVGGDMFTSI-P--NADAVLLKYILH 149 (244)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTT-------CCCBTTEEEEECCTTTCC-C--CCSEEEEESCGG
T ss_pred ceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHh-------CcccCceEEEecCcccCC-C--CCcEEEEEeecc
Confidence 5789999999999999999999 789999999 434332 345679999999998742 3 579999999999
Q ss_pred CcCCH--HHHHHHHHHhcCCC---cEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCc
Q 017428 238 HMPDK--SKFVSELARVTAPA---GTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLE 312 (371)
Q Consensus 238 ~~~~~--~~~l~~~~~~Lkpg---G~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~ 312 (371)
+++|. .++|+++++.|+|| |+++|.+...+....... . ......+.-..-... ..-.|.++|.++|+++||+
T Consensus 150 dw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~-~-~~~~~~~dl~m~~~~-G~ert~~e~~~ll~~AGf~ 226 (244)
T d1fp2a2 150 NWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQ-V-TQIKLLMDVNMACLN-GKERNEEEWKKLFIEAGFQ 226 (244)
T ss_dssp GSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHH-H-HHHHHHHHHHGGGGT-CCCEEHHHHHHHHHHTTCC
T ss_pred cCChHHHHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCch-H-HHHHHHHHHHHHhCC-CcCCCHHHHHHHHHHcCCc
Confidence 99876 58999999999999 889998865443221111 0 001111111111111 1246899999999999999
Q ss_pred eEEEEecC
Q 017428 313 DIKAEDWS 320 (371)
Q Consensus 313 ~v~~~~~~ 320 (371)
++++....
T Consensus 227 ~~~i~~~~ 234 (244)
T d1fp2a2 227 HYKISPLT 234 (244)
T ss_dssp EEEEEEEE
T ss_pred eEEEEECC
Confidence 99876543
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.52 E-value=3.3e-14 Score=129.19 Aligned_cols=102 Identities=25% Similarity=0.280 Sum_probs=88.2
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 238 (371)
+.+|||||||+|.++..+++....+|+|+|.|+. ...+++.++.+++.+++.++.+|+.+++++.++||+|++..+.++
T Consensus 34 ~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~~ 112 (316)
T d1oria_ 34 DKVVLDVGSGTGILCMFAAKAGARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYC 112 (316)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBBT
T ss_pred cCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeeeee
Confidence 7899999999999999888863357999999975 577778888888988999999999999988899999998766655
Q ss_pred c---CCHHHHHHHHHHhcCCCcEEEE
Q 017428 239 M---PDKSKFVSELARVTAPAGTIII 261 (371)
Q Consensus 239 ~---~~~~~~l~~~~~~LkpgG~l~i 261 (371)
+ ...+.++..+.++|||||.++-
T Consensus 113 l~~e~~~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 113 LFYESMLNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp BTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred eccHHHHHHHHHHHHhcCCCCeEEEe
Confidence 5 3578999999999999999874
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=1.6e-13 Score=124.39 Aligned_cols=103 Identities=24% Similarity=0.292 Sum_probs=86.2
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
++.+|||||||+|.++..+++....+|+++|.|+.+.. +++....++..+++.++.+|+.+++++.++||+|++....+
T Consensus 35 ~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~-a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~~~ 113 (311)
T d2fyta1 35 KDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQ-AMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGY 113 (311)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHH-HHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCBT
T ss_pred CcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHH-HHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeeeee
Confidence 37899999999999999998873358999999998764 66667777777899999999999988889999999876666
Q ss_pred CcC---CHHHHHHHHHHhcCCCcEEEE
Q 017428 238 HMP---DKSKFVSELARVTAPAGTIII 261 (371)
Q Consensus 238 ~~~---~~~~~l~~~~~~LkpgG~l~i 261 (371)
++. ....++....++|||||.++-
T Consensus 114 ~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 114 FLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp TBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred ecccccccHHHHHHHHhcCCCCcEEec
Confidence 553 356788888899999999874
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.45 E-value=4.5e-13 Score=117.64 Aligned_cols=128 Identities=16% Similarity=0.069 Sum_probs=102.4
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
++.+|||+|||+|.+++.+++...++|+++|+++.+++.++++++.+++.++++++++|+.+.. +.+.||.|++...
T Consensus 107 ~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~-~~~~~D~Ii~~~p-- 183 (260)
T d2frna1 107 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP-GENIADRILMGYV-- 183 (260)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC-CCSCEEEEEECCC--
T ss_pred CccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhc-cCCCCCEEEECCC--
Confidence 4899999999999999999987457999999999999999999999999888999999998875 3578999987532
Q ss_pred CcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceE
Q 017428 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDI 314 (371)
Q Consensus 238 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v 314 (371)
+....++..+.++|+|||+|.+.++...... .-...+.+.++.+..||.+.
T Consensus 184 --~~~~~~l~~a~~~l~~gG~lh~~~~~~~~~~------------------------~~~~~e~~~~~~~~~g~~v~ 234 (260)
T d2frna1 184 --VRTHEFIPKALSIAKDGAIIHYHNTVPEKLM------------------------PREPFETFKRITKEYGYDVE 234 (260)
T ss_dssp --SSGGGGHHHHHHHEEEEEEEEEEEEEEGGGT------------------------TTTTHHHHHHHHHHTTCEEE
T ss_pred --CchHHHHHHHHhhcCCCCEEEEEeccccccc------------------------hhhHHHHHHHHHHHcCCceE
Confidence 2335678889999999999987664322110 01235667788889999764
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.43 E-value=1.7e-13 Score=127.07 Aligned_cols=119 Identities=14% Similarity=0.126 Sum_probs=90.8
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcC-------C-CCC
Q 017428 139 VRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARG-------L-ADK 209 (371)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~-------~-~~~ 209 (371)
..++.++++.+.+++ +.+|||||||+|..+..++..++ ++|+|||+|+.|++.|+++.+..+ . ...
T Consensus 202 ~~~i~~Il~~l~Lkp-----gd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~ 276 (406)
T d1u2za_ 202 PNFLSDVYQQCQLKK-----GDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNN 276 (406)
T ss_dssp HHHHHHHHHHTTCCT-----TCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCC
T ss_pred HHHHHHHHHHhCCCC-----CCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhcccccc
Confidence 346788889888876 99999999999999999999886 489999999999999999876532 1 123
Q ss_pred eEE-EEcCCCCCCCC---CCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 210 VSF-QVGDALQQPFP---DGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 210 v~~-~~~d~~~~~~~---~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+.+ ..++..+.+.. -..+|+|++.. +.|.++....+.++++.|||||.+++.+
T Consensus 277 ~~~~~~~~f~~~~~~d~~~~~adVV~inn-~~f~~~l~~~L~ei~r~LKPGGrIVs~~ 333 (406)
T d1u2za_ 277 VEFSLKKSFVDNNRVAELIPQCDVILVNN-FLFDEDLNKKVEKILQTAKVGCKIISLK 333 (406)
T ss_dssp EEEEESSCSTTCHHHHHHGGGCSEEEECC-TTCCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred ceeeeeechhhccccccccccceEEEEec-ccCchHHHHHHHHHHHhcCCCcEEEEec
Confidence 333 34444433211 13467777654 5577888999999999999999998865
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.40 E-value=2.4e-13 Score=116.58 Aligned_cols=111 Identities=18% Similarity=0.266 Sum_probs=89.5
Q ss_pred HHHHHHHHc--CCCCCCCCCCCEEEEECCCcChHHHHHHHHcC-------CEEEEEeCCHHHHHHHHHHHHHc-----CC
Q 017428 141 MIEETLRFA--GVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG-------AKCQGITLSPVQAQRANALAAAR-----GL 206 (371)
Q Consensus 141 ~~~~~l~~~--~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~-------~~v~gvD~s~~~~~~a~~~~~~~-----~~ 206 (371)
+...+++.+ .++ ++.+|||||||+|..+..+++..+ .+|+++|.++++++.|++++... ++
T Consensus 66 ~~a~~l~~L~~~l~-----~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~ 140 (223)
T d1r18a_ 66 MHAFALEYLRDHLK-----PGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDS 140 (223)
T ss_dssp HHHHHHHHTTTTCC-----TTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhccC-----CCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCc
Confidence 445666665 444 489999999999999998887652 48999999999999998876543 23
Q ss_pred CCCeEEEEcCCCCCCCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 207 ADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 207 ~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
.|+.+..+|..+...+.++||+|++..++.++++ .+.+.|||||++++..
T Consensus 141 -~nv~~~~~d~~~~~~~~~~fD~Iiv~~a~~~~p~------~l~~~Lk~gG~lV~pv 190 (223)
T d1r18a_ 141 -GQLLIVEGDGRKGYPPNAPYNAIHVGAAAPDTPT------ELINQLASGGRLIVPV 190 (223)
T ss_dssp -TSEEEEESCGGGCCGGGCSEEEEEECSCBSSCCH------HHHHTEEEEEEEEEEE
T ss_pred -cEEEEEecccccccccccceeeEEEEeechhchH------HHHHhcCCCcEEEEEE
Confidence 4899999998876556789999999999988764 4678999999998854
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.34 E-value=1.3e-12 Score=109.12 Aligned_cols=117 Identities=19% Similarity=0.300 Sum_probs=97.2
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (371)
++++++..+...+ +..|||++||+|..+..+++.+ +++|+|+|.++.|++.|+++++..+ .++.++.+++.+
T Consensus 11 ll~evi~~l~~~~-----~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~--~r~~~~~~~f~~ 83 (192)
T d1m6ya2 11 MVREVIEFLKPED-----EKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYRE 83 (192)
T ss_dssp THHHHHHHHCCCT-----TCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGG
T ss_pred HHHHHHHhhCCCC-----CCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcccc--ccccchhHHHhh
Confidence 5667777776654 8999999999999999999987 7899999999999999999987754 689999999877
Q ss_pred CC-----CCCCccceEEcccccc---------CcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 220 QP-----FPDGQFDLVWSMESGE---------HMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 220 ~~-----~~~~~fD~v~~~~~l~---------~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
+. +..++||.|+....+. .+......+..+.++|+|||.+++..+
T Consensus 84 ~~~~~~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f 142 (192)
T d1m6ya2 84 ADFLLKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISF 142 (192)
T ss_dssp HHHHHHHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEES
T ss_pred HHHHHHHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeecc
Confidence 42 4468899998765552 233456889999999999999999875
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.30 E-value=1.9e-12 Score=117.60 Aligned_cols=108 Identities=20% Similarity=0.182 Sum_probs=88.0
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC----CCCCCccceEEcc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ----PFPDGQFDLVWSM 233 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~fD~v~~~ 233 (371)
++.+|||+|||+|.+++.++.....+|+++|+|+.+++.|+++++.+|+.++++++++|+.+. +....+||+|++.
T Consensus 145 ~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi~D 224 (324)
T d2as0a2 145 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLD 224 (324)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchhcC
Confidence 389999999999999999987633489999999999999999999999988999999998653 2345789999975
Q ss_pred ccccCc---------CCHHHHHHHHHHhcCCCcEEEEEecc
Q 017428 234 ESGEHM---------PDKSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 234 ~~l~~~---------~~~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
--.... .+..+++..+.++|+|||+|+++..+
T Consensus 225 pP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s 265 (324)
T d2as0a2 225 PPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS 265 (324)
T ss_dssp CCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred CccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 322211 12356888899999999999998743
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=1.6e-10 Score=100.60 Aligned_cols=81 Identities=11% Similarity=0.024 Sum_probs=68.7
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC------CCCCccceE
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP------FPDGQFDLV 230 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------~~~~~fD~v 230 (371)
+..+|||+|||+|..+..++.+. +.+++|+|+|+.+++.|+++++.+++..++.+...+....- ..+++||+|
T Consensus 61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i 140 (250)
T d2h00a1 61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 140 (250)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEE
Confidence 45799999999999999999887 89999999999999999999999999999998887654421 235689999
Q ss_pred EccccccC
Q 017428 231 WSMESGEH 238 (371)
Q Consensus 231 ~~~~~l~~ 238 (371)
+|+--++.
T Consensus 141 vsNPPY~~ 148 (250)
T d2h00a1 141 MCNPPFFA 148 (250)
T ss_dssp EECCCCC-
T ss_pred EecCcccc
Confidence 99876654
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.28 E-value=1.2e-12 Score=118.58 Aligned_cols=105 Identities=18% Similarity=0.114 Sum_probs=86.0
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC----CCCCCccceEEccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ----PFPDGQFDLVWSME 234 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~fD~v~~~~ 234 (371)
+.+|||++||+|.+++.++.. +.+|+++|+|+.+++.|+++++.+|+ .+++++.+|+.+. ....++||+|++.-
T Consensus 146 g~rVLDl~~gtG~~s~~~a~g-~~~V~~vD~s~~al~~a~~n~~~ngl-~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~Dp 223 (318)
T d1wxxa2 146 GERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGL-GNVRVLEANAFDLLRRLEKEGERFDLVVLDP 223 (318)
T ss_dssp EEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTC-TTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeeeccCCCCcHHHHHHHhc-CCcEEeecchHHHHHHHHHHHHHcCC-CCcceeeccHHHHhhhhHhhhcCCCEEEEcC
Confidence 789999999999999998864 67999999999999999999999998 5899999998663 23457899999753
Q ss_pred cccCc---------CCHHHHHHHHHHhcCCCcEEEEEecc
Q 017428 235 SGEHM---------PDKSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 235 ~l~~~---------~~~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
-.... .+...++..+.++|+|||.|+++..+
T Consensus 224 P~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs 263 (318)
T d1wxxa2 224 PAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS 263 (318)
T ss_dssp CCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 22111 22356888999999999999987643
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.26 E-value=4e-12 Score=102.49 Aligned_cols=105 Identities=13% Similarity=0.067 Sum_probs=83.5
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-CCCCCccceEEccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-PFPDGQFDLVWSMESG 236 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~v~~~~~l 236 (371)
.+.+|||+|||+|.+++..+.+...+|+++|.++.+++.++++++..++.++++++.+|+... ....++||+|++.--.
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPPy 93 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPPY 93 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCSS
T ss_pred CCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechhh
Confidence 388999999999999998887733589999999999999999999999888899999998763 3456889999885321
Q ss_pred cCcCCHHHHHHHHH--HhcCCCcEEEEEe
Q 017428 237 EHMPDKSKFVSELA--RVTAPAGTIIIVT 263 (371)
Q Consensus 237 ~~~~~~~~~l~~~~--~~LkpgG~l~i~~ 263 (371)
........+..+. ++|+|||.+++..
T Consensus 94 -~~~~~~~~l~~i~~~~~L~~~g~iiiE~ 121 (152)
T d2esra1 94 -AKETIVATIEALAAKNLLSEQVMVVCET 121 (152)
T ss_dssp -HHHHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred -ccchHHHHHHHHHHCCCcCCCeEEEEEe
Confidence 1122345566554 5799999988754
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=3.1e-11 Score=102.84 Aligned_cols=116 Identities=16% Similarity=0.229 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc
Q 017428 138 QVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVG 215 (371)
Q Consensus 138 ~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~ 215 (371)
+-+++..++.... +.+|||||||+|..+..+++.. +.+|+.+|.++...+.|++.++..|+.++++++.+
T Consensus 47 ~g~lL~~L~~~~~--------~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~G 118 (219)
T d2avda1 47 QAQLLANLARLIQ--------AKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLK 118 (219)
T ss_dssp HHHHHHHHHHHTT--------CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEES
T ss_pred HHHHHHHHHHccC--------CCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEe
Confidence 4456666665543 7899999999999999999876 57999999999999999999999999999999999
Q ss_pred CCCCC-C-----CCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 216 DALQQ-P-----FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 216 d~~~~-~-----~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
|+.+. + ...++||+|+...- -.+....++.+.++|+|||.+++-+.
T Consensus 119 da~e~l~~~~~~~~~~~fD~ifiD~d---k~~y~~~~~~~~~lL~~GGvii~Dn~ 170 (219)
T d2avda1 119 PALETLDELLAAGEAGTFDVAVVDAD---KENCSAYYERCLQLLRPGGILAVLRV 170 (219)
T ss_dssp CHHHHHHHHHHTTCTTCEEEEEECSC---STTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred ehhhcchhhhhhcccCCccEEEEeCC---HHHHHHHHHHHHHHhcCCcEEEEeCC
Confidence 97553 1 23578999998632 24567788999999999999999664
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.23 E-value=1.1e-11 Score=105.46 Aligned_cols=119 Identities=18% Similarity=0.269 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEE
Q 017428 136 AAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQ 213 (371)
Q Consensus 136 ~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~ 213 (371)
..+-+++..++.... +.+|||+|||+|..++.+++.+ +.+|+++|.++.+.+.|+++++..|+.++++++
T Consensus 42 ~~~G~lL~~lv~~~k--------pk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~ 113 (214)
T d2cl5a1 42 DAKGQIMDAVIREYS--------PSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTIL 113 (214)
T ss_dssp HHHHHHHHHHHHHHC--------CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEE
T ss_pred HHHHHHHHHHHHhhC--------CCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceee
Confidence 445567777777653 7899999999999999999876 579999999999999999999999998899999
Q ss_pred EcCCCCC-C-----CCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 214 VGDALQQ-P-----FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 214 ~~d~~~~-~-----~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
.+|..+. + +..++||+|++.+.-.. ......+.+..++|||||++++-+
T Consensus 114 ~Gd~~e~l~~l~~~~~~~~~D~ifiD~~~~~-~~~~~~l~~~~~lLkpGGvIv~Dd 168 (214)
T d2cl5a1 114 NGASQDLIPQLKKKYDVDTLDMVFLDHWKDR-YLPDTLLLEKCGLLRKGTVLLADN 168 (214)
T ss_dssp ESCHHHHGGGHHHHSCCCCEEEEEECSCGGG-HHHHHHHHHHTTCEEEEEEEEESC
T ss_pred eccccccccchhhcccccccceeeecccccc-cccHHHHHHHhCccCCCcEEEEeC
Confidence 9998663 2 33578999987632111 112234677788999999876633
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.20 E-value=2.9e-11 Score=107.68 Aligned_cols=107 Identities=16% Similarity=0.167 Sum_probs=84.4
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCC-CeEEEEcCCCCC----CCCCCccceEEc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLAD-KVSFQVGDALQQ----PFPDGQFDLVWS 232 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~-~v~~~~~d~~~~----~~~~~~fD~v~~ 232 (371)
++.+|||++||+|.+++.++.. +++|++||.|+.+++.|+++++.+++.+ +++|+++|+.+. ......||+|++
T Consensus 132 ~~~rVLdlf~~tG~~sl~aa~~-GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~Iil 210 (309)
T d2igta1 132 RPLKVLNLFGYTGVASLVAAAA-GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILT 210 (309)
T ss_dssp SCCEEEEETCTTCHHHHHHHHT-TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEE
T ss_pred CCCeEEEecCCCcHHHHHHHhC-CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEEE
Confidence 3789999999999999998875 8899999999999999999999988864 699999998764 123578999997
Q ss_pred cc---c------ccCc-CCHHHHHHHHHHhcCCCcEEEEEecc
Q 017428 233 ME---S------GEHM-PDKSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 233 ~~---~------l~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
.- . ...+ .+...+++.+.++|+|||.+++...+
T Consensus 211 DPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~ 253 (309)
T d2igta1 211 DPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY 253 (309)
T ss_dssp CCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred CCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecC
Confidence 31 1 1111 22356777888999999987776643
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.15 E-value=3.7e-11 Score=108.24 Aligned_cols=107 Identities=16% Similarity=0.038 Sum_probs=85.5
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEEEcCCCCC----CCCCCccceEEc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLA-DKVSFQVGDALQQ----PFPDGQFDLVWS 232 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~----~~~~~~fD~v~~ 232 (371)
++.+|||+.||+|.+++.++......|++||+|+.+++.++++++.+++. .+++++.+|+.+. ....++||+|++
T Consensus 144 ~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii~ 223 (317)
T d2b78a2 144 AGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIII 223 (317)
T ss_dssp BTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEEEE
Confidence 38899999999999999887752347999999999999999999999885 5799999998653 123578999997
Q ss_pred ccc--------c-cCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 233 MES--------G-EHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 233 ~~~--------l-~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
.-- + ....+..++++.+.++|+|||.|+++..
T Consensus 224 DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~sc 264 (317)
T d2b78a2 224 DPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN 264 (317)
T ss_dssp CCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred cChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 421 1 1112456789999999999999999764
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.11 E-value=2.5e-10 Score=97.53 Aligned_cols=116 Identities=16% Similarity=0.224 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc
Q 017428 138 QVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVG 215 (371)
Q Consensus 138 ~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~ 215 (371)
+-+++..++.... +.+|||||+++|..+..+++.. +++|+.+|.++...+.|++.++..|+.++++++.+
T Consensus 47 ~g~~L~~L~~~~~--------~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g 118 (227)
T d1susa1 47 EGQFLSMLLKLIN--------AKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREG 118 (227)
T ss_dssp HHHHHHHHHHHHT--------CCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEES
T ss_pred HHHHHHHHHHhcC--------CCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeeh
Confidence 3445666665543 7899999999999999999877 57999999999999999999999999889999999
Q ss_pred CCCCC-C------CCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 216 DALQQ-P------FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 216 d~~~~-~------~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
|+.+. + ...++||+|+.-.- -......++.+.++|+|||.+++-+.
T Consensus 119 ~a~~~L~~l~~~~~~~~~fD~iFiDa~---k~~y~~~~e~~~~ll~~gGiii~DNv 171 (227)
T d1susa1 119 PALPVLDEMIKDEKNHGSYDFIFVDAD---KDNYLNYHKRLIDLVKVGGVIGYDNT 171 (227)
T ss_dssp CHHHHHHHHHHCGGGTTCBSEEEECSC---STTHHHHHHHHHHHBCTTCCEEEETT
T ss_pred HHHHHHHHHHhccccCCceeEEEeccc---hhhhHHHHHHHHhhcCCCcEEEEccC
Confidence 98653 1 12468999998632 24567889999999999999999654
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.11 E-value=6.7e-11 Score=97.02 Aligned_cols=103 Identities=16% Similarity=0.181 Sum_probs=74.3
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC--CCCCCCccceEEcccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ--QPFPDGQFDLVWSMES 235 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~fD~v~~~~~ 235 (371)
++.+|||+|||+|.+++.++.+ +++++++|.++.+++.++++++..++..++....+|... .....++||+|++.--
T Consensus 41 ~g~~vLDl~~G~G~~~i~a~~~-ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~DPP 119 (171)
T d1ws6a1 41 RRGRFLDPFAGSGAVGLEAASE-GWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPP 119 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHT-TCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CCCeEEEeccccchhhhhhhhc-cchhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEEccc
Confidence 3789999999999999988876 889999999999999999999999886544443333211 1234578999998532
Q ss_pred ccCcCCHHHHHHHH--HHhcCCCcEEEEEe
Q 017428 236 GEHMPDKSKFVSEL--ARVTAPAGTIIIVT 263 (371)
Q Consensus 236 l~~~~~~~~~l~~~--~~~LkpgG~l~i~~ 263 (371)
+. . +....+..+ ..+|+|||.+++..
T Consensus 120 Y~-~-~~~~~l~~l~~~~ll~~~g~ivie~ 147 (171)
T d1ws6a1 120 YA-M-DLAALFGELLASGLVEAGGLYVLQH 147 (171)
T ss_dssp TT-S-CTTHHHHHHHHHTCEEEEEEEEEEE
T ss_pred cc-c-CHHHHHHHHHHcCCcCCCeEEEEEe
Confidence 22 2 222333333 35799999888754
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.11 E-value=1.8e-10 Score=96.30 Aligned_cols=105 Identities=14% Similarity=0.139 Sum_probs=76.2
Q ss_pred CCCEEEEECCCcChH----HHHHHHHc-----CCEEEEEeCCHHHHHHHHHHH--------------H----HcCC----
Q 017428 158 RPKNVVDVGCGIGGS----SRYLAKKF-----GAKCQGITLSPVQAQRANALA--------------A----ARGL---- 206 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~----~~~l~~~~-----~~~v~gvD~s~~~~~~a~~~~--------------~----~~~~---- 206 (371)
++.+|+++|||||.- ++.+.+.. ..+|+|+|+|+..++.|++-. . ..+.
T Consensus 24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~ 103 (193)
T d1af7a2 24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 103 (193)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccc
Confidence 368999999999994 44444432 137999999999999987321 1 0000
Q ss_pred --------CCCeEEEEcCCCCCC-CCCCccceEEccccccCcCCH--HHHHHHHHHhcCCCcEEEEE
Q 017428 207 --------ADKVSFQVGDALQQP-FPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIV 262 (371)
Q Consensus 207 --------~~~v~~~~~d~~~~~-~~~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~ 262 (371)
-..+.+...+..... .+.+.||+|+|.++|.+++.. .++++++++.|+|||+|++.
T Consensus 104 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG 170 (193)
T d1af7a2 104 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 170 (193)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred eeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 012455666655432 345889999999999999765 78999999999999999885
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=99.08 E-value=9.2e-10 Score=96.31 Aligned_cols=75 Identities=23% Similarity=0.229 Sum_probs=65.4
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-CCCCccceEEcc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-FPDGQFDLVWSM 233 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~v~~~ 233 (371)
..+|||+|||+|..+..+++...++|+++|+|+.+++.|+++++..++..++.+..+|+.+.. ...++||+|+++
T Consensus 111 ~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsN 186 (271)
T d1nv8a_ 111 IKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSN 186 (271)
T ss_dssp CCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEEC
T ss_pred ccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEc
Confidence 568999999999999998865478999999999999999999999999888999999987642 234789999986
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.05 E-value=3.7e-10 Score=94.10 Aligned_cols=69 Identities=19% Similarity=0.169 Sum_probs=58.6
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l 236 (371)
+.+|||+|||+|.+++.++.....+|+|+|+++.+++.|++++ .++.++.+|+.+++ ++||+|+++--+
T Consensus 49 Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~------~~~~~~~~D~~~l~---~~fD~Vi~NPPf 117 (197)
T d1ne2a_ 49 GRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNC------GGVNFMVADVSEIS---GKYDTWIMNPPF 117 (197)
T ss_dssp TSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHC------TTSEEEECCGGGCC---CCEEEEEECCCC
T ss_pred CCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHcc------ccccEEEEehhhcC---CcceEEEeCccc
Confidence 7899999999999998877753457999999999999998864 47899999998764 789999987443
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.98 E-value=1.5e-09 Score=91.19 Aligned_cols=74 Identities=16% Similarity=0.034 Sum_probs=63.0
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
+.+|||+|||+|.+++.++......|+|+|+++.+++.++++++..+. +..+...|+..+ +++||+|+++--..
T Consensus 47 g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~--~~~~~~~d~~~~---~~~fD~Vi~nPP~~ 120 (201)
T d1wy7a1 47 GKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGDVSEF---NSRVDIVIMNPPFG 120 (201)
T ss_dssp TCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESCGGGC---CCCCSEEEECCCCS
T ss_pred CCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCC--CceEEECchhhh---CCcCcEEEEcCccc
Confidence 789999999999999988776335899999999999999999888774 688999998775 47799999876543
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=98.94 E-value=1.4e-09 Score=89.91 Aligned_cols=105 Identities=16% Similarity=0.035 Sum_probs=84.0
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC----CCCCCccceEEcc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ----PFPDGQFDLVWSM 233 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~fD~v~~~ 233 (371)
.+.+|||++||+|.+++..+.+....|++||.++.+++.++++++..+...+++++..|+.+. .-...+||+|++.
T Consensus 41 ~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIflD 120 (182)
T d2fhpa1 41 DGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLD 120 (182)
T ss_dssp SSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEEec
Confidence 389999999999999999998743479999999999999999999888877899999998653 1234679999875
Q ss_pred ccccCcCCHHHHHHHHHH--hcCCCcEEEEEe
Q 017428 234 ESGEHMPDKSKFVSELAR--VTAPAGTIIIVT 263 (371)
Q Consensus 234 ~~l~~~~~~~~~l~~~~~--~LkpgG~l~i~~ 263 (371)
--. ...+....+..+.. +|+|+|++++..
T Consensus 121 PPY-~~~~~~~~l~~i~~~~~L~~~giIi~E~ 151 (182)
T d2fhpa1 121 PPY-AKQEIVSQLEKMLERQLLTNEAVIVCET 151 (182)
T ss_dssp CCG-GGCCHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred hhh-hhhHHHHHHHHHHHCCCCCCCEEEEEEc
Confidence 432 23455677777754 699999887643
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.94 E-value=3.4e-09 Score=87.58 Aligned_cols=103 Identities=12% Similarity=0.033 Sum_probs=82.7
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-CCCCCccceEEcccccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-PFPDGQFDLVWSMESGE 237 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~v~~~~~l~ 237 (371)
+.+|||++||+|.+++..+.+...+|+.||.++..++.++++++..+. .++.++..|+.+. .....+||+|++.--..
T Consensus 44 ~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~-~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY~ 122 (183)
T d2fpoa1 44 DAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA-GNARVVNSNAMSFLAQKGTPHNIVFVDPPFR 122 (183)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCHHHHHSSCCCCEEEEEECCSSS
T ss_pred hhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccc-cceeeeeecccccccccccccCEEEEcCccc
Confidence 789999999999999998887445899999999999999999988776 5789999997653 33467899999864432
Q ss_pred CcCCHHHHHHHHHH--hcCCCcEEEEEe
Q 017428 238 HMPDKSKFVSELAR--VTAPAGTIIIVT 263 (371)
Q Consensus 238 ~~~~~~~~l~~~~~--~LkpgG~l~i~~ 263 (371)
......++..+.+ +|+++|.+++..
T Consensus 123 -~~~~~~~l~~l~~~~~L~~~~iIiiE~ 149 (183)
T d2fpoa1 123 -RGLLEETINLLEDNGWLADEALIYVES 149 (183)
T ss_dssp -TTTHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred -cchHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 2345667777665 699999988854
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.92 E-value=1.4e-08 Score=85.12 Aligned_cols=99 Identities=16% Similarity=0.126 Sum_probs=87.6
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
+.+|+|+|||.|..++.++-.+ ..+++.+|.+..-+...+......++ .|++++...+++.. ...+||+|+++.
T Consensus 66 ~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L-~nv~v~~~R~E~~~-~~~~fD~V~sRA--- 140 (207)
T d1jsxa_ 66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKL-ENIEPVQSRVEEFP-SEPPFDGVISRA--- 140 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC-SSEEEEECCTTTSC-CCSCEEEEECSC---
T ss_pred CCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCC-cceeeeccchhhhc-cccccceehhhh---
Confidence 5799999999999999999876 68999999999999999999999998 58999999999875 356899999874
Q ss_pred CcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 238 HMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 238 ~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+.....++.-+...+++||.+++.-
T Consensus 141 -~~~~~~ll~~~~~~l~~~g~~~~~K 165 (207)
T d1jsxa_ 141 -FASLNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp -SSSHHHHHHHHTTSEEEEEEEEEEE
T ss_pred -hcCHHHHHHHHHHhcCCCcEEEEEC
Confidence 4678889999999999999999864
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.80 E-value=9.6e-09 Score=88.04 Aligned_cols=90 Identities=17% Similarity=0.233 Sum_probs=70.9
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (371)
.++.+++.+.+.+ +.+|||||||+|.++..+++. +.+|++||+++.+++..+++.... +|+.++.+|+.+.
T Consensus 9 i~~~iv~~~~~~~-----~d~VlEIGpG~G~LT~~Ll~~-~~~v~avE~D~~l~~~l~~~~~~~---~n~~i~~~D~l~~ 79 (235)
T d1qama_ 9 NIDKIMTNIRLNE-----HDNIFEIGSGKGHFTLELVQR-CNFVTAIEIDHKLCKTTENKLVDH---DNFQVLNKDILQF 79 (235)
T ss_dssp HHHHHHTTCCCCT-----TCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHTTTC---CSEEEECCCGGGC
T ss_pred HHHHHHHhcCCCC-----CCeEEEECCCchHHHHHHHhC-cCceEEEeeccchHHHHHHHhhcc---cchhhhhhhhhhc
Confidence 5677777776655 899999999999999999987 789999999999999998876432 5899999999998
Q ss_pred CCCCCccceEEccccccCcC
Q 017428 221 PFPDGQFDLVWSMESGEHMP 240 (371)
Q Consensus 221 ~~~~~~fD~v~~~~~l~~~~ 240 (371)
+++......|++ +.-+++.
T Consensus 80 ~~~~~~~~~vv~-NLPYnIs 98 (235)
T d1qama_ 80 KFPKNQSYKIFG-NIPYNIS 98 (235)
T ss_dssp CCCSSCCCEEEE-ECCGGGH
T ss_pred cccccccceeee-eehhhhh
Confidence 766544344443 3444443
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=98.74 E-value=3.7e-07 Score=83.23 Aligned_cols=118 Identities=19% Similarity=0.330 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEE
Q 017428 134 HRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQ 213 (371)
Q Consensus 134 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~ 213 (371)
-......+++.+++.+...+ +.+|||+-||+|.++..|++. ..+|+|+|.++.+++.|+++++.+++ .|+.|+
T Consensus 193 N~~~~e~l~~~v~~~~~~~~-----~~~vlDLycG~G~fsl~La~~-~~~V~gvE~~~~ai~~A~~na~~n~i-~n~~~~ 265 (358)
T d1uwva2 193 NAGVNQKMVARALEWLDVQP-----EDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGL-QNVTFY 265 (358)
T ss_dssp BHHHHHHHHHHHHHHHTCCT-----TCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEE
T ss_pred chhhhhHHHHHHHHhhccCC-----CceEEEecccccccchhcccc-ccEEEeccCcHHHHHHHHHhHHhccc-ccceee
Confidence 34556667777888776654 789999999999999999987 67999999999999999999999998 589999
Q ss_pred EcCCCCCC----CCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEE
Q 017428 214 VGDALQQP----FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262 (371)
Q Consensus 214 ~~d~~~~~----~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 262 (371)
.+|..+.- .....||+|+..=-=... ..+++.+.+ ++|.-.++|+
T Consensus 266 ~~~~~~~~~~~~~~~~~~d~vilDPPR~G~---~~~~~~l~~-~~~~~ivYVS 314 (358)
T d1uwva2 266 HENLEEDVTKQPWAKNGFDKVLLDPARAGA---AGVMQQIIK-LEPIRIVYVS 314 (358)
T ss_dssp ECCTTSCCSSSGGGTTCCSEEEECCCTTCC---HHHHHHHHH-HCCSEEEEEE
T ss_pred ecchhhhhhhhhhhhccCceEEeCCCCccH---HHHHHHHHH-cCCCEEEEEe
Confidence 99987641 234679998874211111 345666665 3676666664
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.67 E-value=8.8e-09 Score=90.58 Aligned_cols=104 Identities=16% Similarity=0.246 Sum_probs=79.9
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc---------CCCCCeEEEEcCCCCCCCCCCccce
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR---------GLADKVSFQVGDALQQPFPDGQFDL 229 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~---------~~~~~v~~~~~d~~~~~~~~~~fD~ 229 (371)
+.+||-||+|.|..+..+++....+|+.||+++.+++.|++.+... ...++++++.+|+...--.+++||+
T Consensus 73 p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~yDv 152 (276)
T d1mjfa_ 73 PKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGFDV 152 (276)
T ss_dssp CCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCEEE
T ss_pred CceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCCCCE
Confidence 7899999999999999987744568999999999999999865321 2347899999998654223578999
Q ss_pred EEccccccCcCC-----HHHHHHHHHHhcCCCcEEEEEe
Q 017428 230 VWSMESGEHMPD-----KSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 230 v~~~~~l~~~~~-----~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
|++-.. ..... -..+++.+++.|+|||++++..
T Consensus 153 Ii~D~~-~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~ 190 (276)
T d1mjfa_ 153 IIADST-DPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 190 (276)
T ss_dssp EEEECC-CCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEeCC-CCCCCcccccCHHHHHhhHhhcCCCceEEEec
Confidence 986432 22211 1579999999999999998764
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.67 E-value=1.2e-07 Score=85.43 Aligned_cols=104 Identities=18% Similarity=0.230 Sum_probs=80.6
Q ss_pred CCCEEEEECCCcChHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEE
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF------GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVW 231 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~ 231 (371)
++.+|||.|||+|.++..+.+++ ...++|+|+++.++..|+......+. +..+...|..... +..+||+|+
T Consensus 117 ~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~-~~~~fD~vi 193 (328)
T d2f8la1 117 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ--KMTLLHQDGLANL-LVDPVDVVI 193 (328)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC--CCEEEESCTTSCC-CCCCEEEEE
T ss_pred CCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhh--hhhhhcccccccc-ccccccccc
Confidence 37899999999999999887654 23799999999999999988877764 5667777765543 457899999
Q ss_pred ccccccCcCC------------------HHHHHHHHHHhcCCCcEEEEEec
Q 017428 232 SMESGEHMPD------------------KSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 232 ~~~~l~~~~~------------------~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
++--+..... ...++..+.+.|+|||++.++..
T Consensus 194 ~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p 244 (328)
T d2f8la1 194 SDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP 244 (328)
T ss_dssp EECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEec
Confidence 9755432211 13479999999999999888764
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.63 E-value=5.8e-08 Score=79.55 Aligned_cols=113 Identities=19% Similarity=0.312 Sum_probs=89.1
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (371)
++++++..+...+ +..++|..+|.|+.+..+.+. +.+|+|+|.++.++..+++. ..+++.+++.++.++
T Consensus 6 ll~Evl~~l~~~~-----g~~~vD~T~G~GGhs~~iL~~-~~~viaiD~D~~ai~~a~~~-----~~~~~~~~~~~f~~~ 74 (182)
T d1wg8a2 6 LYQEALDLLAVRP-----GGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAVARAKGL-----HLPGLTVVQGNFRHL 74 (182)
T ss_dssp THHHHHHHHTCCT-----TCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHT-----CCTTEEEEESCGGGH
T ss_pred HHHHHHHhcCCCC-----CCEEEEeCCCCcHHHHHHhcc-cCcEEEEhhhhhHHHHHhhc-----cccceeEeehHHHHH
Confidence 4566777766654 899999999999999999987 67999999999999988764 236899999988775
Q ss_pred C-----CCCCccceEEccccccCc--C-------CHHHHHHHHHHhcCCCcEEEEEec
Q 017428 221 P-----FPDGQFDLVWSMESGEHM--P-------DKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 221 ~-----~~~~~fD~v~~~~~l~~~--~-------~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
. +..+.+|.|++...+... . .....|......|+|||.+++..+
T Consensus 75 ~~~l~~~~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~f 132 (182)
T d1wg8a2 75 KRHLAALGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAF 132 (182)
T ss_dssp HHHHHHTTCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred HHHHHHcCCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEec
Confidence 2 345779999986554332 1 234578889999999999999874
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.60 E-value=1.7e-08 Score=90.18 Aligned_cols=105 Identities=19% Similarity=0.169 Sum_probs=80.7
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHc--C--CCCCeEEEEcCCCCC-CCCCCccceEEc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAAR--G--LADKVSFQVGDALQQ-PFPDGQFDLVWS 232 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~--~--~~~~v~~~~~d~~~~-~~~~~~fD~v~~ 232 (371)
+.+||.||.|.|..+..+++.. ..+|++||+++..++.|++.+... + -.++++++.+|+... .-.+++||+|++
T Consensus 78 pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi~ 157 (312)
T d1uira_ 78 PKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVII 157 (312)
T ss_dssp CCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEEE
T ss_pred cceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEEEE
Confidence 7899999999999999998765 569999999999999999987432 1 236899999998764 223578999995
Q ss_pred ccc--ccC--cC-C--HHHHHHHHHHhcCCCcEEEEEe
Q 017428 233 MES--GEH--MP-D--KSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 233 ~~~--l~~--~~-~--~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
-.. ... .. . -..+++.+++.|+|||.+++..
T Consensus 158 D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~ 195 (312)
T d1uira_ 158 DLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (312)
T ss_dssp ECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred eCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence 432 111 01 1 1579999999999999998754
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.60 E-value=2.6e-09 Score=92.17 Aligned_cols=91 Identities=20% Similarity=0.256 Sum_probs=73.8
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (371)
.++.+++.+.+.+ +.+|||||||+|.++..+++. +.+|++||+++.+++.+++++.. .++++++.+|+.+.
T Consensus 17 ii~kIv~~~~~~~-----~d~VLEIGpG~G~LT~~L~~~-~~~v~aIE~D~~l~~~l~~~~~~---~~n~~ii~~D~l~~ 87 (245)
T d1yuba_ 17 VLNQIIKQLNLKE-----TDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFNLSSEKLKL---NTRVTLIHQDILQF 87 (245)
T ss_dssp THHHHHHHCCCCS-----SEEEEECSCCCSSCSHHHHHH-SSEEEESSSSCSSSSSSSCTTTT---CSEEEECCSCCTTT
T ss_pred HHHHHHHhcCCCC-----CCeEEEECCCccHHHHHHHhh-cCceeEeeecccchhhhhhhhhh---ccchhhhhhhhhcc
Confidence 5677888887765 899999999999999999997 78999999999998888766532 25899999999998
Q ss_pred CCCCCccceEEccccccCcCC
Q 017428 221 PFPDGQFDLVWSMESGEHMPD 241 (371)
Q Consensus 221 ~~~~~~fD~v~~~~~l~~~~~ 241 (371)
+++...++.|+++.- +|+..
T Consensus 88 ~~~~~~~~~vv~NLP-Y~Ist 107 (245)
T d1yuba_ 88 QFPNKQRYKIVGNIP-YHLST 107 (245)
T ss_dssp TCCCSSEEEEEEECC-SSSCH
T ss_pred ccccceeeeEeeeee-hhhhH
Confidence 887777776665544 56654
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.57 E-value=1.2e-07 Score=80.82 Aligned_cols=133 Identities=17% Similarity=0.112 Sum_probs=104.1
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC---CCCccceEEcc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF---PDGQFDLVWSM 233 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~fD~v~~~ 233 (371)
...+|+|||+|.|..++.++-.+ +.+++.+|.+..-+...+......++ .|+.++...+++... ..++||+|+++
T Consensus 70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L-~n~~i~~~R~E~~~~~~~~~~~~D~v~sR 148 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQL-ENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (239)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC-SSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCC-CCcEEEeehhhhccccccccccceEEEEh
Confidence 36799999999999999998766 78999999999999999999999998 589999988876431 23689999998
Q ss_pred ccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCce
Q 017428 234 ESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLED 313 (371)
Q Consensus 234 ~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~ 313 (371)
.+.....++.-+...+++||.+++.--. .. . . ..++.++.+...|+..
T Consensus 149 ----Ava~l~~ll~~~~~~l~~~g~~i~~KG~---------~~---~-~---------------El~~a~~~~~~~~~~~ 196 (239)
T d1xdza_ 149 ----AVARLSVLSELCLPLVKKNGLFVALKAA---------SA---E-E---------------ELNAGKKAITTLGGEL 196 (239)
T ss_dssp ----CCSCHHHHHHHHGGGEEEEEEEEEEECC----------C---H-H---------------HHHHHHHHHHHTTEEE
T ss_pred ----hhhCHHHHHHHHhhhcccCCEEEEECCC---------Ch---H-H---------------HHHHHHHHHHHcCCEE
Confidence 4568888999999999999999886410 00 0 0 1234456778889988
Q ss_pred EEEEecCCcc
Q 017428 314 IKAEDWSQNV 323 (371)
Q Consensus 314 v~~~~~~~~~ 323 (371)
..+..+..+.
T Consensus 197 ~~v~~~~lp~ 206 (239)
T d1xdza_ 197 ENIHSFKLPI 206 (239)
T ss_dssp EEEEEEECTT
T ss_pred EEEEEEeCCC
Confidence 8777766543
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.54 E-value=2.7e-07 Score=78.06 Aligned_cols=108 Identities=17% Similarity=0.266 Sum_probs=79.1
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (371)
+.+.++..+.... +.+|||.|||+|.++..+.+.. ...++|+|+++..+.. .....+..+|..
T Consensus 7 i~~~m~~l~~~~~-----~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~----------~~~~~~~~~~~~ 71 (223)
T d2ih2a1 7 VVDFMVSLAEAPR-----GGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL----------PPWAEGILADFL 71 (223)
T ss_dssp HHHHHHHHCCCCT-----TCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC----------CTTEEEEESCGG
T ss_pred HHHHHHHhcCCCC-----cCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh----------cccceeeeeehh
Confidence 4455566665544 8899999999999998888766 4679999999865432 235677888877
Q ss_pred CCCCCCCccceEEccccccCcC----------------------------C-HHHHHHHHHHhcCCCcEEEEEec
Q 017428 219 QQPFPDGQFDLVWSMESGEHMP----------------------------D-KSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 219 ~~~~~~~~fD~v~~~~~l~~~~----------------------------~-~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
... ....||+|+++-...... + ...++..+.+.|+|||++.++..
T Consensus 72 ~~~-~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p 145 (223)
T d2ih2a1 72 LWE-PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP 145 (223)
T ss_dssp GCC-CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccc-cccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEe
Confidence 654 357899999875543210 1 23567889999999999988864
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.52 E-value=7e-08 Score=85.08 Aligned_cols=105 Identities=15% Similarity=0.143 Sum_probs=80.4
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcC---CCCCeEEEEcCCCCC-CCCCCccceEEcc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARG---LADKVSFQVGDALQQ-PFPDGQFDLVWSM 233 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~-~~~~~~fD~v~~~ 233 (371)
+.+||-||.|.|..+..+++.. ..+|++||+++.+++.+++.+.... -.++++++.+|+... .-.+++||+|++-
T Consensus 90 pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~D 169 (295)
T d1inla_ 90 PKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIID 169 (295)
T ss_dssp CCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEEE
T ss_pred CceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEEEc
Confidence 7899999999999999998865 4689999999999999999765321 136899999998663 2235789999964
Q ss_pred ccccC-cCC----HHHHHHHHHHhcCCCcEEEEEe
Q 017428 234 ESGEH-MPD----KSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 234 ~~l~~-~~~----~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
..-.. .+. -..+++.+++.|+|||.+++..
T Consensus 170 ~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~ 204 (295)
T d1inla_ 170 STDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET 204 (295)
T ss_dssp C----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred CCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEec
Confidence 32211 111 2689999999999999998864
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=98.52 E-value=3.8e-07 Score=74.93 Aligned_cols=104 Identities=16% Similarity=0.113 Sum_probs=79.4
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCC-CeEEEEcCCCC---CCCCCCccceEEccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLAD-KVSFQVGDALQ---QPFPDGQFDLVWSME 234 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~-~v~~~~~d~~~---~~~~~~~fD~v~~~~ 234 (371)
+.+|||+.||||.++++.+.+....|+.||.+...+...+++++..++.. ...+...|..+ ......+||+|++.-
T Consensus 44 ~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlDP 123 (183)
T d2ifta1 44 QSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLDP 123 (183)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEECC
T ss_pred cceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEech
Confidence 78999999999999999998844589999999999999999999887644 46666666433 223356799998754
Q ss_pred cccCcCCHHHHHHHHHH--hcCCCcEEEEEe
Q 017428 235 SGEHMPDKSKFVSELAR--VTAPAGTIIIVT 263 (371)
Q Consensus 235 ~l~~~~~~~~~l~~~~~--~LkpgG~l~i~~ 263 (371)
-.. ......++..+.. +|+++|.+++-.
T Consensus 124 PY~-~~~~~~~l~~l~~~~~L~~~~liiiE~ 153 (183)
T d2ifta1 124 PFH-FNLAEQAISLLCENNWLKPNALIYVET 153 (183)
T ss_dssp CSS-SCHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred hHh-hhhHHHHHHHHHHhCCcCCCcEEEEEe
Confidence 332 2345667777754 799999888854
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.50 E-value=1.2e-07 Score=83.67 Aligned_cols=105 Identities=20% Similarity=0.303 Sum_probs=81.4
Q ss_pred CCEEEEECCCcChHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHc---CCCCCeEEEEcCCCCC--CCCCCccceEEc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAAR---GLADKVSFQVGDALQQ--PFPDGQFDLVWS 232 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~---~~~~~v~~~~~d~~~~--~~~~~~fD~v~~ 232 (371)
+.+||=||.|.|..+..+.+..+ .+|+.||+++..++.+++.+... .-.++++++.+|.... ...+++||+|+.
T Consensus 81 pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvIi~ 160 (290)
T d1xj5a_ 81 PKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVIV 160 (290)
T ss_dssp CCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEEE
T ss_pred CcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEEEE
Confidence 68999999999999999988653 68999999999999999976432 1247899999997653 234568999996
Q ss_pred cccccC-cCC---HHHHHHHHHHhcCCCcEEEEEe
Q 017428 233 MESGEH-MPD---KSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 233 ~~~l~~-~~~---~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
-..-.. .+. -..+++.+++.|+|||.+++..
T Consensus 161 D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~ 195 (290)
T d1xj5a_ 161 DSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA 195 (290)
T ss_dssp CCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred cCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEec
Confidence 432111 111 1679999999999999999975
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.49 E-value=6e-07 Score=80.00 Aligned_cols=107 Identities=16% Similarity=0.209 Sum_probs=85.1
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcc--
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSM-- 233 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~-- 233 (371)
++.+|||+.+|.|.=+..++... ...++++|.++.-+...++++++.++ .++.+...|....+.....||.|++-
T Consensus 116 ~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~-~~i~~~~~d~~~~~~~~~~fD~ILvDaP 194 (313)
T d1ixka_ 116 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV-LNVILFHSSSLHIGELNVEFDKILLDAP 194 (313)
T ss_dssp TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC-CSEEEESSCGGGGGGGCCCEEEEEEECC
T ss_pred ccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHh-hccccccccccccccccccccEEEEccc
Confidence 48999999999999999998876 46899999999999999999999998 57888888877766556889999862
Q ss_pred ----ccccCcCC----------------HHHHHHHHHHhcCCCcEEEEEecc
Q 017428 234 ----ESGEHMPD----------------KSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 234 ----~~l~~~~~----------------~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
.++..-++ ..+++.++.+.|||||.|+.++.+
T Consensus 195 CSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCS 246 (313)
T d1ixka_ 195 CTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCS 246 (313)
T ss_dssp TTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred cccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeecc
Confidence 12211111 136788999999999999988764
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.47 E-value=6.3e-07 Score=73.16 Aligned_cols=108 Identities=21% Similarity=0.287 Sum_probs=79.1
Q ss_pred HHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 017428 142 IEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (371)
Q Consensus 142 ~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (371)
+.++.++..+- .++.+||||||+.|.|+..+.+.. ...++++|+.+. ..+ +++.++.+|+.+
T Consensus 10 L~EI~~k~~l~----k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-----------~~i-~~~~~~~~d~~~ 73 (180)
T d1ej0a_ 10 LDEIQQSDKLF----KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-----------DPI-VGVDFLQGDFRD 73 (180)
T ss_dssp HHHHHHHHCCC----CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-----------CCC-TTEEEEESCTTS
T ss_pred HHHHHHHhCcc----CCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc-----------ccc-CCceEeeccccc
Confidence 34455554432 258999999999999999998876 468999999772 112 589999999977
Q ss_pred CC--------CCCCccceEEccccccCcCCH-----------HHHHHHHHHhcCCCcEEEEEecc
Q 017428 220 QP--------FPDGQFDLVWSMESGEHMPDK-----------SKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 220 ~~--------~~~~~fD~v~~~~~l~~~~~~-----------~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
.. .....||+|++-.+...-.+. ...+.-+.++|++||.+++=.+.
T Consensus 74 ~~~~~~~~~~~~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~ 138 (180)
T d1ej0a_ 74 ELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ 138 (180)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred chhhhhhhhhccCcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEec
Confidence 42 235789999987665443221 35677778999999999997754
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.47 E-value=1.5e-07 Score=82.37 Aligned_cols=105 Identities=19% Similarity=0.240 Sum_probs=81.5
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHc---CCCCCeEEEEcCCCCC-CCCCCccceEEcc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAAR---GLADKVSFQVGDALQQ-PFPDGQFDLVWSM 233 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~---~~~~~v~~~~~d~~~~-~~~~~~fD~v~~~ 233 (371)
+.+||-||.|.|..+..+.+.. ..+|+.+|+++..++.|++.+... --.++++++.+|+... .-.+++||+|+.-
T Consensus 76 p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi~D 155 (274)
T d1iy9a_ 76 PEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMVD 155 (274)
T ss_dssp CCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEES
T ss_pred cceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEEEc
Confidence 6899999999999999998864 469999999999999999986432 1246899999998663 2235789999875
Q ss_pred ccccCc--CC--HHHHHHHHHHhcCCCcEEEEEe
Q 017428 234 ESGEHM--PD--KSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 234 ~~l~~~--~~--~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
..-..- .. -..+++.+++.|+|||.++...
T Consensus 156 ~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~ 189 (274)
T d1iy9a_ 156 STEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (274)
T ss_dssp CSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred CCCCCCcchhhccHHHHHHHHhhcCCCceEEEec
Confidence 321110 11 2589999999999999998764
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.46 E-value=5.1e-07 Score=78.76 Aligned_cols=86 Identities=24% Similarity=0.329 Sum_probs=71.0
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (371)
.++.+++.+.+.+ +..|||||+|+|.++..+++. +.+|++|++++.+++..++.+.......++.++.+|+...
T Consensus 9 i~~kIv~~~~~~~-----~d~VlEIGPG~G~LT~~Ll~~-~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~ 82 (278)
T d1zq9a1 9 IINSIIDKAALRP-----TDVVLEVGPGTGNMTVKLLEK-AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKT 82 (278)
T ss_dssp HHHHHHHHTCCCT-----TCEEEEECCTTSTTHHHHHHH-SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTS
T ss_pred HHHHHHHHhCCCC-----CCEEEEECCCchHHHHHHHhc-CCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhh
Confidence 5667777777654 889999999999999999998 7899999999999999999887765557899999999887
Q ss_pred CCCCCccceEEccc
Q 017428 221 PFPDGQFDLVWSME 234 (371)
Q Consensus 221 ~~~~~~fD~v~~~~ 234 (371)
+++ .++.|+++.
T Consensus 83 ~~~--~~~~vV~NL 94 (278)
T d1zq9a1 83 DLP--FFDTCVANL 94 (278)
T ss_dssp CCC--CCSEEEEEC
T ss_pred hhh--hhhhhhcch
Confidence 654 245666553
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.43 E-value=1.8e-07 Score=82.15 Aligned_cols=105 Identities=18% Similarity=0.235 Sum_probs=80.7
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHc---CCCCCeEEEEcCCCCC-CCCCCccceEEcc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAAR---GLADKVSFQVGDALQQ-PFPDGQFDLVWSM 233 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~---~~~~~v~~~~~d~~~~-~~~~~~fD~v~~~ 233 (371)
+.+||-||.|.|..+..+.+.. ..+|+.+|+++.+++.|++.+... --.++++++.+|+... .-..++||+|++-
T Consensus 79 pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi~D 158 (285)
T d2o07a1 79 PRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITD 158 (285)
T ss_dssp CCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEEE
T ss_pred cCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEEEc
Confidence 7899999999999999998764 579999999999999999986431 1247999999997653 2235789999975
Q ss_pred ccccCcC---C--HHHHHHHHHHhcCCCcEEEEEec
Q 017428 234 ESGEHMP---D--KSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 234 ~~l~~~~---~--~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
.. .... . -..+++.+++.|+|||.+++...
T Consensus 159 ~~-~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~ 193 (285)
T d2o07a1 159 SS-DPMGPAESLFKESYYQLMKTALKEDGVLCCQGE 193 (285)
T ss_dssp CC------------CHHHHHHHHHEEEEEEEEEEEE
T ss_pred CC-CCCCcccccccHHHHHHHHHhcCCCCeEEEecc
Confidence 32 1111 1 14789999999999999988753
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.41 E-value=9e-08 Score=84.76 Aligned_cols=105 Identities=18% Similarity=0.179 Sum_probs=78.6
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcC---CCCCeEEEEcCCCCC-CCCCCccceEEcc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARG---LADKVSFQVGDALQQ-PFPDGQFDLVWSM 233 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~-~~~~~~fD~v~~~ 233 (371)
+.+||-||.|.|..+..+++.. ..+|+.||+++..++.+++.+.... -.++++++.+|+... ....++||+|++-
T Consensus 107 pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII~D 186 (312)
T d2b2ca1 107 PKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIITD 186 (312)
T ss_dssp CCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEEC
T ss_pred CCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEEEc
Confidence 6899999999999999998854 3689999999999999999764321 136899999998663 1235789999975
Q ss_pred ccccCc-C---CHHHHHHHHHHhcCCCcEEEEEe
Q 017428 234 ESGEHM-P---DKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 234 ~~l~~~-~---~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
..-..- + --..+++.+++.|+|||.++...
T Consensus 187 ~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~ 220 (312)
T d2b2ca1 187 SSDPVGPAESLFGQSYYELLRDALKEDGILSSQG 220 (312)
T ss_dssp CC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred CCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEec
Confidence 322111 1 12578999999999999999864
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=98.34 E-value=3.9e-07 Score=77.41 Aligned_cols=107 Identities=14% Similarity=0.185 Sum_probs=72.2
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-----CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-----GAKCQGITLSPVQAQRANALAAARGLADKVSFQVG 215 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~-----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~ 215 (371)
.+.+++..+. +.+|||||++.|..+..++..+ .++|+|+|+.+........ ...++.++++
T Consensus 71 ~~~eli~~~K--------Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~------~~~~I~~i~g 136 (232)
T d2bm8a1 71 VYHDMLWELR--------PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS------DMENITLHQG 136 (232)
T ss_dssp HHHHHHHHHC--------CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG------GCTTEEEEEC
T ss_pred HHHHHHHHhC--------CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhc------cccceeeeec
Confidence 4455665543 7899999999999887776533 4799999998754332211 1268999999
Q ss_pred CCCCCC----CCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 216 DALQQP----FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 216 d~~~~~----~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
|..+.. +....+|+|+.-.. |+......-+ +....|+|||++++-+
T Consensus 137 Ds~~~~~~~~l~~~~~dlIfID~~-H~~~~v~~~~-~~~~lLk~GG~iIveD 186 (232)
T d2bm8a1 137 DCSDLTTFEHLREMAHPLIFIDNA-HANTFNIMKW-AVDHLLEEGDYFIIED 186 (232)
T ss_dssp CSSCSGGGGGGSSSCSSEEEEESS-CSSHHHHHHH-HHHHTCCTTCEEEECS
T ss_pred ccccHHHHHHHHhcCCCEEEEcCC-cchHHHHHHH-HHhcccCcCCEEEEEc
Confidence 986642 33456888876543 4322222223 4568999999999966
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.19 E-value=5.7e-06 Score=72.52 Aligned_cols=107 Identities=15% Similarity=0.162 Sum_probs=81.4
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-CCCCCccceEEcc--
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-PFPDGQFDLVWSM-- 233 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~v~~~-- 233 (371)
++.+|||+.+|.|+=+..+++.. ...|+++|+++.-+...+++++..|+. ++.....|.... ....+.||.|++-
T Consensus 102 ~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~-~~~~~~~~~~~~~~~~~~~fd~IL~DaP 180 (284)
T d1sqga2 102 NGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMK-ATVKQGDGRYPSQWCGEQQFDRILLDAP 180 (284)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCC-CEEEECCTTCTHHHHTTCCEEEEEEECC
T ss_pred ccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhccccc-ceeeeccccccchhcccccccEEEEecc
Confidence 48999999999999999998865 578999999999999999999999974 555555444322 1234779999862
Q ss_pred ----ccccCcCCH----------------HHHHHHHHHhcCCCcEEEEEecc
Q 017428 234 ----ESGEHMPDK----------------SKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 234 ----~~l~~~~~~----------------~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
.++..-++. .+++.++.+.|||||.|+.++.+
T Consensus 181 CSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS 232 (284)
T d1sqga2 181 CSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCS 232 (284)
T ss_dssp CCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESC
T ss_pred ccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeec
Confidence 222222221 36888999999999999998864
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=98.16 E-value=5.3e-06 Score=77.13 Aligned_cols=118 Identities=16% Similarity=0.251 Sum_probs=86.8
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--------------CCEEEEEeCCHHHHHHHHHHHHHcCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--------------GAKCQGITLSPVQAQRANALAAARGL 206 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~--------------~~~v~gvD~s~~~~~~a~~~~~~~~~ 206 (371)
+++.++..+... ++.+|+|.+||+|.+...+.+.. ...+.|+|+++.....|+.+..-.+.
T Consensus 150 Iv~~mv~ll~~~-----~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~ 224 (425)
T d2okca1 150 LIQAMVDCINPQ-----MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGI 224 (425)
T ss_dssp HHHHHHHHHCCC-----TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTC
T ss_pred hhHhhheeccCc-----ccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCC
Confidence 444555555443 37899999999999998887754 12599999999999999988877765
Q ss_pred C-CCeEEEEcCCCCCCCCCCccceEEccccccCc----------------CC-HHHHHHHHHHhcCCCcEEEEEec
Q 017428 207 A-DKVSFQVGDALQQPFPDGQFDLVWSMESGEHM----------------PD-KSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 207 ~-~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~----------------~~-~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
. .+..+...|....+ +...||+|+++--+... .+ ...++..+.+.|++||++.++..
T Consensus 225 ~~~~~~i~~~d~l~~~-~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p 299 (425)
T d2okca1 225 GTDRSPIVCEDSLEKE-PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 299 (425)
T ss_dssp CSSCCSEEECCTTTSC-CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccceeecCchhhhh-cccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEec
Confidence 4 24566777876543 45789999987554221 01 13589999999999999888763
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=98.12 E-value=1.2e-06 Score=75.39 Aligned_cols=72 Identities=15% Similarity=0.187 Sum_probs=60.0
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (371)
.++.+++.+...+ +..|||||||+|.++..|++. +.+|++||+++.+++..+++... .+++.++.+|+.+.
T Consensus 9 ~~~~Iv~~~~~~~-----~d~vlEIGpG~G~LT~~Ll~~-~~~v~aiEiD~~l~~~L~~~~~~---~~~~~ii~~D~l~~ 79 (252)
T d1qyra_ 9 VIDSIVSAINPQK-----GQAMVEIGPGLAALTEPVGER-LDQLTVIELDRDLAARLQTHPFL---GPKLTIYQQDAMTF 79 (252)
T ss_dssp HHHHHHHHHCCCT-----TCCEEEECCTTTTTHHHHHTT-CSCEEEECCCHHHHHHHHTCTTT---GGGEEEECSCGGGC
T ss_pred HHHHHHHhcCCCC-----CCEEEEECCCchHHHHHHHcc-CCceEEEEeccchhHHHHHHhhh---ccchhHHhhhhhhh
Confidence 5667777776654 889999999999999999987 78999999999999988775432 25899999999886
Q ss_pred C
Q 017428 221 P 221 (371)
Q Consensus 221 ~ 221 (371)
+
T Consensus 80 ~ 80 (252)
T d1qyra_ 80 N 80 (252)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.08 E-value=1.5e-05 Score=70.14 Aligned_cols=106 Identities=12% Similarity=0.081 Sum_probs=78.3
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC---CCccceEEc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP---DGQFDLVWS 232 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~fD~v~~ 232 (371)
++.+|||+++|.|.-+..+++.. ...|+++|+++.-+...++++++.|+ .++.+...|...+... .+.||.|++
T Consensus 94 ~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~-~~~~~~~~d~~~~~~~~~~~~~fD~VL~ 172 (293)
T d2b9ea1 94 PGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV-SCCELAEEDFLAVSPSDPRYHEVHYILL 172 (293)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCGGGSCTTCGGGTTEEEEEE
T ss_pred ccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCc-cceeeeehhhhhhcccccccceeeEEee
Confidence 48999999999999999998876 46899999999999999999999998 5799999998765321 267999986
Q ss_pred cc------cccCcCC-----------H-------HHHHHHHHHhcCCCcEEEEEecc
Q 017428 233 ME------SGEHMPD-----------K-------SKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 233 ~~------~l~~~~~-----------~-------~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
.- ++..-++ . ..++..+. .|+|||.|+.++.+
T Consensus 173 DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCS 228 (293)
T d2b9ea1 173 DPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCS 228 (293)
T ss_dssp CCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESC
T ss_pred cCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeecc
Confidence 31 1111010 0 12444444 47999998887754
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.03 E-value=9.6e-06 Score=73.62 Aligned_cols=101 Identities=13% Similarity=0.028 Sum_probs=79.9
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCC--------------CeEEEEcCCCCCC-C
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLAD--------------KVSFQVGDALQQP-F 222 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~--------------~v~~~~~d~~~~~-~ 222 (371)
+.+|||..||+|..++..+... ...|+.+|+|+..++.++++++.+++.. ++.+...|+...- .
T Consensus 46 ~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~~ 125 (375)
T d2dula1 46 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAE 125 (375)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHH
T ss_pred CCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhHh
Confidence 7899999999999999887766 3589999999999999999999887632 2455566654331 1
Q ss_pred CCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 223 PDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 223 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
....||+|.+-- +..+..+++.+.+.++.||.|+++.
T Consensus 126 ~~~~fDvIDiDP----fGs~~pfldsAi~a~~~~Gll~vTa 162 (375)
T d2dula1 126 RHRYFHFIDLDP----FGSPMEFLDTALRSAKRRGILGVTA 162 (375)
T ss_dssp STTCEEEEEECC----SSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred hcCcCCcccCCC----CCCcHHHHHHHHHHhccCCEEEEEe
Confidence 246799987652 4566789999999999999999975
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.70 E-value=6.1e-05 Score=63.27 Aligned_cols=114 Identities=18% Similarity=0.202 Sum_probs=67.6
Q ss_pred HHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcC-CCC
Q 017428 142 IEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD-ALQ 219 (371)
Q Consensus 142 ~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d-~~~ 219 (371)
+..+.++..+++ ..+|+|+|||.|.|+..++.+. ...|.|+|+--...+. .......+. +-+.+...+ +..
T Consensus 55 l~~~~~~~~~~~-----~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~-P~~~~~~~~-ni~~~~~~~dv~~ 127 (257)
T d2p41a1 55 LRWFVERNLVTP-----EGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEE-PIPMSTYGW-NLVRLQSGVDVFF 127 (257)
T ss_dssp HHHHHHTTSSCC-----CEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCC-CCCCCSTTG-GGEEEECSCCTTT
T ss_pred HHHHHHhcCccC-----CCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccC-Ccccccccc-ccccchhhhhHHh
Confidence 344555544443 7899999999999999998764 3567777773211000 000000000 113333222 222
Q ss_pred CCCCCCccceEEccccccCcCCH-------HHHHHHHHHhcCCCcEEEEEecc
Q 017428 220 QPFPDGQFDLVWSMESGEHMPDK-------SKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 220 ~~~~~~~fD~v~~~~~l~~~~~~-------~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
.+.+..|.|+|-.+- +-+++ -++++-+.++|+|||.+++-.++
T Consensus 128 --l~~~~~D~vlcDm~e-ss~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~ 177 (257)
T d2p41a1 128 --IPPERCDTLLCDIGE-SSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLN 177 (257)
T ss_dssp --SCCCCCSEEEECCCC-CCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESC
T ss_pred --cCCCcCCEEEeeCCC-CCCCchhhhhhHHHHHHHHHHHcccCCEEEEEECC
Confidence 346889999987543 23333 25777888999999998886654
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=97.68 E-value=6.4e-05 Score=71.52 Aligned_cols=119 Identities=13% Similarity=0.125 Sum_probs=79.9
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-------------------CCEEEEEeCCHHHHHHHHHHH
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-------------------GAKCQGITLSPVQAQRANALA 201 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~-------------------~~~v~gvD~s~~~~~~a~~~~ 201 (371)
+++.++..+... ++.+|+|.+||+|.+...+.+.. ...++|+|+++.+...|+.+.
T Consensus 152 Iv~~mv~ll~~~-----~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl 226 (524)
T d2ar0a1 152 LIKTIIHLLKPQ-----PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNC 226 (524)
T ss_dssp HHHHHHHHHCCC-----TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHH
T ss_pred hhHhhhhcccCc-----cchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHH
Confidence 344445554433 37899999999999998776643 125899999999999998877
Q ss_pred HHcCCCCC----eEEEEcCCCCCC-CCCCccceEEccccccCc-------------CC-HHHHHHHHHHhcCCCcEEEEE
Q 017428 202 AARGLADK----VSFQVGDALQQP-FPDGQFDLVWSMESGEHM-------------PD-KSKFVSELARVTAPAGTIIIV 262 (371)
Q Consensus 202 ~~~~~~~~----v~~~~~d~~~~~-~~~~~fD~v~~~~~l~~~-------------~~-~~~~l~~~~~~LkpgG~l~i~ 262 (371)
--.+...+ -.+...+....+ .....||+|+++--+..- .+ ...+++.+.+.|+|||++.++
T Consensus 227 ~l~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiI 306 (524)
T d2ar0a1 227 LLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVV 306 (524)
T ss_dssp HTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred HhhcccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEE
Confidence 65554322 123333433221 234679999987544211 11 135899999999999998887
Q ss_pred ec
Q 017428 263 TW 264 (371)
Q Consensus 263 ~~ 264 (371)
..
T Consensus 307 lP 308 (524)
T d2ar0a1 307 VP 308 (524)
T ss_dssp EE
T ss_pred Ee
Confidence 63
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.53 E-value=0.00047 Score=54.83 Aligned_cols=102 Identities=25% Similarity=0.284 Sum_probs=69.7
Q ss_pred HHHcCCCCCCCCCCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---
Q 017428 146 LRFAGVSEDPTKRPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--- 221 (371)
Q Consensus 146 l~~~~~~~~~~~~~~~VLDlG~G-tG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--- 221 (371)
++...+++ +.+||-+||| .|..+..+++..+++|+++|.++.-++.|++. + ....+...+.....
T Consensus 19 ~~~~~~~~-----g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~----g--a~~~~~~~~~~~~~~~~ 87 (170)
T d1e3ja2 19 CRRAGVQL-----GTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNC----G--ADVTLVVDPAKEEESSI 87 (170)
T ss_dssp HHHHTCCT-----TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT----T--CSEEEECCTTTSCHHHH
T ss_pred HHHhCCCC-----CCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHc----C--CcEEEeccccccccchh
Confidence 34455554 8999999998 47777888887799999999999999888773 2 12323222221111
Q ss_pred ------CCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 222 ------FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 222 ------~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
...+.+|+|+-.- .....+..+.++|+|+|.+++.-.
T Consensus 88 ~~~~~~~~g~g~D~vid~~------g~~~~~~~a~~~~~~~G~iv~~G~ 130 (170)
T d1e3ja2 88 IERIRSAIGDLPNVTIDCS------GNEKCITIGINITRTGGTLMLVGM 130 (170)
T ss_dssp HHHHHHHSSSCCSEEEECS------CCHHHHHHHHHHSCTTCEEEECSC
T ss_pred hhhhhcccccCCceeeecC------CChHHHHHHHHHHhcCCceEEEec
Confidence 1135688887432 224678889999999999998764
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=97.51 E-value=0.00081 Score=59.93 Aligned_cols=163 Identities=13% Similarity=0.106 Sum_probs=93.4
Q ss_pred CCEEEEECCCcChHHHHHHH--------Hc---------CCEEEEEeCCHHHHHHHHHHHHHc-CCCCC--eEEEEcCCC
Q 017428 159 PKNVVDVGCGIGGSSRYLAK--------KF---------GAKCQGITLSPVQAQRANALAAAR-GLADK--VSFQVGDAL 218 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~--------~~---------~~~v~gvD~s~~~~~~a~~~~~~~-~~~~~--v~~~~~d~~ 218 (371)
..+|.|+||.+|..+..+.. .+ ..+|..-|+-..-....=+.+... ...++ +.-+.+.+-
T Consensus 52 ~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY 131 (359)
T d1m6ex_ 52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY 131 (359)
T ss_dssp EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred ceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchh
Confidence 47899999999997743221 11 125666666543332221111111 11111 222334444
Q ss_pred CCCCCCCccceEEccccccCcC---------------------------------CHHHHHHHHHHhcCCCcEEEEEecc
Q 017428 219 QQPFPDGQFDLVWSMESGEHMP---------------------------------DKSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 219 ~~~~~~~~fD~v~~~~~l~~~~---------------------------------~~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
.--||+++.|++++..++|++. |+..+|+.=.+=|+|||+++++..+
T Consensus 132 ~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~g 211 (359)
T d1m6ex_ 132 GRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILG 211 (359)
T ss_dssp SCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEE
T ss_pred hhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEec
Confidence 4457899999999999999863 2235666667788999999998876
Q ss_pred CCCCCcCc---cccChHHHHHHHHHh----------hccCCCC-CCCHHHHHHHHHhCC-CceEEEEecCC
Q 017428 266 HRDLAPSE---ESLQPWEQELLKKIC----------DAYYLPA-WCSTADYVKLLQSLS-LEDIKAEDWSQ 321 (371)
Q Consensus 266 ~~~~~~~~---~~~~~~~~~~~~~~~----------~~~~~~~-~~~~~~~~~ll~~aG-F~~v~~~~~~~ 321 (371)
.+...+.. ..+.......+.... +.+..|. +.+.++++..+++.| |++..++.+..
T Consensus 212 r~~~~~~~~~~~~~~~~l~~al~dmv~eGlI~eek~dsfn~P~Y~ps~eEv~~~ie~~gsF~i~~~e~~~~ 282 (359)
T d1m6ex_ 212 RRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEASEI 282 (359)
T ss_dssp CSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEEEEEE
T ss_pred cCCCCCCCCccchHHHHHHHHHHHHHHcCCCCHHHHHhccCccccCCHHHHHHHhccCCCeeeeeeEeeec
Confidence 54432211 112223333333322 2223332 368999999998866 77777665443
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.22 E-value=0.00025 Score=56.48 Aligned_cols=96 Identities=21% Similarity=0.199 Sum_probs=64.7
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc-CCCCC-CCCCCccceEEccc
Q 017428 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVG-DALQQ-PFPDGQFDLVWSME 234 (371)
Q Consensus 158 ~~~~VLDlG~G-tG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~-~~~~~~fD~v~~~~ 234 (371)
++.+||-+|+| .|..+..+++..|++|+++|.+++.++.+++. |.. .++.. +-.+. ....+.||+|+...
T Consensus 27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~l----Ga~---~~i~~~~~~~~~~~~~~~~d~vi~~~ 99 (168)
T d1piwa2 27 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKM----GAD---HYIATLEEGDWGEKYFDTFDLIVVCA 99 (168)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHH----TCS---EEEEGGGTSCHHHHSCSCEEEEEECC
T ss_pred CCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhcc----CCc---EEeeccchHHHHHhhhcccceEEEEe
Confidence 48999999998 57788888887799999999999988887763 421 22221 11111 11246799887643
Q ss_pred cccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 235 SGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 235 ~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
.-.+-. .+..+.+.|+|+|.+++...
T Consensus 100 ~~~~~~----~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1piwa2 100 SSLTDI----DFNIMPKAMKVGGRIVSISI 125 (168)
T ss_dssp SCSTTC----CTTTGGGGEEEEEEEEECCC
T ss_pred cCCccc----hHHHHHHHhhccceEEEecc
Confidence 322211 14567889999999998754
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=97.11 E-value=0.00064 Score=57.44 Aligned_cols=92 Identities=18% Similarity=0.188 Sum_probs=66.1
Q ss_pred HHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcC--------CCCCeEEEEc
Q 017428 144 ETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARG--------LADKVSFQVG 215 (371)
Q Consensus 144 ~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--------~~~~v~~~~~ 215 (371)
.+.+.++++. ....+|||.-||.|..+..++.. +++|+++|-++......+..++... +..+++++.+
T Consensus 77 ~l~kA~gl~~---~~~~~VlD~TaGlG~Da~vlA~~-G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~ 152 (250)
T d2oyra1 77 AVAKAVGIKG---DYLPDVVDATAGLGRDAFVLASV-GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA 152 (250)
T ss_dssp HHHHHTTCBT---TBCCCEEETTCTTCHHHHHHHHH-TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEES
T ss_pred HHHHHhcCCC---CCCCEEEECCCcccHHHHHHHhC-CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecC
Confidence 3444555543 12348999999999999999986 8999999999988777666554331 1137899999
Q ss_pred CCCCC-CCCCCccceEEccccccCc
Q 017428 216 DALQQ-PFPDGQFDLVWSMESGEHM 239 (371)
Q Consensus 216 d~~~~-~~~~~~fD~v~~~~~l~~~ 239 (371)
|..+. .-..++||+|++--++.+-
T Consensus 153 Ds~~~L~~~~~~~DvIYlDPMFp~~ 177 (250)
T d2oyra1 153 SSLTALTDITPRPQVVYLDPMFPHK 177 (250)
T ss_dssp CHHHHSTTCSSCCSEEEECCCCCCC
T ss_pred cHHHHHhccCCCCCEEEECCCCccc
Confidence 97553 2235679999987777554
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=97.07 E-value=0.0021 Score=52.33 Aligned_cols=105 Identities=25% Similarity=0.218 Sum_probs=71.1
Q ss_pred HHHcCCCCCCCCCCCEEEEECCCc-ChHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--
Q 017428 146 LRFAGVSEDPTKRPKNVVDVGCGI-GGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-- 221 (371)
Q Consensus 146 l~~~~~~~~~~~~~~~VLDlG~Gt-G~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-- 221 (371)
++...+++ +.+||-+|||. |..+..+++..+ .+|+++|.++.-++.|++. | ..... +..+.+
T Consensus 18 ~~~a~v~~-----G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~----G----a~~~~-~~~~~~~~ 83 (195)
T d1kola2 18 AVTAGVGP-----GSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ----G----FEIAD-LSLDTPLH 83 (195)
T ss_dssp HHHTTCCT-----TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----T----CEEEE-TTSSSCHH
T ss_pred HHHhCCCC-----CCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc----c----ccEEE-eCCCcCHH
Confidence 34555665 99999999998 667777777664 5899999999999888763 3 33333 222221
Q ss_pred ------CCCCccceEEcccccc------Cc---CCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 222 ------FPDGQFDLVWSMESGE------HM---PDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 222 ------~~~~~fD~v~~~~~l~------~~---~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
.....+|+++-.-... +. ......++.+.++++|||.+.+.-.
T Consensus 84 ~~i~~~t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~ 141 (195)
T d1kola2 84 EQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL 141 (195)
T ss_dssp HHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred HHHHHHhCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeee
Confidence 1234689888432211 11 1235789999999999999999764
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.05 E-value=0.0021 Score=50.69 Aligned_cols=92 Identities=15% Similarity=0.116 Sum_probs=61.5
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CCCCccceEE
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FPDGQFDLVW 231 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~~fD~v~ 231 (371)
++.+||=+|+|. |..+..+++..+++|+++|.++..++.+++ .|. ..++...-.+.. ...+.+|.|+
T Consensus 27 ~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~----~Ga---~~~i~~~~~~~~~~~~~~~~g~~~~i~ 99 (166)
T d1llua2 27 PGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARK----LGA---SLTVNARQEDPVEAIQRDIGGAHGVLV 99 (166)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----TTC---SEEEETTTSCHHHHHHHHHSSEEEEEE
T ss_pred CCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhc----cCc---cccccccchhHHHHHHHhhcCCccccc
Confidence 388999999985 667777888779999999999999888775 332 223322222210 1123344444
Q ss_pred ccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 232 SMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 232 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+.. . ...+..+.+.|+|||.+++.-
T Consensus 100 ~~~------~-~~~~~~~~~~l~~~G~iv~~G 124 (166)
T d1llua2 100 TAV------S-NSAFGQAIGMARRGGTIALVG 124 (166)
T ss_dssp CCS------C-HHHHHHHHTTEEEEEEEEECC
T ss_pred ccc------c-chHHHHHHHHhcCCcEEEEEE
Confidence 322 1 356788999999999999865
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.00 E-value=0.0026 Score=50.38 Aligned_cols=101 Identities=19% Similarity=0.166 Sum_probs=67.5
Q ss_pred HHHcCCCCCCCCCCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--
Q 017428 146 LRFAGVSEDPTKRPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-- 221 (371)
Q Consensus 146 l~~~~~~~~~~~~~~~VLDlG~Gt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-- 221 (371)
+++..+++ +.+||=+|+|. |..+..+++..++ +|+++|.++.-++.|++. |. -.+...+-.+..
T Consensus 19 ~~~~~~~~-----gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~----Ga---~~~~~~~~~~~~~~ 86 (171)
T d1pl8a2 19 CRRGGVTL-----GHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI----GA---DLVLQISKESPQEI 86 (171)
T ss_dssp HHHHTCCT-----TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TC---SEEEECSSCCHHHH
T ss_pred HHHhCCCC-----CCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHh----CC---cccccccccccccc
Confidence 34455554 88999999986 5566667776676 899999999999988762 32 122222222210
Q ss_pred ------CCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 222 ------FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 222 ------~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
.....+|+|+-.- .. ...++.+.+.+++||.+++...
T Consensus 87 ~~~~~~~~g~g~Dvvid~~-----G~-~~~~~~a~~~~~~gG~iv~~G~ 129 (171)
T d1pl8a2 87 ARKVEGQLGCKPEVTIECT-----GA-EASIQAGIYATRSGGTLVLVGL 129 (171)
T ss_dssp HHHHHHHHTSCCSEEEECS-----CC-HHHHHHHHHHSCTTCEEEECSC
T ss_pred cccccccCCCCceEEEecc-----CC-chhHHHHHHHhcCCCEEEEEec
Confidence 0124688887542 12 4578899999999999999764
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.97 E-value=0.00092 Score=53.46 Aligned_cols=99 Identities=22% Similarity=0.259 Sum_probs=68.4
Q ss_pred HHHcCCCCCCCCCCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--
Q 017428 146 LRFAGVSEDPTKRPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-- 221 (371)
Q Consensus 146 l~~~~~~~~~~~~~~~VLDlG~Gt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-- 221 (371)
++...+++ +.+||=+|||. |..+..+++..++ +|+++|.++.-++.+++. |. ..++ |..+..
T Consensus 20 ~~~a~~~~-----g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~l----Ga---~~~i--~~~~~~~~ 85 (174)
T d1jqba2 20 AELADIEM-----GSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFY----GA---TDIL--NYKNGHIE 85 (174)
T ss_dssp HHHTTCCT-----TCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHH----TC---SEEE--CGGGSCHH
T ss_pred HHHhCCCC-----CCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhh----Cc---cccc--cccchhHH
Confidence 34555554 88999999987 7888888887775 799999999988888762 32 2222 222211
Q ss_pred ------CCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 222 ------FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 222 ------~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
.....+|+|+-.-.- ...++++.+.++|+|.+++.-.
T Consensus 86 ~~v~~~t~g~G~D~vid~~g~------~~~~~~a~~~~~~~G~iv~~G~ 128 (174)
T d1jqba2 86 DQVMKLTNGKGVDRVIMAGGG------SETLSQAVKMVKPGGIISNINY 128 (174)
T ss_dssp HHHHHHTTTSCEEEEEECSSC------TTHHHHHHHHEEEEEEEEECCC
T ss_pred HHHHHHhhccCcceEEEccCC------HHHHHHHHHHHhcCCEEEEEee
Confidence 123459988754321 2457888899999999999764
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.92 E-value=0.0013 Score=58.11 Aligned_cols=75 Identities=12% Similarity=0.090 Sum_probs=57.7
Q ss_pred HHHHHHHHcCCCCCC-CCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 017428 141 MIEETLRFAGVSEDP-TKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~-~~~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (371)
+++.+++.+.+.+.. ...+..|||||.|.|.++..+.+.. ..+|+++|+++...+..++.+. .+++.++.+|+.
T Consensus 25 i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~----~~~~~ii~~D~l 100 (322)
T d1i4wa_ 25 VYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE----GSPLQILKRDPY 100 (322)
T ss_dssp HHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT----TSSCEEECSCTT
T ss_pred HHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc----CCCcEEEeCchh
Confidence 566666666554311 1246789999999999999999875 3589999999999999887753 257899999986
Q ss_pred C
Q 017428 219 Q 219 (371)
Q Consensus 219 ~ 219 (371)
.
T Consensus 101 ~ 101 (322)
T d1i4wa_ 101 D 101 (322)
T ss_dssp C
T ss_pred h
Confidence 5
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.87 E-value=0.002 Score=51.68 Aligned_cols=92 Identities=21% Similarity=0.185 Sum_probs=64.4
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----------CCC
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----------FPD 224 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~~~ 224 (371)
++.+||-+|+|. |..+..+++..|+ +|+++|.++..++.+++. |. . .++ |..+.. ...
T Consensus 28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga--~-~vi--~~~~~~~~~~~~~i~~~~~~ 98 (182)
T d1vj0a2 28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI----GA--D-LTL--NRRETSVEERRKAIMDITHG 98 (182)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT----TC--S-EEE--ETTTSCHHHHHHHHHHHTTT
T ss_pred CCCEEEEECCCccchhheecccccccccccccccccccccccccc----cc--e-EEE--eccccchHHHHHHHHHhhCC
Confidence 489999999984 7788888888786 899999999999888762 32 1 222 222111 123
Q ss_pred CccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 225 GQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 225 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
..+|+|+-.-. . ...++.+.+.|+|||.+++...
T Consensus 99 ~g~Dvvid~vG-----~-~~~~~~a~~~l~~~G~iv~~G~ 132 (182)
T d1vj0a2 99 RGADFILEATG-----D-SRALLEGSELLRRGGFYSVAGV 132 (182)
T ss_dssp SCEEEEEECSS-----C-TTHHHHHHHHEEEEEEEEECCC
T ss_pred CCceEEeecCC-----c-hhHHHHHHHHhcCCCEEEEEee
Confidence 45898874321 1 2457888999999999988754
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=96.82 E-value=0.0032 Score=50.08 Aligned_cols=94 Identities=18% Similarity=0.208 Sum_probs=64.1
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----CCCCCccceE
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-----PFPDGQFDLV 230 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~fD~v 230 (371)
++.+||=+|||. |..+..+++..++ .|+++|.++.-++.+++. |. ..++..+-.+. .+.++.||+|
T Consensus 28 ~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~----Ga---~~~i~~~~~~~~~~i~~~t~gg~D~v 100 (174)
T d1f8fa2 28 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----GA---THVINSKTQDPVAAIKEITDGGVNFA 100 (174)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----TC---SEEEETTTSCHHHHHHHHTTSCEEEE
T ss_pred CCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHc----CC---eEEEeCCCcCHHHHHHHHcCCCCcEE
Confidence 489999999985 4456677776654 678889999988888763 32 23443332221 1234679988
Q ss_pred EccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
+-.- -....++.+.++++|+|.+++.-.
T Consensus 101 id~~------G~~~~~~~~~~~~~~~G~i~~~G~ 128 (174)
T d1f8fa2 101 LEST------GSPEILKQGVDALGILGKIAVVGA 128 (174)
T ss_dssp EECS------CCHHHHHHHHHTEEEEEEEEECCC
T ss_pred EEcC------CcHHHHHHHHhcccCceEEEEEee
Confidence 7432 124577889999999999998653
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=96.74 E-value=0.0023 Score=50.55 Aligned_cols=101 Identities=22% Similarity=0.215 Sum_probs=67.4
Q ss_pred HHHcCCCCCCCCCCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-CCC
Q 017428 146 LRFAGVSEDPTKRPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-PFP 223 (371)
Q Consensus 146 l~~~~~~~~~~~~~~~VLDlG~Gt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~ 223 (371)
++...+++ +.+||=+|+|. |.++..+++..+++++++|.++...+.+++ .|. -.++...-.+. ...
T Consensus 23 l~~~~~~~-----G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~----lGa---d~~i~~~~~~~~~~~ 90 (168)
T d1uufa2 23 LRHWQAGP-----GKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKA----LGA---DEVVNSRNADEMAAH 90 (168)
T ss_dssp HHHTTCCT-----TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH----HTC---SEEEETTCHHHHHTT
T ss_pred HHHhCCCC-----CCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhc----cCC---cEEEECchhhHHHHh
Confidence 34455554 89999999985 778888888889999999999988777765 332 22222211111 122
Q ss_pred CCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 224 DGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 224 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
...+|+++-.-.-. ..+....+.|+|+|.+++.-.
T Consensus 91 ~~~~D~vid~~g~~------~~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1uufa2 91 LKSFDFILNTVAAP------HNLDDFTTLLKRDGTMTLVGA 125 (168)
T ss_dssp TTCEEEEEECCSSC------CCHHHHHTTEEEEEEEEECCC
T ss_pred cCCCceeeeeeecc------hhHHHHHHHHhcCCEEEEecc
Confidence 35699887543221 235677889999999998753
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=96.71 E-value=0.00043 Score=54.52 Aligned_cols=100 Identities=16% Similarity=0.160 Sum_probs=73.0
Q ss_pred CCCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccc
Q 017428 157 KRPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES 235 (371)
Q Consensus 157 ~~~~~VLDlG~Gt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~ 235 (371)
-++.+|+=||+|. |..++..+..+++.|+.+|.+++.++..+.... .++++...+-..+.-.-...|+|+..-.
T Consensus 30 v~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~-----~~~~~~~~~~~~l~~~~~~aDivI~aal 104 (168)
T d1pjca1 30 VKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFG-----SRVELLYSNSAEIETAVAEADLLIGAVL 104 (168)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG-----GGSEEEECCHHHHHHHHHTCSEEEECCC
T ss_pred CCCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhc-----ccceeehhhhhhHHHhhccCcEEEEeee
Confidence 3589999999996 777888888889999999999999988877653 3466665553333211245799987765
Q ss_pred ccCcCCHHHHHHHHHHhcCCCcEEEE
Q 017428 236 GEHMPDKSKFVSELARVTAPAGTIII 261 (371)
Q Consensus 236 l~~~~~~~~~l~~~~~~LkpgG~l~i 261 (371)
+..-+-+.-+-+++.+.+|||..++=
T Consensus 105 ipG~~aP~lIt~~mv~~Mk~GSVIVD 130 (168)
T d1pjca1 105 VPGRRAPILVPASLVEQMRTGSVIVD 130 (168)
T ss_dssp CTTSSCCCCBCHHHHTTSCTTCEEEE
T ss_pred cCCcccCeeecHHHHhhcCCCcEEEE
Confidence 54444445566789999999987764
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=96.68 E-value=0.0082 Score=47.42 Aligned_cols=94 Identities=17% Similarity=0.116 Sum_probs=63.2
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CCCCccceE
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FPDGQFDLV 230 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~~fD~v 230 (371)
|+.+||=+|+|. |..+..+++..+ ..|+++|.++..++.+++. +. ..++..+-.... .....+|+|
T Consensus 32 ~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~----ga---~~~i~~~~~~~~~~~~~~~~~g~d~v 104 (172)
T d1h2ba2 32 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERL----GA---DHVVDARRDPVKQVMELTRGRGVNVA 104 (172)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHT----TC---SEEEETTSCHHHHHHHHTTTCCEEEE
T ss_pred CCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhc----cc---ceeecCcccHHHHHHHhhCCCCceEE
Confidence 488999999986 555677777664 6889999999888887762 32 233332211110 123458888
Q ss_pred EccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
+-.-. ....++...+.|++||++++.-.
T Consensus 105 id~~g------~~~~~~~a~~~l~~~G~iv~~G~ 132 (172)
T d1h2ba2 105 MDFVG------SQATVDYTPYLLGRMGRLIIVGY 132 (172)
T ss_dssp EESSC------CHHHHHHGGGGEEEEEEEEECCC
T ss_pred EEecC------cchHHHHHHHHHhCCCEEEEEeC
Confidence 75421 23468899999999999998764
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=96.68 E-value=0.0046 Score=49.14 Aligned_cols=94 Identities=19% Similarity=0.198 Sum_probs=65.6
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-------CCCCccc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-------FPDGQFD 228 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-------~~~~~fD 228 (371)
++.+||=+|||. |..+..+++..++ .|+.+|.++.-++.|++ .|. ..++...-.+.. ...+.+|
T Consensus 28 ~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~----~Ga---~~~i~~~~~~~~~~~~~~~~~~~G~d 100 (174)
T d1e3ia2 28 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA----LGA---TDCLNPRELDKPVQDVITELTAGGVD 100 (174)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTC---SEEECGGGCSSCHHHHHHHHHTSCBS
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHH----hCC---CcccCCccchhhhhhhHhhhhcCCCc
Confidence 489999999997 8888889888775 79999999998888776 332 222221111111 1235688
Q ss_pred eEEccccccCcCCHHHHHHHHHHhcCCC-cEEEEEec
Q 017428 229 LVWSMESGEHMPDKSKFVSELARVTAPA-GTIIIVTW 264 (371)
Q Consensus 229 ~v~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~ 264 (371)
+|+-.- -....+.+..+.++|| |.+++.-.
T Consensus 101 ~vie~~------G~~~~~~~a~~~~~~g~G~~v~vG~ 131 (174)
T d1e3ia2 101 YSLDCA------GTAQTLKAAVDCTVLGWGSCTVVGA 131 (174)
T ss_dssp EEEESS------CCHHHHHHHHHTBCTTTCEEEECCC
T ss_pred EEEEec------ccchHHHHHHHHhhcCCeEEEecCC
Confidence 886432 2246789999999997 99988753
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.64 E-value=0.0042 Score=49.29 Aligned_cols=90 Identities=17% Similarity=0.224 Sum_probs=64.5
Q ss_pred CCCEEEEECC--CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------CCCCcc
Q 017428 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------FPDGQF 227 (371)
Q Consensus 158 ~~~~VLDlG~--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~~f 227 (371)
++.+||-.|+ |.|..+..+++..+++|++++.+++..+.+++ .|.. .++ |..+.. .....+
T Consensus 28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~----~Ga~---~vi--~~~~~~~~~~i~~~t~~~g~ 98 (174)
T d1yb5a2 28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQ----NGAH---EVF--NHREVNYIDKIKKYVGEKGI 98 (174)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTCS---EEE--ETTSTTHHHHHHHHHCTTCE
T ss_pred CCCEEEEEeccccccccccccccccCcccccccccccccccccc----cCcc---ccc--ccccccHHHHhhhhhccCCc
Confidence 4899999996 45778888888889999999999887777665 3432 222 333321 124669
Q ss_pred ceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 228 DLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 228 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
|+|+... . ...++...++|+|+|.++..-
T Consensus 99 d~v~d~~-----g--~~~~~~~~~~l~~~G~iv~~G 127 (174)
T d1yb5a2 99 DIIIEML-----A--NVNLSKDLSLLSHGGRVIVVG 127 (174)
T ss_dssp EEEEESC-----H--HHHHHHHHHHEEEEEEEEECC
T ss_pred eEEeecc-----c--HHHHHHHHhccCCCCEEEEEe
Confidence 9988642 1 346888899999999999864
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.46 E-value=0.014 Score=45.90 Aligned_cols=94 Identities=19% Similarity=0.233 Sum_probs=63.4
Q ss_pred CCCEEEEECC-C-cChHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC------CCCCccc
Q 017428 158 RPKNVVDVGC-G-IGGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP------FPDGQFD 228 (371)
Q Consensus 158 ~~~~VLDlG~-G-tG~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------~~~~~fD 228 (371)
++.+||=+|+ | .|..+..+++..+ ..|+++|.++.-++.+++. |. -.++..+-.+.. ...+.||
T Consensus 27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~----Ga---~~~i~~~~~~~~~~~~~~~~~~~~d 99 (170)
T d1jvba2 27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA----GA---DYVINASMQDPLAEIRRITESKGVD 99 (170)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH----TC---SEEEETTTSCHHHHHHHHTTTSCEE
T ss_pred CCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHc----CC---ceeeccCCcCHHHHHHHHhhcccch
Confidence 4899999996 3 4566677777665 6999999999988888763 32 122332222210 1235699
Q ss_pred eEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 229 LVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 229 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
+|+-.. --...++.+.+.++|||.+++.-.
T Consensus 100 ~vid~~------g~~~~~~~a~~~l~~~G~iv~~G~ 129 (170)
T d1jvba2 100 AVIDLN------NSEKTLSVYPKALAKQGKYVMVGL 129 (170)
T ss_dssp EEEESC------CCHHHHTTGGGGEEEEEEEEECCS
T ss_pred hhhccc------ccchHHHhhhhhcccCCEEEEecc
Confidence 888642 224567788899999999998754
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.34 E-value=0.0085 Score=46.93 Aligned_cols=92 Identities=15% Similarity=0.121 Sum_probs=61.2
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC------CCCCccceE
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP------FPDGQFDLV 230 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------~~~~~fD~v 230 (371)
|+.+||=.|+|. |..+..+++..+++|+++|.++.-++.+++ .|. ........+.. ...+.+|+|
T Consensus 27 ~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~----~Ga----~~~~~~~~~~~~~~~~~~~~~~~~~v 98 (168)
T d1rjwa2 27 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE----LGA----DLVVNPLKEDAAKFMKEKVGGVHAAV 98 (168)
T ss_dssp TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----TTC----SEEECTTTSCHHHHHHHHHSSEEEEE
T ss_pred CCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhh----cCc----ceecccccchhhhhcccccCCCceEE
Confidence 489999999986 555666777668999999999999888766 332 22222222211 123444444
Q ss_pred EccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
+.. .. ...+..+.+.|+|||.+++...
T Consensus 99 ~~~------~~-~~~~~~a~~~l~~~G~i~~~g~ 125 (168)
T d1rjwa2 99 VTA------VS-KPAFQSAYNSIRRGGACVLVGL 125 (168)
T ss_dssp ESS------CC-HHHHHHHHHHEEEEEEEEECCC
T ss_pred eec------CC-HHHHHHHHHHhccCCceEeccc
Confidence 332 12 4568899999999999999753
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=95.86 E-value=0.0053 Score=48.79 Aligned_cols=96 Identities=20% Similarity=0.231 Sum_probs=64.4
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC------C-------CCC--
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA------L-------QQP-- 221 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~------~-------~~~-- 221 (371)
++.+||=||+|. |..+...+..+|+.|+.+|.++..++..+... -.|+..+. + ...
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~--------~~~i~~~~~~~~~~~~~~gyA~~~s~~ 99 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLG--------GKFITVDDEAMKTAETAGGYAKEMGEE 99 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTT--------CEECCC---------------------
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhh--------cceEEEeccccccccccccchhhcCHH
Confidence 478999999997 66788888888999999999998888777642 12221111 0 000
Q ss_pred CC----------CCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEE
Q 017428 222 FP----------DGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIII 261 (371)
Q Consensus 222 ~~----------~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i 261 (371)
+. -...|+|+..-.+..-.-+.-+-+++.+.+|||..++=
T Consensus 100 ~~~~~~~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVD 149 (183)
T d1l7da1 100 FRKKQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIID 149 (183)
T ss_dssp --CCHHHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEE
T ss_pred HHHHHHHHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEE
Confidence 00 12479988766554444444466788999999997764
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=95.61 E-value=0.016 Score=48.39 Aligned_cols=56 Identities=21% Similarity=0.236 Sum_probs=47.0
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH
Q 017428 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAA 202 (371)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~ 202 (371)
.+++.++....- ++..|||.=||+|..+.+..+. +-+.+|+|++++.++.|++++.
T Consensus 200 ~L~~~lI~~~s~------~gd~VlDpF~GSGTT~~aa~~~-~R~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 200 DLIERIIRASSN------PNDLVLDCFMGSGTTAIVAKKL-GRNFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp HHHHHHHHHHCC------TTCEEEESSCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHH
T ss_pred hHHHHHHHHhCC------CCCEEEECCCCchHHHHHHHHc-CCeEEEEeCCHHHHHHHHHHHc
Confidence 466777776652 4899999999999998777664 8899999999999999999875
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.58 E-value=0.017 Score=45.75 Aligned_cols=92 Identities=16% Similarity=0.171 Sum_probs=62.8
Q ss_pred CCCEEEEECC--CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC------CCCCccce
Q 017428 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP------FPDGQFDL 229 (371)
Q Consensus 158 ~~~~VLDlG~--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------~~~~~fD~ 229 (371)
++.+||=.|. |.|..+..+++..++++++++-+++..+.+++ .|.. .++...-.+.. .....||+
T Consensus 25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~----~Ga~---~vi~~~~~~~~~~v~~~t~~~g~d~ 97 (183)
T d1pqwa_ 25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSR----LGVE---YVGDSRSVDFADEILELTDGYGVDV 97 (183)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHT----TCCS---EEEETTCSTHHHHHHHHTTTCCEEE
T ss_pred CCCEEEEECCCCCcccccchhhccccccceeeeccccccccccc----cccc---ccccCCccCHHHHHHHHhCCCCEEE
Confidence 4889999773 45778888888879999999988887777664 3431 22221211110 13467999
Q ss_pred EEccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 230 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
|+.... ...++.+.++|+++|+++..-
T Consensus 98 v~d~~g-------~~~~~~~~~~l~~~G~~v~~G 124 (183)
T d1pqwa_ 98 VLNSLA-------GEAIQRGVQILAPGGRFIELG 124 (183)
T ss_dssp EEECCC-------THHHHHHHHTEEEEEEEEECS
T ss_pred EEeccc-------chHHHHHHHHhcCCCEEEEEc
Confidence 986432 246778899999999998863
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=95.55 E-value=0.15 Score=43.57 Aligned_cols=104 Identities=15% Similarity=0.100 Sum_probs=70.8
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCC--CCeEEEEcCCCCCC--------CCCCccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLA--DKVSFQVGDALQQP--------FPDGQFD 228 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~~--------~~~~~fD 228 (371)
...|+.+|||--.-...+...-+..++=||. |++++.-++.+.+.+.. .+..++..|+.+.. +..+.--
T Consensus 90 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~~pt 168 (297)
T d2uyoa1 90 IRQFVILASGLDSRAYRLDWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSART 168 (297)
T ss_dssp CCEEEEETCTTCCHHHHSCCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSCE
T ss_pred CCeEEEeCcccCChhhhcCCCcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCCCCE
Confidence 3457779999877665552211567888885 88888888888776543 35677788887531 1122233
Q ss_pred eEEccccccCcC--CHHHHHHHHHHhcCCCcEEEEEe
Q 017428 229 LVWSMESGEHMP--DKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 229 ~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
++++-.++.+++ +...+++.+.....||+.|++-.
T Consensus 169 l~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d~ 205 (297)
T d2uyoa1 169 AWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVET 205 (297)
T ss_dssp EEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEC
T ss_pred EEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEEe
Confidence 555566777775 35789999999999999988753
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=95.38 E-value=0.01 Score=51.39 Aligned_cols=57 Identities=14% Similarity=0.085 Sum_probs=47.2
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHH
Q 017428 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAA 203 (371)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~ 203 (371)
.++++++....- ++..|||.=||+|..+.+..+. +.+.+|+|++++.++.|++++..
T Consensus 238 ~L~~rlI~~~s~------~gdiVlDpF~GSGTT~~AA~~l-gR~~Ig~El~~~y~~~a~~Rl~~ 294 (320)
T d1booa_ 238 KLPEFFIRMLTE------PDDLVVDIFGGSNTTGLVAERE-SRKWISFEMKPEYVAASAFRFLD 294 (320)
T ss_dssp HHHHHHHHHHCC------TTCEEEETTCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHGGGSC
T ss_pred HHHHHhhhhccc------CCCEEEecCCCCcHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHHHh
Confidence 366777766542 4899999999999999887775 89999999999999999988643
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.28 E-value=0.026 Score=47.74 Aligned_cols=58 Identities=19% Similarity=0.169 Sum_probs=48.5
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc
Q 017428 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR 204 (371)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~ 204 (371)
.+++.++....- ++..|||.=||+|..+.+..+. +-+.+|+|+++...+.|++++...
T Consensus 195 ~L~~~~I~~~s~------~gdiVLDpF~GSGTT~~Aa~~l-gR~~ig~El~~~y~~~a~~Ri~~~ 252 (279)
T d1eg2a_ 195 AVIERLVRALSH------PGSTVLDFFAGSGVTARVAIQE-GRNSICTDAAPVFKEYYQKQLTFL 252 (279)
T ss_dssp HHHHHHHHHHSC------TTCEEEETTCTTCHHHHHHHHH-TCEEEEEESSTHHHHHHHHHHHHC
T ss_pred hHHHHHHHhhcC------CCCEEEecCCCCcHHHHHHHHh-CCeEEEEeCCHHHHHHHHHHHHHh
Confidence 366667765542 4899999999999998887775 889999999999999999998764
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=95.27 E-value=0.073 Score=41.77 Aligned_cols=95 Identities=15% Similarity=0.119 Sum_probs=59.6
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-------CCCCccc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-------FPDGQFD 228 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-------~~~~~fD 228 (371)
++.+||=+|||. |..+..+++..+ .+|+++|.++.-++.|++ .|. ..++...-.+.. ...+.+|
T Consensus 27 ~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~----lGa---~~~i~~~~~d~~~~~~~~~~~~~G~d 99 (174)
T d1p0fa2 27 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE----LGA---TECLNPKDYDKPIYEVICEKTNGGVD 99 (174)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----TTC---SEEECGGGCSSCHHHHHHHHTTSCBS
T ss_pred CCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHH----cCC---cEEEcCCCchhHHHHHHHHhcCCCCc
Confidence 489999999986 445666777665 589999999999988876 332 222221111111 1235688
Q ss_pred eEEccccccCcCCHHHHHHHHHHhcC-CCcEEEEEecc
Q 017428 229 LVWSMESGEHMPDKSKFVSELARVTA-PAGTIIIVTWC 265 (371)
Q Consensus 229 ~v~~~~~l~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~ 265 (371)
+|+-.- .. ...+.+....++ ++|.+++.-..
T Consensus 100 ~vid~~-----g~-~~~~~~~~~~~~~~~G~~v~vG~~ 131 (174)
T d1p0fa2 100 YAVECA-----GR-IETMMNALQSTYCGSGVTVVLGLA 131 (174)
T ss_dssp EEEECS-----CC-HHHHHHHHHTBCTTTCEEEECCCC
T ss_pred EEEEcC-----CC-chHHHHHHHHHHHhcCceEEEEEe
Confidence 887532 22 345566666665 46898887643
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.25 E-value=0.015 Score=46.12 Aligned_cols=97 Identities=11% Similarity=0.110 Sum_probs=63.4
Q ss_pred CCCEEEEECC--CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-CCCCCccceEEccc
Q 017428 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-PFPDGQFDLVWSME 234 (371)
Q Consensus 158 ~~~~VLDlG~--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~v~~~~ 234 (371)
++.+||=-|+ |.|..++.+++..+++|+++.-+++-.+.+++ .|...-+.....+.+.. ....+.||+|+-.-
T Consensus 31 ~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~----lGa~~vi~~~~~~~~~~~~~~~~gvD~vid~v 106 (176)
T d1xa0a2 31 ERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRV----LGAKEVLAREDVMAERIRPLDKQRWAAAVDPV 106 (176)
T ss_dssp GGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHH----TTCSEEEECC---------CCSCCEEEEEECS
T ss_pred CCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHh----cccceeeecchhHHHHHHHhhccCcCEEEEcC
Confidence 3788998885 45678889998889999999999888887775 33321111111111110 12356799887542
Q ss_pred cccCcCCHHHHHHHHHHhcCCCcEEEEEecc
Q 017428 235 SGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 235 ~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
. ...+.+..++|+|||+++.+-..
T Consensus 107 g-------g~~~~~~l~~l~~~Griv~~G~~ 130 (176)
T d1xa0a2 107 G-------GRTLATVLSRMRYGGAVAVSGLT 130 (176)
T ss_dssp T-------TTTHHHHHHTEEEEEEEEECSCC
T ss_pred C-------chhHHHHHHHhCCCceEEEeecc
Confidence 2 12478899999999999997654
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=95.23 E-value=0.067 Score=41.96 Aligned_cols=91 Identities=14% Similarity=0.065 Sum_probs=63.7
Q ss_pred CCCEEEEECCC--cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------CCCCcc
Q 017428 158 RPKNVVDVGCG--IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------FPDGQF 227 (371)
Q Consensus 158 ~~~~VLDlG~G--tG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~~f 227 (371)
++.+||=.|+| .|..+..+++..+++|++++.|++..+.+++ .|.. .++ |..+.+ .....+
T Consensus 28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~----lGa~---~vi--~~~~~d~~~~v~~~t~g~g~ 98 (179)
T d1qora2 28 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALK----AGAW---QVI--NYREEDLVERLKEITGGKKV 98 (179)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH----HTCS---EEE--ETTTSCHHHHHHHHTTTCCE
T ss_pred CCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHh----cCCe---EEE--ECCCCCHHHHHHHHhCCCCe
Confidence 48899998665 4778888888889999999999999888775 3421 222 333322 124568
Q ss_pred ceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 228 DLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 228 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
|+|+-.-.- ..+......|+|+|.+++...
T Consensus 99 d~v~d~~g~-------~~~~~~~~~l~~~G~~v~~g~ 128 (179)
T d1qora2 99 RVVYDSVGR-------DTWERSLDCLQRRGLMVSFGN 128 (179)
T ss_dssp EEEEECSCG-------GGHHHHHHTEEEEEEEEECCC
T ss_pred EEEEeCccH-------HHHHHHHHHHhcCCeeeeccc
Confidence 987754321 246788999999999887543
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=95.19 E-value=0.005 Score=48.74 Aligned_cols=89 Identities=19% Similarity=0.222 Sum_probs=60.0
Q ss_pred CCCEEEEECC-C-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---CCCCccceEEc
Q 017428 158 RPKNVVDVGC-G-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---FPDGQFDLVWS 232 (371)
Q Consensus 158 ~~~~VLDlG~-G-tG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~v~~ 232 (371)
++.+||=.|. | .|..+..+++..|++|++++.+++..+.+++ .|.. . .+ |..+.. .....+|+|+-
T Consensus 27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~----lGa~--~-~i--~~~~~~~~~~~~~g~D~v~d 97 (171)
T d1iz0a2 27 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLA----LGAE--E-AA--TYAEVPERAKAWGGLDLVLE 97 (171)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHH----TTCS--E-EE--EGGGHHHHHHHTTSEEEEEE
T ss_pred CCCEEEEEeccccchhhhhhhhcccccccccccccccccccccc----cccc--e-ee--ehhhhhhhhhcccccccccc
Confidence 4899999884 4 3678888888889999999999887777665 4432 1 11 222211 12356999875
Q ss_pred cccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 233 MESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 233 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
. .. + .+....+.|+|+|.++..-
T Consensus 98 ~--~G--~----~~~~~~~~l~~~G~~v~~G 120 (171)
T d1iz0a2 98 V--RG--K----EVEESLGLLAHGGRLVYIG 120 (171)
T ss_dssp C--SC--T----THHHHHTTEEEEEEEEEC-
T ss_pred c--cc--h----hHHHHHHHHhcCCcEEEEe
Confidence 3 21 1 2567889999999998753
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.93 E-value=0.084 Score=44.25 Aligned_cols=79 Identities=13% Similarity=0.070 Sum_probs=59.3
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----------CCCC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----------FPDG 225 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~~~~ 225 (371)
++.||=.|++.|. +..+++.+ |++|++++.++..++.+.+.++..+.+.++.++.+|+.+.. -..+
T Consensus 10 ~Kv~lITGas~GI-G~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~g 88 (257)
T d1xg5a_ 10 DRLALVTGASGGI-GAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHS 88 (257)
T ss_dssp TCEEEEESTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred CCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 6788888877654 44455544 89999999999999999888888776667889999998742 0136
Q ss_pred ccceEEccccccC
Q 017428 226 QFDLVWSMESGEH 238 (371)
Q Consensus 226 ~fD~v~~~~~l~~ 238 (371)
..|+++.+....+
T Consensus 89 ~iD~lVnnAg~~~ 101 (257)
T d1xg5a_ 89 GVDICINNAGLAR 101 (257)
T ss_dssp CCSEEEECCCCCC
T ss_pred CCCEEEecccccC
Confidence 7898887655443
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=94.83 E-value=0.15 Score=40.09 Aligned_cols=92 Identities=15% Similarity=0.100 Sum_probs=63.3
Q ss_pred CCCEEEEECCCc--ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC------CCCCccce
Q 017428 158 RPKNVVDVGCGI--GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP------FPDGQFDL 229 (371)
Q Consensus 158 ~~~~VLDlG~Gt--G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------~~~~~fD~ 229 (371)
++.+||=.|++. |..+..+++..+++|++++-+++..+.+++ .|. -..+..+-.+.. .....+|+
T Consensus 29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~----~Ga---~~vi~~~~~~~~~~~~~~~~~~Gvd~ 101 (182)
T d1v3va2 29 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQ----IGF---DAAFNYKTVNSLEEALKKASPDGYDC 101 (182)
T ss_dssp SSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTC---SEEEETTSCSCHHHHHHHHCTTCEEE
T ss_pred CCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHh----hhh---hhhcccccccHHHHHHHHhhcCCCce
Confidence 489999888754 667888888889999999999988777665 342 122222212210 12456898
Q ss_pred EEccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 230 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
|+-.- . ...++...++|+|||.+++.-
T Consensus 102 v~D~v-----G--~~~~~~~~~~l~~~G~~v~~G 128 (182)
T d1v3va2 102 YFDNV-----G--GEFLNTVLSQMKDFGKIAICG 128 (182)
T ss_dssp EEESS-----C--HHHHHHHGGGEEEEEEEEECC
T ss_pred eEEec-----C--chhhhhhhhhccCCCeEEeec
Confidence 87432 2 356889999999999999864
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=94.62 E-value=0.12 Score=40.45 Aligned_cols=94 Identities=18% Similarity=0.163 Sum_probs=58.8
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE-cCCCCCC------CCCCccc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQV-GDALQQP------FPDGQFD 228 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~~------~~~~~fD 228 (371)
++.+||=+|||. |..+..+++..+ .+|+++|.+++-++.|++. |. ..++. .|..... .....+|
T Consensus 29 ~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~----GA---~~~in~~~~~~~~~~~~~~~~g~G~d 101 (176)
T d1d1ta2 29 PGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV----GA---TECISPKDSTKPISEVLSEMTGNNVG 101 (176)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHH----TC---SEEECGGGCSSCHHHHHHHHHTSCCC
T ss_pred CCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhc----CC---cEEECccccchHHHHHHHHhccccce
Confidence 489999999986 556677777776 6899999999999998874 32 12221 1111110 1235688
Q ss_pred eEEccccccCcCCHHHHHHHHHH-hcCCCcEEEEEec
Q 017428 229 LVWSMESGEHMPDKSKFVSELAR-VTAPAGTIIIVTW 264 (371)
Q Consensus 229 ~v~~~~~l~~~~~~~~~l~~~~~-~LkpgG~l~i~~~ 264 (371)
+|+-.. ... ..+..... +++++|.+++.-.
T Consensus 102 ~vi~~~-----g~~-~~~~~a~~~~~~~~G~~v~vG~ 132 (176)
T d1d1ta2 102 YTFEVI-----GHL-ETMIDALASCHMNYGTSVVVGV 132 (176)
T ss_dssp EEEECS-----CCH-HHHHHHHTTSCTTTCEEEECSC
T ss_pred EEEEeC-----Cch-HHHHHHHHHhhcCCeEEEEEEc
Confidence 776432 222 33444444 4456689888754
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=94.46 E-value=0.11 Score=43.27 Aligned_cols=122 Identities=16% Similarity=0.108 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc------------------------------------
Q 017428 137 AQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF------------------------------------ 180 (371)
Q Consensus 137 ~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~------------------------------------ 180 (371)
....++...+....-. .+..++|--||+|.+.++.+-..
T Consensus 34 Laa~il~~al~l~~w~-----~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~ 108 (249)
T d1o9ga_ 34 LATEIFQRALARLPGD-----GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARE 108 (249)
T ss_dssp HHHHHHHHHHHTSSCC-----SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHHhhhhcCC-----CCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHh
Confidence 3344555555433333 36789999999999988766421
Q ss_pred -----CCEEEEEeCCHHHHHHH---HHHHHHcCCCCCeEEEEcCCCCCC-----CCCCccceEEccccccCc----C---
Q 017428 181 -----GAKCQGITLSPVQAQRA---NALAAARGLADKVSFQVGDALQQP-----FPDGQFDLVWSMESGEHM----P--- 240 (371)
Q Consensus 181 -----~~~v~gvD~s~~~~~~a---~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~~fD~v~~~~~l~~~----~--- 240 (371)
...++|.|+++.+++.| +++++..|+...+.+.+.|+.+.. .+....++|+++--...- .
T Consensus 109 ~~~~~~~~i~G~D~d~~ai~~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~ 188 (249)
T d1o9ga_ 109 LERREQSERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVP 188 (249)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCC
T ss_pred ccccccCCccccccCHHHHHHHHHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccch
Confidence 02467899999999888 468888899889999999987642 123557899986433221 1
Q ss_pred --CHHHHHHHHHHhcCCCcEEEEEe
Q 017428 241 --DKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 241 --~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
....+...+.+++.....++++.
T Consensus 189 ~~~~~~~~~~l~~~~p~~s~~~it~ 213 (249)
T d1o9ga_ 189 GQPVAGLLRSLASALPAHAVIAVTD 213 (249)
T ss_dssp HHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred HHHHHHHHHHHHccCCCCcEEEEeC
Confidence 13456666777786555555543
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=94.38 E-value=0.15 Score=39.65 Aligned_cols=93 Identities=16% Similarity=0.190 Sum_probs=61.1
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-------CCCCccc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-------FPDGQFD 228 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-------~~~~~fD 228 (371)
|+.+||=.|||. |..+..+++..+ ..|+++|.++.-.+.+++. |. ..++...-.... ...+.+|
T Consensus 28 ~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~l----Ga---~~~i~~~~~~~~~~~~~~~~~~~g~D 100 (176)
T d2fzwa2 28 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF----GA---TECINPQDFSKPIQEVLIEMTDGGVD 100 (176)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH----TC---SEEECGGGCSSCHHHHHHHHTTSCBS
T ss_pred CCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHh----CC---cEEEeCCchhhHHHHHHHHHcCCCCc
Confidence 489999999874 456667777775 6899999999888887763 32 222222111111 1235689
Q ss_pred eEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 229 LVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 229 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+|+-.-. ....++.+..++++||.+++..
T Consensus 101 ~vid~~G------~~~~~~~~~~~~~~g~~~~~v~ 129 (176)
T d2fzwa2 101 YSFECIG------NVKVMRAALEACHKGWGVSVVV 129 (176)
T ss_dssp EEEECSC------CHHHHHHHHHTBCTTTCEEEEC
T ss_pred EeeecCC------CHHHHHHHHHhhcCCceeEEEE
Confidence 8875421 2357788999999998877654
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=94.18 E-value=0.16 Score=44.93 Aligned_cols=44 Identities=18% Similarity=0.314 Sum_probs=35.6
Q ss_pred CCEEEEECCCcChHHHHHHHHc--------CCEEEEEeCCHHHHHHHHHHHH
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF--------GAKCQGITLSPVQAQRANALAA 202 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~--------~~~v~gvD~s~~~~~~a~~~~~ 202 (371)
...|+|+|+|+|.++..+.+.+ ...++.++.|+...+.-++.++
T Consensus 80 ~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~ 131 (365)
T d1zkda1 80 TLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLA 131 (365)
T ss_dssp SEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHST
T ss_pred cceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhc
Confidence 5789999999999999887654 2468999999988777666654
|
| >d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Leucine carboxy methyltransferase Ppm1 domain: Leucine carboxy methyltransferase Ppm1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.09 E-value=1.2 Score=38.34 Aligned_cols=156 Identities=14% Similarity=0.061 Sum_probs=87.3
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcC--------------------CCCCeEEEEcCC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARG--------------------LADKVSFQVGDA 217 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~--------------------~~~~v~~~~~d~ 217 (371)
...|+-+|||.-.....+.+.+ +..++=||. |+.++.=++.+.+.. ..++...+..|+
T Consensus 97 ~~QVV~LGaG~DTr~~Rl~~~~~~~~~~EvD~-p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~~s~~y~lv~~DL 175 (328)
T d1rjda_ 97 KVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDL 175 (328)
T ss_dssp SEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCT
T ss_pred CcEEEEeCCccchHHHHhhccCCCcEEEECCc-HHHHHHHHHHHHhchhhhhhccccccccccccccCCCCCeEEEecCC
Confidence 5689999999988887877665 445555666 444443333332210 124678888898
Q ss_pred CCCC---------CCCCccceEEccccccCcCC--HHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHH
Q 017428 218 LQQP---------FPDGQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKK 286 (371)
Q Consensus 218 ~~~~---------~~~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (371)
.+.. +..+..-++++=.++.+++. ...+++.+.+.. |+|.+++.+...+... ...+......-+.+
T Consensus 176 ~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f-~~~~~i~YE~i~~~~p--~D~FG~~M~~nl~~ 252 (328)
T d1rjda_ 176 NDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGGSQP--NDRFGAIMQSNLKE 252 (328)
T ss_dssp TCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCCCST--TCCHHHHHHHHHHH
T ss_pred CCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhC-CCceEEEeccCCCCCC--CChHHHHHHHHHHH
Confidence 8742 11222346777778888853 467888887766 4577777775432211 12232222222221
Q ss_pred --HhhccCCCCCCCHHHHHHHHHhCCCceEEEEecC
Q 017428 287 --ICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWS 320 (371)
Q Consensus 287 --~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~ 320 (371)
.........+.+.+...+-+ .|+..+...+..
T Consensus 253 ~r~~~l~~~~~~~t~~~~~~r~--~~~~~~~~~dm~ 286 (328)
T d1rjda_ 253 SRNLEMPTLMTYNSKEKYASRW--SAAPNVIVNDMW 286 (328)
T ss_dssp HHCCCCTTTTTTCSHHHHHGGG--TTSSEEEEEEHH
T ss_pred hcCCCCCccccCCCHHHHHHHH--hcCCccchhhHH
Confidence 11112223345777766655 477776665543
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=92.97 E-value=0.17 Score=38.89 Aligned_cols=87 Identities=15% Similarity=0.143 Sum_probs=54.7
Q ss_pred CEEEEECCCc--ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 160 KNVVDVGCGI--GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 160 ~~VLDlG~Gt--G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
++|.=||+|. +.++..+.+. +.+|++.|.+++.++.+++ .+. +.....+.+. -...|+|+..--
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~-g~~V~~~d~~~~~~~~a~~----~~~---~~~~~~~~~~----~~~~DiIilavp-- 66 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRR-GHYLIGVSRQQSTCEKAVE----RQL---VDEAGQDLSL----LQTAKIIFLCTP-- 66 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHHH----TTS---CSEEESCGGG----GTTCSEEEECSC--
T ss_pred CEEEEEeecHHHHHHHHHHHHC-CCEEEEEECCchHHHHHHH----hhc---cceeeeeccc----ccccccccccCc--
Confidence 4677788873 3345555544 8899999999988777655 232 2122222222 145798886432
Q ss_pred CcCCHHHHHHHHHHhcCCCcEEEE
Q 017428 238 HMPDKSKFVSELARVTAPAGTIII 261 (371)
Q Consensus 238 ~~~~~~~~l~~~~~~LkpgG~l~i 261 (371)
......+++++...|+++-.++-
T Consensus 67 -~~~~~~vl~~l~~~l~~~~iv~~ 89 (165)
T d2f1ka2 67 -IQLILPTLEKLIPHLSPTAIVTD 89 (165)
T ss_dssp -HHHHHHHHHHHGGGSCTTCEEEE
T ss_pred -Hhhhhhhhhhhhhhcccccceee
Confidence 12346788999998888886654
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=92.37 E-value=0.25 Score=36.45 Aligned_cols=86 Identities=20% Similarity=0.140 Sum_probs=55.7
Q ss_pred CEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----CCCCccceEEc
Q 017428 160 KNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----FPDGQFDLVWS 232 (371)
Q Consensus 160 ~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~v~~ 232 (371)
++|+=+|+ |.++..+++.+ +..|+.+|.+++.++.+++.. ++.++.+|..+.. ..-...|.+++
T Consensus 1 M~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~-------~~~vi~Gd~~~~~~l~~~~i~~a~~vv~ 71 (132)
T d1lssa_ 1 MYIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI-------DALVINGDCTKIKTLEDAGIEDADMYIA 71 (132)
T ss_dssp CEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-------SSEEEESCTTSHHHHHHTTTTTCSEEEE
T ss_pred CEEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh-------hhhhccCcccchhhhhhcChhhhhhhcc
Confidence 35666766 67777777655 789999999999888765531 4678999988752 22355787776
Q ss_pred cccccCcCCH--HHHHHHHHHhcCCCcEE
Q 017428 233 MESGEHMPDK--SKFVSELARVTAPAGTI 259 (371)
Q Consensus 233 ~~~l~~~~~~--~~~l~~~~~~LkpgG~l 259 (371)
.. .+. ..++....+.+.+.-.+
T Consensus 72 ~t-----~~d~~N~~~~~~~k~~~~~~iI 95 (132)
T d1lssa_ 72 VT-----GKEEVNLMSSLLAKSYGINKTI 95 (132)
T ss_dssp CC-----SCHHHHHHHHHHHHHTTCCCEE
T ss_pred cC-----CcHHHHHHHHHHHHHcCCceEE
Confidence 31 222 23344455667776443
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.17 E-value=0.21 Score=41.60 Aligned_cols=84 Identities=18% Similarity=0.128 Sum_probs=60.6
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----------CCCC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----------FPDG 225 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~~~~ 225 (371)
++.+|=-|++.| .+..+++.+ |++|+.+|.+++.++.+.+.+....-+.++.++..|+.+.. -.-+
T Consensus 3 GKvalITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G 81 (254)
T d2gdza1 3 GKVALVTGAAQG-IGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG 81 (254)
T ss_dssp TCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence 677888886654 555555555 89999999999988887777655433357889999998742 0126
Q ss_pred ccceEEccccccCcCCHH
Q 017428 226 QFDLVWSMESGEHMPDKS 243 (371)
Q Consensus 226 ~fD~v~~~~~l~~~~~~~ 243 (371)
..|+++.+.......+++
T Consensus 82 ~iDilVnnAg~~~~~~~~ 99 (254)
T d2gdza1 82 RLDILVNNAGVNNEKNWE 99 (254)
T ss_dssp CCCEEEECCCCCCSSSHH
T ss_pred CcCeecccccccccccch
Confidence 799999887777666654
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=91.68 E-value=0.53 Score=36.37 Aligned_cols=93 Identities=17% Similarity=0.178 Sum_probs=58.5
Q ss_pred CCCEEEEECCCcCh-HHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE-cCCCCCC------CCCCccc
Q 017428 158 RPKNVVDVGCGIGG-SSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQV-GDALQQP------FPDGQFD 228 (371)
Q Consensus 158 ~~~~VLDlG~GtG~-~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~~------~~~~~fD 228 (371)
++.+||=+|+|.+. .+..+++.. ...|+++|.++.-.+.+++. |. ...+. .+..+.. ...+.+|
T Consensus 28 ~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~----Ga---~~~i~~~~~~~~~~~~~~~~~~~G~D 100 (176)
T d2jhfa2 28 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV----GA---TECVNPQDYKKPIQEVLTEMSNGGVD 100 (176)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TC---SEEECGGGCSSCHHHHHHHHTTSCBS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHh----CC---eeEEecCCchhHHHHHHHHHhcCCCC
Confidence 48999999997544 555666666 47999999999998888763 32 22221 1222210 1235789
Q ss_pred eEEccccccCcCCHHHHHHHHHHhcCCC-cEEEEEe
Q 017428 229 LVWSMESGEHMPDKSKFVSELARVTAPA-GTIIIVT 263 (371)
Q Consensus 229 ~v~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~i~~ 263 (371)
+|+-.... ...++.+...+++| |.+++..
T Consensus 101 ~vid~~G~------~~~~~~a~~~~~~~~g~~~~~~ 130 (176)
T d2jhfa2 101 FSFEVIGR------LDTMVTALSCCQEAYGVSVIVG 130 (176)
T ss_dssp EEEECSCC------HHHHHHHHHHBCTTTCEEEECS
T ss_pred EEEecCCc------hhHHHHHHHHHhcCCcceEEec
Confidence 88764322 34567777788887 5555544
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=91.61 E-value=0.047 Score=42.66 Aligned_cols=94 Identities=17% Similarity=0.166 Sum_probs=62.7
Q ss_pred CCEEEEECC--CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC-CC-C-CCCCCccceEEcc
Q 017428 159 PKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA-LQ-Q-PFPDGQFDLVWSM 233 (371)
Q Consensus 159 ~~~VLDlG~--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~-~-~~~~~~fD~v~~~ 233 (371)
+.+||=-|+ |-|..+..+++..+++|+++.-+++..+.+++ .|.. .+ +...|. .+ . ....+.+|+|+-.
T Consensus 24 ~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~----lGad-~v-i~~~~~~~~~~~~~~~~gvd~vid~ 97 (167)
T d1tt7a2 24 KGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQ----LGAS-EV-ISREDVYDGTLKALSKQQWQGAVDP 97 (167)
T ss_dssp GCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHH----HTCS-EE-EEHHHHCSSCCCSSCCCCEEEEEES
T ss_pred CCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHh----hccc-ce-EeccchhchhhhcccCCCceEEEec
Confidence 557887764 45778889999889999999999888777765 3432 12 111111 11 1 1234678987643
Q ss_pred ccccCcCCHHHHHHHHHHhcCCCcEEEEEecc
Q 017428 234 ESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 234 ~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
+. ...+.+..+.|+|+|+++++-..
T Consensus 98 -----vg--g~~~~~~~~~l~~~G~iv~~G~~ 122 (167)
T d1tt7a2 98 -----VG--GKQLASLLSKIQYGGSVAVSGLT 122 (167)
T ss_dssp -----CC--THHHHHHHTTEEEEEEEEECCCS
T ss_pred -----Cc--HHHHHHHHHHhccCceEEEeecc
Confidence 11 24678999999999999987543
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=91.57 E-value=0.33 Score=37.34 Aligned_cols=90 Identities=20% Similarity=0.223 Sum_probs=56.2
Q ss_pred EEEEECCCc--ChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 161 NVVDVGCGI--GGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 161 ~VLDlG~Gt--G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
+|+=||||. |.++..+.+.. ..+|+|+|.+++.++.+++. +. +.....+.... .....|+|+..--.
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~----~~---~~~~~~~~~~~--~~~~~dlIila~p~- 72 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----GI---IDEGTTSIAKV--EDFSPDFVMLSSPV- 72 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----TS---CSEEESCGGGG--GGTCCSEEEECSCH-
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh----hc---chhhhhhhhhh--hccccccccccCCc-
Confidence 578899985 33455555542 35899999999999888763 22 22222222221 23457888865322
Q ss_pred CcCCHHHHHHHHHHhcCCCcEEEEE
Q 017428 238 HMPDKSKFVSELARVTAPAGTIIIV 262 (371)
Q Consensus 238 ~~~~~~~~l~~~~~~LkpgG~l~i~ 262 (371)
.....++.++...++++..+.-+
T Consensus 73 --~~~~~vl~~l~~~~~~~~ii~d~ 95 (171)
T d2g5ca2 73 --RTFREIAKKLSYILSEDATVTDQ 95 (171)
T ss_dssp --HHHHHHHHHHHHHSCTTCEEEEC
T ss_pred --hhhhhhhhhhhcccccccccccc
Confidence 23467888999999988665543
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=91.38 E-value=0.54 Score=36.22 Aligned_cols=91 Identities=12% Similarity=0.164 Sum_probs=54.8
Q ss_pred CCCEEEEECCCcChH-HHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-------CCCCccc
Q 017428 158 RPKNVVDVGCGIGGS-SRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-------FPDGQFD 228 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~-~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-------~~~~~fD 228 (371)
++.+||=+|+|.+.. +..+++.. ...|+++|.+++-++.+++ .|. ..++...-.+.. .....+|
T Consensus 28 ~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~----~GA---d~~in~~~~~~~~~~~~~~~~~~G~d 100 (175)
T d1cdoa2 28 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV----FGA---TDFVNPNDHSEPISQVLSKMTNGGVD 100 (175)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTC---CEEECGGGCSSCHHHHHHHHHTSCBS
T ss_pred CCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHH----cCC---cEEEcCCCcchhHHHHHHhhccCCcc
Confidence 489999999998554 44455555 5689999999998888776 342 222321111111 1134688
Q ss_pred eEEccccccCcCCHHHHHHHHHHhcCCCcEEEE
Q 017428 229 LVWSMESGEHMPDKSKFVSELARVTAPAGTIII 261 (371)
Q Consensus 229 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i 261 (371)
+|+-.-. . ...+..+...+++||.+++
T Consensus 101 ~vid~~G-----~-~~~~~~a~~~~~~g~~~~~ 127 (175)
T d1cdoa2 101 FSLECVG-----N-VGVMRNALESCLKGWGVSV 127 (175)
T ss_dssp EEEECSC-----C-HHHHHHHHHTBCTTTCEEE
T ss_pred eeeeecC-----C-HHHHHHHHHHhhCCCccee
Confidence 8864322 2 3456677777766644443
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.24 E-value=0.72 Score=37.86 Aligned_cols=78 Identities=19% Similarity=0.111 Sum_probs=57.3
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----------CCCC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----------FPDG 225 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~~~~ 225 (371)
++.||=-|++.|. +..++..+ |++|+.+|.+++.++...+.+...+ .++.++.+|+.+.. -..+
T Consensus 7 Gkv~lITGas~GI-G~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dvs~~~~v~~~~~~i~~~~g 83 (244)
T d1yb1a_ 7 GEIVLITGAGHGI-GRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVKAEIG 83 (244)
T ss_dssp TCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CCEEEEeCCCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHHcC
Confidence 6777777766654 44444444 8999999999999988888887765 57999999998852 1246
Q ss_pred ccceEEccccccCc
Q 017428 226 QFDLVWSMESGEHM 239 (371)
Q Consensus 226 ~fD~v~~~~~l~~~ 239 (371)
..|+++.+..+...
T Consensus 84 ~idilinnag~~~~ 97 (244)
T d1yb1a_ 84 DVSILVNNAGVVYT 97 (244)
T ss_dssp CCSEEEECCCCCCC
T ss_pred CCceeEeecccccc
Confidence 68988877665544
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.22 E-value=0.35 Score=40.58 Aligned_cols=103 Identities=17% Similarity=0.139 Sum_probs=71.4
Q ss_pred CCEEEEECCCcChHHHHHHH----HcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------C--CC
Q 017428 159 PKNVVDVGCGIGGSSRYLAK----KFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------F--PD 224 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~----~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~--~~ 224 (371)
+++|.=|-.|++..+..+++ ..+++|+.++.+++.++.+.+.++..+ .++.++.+|+.+.. . ..
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dvs~~~sv~~~~~~~~~~~ 79 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG--LSPRFHQLDIDDLQSIRALRDFLRKEY 79 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEEecCCHHHHHHHHHHHHHhc
Confidence 56775554455555544444 336899999999999999988888776 47899999998752 0 12
Q ss_pred CccceEEccccccCcC---C-----H-----------HHHHHHHHHhcCCCcEEEEEe
Q 017428 225 GQFDLVWSMESGEHMP---D-----K-----------SKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 225 ~~fD~v~~~~~l~~~~---~-----~-----------~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+..|+++.+..+.+.. + + -.+.+.+...|+++|.++.+.
T Consensus 80 g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnis 137 (275)
T d1wmaa1 80 GGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS 137 (275)
T ss_dssp SSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred CCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 6799999876654321 1 1 135666677888999987765
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=91.22 E-value=0.095 Score=41.60 Aligned_cols=99 Identities=12% Similarity=0.100 Sum_probs=58.9
Q ss_pred CCCEEEEECCC---cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------CCCCc
Q 017428 158 RPKNVVDVGCG---IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------FPDGQ 226 (371)
Q Consensus 158 ~~~~VLDlG~G---tG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~~ 226 (371)
++.+||=+.+| .|..++.+++..+++|+++--++...+...+.++..|...-+.....|..+.. ...+.
T Consensus 28 ~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v~~~~~~~g~~ 107 (189)
T d1gu7a2 28 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGE 107 (189)
T ss_dssp TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHHTCC
T ss_pred CCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHHHHHHhhccCC
Confidence 47788887333 46678888888899999886555555555555555664311111111221110 01345
Q ss_pred cceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 227 FDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 227 fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+|+|+-. +. ...+..+.+.|+|+|+++.+-
T Consensus 108 vdvv~D~-----vg--~~~~~~~~~~l~~~G~~v~~G 137 (189)
T d1gu7a2 108 AKLALNC-----VG--GKSSTGIARKLNNNGLMLTYG 137 (189)
T ss_dssp EEEEEES-----SC--HHHHHHHHHTSCTTCEEEECC
T ss_pred ceEEEEC-----CC--cchhhhhhhhhcCCcEEEEEC
Confidence 8887732 22 235678889999999998753
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.77 E-value=0.95 Score=35.30 Aligned_cols=90 Identities=12% Similarity=0.127 Sum_probs=58.0
Q ss_pred CCEEEEEC--CCcChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-------CCCCccc
Q 017428 159 PKNVVDVG--CGIGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-------FPDGQFD 228 (371)
Q Consensus 159 ~~~VLDlG--~GtG~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-------~~~~~fD 228 (371)
+.+||=.| .|.|..++.+++..++ .|++++.+++......+ ..+. -.++ |..+.. ..++.+|
T Consensus 31 ~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~---~~ga---d~vi--~~~~~~~~~~~~~~~~~GvD 102 (187)
T d1vj1a2 31 NQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTS---ELGF---DAAV--NYKTGNVAEQLREACPGGVD 102 (187)
T ss_dssp CCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHH---HSCC---SEEE--ETTSSCHHHHHHHHCTTCEE
T ss_pred CCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhh---cccc---eEEe--eccchhHHHHHHHHhccCce
Confidence 37799877 4678999999998876 57777877765544332 2332 1222 332221 1235699
Q ss_pred eEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 229 LVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 229 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+|+-.- . ...+....++|+|+|+++.+-
T Consensus 103 vv~D~v-----G--g~~~~~~~~~l~~~G~iv~~G 130 (187)
T d1vj1a2 103 VYFDNV-----G--GDISNTVISQMNENSHIILCG 130 (187)
T ss_dssp EEEESS-----C--HHHHHHHHTTEEEEEEEEEC-
T ss_pred EEEecC-----C--chhHHHHhhhccccccEEEec
Confidence 987432 1 346889999999999998754
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=89.40 E-value=0.88 Score=38.50 Aligned_cols=66 Identities=14% Similarity=0.052 Sum_probs=48.5
Q ss_pred CEEEEECCCcChHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC-CCccceEEcc
Q 017428 160 KNVVDVGCGIGGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP-DGQFDLVWSM 233 (371)
Q Consensus 160 ~~VLDlG~GtG~~~~~l~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~v~~~ 233 (371)
++|||+=||.|.+...+.+. |.+ +.++|+++...+..+.++ + -.+...|+.++... -...|+++..
T Consensus 1 mk~~~lF~G~Gg~~~gl~~a-G~~~~~a~e~d~~a~~~~~~N~-----~--~~~~~~Di~~~~~~~~~~~dll~~g 68 (324)
T d1dcta_ 1 MNLISLFSGAGGLDLGFQKA-GFRIICANEYDKSIWKTYESNH-----S--AKLIKGDISKISSDEFPKCDGIIGG 68 (324)
T ss_dssp CEEEEESCSSCHHHHHHHHH-TCEEEEEEECCHHHHHHHHHHC-----C--SEEEESCTTTSCGGGSCCCSEEEEC
T ss_pred CeEEEeCcCcCHHHHHHHHC-CCEEEEEEeCCHHHHHHHHHHC-----C--CCCccCChhhCCHhHcccccEEeec
Confidence 47999999999998888765 655 458999998887766653 2 35678999887421 2458988864
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=89.22 E-value=1.7 Score=35.71 Aligned_cols=104 Identities=20% Similarity=0.088 Sum_probs=71.1
Q ss_pred CCCEEEEECCCcChHHHHHHHHc---CCEEEEE-eCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----------CC
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF---GAKCQGI-TLSPVQAQRANALAAARGLADKVSFQVGDALQQP----------FP 223 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~---~~~v~gv-D~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~~ 223 (371)
.++.||=.| |++..+..+++.+ |++|+.. +-+...++.+.+.+...+ .++.++..|+.+.. ..
T Consensus 5 ~GK~alITG-as~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g--~~~~~~~~D~~~~~~v~~~~~~~~~~ 81 (259)
T d1ja9a_ 5 AGKVALTTG-AGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLG--AQGVAIQADISKPSEVVALFDKAVSH 81 (259)
T ss_dssp TTCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeC-CCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcC--CCceEecCCCCCHHHHHHHHHHHHHH
Confidence 377888666 5566666666555 7888865 567777788888887776 47999999998742 12
Q ss_pred CCccceEEccccccCcCCH-------------------HHHHHHHHHhcCCCcEEEEEec
Q 017428 224 DGQFDLVWSMESGEHMPDK-------------------SKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 224 ~~~fD~v~~~~~l~~~~~~-------------------~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
.+..|+++.+....+..+. -.+.+.+...++.+|.+++...
T Consensus 82 ~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~s 141 (259)
T d1ja9a_ 82 FGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSS 141 (259)
T ss_dssp HSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred cCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCccccccc
Confidence 3578999887766554321 1456666777777877776643
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=89.16 E-value=0.65 Score=33.95 Aligned_cols=87 Identities=10% Similarity=0.119 Sum_probs=52.5
Q ss_pred EEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC----CCCccceEEccc
Q 017428 162 VVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF----PDGQFDLVWSME 234 (371)
Q Consensus 162 VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~fD~v~~~~ 234 (371)
++=+|+ |.++..+++.+ +..|+.+|.+++.++.++. .....+.+|..+... .-...|.|++..
T Consensus 3 ~iIiG~--G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~--------~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~ 72 (134)
T d2hmva1 3 FAVIGL--GRFGGSIVKELHRMGHEVLAVDINEEKVNAYAS--------YATHAVIANATEENELLSLGIRNFEYVIVAI 72 (134)
T ss_dssp EEEECC--SHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTT--------TCSEEEECCTTCTTHHHHHTGGGCSEEEECC
T ss_pred EEEECC--CHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHH--------hCCcceeeecccchhhhccCCccccEEEEEc
Confidence 444444 67777777665 7899999999998887643 235677889877531 124467665432
Q ss_pred cccCcCC-HHHHHHHHHHhcCCCcEEEEE
Q 017428 235 SGEHMPD-KSKFVSELARVTAPAGTIIIV 262 (371)
Q Consensus 235 ~l~~~~~-~~~~l~~~~~~LkpgG~l~i~ 262 (371)
. .+ ....+-.+.+.+.|...++..
T Consensus 73 ~----~~~~~~~~~~~~~~~~~~~~iiar 97 (134)
T d2hmva1 73 G----ANIQASTLTTLLLKELDIPNIWVK 97 (134)
T ss_dssp C----SCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred C----chHHhHHHHHHHHHHcCCCcEEee
Confidence 1 22 233344444445566666553
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.69 E-value=0.19 Score=43.39 Aligned_cols=71 Identities=15% Similarity=0.201 Sum_probs=50.8
Q ss_pred CCEEEEECCCcChHHHHHHHHcCC--E-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---CCCCccceEEc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGA--K-CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---FPDGQFDLVWS 232 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~--~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~v~~ 232 (371)
+.+|+|+-||.|.+...+... |. + +.++|+++..++..+.++ ++..++..|+.+.. ++...+|+++.
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~a-G~~~~~~~a~E~~~~a~~~~~~n~------~~~~~~~~di~~~~~~~~~~~~~Dll~g 74 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRES-CIPAQVVAAIDVNTVANEVYKYNF------PHTQLLAKTIEGITLEEFDRLSFDMILM 74 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHH-TCSEEEEEEECCCHHHHHHHHHHC------TTSCEECSCGGGCCHHHHHHHCCSEEEE
T ss_pred CCEEEEcCcCccHHHHHHHHc-CCCCeEEEEEECCHHHHHHHHHHC------CCCCcccCchhhCCHhHcCCCCccEEEe
Confidence 578999999999998887665 42 3 678999998888766653 34567778887764 22346898887
Q ss_pred cccc
Q 017428 233 MESG 236 (371)
Q Consensus 233 ~~~l 236 (371)
..-.
T Consensus 75 gpPC 78 (343)
T d1g55a_ 75 SPPC 78 (343)
T ss_dssp CCC-
T ss_pred eccc
Confidence 5433
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=88.58 E-value=0.47 Score=37.01 Aligned_cols=92 Identities=14% Similarity=0.226 Sum_probs=60.7
Q ss_pred CCEEEEECC--CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC--CCCCCCccceEEccc
Q 017428 159 PKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ--QPFPDGQFDLVWSME 234 (371)
Q Consensus 159 ~~~VLDlG~--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~fD~v~~~~ 234 (371)
+.+||=.|. |.|..++.+++..|++|+++.-+++..+.+++. |. -.++.-+-.+ ..+....+|.|+-
T Consensus 32 ~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~l----Ga---d~vi~~~~~~~~~~l~~~~~~~vvD-- 102 (177)
T d1o89a2 32 DGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSL----GA---SRVLPRDEFAESRPLEKQVWAGAID-- 102 (177)
T ss_dssp GCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHH----TE---EEEEEGGGSSSCCSSCCCCEEEEEE--
T ss_pred CCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHhh----cc---ccccccccHHHHHHHHhhcCCeeEE--
Confidence 457886653 356688889988899999999999888777653 32 1222222111 1234466787642
Q ss_pred cccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 235 SGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 235 ~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
.+. ...+.+..+.|+++|+++.+-.
T Consensus 103 ---~Vg--g~~~~~~l~~l~~~Griv~~G~ 127 (177)
T d1o89a2 103 ---TVG--DKVLAKVLAQMNYGGCVAACGL 127 (177)
T ss_dssp ---SSC--HHHHHHHHHTEEEEEEEEECCC
T ss_pred ---Ecc--hHHHHHHHHHhccccceEeecc
Confidence 222 3468899999999999999753
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=88.49 E-value=0.28 Score=41.90 Aligned_cols=76 Identities=18% Similarity=0.127 Sum_probs=47.8
Q ss_pred CEEEEECCCcChHHHHHHHHc---CCEEEEEe-CCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CCCCccceE
Q 017428 160 KNVVDVGCGIGGSSRYLAKKF---GAKCQGIT-LSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FPDGQFDLV 230 (371)
Q Consensus 160 ~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD-~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~~fD~v 230 (371)
.+||=.| |+|..+..+.+.+ +.+|+++| ++............. .++++++.+|+.+.. +...++|.|
T Consensus 1 ~KILVTG-atGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~~~~~~~~~---~~~~~~i~~Di~~~~~l~~~~~~~~~d~V 76 (338)
T d1orra_ 1 AKLLITG-GCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSS---LGNFEFVHGDIRNKNDVTRLITKYMPDSC 76 (338)
T ss_dssp CEEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHT---TCCCEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred CEEEEEC-CCcHHHHHHHHHHHHCcCEEEEEECCCcccchhHHHHhhc---cCCcEEEEcccCCHHHHHHHHHhcCCceE
Confidence 3688555 7899888887766 78999998 333222111111211 258999999998742 233457998
Q ss_pred EccccccCc
Q 017428 231 WSMESGEHM 239 (371)
Q Consensus 231 ~~~~~l~~~ 239 (371)
+......+.
T Consensus 77 ih~aa~~~~ 85 (338)
T d1orra_ 77 FHLAGQVAM 85 (338)
T ss_dssp EECCCCCCH
T ss_pred Eeecccccc
Confidence 876655443
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=87.04 E-value=1.9 Score=35.33 Aligned_cols=77 Identities=14% Similarity=0.042 Sum_probs=53.2
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHH-HHcCCCCCeEEEEcCCCCCC-----C-----CC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALA-AARGLADKVSFQVGDALQQP-----F-----PD 224 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~~-----~-----~~ 224 (371)
++.+|=-|++.| .+..+++.+ |++|+.+|.+++.++.+.+.+ +..+ .++.++..|+.+.. + .-
T Consensus 5 gK~~lITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 81 (251)
T d1vl8a_ 5 GRVALVTGGSRG-LGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYG--VETMAFRCDVSNYEEVKKLLEAVKEKF 81 (251)
T ss_dssp TCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHC--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 678888887655 444555444 899999999988877666554 3334 46888999998742 0 12
Q ss_pred CccceEEccccccC
Q 017428 225 GQFDLVWSMESGEH 238 (371)
Q Consensus 225 ~~fD~v~~~~~l~~ 238 (371)
+..|+++.+..+..
T Consensus 82 g~iDiLVnnAG~~~ 95 (251)
T d1vl8a_ 82 GKLDTVVNAAGINR 95 (251)
T ss_dssp SCCCEEEECCCCCC
T ss_pred CCCCEEEECCCCCC
Confidence 57999987655433
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=86.86 E-value=1.4 Score=36.30 Aligned_cols=77 Identities=21% Similarity=0.168 Sum_probs=55.1
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----------CCCC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----------FPDG 225 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~~~~ 225 (371)
++.+|=-|++.|. +..+++.+ |++|+.+|.+++.++.+.+.+...+...++.++.+|+.+.. -.-+
T Consensus 4 gK~alITGas~GI-G~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~G 82 (258)
T d1iy8a_ 4 DRVVLITGGGSGL-GRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERFG 82 (258)
T ss_dssp TCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHhC
Confidence 6778888876554 33444433 89999999999999888877766654457889999998742 0126
Q ss_pred ccceEEccccc
Q 017428 226 QFDLVWSMESG 236 (371)
Q Consensus 226 ~fD~v~~~~~l 236 (371)
..|+++.+..+
T Consensus 83 ~iDiLVnnAG~ 93 (258)
T d1iy8a_ 83 RIDGFFNNAGI 93 (258)
T ss_dssp CCSEEEECCCC
T ss_pred CCCEEEECCcc
Confidence 78998876543
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=86.75 E-value=0.71 Score=33.59 Aligned_cols=84 Identities=13% Similarity=0.047 Sum_probs=57.1
Q ss_pred CCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----CCCCccceEEccccccCcCC
Q 017428 167 CGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----FPDGQFDLVWSMESGEHMPD 241 (371)
Q Consensus 167 ~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~v~~~~~l~~~~~ 241 (371)
||.|..+..+++.+ +..++.+|.++...+..+. .++.++.+|..+.. ..-+..+.+++.. ++
T Consensus 6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~--------~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~-----~~ 72 (129)
T d2fy8a1 6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLR--------SGANFVHGDPTRVSDLEKANVRGARAVIVNL-----ES 72 (129)
T ss_dssp ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHH--------TTCEEEESCTTSHHHHHHTTCTTCSEEEECC-----SS
T ss_pred ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHh--------cCccccccccCCHHHHHHhhhhcCcEEEEec-----cc
Confidence 56788999999888 6678999999988776643 35788999987742 2234567776532 22
Q ss_pred H--HHHHHHHHHhcCCCcEEEEEe
Q 017428 242 K--SKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 242 ~--~~~l~~~~~~LkpgG~l~i~~ 263 (371)
. ...+-...+.+.|...++...
T Consensus 73 d~~n~~~~~~~r~~~~~~~iia~~ 96 (129)
T d2fy8a1 73 DSETIHCILGIRKIDESVRIIAEA 96 (129)
T ss_dssp HHHHHHHHHHHHHHCSSSCEEEEC
T ss_pred hhhhHHHHHHHHHHCCCceEEEEE
Confidence 2 233445566788887776654
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=86.43 E-value=1.3 Score=36.49 Aligned_cols=75 Identities=16% Similarity=0.186 Sum_probs=54.7
Q ss_pred CCCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CC
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PD 224 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~ 224 (371)
+++.+|=-|++.| .+..+++.+ |++|+.+|.+++.++.+.+.++..+ .++.++..|+.+.. + .-
T Consensus 4 ~gK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (260)
T d1zema1 4 NGKVCLVTGAGGN-IGLATALRLAEEGTAIALLDMNREALEKAEASVREKG--VEARSYVCDVTSEEAVIGTVDSVVRDF 80 (260)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT--SCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 3778887786554 444555444 8999999999999998888887765 47889999998742 0 12
Q ss_pred CccceEEcccc
Q 017428 225 GQFDLVWSMES 235 (371)
Q Consensus 225 ~~fD~v~~~~~ 235 (371)
+..|+++.+..
T Consensus 81 g~iDilVnnaG 91 (260)
T d1zema1 81 GKIDFLFNNAG 91 (260)
T ss_dssp SCCCEEEECCC
T ss_pred CCCCeehhhhc
Confidence 67898886543
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=86.31 E-value=1.1 Score=39.71 Aligned_cols=50 Identities=18% Similarity=0.084 Sum_probs=42.5
Q ss_pred CCCCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCC
Q 017428 157 KRPKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGL 206 (371)
Q Consensus 157 ~~~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~ 206 (371)
.++..++|||+-.|..+..++... ..+|+++|+++...+..+++++.+..
T Consensus 211 ~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~ 263 (395)
T d2py6a1 211 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTD 263 (395)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTT
T ss_pred CCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhccc
Confidence 457899999999999998887755 35899999999999999998887654
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=86.06 E-value=0.52 Score=41.42 Aligned_cols=74 Identities=18% Similarity=0.100 Sum_probs=46.0
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCC-HHHHH----------------HHHHHHHHcCCCCCeEEEEcCCC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLS-PVQAQ----------------RANALAAARGLADKVSFQVGDAL 218 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s-~~~~~----------------~a~~~~~~~~~~~~v~~~~~d~~ 218 (371)
+++||=.| |+|..+..+++.+ |.+|+++|.- ..... ......... ..+++|+.+|+.
T Consensus 1 g~kILVTG-atGfiG~~lv~~Ll~~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~Dl~ 77 (393)
T d1i24a_ 1 GSRVMVIG-GDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALT--GKSIELYVGDIC 77 (393)
T ss_dssp -CEEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHH--CCCCEEEESCTT
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHCcCEEEEEecCCcccccccccccccccccchHHHHHHHHhhc--CCCcEEEEccCC
Confidence 46888887 6999988888766 7899999932 11111 111111111 247999999998
Q ss_pred CCC-----CCCCccceEEcccc
Q 017428 219 QQP-----FPDGQFDLVWSMES 235 (371)
Q Consensus 219 ~~~-----~~~~~fD~v~~~~~ 235 (371)
+.. +....+|+|+-..+
T Consensus 78 d~~~l~~~~~~~~~d~ViHlAa 99 (393)
T d1i24a_ 78 DFEFLAESFKSFEPDSVVHFGE 99 (393)
T ss_dssp SHHHHHHHHHHHCCSEEEECCS
T ss_pred CHHHHHHHHHhhcchheecccc
Confidence 752 23345798875544
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=85.53 E-value=1.8 Score=35.54 Aligned_cols=78 Identities=14% Similarity=0.165 Sum_probs=56.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----------CC
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----------FP 223 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~~ 223 (371)
++++||=.|+..| .+..+++++ |++|+.++.++..++.+.+.+...+ .++.++..|+.+.. .-
T Consensus 5 ~gK~alITGas~G-IG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~--~~~~~~~~D~s~~~~~~~~~~~~~~~~ 81 (258)
T d1ae1a_ 5 KGTTALVTGGSKG-IGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKG--LNVEGSVCDLLSRTERDKLMQTVAHVF 81 (258)
T ss_dssp TTCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CCceEEEeecCCHHHHHHHHHHHHHHh
Confidence 3788999987644 444454444 8999999999999998888887776 46888999997742 11
Q ss_pred CCccceEEccccccC
Q 017428 224 DGQFDLVWSMESGEH 238 (371)
Q Consensus 224 ~~~fD~v~~~~~l~~ 238 (371)
++..|+++.+..+.+
T Consensus 82 ~g~idilinnag~~~ 96 (258)
T d1ae1a_ 82 DGKLNILVNNAGVVI 96 (258)
T ss_dssp TSCCCEEEECCCCCC
T ss_pred CCCcEEEeccccccc
Confidence 356888886554444
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=85.15 E-value=0.43 Score=39.13 Aligned_cols=52 Identities=6% Similarity=0.110 Sum_probs=32.3
Q ss_pred EEEcCCCCC--CCCCCccceEEcccccc-------CcCC-------HHHHHHHHHHhcCCCcEEEEEe
Q 017428 212 FQVGDALQQ--PFPDGQFDLVWSMESGE-------HMPD-------KSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 212 ~~~~d~~~~--~~~~~~fD~v~~~~~l~-------~~~~-------~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
++.+|..+. .++++++|+|+..=-.. ...+ ....+++++|+|+|||.+++..
T Consensus 7 i~~gDcle~l~~lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~ 74 (256)
T d1g60a_ 7 IHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFN 74 (256)
T ss_dssp EEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEeccHHHHHhhCcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCccccccc
Confidence 456665442 25567777777642211 1111 2457889999999999988653
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.76 E-value=2.8 Score=33.99 Aligned_cols=74 Identities=15% Similarity=0.102 Sum_probs=51.0
Q ss_pred CCCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC------CCCCccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP------FPDGQFD 228 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------~~~~~fD 228 (371)
.+++||=.|++.| .+..+++.+ |++|+.+|.+++.++...+.. +++..++.|+.+.. -.-++.|
T Consensus 6 ~GK~~lITGas~G-IG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~------~~~~~~~~Dv~d~~~v~~~~~~~g~iD 78 (244)
T d1pr9a_ 6 AGRRVLVTGAGKG-IGRGTVQALHATGARVVAVSRTQADLDSLVREC------PGIEPVCVDLGDWEATERALGSVGPVD 78 (244)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS------TTCEEEECCTTCHHHHHHHHTTCCCCC
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhc------CCCeEEEEeCCCHHHHHHHHHHhCCce
Confidence 3788999996654 444555544 899999999988776654432 35788899987742 1236799
Q ss_pred eEEccccccC
Q 017428 229 LVWSMESGEH 238 (371)
Q Consensus 229 ~v~~~~~l~~ 238 (371)
+++.+.....
T Consensus 79 ilVnnAg~~~ 88 (244)
T d1pr9a_ 79 LLVNNAAVAL 88 (244)
T ss_dssp EEEECCCCCC
T ss_pred EEEecccccc
Confidence 9887655544
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=84.29 E-value=1.9 Score=35.49 Aligned_cols=77 Identities=13% Similarity=0.081 Sum_probs=55.9
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------C---CC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------F---PD 224 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~---~~ 224 (371)
++.+|=-|++.| .+..+++.+ |++|+.+|.+++.++.+.+.+...+ .++.++..|+.+.. . -.
T Consensus 8 GK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~~ 84 (259)
T d2ae2a_ 8 GCTALVTGGSRG-IGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKG--FKVEASVCDLSSRSERQELMNTVANHFH 84 (259)
T ss_dssp TCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred CCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CCceEEEeeCCCHHHHHHHHHHHHHHhC
Confidence 778888886654 444555544 8999999999999988888887765 47888999997742 0 12
Q ss_pred CccceEEccccccC
Q 017428 225 GQFDLVWSMESGEH 238 (371)
Q Consensus 225 ~~fD~v~~~~~l~~ 238 (371)
+..|+++.+....+
T Consensus 85 ~~idilvnnAG~~~ 98 (259)
T d2ae2a_ 85 GKLNILVNNAGIVI 98 (259)
T ss_dssp TCCCEEEECCCCCC
T ss_pred CCceEEEECCceec
Confidence 46899887655443
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=84.09 E-value=1.6 Score=36.23 Aligned_cols=78 Identities=21% Similarity=0.229 Sum_probs=55.9
Q ss_pred CCCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEEEcCCCCCC----------CC
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLA-DKVSFQVGDALQQP----------FP 223 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~----------~~ 223 (371)
+++++|=.|++. ..+..+++.+ |++|+.+|.+++.++.+.+.+.+.+.. .++.++.+|+.+.. -.
T Consensus 4 ~gK~alVTGas~-GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 82 (272)
T d1xkqa_ 4 SNKTVIITGSSN-GIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ 82 (272)
T ss_dssp TTCEEEETTCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCc-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 367788777654 4555555544 899999999999999988888776543 46889999998742 01
Q ss_pred CCccceEEccccc
Q 017428 224 DGQFDLVWSMESG 236 (371)
Q Consensus 224 ~~~fD~v~~~~~l 236 (371)
-+..|+++.+...
T Consensus 83 ~g~iDilvnnAG~ 95 (272)
T d1xkqa_ 83 FGKIDVLVNNAGA 95 (272)
T ss_dssp HSCCCEEEECCCC
T ss_pred hCCceEEEeCCcc
Confidence 2578988876433
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=84.07 E-value=0.67 Score=38.41 Aligned_cols=53 Identities=25% Similarity=0.416 Sum_probs=36.2
Q ss_pred EEEEcCCCCC--CCCCCccceEEcccccc-----------CcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 211 SFQVGDALQQ--PFPDGQFDLVWSMESGE-----------HMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 211 ~~~~~d~~~~--~~~~~~fD~v~~~~~l~-----------~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
.|+++|..+. .++++++|+|+..--.. ++......+.+++|+|||||.+++..
T Consensus 6 ~~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~ 71 (279)
T d1eg2a_ 6 VYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFG 71 (279)
T ss_dssp EEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEec
Confidence 3667776553 46678888888743211 11123677899999999999999864
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=83.87 E-value=0.33 Score=41.86 Aligned_cols=72 Identities=15% Similarity=0.135 Sum_probs=47.9
Q ss_pred CEEEEECCCcChHHHHHHHHc---CCEEEEEeC----CHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CCCCcc
Q 017428 160 KNVVDVGCGIGGSSRYLAKKF---GAKCQGITL----SPVQAQRANALAAARGLADKVSFQVGDALQQP-----FPDGQF 227 (371)
Q Consensus 160 ~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~----s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~~f 227 (371)
++||=.| |+|..+..+++.+ +.+|+++|. ........+. .. ..++.++++|+.+.. +....+
T Consensus 1 MKiLItG-~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~~~-~~----~~~~~~~~~Dl~d~~~l~~~~~~~~~ 74 (338)
T d1udca_ 1 MRVLVTG-GSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIER-LG----GKHPTFVEGDIRNEALMTEILHDHAI 74 (338)
T ss_dssp CEEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHH-HH----TSCCEEEECCTTCHHHHHHHHHHTTC
T ss_pred CEEEEEC-CCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHh-hc----CCCCEEEEeecCCHHHHHHHHhccCC
Confidence 4678777 8899998888776 789999984 2222222221 11 147999999998853 234568
Q ss_pred ceEEcccccc
Q 017428 228 DLVWSMESGE 237 (371)
Q Consensus 228 D~v~~~~~l~ 237 (371)
|+|+-..+..
T Consensus 75 d~ViHlAa~~ 84 (338)
T d1udca_ 75 DTVIHFAGLK 84 (338)
T ss_dssp SEEEECCSCC
T ss_pred CEEEECCCcc
Confidence 9988655443
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=83.87 E-value=5.1 Score=32.82 Aligned_cols=102 Identities=18% Similarity=0.125 Sum_probs=67.7
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCC-HHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----------CCC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLS-PVQAQRANALAAARGLADKVSFQVGDALQQP----------FPD 224 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~~~ 224 (371)
+++||=.|++.| .+..+++.+ |++|+.+|.+ ++.++...+.+...+ .++.++..|+.+.. -..
T Consensus 18 gK~~lITGas~G-IG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g--~~~~~~~~D~~~~~~v~~~~~~~~~~~ 94 (272)
T d1g0oa_ 18 GKVALVTGAGRG-IGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNG--SDAACVKANVGVVEDIVRMFEEAVKIF 94 (272)
T ss_dssp TCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhC--CceeeEeCCCCCHHHHHHHHHHHHHHh
Confidence 677777776554 455555544 8999999887 566676666676666 47899999998742 012
Q ss_pred CccceEEccccccCcCC--------HH-----------HHHHHHHHhcCCCcEEEEEe
Q 017428 225 GQFDLVWSMESGEHMPD--------KS-----------KFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 225 ~~fD~v~~~~~l~~~~~--------~~-----------~~l~~~~~~LkpgG~l~i~~ 263 (371)
+..|+++.+........ +. .+.+.+.+.|+.+|.+++..
T Consensus 95 g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~ 152 (272)
T d1g0oa_ 95 GKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMG 152 (272)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred CCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccc
Confidence 56898887655443321 11 34566677888888877765
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=82.97 E-value=1.5 Score=37.17 Aligned_cols=67 Identities=16% Similarity=0.093 Sum_probs=48.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC-CCccceEEcc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP-DGQFDLVWSM 233 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~v~~~ 233 (371)
.+.+|||+=||.|.+...+.+. |.+ |.++|+++..++..+.+.. +. ..+|+.++... -..+|+++..
T Consensus 10 ~~lrv~~lFsG~Gg~~~gl~~a-G~~~v~a~e~d~~a~~~~~~N~~------~~--~~~Di~~~~~~~~~~~Dll~gg 78 (327)
T d2c7pa1 10 TGLRFIDLFAGLGGFRLALESC-GAECVYSNEWDKYAQEVYEMNFG------EK--PEGDITQVNEKTIPDHDILCAG 78 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHT-TCEEEEEECCCHHHHHHHHHHHS------CC--CBSCGGGSCGGGSCCCSEEEEE
T ss_pred CCCeEEEECccccHHHHHHHHC-CCeEEEEEeCCHHHHHHHHHHCC------CC--CcCchhcCchhhcceeeeeecc
Confidence 4799999999999999888665 655 5568999999988887752 11 24777765321 2458988864
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=82.78 E-value=1.9 Score=35.81 Aligned_cols=76 Identities=20% Similarity=0.245 Sum_probs=55.7
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEEEcCCCCCC-----C-----CC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLA-DKVSFQVGDALQQP-----F-----PD 224 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~-----~-----~~ 224 (371)
++++|=-|++.| .+..+++.+ |++|+.+|.+++.++.+.+.+...+.+ .++.++.+|+.+.. + .-
T Consensus 4 gK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 82 (274)
T d1xhla_ 4 GKSVIITGSSNG-IGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAKF 82 (274)
T ss_dssp TCEEEETTCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHHc
Confidence 677887886655 455555544 899999999999999888888777643 46889999998742 0 12
Q ss_pred CccceEEcccc
Q 017428 225 GQFDLVWSMES 235 (371)
Q Consensus 225 ~~fD~v~~~~~ 235 (371)
+..|+++.+..
T Consensus 83 G~iDilVnnAG 93 (274)
T d1xhla_ 83 GKIDILVNNAG 93 (274)
T ss_dssp SCCCEEEECCC
T ss_pred CCceEEEeecc
Confidence 57899887644
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=82.10 E-value=2.4 Score=34.84 Aligned_cols=77 Identities=19% Similarity=0.239 Sum_probs=55.1
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C----C--C
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F----P--D 224 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~----~--~ 224 (371)
++++|=.|++.| .+..+++.+ |++|+.+|.+++.++.+.+.+...+ .++.++..|+.+.. + . .
T Consensus 8 gK~alVTGas~G-IG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~~ 84 (259)
T d1xq1a_ 8 AKTVLVTGGTKG-IGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKG--FQVTGSVCDASLRPEREKLMQTVSSMFG 84 (259)
T ss_dssp TCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred CCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CceEEEeccCCCHHHHHHHHHHHHHHhC
Confidence 678888886654 445555444 8999999999999988888877765 47999999997642 0 1 2
Q ss_pred CccceEEccccccC
Q 017428 225 GQFDLVWSMESGEH 238 (371)
Q Consensus 225 ~~fD~v~~~~~l~~ 238 (371)
+..|+++.+....+
T Consensus 85 g~idilvnnAG~~~ 98 (259)
T d1xq1a_ 85 GKLDILINNLGAIR 98 (259)
T ss_dssp TCCSEEEEECCC--
T ss_pred CCcccccccccccC
Confidence 57899887755543
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=81.73 E-value=3.1 Score=33.95 Aligned_cols=72 Identities=15% Similarity=0.158 Sum_probs=52.2
Q ss_pred EEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----------CCCCccc
Q 017428 162 VVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----------FPDGQFD 228 (371)
Q Consensus 162 VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~~~~~fD 228 (371)
+|=-|++ +..+..+++.+ |++|+.+|.+++.++.+.+.+...+ .++.++.+|+.+.. -.-++.|
T Consensus 4 alITGas-~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD 80 (255)
T d1gega_ 4 ALVTGAG-QGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAG--GHAVAVKVDVSDRDQVFAAVEQARKTLGGFD 80 (255)
T ss_dssp EEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHTTCCC
T ss_pred EEEcCCc-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHHhCCcc
Confidence 3555654 55555555555 8999999999999998888887766 47889999998742 1136799
Q ss_pred eEEccccc
Q 017428 229 LVWSMESG 236 (371)
Q Consensus 229 ~v~~~~~l 236 (371)
+++.+..+
T Consensus 81 ilVnnAG~ 88 (255)
T d1gega_ 81 VIVNNAGV 88 (255)
T ss_dssp EEEECCCC
T ss_pred EEEecccc
Confidence 88876544
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=81.70 E-value=2.2 Score=35.22 Aligned_cols=75 Identities=21% Similarity=0.246 Sum_probs=52.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CC
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PD 224 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~ 224 (371)
+++.+|=.|++.| .+..+++.+ |++|+.+|.+++.++.+.+.+.. ..++.++..|+.+.. + ..
T Consensus 5 ~gKvalITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (268)
T d2bgka1 5 QDKVAIITGGAGG-IGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGS---PDVISFVHCDVTKDEDVRNLVDTTIAKH 80 (268)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC---TTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcC---CCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4788888886655 445555544 89999999999888777666543 346888999997742 0 12
Q ss_pred CccceEEccccc
Q 017428 225 GQFDLVWSMESG 236 (371)
Q Consensus 225 ~~fD~v~~~~~l 236 (371)
+..|+++.+...
T Consensus 81 g~iD~lVnnAG~ 92 (268)
T d2bgka1 81 GKLDIMFGNVGV 92 (268)
T ss_dssp SCCCEEEECCCC
T ss_pred CCcceecccccc
Confidence 578998876543
|
| >d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Tramtrack protein (two zinc-finger peptide) species: Drosophila melanogaster [TaxId: 7227]
Probab=81.16 E-value=0.17 Score=24.67 Aligned_cols=10 Identities=40% Similarity=0.886 Sum_probs=8.0
Q ss_pred CCCCc-cceee
Q 017428 6 RCDSC-TRFTV 15 (371)
Q Consensus 6 ~~~~~-~~~~~ 15 (371)
|||.| .+||.
T Consensus 3 pcp~cfkeftr 13 (26)
T d2drpa2 3 PCPFCFKEFTR 13 (26)
T ss_dssp ECTTTCCEESC
T ss_pred CCchhhHHhcc
Confidence 79999 77763
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=80.51 E-value=2.6 Score=32.73 Aligned_cols=75 Identities=16% Similarity=0.009 Sum_probs=48.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---CCCCccceEE
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---FPDGQFDLVW 231 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~v~ 231 (371)
++++||=.|++.| .+..+++.+ |++|+.++.+++.++...+.+.... ++.+...|..+.. -.-+..|+++
T Consensus 22 ~gK~vlItGasgG-IG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~d~~~~~~~~~~~~~iDili 97 (191)
T d1luaa1 22 KGKKAVVLAGTGP-VGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRF---KVNVTAAETADDASRAEAVKGAHFVF 97 (191)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHH---TCCCEEEECCSHHHHHHHTTTCSEEE
T ss_pred CCCEEEEECCCHH-HHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhcc---chhhhhhhcccHHHHHHHhcCcCeee
Confidence 4789999986544 444444433 8999999999998888777765542 3445666665431 0125679888
Q ss_pred ccccc
Q 017428 232 SMESG 236 (371)
Q Consensus 232 ~~~~l 236 (371)
.+...
T Consensus 98 n~Ag~ 102 (191)
T d1luaa1 98 TAGAI 102 (191)
T ss_dssp ECCCT
T ss_pred ecCcc
Confidence 76543
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.13 E-value=5.4 Score=32.11 Aligned_cols=73 Identities=18% Similarity=0.050 Sum_probs=49.6
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC------CCCCccce
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP------FPDGQFDL 229 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------~~~~~fD~ 229 (371)
++++|=.|++.| .+..+++.+ |++|+.+|.+++.++...+.. .++.++..|+.+.. -.-++.|+
T Consensus 5 GK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~------~~~~~~~~Dv~~~~~v~~~~~~~g~iDi 77 (242)
T d1cyda_ 5 GLRALVTGAGKG-IGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC------PGIEPVCVDLGDWDATEKALGGIGPVDL 77 (242)
T ss_dssp TCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS------TTCEEEECCTTCHHHHHHHHTTCCCCSE
T ss_pred CCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc------CCCeEEEEeCCCHHHHHHHHHHcCCCeE
Confidence 788898886655 555555544 899999999987766554432 36788899987742 11267899
Q ss_pred EEccccccC
Q 017428 230 VWSMESGEH 238 (371)
Q Consensus 230 v~~~~~l~~ 238 (371)
++.+.....
T Consensus 78 lVnnAg~~~ 86 (242)
T d1cyda_ 78 LVNNAALVI 86 (242)
T ss_dssp EEECCCCCC
T ss_pred EEECCcccc
Confidence 887654433
|