Citrus Sinensis ID: 017429

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-
Protein Sequence
MAAGEEKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVNFEHSVAFI
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccccccHHHHHHHHHHHHcHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccHHcccccHHHHcccccccccccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccHHHcHHHHEHHHHHHHHHHHHcHHHHHHHHcccccccEEEcHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHcccccccccHHHHHHHHcccccccHccccccccccHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEHEHHHHHcc
Coil and Loop (DISEMBL)
maageeklrepflknekryyencpgckvdqlkdtksglpitELFSIWIIVLCtalpisslfpfLYFMIKDFQIAKREedigsyagyvgssfmFGRALTSVFWGLvadrygrkpviiMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLiigpalggflaqpaekypnlfsseslfgkfpyflpclcISLFAFGVTIAafwlpetlhrhnddddscdvSYDALESASAevkeeegreatpkksllknwplmSSIIVYCVFSLHDMAYSEIFSLWanspkklgglnystQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVNFEHSVAFI
Flexible Loop (DISEMBL)
maageeklrepflknekRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESAsaevkeeegreatpkksllknwplMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVNFEHSVAFI
Low Complexity Region (SEG)
MAAGEEKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTawgigliigpalggflaQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNddddscdvsydALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVNFEHSVAFI
Disordered region (IsUnstruct)
****************KRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHR***********************************LLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVNFEHSV***
Disordered Region (DISOPRED)
****************************************TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALES***********EATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVNFEHSVAFI
Disordered Region (DISEMBL)
MAAGEEKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDAL******************KSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVNFEHSVAFI
Disordered Region (DISPRO)
*********EPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRH*******************************KKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVNFEHSVAFI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAGEEKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVNFEHSVAFI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	371	2.2.26 [Sep-21-2011]
Q94BZ1	478	Protein ZINC INDUCED FACI	yes	no	0.924	0.717	0.716	1e-146
Q8RWN2	486	Protein ZINC INDUCED FACI	no	no	0.956	0.730	0.644	1e-134
Q3EAQ5	484	Probable peptide/nitrate	no	no	0.905	0.694	0.596	1e-116
P25351	611	Uncharacterized membrane	yes	no	0.584	0.355	0.325	6e-29
B4EYY4	402	Multidrug resistance prot	yes	no	0.474	0.437	0.281	3e-10
A8GCZ5	411	Multidrug resistance prot	no	no	0.474	0.428	0.275	1e-09
D8MQN9	411	Multidrug resistance prot	no	no	0.525	0.474	0.269	2e-09
P0A4K5	399	Multi-drug resistance eff	yes	no	0.390	0.363	0.298	2e-08
P0A4K4	399	Multi-drug resistance eff	yes	no	0.390	0.363	0.298	2e-08
P02980	401	Tetracycline resistance p	yes	no	0.490	0.453	0.248	4e-08

>sp|Q94BZ1|ZIFL1_ARATH Protein ZINC INDUCED FACILITATOR-LIKE 1 OS=Arabidopsis thaliana GN=ZIFL1 PE=2 SV=1

 Score =  518 bits (1334), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 248/346 (71%), Positives = 289/346 (83%), Gaps = 3/346 (0%)

Query: 16  EKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAK 75
           EK ++E+C GCKVDQ+K  + G P  ELF++WIIVLCTALPISSLFPFLYFMI DF IAK
Sbjct: 11  EKNFHEDCSGCKVDQMKRLRRGFPFWELFTVWIIVLCTALPISSLFPFLYFMIDDFNIAK 70

Query: 76  REEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF 135
           +EEDIG YAG+VG SFM GRA TSV WGLVADRYGRKPVI++GTASVV+FNTLFGLS+NF
Sbjct: 71  KEEDIGFYAGFVGCSFMLGRAFTSVAWGLVADRYGRKPVILIGTASVVVFNTLFGLSLNF 130

Query: 136 WMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195
           WMA++TRF LGS NGLLGPIKAYA EIFR+E+Q L LS VSTAWGIGLIIGPA+GGFLAQ
Sbjct: 131 WMAIITRFCLGSFNGLLGPIKAYAMEIFRDEYQGLALSAVSTAWGIGLIIGPAIGGFLAQ 190

Query: 196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYD 255
           PA++YP+LFS +S+FGKFP+FLPCL IS+FAF VTI +  +PETLH H  +DD    SYD
Sbjct: 191 PAKQYPSLFSQDSIFGKFPFFLPCLAISVFAFLVTIVSSRIPETLHNHKFNDDE---SYD 247

Query: 256 ALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKL 315
           AL+  S + +  +  E   K SLL NWPL+SSIIVYCVFSLHDMAY+EIFSLWANSP+K 
Sbjct: 248 ALKDLSDDPESNKVAERNGKSSLLNNWPLISSIIVYCVFSLHDMAYTEIFSLWANSPRKY 307

Query: 316 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG 361
           GGL YST  VG VLA +GF LL+FQLSLY + ER+LGPI+V RI+G
Sbjct: 308 GGLGYSTADVGSVLAFSGFGLLIFQLSLYSYAERLLGPIIVTRISG 353

Major facilitator superfamily (MFS) transporter probably involved in 2,4-dichlorophenoxyacetic acid (2,4-D) export.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8RWN2|ZIF1_ARATH Protein ZINC INDUCED FACILITATOR 1 OS=Arabidopsis thaliana GN=ZIF1 PE=1 SV=2

 Score =  477 bits (1227), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 232/360 (64%), Positives = 279/360 (77%), Gaps = 5/360 (1%)

Query: 6   EKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLY 65
           E+ +E  L+ ++ Y++ CPGCKV+Q+K  + G P  EL  +WIIVL T+LPISSL+PFLY
Sbjct: 3   EEYKEALLE-KQNYHDGCPGCKVEQMKQLRRGYPYLELSFVWIIVLSTSLPISSLYPFLY 61

Query: 66  FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF 125
           +MI+DF +AK E+DIG YAG+VG SFM GRALTSVFWG+VADRYGRKP+I++GT S+ IF
Sbjct: 62  YMIEDFGVAKTEKDIGFYAGFVGCSFMLGRALTSVFWGIVADRYGRKPIILLGTISIAIF 121

Query: 126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLII 185
           N LFGLS NFWMA+ TRFLLGS N LLG +KAYA EIFR+E+QA  +S VSTAWGIGLII
Sbjct: 122 NALFGLSSNFWMAIGTRFLLGSFNCLLGTMKAYASEIFRDEYQATAMSAVSTAWGIGLII 181

Query: 186 GPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHND 245
           GPALGGFLAQPA+KYPN+FS ESLFG+F Y LPC  IS FA  VT+   ++PETLH H  
Sbjct: 182 GPALGGFLAQPADKYPNVFSQESLFGRFRYALPCFTISAFALLVTVLCCFIPETLHNHKL 241

Query: 246 DDDSCDVSYDALESASAEVKEEEGR----EATPKKSLLKNWPLMSSIIVYCVFSLHDMAY 301
           D  S D SYD LE+AS E     G+    E    +SLLKNWPLMSSIIVYCV  LHD AY
Sbjct: 242 DSLSHDDSYDILEAASHESSPSTGKAGKNERKASQSLLKNWPLMSSIIVYCVLCLHDTAY 301

Query: 302 SEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG 361
           SEIF+LWANSP+K GGL+YST  VG VLAI+G  L  FQ+ +YP  E++LGP++V R AG
Sbjct: 302 SEIFALWANSPRKYGGLSYSTNEVGTVLAISGLGLFSFQVFVYPLAEKLLGPVLVTRYAG 361

Major facilitator superfamily (MFS) transporter involved in zinc tolerance by participating in vacuolar sequestration of zinc.

Arabidopsis thaliana (taxid: 3702)

>sp|Q3EAQ5|PTR36_ARATH Probable peptide/nitrate transporter At3g43790 OS=Arabidopsis thaliana GN=ZIFL2 PE=2 SV=2

 Score =  419 bits (1076), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 207/347 (59%), Positives = 261/347 (75%), Gaps = 11/347 (3%)

Query: 21  ENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDI 80
           E+CPGC +D+ K  + G+P   L  IW++ LCTALPISSLFP++YFMI+DF IAK+EEDI
Sbjct: 15  EDCPGCIIDRTKQQQRGVPYLHLSFIWLVSLCTALPISSLFPYIYFMIRDFHIAKQEEDI 74

Query: 81  GSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVL 140
           G YAG+VGSSFM GRALTS+FWG +ADRYGRKP+I++GT SV+IFNTLFGLS +FW+A+ 
Sbjct: 75  GFYAGFVGSSFMIGRALTSIFWGKLADRYGRKPIILIGTFSVIIFNTLFGLSTSFWLAIS 134

Query: 141 TRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY 200
            RFLLG  N LLG I+AYA E+  EE+ AL LS VST+ GIGLI+GPA+GG+LAQPAEKY
Sbjct: 135 VRFLLGCFNCLLGVIRAYASEVVSEEYNALSLSVVSTSRGIGLILGPAIGGYLAQPAEKY 194

Query: 201 PNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESA 260
           PN+FS  S+FG+FPYFLP L IS++A  V IA +WLPETLH        C ++   L   
Sbjct: 195 PNIFSQSSVFGRFPYFLPSLVISVYATAVLIACWWLPETLHTR------CRIAQGRLNPT 248

Query: 261 SAEVKEEEG-----REATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKL 315
                E  G     ++   K SLL+N PLM+ IIVYCVFSL ++AY+EIFSLWA S +  
Sbjct: 249 ELNDDESRGGGLDEQKIINKPSLLRNRPLMAIIIVYCVFSLQEIAYNEIFSLWAVSDRSY 308

Query: 316 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGV 362
           GGL++S+Q VGEVLAI+G  LLVFQL +YP LE+ +G + V R++ V
Sbjct: 309 GGLSFSSQDVGEVLAISGLGLLVFQLLVYPPLEKSVGLLAVIRLSAV 355

Arabidopsis thaliana (taxid: 3702)

>sp|P25351|YCR3_YEAST Uncharacterized membrane protein YCR023C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YCR023C PE=1 SV=2

 Score =  128 bits (322), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 73/224 (32%), Positives = 120/224 (53%), Gaps = 7/224 (3%)

Query: 32  KDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSF 91
           K+   G P  +L  + ++     +  SSLFP++YFM++DF IA  +  +  Y+GY+ SSF
Sbjct: 9   KEQMDGFPWVQLVVVSLVRFSEPIAFSSLFPYVYFMVRDFNIAPNDAQVSKYSGYLSSSF 68

Query: 92  MFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGL 151
              + +++  WG  ++++GRK  +  G     +   + G S NF+ A++ R L+G LNG 
Sbjct: 69  ALCQVISAYHWGRFSEKHGRKITLTCGLIGTSVSLLILGFSRNFYQALVARSLMGLLNGN 128

Query: 152 LGPIKAYACEIFRE-EHQALGLSTVSTAWGIGLIIGPALGGFLA---QPAEKYPNLFS-- 205
           +G I+    EI  E +HQAL  ST+   +  G ++GP +GGFL        + P  F   
Sbjct: 129 VGVIRTIIGEIATERKHQALAFSTMPLLFQFGAVVGPMIGGFLVFRDGTMNEVPLWFPHF 188

Query: 206 SESLFGKFPYFLPCLCISLF-AFGVTIAAFWLPETLHRHNDDDD 248
           ++ +   +PY LP + + +F  FG+T A  +L ET     D  D
Sbjct: 189 AKRIIRSYPYALPNVVVCMFLMFGLTNATLFLEETHPAFKDRRD 232

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|B4EYY4|MDTG_PROMH Multidrug resistance protein MdtG OS=Proteus mirabilis (strain HI4320) GN=mdtG PE=3 SV=1

 Score = 66.6 bits (161), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 83/185 (44%), Gaps = 9/185 (4%)

Query: 42  ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGS-SFMFGRALTSV 100
            L+ +W     T    S + PFL   +++  I K  E +  + G   S +F+F  A+ + 
Sbjct: 13  NLYIVWFGCFLTGAGFSLIMPFLPLYVEELGI-KDHESLNLWTGVAFSITFLF-SAIAAP 70

Query: 101 FWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYAC 160
           FWG ++DR GRK +++     + I   L G + N W  ++ R LLG L G +    A   
Sbjct: 71  FWGKLSDRKGRKLMLLRSALGMAIVMVLIGFAQNIWQLLILRALLGVLGGFVPNANALIA 130

Query: 161 EIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCL 220
                +     L T+ST    G +IGP +GG LA      P  F + ++         C 
Sbjct: 131 TQVPVKKSGWALGTLSTGAVSGALIGPLIGGILADLYGLRPVFFITAAV------LFICF 184

Query: 221 CISLF 225
            ++LF
Sbjct: 185 IVTLF 189

Proteus mirabilis (strain HI4320) (taxid: 529507)

>sp|A8GCZ5|MDTG_SERP5 Multidrug resistance protein MdtG OS=Serratia proteamaculans (strain 568) GN=mdtG PE=3 SV=1

 Score = 64.3 bits (155), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 81/185 (43%), Gaps = 9/185 (4%)

Query: 42  ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGS-SFMFGRALTSV 100
            LF  W+    T    S + PFL   ++   +    + +  ++G V S +F+F  A+ S 
Sbjct: 13  NLFVAWLGCFLTGAAFSLIMPFLPLYVETLGVTG-HQALNMWSGLVFSITFLFS-AIASP 70

Query: 101 FWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYAC 160
           FWG +ADR GRK +++     + I   L G++ N W  +  R +LG L G +    A   
Sbjct: 71  FWGGLADRRGRKLMLLRSALGMSIVMLLMGMAQNIWQFLALRAVLGLLGGFIPNANALIA 130

Query: 161 EIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCL 220
                      L T+ST    G +IGP +GG LA      P  + +  +       L C 
Sbjct: 131 TQVPRNRSGWALGTLSTGGVSGALIGPLIGGLLADQYGLRPVFYITAGV------LLTCF 184

Query: 221 CISLF 225
            ++L 
Sbjct: 185 VLTLL 189

Serratia proteamaculans (strain 568) (taxid: 399741)

>sp|D8MQN9|MDTG_ERWBE Multidrug resistance protein MdtG OS=Erwinia billingiae (strain Eb661) GN=mdtG PE=3 SV=1

 Score = 63.5 bits (153), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 85/204 (41%), Gaps = 9/204 (4%)

Query: 42  ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGS-SFMFGRALTSV 100
            LF  W     T +  S + PFL   ++   +      +  ++G V S +F+F  A+ S 
Sbjct: 16  NLFVAWCGCFLTGIAFSLVMPFLPLYVELLGVTD-PHSLNMWSGLVFSITFLFS-AIASP 73

Query: 101 FWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYAC 160
           FWG +ADR GRK +++     + +   L GL+ + W  +  R +LG L G +    A   
Sbjct: 74  FWGGLADRKGRKIMLLRSALGMSVVMVLMGLATSIWQFLALRAVLGLLGGFVPNANALIA 133

Query: 161 EIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCL 220
                      L  +ST    G +IGP +GG LA      P  F + S+         C 
Sbjct: 134 TQVPRNKSGWALGWLSTGAVSGALIGPLIGGLLADSFGLRPVFFITASV------LFVCF 187

Query: 221 CISLFAFGVTIAAFWLPETLHRHN 244
            ++LFA           + LH H 
Sbjct: 188 IMTLFAVREEFVPVQKKDMLHAHQ 211

Erwinia billingiae (strain Eb661) (taxid: 634500)

>sp|P0A4K5|PMRA_STRR6 Multi-drug resistance efflux pump PmrA OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=pmrA PE=3 SV=1

 Score = 60.8 bits (146), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 72/151 (47%), Gaps = 6/151 (3%)

Query: 47  WIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVA 106
           W     T   IS + PF+   +++  +  ++  +  YAG   S      AL S  WG++A
Sbjct: 14  WFGNFLTGASISLVVPFMPIFVENLGVGSQQ--VAFYAGLAISVSAISAALFSPIWGILA 71

Query: 107 DRYGRKPVIIMGTASVVIFNTLFGLSV--NFWMAVLTRFLLGSLNGLLGPIKAYACEIFR 164
           D+YGRKP++I    ++ I  T+ GL+   N +  +  R L G   G +    A       
Sbjct: 72  DKYGRKPMMIRAGLAMTI--TMGGLAFVPNIYWLIFLRLLNGVFAGFVPNATALIASQVP 129

Query: 165 EEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195
           +E     L T+ST    G + GP +GGF+A+
Sbjct: 130 KEKSGSALGTLSTGVVAGTLTGPFIGGFIAE 160

Efflux pump for various substrates.

Streptococcus pneumoniae (strain ATCC BAA-255 / R6) (taxid: 171101)

>sp|P0A4K4|PMRA_STRPN Multi-drug resistance efflux pump PmrA OS=Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4) GN=pmrA PE=3 SV=1

 Score = 60.8 bits (146), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 72/151 (47%), Gaps = 6/151 (3%)

Query: 47  WIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVA 106
           W     T   IS + PF+   +++  +  ++  +  YAG   S      AL S  WG++A
Sbjct: 14  WFGNFLTGASISLVVPFMPIFVENLGVGSQQ--VAFYAGLAISVSAISAALFSPIWGILA 71

Query: 107 DRYGRKPVIIMGTASVVIFNTLFGLSV--NFWMAVLTRFLLGSLNGLLGPIKAYACEIFR 164
           D+YGRKP++I    ++ I  T+ GL+   N +  +  R L G   G +    A       
Sbjct: 72  DKYGRKPMMIRAGLAMTI--TMGGLAFVPNIYWLIFLRLLNGVFAGFVPNATALIASQVP 129

Query: 165 EEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195
           +E     L T+ST    G + GP +GGF+A+
Sbjct: 130 KEKSGSALGTLSTGVVAGTLTGPFIGGFIAE 160

Efflux pump for various substrates.

Streptococcus pneumoniae (taxid: 1313)

>sp|P02980|TCR2_ECOLX Tetracycline resistance protein, class B OS=Escherichia coli GN=tetA PE=1 SV=1

 Score = 59.7 bits (143), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 95/209 (45%), Gaps = 27/209 (12%)

Query: 48  IIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD 107
           +I L  A+ I  + P L  ++++F      EDI ++ G + + +   + + + + G ++D
Sbjct: 10  VITLLDAMGIGLIMPVLPTLLREF---IASEDIANHFGVLLALYALMQVIFAPWLGKMSD 66

Query: 108 RYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEH 167
           R+GR+PV+++      +   L   S   WM  L R     L+G+ G   A A  +  +  
Sbjct: 67  RFGRRPVLLLSLIGASLDYLLLAFSSALWMLYLGRL----LSGITGATGAVAASVIADTT 122

Query: 168 QALG----LSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCIS 223
            A         +  ++G+GLI GP +GGF     E  P+           P+F+  L ++
Sbjct: 123 SASQRVKWFGWLGASFGLGLIAGPIIGGF---AGEISPH----------SPFFIAAL-LN 168

Query: 224 LFAFGVTIAAFWLPETLHRHNDDDDSCDV 252
           +  F V +  FW  ET +  ++ D    V
Sbjct: 169 IVTFLVVM--FWFRETKNTRDNTDTEVGV 195

Resistance to tetracycline by an active tetracycline efflux. This is an energy-dependent process that decreases the accumulation of the antibiotic in whole cells. This protein functions as a metal-tetracycline/H(+) antiporter.

Escherichia coli (taxid: 562)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	371
224097490	495	predicted protein [Populus trichocarpa]	0.956	0.717	0.767	1e-154
359487104	1624	PREDICTED: uncharacterized protein LOC10	0.959	0.219	0.707	1e-152
296085436	518	unnamed protein product [Vitis vinifera]	0.959	0.687	0.707	1e-151
225465403	487	PREDICTED: protein ZINC INDUCED FACILITA	0.956	0.728	0.724	1e-149
225465405	487	PREDICTED: protein ZINC INDUCED FACILITA	0.959	0.731	0.740	1e-147
297807399	479	hypothetical protein ARALYDRAFT_488196 [	0.924	0.716	0.716	1e-147
30684565	478	zinc induced facilitator-like 1 protein	0.924	0.717	0.716	1e-144
79327804	411	zinc induced facilitator-like 1 protein	0.924	0.834	0.716	1e-144
227202678	392	AT5G13750 [Arabidopsis thaliana]	0.924	0.875	0.716	1e-144
10177340	441	transporter-like protein [Arabidopsis th	0.884	0.743	0.719	1e-136

>gi|224097490|ref|XP_002310957.1| predicted protein [Populus trichocarpa] gi|222850777|gb|EEE88324.1| predicted protein [Populus trichocarpa]

 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 278/362 (76%), Positives = 314/362 (86%), Gaps = 7/362 (1%)

Query: 6   EKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLY 65
           E+ RE  LK +  YYENCPGCKVDQLK+ K G P  +L SIWI+VLCTALPIS+LFPFLY
Sbjct: 3   EEYREALLKKDD-YYENCPGCKVDQLKELKKGFPFRDLISIWIVVLCTALPISTLFPFLY 61

Query: 66  FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF 125
           FMI+DF IA+REEDIG YAGYVGSSFM GRALTSVFWG+VADRYGRKPVI++GT +VVIF
Sbjct: 62  FMIRDFGIAEREEDIGYYAGYVGSSFMIGRALTSVFWGIVADRYGRKPVILLGTIAVVIF 121

Query: 126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLII 185
           NTLFGLSVNFWMA++TRFLLGSLNGLLGPIKAYA EIFR E+QALGLSTVSTAWG+GLII
Sbjct: 122 NTLFGLSVNFWMAIITRFLLGSLNGLLGPIKAYAVEIFRAEYQALGLSTVSTAWGLGLII 181

Query: 186 GPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHND 245
           GPALGGFLAQPAEKYPNLFS ESLFG+FPYFLPC CISLFA  VTI + WLPETLH HN+
Sbjct: 182 GPALGGFLAQPAEKYPNLFSKESLFGRFPYFLPCFCISLFALVVTIVSCWLPETLHVHNE 241

Query: 246 DDDSCDVSYDALESASAEVK------EEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDM 299
              S + SYDALE+A+   K      +++GR+ +  +SLLKNWPLMSSIIVYC+FSLHDM
Sbjct: 242 KKTSSNDSYDALEAATGASKGDETRTDDKGRKPSSNESLLKNWPLMSSIIVYCIFSLHDM 301

Query: 300 AYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARI 359
           AY+EIFSLWA S +KLGGL Y+T+ VGEVLAI+GFSLLVFQLSLYPF+ERILGPI VA+I
Sbjct: 302 AYTEIFSLWAESSRKLGGLGYTTEDVGEVLAISGFSLLVFQLSLYPFVERILGPIPVAQI 361

Query: 360 AG 361
           A 
Sbjct: 362 AA 363

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487104|ref|XP_002274088.2| PREDICTED: uncharacterized protein LOC100259102 [Vitis vinifera]

 Score =  544 bits (1402), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 257/363 (70%), Positives = 309/363 (85%), Gaps = 7/363 (1%)

Query: 5    EEKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFL 64
            EE+ RE  LK  K Y+E CPGC+V+ LKDT+ GLP+ +LF +WI+VLC ALPISSLFP+L
Sbjct: 1140 EEEQREVLLK--KVYHEGCPGCRVEHLKDTQRGLPVRQLFFVWIVVLCNALPISSLFPYL 1197

Query: 65   YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI 124
            YFMI+DF IAK E+DIG YAGY G+S+MFGRALTS+ WG+VADRYGRKPVI++GTASVVI
Sbjct: 1198 YFMIRDFNIAKTEKDIGYYAGYAGASYMFGRALTSILWGMVADRYGRKPVILVGTASVVI 1257

Query: 125  FNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLI 184
            FNTLFGLS+N+WMA+ +RFLLGS++ LLGPI AYA EIFREE+QALGLST++TAWG+GLI
Sbjct: 1258 FNTLFGLSLNYWMAISSRFLLGSMSTLLGPIMAYATEIFREEYQALGLSTINTAWGVGLI 1317

Query: 185  IGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHN 244
            IGPALGGFLAQPAEKYPN+FS ES+FG+FPYFLPCLC S++AFG+TIA  WL ETLH HN
Sbjct: 1318 IGPALGGFLAQPAEKYPNIFSKESIFGRFPYFLPCLCTSVYAFGITIACCWLQETLHTHN 1377

Query: 245  DDDDSCDVSYDALE-----SASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDM 299
            +++     SY+ALE     +A   V E E  + T K+SL+KNWPLMSSIIV+CVFSLHDM
Sbjct: 1378 ENNKLSKNSYNALEAPCGFNAEEAVNEIEANKPTSKESLIKNWPLMSSIIVFCVFSLHDM 1437

Query: 300  AYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARI 359
            AYSEIFSLWA SP+K GGL+YST  VG VLAI+GF +LVFQL LYP+LE++LGPI++ RI
Sbjct: 1438 AYSEIFSLWAVSPRKYGGLSYSTDDVGVVLAISGFGVLVFQLFLYPYLEKLLGPIIICRI 1497

Query: 360  AGV 362
            AGV
Sbjct: 1498 AGV 1500

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085436|emb|CBI29168.3| unnamed protein product [Vitis vinifera]

 Score =  542 bits (1396), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 257/363 (70%), Positives = 309/363 (85%), Gaps = 7/363 (1%)

Query: 5   EEKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFL 64
           EE+ RE  LK  K Y+E CPGC+V+ LKDT+ GLP+ +LF +WI+VLC ALPISSLFP+L
Sbjct: 34  EEEQREVLLK--KVYHEGCPGCRVEHLKDTQRGLPVRQLFFVWIVVLCNALPISSLFPYL 91

Query: 65  YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI 124
           YFMI+DF IAK E+DIG YAGY G+S+MFGRALTS+ WG+VADRYGRKPVI++GTASVVI
Sbjct: 92  YFMIRDFNIAKTEKDIGYYAGYAGASYMFGRALTSILWGMVADRYGRKPVILVGTASVVI 151

Query: 125 FNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLI 184
           FNTLFGLS+N+WMA+ +RFLLGS++ LLGPI AYA EIFREE+QALGLST++TAWG+GLI
Sbjct: 152 FNTLFGLSLNYWMAISSRFLLGSMSTLLGPIMAYATEIFREEYQALGLSTINTAWGVGLI 211

Query: 185 IGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHN 244
           IGPALGGFLAQPAEKYPN+FS ES+FG+FPYFLPCLC S++AFG+TIA  WL ETLH HN
Sbjct: 212 IGPALGGFLAQPAEKYPNIFSKESIFGRFPYFLPCLCTSVYAFGITIACCWLQETLHTHN 271

Query: 245 DDDDSCDVSYDALES-----ASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDM 299
           +++     SY+ALE+     A   V E E  + T K+SL+KNWPLMSSIIV+CVFSLHDM
Sbjct: 272 ENNKLSKNSYNALEAPCGFNAEEAVNEIEANKPTSKESLIKNWPLMSSIIVFCVFSLHDM 331

Query: 300 AYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARI 359
           AYSEIFSLWA SP+K GGL+YST  VG VLAI+GF +LVFQL LYP+LE++LGPI++ RI
Sbjct: 332 AYSEIFSLWAVSPRKYGGLSYSTDDVGVVLAISGFGVLVFQLFLYPYLEKLLGPIIICRI 391

Query: 360 AGV 362
           AGV
Sbjct: 392 AGV 394

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465403|ref|XP_002277598.1| PREDICTED: protein ZINC INDUCED FACILITATOR-LIKE 1 [Vitis vinifera] gi|296085440|emb|CBI29172.3| unnamed protein product [Vitis vinifera]

 Score =  535 bits (1377), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 263/363 (72%), Positives = 306/363 (84%), Gaps = 8/363 (2%)

Query: 6   EKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLY 65
           E+ + P LK  K YY+NC GC+V+QLK+T+ GLPI EL SIW +VLCTALPISSLFPFLY
Sbjct: 3   EEQQVPLLK--KVYYQNCSGCRVEQLKETRRGLPIRELVSIWSVVLCTALPISSLFPFLY 60

Query: 66  FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF 125
           FMI+DF IAKREEDIG YAGYVGS+FM GRALTSV WG+VADRYGRKPVI++GT +VVIF
Sbjct: 61  FMIRDFHIAKREEDIGYYAGYVGSAFMLGRALTSVAWGMVADRYGRKPVIMIGTITVVIF 120

Query: 126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLII 185
           NTLFGLSVNFWMA+ TRFLLGSLNG+LGPIKAYA EIFR+E+QALGLSTVSTA GIGLII
Sbjct: 121 NTLFGLSVNFWMALSTRFLLGSLNGVLGPIKAYAAEIFRDEYQALGLSTVSTARGIGLII 180

Query: 186 GPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHND 245
           GPALGGFLAQPAEKYP++FS +SLFG+FPYFLPCL IS++A  +T+A  WLPETLH HN+
Sbjct: 181 GPALGGFLAQPAEKYPDIFSEDSLFGRFPYFLPCLFISVYAMIITVACCWLPETLHTHNE 240

Query: 246 DDDSCDVSYDALESA----SAEVKEE--EGREATPKKSLLKNWPLMSSIIVYCVFSLHDM 299
           +  S + SYDALE A    +A+ KE+  EG E T  +SL  NWPLMSSII+YCVFSLHD+
Sbjct: 241 NKKSREDSYDALEGANGGSNAKEKEQEIEGSEPTSNESLFMNWPLMSSIIIYCVFSLHDI 300

Query: 300 AYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARI 359
           AY EIFSLWA SP+  GGL+YST  VG VLAI+GF L V Q++LYP +ER LGP+M+ RI
Sbjct: 301 AYIEIFSLWAVSPRIHGGLSYSTDDVGVVLAISGFGLFVSQVTLYPLVERFLGPVMICRI 360

Query: 360 AGV 362
           AGV
Sbjct: 361 AGV 363

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465405|ref|XP_002277751.1| PREDICTED: protein ZINC INDUCED FACILITATOR-LIKE 1 [Vitis vinifera] gi|296085442|emb|CBI29174.3| unnamed protein product [Vitis vinifera]

 Score =  526 bits (1354), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 271/366 (74%), Positives = 312/366 (85%), Gaps = 10/366 (2%)

Query: 3   AGEEKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFP 62
           A E+++  P LK  K YY+NC GC+V+QLK+T+ GLPI EL SIW +VLCTALPISSLFP
Sbjct: 2   AAEQQV--PLLK--KVYYQNCSGCRVEQLKETRRGLPIRELLSIWTVVLCTALPISSLFP 57

Query: 63  FLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV 122
           FLYFMI+DF IAKREEDIG YAGYVGS+FM GRALTSV WG+VADRYGRKPVI++GT +V
Sbjct: 58  FLYFMIRDFHIAKREEDIGYYAGYVGSAFMLGRALTSVAWGMVADRYGRKPVIMIGTIAV 117

Query: 123 VIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIG 182
           VIFNTLFGLSVNFWMA+ TRFLLGSLNGLLGPIKAYA EIFR+E+QALGLSTVSTAWGIG
Sbjct: 118 VIFNTLFGLSVNFWMALSTRFLLGSLNGLLGPIKAYAAEIFRDEYQALGLSTVSTAWGIG 177

Query: 183 LIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHR 242
           LIIGPALGGFLAQPAEKYP++FS +SLFG+FPYFLPCL IS++A  VT+A  WLPETLH 
Sbjct: 178 LIIGPALGGFLAQPAEKYPDIFSEDSLFGRFPYFLPCLFISVYAMIVTVACCWLPETLHT 237

Query: 243 HNDDDDSCDVSYDALESA----SAEVKEE--EGREATPKKSLLKNWPLMSSIIVYCVFSL 296
           HN++  S + SYDALE+A    +A+ KE+  EG E T  +SL  NWPLMSSIIVYCVFSL
Sbjct: 238 HNENKKSREDSYDALEAANGGSNAKEKEQEIEGSEPTSNESLFMNWPLMSSIIVYCVFSL 297

Query: 297 HDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMV 356
           HDMAY+EIFSLWA SP+  GGL+YST  VG VLAI+GF LLV QL+LYP +ER LGP+M+
Sbjct: 298 HDMAYTEIFSLWAVSPRIHGGLSYSTDDVGVVLAISGFGLLVSQLTLYPLVERFLGPVMI 357

Query: 357 ARIAGV 362
            RIAGV
Sbjct: 358 CRIAGV 363

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807399|ref|XP_002871583.1| hypothetical protein ARALYDRAFT_488196 [Arabidopsis lyrata subsp. lyrata] gi|297317420|gb|EFH47842.1| hypothetical protein ARALYDRAFT_488196 [Arabidopsis lyrata subsp. lyrata]

 Score =  526 bits (1354), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 250/349 (71%), Positives = 293/349 (83%), Gaps = 6/349 (1%)

Query: 16  EKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAK 75
           E +++E+CPGCKVDQ+K  + G P+ ELF++WIIVLCTALPISSLFPFLYFMI DF IAK
Sbjct: 11  ENKFHEDCPGCKVDQMKRLRRGFPLWELFTVWIIVLCTALPISSLFPFLYFMIDDFNIAK 70

Query: 76  REEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF 135
           +EEDIG YAG+VG SFM GRA TSV WGLVADRYGRKPVI++GTASVV+FNTLFGLS+NF
Sbjct: 71  KEEDIGFYAGFVGCSFMLGRAFTSVIWGLVADRYGRKPVILIGTASVVVFNTLFGLSLNF 130

Query: 136 WMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195
           WMA++TRF LGS NGLLGPIKAYA EIFR+E+Q L LS VSTAWGIGLIIGPA+GGFLAQ
Sbjct: 131 WMAIITRFCLGSFNGLLGPIKAYAMEIFRDEYQGLALSAVSTAWGIGLIIGPAIGGFLAQ 190

Query: 196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHN--DDDDSCDVS 253
           PA +YP+LFS +S+FGKFP+FLPC  IS+FAF VTI + W+PETLH H   DDDD    S
Sbjct: 191 PATQYPSLFSQDSIFGKFPFFLPCFAISVFAFLVTIISLWIPETLHNHKYVDDDD----S 246

Query: 254 YDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPK 313
           +DAL+  S + +  +  E   K SLL NWPL+SSIIVYCVFSLHDMAY+EIFSLWANSP+
Sbjct: 247 FDALKYLSHDPESNKVVERNEKSSLLNNWPLISSIIVYCVFSLHDMAYTEIFSLWANSPR 306

Query: 314 KLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGV 362
           K GGL YST  VG VLAI+GF LL+FQLSLY + ER+LGPI+V RI+G+
Sbjct: 307 KYGGLGYSTADVGSVLAISGFGLLIFQLSLYSYAERLLGPIIVTRISGI 355

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30684565|ref|NP_851036.1| zinc induced facilitator-like 1 protein [Arabidopsis thaliana] gi|75249957|sp|Q94BZ1.1|ZIFL1_ARATH RecName: Full=Protein ZINC INDUCED FACILITATOR-LIKE 1; AltName: Full=Protein ZIF-LIKE 1 gi|14517414|gb|AAK62597.1| AT5g13750/MXE10_2 [Arabidopsis thaliana] gi|17065582|gb|AAL32945.1| transporter-like protein [Arabidopsis thaliana] gi|20857393|gb|AAM26717.1| AT5g13750/MXE10_2 [Arabidopsis thaliana] gi|332004552|gb|AED91935.1| zinc induced facilitator-like 1 protein [Arabidopsis thaliana]

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 248/346 (71%), Positives = 289/346 (83%), Gaps = 3/346 (0%)

Query: 16  EKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAK 75
           EK ++E+C GCKVDQ+K  + G P  ELF++WIIVLCTALPISSLFPFLYFMI DF IAK
Sbjct: 11  EKNFHEDCSGCKVDQMKRLRRGFPFWELFTVWIIVLCTALPISSLFPFLYFMIDDFNIAK 70

Query: 76  REEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF 135
           +EEDIG YAG+VG SFM GRA TSV WGLVADRYGRKPVI++GTASVV+FNTLFGLS+NF
Sbjct: 71  KEEDIGFYAGFVGCSFMLGRAFTSVAWGLVADRYGRKPVILIGTASVVVFNTLFGLSLNF 130

Query: 136 WMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195
           WMA++TRF LGS NGLLGPIKAYA EIFR+E+Q L LS VSTAWGIGLIIGPA+GGFLAQ
Sbjct: 131 WMAIITRFCLGSFNGLLGPIKAYAMEIFRDEYQGLALSAVSTAWGIGLIIGPAIGGFLAQ 190

Query: 196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYD 255
           PA++YP+LFS +S+FGKFP+FLPCL IS+FAF VTI +  +PETLH H  +DD    SYD
Sbjct: 191 PAKQYPSLFSQDSIFGKFPFFLPCLAISVFAFLVTIVSSRIPETLHNHKFNDDE---SYD 247

Query: 256 ALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKL 315
           AL+  S + +  +  E   K SLL NWPL+SSIIVYCVFSLHDMAY+EIFSLWANSP+K 
Sbjct: 248 ALKDLSDDPESNKVAERNGKSSLLNNWPLISSIIVYCVFSLHDMAYTEIFSLWANSPRKY 307

Query: 316 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG 361
           GGL YST  VG VLA +GF LL+FQLSLY + ER+LGPI+V RI+G
Sbjct: 308 GGLGYSTADVGSVLAFSGFGLLIFQLSLYSYAERLLGPIIVTRISG 353

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79327804|ref|NP_001031877.1| zinc induced facilitator-like 1 protein [Arabidopsis thaliana] gi|332004554|gb|AED91937.1| zinc induced facilitator-like 1 protein [Arabidopsis thaliana]

 Score =  516 bits (1330), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 248/346 (71%), Positives = 289/346 (83%), Gaps = 3/346 (0%)

Query: 16  EKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAK 75
           EK ++E+C GCKVDQ+K  + G P  ELF++WIIVLCTALPISSLFPFLYFMI DF IAK
Sbjct: 11  EKNFHEDCSGCKVDQMKRLRRGFPFWELFTVWIIVLCTALPISSLFPFLYFMIDDFNIAK 70

Query: 76  REEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF 135
           +EEDIG YAG+VG SFM GRA TSV WGLVADRYGRKPVI++GTASVV+FNTLFGLS+NF
Sbjct: 71  KEEDIGFYAGFVGCSFMLGRAFTSVAWGLVADRYGRKPVILIGTASVVVFNTLFGLSLNF 130

Query: 136 WMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195
           WMA++TRF LGS NGLLGPIKAYA EIFR+E+Q L LS VSTAWGIGLIIGPA+GGFLAQ
Sbjct: 131 WMAIITRFCLGSFNGLLGPIKAYAMEIFRDEYQGLALSAVSTAWGIGLIIGPAIGGFLAQ 190

Query: 196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYD 255
           PA++YP+LFS +S+FGKFP+FLPCL IS+FAF VTI +  +PETLH H  +DD    SYD
Sbjct: 191 PAKQYPSLFSQDSIFGKFPFFLPCLAISVFAFLVTIVSSRIPETLHNHKFNDDE---SYD 247

Query: 256 ALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKL 315
           AL+  S + +  +  E   K SLL NWPL+SSIIVYCVFSLHDMAY+EIFSLWANSP+K 
Sbjct: 248 ALKDLSDDPESNKVAERNGKSSLLNNWPLISSIIVYCVFSLHDMAYTEIFSLWANSPRKY 307

Query: 316 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG 361
           GGL YST  VG VLA +GF LL+FQLSLY + ER+LGPI+V RI+G
Sbjct: 308 GGLGYSTADVGSVLAFSGFGLLIFQLSLYSYAERLLGPIIVTRISG 353

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|227202678|dbj|BAH56812.1| AT5G13750 [Arabidopsis thaliana]

 Score =  516 bits (1328), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 248/346 (71%), Positives = 289/346 (83%), Gaps = 3/346 (0%)

Query: 16  EKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAK 75
           EK ++E+C GCKVDQ+K  + G P  ELF++WIIVLCTALPISSLFPFLYFMI DF IAK
Sbjct: 11  EKNFHEDCSGCKVDQMKRLRRGFPFWELFTVWIIVLCTALPISSLFPFLYFMIDDFNIAK 70

Query: 76  REEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF 135
           +EEDIG YAG+VG SFM GRA TSV WGLVADRYGRKPVI++GTASVV+FNTLFGLS+NF
Sbjct: 71  KEEDIGFYAGFVGCSFMLGRAFTSVAWGLVADRYGRKPVILIGTASVVVFNTLFGLSLNF 130

Query: 136 WMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195
           WMA++TRF LGS NGLLGPIKAYA EIFR+E+Q L LS VSTAWGIGLIIGPA+GGFLAQ
Sbjct: 131 WMAIITRFCLGSFNGLLGPIKAYAMEIFRDEYQGLALSAVSTAWGIGLIIGPAIGGFLAQ 190

Query: 196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYD 255
           PA++YP+LFS +S+FGKFP+FLPCL IS+FAF VTI +  +PETLH H  +DD    SYD
Sbjct: 191 PAKQYPSLFSQDSIFGKFPFFLPCLAISVFAFLVTIVSSRIPETLHNHKFNDDE---SYD 247

Query: 256 ALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKL 315
           AL+  S + +  +  E   K SLL NWPL+SSIIVYCVFSLHDMAY+EIFSLWANSP+K 
Sbjct: 248 ALKDLSDDPESNKVAERNGKSSLLNNWPLISSIIVYCVFSLHDMAYTEIFSLWANSPRKY 307

Query: 316 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG 361
           GGL YST  VG VLA +GF LL+FQLSLY + ER+LGPI+V RI+G
Sbjct: 308 GGLGYSTADVGSVLAFSGFGLLIFQLSLYSYAERLLGPIIVTRISG 353

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|10177340|dbj|BAB10596.1| transporter-like protein [Arabidopsis thaliana]

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 238/331 (71%), Positives = 276/331 (83%), Gaps = 3/331 (0%)

Query: 31  LKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSS 90
           +K  + G P  ELF++WIIVLCTALPISSLFPFLYFMI DF IAK+EEDIG YAG+VG S
Sbjct: 1   MKRLRRGFPFWELFTVWIIVLCTALPISSLFPFLYFMIDDFNIAKKEEDIGFYAGFVGCS 60

Query: 91  FMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNG 150
           FM GRA TSV WGLVADRYGRKPVI++GTASVV+FNTLFGLS+NFWMA++TRF LGS NG
Sbjct: 61  FMLGRAFTSVAWGLVADRYGRKPVILIGTASVVVFNTLFGLSLNFWMAIITRFCLGSFNG 120

Query: 151 LLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLF 210
           LLGPIKAYA EIFR+E+Q L LS VSTAWGIGLIIGPA+GGFLAQPA++YP+LFS +S+F
Sbjct: 121 LLGPIKAYAMEIFRDEYQGLALSAVSTAWGIGLIIGPAIGGFLAQPAKQYPSLFSQDSIF 180

Query: 211 GKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGR 270
           GKFP+FLPCL IS+FAF VTI +  +PETLH H  +DD    SYDAL+  S + +  +  
Sbjct: 181 GKFPFFLPCLAISVFAFLVTIVSSRIPETLHNHKFNDDE---SYDALKDLSDDPESNKVA 237

Query: 271 EATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLA 330
           E   K SLL NWPL+SSIIVYCVFSLHDMAY+EIFSLWANSP+K GGL YST  VG VLA
Sbjct: 238 ERNGKSSLLNNWPLISSIIVYCVFSLHDMAYTEIFSLWANSPRKYGGLGYSTADVGSVLA 297

Query: 331 ITGFSLLVFQLSLYPFLERILGPIMVARIAG 361
            +GF LL+FQLSLY + ER+LGPI+V RI+G
Sbjct: 298 FSGFGLLIFQLSLYSYAERLLGPIIVTRISG 328

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	371
TAIR|locus:2177105	478	ZIFL1 "zinc induced facilitato	0.924	0.717	0.656	4.1e-120
TAIR|locus:2173254	486	ZIF1 "zinc induced facilitator	0.956	0.730	0.580	2.1e-109
TAIR|locus:2101109	484	ZIFL2 "AT3G43790" [Arabidopsis	0.919	0.704	0.564	1e-98
ASPGD|ASPL0000053890	591	AN0890 [Emericella nidulans (t	0.549	0.345	0.344	2.2e-38
CGD|CAL0004954	546	orf19.3432 [Candida albicans (	0.388	0.263	0.386	5e-33
DICTYBASE|DDB_G0269964	665	DDB_G0269964 "Uncharacterized	0.563	0.314	0.309	3e-32
CGD|CAL0002781	633	orf19.4550 [Candida albicans (	0.388	0.227	0.379	1.2e-31
DICTYBASE|DDB_G0282945	669	DDB_G0282945 [Dictyostelium di	0.568	0.315	0.297	3.4e-31
ASPGD|ASPL0000051539	480	AN1423 [Emericella nidulans (t	0.417	0.322	0.354	6.7e-28
SGD|S000000617	611	YCR023C "Vacuolar membrane pro	0.560	0.340	0.297	7.6e-27

TAIR|locus:2177105 ZIFL1 "zinc induced facilitator-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1182 (421.1 bits), Expect = 4.1e-120, P = 4.1e-120
 Identities = 227/346 (65%), Positives = 266/346 (76%)

Query:    16 EKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAK 75
             EK ++E+C GCKVDQ+K  + G P  ELF++WIIVLCTALPISSLFPFLYFMI DF IAK
Sbjct:    11 EKNFHEDCSGCKVDQMKRLRRGFPFWELFTVWIIVLCTALPISSLFPFLYFMIDDFNIAK 70

Query:    76 REEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF 135
             +EEDIG YAG+VG SFM GRA TSV WGLVADRYGRKPVI++GTASVV+FNTLFGLS+NF
Sbjct:    71 KEEDIGFYAGFVGCSFMLGRAFTSVAWGLVADRYGRKPVILIGTASVVVFNTLFGLSLNF 130

Query:   136 WMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTXXXXXXXXXXXXXXXXXQ 195
             WMA++TRF LGS NGLLGPIKAYA EIFR+E+Q L LS VST                 Q
Sbjct:   131 WMAIITRFCLGSFNGLLGPIKAYAMEIFRDEYQGLALSAVSTAWGIGLIIGPAIGGFLAQ 190

Query:   196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNXXXXXXXXXXX 255
             PA++YP+LFS +S+FGKFP+FLPCL IS+FAF VTI +  +PETLH H            
Sbjct:   191 PAKQYPSLFSQDSIFGKFPFFLPCLAISVFAFLVTIVSSRIPETLHNHKFNDDESYD--- 247

Query:   256 ALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKL 315
             AL+  S + +  +  E   K SLL NWPL+SSIIVYCVFSLHDMAY+EIFSLWANSP+K 
Sbjct:   248 ALKDLSDDPESNKVAERNGKSSLLNNWPLISSIIVYCVFSLHDMAYTEIFSLWANSPRKY 307

Query:   316 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG 361
             GGL YST  VG VLA +GF LL+FQLSLY + ER+LGPI+V RI+G
Sbjct:   308 GGLGYSTADVGSVLAFSGFGLLIFQLSLYSYAERLLGPIIVTRISG 353

GO:0005215 "transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0080167 "response to karrikin" evidence=IEP

TAIR|locus:2173254 ZIF1 "zinc induced facilitator 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1081 (385.6 bits), Expect = 2.1e-109, P = 2.1e-109
 Identities = 209/360 (58%), Positives = 255/360 (70%)

Query:     6 EKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLY 65
             E+ +E  L+ +  Y++ CPGCKV+Q+K  + G P  EL  +WIIVL T+LPISSL+PFLY
Sbjct:     3 EEYKEALLEKQN-YHDGCPGCKVEQMKQLRRGYPYLELSFVWIIVLSTSLPISSLYPFLY 61

Query:    66 FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF 125
             +MI+DF +AK E+DIG YAG+VG SFM GRALTSVFWG+VADRYGRKP+I++GT S+ IF
Sbjct:    62 YMIEDFGVAKTEKDIGFYAGFVGCSFMLGRALTSVFWGIVADRYGRKPIILLGTISIAIF 121

Query:   126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTXXXXXXXX 185
             N LFGLS NFWMA+ TRFLLGS N LLG +KAYA EIFR+E+QA  +S VST        
Sbjct:   122 NALFGLSSNFWMAIGTRFLLGSFNCLLGTMKAYASEIFRDEYQATAMSAVSTAWGIGLII 181

Query:   186 XXXXXXXXXQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNX 245
                      QPA+KYPN+FS ESLFG+F Y LPC  IS FA  VT+   ++PETLH H  
Sbjct:   182 GPALGGFLAQPADKYPNVFSQESLFGRFRYALPCFTISAFALLVTVLCCFIPETLHNHKL 241

Query:   246 XXXXXXXXXXALESASAEVKEEEGR----EATPKKSLLKNWPLMSSIIVYCVFSLHDMAY 301
                        LE+AS E     G+    E    +SLLKNWPLMSSIIVYCV  LHD AY
Sbjct:   242 DSLSHDDSYDILEAASHESSPSTGKAGKNERKASQSLLKNWPLMSSIIVYCVLCLHDTAY 301

Query:   302 SEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG 361
             SEIF+LWANSP+K GGL+YST  VG VLAI+G  L  FQ+ +YP  E++LGP++V R AG
Sbjct:   302 SEIFALWANSPRKYGGLSYSTNEVGTVLAISGLGLFSFQVFVYPLAEKLLGPVLVTRYAG 361

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0010043 "response to zinc ion" evidence=IEP

GO:0055069 "zinc ion homeostasis" evidence=IMP

TAIR|locus:2101109 ZIFL2 "AT3G43790" [Arabidopsis thaliana (taxid:3702)]

 Score = 980 (350.0 bits), Expect = 1.0e-98, P = 1.0e-98
 Identities = 193/342 (56%), Positives = 243/342 (71%)

Query:    21 ENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDI 80
             E+CPGC +D+ K  + G+P   L  IW++ LCTALPISSLFP++YFMI+DF IAK+EEDI
Sbjct:    15 EDCPGCIIDRTKQQQRGVPYLHLSFIWLVSLCTALPISSLFPYIYFMIRDFHIAKQEEDI 74

Query:    81 GSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVL 140
             G YAG+VGSSFM GRALTS+FWG +ADRYGRKP+I++GT SV+IFNTLFGLS +FW+A+ 
Sbjct:    75 GFYAGFVGSSFMIGRALTSIFWGKLADRYGRKPIILIGTFSVIIFNTLFGLSTSFWLAIS 134

Query:   141 TRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTXXXXXXXXXXXXXXXXXQPAEKY 200
              RFLLG  N LLG I+AYA E+  EE+ AL LS VST                 QPAEKY
Sbjct:   135 VRFLLGCFNCLLGVIRAYASEVVSEEYNALSLSVVSTSRGIGLILGPAIGGYLAQPAEKY 194

Query:   201 PNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNXXXXXXXXXXXALESA 260
             PN+FS  S+FG+FPYFLP L IS++A  V IA +WLPETLH                +  
Sbjct:   195 PNIFSQSSVFGRFPYFLPSLVISVYATAVLIACWWLPETLHTRCRIAQGRLNPTELNDDE 254

Query:   261 SAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNY 320
             S     +E ++   K SLL+N PLM+ IIVYCVFSL ++AY+EIFSLWA S +  GGL++
Sbjct:   255 SRGGGLDE-QKIINKPSLLRNRPLMAIIIVYCVFSLQEIAYNEIFSLWAVSDRSYGGLSF 313

Query:   321 STQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGV 362
             S+Q VGEVLAI+G  LLVFQL +YP LE+ +G + V R++ V
Sbjct:   314 SSQDVGEVLAISGLGLLVFQLLVYPPLEKSVGLLAVIRLSAV 355

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP

ASPGD|ASPL0000053890 AN0890 [Emericella nidulans (taxid:162425)]

 Score = 342 (125.4 bits), Expect = 2.2e-38, Sum P(2) = 2.2e-38
 Identities = 71/206 (34%), Positives = 106/206 (51%)

Query:    36 SGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGR 95
             S  PI +LF + +  +C  +   S+FP++Y M++ F +   +  I  YAG + SSF F  
Sbjct:    21 SAFPIRQLFVLALCRICEPIAFMSIFPYVYHMVESFHVTSNDRKIALYAGLITSSFTFAE 80

Query:    96 ALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI 155
                 +FWG ++D+ GRKPV+IMG     I   +FG + N   A++ R L G LNG +G +
Sbjct:    81 FSAGMFWGRMSDKIGRKPVLIMGLVGTAISMVVFGFAPNLATAMIARALGGLLNGNIGVL 140

Query:   156 KAYACEIFR-EEHQALGLSTVSTXXXXXXXXXXXXXXXXXQPAEKYPNLFSSESLFGKFP 214
             +    EI   +EHQ    S +                   QP + YP LFS ES+F KFP
Sbjct:   141 QTTVAEIVTVKEHQPRAYSIMPFVWCLGSIIGPAMGGALSQPCDNYPWLFSGESIFKKFP 200

Query:   215 YFLPCL-CISLFAFGVTIAAFWLPET 239
             + LP L C+ +   G+ +   +L ET
Sbjct:   201 FLLPNLVCVVVLMTGIVVGLLFLEET 226

GO:0003674 "molecular_function" evidence=ND

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0000329 "fungal-type vacuole membrane" evidence=IEA

CGD|CAL0004954 orf19.3432 [Candida albicans (taxid:5476)]

 Score = 275 (101.9 bits), Expect = 5.0e-33, Sum P(3) = 5.0e-33
 Identities = 56/145 (38%), Positives = 89/145 (61%)

Query:    32 KDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSF 91
             K++ +  PI ++  I II     L  +S+FP++YFMI+DF IA +EEDI  Y+GY+ SSF
Sbjct:     8 KESLNDFPIRQMIIICIIRFAEPLAFTSIFPYIYFMIRDFHIAIKEEDISQYSGYIASSF 67

Query:    92 MFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGL 151
                + L ++ WG ++++ GRK ++I+G     I   LFG + N++ A++ R L G LNG 
Sbjct:    68 AICQFLFAIHWGTMSEKLGRKLILIIGLLGTSISLLLFGFARNYYWALIARCLAGVLNGN 127

Query:   152 LGPIKAYACEIFREE-HQALGLSTV 175
             +  ++    EI  E+ HQ L  ST+
Sbjct:   128 VAVLRTMIGEIAVEKRHQPLAFSTM 152

GO:0015238 "drug transmembrane transporter activity" evidence=ISS

GO:0015893 "drug transport" evidence=ISS

GO:0016020 "membrane" evidence=ISS

DICTYBASE|DDB_G0269964 DDB_G0269964 "Uncharacterized membrane protein YCR023C" [Dictyostelium discoideum (taxid:44689)]

 Score = 282 (104.3 bits), Expect = 3.0e-32, Sum P(2) = 3.0e-32
 Identities = 65/210 (30%), Positives = 102/210 (48%)

Query:    32 KDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSF 91
             K+  + +P  +L   ++++LC A+  SS F ++   I    +  + E +G YAG++ SSF
Sbjct:     8 KNHVTPMPWKKLIGAYVLLLCEAISTSSFFTYISPFIIFLGVTDKAELVGYYAGFIASSF 67

Query:    92 MFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGL 151
                + L+S FWG +ADR GRKP++I G+   VI     G S +  M +L+R + G LNG 
Sbjct:    68 SAAQFLSSFFWGKMADRLGRKPILIFGSVGSVISLLCIGTSKSLVMLILSRSINGLLNGN 127

Query:   152 LGPIKAYACEIFREEHQALGLSTVSTXXXXXXXXXXXXXXXXXQPAEKYPNLFSSESLFG 211
             +G +K Y  E   + +Q      V                    P +   ++F    LF 
Sbjct:   128 IGVVKTYIGECTDKTNQVEAFGWVGLTWGLGSILGPSIGGLLADPVKNMSSIFKGSKLFE 187

Query:   212 KFPYFLPCLCIS-LFAFGVTIAAFWLPETL 240
              FP+FLP L I+ L   G      ++ ETL
Sbjct:   188 LFPFFLPNLVIAFLTIIGCVFTQLYMKETL 217

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

CGD|CAL0002781 orf19.4550 [Candida albicans (taxid:5476)]

 Score = 291 (107.5 bits), Expect = 1.2e-31, Sum P(2) = 1.2e-31
 Identities = 55/145 (37%), Positives = 85/145 (58%)

Query:    32 KDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSF 91
             ++   G P+ ++F I  I     +  +SLFP++YFMI+DF IA    DI  Y+GY+ +SF
Sbjct:    11 REQMKGFPLWQMFVISCIRFSEPIAFTSLFPYVYFMIRDFNIAPHSTDIAKYSGYLSASF 70

Query:    92 MFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGL 151
              F +    V WG  +D+YGRK +++MG     +   +FG S NFW+AV  R L+G LNG 
Sbjct:    71 AFCQFFCCVQWGKASDKYGRKKILLMGLLGTAVSMIIFGFSPNFWVAVFARSLMGCLNGN 130

Query:   152 LGPIKAYACEIF-REEHQALGLSTV 175
             +  ++    EI   + HQ++  ST+
Sbjct:   131 IAVLRTAIGEIATHKNHQSIAFSTL 155

GO:0015238 "drug transmembrane transporter activity" evidence=ISS

GO:0015893 "drug transport" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0000329 "fungal-type vacuole membrane" evidence=IEA

DICTYBASE|DDB_G0282945 DDB_G0282945 [Dictyostelium discoideum (taxid:44689)]

 Score = 282 (104.3 bits), Expect = 3.4e-31, Sum P(2) = 3.4e-31
 Identities = 63/212 (29%), Positives = 109/212 (51%)

Query:    29 DQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVG 88
             +QL DT + LP+ ++ +I+II+LC A+   S+FP++ F++  F +   +  +G + G + 
Sbjct:    65 NQLDDTITPLPMMKILAIFIIMLCDAINSLSIFPYVNFLVSSFNLTTDKNKLGYFVGILA 124

Query:    89 SSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSL 148
             SS+   + ++S FWG  ++  GR+P +++G    +I  T  G S N+ M V+ RFL G L
Sbjct:   125 SSYYIAQLVSSFFWGWFSNYRGRRPSLLLGLIGSMICLTGVGFSRNYPMVVVFRFLSGLL 184

Query:   149 NGLLGPIKAYACEIFREEHQALGLSTVSTXXXXXXXXXXXXXXXXXQPAEKYPNLFSSES 208
             NG +   K    EI    +QA   S +                      +K+P L    +
Sbjct:   185 NGNVSIAKTMLGEITDSSNQAKAFSFIGLSWGVGGIIAPLIGGFFSNFCKKHPELLGDGN 244

Query:   209 LFGKFPYFLPCLCISLFAF-GVTIAAFWLPET 239
             +F +FPY LP +   LF+  G+ +   +L E+
Sbjct:   245 IFCRFPYLLPNIICVLFSLTGLVLGYVYLQES 276

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

ASPGD|ASPL0000051539 AN1423 [Emericella nidulans (taxid:162425)]

 Score = 259 (96.2 bits), Expect = 6.7e-28, Sum P(2) = 6.7e-28
 Identities = 62/175 (35%), Positives = 94/175 (53%)

Query:    67 MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFN 126
             M+KDF + +   D   YAG + ++F    A T +FWG ++DR GRKPVII G A  ++  
Sbjct:     1 MVKDFHMGEGS-DASFYAGILVATFSLVEAFTGMFWGALSDRVGRKPVIISGLAGTIVSL 59

Query:   127 TLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIF-REEHQALGLSTVSTXXXXXXXX 185
              + G + N+W+A+L R L G LNG +G I+    EI  R EH+   +  +          
Sbjct:    60 LIVGFAPNYWVALLGRGLGGLLNGNIGVIQTMVGEIVKRPEHERPAIGGL---------- 109

Query:   186 XXXXXXXXXQPAEKYPNLFSSESLFGKFPYFLP-CLCISLFAFGVTIAAFWLPET 239
                      +PA+ YP++FS + +FG+FPY LP  +C +L    +  A  +L ET
Sbjct:   110 -------LAKPADNYPSVFSRDGIFGRFPYLLPNVVCSTLLLGSILFAWAFLQET 157

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

SGD|S000000617 YCR023C "Vacuolar membrane protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 274 (101.5 bits), Expect = 7.6e-27, Sum P(2) = 7.6e-27
 Identities = 64/215 (29%), Positives = 107/215 (49%)

Query:    32 KDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSF 91
             K+   G P  +L  + ++     +  SSLFP++YFM++DF IA  +  +  Y+GY+ SSF
Sbjct:     9 KEQMDGFPWVQLVVVSLVRFSEPIAFSSLFPYVYFMVRDFNIAPNDAQVSKYSGYLSSSF 68

Query:    92 MFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGL 151
                + +++  WG  ++++GRK  +  G     +   + G S NF+ A++ R L+G LNG 
Sbjct:    69 ALCQVISAYHWGRFSEKHGRKITLTCGLIGTSVSLLILGFSRNFYQALVARSLMGLLNGN 128

Query:   152 LGPIKAYACEIFRE-EHQALGLSTVSTXXXXXXXXX---XXXXXXXXQPAEKYPNLFS-- 205
             +G I+    EI  E +HQAL  ST+                          + P  F   
Sbjct:   129 VGVIRTIIGEIATERKHQALAFSTMPLLFQFGAVVGPMIGGFLVFRDGTMNEVPLWFPHF 188

Query:   206 SESLFGKFPYFLPCLCISLFA-FGVTIAAFWLPET 239
             ++ +   +PY LP + + +F  FG+T A  +L ET
Sbjct:   189 AKRIIRSYPYALPNVVVCMFLMFGLTNATLFLEET 223

GO:0016021 "integral to membrane" evidence=ISM;IEA

GO:0000329 "fungal-type vacuole membrane" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q94BZ1	ZIFL1_ARATH	No assigned EC number	0.7167	0.9245	0.7175	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	371
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	7e-21
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	8e-20
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	4e-13
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	2e-12
PRK09874	408	PRK09874, PRK09874, drug efflux system protein Mdt	1e-11
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	8e-11
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	2e-09
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	2e-08
PRK12307	426	PRK12307, PRK12307, putative sialic acid transport	4e-08
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	1e-07
PRK11102	377	PRK11102, PRK11102, bicyclomycin/multidrug efflux	5e-07
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	2e-06
TIGR00900	365	TIGR00900, 2A0121, H+ Antiporter protein	8e-06
PRK10473	392	PRK10473, PRK10473, multidrug efflux system protei	4e-05
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	4e-05
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	5e-05
COG0477	338	COG0477, ProP, Permeases of the major facilitator	2e-04
PRK11551	406	PRK11551, PRK11551, putative 3-hydroxyphenylpropio	2e-04
PRK11043	401	PRK11043, PRK11043, putative transporter; Provisio	3e-04
COG0738	422	COG0738, FucP, Fucose permease [Carbohydrate trans	0.001
PRK10489	417	PRK10489, PRK10489, enterobactin exporter EntS; Pr	0.001
TIGR01299	742	TIGR01299, synapt_SV2, synaptic vesicle protein SV	0.002
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	0.002
TIGR00710	385	TIGR00710, efflux_Bcr_CflA, drug resistance transp	0.004

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 92.1 bits (229), Expect = 7e-21
 Identities = 67/307 (21%), Positives = 113/307 (36%), Gaps = 45/307 (14%)

Query: 46  IWIIVLCTALPISSLFPFL-YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGL 104
           +++      L  S L P L  ++ +D  I+  E       G + ++F  G AL     G 
Sbjct: 1   LFLAAFLAGLGRSLLGPALPLYLAEDLGISPTE------IGLLLTAFSLGYALAQPLAGR 54

Query: 105 VADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIF 163
           ++DR+GR+ V+++G     +   L   + + W+ ++ R L G   G L P   A   + F
Sbjct: 55  LSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWF 114

Query: 164 REEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCIS 223
             E +   L  +S  +G+G  +GP LGG LA             SLFG    FL    ++
Sbjct: 115 PPEERGRALGLLSAGFGLGAALGPLLGGLLA-------------SLFGWRAAFLILAILA 161

Query: 224 LFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWP 283
           L A  +       P    +                      +E         K LL++  
Sbjct: 162 LLAAVLAALLLPRPPPESKRP-----------------KPAEEAPAPLVPAWKLLLRDPV 204

Query: 284 LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSL 343
           L   + +              F+L    P     L  S  + G +L + G    + +L L
Sbjct: 205 LWLLLALLLFGFA-------FFALLTYLPLYQEVLGLSALLAGLLLGLAGLLGAIGRLLL 257

Query: 344 YPFLERI 350
               +R+
Sbjct: 258 GRLSDRL 264

Length = 346

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 88.9 bits (221), Expect = 8e-20
 Identities = 46/154 (29%), Positives = 78/154 (50%), Gaps = 7/154 (4%)

Query: 43  LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFW 102
           L  +++    + L    L P L  + +D  ++       S AG + S+F  G AL S+  
Sbjct: 1   LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSA------SQAGLIVSAFSLGYALGSLLA 54

Query: 103 GLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIK-AYACE 161
           G ++DR+GR+ V+++G     + + L   + + W+ ++ RFLLG   G L P   A   E
Sbjct: 55  GYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAE 114

Query: 162 IFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195
            F  + +   L   S  +G+G ++GP LGG LA+
Sbjct: 115 WFPPKERGRALGLFSAGFGLGALLGPLLGGLLAE 148

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 65.8 bits (161), Expect = 4e-13
 Identities = 46/152 (30%), Positives = 72/152 (47%), Gaps = 16/152 (10%)

Query: 89  SSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSL 148
           + +  G+ + S   GL+ DR+GRKPV+++G    V+   +F LS N  + ++ RFL G  
Sbjct: 5   AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFG 64

Query: 149 NGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSE 207
                    A   +I+  E + + L  +S    +G ++GP LGG LAQ            
Sbjct: 65  AAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQ-------FLGWR 117

Query: 208 SLFGKFPYFLPCLCISLFAFGVTIAAFWLPET 239
           + F     FL  L ++ F     + AF LPET
Sbjct: 118 APF----LFLAILALAAFI----LLAFLLPET 141

Length = 141

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 67.4 bits (165), Expect = 2e-12
 Identities = 31/128 (24%), Positives = 60/128 (46%), Gaps = 7/128 (5%)

Query: 67  MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFN 126
           +  ++ +   +       G++ S+ + G A  ++F+G +ADR GR+ V++       +F 
Sbjct: 43  ISAEWGLDPVQ------LGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFT 96

Query: 127 TLFGLSVNFWMAVLTRFLLG-SLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLII 185
            L  L+ N    ++ RFL G  L GL+  + A   E   +  +   +  +   + IG  +
Sbjct: 97  LLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAV 156

Query: 186 GPALGGFL 193
           G  L G+L
Sbjct: 157 GGFLAGWL 164

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|182127 PRK09874, PRK09874, drug efflux system protein MdtG; Provisional

 Score = 65.3 bits (159), Expect = 1e-11
 Identities = 52/180 (28%), Positives = 79/180 (43%), Gaps = 9/180 (5%)

Query: 47  WIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGS-SFMFGRALTSVFWGLV 105
           W+    T    S + PFL   ++   +      +  ++G V S +F+F  A+ S FWG +
Sbjct: 20  WLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSA-LNMWSGLVFSITFLFS-AIASPFWGGL 77

Query: 106 ADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFRE 165
           ADR GRK +++     + I   L GL+ N W  ++ R LLG L G +    A        
Sbjct: 78  ADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGGFVPNANALIATQVPR 137

Query: 166 EHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLF 225
                 L T+ST    G ++GP  GG LA      P  F + S+         C  ++LF
Sbjct: 138 NKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASV------LFLCFLVTLF 191

Length = 408

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 62.6 bits (153), Expect = 8e-11
 Identities = 30/113 (26%), Positives = 54/113 (47%), Gaps = 1/113 (0%)

Query: 84  AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRF 143
           AG + +++  G AL +    L+  R  R+ +++   A  ++ N L  L+ +F + +L R 
Sbjct: 50  AGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARA 109

Query: 144 LLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195
           L G  +G+   I  A A  +     +   L+ V T   +  ++G  LG FL Q
Sbjct: 110 LAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQ 162

Length = 394

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 34/155 (21%), Positives = 63/155 (40%), Gaps = 4/155 (2%)

Query: 43  LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFW 102
           L  + ++ L   L     +  L ++    Q         + AG + S F  G  L ++  
Sbjct: 174 LRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSA--AEAGLLLSLFGLGGILGALLG 231

Query: 103 GLVADRYGRKPVIIM-GTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLL-GPIKAYAC 160
           GL++DR GR+ ++++ G     +   L  L+ +  + ++   LLG   G     +   A 
Sbjct: 232 GLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLAS 291

Query: 161 EIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195
           E+   E +       +T   +G  +GP L G L  
Sbjct: 292 ELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLD 326

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 19/58 (32%), Positives = 32/58 (55%)

Query: 89  SSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLG 146
           S F  G  L S  +G ++DR+GRK V+++ T    +   L   S N+ + ++ R L+G
Sbjct: 134 SCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVG 191

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional

 Score = 54.5 bits (131), Expect = 4e-08
 Identities = 39/159 (24%), Positives = 72/159 (45%), Gaps = 10/159 (6%)

Query: 43  LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFW 102
           LFS W+  +        +F  +Y +  D  +   E        ++ ++   GR      +
Sbjct: 20  LFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDME------GAFLATAAFIGRPFGGALF 73

Query: 103 GLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLG-SLNGLLGPIKAYACE 161
           GL+AD++GRKP+++    +  +   L GL+    M  L+RF++G  + G       YA E
Sbjct: 74  GLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVE 133

Query: 162 IFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY 200
            + +  ++   + + + +GIG II      F+   AE Y
Sbjct: 134 SWPKHLKSKASAFLVSGFGIGNIIAAY---FMPSFAEAY 169

Length = 426

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 4/94 (4%)

Query: 57  ISSLFPFLYFMIKDFQIAKREEDIGS--YAGYVGSSFMFGRALTSVFWGLVADRYGRKPV 114
           I +    + F  +   +        S   +G + S F  G  + S+F G + DR+GRK  
Sbjct: 19  IGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKS 78

Query: 115 IIMGTASVVIFNTLFGLSV--NFWMAVLTRFLLG 146
           +++G    VI   L G +   +F+M ++ R ++G
Sbjct: 79  LLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVG 112

Length = 449

>gnl|CDD|182964 PRK11102, PRK11102, bicyclomycin/multidrug efflux system; Provisional

 Score = 51.1 bits (123), Expect = 5e-07
 Identities = 49/182 (26%), Positives = 78/182 (42%), Gaps = 32/182 (17%)

Query: 72  QIAKREEDIGSYAGYVG---SSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTL 128
            IA    D G  AG V    S+++ G A+  +F+G +AD +GRKPVI+ GT    +    
Sbjct: 16  VIAA---DFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVA 72

Query: 129 FGLSVNFWMAVLTRFLLGSLNGLLGP-----IKAYACEIFREEHQALGLSTVSTAWGIGL 183
             L+      +  RF    L+GL        I A   ++F +E  +  +S V+    I  
Sbjct: 73  CALAQTIDQLIYMRF----LHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAP 128

Query: 184 IIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL-PETLHR 242
           ++ P +GG+L          FS  ++F           ++L A       F+  PETL +
Sbjct: 129 LLAPIIGGWLL-------VWFSWHAIF---------WVLALAAILAAALVFFFIPETLPK 172

Query: 243 HN 244
             
Sbjct: 173 ER 174

Length = 377

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 26/148 (17%), Positives = 59/148 (39%), Gaps = 10/148 (6%)

Query: 44  FSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWG 103
             + + +L       +L  +L    +   ++         AG +        A+  +  G
Sbjct: 205 LWLLLALLLFGFAFFALLTYLPLYQEVLGLSA------LLAGLLLGLAGLLGAIGRLLLG 258

Query: 104 LVADRYGRKPVIIMGTASVVIFN---TLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYA 159
            ++DR GR+  +++    +++      L  L+ +    ++   LLG   GL+ P + A  
Sbjct: 259 RLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWLLVALLLLGFGAGLVFPALNALV 318

Query: 160 CEIFREEHQALGLSTVSTAWGIGLIIGP 187
            ++  +E +       +TA  +G  +GP
Sbjct: 319 SDLAPKEERGTASGLYNTAGSLGGALGP 346

Length = 346

>gnl|CDD|162098 TIGR00900, 2A0121, H+ Antiporter protein

 Score = 46.9 bits (112), Expect = 8e-06
 Identities = 28/123 (22%), Positives = 45/123 (36%), Gaps = 10/123 (8%)

Query: 81  GSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII-------MGTASVVIFNTLFGLSV 133
            S       + M    + S   G +ADRY RK V+I       +  A +     L GL++
Sbjct: 33  ASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNI 92

Query: 134 NFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGF 192
             W   +   +L        P  +A   ++  EE      S       +  I+GP +GG 
Sbjct: 93  --WQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGL 150

Query: 193 LAQ 195
           +  
Sbjct: 151 MYA 153

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 365

>gnl|CDD|182486 PRK10473, PRK10473, multidrug efflux system protein MdtL; Provisional

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 23/59 (38%), Positives = 32/59 (54%)

Query: 89  SSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGS 147
           S ++ G A   +F G +ADR GRKPV I G A  +I + L  L+    + +  RFL G 
Sbjct: 45  SVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGI 103

Length = 392

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score = 45.3 bits (108), Expect = 4e-05
 Identities = 32/147 (21%), Positives = 59/147 (40%), Gaps = 10/147 (6%)

Query: 97  LTSVFWGLVADRYGRKPVI-IMGTASVVI--FNTLFGLSVNFWMAVLTRFLLGSLNGLLG 153
           L S   G +AD++ +  VI I+    V +     L      FW+A    FLLG+ + +  
Sbjct: 62  LLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYS 121

Query: 154 PIKA-YACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGK 212
           P K     E+  +E+ +     +     + ++ G AL  FL +         ++ S    
Sbjct: 122 PAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFE--SVNG---NTPSEILG 176

Query: 213 FPYFLPCLCISLFAFGVTIAAFWLPET 239
                  + +++   G  I A+ LP+ 
Sbjct: 177 RIAPAGLVLLAVAVLG-LIFAYRLPKV 202

Length = 1146

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 44.7 bits (106), Expect = 5e-05
 Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 13/120 (10%)

Query: 82  SYAGYVGSSFMFGRALTSVFWGLVADRYGRKPV----IIMGTASVVIFNTLFGLSVNFWM 137
           S A   G+ F FG  + S+ +G +ADR G +      ++    +V++ +TLF  ++   +
Sbjct: 285 SLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLL 344

Query: 138 AVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIG---LIIGPALGGFLA 194
             +  F    +NG    + A     +    +A G   V  A GIG    IIGP L G+L 
Sbjct: 345 GAIAGFF---VNGGQSGLYALMALFYPTAIRATG---VGWAIGIGRLGAIIGPILAGYLL 398

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|223553 COG0477, ProP, Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

 Score = 42.4 bits (98), Expect = 2e-04
 Identities = 42/157 (26%), Positives = 69/157 (43%), Gaps = 9/157 (5%)

Query: 43  LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFW 102
           L ++ +  L   L +  L P L  ++    ++          G + S+F  G A+ S+  
Sbjct: 4   LLALALAALLLGLDLGLLSPALPLLLSTLSLS----SGRLLYGLLLSAFFLGYAIGSLLA 59

Query: 103 GLVADRYGRKPVIIMGTASVVIFNTLFGLSVN--FWMAVLTRFLLGSLNGLLGPI-KAYA 159
           G + DRYGR+ V+I+G    ++   L  L+ N    + ++ R L G   G L P+  A  
Sbjct: 60  GPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALL 119

Query: 160 CEIFREEHQALGLSTV--STAWGIGLIIGPALGGFLA 194
            E F E  +      +    A  +GL +GP L G L 
Sbjct: 120 SEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLL 156

Length = 338

>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 17/62 (27%), Positives = 32/62 (51%)

Query: 85  GYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFL 144
           G+  S+ + G    ++  G +ADR GRK ++I+  A   +F+     + +F   ++ R L
Sbjct: 53  GWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLL 112

Query: 145 LG 146
            G
Sbjct: 113 TG 114

Length = 406

>gnl|CDD|182924 PRK11043, PRK11043, putative transporter; Provisional

 Score = 42.2 bits (100), Expect = 3e-04
 Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 3/45 (6%)

Query: 77  EEDIGSYAGYVGSS---FMFGRALTSVFWGLVADRYGRKPVIIMG 118
           + D+ + A  V +S   F+ G AL  + WG ++DRYGRKPV++ G
Sbjct: 33  QADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAG 77

Length = 401

>gnl|CDD|223809 COG0738, FucP, Fucose permease [Carbohydrate transport and metabolism]

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 41/158 (25%), Positives = 65/158 (41%), Gaps = 16/158 (10%)

Query: 40  ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTS 99
           +T LF +W  + C       L P L    + F +   E      A  +  +F  G  + S
Sbjct: 18  LTSLFFLWGFITCL---NDILIPHL---KEVFDLTYFE------ASLIQFAFFGGYFIMS 65

Query: 100 VFWGLVADRYGRKPVIIMGTASVVIFNTLFG---LSVNFWMAVLTRFLLGSLNGLL-GPI 155
           +  GL+  + G K  I++G     +   LF     S ++   ++  F+L S  GLL    
Sbjct: 66  LPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAA 125

Query: 156 KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL 193
             Y   + + E  A  L+      G+G I+GP LG  L
Sbjct: 126 NPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSL 163

Length = 422

>gnl|CDD|236700 PRK10489, PRK10489, enterobactin exporter EntS; Provisional

 Score = 40.0 bits (94), Expect = 0.001
 Identities = 36/125 (28%), Positives = 63/125 (50%), Gaps = 23/125 (18%)

Query: 88  GSSFMFGRALT----SVFWGL-----VADRYGRKPVIIMGTASVVIFNTLFGLSVNFWM- 137
           GS+   G ++T    ++F GL     +ADRY RK +I++   +  +     GL++N ++ 
Sbjct: 49  GSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLG--FIGLALNAFLP 106

Query: 138 --AVLTRFLLGSLNGLLGPIKAYACE------IFREE-HQALGLSTVSTAWGIGLIIGPA 188
             ++L  +LLG  +G  G +   A        + RE   QA  ++ ++    +G +I PA
Sbjct: 107 EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVR--LGSVISPA 164

Query: 189 LGGFL 193
           LGG L
Sbjct: 165 LGGLL 169

Length = 417

>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2

 Score = 40.3 bits (94), Expect = 0.002
 Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 8/125 (6%)

Query: 71  FQIAKREEDI---GSYAGYVGSSFMFGRALTSVFWGLVADRYGRKP--VIIMGTASVVIF 125
           F +   E+D+    S  G +G     G  + + FWG +AD+ GRK   +I +       F
Sbjct: 188 FVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAF 247

Query: 126 NTLFGLSVNFWMAVLTRFLLG-SLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLI 184
            + F     F++    R L G  + G +  + +Y  E   +E +   LS +   W IG I
Sbjct: 248 FSSFVQGYGFFL--FCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGI 305

Query: 185 IGPAL 189
              A+
Sbjct: 306 YAAAM 310

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 4/93 (4%)

Query: 57  ISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII 116
           I        F    F  A  +    S  G V S F+ G  + ++F G ++DR+GRK  ++
Sbjct: 47  IGGALALPAFE-FKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLL 105

Query: 117 MGTASVV---IFNTLFGLSVNFWMAVLTRFLLG 146
           +     V   I   L   +++  M ++ R LLG
Sbjct: 106 IIALLFVIGAILMGLAAFALSVEMLIVGRVLLG 138

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|233099 TIGR00710, efflux_Bcr_CflA, drug resistance transporter, Bcr/CflA subfamily

 Score = 38.5 bits (90), Expect = 0.004
 Identities = 27/107 (25%), Positives = 53/107 (49%), Gaps = 3/107 (2%)

Query: 89  SSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFL--LG 146
           + ++ G A   + WG ++DRYGR+PV+++G     + +    LS N    ++ RF+   G
Sbjct: 47  TLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFG 106

Query: 147 SLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL 193
           +  G +   +A   +I+  E  +   S +     +   + P LGG++
Sbjct: 107 ASAGSV-ISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYI 152

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. Length = 385

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	371
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	100.0
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.97
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.97
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.97
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.97
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.97
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.97
PRK03545	390	putative arabinose transporter; Provisional	99.97
TIGR00891	405	2A0112 putative sialic acid transporter.	99.96
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.96
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.96
PRK12307	426	putative sialic acid transporter; Provisional	99.96
TIGR00893	399	2A0114 d-galactonate transporter.	99.96
PRK10133	438	L-fucose transporter; Provisional	99.96
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.96
PRK11663	434	regulatory protein UhpC; Provisional	99.96
TIGR00900	365	2A0121 H+ Antiporter protein.	99.96
PRK10091	382	MFS transport protein AraJ; Provisional	99.96
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.96
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.96
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.96
PRK10504	471	putative transporter; Provisional	99.96
PLN00028	476	nitrate transmembrane transporter; Provisional	99.96
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.96
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.96
PRK10642	490	proline/glycine betaine transporter; Provisional	99.96
PRK09705	393	cynX putative cyanate transporter; Provisional	99.96
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.96
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.96
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.96
PRK03699	394	putative transporter; Provisional	99.96
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.95
KOG2615	451	consensus Permease of the major facilitator superf	99.95
PRK03633	381	putative MFS family transporter protein; Provision	99.95
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.95
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.95
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.95
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.95
TIGR00805	633	oat sodium-independent organic anion transporter.	99.95
PRK15075	434	citrate-proton symporter; Provisional	99.95
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.95
PRK09952	438	shikimate transporter; Provisional	99.95
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.95
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.95
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.95
PRK11043	401	putative transporter; Provisional	99.95
PRK03893	496	putative sialic acid transporter; Provisional	99.94
TIGR00895	398	2A0115 benzoate transport.	99.94
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.94
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.94
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.94
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.94
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.94
KOG0569	485	consensus Permease of the major facilitator superf	99.94
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.94
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.94
PRK05122	399	major facilitator superfamily transporter; Provisi	99.94
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.94
PRK12382	392	putative transporter; Provisional	99.94
PRK09874	408	drug efflux system protein MdtG; Provisional	99.93
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.93
KOG2533	495	consensus Permease of the major facilitator superf	99.93
PRK10054	395	putative transporter; Provisional	99.93
PRK10489	417	enterobactin exporter EntS; Provisional	99.93
TIGR00898	505	2A0119 cation transport protein.	99.93
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.93
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.93
KOG2532	466	consensus Permease of the major facilitator superf	99.93
KOG0254	513	consensus Predicted transporter (major facilitator	99.92
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.92
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.92
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.92
PRK11010	491	ampG muropeptide transporter; Validated	99.92
TIGR00901	356	2A0125 AmpG-related permease.	99.92
PRK11902	402	ampG muropeptide transporter; Reviewed	99.92
PRK15011	393	sugar efflux transporter B; Provisional	99.9
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.9
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.9
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.9
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.9
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.89
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.89
PRK09528	420	lacY galactoside permease; Reviewed	99.88
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.88
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.88
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.87
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.87
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.86
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.86
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.86
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.85
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.84
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.84
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.83
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.83
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.82
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.79
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.79
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.77
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.76
PTZ00207	591	hypothetical protein; Provisional	99.76
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.74
PRK10429	473	melibiose:sodium symporter; Provisional	99.73
PRK09669	444	putative symporter YagG; Provisional	99.73
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.73
PF13347	428	MFS_2: MFS/sugar transport protein	99.7
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.69
PRK09848	448	glucuronide transporter; Provisional	99.68
KOG3626	735	consensus Organic anion transporter [Secondary met	99.68
PRK10642	490	proline/glycine betaine transporter; Provisional	99.68
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.67
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.67
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.65
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.65
PRK15011	393	sugar efflux transporter B; Provisional	99.63
KOG2563	480	consensus Permease of the major facilitator superf	99.63
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.62
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.62
PRK11462	460	putative transporter; Provisional	99.62
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.62
COG2211	467	MelB Na+/melibiose symporter and related transport	99.61
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.61
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.61
PRK05122	399	major facilitator superfamily transporter; Provisi	99.6
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.6
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.58
PRK09528	420	lacY galactoside permease; Reviewed	99.57
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.56
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.56
PRK10489	417	enterobactin exporter EntS; Provisional	99.55
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.54
PRK12382	392	putative transporter; Provisional	99.53
PRK09874	408	drug efflux system protein MdtG; Provisional	99.53
PRK09705	393	cynX putative cyanate transporter; Provisional	99.53
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.53
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.53
PRK03633	381	putative MFS family transporter protein; Provision	99.52
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.52
TIGR00893	399	2A0114 d-galactonate transporter.	99.52
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.51
PRK03893	496	putative sialic acid transporter; Provisional	99.51
PRK03545	390	putative arabinose transporter; Provisional	99.51
PRK03699	394	putative transporter; Provisional	99.5
PRK09952	438	shikimate transporter; Provisional	99.49
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.48
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.46
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.46
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.45
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.45
KOG0569	485	consensus Permease of the major facilitator superf	99.44
PRK12307	426	putative sialic acid transporter; Provisional	99.43
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.43
PRK11663	434	regulatory protein UhpC; Provisional	99.42
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.42
TIGR00895	398	2A0115 benzoate transport.	99.42
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.4
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.38
PRK10504	471	putative transporter; Provisional	99.38
TIGR00891	405	2A0112 putative sialic acid transporter.	99.37
TIGR00900	365	2A0121 H+ Antiporter protein.	99.37
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.37
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.35
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.35
TIGR00898	505	2A0119 cation transport protein.	99.35
PRK15075	434	citrate-proton symporter; Provisional	99.33
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.32
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.31
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.31
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.31
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.3
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.3
PRK11010	491	ampG muropeptide transporter; Validated	99.29
PLN00028	476	nitrate transmembrane transporter; Provisional	99.29
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.28
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.28
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.27
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.27
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.27
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.25
PRK10054	395	putative transporter; Provisional	99.24
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.24
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.22
PRK10091	382	MFS transport protein AraJ; Provisional	99.22
KOG0637	498	consensus Sucrose transporter and related proteins	99.21
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.2
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.19
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	99.18
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.18
PRK11902	402	ampG muropeptide transporter; Reviewed	99.17
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.17
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.15
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.15
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.14
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.12
TIGR00901	356	2A0125 AmpG-related permease.	99.12
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.11
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.11
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.1
PF13347	428	MFS_2: MFS/sugar transport protein	99.1
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.1
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	99.08
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.08
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.08
PRK11043	401	putative transporter; Provisional	99.06
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.05
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.04
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.04
PRK10133	438	L-fucose transporter; Provisional	99.03
PRK09848	448	glucuronide transporter; Provisional	99.03
PRK10429	473	melibiose:sodium symporter; Provisional	99.03
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.98
PRK09669	444	putative symporter YagG; Provisional	98.94
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.93
KOG2532	466	consensus Permease of the major facilitator superf	98.89
KOG3762	618	consensus Predicted transporter [General function	98.87
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.86
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.85
COG0477	338	ProP Permeases of the major facilitator superfamil	98.84
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.82
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.81
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.8
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.79
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.79
PRK11462	460	putative transporter; Provisional	98.78
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	98.75
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.75
COG2211	467	MelB Na+/melibiose symporter and related transport	98.75
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	98.73
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.67
KOG0254	513	consensus Predicted transporter (major facilitator	98.65
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.64
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.63
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.62
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.59
KOG3098	461	consensus Uncharacterized conserved protein [Funct	98.58
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.54
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.52
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.51
PF12832	77	MFS_1_like: MFS_1 like family	98.47
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.41
KOG2533	495	consensus Permease of the major facilitator superf	98.31
PTZ00207	591	hypothetical protein; Provisional	98.3
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	98.26
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.16
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	98.09
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	98.09
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.03
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.03
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	97.97
COG3202	509	ATP/ADP translocase [Energy production and convers	97.85
KOG2615	451	consensus Permease of the major facilitator superf	97.82
PF12832	77	MFS_1_like: MFS_1 like family	97.75
PRK15462	493	dipeptide/tripeptide permease D; Provisional	97.56
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	97.51
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	97.41
KOG3810	433	consensus Micronutrient transporters (folate trans	97.37
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.35
KOG2563	480	consensus Permease of the major facilitator superf	97.3
KOG1330	493	consensus Sugar transporter/spinster transmembrane	97.29
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	97.2
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.18
KOG3762	618	consensus Predicted transporter [General function	97.08
PRK03612	521	spermidine synthase; Provisional	96.95
KOG3097	390	consensus Predicted membrane protein [Function unk	96.91
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	96.66
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	96.55
KOG3098	461	consensus Uncharacterized conserved protein [Funct	96.53
KOG2325	488	consensus Predicted transporter/transmembrane prot	96.35
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	96.22
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	95.9
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	95.87
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	95.65
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	95.62
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	95.19
TIGR00805	633	oat sodium-independent organic anion transporter.	95.05
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	94.92
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	94.46
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	94.35
KOG3880	409	consensus Predicted small molecule transporter inv	93.94
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	93.61
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	92.18
KOG0637	498	consensus Sucrose transporter and related proteins	91.7
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	87.44
COG3559	536	TnrB3 Putative exporter of polyketide antibiotics	85.84
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	83.44
KOG3626	735	consensus Organic anion transporter [Secondary met	83.24
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	82.33
KOG3880	409	consensus Predicted small molecule transporter inv	82.02
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	81.2
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	81.19

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.8e-31  Score=234.08  Aligned_cols=280  Identities=19%  Similarity=0.207  Sum_probs=243.5

Q ss_pred             CCChhHHHHHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHH
Q 017429           37 GLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII  116 (371)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~  116 (371)
                      +..+..++.+.++.|..+....+....+|++.+|+|+|..+      .|+..++|.++..+++|+...+.||+.||++++
T Consensus         9 ~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~------aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl   82 (394)
T COG2814           9 KPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGA------AGQLITAYALGVALGAPLLALLTGRLERRRLLL   82 (394)
T ss_pred             ccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHcccchHHHHH
Confidence            34556778888899999999999999999999999999999      999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcC
Q 017429          117 MGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (371)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~  195 (371)
                      ..+.++.++++++++++|++.++++|++.|+..|.+.+. .++..++.|+++|++++++...+.+++.++|.+++.++.+
T Consensus        83 ~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~  162 (394)
T COG2814          83 GLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQ  162 (394)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            999999999999999999999999999999999998886 9999999999999999999999999999999999999999


Q ss_pred             cCCCCCCcccccccccCccchhHHHHHHHHHHHHHH-HHhhccccccCCCCCCccchhhhhhhhhhhhhhhhhcccCCcc
Q 017429          196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATP  274 (371)
Q Consensus       196 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (371)
                                      .++||..|...+.++++.++ .+..+|  |++..++.+                     .+..+
T Consensus       163 ----------------~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~~~~~~---------------------~~~~~  203 (394)
T COG2814         163 ----------------LFGWRATFLAIAVLALLALLLLWKLLP--PSEISGSLP---------------------GPLRT  203 (394)
T ss_pred             ----------------HhhHHHHHHHHHHHHHHHHHHHHHhCC--CccCCCCCC---------------------cchhH
Confidence                            67778888888888877655 567778  221111110                     01123


Q ss_pred             ccccccccchHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 017429          275 KKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPI  354 (371)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~  354 (371)
                      ..+.+|+|.++...+..++....+++..+++..++.+.     .|++....++++..++++.++++ .+++++.|| +.+
T Consensus       204 ~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v-----~g~s~~~vs~~Ll~~Gv~~~~Gn-~~gGrl~dr-~~~  276 (394)
T COG2814         204 LLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESV-----AGFSVSAVSLVLLAFGIAGFIGN-LLGGRLADR-GPR  276 (394)
T ss_pred             HHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHc-----cCCCHhHHHHHHHHHHHHHHHHH-HHHhhhccc-cch
Confidence            45688999999999999999988888888888888877     89999999999999999999999 589999999 888


Q ss_pred             HHHHHHHHhhhhcc
Q 017429          355 MVARIAGVNFEHSV  368 (371)
Q Consensus       355 ~~~~~~~~~~~~~~  368 (371)
                      +.+.....++.+.+
T Consensus       277 ~~l~~~~~l~a~~~  290 (394)
T COG2814         277 RALIAALLLLALAL  290 (394)
T ss_pred             hHHHHHHHHHHHHH
Confidence            88777766655543

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.97  E-value=2.2e-29  Score=236.58  Aligned_cols=301  Identities=15%  Similarity=0.098  Sum_probs=234.6

Q ss_pred             hhHHHHHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHH
Q 017429           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (371)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~  119 (371)
                      +..+..+++..++..++...++..+|.+.+++|.+.++      .+|+.+++.++...+.++.|+++||+|||++++++.
T Consensus         5 ~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~------~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~   78 (495)
T PRK14995          5 WLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNE------LLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGG   78 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            44566788899999999999999999999999999999      999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHhhhccchhHH-HHHHhhhc-cccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcC
Q 017429          120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIF-REEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA  197 (371)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~  197 (371)
                      ++..++.+++++++|++.++++|+++|++.+...+. ...+.+.+ |+++|++++++......+|..+||.+++.+.+  
T Consensus        79 ~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~--  156 (495)
T PRK14995         79 TLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLE--  156 (495)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--
Confidence            999999999999999999999999999998887775 67776765 67899999999999999999999999999998  


Q ss_pred             CCCCCcccccccccCccchhHHHHHHHHHHHH-HHHHhhccccccCCCCCCccchhhh---------hhhhhhhh-----
Q 017429          198 EKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSY---------DALESASA-----  262 (371)
Q Consensus       198 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~---------~~~~~~~~-----  262 (371)
                                    .++||+.|++.....++. ++..+++||++.+..++.+......         ...+...+     
T Consensus       157 --------------~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~  222 (495)
T PRK14995        157 --------------HFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSL  222 (495)
T ss_pred             --------------cCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCch
Confidence                          455666666665555544 3445667776533222111111000         00000000     


Q ss_pred             -----------------hhhhhcccCCccccccccccchHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhh
Q 017429          263 -----------------EVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMV  325 (371)
Q Consensus       263 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  325 (371)
                                       ...|.+.+.+....+++++|.+....+..++......+...++|.|++..     +|+++.++
T Consensus       223 ~~~~~~~~~~~~~l~~f~~~e~~~~~p~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v-----~g~s~~~a  297 (495)
T PRK14995        223 WVTSLTLLTGALLLGLFIRTQLAASRPMIDMRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFV-----HGLSPLEA  297 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCHHHH
Confidence                             00112222333446788999888877777777776677777888888776     79999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHhhhhcc
Q 017429          326 GEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVNFEHSV  368 (371)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~  368 (371)
                      |..+....++..++. ++.+++.||+|+|+.+..+.++..++.
T Consensus       298 g~~~~~~~~~~~~~~-~~~g~l~~r~g~~~~~~~g~~~~~~~~  339 (495)
T PRK14995        298 GMFMLPVMVASGFSG-PIAGILVSRLGLRLVATGGMALSALSF  339 (495)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHcCchHHHHHHHHHHHHHH
Confidence            999999999999988 588999999999998887777665543

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.97  E-value=2.6e-29  Score=230.86  Aligned_cols=297  Identities=13%  Similarity=0.067  Sum_probs=224.7

Q ss_pred             CChhHHHHHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHH
Q 017429           38 LPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM  117 (371)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~  117 (371)
                      ..++.+..+++..++..++....+...|.+.+++|++..+      .+++.+++.+++.+++++.|+++||+|||+++..
T Consensus         5 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~------~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~   78 (412)
T TIGR02332         5 LFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATM------FGLAATLFYAAYVICGIPSNIMLAIIGARRWIAG   78 (412)
T ss_pred             ehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHH------HHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHH
Confidence            3456667788888889999999999999999999999999      9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCc
Q 017429          118 GTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP  196 (371)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~  196 (371)
                      +.++..++.+++++++|++.+++.|++.|++.+...+. ..++.|++|+++|++++++++.+..+|..++|.+++.+.+.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~  158 (412)
T TIGR02332        79 IMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILAL  158 (412)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999998888776 78999999999999999999999999999999999988641


Q ss_pred             CCCCCCcccccccccCccchhHHHHHHHHHHHH-HHHHhhccccccCCCC-CCccchhhhhhhhhhhhh---hhhhcccC
Q 017429          197 AEKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHND-DDDSCDVSYDALESASAE---VKEEEGRE  271 (371)
Q Consensus       197 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~  271 (371)
                      .. .         .+.++||..+++.++..++. .+..+++||+|++.+. .+++++...+..+....+   .++...+.
T Consensus       159 ~~-~---------~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (412)
T TIGR02332       159 DG-L---------MALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQPEGAFAHA  228 (412)
T ss_pred             CC-C---------CCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhccccccccccccccc
Confidence            00 0         00345666667766666544 4456678888754221 111111111111100000   00000000


Q ss_pred             ----CccccccccccchHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 017429          272 ----ATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFL  347 (371)
Q Consensus       272 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l  347 (371)
                          ...+++++ ++.++...+.+++......+..+++|.++.+.    +.+++..+++.+.....++.+++. ++.+++
T Consensus       229 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~----~~~~s~~~~~~~~~~~~l~~~~g~-l~~g~l  302 (412)
T TIGR02332       229 AMPQRSMLREIF-TPAIMLYTLAYFCLTNTLSAINIWTPQILQSF----NQGSSNIMIGLLAAIPQFCTIFGM-IWWSRH  302 (412)
T ss_pred             cccHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCCcHHHhHHHhhHHHHHHHHHH-HHHHHH
Confidence                11223333 57777777777777777788888999998652    146788889999999999999988 588999


Q ss_pred             HHHhchhHH
Q 017429          348 ERILGPIMV  356 (371)
Q Consensus       348 ~~r~~~~~~  356 (371)
                      .||+++|+.
T Consensus       303 ~dr~~~r~~  311 (412)
T TIGR02332       303 SDRLKERKH  311 (412)
T ss_pred             hcccCccHH
Confidence            999987664

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.97  E-value=8.3e-30  Score=238.11  Aligned_cols=292  Identities=14%  Similarity=0.068  Sum_probs=213.7

Q ss_pred             HHHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHH
Q 017429           44 FSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVV  123 (371)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~  123 (371)
                      ...++..++..++....++..|.+.+++|++..+      .|++.+++.+++.+++++.|+++||+|||+++..+.++.+
T Consensus        32 ~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~------~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~  105 (467)
T PRK09556         32 LVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTE------LGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSA  105 (467)
T ss_pred             HHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHH
Confidence            3555666667778888999999999999999999      9999999999999999999999999999999998888877


Q ss_pred             HHHHHHHh-----HHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcC
Q 017429          124 IFNTLFGL-----SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA  197 (371)
Q Consensus       124 ~~~~~~~~-----~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~  197 (371)
                      +..+..+.     +++++.+++.|++.|++.+...+. ..+++|++|+++|++++++.+.+..+|..+++.++..+.+..
T Consensus       106 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~  185 (467)
T PRK09556        106 ICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYF  185 (467)
T ss_pred             HHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhh
Confidence            77666554     589999999999999998887775 899999999999999999999999999999999887665410


Q ss_pred             CCCCCcccccccccCccchhHHHHHHHHHHHH-HHHHhhccccccCCCCCCccchhhhhhhhhhhhhhhhhcccCCc-cc
Q 017429          198 EKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREAT-PK  275 (371)
Q Consensus       198 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  275 (371)
                            +       ..+|+..+.+.++..++. ++.+++.+++|++....++++ ...+....+.+..++++..... ..
T Consensus       186 ------~-------~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  251 (467)
T PRK09556        186 ------F-------DGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEE-IFGEPISEEDKETESTDMTKWQIFV  251 (467)
T ss_pred             ------c-------cCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhh-cccCccchhhhccccccCcHHHHHH
Confidence                  0       113455555555554443 334445565553322111100 0000000000000000000001 12


Q ss_pred             cccccccchHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhchhH
Q 017429          276 KSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIM  355 (371)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~  355 (371)
                      +..+++|.+|...+..++......+...+.|.|+.+.     +|++..+++...+...++.+++. ++.+++.||+++|+
T Consensus       252 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~-----~g~s~~~a~~~~~~~~~~~~ig~-~~~G~lsDr~g~r~  325 (467)
T PRK09556        252 EYVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQE-----LGFSKEDAINTFTLFEIGALVGS-LLWGWLSDLANGRR  325 (467)
T ss_pred             HHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCc
Confidence            2367899999888888887777777888999998766     79999999999998999999988 58999999999987


Q ss_pred             HHHHHH
Q 017429          356 VARIAG  361 (371)
Q Consensus       356 ~~~~~~  361 (371)
                      .+..+.
T Consensus       326 ~~~~~~  331 (467)
T PRK09556        326 ALVACI  331 (467)
T ss_pred             hHHHHH
Confidence            665443

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.97  E-value=1.2e-29  Score=219.71  Aligned_cols=301  Identities=19%  Similarity=0.151  Sum_probs=242.9

Q ss_pred             CCChhHHHHHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHH
Q 017429           37 GLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII  116 (371)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~  116 (371)
                      +.+++.++.+++......+.+-.++...|.+.++.++|.+|      .|++.+.+.+.+.++..+.|.++||.+.|+.+.
T Consensus        25 ~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~------lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~   98 (448)
T COG2271          25 RWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQ------LGILGSAFSITYGVSKFVMGVLSDRSNPRYFMA   98 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHhhhhcccCCCceeeh
Confidence            34455566788888888888888999999999999999999      999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhccchhH-HHHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhh--hhh
Q 017429          117 MGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG--GFL  193 (371)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~--~~l  193 (371)
                      +++++.++.++++++.++.+.+.+..+++|+.+|.-.| +...++.++++++||+..++++++-++|+.+.|++.  +++
T Consensus        99 ~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~  178 (448)
T COG2271          99 FGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFF  178 (448)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHH
Confidence            99999999999999999999999999999999999777 599999999999999999999999999999999999  777


Q ss_pred             cCcCCCCCCcccccccccCccchhHHHHHHHHHHH-HHHHHhhccccccCCCCCCccchhhhhhhhhhhhhhhhh--ccc
Q 017429          194 AQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFG-VTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEE--EGR  270 (371)
Q Consensus       194 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  270 (371)
                      ..                +++|+..|++-++++++ +++.++..+|+|+..-..+-++ ...+..+.. +++++.  ...
T Consensus       179 ~~----------------~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~-~~~d~~e~~-~~~~~~~~ls~  240 (448)
T COG2271         179 AF----------------HGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEE-YRGDPLEIY-EEEKENEGLTA  240 (448)
T ss_pred             Hh----------------ccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHH-hhcCchhhh-hhhccCCCccH
Confidence            76                55677777887777765 4556777888876543322111 000111110 000000  011


Q ss_pred             CCccccccccccchHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 017429          271 EATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI  350 (371)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r  350 (371)
                      ...-.+.+++||.+|...+.+++....-++...|.|.|+.+.     .|+|...++...+.+-.+++++. ++.|+++||
T Consensus       241 ~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~-----k~~s~~~a~~a~~lfE~agl~G~-Ll~GwlSDk  314 (448)
T COG2271         241 WQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEV-----KGFSLVKANWAISLFEVAGLPGT-LLAGWLSDK  314 (448)
T ss_pred             HHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh-----cCCCHHHHHHHHHHHHHHhhHHH-HHHHHHHHH
Confidence            123456788999999999999999999999999999999998     89999999999999999999999 588999998


Q ss_pred             h--chhHHHH-HHHHhhhhc
Q 017429          351 L--GPIMVAR-IAGVNFEHS  367 (371)
Q Consensus       351 ~--~~~~~~~-~~~~~~~~~  367 (371)
                      +  |||..+. +++++..++
T Consensus       315 lfkgrR~p~~~i~~~~i~~~  334 (448)
T COG2271         315 LFKGRRGPMALIFMLLITAS  334 (448)
T ss_pred             hcccccchHHHHHHHHHHHH
Confidence            6  4554443 334444433

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.97  E-value=1.7e-28  Score=227.12  Aligned_cols=283  Identities=14%  Similarity=0.103  Sum_probs=203.6

Q ss_pred             hHHHHHHHHHHHhhcccccchhhHHHHHHhhcc---ccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHH
Q 017429           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQI---AKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM  117 (371)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~  117 (371)
                      +.+...++..+++.++...+....|.+.++++.   +..+   ....+...+...++..++++++|+++||+|||+++..
T Consensus        22 ~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~   98 (432)
T PRK10406         22 WAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQ---LLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLI   98 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            344455677888889998888888999999863   3332   0002333445556666999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhHHHH--------HHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHh
Q 017429          118 GTASVVIFNTLFGLSVNF--------WMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPA  188 (371)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~--------~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~  188 (371)
                      +.++++++.+++++++++        ..+++.|+++|++.|...+. .++++|++|+++|++..++.+.+...|..+++.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~  178 (432)
T PRK10406         99 SVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALL  178 (432)
T ss_pred             HHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence            999999999999887765        36899999999998887775 999999999999999999988888888888877


Q ss_pred             hhhhhcCcCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhhhhhhhhc
Q 017429          189 LGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEE  268 (371)
Q Consensus       189 i~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (371)
                      +...+.....+        .....++||.+|++.++.+++..+....+||+++++.++                      
T Consensus       179 ~~~~~~~~~~~--------~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~~----------------------  228 (432)
T PRK10406        179 VVVVLQQTLED--------AELREWGWRIPFALGAVLAVVALWLRRQLDETSQQETRA----------------------  228 (432)
T ss_pred             HHHHHHHhCCH--------HHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHHhh----------------------
Confidence            76555421000        000146788888887777666555555566654321000                      


Q ss_pred             ccCCccccccccccchHHHHHHHHHH-HhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 017429          269 GREATPKKSLLKNWPLMSSIIVYCVF-SLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFL  347 (371)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l  347 (371)
                      .++..++++++++++.+...+...+. ......+..++|.|+.+.     +|++..+.+.......+...+++. +.+++
T Consensus       229 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~-----~g~s~~~~~~~~~i~~~~~~i~~~-~~G~l  302 (432)
T PRK10406        229 LKEAGSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNT-----AGMHANVASGIMTAALFVFMLIQP-LIGAL  302 (432)
T ss_pred             hcccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence            00112456677787777655554433 445566777888887655     688888888888888888888774 67899


Q ss_pred             HHHhchhHHHHHHHH
Q 017429          348 ERILGPIMVARIAGV  362 (371)
Q Consensus       348 ~~r~~~~~~~~~~~~  362 (371)
                      .||++||+.+..+.+
T Consensus       303 ~Dr~grr~~~~~~~~  317 (432)
T PRK10406        303 SDKIGRRTSMLCFGS  317 (432)
T ss_pred             HHHcCchHHHHHHHH
Confidence            999999987766544

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.97  E-value=1.9e-28  Score=230.69  Aligned_cols=299  Identities=15%  Similarity=0.207  Sum_probs=231.0

Q ss_pred             HHHHHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHH
Q 017429           42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (371)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~  121 (371)
                      .+..+++..++..++.....+.+|.+.+++|.+..+      .+++.+.+.++..++.++.|+++||+|||++++.+.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~   76 (485)
T TIGR00711         3 LTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQ------VQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFA   76 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhh------hhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHH
Confidence            344566777888888888999999999999999998      99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCC
Q 017429          122 VVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY  200 (371)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~  200 (371)
                      ..++.++++.+++++.+++.|+++|++.+...+. .+++.|++|+++|+++++++..+..+|..+||.+++.+.+     
T Consensus        77 ~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-----  151 (485)
T TIGR00711        77 FTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIE-----  151 (485)
T ss_pred             HHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhcc-----
Confidence            9999999999999999999999999998887775 9999999999999999999999999999999999999987     


Q ss_pred             CCcccccccccCccchhHHHHHHHHHHHHH-HHHhhccccccCCCCCCccchhh-------------hhhhhhhhh----
Q 017429          201 PNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVS-------------YDALESASA----  262 (371)
Q Consensus       201 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~-------------~~~~~~~~~----  262 (371)
                                 .++|+..+++.+...++.. +..+..||+++...++.+.....             .+..+....    
T Consensus       152 -----------~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~  220 (485)
T TIGR00711       152 -----------NYHWRWIFLINVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNE  220 (485)
T ss_pred             -----------CcCceehhhhhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchH
Confidence                       3444444455555544433 34455666543222211110000             000000000    


Q ss_pred             ---------------hhhhhcccCCccccccccccchHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhH
Q 017429          263 ---------------EVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGE  327 (371)
Q Consensus       263 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  327 (371)
                                     ..++.+.+.+....++++++.++...+..++......+...++|.|.++.     +|+++.+++.
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-----~g~s~~~~g~  295 (485)
T TIGR00711       221 ILILSITGLVAIIAFVVWELTDDNPLVDLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQV-----LGYTALQAGL  295 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCccCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHH
Confidence                           00111122233344678889888888888877777777788889888776     7999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHhhhhcc
Q 017429          328 VLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVNFEHSV  368 (371)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~  368 (371)
                      ......++.+++. ++.+++.||+++|+.+..+..+..++.
T Consensus       296 ~~~~~~~~~~~~~-~~~g~l~~r~~~~~~~~~g~~~~~~~~  335 (485)
T TIGR00711       296 HILPVGLAPMLSS-PIAGRMGDKIDPRKLVTIGLILYAVGF  335 (485)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHhhcCcHHHHHHHHHHHHHHH
Confidence            9999999999988 588999999999998888777665543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK03545 putative arabinose transporter; Provisional

Probab=99.97  E-value=2.1e-28  Score=223.77  Aligned_cols=265  Identities=15%  Similarity=0.136  Sum_probs=206.3

Q ss_pred             hHHHHHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHH
Q 017429           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (371)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~  120 (371)
                      ..++.+.+..+..........+.+|.+.+++|.+..+      .++..+.+.+++.+++++.|+++||+|||+++..+.+
T Consensus         9 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~------~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~   82 (390)
T PRK03545          9 LRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQ------VGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFV   82 (390)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence            3444445544544444445566789999999999999      9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCC
Q 017429          121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK  199 (371)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~  199 (371)
                      +.+++.+.+++++|++.+++.|++.|++.+...+. .+++.|++|+++|++++++.+.+.++|..++|.+++.+.+    
T Consensus        83 ~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~----  158 (390)
T PRK03545         83 LFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQ----  158 (390)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHH----
Confidence            99999999999999999999999999988887775 8999999999999999999999999999999999999987    


Q ss_pred             CCCcccccccccCccchhHHHHHHHHHHHHHH-HHhhccccccCCCCCCccchhhhhhhhhhhhhhhhhcccCCcccccc
Q 017429          200 YPNLFSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSL  278 (371)
Q Consensus       200 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (371)
                                  .++|+..+.+.++..++..+ ....+||.+++++      +.                   .+..++.
T Consensus       159 ------------~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~------~~-------------------~~~~~~~  201 (390)
T PRK03545        159 ------------YLGWRTTFLAIGGGALITLLLLIKLLPLLPSEHS------GS-------------------LKSLPLL  201 (390)
T ss_pred             ------------HhcHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCc------ch-------------------HHHHHHH
Confidence                        55667766777666655443 3444565432110      00                   0123457


Q ss_pred             ccccchHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHH
Q 017429          279 LKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVAR  358 (371)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~  358 (371)
                      +++|.++......++..........+.+.+..+.     .|.++.+++.+....+++.++++ ++.+++.||.++|....
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~g~s~~~~~~~~~~~~~~~~~g~-~~~g~l~dr~~~~~~~~  275 (390)
T PRK03545        202 FRRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQV-----AGLSENFATLLLLLFGGAGIIGS-VLFSRLGNRHPSGFLLI  275 (390)
T ss_pred             HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCccHHHHHHHHHHHHHHHHH-HHHHHHhhccchhHHHH
Confidence            7888877665555544444444455566665544     68899999999999999999998 47899999999876543

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.96  E-value=6.2e-28  Score=221.77  Aligned_cols=301  Identities=13%  Similarity=0.148  Sum_probs=217.4

Q ss_pred             CCChhHHHHHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHH
Q 017429           37 GLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII  116 (371)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~  116 (371)
                      +.+++.+...++..+...++.....+..|.+.+++|.+..+      .+++.+++.++..+++++.|+++||+|||++++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~------~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~   81 (405)
T TIGR00891         8 RAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVD------AASLISAALISRWFGALMFGLWGDRYGRRLPMV   81 (405)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhh------HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence            34556677888899999999999999999999999999999      999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcC
Q 017429          117 MGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (371)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~  195 (371)
                      .+.++.+++.+++.++++++.+++.|++.|++.+...+. .+++.|++|+++|+++.++.+.+..+|..+++.+++.+.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~  161 (405)
T TIGR00891        82 TSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVP  161 (405)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998887775 9999999999999999999999999999999999999876


Q ss_pred             cCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhhhhh---hhhcccCC
Q 017429          196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEV---KEEEGREA  272 (371)
Q Consensus       196 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  272 (371)
                      .       .       ..+|+..+++.++..++.++....+||++++.++++++++ ..+..++...+.   ++..+...
T Consensus       162 ~-------~-------~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  226 (405)
T TIGR00891       162 V-------W-------GDGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKAL-VRTMVDILYGGEHRIANIVMTLA  226 (405)
T ss_pred             h-------c-------CccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhh-hhhHHHHHhccchhhhhhhhhhh
Confidence            1       1       1236666676666655555556677876543221111100 000000000000   00000000


Q ss_pred             cccccccc-ccc-hHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 017429          273 TPKKSLLK-NWP-LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI  350 (371)
Q Consensus       273 ~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r  350 (371)
                      ...+...+ ++. +...................++|.|..+.     +|++..+.+.+.+..+++.+++. ++.+++.||
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~s~~~~~~~~~~~~~~~~~g~-~~~g~l~dr  300 (405)
T TIGR00891       227 AAMVQSAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKAD-----LGLSPHTVANIVVFSNIGAIVGG-CVFGFLGDW  300 (405)
T ss_pred             HHhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            00011111 111 11222222223333334455667776554     78999999999999999999988 588999999


Q ss_pred             hchhHHHHHHHHhh
Q 017429          351 LGPIMVARIAGVNF  364 (371)
Q Consensus       351 ~~~~~~~~~~~~~~  364 (371)
                      +++|+.+..+.+..
T Consensus       301 ~g~~~~~~~~~~~~  314 (405)
T TIGR00891       301 LGRRKAYVCSLLAG  314 (405)
T ss_pred             hCchhhhHHHHHHH
Confidence            99999887665543

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.96  E-value=1.3e-27  Score=218.20  Aligned_cols=265  Identities=18%  Similarity=0.183  Sum_probs=204.1

Q ss_pred             ChhHHHHHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHH
Q 017429           39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (371)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~  118 (371)
                      .|+.+..+....+..........+.+|.+.+++|.++++      .++..+++.++..+++++.|+++||+|||++++.+
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~   91 (394)
T PRK10213         18 NWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGV------AGQSVTVTAFVAMFASLFITQTIQATDRRYVVILF   91 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHH
Confidence            445545444444444444445567789999999999999      99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcC
Q 017429          119 TASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA  197 (371)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~  197 (371)
                      .++.+++.+++.++++++.+++.|++.|++.+...+. .+++.|++|+++|++++++...+.++|..++|.+++.+.+  
T Consensus        92 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~--  169 (394)
T PRK10213         92 AVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGE--  169 (394)
T ss_pred             HHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence            9999999999999999999999999999998887775 8999999999999999999999999999999999999988  


Q ss_pred             CCCCCcccccccccCccchhHHHHHHHHHHHHHHH-HhhccccccCCCCCCccchhhhhhhhhhhhhhhhhcccCCcccc
Q 017429          198 EKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKK  276 (371)
Q Consensus       198 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (371)
                                    .++|+..+++.+++.++..+. ....||+++++.    +                     .....+
T Consensus       170 --------------~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~~~~----~---------------------~~~~~~  210 (394)
T PRK10213        170 --------------LIGWRNVFNAAAVMGVLCIFWIIKSLPSLPGEPS----H---------------------QKQNTF  210 (394)
T ss_pred             --------------hcCHHHHHHHHHHHHHHHHHHHHHHCCCCCcccc----c---------------------chhHHH
Confidence                          556666667666555544333 334566432110    0                     001234


Q ss_pred             ccccccchHHHHHHHHHHHhhhhhHHHHH-HHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhchhH
Q 017429          277 SLLKNWPLMSSIIVYCVFSLHDMAYSEIF-SLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIM  355 (371)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~  355 (371)
                      +.+++|.++...+..++..........++ |.|.. .     +|+++.+.+..+...+++.+++. .+.+++.||.+++.
T Consensus       211 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~-----~g~s~~~~g~~~~~~~~~~iig~-~~~~~l~~r~~~~~  283 (394)
T PRK10213        211 RLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMN-L-----AGFGVDGLTLVLLSFGIASFVGT-SLSSFILKRSVKLA  283 (394)
T ss_pred             HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-----cCCChhHHHHHHHHHHHHHHHHH-HHHHHHHhccchhH
Confidence            56778888877666555555555555555 55543 3     68999999999999999999998 57888999865443


Q ss_pred             HH
Q 017429          356 VA  357 (371)
Q Consensus       356 ~~  357 (371)
                      .+
T Consensus       284 l~  285 (394)
T PRK10213        284 LA  285 (394)
T ss_pred             HH
Confidence            33

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.96  E-value=5.3e-28  Score=220.77  Aligned_cols=279  Identities=18%  Similarity=0.201  Sum_probs=218.8

Q ss_pred             hHHHHHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHH
Q 017429           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (371)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~  120 (371)
                      +.++......+....+.....+..|.+.+++|.++++      .+++.+++.++..+++++.|+++||+|||+++..+.+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~   78 (385)
T TIGR00710         5 AFALLLGCLSILGPLGIDMYLPAFPEIAADLSTPASI------VQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLF   78 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHH
Confidence            3344444455566677778888999999999999999      9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCC
Q 017429          121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK  199 (371)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~  199 (371)
                      +.+++.+.+.++++++.+++.|++.|++.+...+. .+++.|++|+++|++++++.+....+|..++|.+++.+.+    
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~----  154 (385)
T TIGR00710        79 IFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILV----  154 (385)
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence            99999999999999999999999999998887775 9999999999999999999999999999999999999887    


Q ss_pred             CCCcccccccccCccchhHHHHHHHHHHHHHH-HHhhccccccCCCCCCccchhhhhhhhhhhhhhhhhcccCCcccccc
Q 017429          200 YPNLFSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSL  278 (371)
Q Consensus       200 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (371)
                                  .++|+..+++.++..++..+ ..+..||+++++++++  .+.                  ..+..++.
T Consensus       155 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~------------------~~~~~~~~  202 (385)
T TIGR00710       155 ------------WLSWHAIFAFLSLAGILLSALIFFILPETLPYEARIQ--IST------------------YFETFLLL  202 (385)
T ss_pred             ------------HcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccCC--HHH------------------HHHHHHHH
Confidence                        55677766766665555443 3455666543221100  000                  01134456


Q ss_pred             ccccchHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHH
Q 017429          279 LKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVAR  358 (371)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~  358 (371)
                      +++++++...+...+..........+.|.+..+.     +|+++.+.+.+.....++.++++ ++.+++.||+++|+.+.
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~g~~~~~~~~~~~~~~-~~~g~l~~~~~~~~~~~  276 (385)
T TIGR00710       203 LKSKMFWGYALIYGASFGGFFAFFSGAPFVYIDI-----MGVSPSVFGLLFALNIIAMIFGG-FLNGRFIKKWGAKSLLR  276 (385)
T ss_pred             HcCchhHHHHHHHHHHHHHHHHHHHcChHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCHHHHHH
Confidence            7788887776666655555555555666666544     78899999999999999999888 58899999999998877


Q ss_pred             HHHHhhhhc
Q 017429          359 IAGVNFEHS  367 (371)
Q Consensus       359 ~~~~~~~~~  367 (371)
                      .+..+..++
T Consensus       277 ~~~~~~~~~  285 (385)
T TIGR00710       277 MGLILFAVS  285 (385)
T ss_pred             HHHHHHHHH
Confidence            766554443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.96  E-value=6.2e-28  Score=223.38  Aligned_cols=289  Identities=17%  Similarity=0.250  Sum_probs=214.6

Q ss_pred             ChhHHHHHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHH
Q 017429           39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (371)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~  118 (371)
                      +++.++..++..+...++.....+..|.+.+++|.++.+      .++..+++.++..+++++.|+++||+|||+++..+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~------~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~   89 (426)
T PRK12307         16 QKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDME------GAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWS   89 (426)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHH
Confidence            345566777788888888888889999999999999999      99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcC
Q 017429          119 TASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA  197 (371)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~  197 (371)
                      .++.+++.++++++++++.+++.|++.|++.+...+. ..++.|++|+++|+++.++...+..+|.++++.+.+.+.+  
T Consensus        90 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~--  167 (426)
T PRK12307         90 IVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAE--  167 (426)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcc--
Confidence            9999999999999999999999999999998877765 8999999999999999999999999999999999988887  


Q ss_pred             CCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhhhhhhhhcccCCccccc
Q 017429          198 EKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKS  277 (371)
Q Consensus       198 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (371)
                                    .++|+..+++..+..++........||++++..++.+++          .++.++.........++
T Consensus       168 --------------~~~w~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~  223 (426)
T PRK12307        168 --------------AYGWRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLSGK----------GKHSQSAWSVFSLSMKG  223 (426)
T ss_pred             --------------cCCHHHHHHHHHHHHHHHHHHHHHCCCChHHHHhhhhcc----------ccccccchhhhhHHHHH
Confidence                          455666666644333333222233444432111100000          00000000011124556


Q ss_pred             cccccchHHHHHHHHHH---HhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 017429          278 LLKNWPLMSSIIVYCVF---SLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPI  354 (371)
Q Consensus       278 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~  354 (371)
                      +++++.++.........   .........++|.|...      .|+++.+.+.+.+..+++.++++ ++.+++.||+++|
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~g~-~~~g~l~dr~~~~  296 (426)
T PRK12307        224 LFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAG------EGFDTGVVSNLMTAAAFGTVLGN-IVWGLCADRIGLK  296 (426)
T ss_pred             HHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccH
Confidence            77777776544332222   22223355677777654      57888999999999999999988 5889999999999


Q ss_pred             HHHHHHHHhhhh
Q 017429          355 MVARIAGVNFEH  366 (371)
Q Consensus       355 ~~~~~~~~~~~~  366 (371)
                      +.+..+.++..+
T Consensus       297 ~~~~~~~~~~~~  308 (426)
T PRK12307        297 KTFSIGLLMSFL  308 (426)
T ss_pred             HHHHHHHHHHHH
Confidence            988777655443

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.96  E-value=3.1e-28  Score=222.73  Aligned_cols=276  Identities=17%  Similarity=0.151  Sum_probs=216.1

Q ss_pred             HhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHHh
Q 017429           52 CTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGL  131 (371)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~  131 (371)
                      +..++...+....|.+.+++|.+..+      .+++.+++.++..++.++.|+++||+|||+++..+.++.+++..++++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~g~s~~~------~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~   78 (399)
T TIGR00893         5 INYLDRANLSFAAPMLQEDLGLSAAQ------YGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAF   78 (399)
T ss_pred             HHHHHHHhhhHhHHHHHHhhCCChhh------HHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHH
Confidence            44556667778888999999999999      999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCCCCcccccccc
Q 017429          132 SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLF  210 (371)
Q Consensus       132 ~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~~~~~g~~~~~  210 (371)
                      +++++.+++.|++.|++.+...+. ..++.|++|+++|++++++.+....+|..++|.+++.+.+               
T Consensus        79 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~---------------  143 (399)
T TIGR00893        79 AGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILI---------------  143 (399)
T ss_pred             HcCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH---------------
Confidence            999999999999999998887775 9999999999999999999999999999999999999887               


Q ss_pred             cCccchhHHHHHHHHHHHHHHH-HhhccccccCCCCCCccchhhhhhhhhhhhhhhhhcccCCccccccccccchHHHHH
Q 017429          211 GKFPYFLPCLCISLFAFGVTIA-AFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSII  289 (371)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (371)
                       ..+|+..+.+.++..++..+. .+..||++++.+...++++....+......+.++++...+...++.+++|+++...+
T Consensus       144 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (399)
T TIGR00893       144 -HFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLAL  222 (399)
T ss_pred             -hCCchHHHHHHHHHHHHHHHHhhheecCCCCccccCCHHHHhhcchhhccccccccccCCCccchHHHhcCHHHHHHHH
Confidence             555666667766665554443 445566554322211111100000000000111112223344567788899988888


Q ss_pred             HHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhchhH
Q 017429          290 VYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIM  355 (371)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~  355 (371)
                      ..++..........+.|.|..+.     +|.++.+.+.+.....++.+++. ++.+++.||+++|+
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~  282 (399)
T TIGR00893       223 GQFLVNIGLGFFLTWFPTYLVQE-----RGLSILEAGFMASLPGIVGFIGM-ILGGRLSDLLLRRG  282 (399)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHH-----hcccHHHhhHHHHHHHHHHHHHH-HHHHHHHHHHhhcc
Confidence            88888888888888889888765     78899999999999999999988 58899999999985

>PRK10133 L-fucose transporter; Provisional

Probab=99.96  E-value=1.2e-27  Score=221.03  Aligned_cols=296  Identities=14%  Similarity=0.122  Sum_probs=219.8

Q ss_pred             ChhHHHHHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHH
Q 017429           39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (371)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~  118 (371)
                      ....+..+.+..+...+......+..|.+.+++|.++.+      .++..+.+.+++.+++++.|+++||+|||+++..+
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~------~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g   97 (438)
T PRK10133         24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQ------AGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITG   97 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence            334555667777788888888889999999999999999      99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH---HhHHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhc
Q 017429          119 TASVVIFNTLF---GLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (371)
Q Consensus       119 ~~~~~~~~~~~---~~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~  194 (371)
                      .++.+++.+++   ..+++++.+++.|+++|++.|...+. +.++.|+.|+++|.+.+++.+....+|..+||.+++.+.
T Consensus        98 ~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~  177 (438)
T PRK10133         98 LFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999775   45789999999999999998888775 888999877777777899999999999999999988765


Q ss_pred             CcCCC-----------CCCcccccccccCccchhHHHHHH-HHHHHHHHH-HhhccccccCCCCCCccchhhhhhhhhhh
Q 017429          195 QPAEK-----------YPNLFSSESLFGKFPYFLPCLCIS-LFAFGVTIA-AFWLPETLHRHNDDDDSCDVSYDALESAS  261 (371)
Q Consensus       195 ~~~~~-----------~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~  261 (371)
                      ....+           .....+|+..+ ..+|+.+++... +..++.++. ...+||.+.++   .++++          
T Consensus       178 ~~~~~~~~~~~~~~l~~~~~~~w~~~~-~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~~---~~~~~----------  243 (438)
T PRK10133        178 LSNVPHQSQDVLDKMTPEQLSAYKHSL-VLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN---HSDAK----------  243 (438)
T ss_pred             hcCCcccchhhhhccChhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc---ccccc----------
Confidence            21100           00012455554 456888776433 332222222 23344422110   00000          


Q ss_pred             hhhhhhcccCCccccccccccchHHHHHHHHHHHhhhhhHHHHHHHHh-cCCCccCCccccchhhhHHHHHHHHHHHHHH
Q 017429          262 AEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWA-NSPKKLGGLNYSTQMVGEVLAITGFSLLVFQ  340 (371)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~  340 (371)
                            ..+.....++++++|.++...+..++......+...+.+.|+ ++.     +|+++.+++..+....++.++++
T Consensus       244 ------~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~-----~g~s~~~ag~~~~~~~~~~~vG~  312 (438)
T PRK10133        244 ------QGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEI-----PGMTAGFAANYLTGTMVCFFIGR  312 (438)
T ss_pred             ------ccchhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence                  001112345678889888777766766666666667777674 333     79999999999999999999999


Q ss_pred             HHHHHHHHHHhchhHHHHHHHHhhhh
Q 017429          341 LSLYPFLERILGPIMVARIAGVNFEH  366 (371)
Q Consensus       341 ~~~~~~l~~r~~~~~~~~~~~~~~~~  366 (371)
                       +..+++.||+++|+++..+.++..+
T Consensus       313 -~~~g~l~~r~g~~~~l~~~~~~~~~  337 (438)
T PRK10133        313 -FTGTWLISRFAPHKVLAAYALIAMA  337 (438)
T ss_pred             -HHHHHHHHHcCHHHHHHHHHHHHHH
Confidence             5889999999999988777655443

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.96  E-value=6.1e-28  Score=217.53  Aligned_cols=245  Identities=15%  Similarity=0.051  Sum_probs=186.6

Q ss_pred             ccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHHhHHHH
Q 017429           56 PISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF  135 (371)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~  135 (371)
                      ....+.+.+|.+.+|+|++..+      .|++.+++.+++.+++++.|+++||+|||+++..+......+.......+++
T Consensus         6 ~~~~~~~~lp~i~~~~~~s~~~------~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~   79 (368)
T TIGR00903         6 IWVTFSPVLSLVAEDIDVSKEE------LGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNY   79 (368)
T ss_pred             HHHHHHhhHHHHHHHhCcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccH
Confidence            3455678999999999999999      9999999999999999999999999999988776655554544333334789


Q ss_pred             HHHHHHHHHHhhhccchhHHHHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCCCCcccccccccCccc
Q 017429          136 WMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPY  215 (371)
Q Consensus       136 ~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~~~~~g~~~~~~~~~~  215 (371)
                      +.+++.|+++|++.+...+....++|++|+++|++++++.+.+..+|..+++.+++.+.+                .++|
T Consensus        80 ~~l~~~R~l~G~g~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~----------------~~gW  143 (368)
T TIGR00903        80 EWLLACQLLAALGQPFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYT----------------AGGL  143 (368)
T ss_pred             HHHHHHHHHHHhHhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------ccch
Confidence            999999999999988765567777999999999999999999999999999999999987                5566


Q ss_pred             hhHHHHHHHHHHHH-HHHHhhccccccCCCCCCccchhhhhhhhhhhhhhhhhcccCCccccccccccchHHHHHHHHHH
Q 017429          216 FLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVF  294 (371)
Q Consensus       216 ~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (371)
                      |..+++.++++++. ++..+++||+|+++.+..   +..           +     ..+++++++++|.+|...+.+++.
T Consensus       144 r~~f~~~~~l~~~~~~~~~~~lp~~p~~~~~~~---~~~-----------~-----~~~~~~~ll~~~~~~~~~~~~~~~  204 (368)
T TIGR00903       144 QLLIIPIAAVAAAGIILVLAALPALPFQAAEGF---GFK-----------D-----AVKEFGALAGRKDLWIIGAILGFG  204 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCc---chH-----------H-----HHHHHHHHHcChhHHHHHHHHHHH
Confidence            76667766665544 445677898775432110   000           0     001356788999999999999999


Q ss_pred             HhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 017429          295 SLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILG  352 (371)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~  352 (371)
                      .....++.++.|.|+.+      .|++.. .+.......+.+.++.    +++.||..
T Consensus       205 ~~~~~~~~~wlp~~L~~------~g~s~~-~~~~~~l~~~~g~~g~----~~~~d~~~  251 (368)
T TIGR00903       205 VALFDNLAIWLEAALRP------AGLEDI-AGDAVALAILAGLIGV----AVIPDRVA  251 (368)
T ss_pred             HHHHHHHHHHHHHHHHH------CCCChH-HHHHHHHHHHHHHHHH----HHhhHHhh
Confidence            99999999999999964      356654 5555555555555544    44555543

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.96  E-value=6.1e-28  Score=223.45  Aligned_cols=281  Identities=16%  Similarity=0.159  Sum_probs=212.8

Q ss_pred             hHHHHHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHH
Q 017429           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (371)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~  120 (371)
                      +.++...+..++..+........+|.+.+++|.+..+      .+++.+.+.++..+++++.|+++||+|||+++.++.+
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~   96 (434)
T PRK11663         23 HILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSD------IGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLI   96 (434)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHH
Confidence            3334555666666777777888899999999999999      9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCC
Q 017429          121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK  199 (371)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~  199 (371)
                      +.+++.++++++++++.+++.|++.|++.|...+. .+++.|++|+++|++++++.+.+..+|..++|.+++.+.+    
T Consensus        97 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~----  172 (434)
T PRK11663         97 ATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIAL----  172 (434)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence            99999999999999999999999999987776665 8999999999999999999999999999999999999987    


Q ss_pred             CCCcccccccccCccchhHHHHHHHHHHHH-HHHHhhccccccCCCCCCccchhhhhhhhhhhhhhhhhcccCCccc-cc
Q 017429          200 YPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPK-KS  277 (371)
Q Consensus       200 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  277 (371)
                                  .++|+..+++.++..++. ++..+++||++.+.......+. ..++.+.. ++.+.++.+..... ..
T Consensus       173 ------------~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~  238 (434)
T PRK11663        173 ------------HYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEW-RHDALELA-QQQEGAGLSRKEILTKY  238 (434)
T ss_pred             ------------cccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccc-cccccccc-hhccccCCChhhhHHHH
Confidence                        556677667766655443 3445567876643221111000 00000000 00000000000111 12


Q ss_pred             cccccchHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017429          278 LLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL  351 (371)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~  351 (371)
                      .++++.++...+..++......+...++|.|+.+.     +|++..+++...+...++..+++ ++.+++.||+
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-----~g~s~~~a~~~~~~~~~~~~~g~-~~~g~l~dr~  306 (434)
T PRK11663        239 VLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSET-----LGVDLVTANSAVSMFELGGFIGA-LVAGWGSDKL  306 (434)
T ss_pred             HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cCCCHHHHHHHHHHHHHHHHHHH-HHHhhhHHHh
Confidence            56678888877777776666677777889888655     79999999999999999999999 5889999998

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.96  E-value=7.7e-28  Score=217.93  Aligned_cols=280  Identities=16%  Similarity=0.130  Sum_probs=216.0

Q ss_pred             HHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHH
Q 017429           46 IWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF  125 (371)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~  125 (371)
                      +....++..++.....+.+|.+..+++.+..+      .+++.+++.++..+++++.|+++||+|||++++.+.++..++
T Consensus         4 l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~   77 (365)
T TIGR00900         4 LFAAQLISLIGTAITQVALPLYVLAGTGSASV------LSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVL   77 (365)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH------HHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHH
Confidence            44566677777778888899999999999988      999999999999999999999999999999999999998888


Q ss_pred             HHHHHhHH-----HHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCC
Q 017429          126 NTLFGLSV-----NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK  199 (371)
Q Consensus       126 ~~~~~~~~-----~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~  199 (371)
                      .++..+..     +++.+++.|++.|++.+...+. .+++.|++|+++|++.+++.+.+..+|..++|.+++.+.+    
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~----  153 (365)
T TIGR00900        78 VAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYA----  153 (365)
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----
Confidence            88888877     9999999999999998888886 9999999999999999999999999999999999999987    


Q ss_pred             CCCcccccccccCccchhHHHHHHHHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhhhhhhhhcccCCccccccc
Q 017429          200 YPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLL  279 (371)
Q Consensus       200 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (371)
                                  .++|+..+++.++..++..+..+..++++.+..++++.++..              ..+..+..+.++
T Consensus       154 ------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~  207 (365)
T TIGR00900       154 ------------TLGIKWAIWVDAVGFAISALLIVSVRIPELAASEIQALSNAV--------------LRDTREGIKFVL  207 (365)
T ss_pred             ------------HhhHHHHHHHHHHHHHHHHHHHHhcccccCCCccccccchhH--------------HHHHHhHHHHHH
Confidence                        556677667766655555444443332211111111000000              000112345677


Q ss_pred             cccchHHHHHHHHHHHhhhhhHH-HHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHH
Q 017429          280 KNWPLMSSIIVYCVFSLHDMAYS-EIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVAR  358 (371)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~  358 (371)
                      ++|.++......++......... .+.|.|..+.     +|.++.+.+.+....+++.+++.. +.+++.||.++++.+.
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~  281 (365)
T TIGR00900       208 KNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKY-----LGRGSTHYGWVLAAFGLGALLGAL-LLGLLGRYFKRMALMT  281 (365)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----hCCchHHHHHHHHHHHHHHHHHHH-HHHHHHHHhchhHHHH
Confidence            88888877777666666555554 6777777654     688999999999999999999884 7789999999998887


Q ss_pred             HHHHhhhhc
Q 017429          359 IAGVNFEHS  367 (371)
Q Consensus       359 ~~~~~~~~~  367 (371)
                      .+..+..++
T Consensus       282 ~~~~~~~~~  290 (365)
T TIGR00900       282 GAIFVIGLA  290 (365)
T ss_pred             HHHHHHHHH
Confidence            765544433

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.96  E-value=1.1e-27  Score=218.28  Aligned_cols=273  Identities=16%  Similarity=0.246  Sum_probs=213.1

Q ss_pred             HHHHHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHH
Q 017429           42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (371)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~  121 (371)
                      .++.+....++.........+.+|.+.+++|.+..+      .++..+++.++..+++++.|+++||+|||+++..+.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~------~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~   77 (382)
T PRK10091          4 VILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPA------AGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVAL   77 (382)
T ss_pred             hHHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHH------HhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHH
Confidence            455666777778888888889999999999999999      99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCC
Q 017429          122 VVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY  200 (371)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~  200 (371)
                      .+++.++++++++++.+++.|++.|++.+...+. ..++.|++|+++|+++++....+..+|..++|.+++.+.+     
T Consensus        78 ~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~-----  152 (382)
T PRK10091         78 CVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQ-----  152 (382)
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhh-----
Confidence            9999999999999999999999999998887775 8889999999999999999999999999999999999987     


Q ss_pred             CCcccccccccCccchhHHHHHHHHHHHHHH-HHhhccccccCCCCCCccchhhhhhhhhhhhhhhhhcccCCccccccc
Q 017429          201 PNLFSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLL  279 (371)
Q Consensus       201 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (371)
                                 .++|+..+.+.++..++..+ ..+.+||.+++.+  .   +..                    ...+.+
T Consensus       153 -----------~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~~~~--~---~~~--------------------~~~~~~  196 (382)
T PRK10091        153 -----------EFSWRYTFLLIAVFNIAVLASIYFWVPDIRDEAK--G---GLR--------------------EQFHFL  196 (382)
T ss_pred             -----------hccHHHHHHHHHHHHHHHHHHHHHhCCCCCcccc--c---CHH--------------------HHHHHh
Confidence                       55667666776665554433 3456777532110  0   000                    011234


Q ss_pred             cccchHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHH
Q 017429          280 KNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARI  359 (371)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~  359 (371)
                      +++..+......++.........++.+.+..+.     +|+++.+.+.+.+..+++.++++ ++.+++.||+++++.+..
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~s~~~~~~~~~~~~~~~~ig~-~~~g~l~~r~~~~~~~~~  270 (382)
T PRK10091        197 RSPAPWLIFAATMFGNAGVFAWFSYIKPYMMFI-----SGFSETSMTFIMMLVGLGMVLGN-LLSGRLSGRYSPLRIAAV  270 (382)
T ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHh-HHHheeccccCchhHHHH
Confidence            566665554444333333333334445555443     78999999999999999999999 588999999999998877


Q ss_pred             HHHhhhhc
Q 017429          360 AGVNFEHS  367 (371)
Q Consensus       360 ~~~~~~~~  367 (371)
                      +..+..++
T Consensus       271 ~~~~~~i~  278 (382)
T PRK10091        271 TDFIIVLA  278 (382)
T ss_pred             HHHHHHHH
Confidence            76665544

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.96  E-value=2.1e-27  Score=228.01  Aligned_cols=189  Identities=19%  Similarity=0.238  Sum_probs=162.6

Q ss_pred             HHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHH
Q 017429           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (371)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~  124 (371)
                      .+.++.+..++....+...+|.+.++++++..+      .+++.+++.++.+++++++|+++||+|||+++++++++.++
T Consensus       171 i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~------~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i  244 (742)
T TIGR01299       171 VLGLALMADGVEVFVVGFVLPSAEKDLCIPDSG------KGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGF  244 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            444555556666677888899999999999988      99999999999999999999999999999999999999999


Q ss_pred             HHHHHHhHHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCCCCc
Q 017429          125 FNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNL  203 (371)
Q Consensus       125 ~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~~~~  203 (371)
                      +.++++++++++.++++|++.|++.|...++ .++++|++|++.|++.+++...+..+|.++++.++..+..       .
T Consensus       245 ~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~-------~  317 (742)
T TIGR01299       245 FAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIP-------H  317 (742)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------h
Confidence            9999999999999999999999998887775 9999999999999999999999999999999999888775       4


Q ss_pred             cccccc----ccCccchhHHHHHHHHHHHHHHHHhhccccccCCCCC
Q 017429          204 FSSESL----FGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDD  246 (371)
Q Consensus       204 ~g~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~  246 (371)
                      +||+..    +...+||..+++.++..++.++..+++||+|++...+
T Consensus       318 ~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~  364 (742)
T TIGR01299       318 YGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLEN  364 (742)
T ss_pred             ccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHC
Confidence            455421    2245789888888888877778888999999875443

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.96  E-value=1.1e-27  Score=217.14  Aligned_cols=294  Identities=13%  Similarity=0.135  Sum_probs=213.2

Q ss_pred             HHHHHHHHHHhhcccccchhhHHH-HHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHH
Q 017429           43 LFSIWIIVLCTALPISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (371)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~  121 (371)
                      ++..++..++.........+..|. +.+++|++..+      .+++.+++.++..+++++.|+++||+|||+.++++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~   76 (366)
T TIGR00886         3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQ------LGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLL   76 (366)
T ss_pred             hHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHH------hhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence            445666777777777888899995 88999999999      99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhHH-HHHHHHHHHHHHhhhccchhHHHHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCC--
Q 017429          122 VVIFNTLFGLSV-NFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE--  198 (371)
Q Consensus       122 ~~~~~~~~~~~~-~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~--  198 (371)
                      .+++.+++++++ +++.+++.|++.|++.+...+...+++|++|+++|++++++......+|..+++.+++.+.....  
T Consensus        77 ~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~  156 (366)
T TIGR00886        77 LAIPCLWAGLAVQSYSVLLLLRLFIGIAGGSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFG  156 (366)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhchhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999 99999999999999876665568899999999999999999987778888877777766654110  


Q ss_pred             -CCCCcccccccccCccchhHH-HH-HHHHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhhhhhhhhcccCCccc
Q 017429          199 -KYPNLFSSESLFGKFPYFLPC-LC-ISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPK  275 (371)
Q Consensus       199 -~~~~~~g~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (371)
                       +.+...         +|+..+ +. ..+..+..++.....+|++++++++++.+..  +...   .    .+.......
T Consensus       157 ~~~~~~~---------~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~----~~~~~~~~~  218 (366)
T TIGR00886       157 AGLPAHL---------AWGWAFVIVPAGILLLPALLIFFVGADTPPGKPATGKLSFK--GARW---S----VGTGALGDQ  218 (366)
T ss_pred             ccccccc---------cccchhHHHHHHHHHHHHHHHHHhcccCCcccccchhcccc--cccc---c----ccchhHHHH
Confidence             000112         344444 22 2222233344445556655332111100000  0000   0    000011134


Q ss_pred             cccccccchHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhchhH
Q 017429          276 KSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIM  355 (371)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~  355 (371)
                      ++.+++|+++...+..++..........+.+.|..+.     +|+++.+++.+.....+..++++ ++.+++.||+++|+
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~-~~~g~l~~r~g~~~  292 (366)
T TIGR00886       219 LKVFRDRHTWILALLYSVTFGSFLGVSSIFAMFFKDQ-----FGLSKVTAGAYASLGGLLGSLAR-PLGGAISDRLGGAR  292 (366)
T ss_pred             HHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCcHHHHHHHHHHHHHHHHHHh-hccchHHHhhccch
Confidence            5677888888877777776666677778888888765     78999999998888888888888 58899999999987


Q ss_pred             HHHHHHHhhhh
Q 017429          356 VARIAGVNFEH  366 (371)
Q Consensus       356 ~~~~~~~~~~~  366 (371)
                      .+..+.....+
T Consensus       293 ~~~~~~~~~~~  303 (366)
T TIGR00886       293 KLLMSFLGVAM  303 (366)
T ss_pred             hHHHHHHHHHH
Confidence            76665544433

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.96  E-value=2.6e-27  Score=217.82  Aligned_cols=282  Identities=16%  Similarity=0.100  Sum_probs=214.4

Q ss_pred             CChhHHHHHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHH
Q 017429           38 LPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM  117 (371)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~  117 (371)
                      +++..++..+...++..++.....+..|.+.+++|.++.+      .+++.+++.++..+++++.|+++||+|||+++..
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~   85 (406)
T PRK11551         12 RLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQ------MGWAFSAGILGLLPGALLGGRLADRIGRKRILIV   85 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHH
Confidence            3445556677778888888888899999999999999999      9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCc
Q 017429          118 GTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP  196 (371)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~  196 (371)
                      +.++..++.+++.++++++.+++.|++.|++.+...+. .+++.|++|+++|++++++.+.+..+|..+++.+++.+.+ 
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-  164 (406)
T PRK11551         86 SVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAG-  164 (406)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-
Confidence            99999999888899999999999999999998887775 9999999999999999999999999999999999988876 


Q ss_pred             CCCCCCcccccccccCccchhHHHHHHHHHHHHH-HHHhhccccccCCCCCCccchhhhhhhhhhhhhhhhhcccCCccc
Q 017429          197 AEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPK  275 (371)
Q Consensus       197 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (371)
                                     ..+|+..+++.+++.++.. +..+++||++++..++.++++.  +                 ...
T Consensus       165 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~-----------------~~~  210 (406)
T PRK11551        165 ---------------DAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQR--A-----------------PVL  210 (406)
T ss_pred             ---------------ccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhh--h-----------------hhH
Confidence                           5566766676665544433 3455678876432221110000  0                 000


Q ss_pred             cccc---cccchHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 017429          276 KSLL---KNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILG  352 (371)
Q Consensus       276 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~  352 (371)
                      +..+   +.+..+.....+++..........+.|.+..+      .|+++.+.+...+..+++.++++ ++.+++.||.+
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~------~g~s~~~~~~~~~~~~~~~~~~~-~~~g~l~dr~g  283 (406)
T PRK11551        211 RALFGEGRATATLLLWISYFFTLIVLYFLLNWLPSLLVG------QGLSRSQAGLVQIAFNIGGALGS-LLIGALMDRLR  283 (406)
T ss_pred             HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CCCChhhhhHHHHHHHHHHHHHH-HHHHHHHHHHh
Confidence            0111   11222333333333334444556667777654      58899999999999999999998 58899999999


Q ss_pred             hhHHHHHHHHhhhhc
Q 017429          353 PIMVARIAGVNFEHS  367 (371)
Q Consensus       353 ~~~~~~~~~~~~~~~  367 (371)
                      +|+.+..+.+...++
T Consensus       284 ~~~~~~~~~~~~~~~  298 (406)
T PRK11551        284 PRRVVLLIYAGILAS  298 (406)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999887765544433

>PRK10504 putative transporter; Provisional

Probab=99.96  E-value=6.2e-27  Score=219.43  Aligned_cols=299  Identities=15%  Similarity=0.127  Sum_probs=225.5

Q ss_pred             hhHHHHHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHH
Q 017429           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (371)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~  119 (371)
                      .+.++.+++..++..++....++..|.+.+++|.+..+      .+++.+.+.++..++.++.|+++||+|||++++.+.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~------~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~   82 (471)
T PRK10504          9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLH------MHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAI   82 (471)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence            34566777788888888888899999999999999998      999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCC
Q 017429          120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE  198 (371)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~  198 (371)
                      ++.+++.+++.++++++.+++.|+++|++.+...+. .+++.|.+|+++|+++.++.+....+|..+||.+++.+.+   
T Consensus        83 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~---  159 (471)
T PRK10504         83 VLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVE---  159 (471)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh---
Confidence            999999888888999999999999999998888775 8999999999999999999999999999999999999988   


Q ss_pred             CCCCcccccccccCccchhHHHHHHHHHHHHHHH-HhhccccccCCCCCCccchhhhh---------hhhhhh-------
Q 017429          199 KYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPETLHRHNDDDDSCDVSYD---------ALESAS-------  261 (371)
Q Consensus       199 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~---------~~~~~~-------  261 (371)
                                   .++|+..+.+......+..+. ....|+.+.... +.+.......         ..++..       
T Consensus       160 -------------~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (471)
T PRK10504        160 -------------YASWHWIFLINIPVGIIGAIATLMLMPNYTMQTR-RFDLSGFLLLAVGMATLTLALDGSKGLGLSPL  225 (471)
T ss_pred             -------------hccHHHHHHHHHHHHHHHHHHHHHhCCCccccCC-CCChHHHHHHHHHHHHHHHHHhcCCcCCcchH
Confidence                         455666666665554444333 344444332211 1110000000         000000       


Q ss_pred             ---------------hhhhhhcccCCccccccccccchHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhh
Q 017429          262 ---------------AEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVG  326 (371)
Q Consensus       262 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  326 (371)
                                     ...++.....+....++++||+++...+..++..........+.|.|.+..     +|.++.+.+
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~g  300 (471)
T PRK10504        226 AIAGLVAVGVVALLLYLLHARNNNRALFSLKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIG-----LGFSPFHAG  300 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCHHHHH
Confidence                           000111111222234578999988887777777666666666778887654     788999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHhhhhc
Q 017429          327 EVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVNFEHS  367 (371)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~  367 (371)
                      +......++.+++. ++.+++.||+++|+.+..+.++..++
T Consensus       301 ~~~~~~~~~~~~~~-~~~~~l~~r~g~~~~~~~~~~~~~~~  340 (471)
T PRK10504        301 LMMIPMVLGSMGMK-RIVVQVVNRFGYRRVLVATTLGLALV  340 (471)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHcCchHHHHHHHHHHHHH
Confidence            99988888888776 47889999999999988777755543

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.96  E-value=4.2e-27  Score=219.86  Aligned_cols=284  Identities=12%  Similarity=0.097  Sum_probs=205.8

Q ss_pred             hhHHHHHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHH
Q 017429           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (371)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~  119 (371)
                      ++.+...+...++.........+..|.+.+++|++..+      .+++.+.+.+++.+++++.|+++||+|||+++..+.
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~------~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~  108 (476)
T PLN00028         35 MRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSD------IGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLL  108 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHH
Confidence            34455566666666666677788899999999999999      999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHhhhccchhHHHHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCC
Q 017429          120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK  199 (371)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~  199 (371)
                      ++.+++.++++++++++.+++.|++.|++.+...+...+++|++|+++|++++++.+....+|..+++.+.+.+......
T Consensus       109 ~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~  188 (476)
T PLN00028        109 MLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFVSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKD  188 (476)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999998776555667889999999999999999877777777776666554321000


Q ss_pred             CCCcccccccccCccchhHHHHHHHHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhhhhhhhhcccCCccccccc
Q 017429          200 YPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLL  279 (371)
Q Consensus       200 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (371)
                      .    +.   -...+||..+++.+++.++..+..+++++++++...+    +..     +.   .+.++.+....+++.+
T Consensus       189 ~----~~---~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~~~~~----~~~-----~~---~~~~~~~~~~~~~~~~  249 (476)
T PLN00028        189 A----GA---PSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPDGNYR----ELK-----KS---GTMPKDSFSKVLRYGV  249 (476)
T ss_pred             c----CC---cchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCCCchh----hHH-----hc---CccccccHHHHHHHHH
Confidence            0    00   0023567777777776665555444454432211100    000     00   0000001112345567


Q ss_pred             cccchHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 017429          280 KNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPI  354 (371)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~  354 (371)
                      +++++|...+.+++..........+.|.|+.+.     +|++..+++.+.+..+++.++++ ++.+++.||+++|
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-----~g~s~~~a~~~~~~~~~~~~ig~-~~~G~lsDr~~~r  318 (476)
T PLN00028        250 TNYRTWILALTYGYSFGVELTMDNIIAEYFYDR-----FGLSLETAGAIAASFGLMNLFAR-PAGGYLSDVAARR  318 (476)
T ss_pred             cCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHh
Confidence            788888777776666555566677788887654     79999999999999999999999 5889999999865

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.96  E-value=2.9e-27  Score=217.17  Aligned_cols=264  Identities=14%  Similarity=0.173  Sum_probs=209.4

Q ss_pred             HHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHH
Q 017429           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (371)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~  124 (371)
                      .+.+..+...+......|.+|.+.++++.+..+      .++..+++.+++.+++++.|+++||+|||++++.+.++.++
T Consensus        20 ~~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~------~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~   93 (413)
T PRK15403         20 ALILYDFAAYLTTDLIQPGIINVVRDFNADVSL------APASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTL   93 (413)
T ss_pred             HHHHHHHHHHHHHHhhccCHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHH
Confidence            344555666677888899999999999999999      99999999999999999999999999999999999999999


Q ss_pred             HHHHHHhHHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCCCCc
Q 017429          125 FNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNL  203 (371)
Q Consensus       125 ~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~~~~  203 (371)
                      +.+++.++++++.++++|+++|++.+...+. ..++.|.+|+++|++++++......+|..+||.+++.+.+        
T Consensus        94 ~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~--------  165 (413)
T PRK15403         94 ACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMH--------  165 (413)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence            9999999999999999999999987765555 7889999999999999999999999999999999999987        


Q ss_pred             ccccccccCccchhHHHHHHHHHHHHHHH-HhhccccccCCCCCCccchhhhhhhhhhhhhhhhhcccCCcccccccccc
Q 017429          204 FSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNW  282 (371)
Q Consensus       204 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (371)
                              .++|+..|++.++..++..+. .+++||++++++++.+ .+                  ...+.++++++||
T Consensus       166 --------~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~~~~~~~~-~~------------------~~~~~~~~ll~~~  218 (413)
T PRK15403        166 --------FVHWKVLFAIIAVMGLIAFVGLLLAMPETVKRGAVPFS-AK------------------SVLRDFRNVFRNR  218 (413)
T ss_pred             --------hcCHHHHHHHHHHHHHHHHHHHHHhCCCCccccCCCCC-hH------------------HHHHHHHHHHcCH
Confidence                    556777777777766665543 5567886542111100 00                  0012456778999


Q ss_pred             chHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 017429          283 PLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPI  354 (371)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~  354 (371)
                      .++...+..++.......+..+.|.++.+.     +|+++.+.++.......+..++......+..|+.++|
T Consensus       219 ~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~-----~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~  285 (413)
T PRK15403        219 LFLTGAATLSLSYIPMMSWVAVSPVILIDA-----GGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPR  285 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhChHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchh
Confidence            999888877777766677777778887765     7899999999988777787777754444444554444

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.96  E-value=3.7e-27  Score=216.72  Aligned_cols=276  Identities=17%  Similarity=0.148  Sum_probs=214.7

Q ss_pred             HHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHH
Q 017429           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (371)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~  124 (371)
                      .+.+..++..+....+.+.+|.+.+++|.+..+      .++..+.+.++..+++++.|+++||+|||+++..+.++.++
T Consensus        17 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~   90 (406)
T PRK15402         17 CLVLFEFATYIANDMIQPGMLAVVEDFNAGAEW------VPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFIL   90 (406)
T ss_pred             HHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence            455556666677888889999999999999998      99999999999999999999999999999999999999999


Q ss_pred             HHHHHHhHHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCCCCc
Q 017429          125 FNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNL  203 (371)
Q Consensus       125 ~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~~~~  203 (371)
                      +.+.+..+++++.+++.|++.|++.+...+. .+++.|.+|+++|.+..++......+|..++|.+++.+.+        
T Consensus        91 ~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~--------  162 (406)
T PRK15402         91 TCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIH--------  162 (406)
T ss_pred             HHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence            9999999999999999999999998887665 8999999999999999999888888899999999999887        


Q ss_pred             ccccccccCccchhHHHHHHHHHHHHHH-HHhhccccccCCCCCCccchhhhhhhhhhhhhhhhhcccCCcccccccccc
Q 017429          204 FSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNW  282 (371)
Q Consensus       204 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (371)
                              ..+|+..+++.++..++..+ ..+..||++++..++.+. +                  +.....+.++++|
T Consensus       163 --------~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------------------~~~~~~~~~~~~~  215 (406)
T PRK15402        163 --------VLPWRGMFVLFAALAALSFFGLWRAMPETAGRVGEKLSL-K------------------ELGRDYKLVLKNR  215 (406)
T ss_pred             --------ccCccHHHHHHHHHHHHHHHHHHHhCCCCCccccccccH-H------------------HHHHHHHHHHcCc
Confidence                    44556666666665555444 344567664322111000 0                  0012345678888


Q ss_pred             chHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHH
Q 017429          283 PLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGV  362 (371)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~  362 (371)
                      +++...+..++.......+....|.+..+.     +|+++.+.+.......++.+++. ++.+++.||.++|+.+..+.+
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-----~g~~~~~~g~~~~~~~~~~~~g~-~~~g~l~~r~~~~~~~~~~~~  289 (406)
T PRK15402        216 RFVAGALALGLVSLPLLAWIALSPVILISG-----EQLSSYEYGLLQVPVFGALIAGN-LTLARLTSRRPLRSLIRMGLW  289 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCHHHHHHHHHH
Confidence            888777766666555555666667766554     78899999988777777777777 578999999999998877766


Q ss_pred             hhhhc
Q 017429          363 NFEHS  367 (371)
Q Consensus       363 ~~~~~  367 (371)
                      +..++
T Consensus       290 ~~~~g  294 (406)
T PRK15402        290 PMVAG  294 (406)
T ss_pred             HHHHH
Confidence            55443

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.96  E-value=2.5e-27  Score=222.52  Aligned_cols=298  Identities=14%  Similarity=0.105  Sum_probs=205.4

Q ss_pred             hHHHHHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHH-HHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHH
Q 017429           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGY-VGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (371)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~  119 (371)
                      +.+...++..++..++...+....|.+.++++.+.++.. .....+ ..++..++..++++++|+++||+|||+++.++.
T Consensus        16 ~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~   94 (490)
T PRK10642         16 KAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSV-QMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITI   94 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            445567788889999999999999999999876543310 100111 247788999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhHHHHHH--------HHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhh
Q 017429          120 ASVVIFNTLFGLSVNFWM--------AVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG  190 (371)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~--------~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~  190 (371)
                      ++++++.+++++++++..        +++.|+++|++.|...+. .++++|++|+++|++..++...+..+|..+|+.+.
T Consensus        95 ~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~  174 (490)
T PRK10642         95 VIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVV  174 (490)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999998864        889999999998887775 99999999999999999999888888888887766


Q ss_pred             hhhcCcCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhhhhhhhhccc
Q 017429          191 GFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGR  270 (371)
Q Consensus       191 ~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (371)
                      ..+......        .....++||.+|++.++..++.++....+||+|++...+++.++.        ..+..  .+.
T Consensus       175 ~~~~~~~~~--------~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~--------~~~~~--~~~  236 (490)
T PRK10642        175 VLISTIVGE--------ANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQG--------DREGL--QDG  236 (490)
T ss_pred             HHHHHhcCH--------HHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhh--------ccccc--ccc
Confidence            554321100        000156788888887766665555666788887542111000000        00000  001


Q ss_pred             CCccccccccc-cchHH-HHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 017429          271 EATPKKSLLKN-WPLMS-SIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLE  348 (371)
Q Consensus       271 ~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~  348 (371)
                      ...++++++++ ++.+. .....++.....+....+.|.|+...     +|++..+.+.......++.+++. ++.+++.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-----~g~s~~~~~~~~~~~~~~~~~~~-~~~g~l~  310 (490)
T PRK10642        237 PKVSFKEIATKHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHN-----LHYSEDHGVLIIIAIMIGMLFVQ-PVMGLLS  310 (490)
T ss_pred             ccCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence            12234444442 22222 22222333344556667788887654     68888777777777777788877 5789999


Q ss_pred             HHhchhHHHHHHHHh
Q 017429          349 RILGPIMVARIAGVN  363 (371)
Q Consensus       349 ~r~~~~~~~~~~~~~  363 (371)
                      ||+|||+.+..+.+.
T Consensus       311 dr~grr~~~~~~~~~  325 (490)
T PRK10642        311 DRFGRRPFVILGSVA  325 (490)
T ss_pred             HHhccHHHHHHHHHH
Confidence            999999988776543

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.96  E-value=6.3e-27  Score=213.88  Aligned_cols=258  Identities=13%  Similarity=0.059  Sum_probs=201.3

Q ss_pred             ccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHHhHHHHHH
Q 017429           58 SSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWM  137 (371)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~  137 (371)
                      ....+.+|.+.+|+|+|..+      .++..+.+.+++.+++++.|+++||+|||+++..+..+.+++.+.++++++++.
T Consensus        26 ~~~~~~lp~i~~~~~~s~~~------~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~   99 (393)
T PRK09705         26 TSVGPLLPQLRQASGMSFSV------AALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSAL   99 (393)
T ss_pred             hccchhHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHH
Confidence            56779999999999999999      999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCCCCcccccccccCccch
Q 017429          138 AVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYF  216 (371)
Q Consensus       138 ~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~~~~~g~~~~~~~~~~~  216 (371)
                      +++.|+++|++.+...+. ..++.|++| ++|+++++.+..+...|..+++.+++.+.+.               ..+|+
T Consensus       100 ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~---------------~~~w~  163 (393)
T PRK09705        100 LLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQH---------------SETWY  163 (393)
T ss_pred             HHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHh---------------cCCHH
Confidence            999999999998887775 888999987 7799999999999999999999999988762               12455


Q ss_pred             hHHHHHHHHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhhhhhhhhcccCCccccccccccchHHHHHHHHHHHh
Q 017429          217 LPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSL  296 (371)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (371)
                      ..+...++..++.++..+...+.+++  ++++                   +   +...++.+++++.+...+.+++...
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-------------------~---~~~~~~~l~~~~~~~l~~~~~~~~~  219 (393)
T PRK09705        164 QTLAWWALPAVVALFAWWWQSAREVA--SSHK-------------------T---TTTPVRVVFTPRAWTLGVYFGLING  219 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCc--cccC-------------------C---CcCCcccccCHhHHHHHHHHHHHHH
Confidence            44444333333333322222211110  0000                   0   0112345567777776666666666


Q ss_pred             hhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHhhhhcc
Q 017429          297 HDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVNFEHSV  368 (371)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~  368 (371)
                      ...+...+.|.|+.+      +|+++.+++...+..+++.++++. +.+++.||.++|+.+..+..+..++.
T Consensus       220 ~~~~~~~~lp~~l~~------~g~s~~~ag~~~~~~~i~~i~g~~-~~g~l~~r~~~~~~~~~~~~l~~~~~  284 (393)
T PRK09705        220 GYASLIAWLPAFYIE------IGASAQYSGSLLALMTLGQAAGAL-LMPAMARHQDRRKLLMLALVLQLVGF  284 (393)
T ss_pred             HHHHHHHHHHHHHHH------cCCChhhhhHHHHHHHHHHHHHHH-HHHHHHhhccchHHHHHHHHHHHHHH
Confidence            666777788888754      588999999999999999999994 78999999999988877766655443

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.96  E-value=1.4e-27  Score=215.20  Aligned_cols=278  Identities=25%  Similarity=0.421  Sum_probs=212.8

Q ss_pred             HHHHHHhhcccccchhhHH-HHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHH
Q 017429           47 WIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF  125 (371)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~  125 (371)
                      ++..++..+......+..| .+.+++|.+..+      .+++.+++.++..+++++.|+++||+|||+++..+.++.+++
T Consensus         2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~   75 (352)
T PF07690_consen    2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQ------IGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALG   75 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHC------HHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhH
Confidence            4566677777777889999 889999999999      999999999999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCCCCcc
Q 017429          126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLF  204 (371)
Q Consensus       126 ~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~~~~~  204 (371)
                      .++..++++.+.+++.|++.|++.+...+. ..++.|++|+++|++++++.+.+..+|..++|.+++.+.+         
T Consensus        76 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~---------  146 (352)
T PF07690_consen   76 SLLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLIS---------  146 (352)
T ss_dssp             HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC---------
T ss_pred             HHHhhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhh---------
Confidence            666666677779999999999998888776 9999999999999999999999999999999999999987         


Q ss_pred             cccccccCccchhHHHHHHHHHHHHHHH-HhhccccccCCCCCCccchhhhhhhhhhhhhhhhhcccCCc-ccccccccc
Q 017429          205 SSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREAT-PKKSLLKNW  282 (371)
Q Consensus       205 g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  282 (371)
                             .++|+..+++.++..++..+. .+++++++++...+++.++.             +++++... .++.+++++
T Consensus       147 -------~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~  206 (352)
T PF07690_consen  147 -------YFGWRWAFLISAILSLIAAILFILFLPEPPPPRERESPKESE-------------SKKPKPLKPGFKSLFKNP  206 (352)
T ss_dssp             -------HCHHCCHHHHHHHHHHHHHHHHHCCC---STTTT--SSTTTT---------------HHHCCCH-CTHHHHHH
T ss_pred             -------ccccccccccccchhhhhhhhHhhhhhhcccccccccccccc-------------cccccccccccccccccc
Confidence                   555666667777777666543 35555554443332221110             00011112 366677777


Q ss_pred             chHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCcccc-chhhhHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHH
Q 017429          283 PLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYS-TQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG  361 (371)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~  361 (371)
                      .+|......++..........+.|.|+.+.     +|++ ..+.+.+....++...++. ++.+++.||+++++......
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~  280 (352)
T PF07690_consen  207 VLWILLIAFFLFFFVFSGFSFFLPLYLQEV-----LGFSGPSQAGLLFSIFGIVGIIGS-LLAGRLSDRFGRRRRLLIAI  280 (352)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHCCHH-----HHCCTHHHHHHHHHHHHHHHHHHH-HHHHHHHHHTTCHHHHHHHH
T ss_pred             hhhhhhhhhhHHHHHHHHhhcccchhhhhc-----cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCcHHHHHHHH
Confidence            777555555655556666778888876555     7888 7899999999999999988 57889999999876665544


Q ss_pred             Hhhh
Q 017429          362 VNFE  365 (371)
Q Consensus       362 ~~~~  365 (371)
                      ....
T Consensus       281 ~~~~  284 (352)
T PF07690_consen  281 LLLI  284 (352)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4433

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.96  E-value=1e-27  Score=218.13  Aligned_cols=274  Identities=16%  Similarity=0.161  Sum_probs=209.0

Q ss_pred             HHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHH
Q 017429           50 VLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLF  129 (371)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~  129 (371)
                      .+..........+..|.+.+++|.+..+      .+++.+++.++..+++++.|+++||+|||++++.+.++.+++.+++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~   77 (379)
T TIGR00881         4 YAAYYLVRKNFALAMPYLVEEIGLSKTD------LGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFF   77 (379)
T ss_pred             hhHHHHhHHhhhhhhHHHHHHhCCCHhH------HHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHH
Confidence            4455666777788889999999999999      9999999999999999999999999999999999999999999999


Q ss_pred             HhHHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHH-hhhhhhcCcCCCCCCccccc
Q 017429          130 GLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGP-ALGGFLAQPAEKYPNLFSSE  207 (371)
Q Consensus       130 ~~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~-~i~~~l~~~~~~~~~~~g~~  207 (371)
                      +++++++.+++.|++.|++.+...+. .+++.|++|+++|++++++.+.+..+|..++| .+++.+.+            
T Consensus        78 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~------------  145 (379)
T TIGR00881        78 GFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAE------------  145 (379)
T ss_pred             HHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHh------------
Confidence            99999999999999999998887775 99999999999999999999999999999999 56666665            


Q ss_pred             ccccCccchhHHHHHHHHHHHH-HHHHhhccccccCCCCCCccchhhhhhhhhhhhhhhhhcccCCccccccccccchHH
Q 017429          208 SLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMS  286 (371)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (371)
                          ..+|+..+++.+++.++. ++..++.||++++...++++++.. ++.+...++.+++....+...++++++|.++.
T Consensus       146 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (379)
T TIGR00881       146 ----LYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEMPN-EEPDGDAEKKEEELTKKQIFLQYVLLNKVLWY  220 (379)
T ss_pred             ----cCCchhHHHHHHHHHHHHHHHHheeeCCCccccccCccccCcc-cccccccccccccccchHHHHHHHHhcchHHH
Confidence                445666666666555443 444556676654322111111100 00000000011111111223456778898888


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 017429          287 SIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILG  352 (371)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~  352 (371)
                      ..+..++..........+.|.|..+.     +|+++.+.+...+...++.+++. ++.+++.||..
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~-~~~g~l~~r~~  280 (379)
T TIGR00881       221 ISLGYVFVYVVRTGILDWSPLYLTQE-----KGFSKEKASWAFTLYELGGLVGT-LLAGWLSDKLF  280 (379)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCHHHHHHHHHHHHHHcchhH-HHHHHHHHHHc
Confidence            88887777777777888888888765     78999999999999999999988 47889999753

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.96  E-value=4.5e-27  Score=213.75  Aligned_cols=264  Identities=13%  Similarity=0.095  Sum_probs=201.3

Q ss_pred             cccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHHhHHHHH
Q 017429           57 ISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFW  136 (371)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~  136 (371)
                      .....+..|.+.+++|+++.+      .+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++++++++++
T Consensus        19 ~~~~~~~~~~~~~~~~~s~~~------~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~   92 (377)
T TIGR00890        19 VYTWTLLAPPLGRYFGVGVTA------VAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLA   92 (377)
T ss_pred             HhhhhhHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHH
Confidence            456678899999999999999      99999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCCCCcccccccccCccc
Q 017429          137 MAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPY  215 (371)
Q Consensus       137 ~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~~~~~g~~~~~~~~~~  215 (371)
                      .+++.|++.|++.+...+. ...+.|++| ++|+++.++...+..+|..+++.+.+.+.+                .++|
T Consensus        93 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----------------~~~~  155 (377)
T TIGR00890        93 ALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVIN----------------LEGV  155 (377)
T ss_pred             HHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHh----------------cccH
Confidence            9999999999998876654 777888887 579999999999999998877666666665                4567


Q ss_pred             hhHHHHHHHHHHHHHHH-HhhccccccCCCCCCccchhhhhhhhhhhhhhhhhcccCCccccccccccchHHHHHHHHHH
Q 017429          216 FLPCLCISLFAFGVTIA-AFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVF  294 (371)
Q Consensus       216 ~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (371)
                      +..+++.++..++..+. .++++|++++...++++.                  +......++.++++.++...+..++.
T Consensus       156 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (377)
T TIGR00890       156 PAAFIYMGIIFLLVIVLGAFLIGYPPGQLIKTNIEV------------------SVKDYTVWEMLRTPQFWVLYLSFFLN  217 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHheecCchhccccCccc------------------chhhhhHHHHHcCccHHHHHHHHHHH
Confidence            77777777666655443 445554432211110000                  00011334567788887776666655


Q ss_pred             HhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHhhhhcc
Q 017429          295 SLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVNFEHSV  368 (371)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~  368 (371)
                      .........+.+.|..+      +|.+..+.+.+.+...++.++++ ++.+++.||++||+.+..+.++..++.
T Consensus       218 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-~~~g~l~dr~g~~~~~~~~~~~~~~~~  284 (377)
T TIGR00890       218 AVSGLLLIGLYKPYGQS------LGLSDGFLVLAVSISSIFNGGGR-PFLGALSDKIGRQKTMSIVFGISAVGM  284 (377)
T ss_pred             hHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence            55544454555555433      67888889999999999999988 588999999999998877766655543

>PRK03699 putative transporter; Provisional

Probab=99.96  E-value=1.2e-26  Score=212.29  Aligned_cols=277  Identities=12%  Similarity=0.135  Sum_probs=212.8

Q ss_pred             hhHHHHHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHH
Q 017429           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (371)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~  119 (371)
                      ++..+..++..++.........+.+|.+.+++|++.++      .+++.+.+.++..+++++.|++.||+|||+++..+.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~------~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~   79 (394)
T PRK03699          6 IKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSS------MSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGF   79 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            34555666677777777778888999999999999999      999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCC
Q 017429          120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE  198 (371)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~  198 (371)
                      ++.+++.++++++++++.+++.|++.|++.+...+. ..++.|++|+++|+++++..+....+|..++|.+.+.+...  
T Consensus        80 ~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~--  157 (394)
T PRK03699         80 ALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLAR--  157 (394)
T ss_pred             HHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence            999999999999999999999999999988876664 88999999999999999998888899999999998887641  


Q ss_pred             CCCCcccccccccCccchhHHHHHHHHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhhhhhhhhcccCCcccccc
Q 017429          199 KYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSL  278 (371)
Q Consensus       199 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (371)
                                   .++||.++.+.++..++..+..++ ++.|+.+++++   ++.              ++    ..+. 
T Consensus       158 -------------~~gw~~~f~~~~~~~~~~~~~~~~-~~~p~~~~~~~---~~~--------------~~----~~~~-  201 (394)
T PRK03699        158 -------------SIEWYWVYACIGLVYVAIFILTLF-SEFPALGKHAP---KAD--------------KP----VAKE-  201 (394)
T ss_pred             -------------cccHHHHHHHHHHHHHHHHHHHHh-cCCccccccCc---ccc--------------Cc----cccc-
Confidence                         346677667666655544443332 22221111000   000              00    0011 


Q ss_pred             ccccchHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHH
Q 017429          279 LKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVAR  358 (371)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~  358 (371)
                      ..++.++...+..++..........+.|.|+.+.     +|+++.+.+.+.+...++..+++ ++.+++.||+++|+.+.
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-----~g~s~~~~~~~~~~~~~~~~ig~-~~~g~l~dr~~~~~~l~  275 (394)
T PRK03699        202 KWGIGVLFLAIAALLYILAQLTFISWVPEYAQKK-----FGMSLEDAGNLVSNFWMAYMVGM-WIFSFIVRFFDLQRILT  275 (394)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCChHHhhHHHHHHHHHHHHHH-HHHHHHHHHhchhhHHH
Confidence            1235566666666666666677788899888665     79999999999999999999988 58899999999998887


Q ss_pred             HHHHhhhh
Q 017429          359 IAGVNFEH  366 (371)
Q Consensus       359 ~~~~~~~~  366 (371)
                      .+..+..+
T Consensus       276 ~~~~~~~~  283 (394)
T PRK03699        276 VLAGLALV  283 (394)
T ss_pred             HHHHHHHH
Confidence            66554433

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.95  E-value=1.6e-26  Score=209.98  Aligned_cols=287  Identities=11%  Similarity=0.055  Sum_probs=209.4

Q ss_pred             ChhHHHHHHHHHHHhhcccccchhhHHHHHH-hhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHH
Q 017429           39 PITELFSIWIIVLCTALPISSLFPFLYFMIK-DFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM  117 (371)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~  117 (371)
                      .+|.++..++..++........++..+.+.+ ++|++.+|      .+++.+++.+++.++.++.|++.||+|.|+++.+
T Consensus        32 a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q------~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~  105 (462)
T PRK15034         32 ARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQ------LFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVF  105 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHH
Confidence            3467777788888888888888998888876 89999999      9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhH-----HHHHHHHHHHHHHhhhccchhHHHHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhh
Q 017429          118 GTASVVIFNTLFGLS-----VNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGF  192 (371)
Q Consensus       118 ~~~~~~~~~~~~~~~-----~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~  192 (371)
                      +.++..+..+..+++     ++++.+++.|++.|++.+...+....+++++|+++||+++|+.....++|..+++++...
T Consensus       106 ~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gigg~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~  185 (462)
T PRK15034        106 STAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFAGANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPL  185 (462)
T ss_pred             HHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            999999999988886     799999999999999855444459999999999999999999976666677665555544


Q ss_pred             hcCcCCCCCCccccccccc----CccchhHHHHHHHHHHHHHHH-HhhccccccCCCCCCccchhhhhhhhhhhhhhhhh
Q 017429          193 LAQPAEKYPNLFSSESLFG----KFPYFLPCLCISLFAFGVTIA-AFWLPETLHRHNDDDDSCDVSYDALESASAEVKEE  267 (371)
Q Consensus       193 l~~~~~~~~~~~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (371)
                      +....  .-..+||+....    ..+|+...++..+..++..+. ++++++.+. .  +.                    
T Consensus       186 ~i~~~--l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~-~--~~--------------------  240 (462)
T PRK15034        186 VIFVP--VFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS-S--RA--------------------  240 (462)
T ss_pred             HHHHH--HHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-c--cc--------------------
Confidence            33100  000233333221    233666555555555544443 444443321 1  00                    


Q ss_pred             cccCCccccccccccchHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 017429          268 EGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFL  347 (371)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l  347 (371)
                         ..+..+..+|+|+.|...+.+++......++..++|.|..+.     +  +............+...+.+ +++|++
T Consensus       241 ---~~~~~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~-----~--~~~~~l~~~~l~~l~~~l~r-plgG~L  309 (462)
T PRK15034        241 ---SIADQLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQ-----F--PDVNILRLAFFGPFIGAIAR-SVGGAI  309 (462)
T ss_pred             ---CHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----c--ChHHHHHHHHHHHHHHHHHH-HhhHHH
Confidence               012345688999999999999999988888988999887653     2  22222222333445666666 689999


Q ss_pred             HHHhchhHHHHHHHHhhhhc
Q 017429          348 ERILGPIMVARIAGVNFEHS  367 (371)
Q Consensus       348 ~~r~~~~~~~~~~~~~~~~~  367 (371)
                      +||+|+++++..+++...++
T Consensus       310 ADRiG~~~vl~~~~i~~~i~  329 (462)
T PRK15034        310 SDKFGGVRVTLINFIFMAIF  329 (462)
T ss_pred             HHhcCchHHHHHHHHHHHHH
Confidence            99999999998887765554

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.95  E-value=1.4e-27  Score=203.44  Aligned_cols=277  Identities=41%  Similarity=0.666  Sum_probs=206.0

Q ss_pred             cccchhhHHHHHHhhcccccccc--chhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHHhHHH
Q 017429           57 ISSLFPFLYFMIKDFQIAKREED--IGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVN  134 (371)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~  134 (371)
                      .....++...+.++|+....+.+  ...+.|.+.+.+.+.+++.++.+|.++||+|||++++++++..++...+.+.+.|
T Consensus        41 ~~~L~~~~~~~V~~F~~a~~~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~  120 (451)
T KOG2615|consen   41 VSSLYPFVVFMVRDFNIAIGEPDGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRN  120 (451)
T ss_pred             ccchhHHHHHhhHHHHHhhCCcccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555566666677766544433  6678999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhccchhHHHHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCCCCcccccccccCcc
Q 017429          135 FWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFP  214 (371)
Q Consensus       135 ~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~~~~~g~~~~~~~~~  214 (371)
                      +..++++|++.|+..|-..++.++++|.+++++|+.+++..+.++++|.++||.|||++....          ..++.+.
T Consensus       121 F~afv~aR~l~Gi~kgnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~----------~~~g~~p  190 (451)
T KOG2615|consen  121 FAAFVLARFLGGIFKGNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFS----------SISGSYP  190 (451)
T ss_pred             HHHHHHHHHhhhhccCchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhH----------hhhccCc
Confidence            977888899999999999999999999999999999999999999999999999999998711          1122445


Q ss_pred             chhHHHHHHHHHHH-HHHHHhhccccccCCCCCCccchhhhhhhhhhhhhhhhhcccCCccccccccccchHHHHHHHHH
Q 017429          215 YFLPCLCISLFAFG-VTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCV  293 (371)
Q Consensus       215 ~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (371)
                      +..|.++..+.+.. .....+++||+-+.++++ ++.....+..+.+    ++............++|++....+..+..
T Consensus       191 ~alP~~~v~i~a~~~v~~~~~~lpETL~~rk~~-~~~~~~~~~~~~~----~~~~~~~~~~~v~~lrn~p~~~~i~~~~i  265 (451)
T KOG2615|consen  191 FALPCLLVFILAAGDVTFFPWFLPETLPLRKRN-DEHSTLQEAADDR----LALLKFARIFKVAALRNPPLLDFISVLRI  265 (451)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhCCccccchhhc-ccccchhhhhhhh----hhhcchhhhhhhhhhcCccccchHHHHHH
Confidence            55555555555555 456678999997665554 2111111111111    11011112223345677776666666666


Q ss_pred             HHhhhhhHHHHHHHHhcCCCcc--CCccccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 017429          294 FSLHDMAYSEIFSLWANSPKKL--GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLE  348 (371)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~  348 (371)
                      +....+.+..+++.|.......  +++|+++.+.|.+++..++.+.+.+..+.+++.
T Consensus       266 ~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~  322 (451)
T KOG2615|consen  266 FGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILP  322 (451)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhcccccc
Confidence            6666677777777776666555  669999999999999999999998865544443

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.95  E-value=4.5e-26  Score=207.63  Aligned_cols=272  Identities=15%  Similarity=0.157  Sum_probs=205.3

Q ss_pred             hHHHHHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHH
Q 017429           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (371)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~  120 (371)
                      +.++.+....++.........+.+|.+.+++|.++.+      .|++.+.+.++..+++++.|+++||+|||+++..+.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~------~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~   79 (381)
T PRK03633          6 RPVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQ------VGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASL   79 (381)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            4566777888888899999999999999999999999      9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCC
Q 017429          121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK  199 (371)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~  199 (371)
                      +.+++..+++++++++.+++.|++.|++.+...+. ...+.+..++++|+++++..+.+..+|..+||.+++.+.+.   
T Consensus        80 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~---  156 (381)
T PRK03633         80 IFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTE---  156 (381)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc---
Confidence            99999999999999999999999999998887775 77778889999999999999999999999999999998761   


Q ss_pred             CCCcccccccccCccchhHHHHHHHHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhhhhhhhhcccCCccccccc
Q 017429          200 YPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLL  279 (371)
Q Consensus       200 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (371)
                          ..+     ...|..    .... ... +..++.+.+++..+ + +                      ...+.++.+
T Consensus       157 ----~~~-----~~~~~~----~~~~-~~~-~~~~~~~~~~~~~~-~-~----------------------~~~~~~~~~  197 (381)
T PRK03633        157 ----LMS-----VLPWVT----GLVL-AAI-LPLLFTRILNQQAE-N-H----------------------DSTSIWPML  197 (381)
T ss_pred             ----ccc-----hHHHHH----HHHH-HHH-HHHHHhcccCCCCC-C-C----------------------CCCCHHHHH
Confidence                100     112221    1111 111 11122121111100 0 0                      011234456


Q ss_pred             cccchHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHH
Q 017429          280 KNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARI  359 (371)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~  359 (371)
                      ++|.++......+...........++|.|..+      .|.++.+.+.+.+...++.++++. ..+++.||+++|+.+..
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~------~g~s~~~~g~~~~~~~~~~~~~~~-~~g~l~dr~~~~~~l~~  270 (381)
T PRK03633        198 KLRQARLGVNGCIISGIVLGSLYGLMPLYLNH------QGMSDASIGFWMALLVSAGILGQW-PIGRLADRFGRLLVLRV  270 (381)
T ss_pred             HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHHHHHHHHHHHh-hhHHHHHHcCcHHHHHH
Confidence            77776654443443333444556677877754      588888999999999899999984 78999999999998877


Q ss_pred             HHHhhhhc
Q 017429          360 AGVNFEHS  367 (371)
Q Consensus       360 ~~~~~~~~  367 (371)
                      +.....++
T Consensus       271 ~~~~~~~~  278 (381)
T PRK03633        271 QVFVVILG  278 (381)
T ss_pred             HHHHHHHH
Confidence            66665544

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.95  E-value=2.7e-26  Score=210.01  Aligned_cols=275  Identities=21%  Similarity=0.221  Sum_probs=209.9

Q ss_pred             HHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHH
Q 017429           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (371)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~  124 (371)
                      ......+....+.....+.+|.+.+++|.++.+      .++..+.+.++..+++++.|+++||+|||+.++.+.++..+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i   80 (392)
T PRK10473          7 CSFALVLLYPAGIDMYLVGLPRIAADLNASEAQ------LHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFII   80 (392)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHH
Confidence            344455566666667778899999999999999      99999999999999999999999999999999999999999


Q ss_pred             HHHHHHhHHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCCCCc
Q 017429          125 FNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNL  203 (371)
Q Consensus       125 ~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~~~~  203 (371)
                      +.+++..+++++.+++.|++.|++.+...+. ..++.|.+|+++|+++.++.+....+|..++|.+++.+.+        
T Consensus        81 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~--------  152 (392)
T PRK10473         81 ASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIML--------  152 (392)
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------
Confidence            9999999999999999999999998887764 9999999999999999999999999999999999998876        


Q ss_pred             ccccccccCccchhHHHHHHHHHHHHH-HHHhhccccccCCCCCCccchhhhhhhhhhhhhhhhhcccCCcccccccccc
Q 017429          204 FSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNW  282 (371)
Q Consensus       204 ~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (371)
                              ..+|+..+++.++..++.. +..+.+||++++..++++  .                   ..+..++.++++
T Consensus       153 --------~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~-------------------~~~~~~~~~~~~  203 (392)
T PRK10473        153 --------KFPWQSLFYTMAAMGILVLLLSLFILKETRPARAPAAS--S-------------------KPRENSESLLNR  203 (392)
T ss_pred             --------CcChHHHHHHHHHHHHHHHHHHHHHcCCCCCcccCCcc--c-------------------hHHHHHHHHhCH
Confidence                    4556666666665555443 345666776432211000  0                   001123456667


Q ss_pred             chHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHH
Q 017429          283 PLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGV  362 (371)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~  362 (371)
                      +++...+...+.......+..+.|.+..+.     +|+++.+.+.+....+++.+++. +..+++.||+++|+.+..+.+
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~i~~~-~~~~~l~~r~g~~~~~~~~~~  277 (392)
T PRK10473        204 FFLSRLVITTLSVTVILTFVNTSPVLLMEQ-----MGFSRGEYAIIMALTAGVSMTVS-FSTPFALGIFKPRTLMLTSQV  277 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCHHHHHHHHHH
Confidence            666554444443333334444555555443     78899999999999999999988 578999999999998888776


Q ss_pred             hhhhcc
Q 017429          363 NFEHSV  368 (371)
Q Consensus       363 ~~~~~~  368 (371)
                      +..++.
T Consensus       278 ~~~~~~  283 (392)
T PRK10473        278 LFLAAG  283 (392)
T ss_pred             HHHHHH
Confidence            655443

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.95  E-value=4.3e-26  Score=214.30  Aligned_cols=307  Identities=14%  Similarity=0.071  Sum_probs=203.1

Q ss_pred             hhHHHHHHHHHHHhhcccccchhhHHHHHHhh--------ccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCC
Q 017429           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDF--------QIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGR  111 (371)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Gr  111 (371)
                      .+..+...+..+..+++...+++..|.+.+++        +.+..+      .+++.+++.++..++++++|+++||+||
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~s~~~ig~~~~~~~~G~l~dr~Gr   84 (479)
T PRK10077         11 FSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSL------LGFCVASALIGCIIGGALGGYCSNRFGR   84 (479)
T ss_pred             HHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhH------HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            34445666777888888899999889888877        666677      9999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHHHHhH------------HHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhh
Q 017429          112 KPVIIMGTASVVIFNTLFGLS------------VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTA  178 (371)
Q Consensus       112 r~~l~~~~~~~~~~~~~~~~~------------~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~  178 (371)
                      |++++++.++..++.+.++++            +.+..+++.|+++|++.|...+. .++++|++|+++|++++++.+.+
T Consensus        85 r~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~  164 (479)
T PRK10077         85 RDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFA  164 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHH
Confidence            999999999998888777653            33567889999999998887775 99999999999999999999999


Q ss_pred             hhhHHhHHHhhhhhhcCcCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhhccccccCCCCCCccchhh--hhh
Q 017429          179 WGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVS--YDA  256 (371)
Q Consensus       179 ~~~g~~~g~~i~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~--~~~  256 (371)
                      ..+|..+++.+++.+.....+        .....++||.++++.++..++..+..+++||++++...+++.++..  .++
T Consensus       165 ~~~G~~~~~~~~~~~~~~~~~--------~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~  236 (479)
T PRK10077        165 IIFGQLVVYFVNYFIARSGDA--------SWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRK  236 (479)
T ss_pred             HHHHHHHHHHHHHHHhccCcc--------cccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHH
Confidence            999999998887766531110        0011456777778877777766666778899876432222111110  000


Q ss_pred             hhhhhh------hhhhhcccCCccccccccccchHHHHHHHHHHHhh----hhhHHHHHHHHhcCCCccCCccccchhhh
Q 017429          257 LESASA------EVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLH----DMAYSEIFSLWANSPKKLGGLNYSTQMVG  326 (371)
Q Consensus       257 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  326 (371)
                      ......      +..+.........+..+.- .............+.    ......+.|.+...      .|.+....+
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~------~g~~~~~~~  309 (479)
T PRK10077        237 IMGNTLATQALQEIKHSLDHGRKTGGKLLMF-GVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKT------LGASTDIAL  309 (479)
T ss_pred             HcCChhHHHHHHHHHHHHHHhhhhhhhhcch-hHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHH------cCCCCchHH
Confidence            000000      0000000000000111110 001111111111111    11112223433332      577777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHhhhhcc
Q 017429          327 EVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVNFEHSV  368 (371)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~  368 (371)
                      ......++..+++. ++.+++.||+|+|+.+..+.++.+++.
T Consensus       310 ~~~~~~~~~~~i~~-~~~g~l~dr~g~r~~~i~~~~~~~v~~  350 (479)
T PRK10077        310 LQTIIVGVINLTFT-VLAIMTVDKFGRKPLQIIGALGMAIGM  350 (479)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHhcChHHHHHhHHHHHHHH
Confidence            77777778888888 588999999999999988887766653

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.95  E-value=1.2e-26  Score=211.42  Aligned_cols=263  Identities=21%  Similarity=0.280  Sum_probs=206.0

Q ss_pred             cccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHHhHHH
Q 017429           55 LPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVN  134 (371)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~  134 (371)
                      ++..+..|.+|.+.+++|.+..+      .++..+++.++..++.++.|+++||+|||+++..+.++.+++.+.+.++++
T Consensus         5 ~~~~~~~p~~~~~~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~   78 (377)
T PRK11102          5 LAIDMYLPALPVIAADFGVSAGS------VQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQT   78 (377)
T ss_pred             hHHHHHhccHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHcc
Confidence            34456678999999999999999      999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCCCCcccccccccCc
Q 017429          135 FWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKF  213 (371)
Q Consensus       135 ~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~~~~~g~~~~~~~~  213 (371)
                      ++.+++.|++.|++.+...+. .+++.|++|+++|++++++.+....+|..++|.+++.+.+                .+
T Consensus        79 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~----------------~~  142 (377)
T PRK11102         79 IDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLV----------------WF  142 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------Hc
Confidence            999999999999998887775 8999999999999999999999999999999999999987                55


Q ss_pred             cchhHHHHHHHHHHHHH-HHHhhccccccCCCCCCccchhhhhhhhhhhhhhhhhcccCCccccccccccchHHHHHHHH
Q 017429          214 PYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYC  292 (371)
Q Consensus       214 ~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (371)
                      +|+..+++.++..++.. +..+++||+++++++++.+.+                  +.....++.+++++++...+..+
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~  204 (377)
T PRK11102        143 SWHAIFWVLALAAILAAALVFFFIPETLPKERRQPFHLR------------------TTIRNFASLFRHKRVLGYMLASG  204 (377)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHhCCccCcccccCCCChH------------------HHHHHHHHHHcChHHHHHHHHHH
Confidence            66777676666655543 445667776432211110000                  00113345677787776666555


Q ss_pred             HHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHh
Q 017429          293 VFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVN  363 (371)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~  363 (371)
                      +.......+..+.|.+..+.     +|+++.+.+.+.....++.++++ ++.+++.||+|+|+.+..+..+
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~-----~g~s~~~~g~~~~~~~~~~~~~~-~~~g~l~~r~g~~~~~~~~~~~  269 (377)
T PRK11102        205 FSFAGMFSFLTAGPFVYIEL-----NGVSPQNFGYYFALNIVFLFVMT-IINSRFVRRVGALNMLRFGLWI  269 (377)
T ss_pred             HHHHHHHHHHHcCHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCHHHHHHHHHHH
Confidence            54444444444445554443     68899999999999999999988 5789999999999988776654

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.95  E-value=1.4e-26  Score=211.49  Aligned_cols=274  Identities=14%  Similarity=0.109  Sum_probs=203.5

Q ss_pred             HHHHHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHH
Q 017429           42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (371)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~  121 (371)
                      .+..+++..++..++........+.+.++++.+..+      .+++.+++.+++.++.+++|+++||+|||++++++.++
T Consensus         4 ~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~   77 (393)
T PRK11195          4 GFYAIMAAQFFSALADNALLFAAIALLKELHYPDWS------QPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGI   77 (393)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH------HHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHH
Confidence            345566777777776666666667778899998888      99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCC
Q 017429          122 VVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY  200 (371)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~  200 (371)
                      .+++.+.+.+..+.   ++.|+++|++.+...|+ .+++.|++|+++|++++++.+....+|..+||.++|.+.+     
T Consensus        78 ~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~-----  149 (393)
T PRK11195         78 KLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALAD-----  149 (393)
T ss_pred             HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence            98888877776664   78899999999998886 9999999999999999999999999999999999999986     


Q ss_pred             CCcccccccccCccchhHHHHHHHHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhhhhhhhhcccCCcccccccc
Q 017429          201 PNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLK  280 (371)
Q Consensus       201 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (371)
                                 . .|+.++.+.+...++..+..+.+||++++.+.++.+....   .+    +.       ....+.+++
T Consensus       150 -----------~-~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~----~~-------~~~~~~l~~  203 (393)
T PRK11195        150 -----------P-HAEAALAVCALIYLLAALFNLFIPRLGARRPGQSWNPIAL---LR----DF-------FHACRVLWR  203 (393)
T ss_pred             -----------H-HHHHHHHHHHHHHHHHHHHHhcCCCCcccccccCCCHHHH---HH----HH-------HHHHHHHHh
Confidence                       1 1444555544444444555667787654322111110000   00    00       012345677


Q ss_pred             ccchHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHH
Q 017429          281 NWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIA  360 (371)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~  360 (371)
                      +|.+.......++............+.|.++.     +|.++.+.|.+....+++.++++. ..+++.||.++++.+..+
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----lg~s~~~~G~~~~~~~~g~i~g~~-~~~~l~~~~~~~~~~~~g  277 (393)
T PRK11195        204 DKLGRFSLAGTTLFWGAGATLRFLVLAWAPVA-----LGITLNQPAYLQAVVAIGIAVGAG-AAARLVTLETVLRVLPAG  277 (393)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCChhHHHHHHHHHHHHHHHHHH-HHHHHhcCCcccchHHHH
Confidence            77766555544444444444555566666655     789999999999999999999984 778888888888766665


Q ss_pred             H
Q 017429          361 G  361 (371)
Q Consensus       361 ~  361 (371)
                      .
T Consensus       278 ~  278 (393)
T PRK11195        278 I  278 (393)
T ss_pred             H
Confidence            4

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.95  E-value=1.9e-27  Score=227.54  Aligned_cols=308  Identities=16%  Similarity=0.134  Sum_probs=229.6

Q ss_pred             HHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHH
Q 017429           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (371)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~  124 (371)
                      ...+..+...+..+...+.++.+.++|+++..+      .|++.+.+.+++.++.++.|+++||+|||+.+.++.+++++
T Consensus        37 ~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~------~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~l  110 (633)
T TIGR00805        37 LLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSS------SGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGL  110 (633)
T ss_pred             HHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCc------ceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHH
Confidence            334455566666677788889999999999999      99999999999999999999999999999999999999999


Q ss_pred             HHHHHHhHH---------------------------------------------------HHHHHHHHHHHHhhhccchh
Q 017429          125 FNTLFGLSV---------------------------------------------------NFWMAVLTRFLLGSLNGLLG  153 (371)
Q Consensus       125 ~~~~~~~~~---------------------------------------------------~~~~~~~~r~l~G~~~~~~~  153 (371)
                      +.+++++++                                                   .+..++++|+++|+|.+...
T Consensus       111 g~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~  190 (633)
T TIGR00805       111 GSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIF  190 (633)
T ss_pred             HHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcch
Confidence            999988764                                                   24567899999999999988


Q ss_pred             HH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCCCCc---------ccccccccCccchhHHHHHH
Q 017429          154 PI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNL---------FSSESLFGKFPYFLPCLCIS  223 (371)
Q Consensus       154 ~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~~~~---------~g~~~~~~~~~~~~~~~~~~  223 (371)
                      +. .+++.|++|+++|++++++++.+..+|..+|+++++++.+...+|+..         ..+||   ..+||..|++.+
T Consensus       191 ~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprW---iGaWwl~Fli~g  267 (633)
T TIGR00805       191 PLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRW---IGAWWIGFLICG  267 (633)
T ss_pred             hcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccH---HHHHHHHHHHHH
Confidence            86 999999999999999999999999999999999999988643222110         11111   234888888888


Q ss_pred             HHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhh----hhhhhhcccCCccccccccccchHHHHHHHHHHHhhhh
Q 017429          224 LFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESAS----AEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDM  299 (371)
Q Consensus       224 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (371)
                      ++.++..+.++++|++.++...+.+.+....++.++..    ....+...+.....+.+++||.++...+..++......
T Consensus       268 ~l~~l~~v~l~~~p~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~  347 (633)
T TIGR00805       268 GVALLTSIPFFFFPKALPKEGKRVNVDVHETEKLEKSEDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFN  347 (633)
T ss_pred             HHHHHHHHHHHhCccccCCcccccchhhhhhhcccccccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence            77777666667777654322111100000000000000    00000011122346678999999999999999988989


Q ss_pred             hHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHH-HHHHHHHHHHHHHHHhc--hhHHHHHHHHhhhhc
Q 017429          300 AYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFS-LLVFQLSLYPFLERILG--PIMVARIAGVNFEHS  367 (371)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~-~~~~~~~~~~~l~~r~~--~~~~~~~~~~~~~~~  367 (371)
                      ++..++|.|++..     +|+++.+++.+.....+. .+++. ++++++.||++  .|+.+.+++++..++
T Consensus       348 ~~~~~lP~yl~~~-----~g~s~~~ag~l~~~~~i~~~~vG~-~l~G~l~~r~~~~~~~~~~~~~~~~~~~  412 (633)
T TIGR00805       348 GYITFLPKYLENQ-----YGISSAEANFLIGVVNLPAAGLGY-LIGGFIMKKFKLNVKKAAYFAICLSTLS  412 (633)
T ss_pred             HHHHHHHHHHHHH-----cCCcHHHHHHHhhhhhhhHHHHHH-hhhhheeeeecccHHHHHHHHHHHHHHH
Confidence            9999999999877     899999999998887764 45555 68899999887  556776666665555

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK15075 citrate-proton symporter; Provisional

Probab=99.95  E-value=4e-26  Score=211.42  Aligned_cols=283  Identities=16%  Similarity=0.118  Sum_probs=195.3

Q ss_pred             hhHHHHHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHH-HHH-----HHHHHHHHhHHHHhhhhhcCCch
Q 017429           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYV-GSS-----FMFGRALTSVFWGLVADRYGRKP  113 (371)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~g~l~dr~Grr~  113 (371)
                      ++.....++..++..++...++...|.+.++++.++.+      .+.. .+.     ..++..+++++.|+++||+|||+
T Consensus        14 ~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~   87 (434)
T PRK15075         14 ARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNE------FASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRK   87 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCc------hHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHH
Confidence            44566788899999999999999999999999988776      4433 222     23333578899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHH--------HHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHh
Q 017429          114 VIIMGTASVVIFNTLFGLSVNFW--------MAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLI  184 (371)
Q Consensus       114 ~l~~~~~~~~~~~~~~~~~~~~~--------~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~  184 (371)
                      +++.+.++..++.++++++++++        .+++.|+++|++.+...+. ..+++|++|+++|++++++.+.+..+|..
T Consensus        88 ~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~  167 (434)
T PRK15075         88 GLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVV  167 (434)
T ss_pred             HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHH
Confidence            99999999999999999988876        4689999999998887774 89999999999999999999988888888


Q ss_pred             HHHhhhhhhcCcCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhhhhh
Q 017429          185 IGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEV  264 (371)
Q Consensus       185 ~g~~i~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (371)
                      +++.+++.+.....++       .. ..++||.++++..+...+........||+++...++                  
T Consensus       168 ~g~~~g~~l~~~~~~~-------~~-~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~------------------  221 (434)
T PRK15075        168 FAALLGYLLNQWLSPA-------QM-AEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLARK------------------  221 (434)
T ss_pred             HHHHHHHHHHHhCCHH-------HH-hccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhh------------------
Confidence            8888887764311000       00 045677777765433222222222223321100000                  


Q ss_pred             hhhcccCCccccccccccchHHH-HHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHH
Q 017429          265 KEEEGREATPKKSLLKNWPLMSS-IIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSL  343 (371)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  343 (371)
                        ++.+.....+...++++.+.. ....++..........+.|.|+++.     +|++..+.++......++.+++. ++
T Consensus       222 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-----~g~~~~~~~~~~~~~~~~~~~~~-~~  293 (434)
T PRK15075        222 --HRPSMREIFRSLAANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTV-----LHLSAADSLLVTLCVGVSNFIWL-PI  293 (434)
T ss_pred             --hccccccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHH-HH
Confidence              000001112223334433332 2233333344455666788887765     68888888888888888888888 58


Q ss_pred             HHHHHHHhchhHHHHHHHH
Q 017429          344 YPFLERILGPIMVARIAGV  362 (371)
Q Consensus       344 ~~~l~~r~~~~~~~~~~~~  362 (371)
                      .+++.||++||+....+.+
T Consensus       294 ~g~l~Dr~g~r~~~~~~~~  312 (434)
T PRK15075        294 GGALSDRIGRRPVLIAFTV  312 (434)
T ss_pred             HHHHHHHhcchHHHHHHHH
Confidence            8999999999998766543

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.95  E-value=1e-26  Score=218.16  Aligned_cols=294  Identities=19%  Similarity=0.162  Sum_probs=201.0

Q ss_pred             HHHHHHHhhcccccchhhHHHHHHhhccc--------cccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHH
Q 017429           46 IWIIVLCTALPISSLFPFLYFMIKDFQIA--------KREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM  117 (371)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~  117 (371)
                      ..+..++..++.....+..+.+..+++.+        ..+      .+++.+++.++..+++++.|+++||+|||++++.
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~  106 (481)
T TIGR00879        33 AAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSL------WGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLI  106 (481)
T ss_pred             HHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhH------HHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHH
Confidence            33344556667777888888888888777        555      9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhH---HHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhh---
Q 017429          118 GTASVVIFNTLFGLS---VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG---  190 (371)
Q Consensus       118 ~~~~~~~~~~~~~~~---~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~---  190 (371)
                      +.++..++.+++.+.   .+++.+++.|++.|++.+...+. ..+++|++|+++|++++++.+.+..+|..+++.++   
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~  186 (481)
T TIGR00879       107 IALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGK  186 (481)
T ss_pred             HHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence            999999998888554   34568999999999998888775 99999999999999999999999999999999998   


Q ss_pred             hhhcCcCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhhccccccCCCCCCccchhhh--hhhh----------
Q 017429          191 GFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSY--DALE----------  258 (371)
Q Consensus       191 ~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~--~~~~----------  258 (371)
                      +...+                ..+|+.++.+.++..++.++..+++||+++....+++.++...  ++..          
T Consensus       187 ~~~~~----------------~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (481)
T TIGR00879       187 VSLNN----------------TLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELL  250 (481)
T ss_pred             hcCCC----------------CccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHH
Confidence            54444                5567777777666666666667788988653211111111000  0000          


Q ss_pred             h----hhhhhhhhcccCCccccccccc------cchHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHH
Q 017429          259 S----ASAEVKEEEGREATPKKSLLKN------WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEV  328 (371)
Q Consensus       259 ~----~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~  328 (371)
                      +    .......+.......+.+.++.      +.++...+..+...........+.+.+...      .|++..+.+..
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~  324 (481)
T TIGR00879       251 DELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFEN------AGVSTDHAFLV  324 (481)
T ss_pred             HHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHH------cCCCchHHHHH
Confidence            0    0000000000001112222221      112222222222222223334445555433      68888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHhhhhcc
Q 017429          329 LAITGFSLLVFQLSLYPFLERILGPIMVARIAGVNFEHSV  368 (371)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~  368 (371)
                      .....++.+++. ++.+++.||+++|+.+..++++.++++
T Consensus       325 ~~~~~~~~~~~~-~~~g~l~d~~~~~~~~~~~~~~~~~~~  363 (481)
T TIGR00879       325 SIIVGAVNFAFT-FVAIFLVDRFGRRPLLLIGAAGMAICL  363 (481)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            888888888888 478999999999998887766655543

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK09952 shikimate transporter; Provisional

Probab=99.95  E-value=4.2e-26  Score=211.28  Aligned_cols=291  Identities=16%  Similarity=0.132  Sum_probs=195.4

Q ss_pred             hHHHHHHHHHHHhhcccccchhhHHH-HHHhh--ccccccccchhh-hHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHH
Q 017429           41 TELFSIWIIVLCTALPISSLFPFLYF-MIKDF--QIAKREEDIGSY-AGYVGSSFMFGRALTSVFWGLVADRYGRKPVII  116 (371)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~  116 (371)
                      +.+....+..+++.++........|. +.+++  +.++.+   +.. .....++..++..+++++.|+++||+|||++++
T Consensus        22 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~   98 (438)
T PRK09952         22 RAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM---GTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLM   98 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH---HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHH
Confidence            44556667788888888887777764 44555  454432   110 111224556778899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhHHHHH--------HHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHH
Q 017429          117 MGTASVVIFNTLFGLSVNFW--------MAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGP  187 (371)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~--------~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~  187 (371)
                      .+.++++++.+++++++++.        .+++.|+++|++.|...+. ..++.|++|+++|++..+..+.+..+|..+++
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~  178 (438)
T PRK09952         99 LTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLST  178 (438)
T ss_pred             HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998876        5888999999998887775 99999999999999999999999999998888


Q ss_pred             hhhhhhcCcCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhhhhhhhh
Q 017429          188 ALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEE  267 (371)
Q Consensus       188 ~i~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (371)
                      .+...+.....+        ..+..++||.++++.++..++........||++++...+.+.+               +.
T Consensus       179 ~~~~~l~~~~~~--------~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~---------------~~  235 (438)
T PRK09952        179 GLVSLISMMTTD--------EQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQA---------------AA  235 (438)
T ss_pred             HHHHHHHHhCCH--------HHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhcc---------------cc
Confidence            777766531110        0011467888888877765554444445666653211110000               00


Q ss_pred             cccCCccccccccccchHHHHH-HHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHH
Q 017429          268 EGREATPKKSLLKNWPLMSSII-VYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPF  346 (371)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~  346 (371)
                      +++ ....+.++++++.+.... ..++.....+....+.|.|..+.     +|++......+....++..+++. ++.++
T Consensus       236 ~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~-----~g~s~~~~~~~~~~~g~~~~i~~-~~~g~  308 (438)
T PRK09952        236 KKR-IPVIEALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQN-----LGLPRELFLNIGLLVGGLSCLTI-PCFAW  308 (438)
T ss_pred             ccc-CCHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence            000 011123456666555443 33333444555666777777654     67777665555555566666666 57899


Q ss_pred             HHHHhchhHHHHHHHHhh
Q 017429          347 LERILGPIMVARIAGVNF  364 (371)
Q Consensus       347 l~~r~~~~~~~~~~~~~~  364 (371)
                      +.||++||+.+..+.++.
T Consensus       309 l~Dr~grr~~~~~~~~~~  326 (438)
T PRK09952        309 LADRFGRRRVYITGALIG  326 (438)
T ss_pred             HHHHhCchHHHHHHHHHH
Confidence            999999999887765543

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.95  E-value=8.7e-27  Score=202.44  Aligned_cols=285  Identities=14%  Similarity=0.149  Sum_probs=235.2

Q ss_pred             CCChhHHHHHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHH
Q 017429           37 GLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII  116 (371)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~  116 (371)
                      +...+.++..+++..+..+...+..+..+.+.+++|+|+.|      .+++.++..+...+..++.|.+.||+|.|++..
T Consensus        10 ~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q------~~ll~aiPil~GallRl~~g~l~drfGgR~~~~   83 (417)
T COG2223          10 RIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQ------KGLLVAIPILVGALLRLPYGFLTDRFGGRKWTI   83 (417)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHH------HHHHHHHHHHHhHHHHHHHHhhhcccCchHHHH
Confidence            34557777777777788888888889999999999999999      999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhHH---HHHHHHHHHHHHhhhccchhHHHHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhh
Q 017429          117 MGTASVVIFNTLFGLSV---NFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL  193 (371)
Q Consensus       117 ~~~~~~~~~~~~~~~~~---~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l  193 (371)
                      ++.++..+.++..+++.   +++++++.+++.|++.+.+.+....+++++|+|++|.++|+.. ..++|..+...++..+
T Consensus        84 ~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v  162 (417)
T COG2223          84 LSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLV  162 (417)
T ss_pred             HHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHH
Confidence            99999999999988865   4459999999999999998888999999999999999999998 8888988888888888


Q ss_pred             cCcCCCCCCcccccccccCccchhHHHHHHHHHHH-HHHHHhhccccccCCCCCCccchhhhhhhhhhhhhhhhhcccCC
Q 017429          194 AQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFG-VTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREA  272 (371)
Q Consensus       194 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (371)
                      ..       .+|+.      .|+....+..+..++ .++.++.+.|.+..+...++..                     +
T Consensus       163 ~~-------~~g~~------~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~---------------------~  208 (417)
T COG2223         163 AV-------AFGFL------AWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQL---------------------P  208 (417)
T ss_pred             HH-------HHhhH------HHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccc---------------------h
Confidence            76       22200      155554444444444 4555666766665322211110                     0


Q ss_pred             ccccccccccchHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 017429          273 TPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILG  352 (371)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~  352 (371)
                      ...+.++++++.|...+.|+.......++..++|.|+.+.     ++.++.++|.....+.+.+.+.+ +++|+++||+|
T Consensus       209 ~~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~-----fg~~~~~Ag~~a~~f~~~g~l~R-p~GG~LsDR~G  282 (417)
T COG2223         209 AQLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQ-----FGLSPVTAGLIAFLFPLIGALAR-PLGGWLSDRIG  282 (417)
T ss_pred             hHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCChhhHHHHHHHHHHHHHHHH-hccchhhhhcc
Confidence            2456678899999999999999999999999999999998     89999999999999999999999 69999999999


Q ss_pred             hhHHHHHHHHhhhhcc
Q 017429          353 PIMVARIAGVNFEHSV  368 (371)
Q Consensus       353 ~~~~~~~~~~~~~~~~  368 (371)
                      .++.+...+..++++.
T Consensus       283 g~rv~~~~f~~~~~~~  298 (417)
T COG2223         283 GRRVTLAVFVGMALAA  298 (417)
T ss_pred             chhHHHHHHHHHHHHH
Confidence            9999888777766554

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.95  E-value=2.1e-26  Score=215.34  Aligned_cols=284  Identities=13%  Similarity=0.144  Sum_probs=212.7

Q ss_pred             ChhHHHHHHHHHHHhhcccccchhhHHHHHH----------------------hhccccccccchhhhHHHHHHHHHHHH
Q 017429           39 PITELFSIWIIVLCTALPISSLFPFLYFMIK----------------------DFQIAKREEDIGSYAGYVGSSFMFGRA   96 (371)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (371)
                      ++.....++++......+....+...+.+.+                      +++++..+      .|++.+++.+++.
T Consensus        17 r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~g~~~s~~~~~~~   90 (465)
T TIGR00894        17 RLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGAL------QGLILSSHFYGQI   90 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHH------hhHHHHHHHHHHH
Confidence            3344445555666666666555555555544                      67777777      9999999999999


Q ss_pred             HHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhH
Q 017429           97 LTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS--VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLS  173 (371)
Q Consensus        97 ~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~  173 (371)
                      +++++.|+++||+|||+++..+.++.+++.+++.++  .+++.+++.|+++|++.+...+. ..+++|++|+++|+++++
T Consensus        91 ~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~  170 (465)
T TIGR00894        91 IIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLG  170 (465)
T ss_pred             HHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHH
Confidence            999999999999999999999999998888776544  45788999999999999988886 999999999999999999


Q ss_pred             hhhhhhhhHHhHHHhhhhhhcCcCCCCCCcccccccccC-ccchhHHHHHHHHHHHHHHHHh-hccccccCCCCCCccch
Q 017429          174 TVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGK-FPYFLPCLCISLFAFGVTIAAF-WLPETLHRHNDDDDSCD  251 (371)
Q Consensus       174 ~~~~~~~~g~~~g~~i~~~l~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~  251 (371)
                      +...+..+|..++|.+++.+.+                . .+|+.++++.++..++..+.++ +.+|+|+..+...++  
T Consensus       171 ~~~~~~~~g~~i~~~l~~~l~~----------------~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~--  232 (465)
T TIGR00894       171 MSTSGFQLGTFIFLPISGWLCE----------------SWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCISKF--  232 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh----------------ccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCCCCHH--
Confidence            9999999999999999999987                3 2556666777766665555444 445555332211111  


Q ss_pred             hhhhhhhhhhhhhhhhcccCCccccccccccchHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHH
Q 017429          252 VSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAI  331 (371)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~  331 (371)
                       .++..++.. +.++++.+.+..++++++++.++...+..++.......+..++|.|+.+.     +|++..+.++..+.
T Consensus       233 -~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~-----~g~s~~~~g~~~~~  305 (465)
T TIGR00894       233 -EKKYINSSL-QGQKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWV-----LRVSGKENGLLSSL  305 (465)
T ss_pred             -HHHHHHhhc-ccccCCCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCcChHHhHHHHHH
Confidence             101111100 00011111234577889999999999988888888888888999998766     78999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhchh
Q 017429          332 TGFSLLVFQLSLYPFLERILGPI  354 (371)
Q Consensus       332 ~~~~~~~~~~~~~~~l~~r~~~~  354 (371)
                      ..++..++. ++.+++.||.++|
T Consensus       306 ~~~~~~i~~-~~~g~l~d~~~~~  327 (465)
T TIGR00894       306 PYLFAWLCS-IFAGYLADFLKSS  327 (465)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHc
Confidence            899998888 4889999987544

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.95  E-value=1.7e-26  Score=217.73  Aligned_cols=199  Identities=16%  Similarity=0.143  Sum_probs=155.3

Q ss_pred             hhHHHHHHHHHHHhhcccccchhhHHHHHHhh-----ccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchH
Q 017429           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDF-----QIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPV  114 (371)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~  114 (371)
                      ++.+....+..+..+++....+...|.+.+++     +.+..+      .+++.+.+.++..+++++.|+++||+|||++
T Consensus        15 ~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~   88 (502)
T TIGR00887        15 FRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSV------SAAVNGSASIGTLAGQLFFGWLADKLGRKRV   88 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHH------HHHHHHHHHHHHHHHHHHHHHHHHhhccHHH
Confidence            34444666777888888888888888776643     122333      7899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhHHH------HHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHH
Q 017429          115 IIMGTASVVIFNTLFGLSVN------FWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGP  187 (371)
Q Consensus       115 l~~~~~~~~~~~~~~~~~~~------~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~  187 (371)
                      +.++.++..++.++++++++      ++.+++.|++.|++.|...+. ..+++|++|+++|++++++.+....+|..+++
T Consensus        89 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~  168 (502)
T TIGR00887        89 YGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGA  168 (502)
T ss_pred             HHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999988887654      788999999999998887775 99999999999999999999999999999999


Q ss_pred             hhhhhhcCcCCC---CCC---ccccccc-ccCccchhHHHHHHHHHHHHHHHHhhccccccCCC
Q 017429          188 ALGGFLAQPAEK---YPN---LFSSESL-FGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHN  244 (371)
Q Consensus       188 ~i~~~l~~~~~~---~~~---~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  244 (371)
                      .++..+.....+   .+.   ...++.. ...++||.++.+.++.+++..+..+++||+|++..
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~  232 (502)
T TIGR00887       169 IVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTA  232 (502)
T ss_pred             HHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence            988776431110   000   0000000 01357899888888888777777889999998744

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK11043 putative transporter; Provisional

Probab=99.95  E-value=1.9e-25  Score=205.08  Aligned_cols=266  Identities=17%  Similarity=0.191  Sum_probs=206.1

Q ss_pred             HHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHH
Q 017429           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (371)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~  124 (371)
                      ...+...+..+....+.|.+|.+.+++|.++.+      .++..+++.++..++++++|+++||+|||+.+..+.++..+
T Consensus        10 ~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~------~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~   83 (401)
T PRK11043         10 YLAGLSMLGFLATDMYLPAFKAIQADLQTSASA------VSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFAL   83 (401)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHCCCHHH------HHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHH
Confidence            334345555566777888889999999999999      99999999999999999999999999999999999999999


Q ss_pred             HHHHHHhHHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCCCCc
Q 017429          125 FNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNL  203 (371)
Q Consensus       125 ~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~~~~  203 (371)
                      +.+++.++++++.+++.|++.|++.+...+. .+++.|.+|++++++..+.......+|..++|.+++.+.+        
T Consensus        84 ~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~--------  155 (401)
T PRK11043         84 GSLGMLWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLN--------  155 (401)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------
Confidence            9999999999999999999999987776665 8899999999999999999888889999999999999987        


Q ss_pred             ccccccccCccchhHHHHHHHHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhhhhhhhhcccCCccccccccccc
Q 017429          204 FSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWP  283 (371)
Q Consensus       204 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (371)
                              .++|+..+++.++..++..+..++++|++++.+++    +                   .+..+++++++++
T Consensus       156 --------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-------------------~~~~~~~~~~~~~  204 (401)
T PRK11043        156 --------HFGWQAIFATLFAITLLLILPTLRLKPSKKARKQS----Q-------------------DALTFKQLLKSKT  204 (401)
T ss_pred             --------cCChHHHHHHHHHHHHHHHHHHHHcCCCCCccccc----h-------------------HHHHHHHHHcChh
Confidence                    55677766777666666555555565543211100    0                   0123456677777


Q ss_pred             hHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHH
Q 017429          284 LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGV  362 (371)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~  362 (371)
                      ++...+...+.......+..+.|.+..+      +|+++.+.++......++.+++. ...+++.||+++|+....+.+
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~------~g~s~~~~g~~~~~~~~~~~~g~-~~~~~l~~r~~~~~~~~~~~~  276 (401)
T PRK11043        205 YLGNVLIFAACSAAFFAWLTGSPFILEQ------MGYSPADIGLSYVPQTIAFLVGG-YGCRAALQKWGGEQLLPWLLV  276 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHH------cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCHHHHHHHHHH
Confidence            7665555555444555566667766643      68899999988888888888887 477899999998886544433

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.94  E-value=2.2e-25  Score=210.43  Aligned_cols=300  Identities=15%  Similarity=0.164  Sum_probs=210.9

Q ss_pred             CChhHHHHHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHH
Q 017429           38 LPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM  117 (371)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~  117 (371)
                      .+++.+..+++..++..++.....+..|.+.+++|.+..+      .+++.+.+.++..+++++.|+++||+|||++++.
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~   90 (496)
T PRK03893         17 AQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQ------AASLISAAFISRWFGGLLLGAMGDRYGRRLAMVI   90 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence            3455666788888888888888889999999999999999      9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCc
Q 017429          118 GTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP  196 (371)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~  196 (371)
                      +.++.+++.+++.++++++.+++.|++.|++.+...+. ..++.|.+|+++|++++++...+..+|..++|.+++.+.+ 
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-  169 (496)
T PRK03893         91 SIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVP-  169 (496)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence            99999999999999999999999999999987776664 8999999999999999999999999999999999999987 


Q ss_pred             CCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhhccccccCCCCCCccchhh--hhhhhhhhhhhhhh-------
Q 017429          197 AEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVS--YDALESASAEVKEE-------  267 (371)
Q Consensus       197 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-------  267 (371)
                                     .++|+..+.+..+..++.++.....||++++..+++++.+..  .+............       
T Consensus       170 ---------------~~~w~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (496)
T PRK03893        170 ---------------VWGWRALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAA  234 (496)
T ss_pred             ---------------cCCHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHH
Confidence                           555666656554444444444455676543221111110000  00000000000000       


Q ss_pred             -------cccCCccc-------------------cccccccchHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCcccc
Q 017429          268 -------EGREATPK-------------------KSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYS  321 (371)
Q Consensus       268 -------~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  321 (371)
                             .......+                   ....+.+......+..+...........++|.|+...     +|++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~-----~g~~  309 (496)
T PRK03893        235 AALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTD-----LGYD  309 (496)
T ss_pred             HHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhh-----cCCC
Confidence                   00000000                   0000001111111111111222223456778887654     7999


Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHhhh
Q 017429          322 TQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVNFE  365 (371)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~  365 (371)
                      ..+++.+.+...++.+++. ++.+++.||+++|+.+..+..+..
T Consensus       310 ~~~~g~~~~~~~~~~~~g~-~~~g~l~dr~g~~~~~~~~~~~~~  352 (496)
T PRK03893        310 PHTVANVLFFSGFGAAVGC-CVGGFLGDWLGTRKAYVCSLLISQ  352 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcchHHHHHHHHHHH
Confidence            9999999999999999988 588999999999988777665443

>TIGR00895 2A0115 benzoate transport

Probab=99.94  E-value=8.5e-26  Score=206.98  Aligned_cols=292  Identities=18%  Similarity=0.241  Sum_probs=203.2

Q ss_pred             hhHHHHHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHH
Q 017429           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (371)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~  119 (371)
                      ++.+....+..+..........+..|.+.+++|.+..+      .+++.+...++..++.++.|+++||+|||+.+..+.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~   89 (398)
T TIGR00895        16 WRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQ------LGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSI   89 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHH------HHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHH
Confidence            34444555566666666677778889999999999988      999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCC
Q 017429          120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE  198 (371)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~  198 (371)
                      ++..++.++..+.++++.+++.|++.|++.+...+. .+++.|++|+++|++++++.+.+..+|..++|.+++.+.+   
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~---  166 (398)
T TIGR00895        90 LLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIP---  166 (398)
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhh---
Confidence            999999999999999999999999999998887775 9999999999999999999999999999999999999987   


Q ss_pred             CCCCcccccccccCccchhHHHHHHHHH-HHHHHHHhhccccccCCCCCCccc-hhhhhhhhhhhhhh-----hhhcc--
Q 017429          199 KYPNLFSSESLFGKFPYFLPCLCISLFA-FGVTIAAFWLPETLHRHNDDDDSC-DVSYDALESASAEV-----KEEEG--  269 (371)
Q Consensus       199 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~~~~~~-----~~~~~--  269 (371)
                                   .++|+..+++.++.. +..++...++||+++...+++++. ....++.+.....+     .+++.  
T Consensus       167 -------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (398)
T TIGR00895       167 -------------VFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQ  233 (398)
T ss_pred             -------------cccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHHHHHHHHhcccccccccccccccc
Confidence                         334444445554333 334445667788764322221111 00000000000000     00000  


Q ss_pred             cCCcc-cccccccc---chHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHH
Q 017429          270 REATP-KKSLLKNW---PLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYP  345 (371)
Q Consensus       270 ~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  345 (371)
                      ...+. .+.+++++   ..+......++..........+.|.+...      +|+++.+.+.......++.+++. ++.+
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~-~~~~  306 (398)
T TIGR00895       234 GTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVE------LGFSLSLAATGGALFNFGGVIGS-IIFG  306 (398)
T ss_pred             chhhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHHHHHHHHHHH-HHHH
Confidence            00111 11122222   22223333334444444455566644433      68899999999999999999988 5889


Q ss_pred             HHHHHhchhHHHHHH
Q 017429          346 FLERILGPIMVARIA  360 (371)
Q Consensus       346 ~l~~r~~~~~~~~~~  360 (371)
                      ++.||+++|+.+...
T Consensus       307 ~l~~~~~~~~~~~~~  321 (398)
T TIGR00895       307 WLADRLGPRVTALLL  321 (398)
T ss_pred             HHHhhcchHHHHHHH
Confidence            999999998554433

>TIGR00897 2A0118 polyol permease family

Probab=99.94  E-value=3.5e-25  Score=203.11  Aligned_cols=273  Identities=14%  Similarity=0.154  Sum_probs=200.5

Q ss_pred             hHHHHHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHH
Q 017429           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (371)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~  120 (371)
                      +.+...+++.++.....+...+.++.+.+++|.++.+      .++..+.+.++..+++++.|+++||+|||+++..+.+
T Consensus        13 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~   86 (402)
T TIGR00897        13 LNLLWGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQ------SASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLL   86 (402)
T ss_pred             chhhHHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHH------hHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            4556677777777777777777888888999999999      9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH---h-HHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHH-hHHHhhhhhhc
Q 017429          121 SVVIFNTLFG---L-SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGL-IIGPALGGFLA  194 (371)
Q Consensus       121 ~~~~~~~~~~---~-~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~~g~~i~~~l~  194 (371)
                      +.+++.+++.   . .++++.+++.|++.|++.+...+. ...+.|.+|+++|++++|+.+.+.++|. .++|.+++.+.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~  166 (402)
T TIGR00897        87 LWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAI  166 (402)
T ss_pred             HHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9888876553   2 257888899999999987766654 7888899999999999999999999996 68999999888


Q ss_pred             CcCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhhhhhhhhcccCCcc
Q 017429          195 QPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATP  274 (371)
Q Consensus       195 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (371)
                      +       .+||+..+    |+..+..    .+..++..+..++.++.+..+ ++.+                ..+..+.
T Consensus       167 ~-------~~g~~~~~----~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~----------------~~~~~~~  214 (402)
T TIGR00897       167 P-------AFGEMNTL----WSALAFV----LTGGVIALFSNKDIFTPQHMQ-TREK----------------FSELGKA  214 (402)
T ss_pred             c-------ccchHHHH----HHHHHHH----HHHHHHHHhccCCCCCccccc-CCcc----------------hhhHHHH
Confidence            7       23332211    2222211    111222333344432111100 0000                0000123


Q ss_pred             ccccccccchHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 017429          275 KKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPI  354 (371)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~  354 (371)
                      ++.++++|+++...+..++......+...+.|.|..+      +|+++.+.+.+.+...++..++. +..+++.||+++|
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~------~g~s~~~~~~~~~~~~~~~~ig~-~~~g~l~dr~~~~  287 (402)
T TIGR00897       215 ATILFTNPNVLLGGMVRIINTIGLFGFAVFLPMFVAE------LGFSTSEWLQIWGTFFFTNIVFN-VIFGIVGDKLGWM  287 (402)
T ss_pred             HHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCChhHHHHHHHHHHHHHHHHH-HHHHHHHHhhcch
Confidence            4567889998887777777777777778888888754      68899999998888889999988 4789999999988


Q ss_pred             HHHH
Q 017429          355 MVAR  358 (371)
Q Consensus       355 ~~~~  358 (371)
                      +.+.
T Consensus       288 ~~~~  291 (402)
T TIGR00897       288 NTVR  291 (402)
T ss_pred             hHHH
Confidence            7653

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.94  E-value=5.4e-25  Score=201.54  Aligned_cols=295  Identities=13%  Similarity=0.054  Sum_probs=215.0

Q ss_pred             HHHHHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHH
Q 017429           42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (371)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~  121 (371)
                      .+..++...+..++..+...+.+|.+++++|.+..+      .|++.+.+.+++.+++++.|++.||+|||+.++.+.++
T Consensus         4 ~~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~------~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l   77 (410)
T TIGR00885         4 PFALITSLFALWGFANDITNPMVPQFQQAFTLTAFQ------AALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFL   77 (410)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence            345667777788888888899999999999999999      99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHh---HHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcC
Q 017429          122 VVIFNTLFGL---SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA  197 (371)
Q Consensus       122 ~~~~~~~~~~---~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~  197 (371)
                      .+++.+++..   .++++.+++.|++.|++.|...+. .+++.+..|+++|++.+++.+...++|..++|.+++.+....
T Consensus        78 ~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~  157 (410)
T TIGR00885        78 YALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSN  157 (410)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999887644   357899999999999999988775 899999999999999999999999999999999999886421


Q ss_pred             CCCCCc-ccccc---------cccCccchhHHHHHHHHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhhhhhhhh
Q 017429          198 EKYPNL-FSSES---------LFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEE  267 (371)
Q Consensus       198 ~~~~~~-~g~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (371)
                      .+.... .-+..         .-...+|+.++++.++..++..+...+.++++.+.  ++++                  
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~--~~~~------------------  217 (410)
T TIGR00885       158 LPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH--SDAK------------------  217 (410)
T ss_pred             CccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc--cccc------------------
Confidence            000000 00000         00023588888777766555444333332211110  0000                  


Q ss_pred             cccCCccccccccccchHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 017429          268 EGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFL  347 (371)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l  347 (371)
                      +.+.....++++++|.++...+..+++...+.+..++++.|..+..    .+.+....+...+.......+++ ++++++
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~----~~~~~~~a~~~~~~~~~~~~vGR-~~~~~l  292 (410)
T TIGR00885       218 QISFSASLSRLARIRHYREGVIAQFFYVGVQIMCWTFIIQYAVRLI----PGMTAGFAANYNIGAMVIFFISR-FIGTWL  292 (410)
T ss_pred             cccchhhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----CCCCHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence            0000113346778888888888888888888777788888875421    24444555555666666777888 588999


Q ss_pred             HHHhchhHHHHHHHHhhhhc
Q 017429          348 ERILGPIMVARIAGVNFEHS  367 (371)
Q Consensus       348 ~~r~~~~~~~~~~~~~~~~~  367 (371)
                      .||+++|+.+..+.++.+++
T Consensus       293 ~~r~~~~~~l~i~~~~~~~~  312 (410)
T TIGR00885       293 ISYLAAHKVLMAYAIIGMAL  312 (410)
T ss_pred             HHHcCHHHHHHHHHHHHHHH
Confidence            99999999887766655444

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.94  E-value=3.5e-25  Score=202.86  Aligned_cols=266  Identities=16%  Similarity=0.252  Sum_probs=203.7

Q ss_pred             ChhHHHHHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHH
Q 017429           39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (371)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~  118 (371)
                      +++.++......++..+......|.+|.+.+++|.+..+      .+++.+++.++..+++++.|+++||+|||+++..+
T Consensus         6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~   79 (394)
T PRK11652          6 NVNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGA------VQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVG   79 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHH
Confidence            456666566666666677777888899999999999999      99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcC
Q 017429          119 TASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA  197 (371)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~  197 (371)
                      .++..++.+++.+.++++.+++.|++.|++.+...+. ..+..|.+++++|+++.+..+.+..+|..++|.+++.+.+  
T Consensus        80 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~--  157 (394)
T PRK11652         80 MSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTT--  157 (394)
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence            9999999999999999999999999999988877675 7888999999999999999999999999999999999987  


Q ss_pred             CCCCCcccccccccCccchhHHHHHHHHHHHH-HHHHhhccccccCCCCCCccchhhhhhhhhhhhhhhhhcccCCcccc
Q 017429          198 EKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKK  276 (371)
Q Consensus       198 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (371)
                                    .++|+..+.+.++..++. ++..++.||+++.++++.   +                   ....++
T Consensus       158 --------------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-------------------~~~~~~  201 (394)
T PRK11652        158 --------------LFGWRACYLFLLLLGAGVTFSMARWMPETRPADARRT---R-------------------VLASYR  201 (394)
T ss_pred             --------------ccChHHHHHHHHHHHHHHHHHHHHhCCccCccccchh---H-------------------HHHHHH
Confidence                          556677667766555443 334556777643221110   0                   012344


Q ss_pred             ccccccchHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 017429          277 SLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPI  354 (371)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~  354 (371)
                      +.+++|.++...+..+........+....+.+..+.     +|+++.+.+++.....++.+++. .+.+++.||.+++
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~g~-~~~~~l~~~~~~~  273 (394)
T PRK11652        202 TLLSNRRFNCYLLMLIGTLAGIAVFEACSGVLMGAV-----LGLSSMTVSILFILPIPAAFFGA-WFAGRPNKRFSTL  273 (394)
T ss_pred             HHHcChHHHHHHHHHHHHHHHHHHHHHhChHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            566777776655544444433344444455555444     78899999998888777777777 4778888888743

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.94  E-value=7.6e-27  Score=204.36  Aligned_cols=283  Identities=17%  Similarity=0.130  Sum_probs=212.7

Q ss_pred             cccCCChhHHHHHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCch
Q 017429           34 TKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKP  113 (371)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~  113 (371)
                      ...+.+++.+..+++..++..++.+.+....+.+.+.+|++++.      .|++.+.+.+++.+++|++|+++||+.||+
T Consensus        26 ~~~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~------~Gll~~vf~v~~~i~sPl~gyLadryNR~~   99 (493)
T KOG1330|consen   26 LSMKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSE------LGLLQTVFIVVFMIASPLFGYLADRYNRKR   99 (493)
T ss_pred             cccccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchh------ccchhHHHHHHHHHHHHHHHHHHhhcCcce
Confidence            34455667777889999999999999999999999999999999      999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhh
Q 017429          114 VIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGF  192 (371)
Q Consensus       114 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~  192 (371)
                      ++.+|..++.++.+.++++..+|++.++|.+.|+|.+.+.++ +++++|.+|.++|++++++++.+..+|..+|.+.++.
T Consensus       100 v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~  179 (493)
T KOG1330|consen  100 VIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSV  179 (493)
T ss_pred             EEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeee
Confidence            999999999999999999999999999999999999999886 9999999999999999999999999999999999998


Q ss_pred             hcCcCCCCCCcccccccccCccchhHHHHHHHHHHHH-HHHHhhccccccCCCCCCccchhhhhhhhhhhhhhhhhcccC
Q 017429          193 LAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGRE  271 (371)
Q Consensus       193 l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (371)
                      +...       .+        .||+.+...+++.++. ++..++.+|+++...++.+.+...           .......
T Consensus       180 va~~-------~~--------~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~~~-----------~~~~ts~  233 (493)
T KOG1330|consen  180 VASL-------TF--------WWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVDGENKM-----------VKPFTSV  233 (493)
T ss_pred             eccC-------cc--------ceEEEEEeehHHHHHHHHHHHhhccCcccccccccccCCcC-----------CCCccch
Confidence            8873       22        1344445556666554 445666777665433322211110           0011122


Q ss_pred             CccccccccccchHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017429          272 ATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL  351 (371)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~  351 (371)
                      .++.+.+.+++.+....+.+....+...++.-+.|.+.+..+..  .|++..+...+..+...++.++. ++++.+.||+
T Consensus       234 ~kDl~~l~~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~--~~~~~~~~~ifg~vt~~~G~lGv-l~Ggiisd~~  310 (493)
T KOG1330|consen  234 WKDLKVLAKIKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYEL--IGFDHNATLIFGGVTCAGGSLGV-LFGGIISDKL  310 (493)
T ss_pred             HHHHHHHHccCceeeehHHHHHHHHhccccchhhhhHHHHHHHH--hCCccccchhhhhHHHhhchhhh-eehHHHHHHH
Confidence            33444555666666666666655555555555555554443333  34556666666666666777766 4778888874

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.94  E-value=1.9e-25  Score=207.97  Aligned_cols=276  Identities=11%  Similarity=0.038  Sum_probs=195.7

Q ss_pred             HHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHH
Q 017429           49 IVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTL  128 (371)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~  128 (371)
                      ......+.........|.+.++ |++..+      .++..+.+.++..+++++.|+++||+|||++++++.++.+++.++
T Consensus        37 ~~~~~~~~~~~~~~~~p~l~~~-g~s~~~------~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~  109 (452)
T PRK11273         37 GYAAYYLVRKNFALAMPYLVEQ-GFSRGD------LGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLF  109 (452)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHc-CCCHHH------HHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHH
Confidence            3333344444456677888877 999999      999999999999999999999999999999999999999999888


Q ss_pred             HHhHH----HHHHHHHHHHHHhhhccchhH-HHHHHhhhccccchhhhhHhhhhhhhhHHh-HHHhhhhhhcCcCCCCCC
Q 017429          129 FGLSV----NFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLI-IGPALGGFLAQPAEKYPN  202 (371)
Q Consensus       129 ~~~~~----~~~~~~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~g~~i~~~l~~~~~~~~~  202 (371)
                      +++.+    +++.+++.|++.|++.+...+ ....+.|++|+++|++++++.+.+..+|.. .+|+++..+..       
T Consensus       110 ~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~-------  182 (452)
T PRK11273        110 MGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAW-------  182 (452)
T ss_pred             HHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-------
Confidence            87753    678889999999998887766 478889999999999999999999988864 45555433332       


Q ss_pred             cccccccccCccchhHHHHHHHHHHH-HHHHHhhccccccCCCCCCccchhhhhhhhhhhhhhhhhcccCCcc-cccccc
Q 017429          203 LFSSESLFGKFPYFLPCLCISLFAFG-VTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATP-KKSLLK  280 (371)
Q Consensus       203 ~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  280 (371)
                               ..+|+..+++.+++.++ .++..+++||+++....++++ +.. ++.+....+.++++.+.... .+..++
T Consensus       183 ---------~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (452)
T PRK11273        183 ---------FNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPPIE-EYK-NDYPDDYNEKHEQELTAKQIFMQYVLP  251 (452)
T ss_pred             ---------hccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCChh-hhh-hccccccccccCCCccHHHHHHHHHHc
Confidence                     23566666776655554 345567778876542211111 000 00000000000000000111 123678


Q ss_pred             ccchHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHh--chhH
Q 017429          281 NWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL--GPIM  355 (371)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~--~~~~  355 (371)
                      ++.+|...+..++..........++|.|+.+.     .|++..+++.......++.+++. ++.+++.||+  +||.
T Consensus       252 ~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~-----~g~s~~~~~~~~~~~~~~~~~g~-~~~G~l~dr~~~~r~~  322 (452)
T PRK11273        252 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEV-----KHFALDKSSWAYFLYEYAGIPGT-LLCGWMSDKVFRGNRG  322 (452)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHccCCcc
Confidence            88888888887777777777788999998776     68888899988888888888888 5889999998  4443

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.94  E-value=3.1e-25  Score=200.70  Aligned_cols=285  Identities=20%  Similarity=0.219  Sum_probs=206.8

Q ss_pred             HHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHH
Q 017429           68 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGL---SVNFWMAVLTRFL  144 (371)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~r~l  144 (371)
                      .+++|.+.++++.....+.+.+++.+|.++|+.+.|.++||+|||..+.++.++..++.+++.+   .+++..++++|++
T Consensus        46 ~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i  125 (485)
T KOG0569|consen   46 IERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLI  125 (485)
T ss_pred             HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            3567766666667777999999999999999999999999999999999998888887776665   5788999999999


Q ss_pred             HhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCCCCcccccccccCccchhHHHHHH
Q 017429          145 LGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCIS  223 (371)
Q Consensus       145 ~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  223 (371)
                      .|+..|..... ..++.|..|++.||....+.+.+..+|.+++..++.--.         +|-     ...|...+....
T Consensus       126 ~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~i---------lGt-----~~~W~~l~~~~~  191 (485)
T KOG0569|consen  126 VGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSL---------LGT-----EDLWPYLLAFPL  191 (485)
T ss_pred             HHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHh---------cCC-----CcchHHHHHHHH
Confidence            99998887775 999999999999999988989999999988866653211         111     334677777788


Q ss_pred             HHHHHHHHHHhhccccccCCCC-CCccchhhh------------hhhhhhhhhhhhh--cccCCccccccccccchHHHH
Q 017429          224 LFAFGVTIAAFWLPETLHRHND-DDDSCDVSY------------DALESASAEVKEE--EGREATPKKSLLKNWPLMSSI  288 (371)
Q Consensus       224 ~~~~~~~~~~~~~~e~~~~~~~-~~~~~~~~~------------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  288 (371)
                      +.+++.++...++||+|++... +++++++.+            ++.+...++.+++  ..+...+.+++++++..+...
T Consensus       192 i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~  271 (485)
T KOG0569|consen  192 IPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPL  271 (485)
T ss_pred             HHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHH
Confidence            8888888899999999998655 333333221            0111111111111  122555778899988776653


Q ss_pred             HHHH-HHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHhhhhc
Q 017429          289 IVYC-VFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVNFEHS  367 (371)
Q Consensus       289 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~  367 (371)
                      ...+ +....++........|.  .....+.|++..++-+.....++...+.+ +++.++.||.|||++++.++.+..++
T Consensus       272 ~i~~~v~~~qq~sGi~ai~~Ys--t~i~~~aG~~~~~a~~an~~~g~v~~~~t-~~~~~lid~~gRRpLll~~~~~~~~~  348 (485)
T KOG0569|consen  272 LIGIVVSFAQQFSGINAIFFYS--TSIFKTAGFTPEEAQYANLGIGIVNLLST-LVSPFLIDRLGRRPLLLISLSLMAVA  348 (485)
T ss_pred             HHHHHHHHHHHhcCcceeHHHH--HHHHHHcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence            3332 22222332222222232  22333368999999999999999999998 58999999999999999988887665


Q ss_pred             cc
Q 017429          368 VA  369 (371)
Q Consensus       368 ~~  369 (371)
                      ..
T Consensus       349 ~~  350 (485)
T KOG0569|consen  349 LL  350 (485)
T ss_pred             HH
Confidence            43

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.94  E-value=1.6e-24  Score=201.50  Aligned_cols=282  Identities=13%  Similarity=0.087  Sum_probs=197.9

Q ss_pred             ChhHHHHHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHH
Q 017429           39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (371)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~  118 (371)
                      +|..+...++................|.+.+++|.+.++      .+++.+.+.++..++.++.|+++||+|||++++.+
T Consensus        17 ~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~------~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~   90 (455)
T TIGR00892        17 GWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSE------TAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAG   90 (455)
T ss_pred             chHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhH------HHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhh
Confidence            344444444444433344455677889999999999999      99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhHHHHHHHHH-HHHHHhhhccchhH-HHHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCc
Q 017429          119 TASVVIFNTLFGLSVNFWMAVL-TRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP  196 (371)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~-~r~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~  196 (371)
                      .++..++.++++++++++.+++ .|++.|++.+...+ ...++.++++ ++|+++.++.+.+..+|..++|.+++.+.+ 
T Consensus        91 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~-  168 (455)
T TIGR00892        91 GLLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFE-  168 (455)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHH-
Confidence            9999999999999999988865 56899998876544 5778889886 789999999999999999999999999987 


Q ss_pred             CCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhhc-cccccCCCCCCccchh-hhhhhhhhhhhhhhhcccCCcc
Q 017429          197 AEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL-PETLHRHNDDDDSCDV-SYDALESASAEVKEEEGREATP  274 (371)
Q Consensus       197 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  274 (371)
                                     .++|+.++++.+++.++..+..+++ ++.+.+...+.++.+. ..+...+........+...+..
T Consensus       169 ---------------~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (455)
T TIGR00892       169 ---------------SFGWRGSFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSKEGLPPDGSTKKLSKKSTAEKINRFL  233 (455)
T ss_pred             ---------------HhChHHHHHHHHHHHHHHHHHHHHhCCCCcccccccccccccCCCCCccccccccchhhhhhhhc
Confidence                           5567777777776665544443333 3222111000000000 0000000000000000001111


Q ss_pred             ccccccccchHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 017429          275 KKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI  350 (371)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r  350 (371)
                      ..+.+++|.++......++..........+++.|..+      .|++..+++.+.+..+++.++++ ++.+++.||
T Consensus       234 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~------~g~s~~~~g~~~~~~~~~~~~~~-~~~g~l~d~  302 (455)
T TIGR00892       234 DFSLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKD------KGVDEYEAAFLLSIIGFVDIFAR-PSCGLIAGL  302 (455)
T ss_pred             chHHhcCchHHHHHHHHHHHHHHccchHHHHHHHHHH------cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHhcc
Confidence            1256788888887777776666666666777877754      58899999999999999999888 477888876

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.94  E-value=2.6e-25  Score=206.26  Aligned_cols=283  Identities=13%  Similarity=0.053  Sum_probs=201.3

Q ss_pred             HHHHHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHH
Q 017429           42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (371)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~  121 (371)
                      .++...+................|.+.+ .|++.++      .++..+++.++..+++++.|+++||+|||+++..+.++
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~------~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~  100 (438)
T TIGR00712        28 VFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGE------LGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL  100 (438)
T ss_pred             HHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhH------hHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHH
Confidence            3334444455555555556666777765 5999999      99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhH----HHHHHHHHHHHHHhhhccchhH-HHHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCc
Q 017429          122 VVIFNTLFGLS----VNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP  196 (371)
Q Consensus       122 ~~~~~~~~~~~----~~~~~~~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~  196 (371)
                      .+++.++.+..    ++++.+.+.|++.|++.+...+ ....+.|++|+++|++++++.+.+..+|..++|.+.+.+.+.
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~  180 (438)
T TIGR00712       101 SAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAW  180 (438)
T ss_pred             HHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence            88888877654    4677788999999999887766 488899999999999999999999999999998887765431


Q ss_pred             CCCCCCcccccccccCccchhHHHHHHHHHHHH-HHHHhhccccccCCCCCCccchhhhhhhhhhhhhhhhhcccCCc-c
Q 017429          197 AEKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREAT-P  274 (371)
Q Consensus       197 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  274 (371)
                                     ..+|+..+++.++..++. ++..+++||+++....++.++... +..++..++ .+.+.+.+. .
T Consensus       181 ---------------~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~  243 (438)
T TIGR00712       181 ---------------FNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEYRN-DYPDDYNEK-AEQELTAKEIF  243 (438)
T ss_pred             ---------------hhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhccc-ccccccccc-cccccchHHHH
Confidence                           345666667766665554 445666787654321111000000 000000000 000000000 1


Q ss_pred             ccccccccchHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 017429          275 KKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPI  354 (371)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~  354 (371)
                      .+..++++.++...+..++......+...+.|.|+.+.     .|+++.+++.......+..++++ ++.+++.||.+++
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-----~g~s~~~~~~~~~~~~~~~~ig~-~~~g~l~dr~~~~  317 (438)
T TIGR00712       244 MQYVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEV-----KHFALDKSSWAYFLYEYAGIPGT-LLCGWMSDKVFKG  317 (438)
T ss_pred             HHHHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHc-----cCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHhccC
Confidence            12467888888877766666666667778889998875     78999999999999999999988 5889999998543

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.94  E-value=1e-24  Score=200.08  Aligned_cols=270  Identities=19%  Similarity=0.134  Sum_probs=192.0

Q ss_pred             ChhHHHHHHHHHHHhhcccccchhhHHH-HHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHH
Q 017429           39 PITELFSIWIIVLCTALPISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM  117 (371)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~  117 (371)
                      .++.+..+.+..++..++..+..+.+|. +.+++|.++.+      .|++.+++.++..+++++.|+++||+|||++++.
T Consensus        13 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~------~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~   86 (399)
T PRK05122         13 LTLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFL------AGLVISLQYLATLLSRPHAGRYADTLGPKKAVVF   86 (399)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHH------HHHHHHHHHHHHHHhchhhHhHHhccCCcchHHH
Confidence            3466777888888888888888999986 56889999999      9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhH--------HHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHh
Q 017429          118 GTASVVIFNTLFGLS--------VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPA  188 (371)
Q Consensus       118 ~~~~~~~~~~~~~~~--------~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~  188 (371)
                      +.++.+++.+.+.++        .+++.+++.|+++|++.+...+. ..++.|++|+++|++++++.+.+..+|..+||.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~  166 (399)
T PRK05122         87 GLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAP  166 (399)
T ss_pred             HHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHH
Confidence            998887776655442        25678899999999998887775 888999999999999999999999999999999


Q ss_pred             hhhhhcCcCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhhhhhhhhc
Q 017429          189 LGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEE  268 (371)
Q Consensus       189 i~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (371)
                      +++.+.+                .++|+..+++..+..++..+.....|+.++.   ++++                   
T Consensus       167 l~~~l~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-------------------  208 (399)
T PRK05122        167 LGVLLYH----------------WGGLAGLGLLIMLLALLGLLLARPRPAVPPV---KGER-------------------  208 (399)
T ss_pred             HHHHHHH----------------cccHHHHHHHHHHHHHHHHHHHhcCCCCCCC---Cccc-------------------
Confidence            9999987                5566666565555444333333222322110   0000                   


Q ss_pred             ccCCccccccccccchHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 017429          269 GREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLE  348 (371)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~  348 (371)
                          .+.++.++  +.+.......+..........+.+.|..+      .|+  ...+...+..+++.+++. +..+++.
T Consensus       209 ----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~~~~~~~~~~~~-~~~g~l~  273 (399)
T PRK05122        209 ----LPFRRVLG--RVWPYGMGLALASIGFGTIATFITLYYAA------RGW--DGAALALTLFGVAFVGAR-LLFGNLI  273 (399)
T ss_pred             ----hhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------ccc--ccchHHHHHHHHHHHHHH-HHHHHHH
Confidence                00111111  11222222222233334445566666543      344  234566677777888877 4788999


Q ss_pred             HHhchhHHHHHHHHhhhhc
Q 017429          349 RILGPIMVARIAGVNFEHS  367 (371)
Q Consensus       349 ~r~~~~~~~~~~~~~~~~~  367 (371)
                      ||+++|+.+..+..+..++
T Consensus       274 ~r~~~~~~~~~~~~~~~~~  292 (399)
T PRK05122        274 NRLGGLRVAIVSLLVEILG  292 (399)
T ss_pred             HHhccHHHHHHHHHHHHHH
Confidence            9999999887776655544

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.94  E-value=1.4e-24  Score=197.43  Aligned_cols=267  Identities=16%  Similarity=0.162  Sum_probs=195.4

Q ss_pred             HHHHHhhcccccchhhHHH-HHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHH-HHHHHHHH
Q 017429           48 IIVLCTALPISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM-GTASVVIF  125 (371)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~-~~~~~~~~  125 (371)
                      +..++..++.+...|.+|. +.+++|.++.+      .|++.+++.+...+.+++.|+++||+||||.++. +.+...++
T Consensus         4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~   77 (375)
T TIGR00899         4 LVAFLTGIAGALQFPTLSLFLSEEVRARPAM------IGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALA   77 (375)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHcccCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence            3456677777788898885 46789999999      9999999999999999999999999999887654 56666677


Q ss_pred             HHHHHhHHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhh--hHhhhhhhhhHHhHHHhhhhhhcCcCCCCCC
Q 017429          126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALG--LSTVSTAWGIGLIIGPALGGFLAQPAEKYPN  202 (371)
Q Consensus       126 ~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~--~~~~~~~~~~g~~~g~~i~~~l~~~~~~~~~  202 (371)
                      .++++++++++.+++.|++.|.+.+...|. .++..|..|+++|++.  .+....+.++|..+||.+++.+.+       
T Consensus        78 ~~~~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~-------  150 (375)
T TIGR00899        78 CLLFAWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLAL-------  150 (375)
T ss_pred             HHHHHhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHH-------
Confidence            778888899999999999988876666665 7888898888777654  577778889999999999999987       


Q ss_pred             cccccccccCccchhHHHHHHHHHHHHHH-HHhhccccccCCCCCCccchhhhhhhhhhhhhhhhhcccCCccccccccc
Q 017429          203 LFSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKN  281 (371)
Q Consensus       203 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (371)
                               .++|+.++++.+++.++..+ ..+++||.+++..++.+                       ..+.++.+++
T Consensus       151 ---------~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~  198 (375)
T TIGR00899       151 ---------GFGFTVMFLTAALAFVLCGVLVWLFLPSYPRGAPGALT-----------------------RLEVRGLLAS  198 (375)
T ss_pred             ---------hcccHHHHHHHHHHHHHHHHHHHHhCCCcccCcccccC-----------------------cchhhhhhcC
Confidence                     56677777887776655544 34557876543211100                       0112234566


Q ss_pred             cchHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHH
Q 017429          282 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG  361 (371)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~  361 (371)
                      ++++......++...........+|.|..+.     +|.++.+.+.+.....+...++. ++.+++.||+++|+.+..+.
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~g~~~~~~~~~~~~~~-~~~g~l~~r~g~~~~~~~~~  272 (375)
T TIGR00899       199 RDTRLLFVACTLMWGCNILYIINMPLLIIHE-----LGLPDKLAGLMMGTAAGLEIPFM-LLAGYLIKRFGKRRLMLLAA  272 (375)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhhhHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHH-HhHHHHHHHhcchhHHHHHH
Confidence            6666555544444443344455667666544     68889999988877766666666 57899999999999877665


Q ss_pred             Hhhh
Q 017429          362 VNFE  365 (371)
Q Consensus       362 ~~~~  365 (371)
                      +...
T Consensus       273 ~~~~  276 (375)
T TIGR00899       273 LAGV  276 (375)
T ss_pred             HHHH
Confidence            5433

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK12382 putative transporter; Provisional

Probab=99.94  E-value=1.7e-24  Score=198.21  Aligned_cols=269  Identities=17%  Similarity=0.178  Sum_probs=184.4

Q ss_pred             hHHHHHHHHHHHhhcccccchhhHHH-HHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHH
Q 017429           41 TELFSIWIIVLCTALPISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (371)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~  119 (371)
                      +.++.+....++..+..++..|.+|. +.+++|.|..+      .|++.+++.++..+++++.|+++||+|||++++.+.
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~------~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~   88 (392)
T PRK12382         15 FSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTM------VGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGM   88 (392)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHH------HHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHH
Confidence            44555666677777777888888885 56899999999      999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHH--------hHHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhh
Q 017429          120 ASVVIFNTLFG--------LSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG  190 (371)
Q Consensus       120 ~~~~~~~~~~~--------~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~  190 (371)
                      +...++.+.+.        ..++++.+++.|+++|++.+...+. .+++.|++|+++|++++++.+.+..+|..+||.++
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~  168 (392)
T PRK12382         89 LACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLG  168 (392)
T ss_pred             HHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHH
Confidence            87766544322        1357889999999999998877775 88999999999999999999999999999999999


Q ss_pred             hhhcCcCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhhhhhhhhccc
Q 017429          191 GFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGR  270 (371)
Q Consensus       191 ~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (371)
                      +.+.+                .++|+..+.+..+..++........||.+++   +++ ++                   
T Consensus       169 ~~l~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~-------------------  209 (392)
T PRK12382        169 LLLHS----------------HFGFAALALTTMVLPLLAWAFNGTVRKVPAH---AGE-RP-------------------  209 (392)
T ss_pred             HHHHh----------------ccChHHHHHHHHHHHHHHHHHHHhccCCCCC---ccc-Cc-------------------
Confidence            99987                5566655554443333322222222332111   000 00                   


Q ss_pred             CCccccccccccchHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 017429          271 EATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI  350 (371)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r  350 (371)
                         +.++..+  .++...+..++..........+.+.|..+      .|++  +.+......+++.++++ +..+++.||
T Consensus       210 ---~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~------~~~~--~~~~~~~~~~~~~~~~~-~~~g~l~~r  275 (392)
T PRK12382        210 ---SLWSVVG--LIWKPGLGLALQGVGFAVIGTFVSLYFAS------KGWA--MAGFTLTAFGGAFVLMR-VLFGWMPDR  275 (392)
T ss_pred             ---hHHHHHH--HHHHhHHHHHHHHHHHhHHHHHHHHHHHh------cCCc--hhHHHHHHHHHHHHHHH-HHHHHHHHh
Confidence               0011111  11111111222222333444556666543      3443  34555666777777777 578899999


Q ss_pred             hchhHHHHHHHHhhhhcc
Q 017429          351 LGPIMVARIAGVNFEHSV  368 (371)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~  368 (371)
                      +++|+.+..+..+..++.
T Consensus       276 ~g~~~~~~~~~~~~~~~~  293 (392)
T PRK12382        276 FGGVKVAIVSLLVETVGL  293 (392)
T ss_pred             cCCCeehHHHHHHHHHHH
Confidence            999988877776655543

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.93  E-value=3e-24  Score=197.64  Aligned_cols=286  Identities=22%  Similarity=0.315  Sum_probs=198.9

Q ss_pred             hHHHHHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHH
Q 017429           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (371)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~  120 (371)
                      +.....++..++..+......+.+|.+.+++|.+..+. .....+++.+++.++..+++++.|+++||+|||++++.+.+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~   92 (408)
T PRK09874         14 RNLTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSA-LNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSAL   92 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchh-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHH
Confidence            34556677788888888888999999999999886541 01124888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHhhhccchhHHHHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCC
Q 017429          121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY  200 (371)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~  200 (371)
                      ..+++.+++...++++.+++.|++.|++.+.......++.|.+|+++|+++.++......+|..++|.+++.+.+     
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~-----  167 (408)
T PRK09874         93 GMGIVMVLMGLAQNIWQFLILRALLGLLGGFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLAD-----  167 (408)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence            999999888889999999999999999766554457888999999999999999999999999999999999987     


Q ss_pred             CCcccccccccCccchhHHHHHHHHHHHHHH-HHhhccccccCCCCCCccchhhhhhhhhhhhhhhhhcccCCccccccc
Q 017429          201 PNLFSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLL  279 (371)
Q Consensus       201 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (371)
                                 .++|+..+.+.++..++..+ ..+++||+++..++++ . ...                   ....+.+
T Consensus       168 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~-------------------~~~~~~~  215 (408)
T PRK09874        168 -----------SYGLRPVFFITASVLFLCFLVTLFCIRENFQPVSKKE-M-LHM-------------------REVVTSL  215 (408)
T ss_pred             -----------HhCHHHHHHHHHHHHHHHHHHHHHHhccCcccccchh-h-hHH-------------------HHHHHhC
Confidence                       45566666666665554443 3455666532211100 0 000                   0112334


Q ss_pred             cccchHHHHH-HHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHH
Q 017429          280 KNWPLMSSII-VYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVAR  358 (371)
Q Consensus       280 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~  358 (371)
                      ++++++.... ...+..........+++.|..+...  ..+......+.+....+++.+++. +..+++.||+++|+.+.
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~l~~~~~~-~~~g~l~dr~g~~~~~~  292 (408)
T PRK09874        216 KNPKLVLSLFVTTLIIQVATGSIAPILTLYVRELAG--NVSNIAFISGMIASVPGVAALLSA-PRLGKLGDRIGPEKILI  292 (408)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhccccchhHH
Confidence            5565544332 2233333333444556666544210  001011234555666677777777 47789999999999887


Q ss_pred             HHHHhhhhc
Q 017429          359 IAGVNFEHS  367 (371)
Q Consensus       359 ~~~~~~~~~  367 (371)
                      .+.....++
T Consensus       293 ~~~~~~~~~  301 (408)
T PRK09874        293 TALIFSVLL  301 (408)
T ss_pred             HHHHHHHHH
Confidence            776655443

>TIGR00896 CynX cyanate transporter

Probab=99.93  E-value=2.5e-24  Score=194.37  Aligned_cols=262  Identities=14%  Similarity=0.055  Sum_probs=197.2

Q ss_pred             hcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHHhHH
Q 017429           54 ALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSV  133 (371)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~  133 (371)
                      ........+.+|.+.+++|.+.++      .++..+++.++..+++++.|+++||+|||+++.++.++..++.+.+ ..+
T Consensus        13 ~~~~~~~~~~lp~l~~~~~~s~~~------~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~   85 (355)
T TIGR00896        13 RPALTSVGPLLPQIRSALGMSFSV------AGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAP   85 (355)
T ss_pred             cCccccCcccHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hhc
Confidence            334466788999999999999999      9999999999999999999999999999999999998888887777 678


Q ss_pred             HHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCCCCcccccccccC
Q 017429          134 NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGK  212 (371)
Q Consensus       134 ~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~~~~~g~~~~~~~  212 (371)
                      +.+.+++.|++.|++.+...+. ..++.|.+| ++|++++++.+.+..+|..+++.+++.+.+.       .       .
T Consensus        86 ~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~-------~-------~  150 (355)
T TIGR00896        86 GTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQH-------S-------G  150 (355)
T ss_pred             cHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-------h-------h
Confidence            8899999999999998876664 778888886 5799999999999999999999999888761       1       1


Q ss_pred             ccchhHHHHHHHHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhhhhhhhhcccCCccccccccccchHHHHHHHH
Q 017429          213 FPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYC  292 (371)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (371)
                      .+|+..+...++..++..  ..++|+.+++.++++                     .......++.+++|.++...+..+
T Consensus       151 ~~w~~~f~~~~~~~~~~~--~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~  207 (355)
T TIGR00896       151 GHWQQALAWWALPALLAL--LAWIPQVRRRVAANQ---------------------TTTRLTPVRIWRSPLAWQVTVFFG  207 (355)
T ss_pred             hhHHHHHHHHHHHHHHHH--HHHhhhhccccCCCC---------------------CCCCCCCchhhcCHhHHHHHHHHH
Confidence            125655555444333222  233454432111100                     001123456778888877766666


Q ss_pred             HHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHh-chhHHHHHHHHhhhhc
Q 017429          293 VFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL-GPIMVARIAGVNFEHS  367 (371)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~~~~~~~~~~~~~~~  367 (371)
                      +..........+.|.|..+      .|+++.+.+.+.+...++.++++ ++.+++.||+ ++|+.+..+.++.+++
T Consensus       208 ~~~~~~~~~~~~lp~~~~~------~g~~~~~~g~~~~~~~~~~i~~~-~~~g~l~dr~~~~~~~~~~~~~~~~~~  276 (355)
T TIGR00896       208 LQSGLYYSLIGWLPAILIS------HGASAATAGSLLALMQLAQAASA-LLIPALARRVKDQRGIVAVLAVLQLVG  276 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHHHHHHHHHHH-HhHHHHHhhhccchHHHHHHHHHHHHH
Confidence            6666666777788888754      58899999999999999999999 4788999999 4555655555544443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.93  E-value=6.2e-25  Score=201.41  Aligned_cols=277  Identities=16%  Similarity=0.123  Sum_probs=217.3

Q ss_pred             hhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 017429           62 PFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLT  141 (371)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (371)
                      +.+..+.+|.+....+      .+.+.+++.++++++.+++|.+.||++-.+.+....+++.+..++....+|++.+++.
T Consensus        67 a~l~g~~edl~~~~~~------l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ial  140 (495)
T KOG2533|consen   67 ASLSGLKEDLKLVGNQ------LGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIAL  140 (495)
T ss_pred             HHHcCCccccchhhhh------hhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            3333455788888888      9999999999999999999999999998888888888888888888889999999999


Q ss_pred             HHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCCCCcccccccccCccchhHHH
Q 017429          142 RFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCL  220 (371)
Q Consensus       142 r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~  220 (371)
                      |++.|+.++...|. ..+++.++.+++|++.++++.++..+|+++|++++..+... .+.....|||+.         |+
T Consensus       141 r~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~-~~~~~~~gW~~~---------Fi  210 (495)
T KOG2533|consen  141 RFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKL-NGSGGLAGWRWL---------FI  210 (495)
T ss_pred             HHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhh-cCCCCcCCceee---------hh
Confidence            99999999998886 99999999999999999999999999999999999987552 222224455444         47


Q ss_pred             HHHHHHHH-HHHHHhhccccccCCCCCCccch-hhhhhhhhhhhhhhhhcccCCccccccccccchHHHHHHHHHHHhhh
Q 017429          221 CISLFAFG-VTIAAFWLPETLHRHNDDDDSCD-VSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHD  298 (371)
Q Consensus       221 ~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (371)
                      +.+++.++ .++..+++|+.|.+..-.+++++ ...++.++......+++ ..+..+++.+++|.+|...+..++.....
T Consensus       211 I~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~dp~vw~~~l~~~~~~lv~  289 (495)
T KOG2533|consen  211 IEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELVVERLRESPSGGIENK-FKWKGFKEALKDPGVWPFSLCYFFLKLVN  289 (495)
T ss_pred             HHHHHHHHHHheEEEEecCChhhccccchHHHHHHHHHHHhccCCCcccc-cCHHHHHHHHhchhHHHHHHHHHHHhhcc
Confidence            77666665 45667889998875432222211 11122222222222222 45567788999999999999999999999


Q ss_pred             hhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH----hchhHHHHHHH
Q 017429          299 MAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI----LGPIMVARIAG  361 (371)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r----~~~~~~~~~~~  361 (371)
                      .++.+++|.|+..-     .|++..+++.+.....++++++. ++.+.+.||    .++|.......
T Consensus       290 ~~~~~~lpl~l~~~-----~~~s~~~a~~ls~~~~~~g~v~~-i~ag~lsdr~~~~~~~~~~~~~~~  350 (495)
T KOG2533|consen  290 YGFSYWLPLYLKSN-----GGYSELQANLLSTPYDVGGIVGL-ILAGYLSDRLKTIFARRLLFIVFL  350 (495)
T ss_pred             ccHHHHHHHHHHcC-----CCcChHHhccccchHHhhhHHHH-HHHHHHHHHHhhhHHHHHHHHHHH
Confidence            99999999999873     68999999999999999999988 588999999    45554444333

>PRK10054 putative transporter; Provisional

Probab=99.93  E-value=1.1e-24  Score=199.14  Aligned_cols=278  Identities=14%  Similarity=0.173  Sum_probs=206.9

Q ss_pred             hHHHHHHHHHHHhhcccccchhhHHH-HHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHH
Q 017429           41 TELFSIWIIVLCTALPISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (371)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~  119 (371)
                      +.++.+.+..++...+.+...+.+|. +.+++|.+..+      .|++.+++.++..+++++.|+++||+|||++++++.
T Consensus         7 ~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~------~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~   80 (395)
T PRK10054          7 RSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDL------IGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAI   80 (395)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHH
Confidence            34555666777778888888888875 55789999999      999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCC
Q 017429          120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE  198 (371)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~  198 (371)
                      ++.+++.++.++.++++.+++.|.+.|.+.+...+. ..+..|..|+++|++++++.+...++|..++|.+++.+.+   
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~---  157 (395)
T PRK10054         81 TAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM---  157 (395)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence            999999988999999999988998888776666665 8999999999999999999999999999999999998863   


Q ss_pred             CCCCcccccccccCccchhHHHHHHHHHHHHHH-HHhhccccccCCCCCCccchhhhhhhhhhhhhhhhhcccCCccccc
Q 017429          199 KYPNLFSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKS  277 (371)
Q Consensus       199 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (371)
                                    .+|+.++...+++.++.++ ..+++||+++++++++   +.                   ....++
T Consensus       158 --------------~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~---~~-------------------~~~~~~  201 (395)
T PRK10054        158 --------------QSINLPFWLAAICSAFPLVFIQIWVQRSEKAIATET---GS-------------------VWSPSV  201 (395)
T ss_pred             --------------hccCcHHHHHHHHHHHHHHHHHHHHhccccccccch---hh-------------------hhhhhh
Confidence                          2345555666655555433 3444565432211000   00                   011256


Q ss_pred             cccccchHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhchhHHH
Q 017429          278 LLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVA  357 (371)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~  357 (371)
                      .+++|+++...+..++.......+..+.+.|....   .+.+.+....+.++....+.....+ ...+++.||.++|+.+
T Consensus       202 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~l  277 (395)
T PRK10054        202 LLQDKALLWFTCSGFLASFVSGAFASCISQYVMVV---ADSDFAEKVVAVVLPVNAAMVVSLQ-YSVGRRLNAANIRPLM  277 (395)
T ss_pred             hccCceehHHHHHHHHHHHHHHHhhhhHHHHHHHh---cccchHHHHHHHHHHhhhhheeeeh-hHHHHHHccCCchhHH
Confidence            77888888777766665555554545556555332   1256677778888888777777766 4667788899999888


Q ss_pred             HHHHHhhhhc
Q 017429          358 RIAGVNFEHS  367 (371)
Q Consensus       358 ~~~~~~~~~~  367 (371)
                      ..++++..++
T Consensus       278 ~~~~~~~~~~  287 (395)
T PRK10054        278 TAGTLCFVIG  287 (395)
T ss_pred             HHHHHHHHHH
Confidence            7777655544

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.93  E-value=5.8e-25  Score=202.85  Aligned_cols=276  Identities=14%  Similarity=0.084  Sum_probs=204.9

Q ss_pred             HHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHH
Q 017429           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (371)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~  124 (371)
                      .+....++..+......+.+|.+.++++.+..+      .|++.+.+.++..+++++.|+++||+|||+++..+.++.++
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~   94 (417)
T PRK10489         21 AVFIARFISIFGLGLLGVAVPVQIQMMTGSTLQ------VGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGL   94 (417)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHH
Confidence            344445566666677788889999999888888      99999999999999999999999999999999998887777


Q ss_pred             HHHHHHh-----HHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCC
Q 017429          125 FNTLFGL-----SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE  198 (371)
Q Consensus       125 ~~~~~~~-----~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~  198 (371)
                      +.+..+.     .++++.+++.|++.|++.+...+. .+++.|++|+++|+++.++.+....+|..+||.+++.+.+   
T Consensus        95 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~---  171 (417)
T PRK10489         95 GFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIA---  171 (417)
T ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHH---
Confidence            6655432     457888999999999988777665 8899999999999999999999999999999999999987   


Q ss_pred             CCCCcccccccccCccchhHHHHHHHHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhhhhhhhhcccCCcccccc
Q 017429          199 KYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSL  278 (371)
Q Consensus       199 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (371)
                                   ..+|++.+.+.++..++..+..+.+||++++.+++++.   . +              +....++..
T Consensus       172 -------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~-~--------------~~~~~~~~~  220 (417)
T PRK10489        172 -------------AGGVAWNYGLAAAGTFITLLPLLRLPALPPPPQPREHP---L-R--------------SLLAGFRFL  220 (417)
T ss_pred             -------------HHhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCcccccc---h-H--------------HHHHHHHHH
Confidence                         44555555666666665566666777754322111000   0 0              001123445


Q ss_pred             ccccchHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHH
Q 017429          279 LKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVAR  358 (371)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~  358 (371)
                      +++|.++...+..++... ..+...++|.|..+.     +|.++.+.|.+.+..+++.+++.. +.+++.||.++++.+.
T Consensus       221 ~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~-----~g~~~~~~g~~~~~~~~g~~ig~~-~~~~l~~~~~~~~~l~  293 (417)
T PRK10489        221 LASPVVGGIALLGGLLTM-ASAVRVLYPALADEV-----WQMGAAQIGLLYAAVPLGAALGAL-TSGWLAHSARPGLLML  293 (417)
T ss_pred             HcChHHHHHHHHHHHHHH-HHhHHHhhHHHHHhc-----cCCChhHhHHHHHHHHHHHHHHHH-HHHHhhhccCcchHHH
Confidence            677776555444443322 345566778887765     788999999999999999999884 7889999877777776


Q ss_pred             HHHHhhhhc
Q 017429          359 IAGVNFEHS  367 (371)
Q Consensus       359 ~~~~~~~~~  367 (371)
                      .+.++..++
T Consensus       294 ~~~~~~~~~  302 (417)
T PRK10489        294 LSTLGSFLA  302 (417)
T ss_pred             HHHHHHHHH
Confidence            665554443

>TIGR00898 2A0119 cation transport protein

Probab=99.93  E-value=7.5e-25  Score=207.15  Aligned_cols=272  Identities=16%  Similarity=0.201  Sum_probs=192.4

Q ss_pred             hhHHHHHHhhccc---cccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHHhHHHHHHH
Q 017429           62 PFLYFMIKDFQIA---KREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMA  138 (371)
Q Consensus        62 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~  138 (371)
                      +..|.+.+|+|++   ..+      .++..+++.++..+++++.|+++||+|||++++++.++.+++.++.+++++++.+
T Consensus       110 ~~~~~i~~e~~l~c~~~~~------~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~  183 (505)
T TIGR00898       110 TFSSTIVTEWDLVCEDAWK------VDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVF  183 (505)
T ss_pred             cccccEEEEecceechHHH------HHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHH
Confidence            5567888999998   667      8999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCCCCcccccccccCccchh
Q 017429          139 VLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFL  217 (371)
Q Consensus       139 ~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~~~~~g~~~~~~~~~~~~  217 (371)
                      ++.|++.|++.+...+. ..++.|++|+++|+++.++.+.+..+|.+++|.+++.+.+                   ||.
T Consensus       184 ~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-------------------wr~  244 (505)
T TIGR00898       184 LVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD-------------------WRW  244 (505)
T ss_pred             HHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH-------------------HHH
Confidence            99999999998887775 9999999999999999999999999999999998766542                   566


Q ss_pred             HHHHHHHHHHHHHHHHhhccccccCCCCCCccchhhh--hhhhhhh----------h--hhhhhcccCCccccccccccc
Q 017429          218 PCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSY--DALESAS----------A--EVKEEEGREATPKKSLLKNWP  283 (371)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~--~~~~~~~----------~--~~~~~~~~~~~~~~~~~~~~~  283 (371)
                      .+++.++..++..+..+++||++++...+.+.+++.+  ++..+..          .  +.++++...+...++++++|.
T Consensus       245 ~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  324 (505)
T TIGR00898       245 LQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPN  324 (505)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChH
Confidence            6677777777666667889999876443332222111  0000000          0  000001111235677888888


Q ss_pred             hHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHh
Q 017429          284 LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVN  363 (371)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~  363 (371)
                      ++...+...+..+.........+.+..      .++.+.....   ...++..+++. ++.+++.||+|||+.+..+.++
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~---~~~~~~~i~~~-~~~~~l~dr~grr~~~~~~~~~  394 (505)
T TIGR00898       325 LRKTTLCLMMLWFTTAFSYYGLVLDLG------NLGGNIYLDL---FISGLVELPAK-LITLLLIDRLGRRYTMAASLLL  394 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccc------ccCCChHHHH---HHHHHHHHHHH-HHHHHHHHHhCCHHHHHHHHHH
Confidence            777665544433322222112222221      1444433222   33455666666 4778999999999998887766


Q ss_pred             hhhcc
Q 017429          364 FEHSV  368 (371)
Q Consensus       364 ~~~~~  368 (371)
                      ..+++
T Consensus       395 ~~~~~  399 (505)
T TIGR00898       395 AGVAL  399 (505)
T ss_pred             HHHHH
Confidence            55543

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.93  E-value=5.4e-24  Score=194.86  Aligned_cols=270  Identities=17%  Similarity=0.206  Sum_probs=198.9

Q ss_pred             HHHHHHHhhcccccchhhHH-HHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHH
Q 017429           46 IWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (371)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~  124 (371)
                      +....++.........|+++ ++.+++|.+..+      .|+..+...++..+.+++.|+++||+|||+++..+.++.++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~   88 (400)
T PRK11646         15 LLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVM------VGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAA   88 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHH------HHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHH
Confidence            44555566666666777777 456889999999      99999999999999999999999999999999999999999


Q ss_pred             HHHHHHhHHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCCCCc
Q 017429          125 FNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNL  203 (371)
Q Consensus       125 ~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~~~~  203 (371)
                      +.+.+.+.++++.+++.|++.|++.+...+. .+++.|.+|+++|++++++.+...++|..+||.+++.+.+        
T Consensus        89 ~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~--------  160 (400)
T PRK11646         89 GFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQ--------  160 (400)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence            9999999999999999999999988877775 8999999999999999999999999999999999999873        


Q ss_pred             ccccccccCccchhHHHHHHHHHHHHH-HHHhhccccccCCCCCCccchhhhhhhhhhhhhhhhhcccCCcccccccccc
Q 017429          204 FSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNW  282 (371)
Q Consensus       204 ~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (371)
                               ++|+..+++.++..++.. +..++.||.+..   +. + +                  +....+++.+++|
T Consensus       161 ---------~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~~---~~-~-~------------------~~~~~~~~~~~~~  208 (400)
T PRK11646        161 ---------YDFRLVCATGAVLFVLAAAFNAWLLPAYKLS---TV-R-T------------------PVREGMTRVLRDK  208 (400)
T ss_pred             ---------hhHHHHHHHHHHHHHHHHHHHHHhCCccccc---cc-c-h------------------hhHHHHHHHHcCc
Confidence                     345566666655544433 334455542210   00 0 0                  0011345667788


Q ss_pred             chHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHH
Q 017429          283 PLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGV  362 (371)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~  362 (371)
                      +++...+..+...........+.|.|.++.      +.++.+.+.+.+..++.......+..++.+||.+.++.+..+++
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~------~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  282 (400)
T PRK11646        209 RFVTYVLTLTGYYMLAVQVMLMLPIMVNDI------AGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLL  282 (400)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhhHHhh------cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence            877655554444333333445667766553      34678888888887777776665666777777776666666665


Q ss_pred             hhhhc
Q 017429          363 NFEHS  367 (371)
Q Consensus       363 ~~~~~  367 (371)
                      +..++
T Consensus       283 ~~~~~  287 (400)
T PRK11646        283 IMSLS  287 (400)
T ss_pred             HHHHH
Confidence            55444

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.93  E-value=1.1e-23  Score=191.92  Aligned_cols=274  Identities=15%  Similarity=0.125  Sum_probs=201.9

Q ss_pred             HHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHH-HHHH
Q 017429           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT-ASVV  123 (371)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~-~~~~  123 (371)
                      .+.+..+......+...|++|.+.+++|.+..+      +|++.+++.+...++++++|+++||+||++...... ....
T Consensus         8 ~l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~------ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~   81 (382)
T TIGR00902         8 WLALGFFGYFCAYGIFLPFFPAWLKGIGLGEEM------IGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASA   81 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            355566666777788899999999999999999      999999999999999999999999999854432221 1111


Q ss_pred             HHH-HHHHhHHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCCC
Q 017429          124 IFN-TLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYP  201 (371)
Q Consensus       124 ~~~-~~~~~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~~  201 (371)
                      +.. ..+..+++++.+++.|.+.|.+.+...|. .++..|.  +++|++.++......++|.+++|.+++.+.+      
T Consensus        82 l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~------  153 (382)
T TIGR00902        82 IFAAAFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIG------  153 (382)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHH------
Confidence            222 23446788999999999999877666665 6666553  5678999999999999999999999999998      


Q ss_pred             CcccccccccCccchhHHHHHHHHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhhhhhhhhcccCCccccccccc
Q 017429          202 NLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKN  281 (371)
Q Consensus       202 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (371)
                                .++|+..+.+.....++.++ .+.++|++++..++++  +                +....+..++++|+
T Consensus       154 ----------~~g~~~~f~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~----------------~~~~~~~~~~~l~~  204 (382)
T TIGR00902       154 ----------MFDEQNILAILTAGLAFMLI-GFLIKPTIPPKDAIPE--D----------------ESQGDSAFIALLKN  204 (382)
T ss_pred             ----------HcChhHHHHHHHHHHHHHHH-HHHcCCCCCCCccccc--c----------------ccccchhHHHHHcC
Confidence                      55566555555444332222 3333433211111000  0                00111235678899


Q ss_pred             cchHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHH
Q 017429          282 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG  361 (371)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~  361 (371)
                      |+++...+..++.......+..+.|.|.++      .|.++.++|.+++...++.++.. ...+++.||+++|+.+..+.
T Consensus       205 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~------~g~s~~~~g~l~~~~~~~~i~~~-~~~~~l~~r~g~~~~l~~~~  277 (382)
T TIGR00902       205 PMNLRFLAAVCLIQGAHAAYYGFSAIYWQA------AGISASATGLLWGIGVLAEIIIF-AFSNKLFQNCSARDLLLISA  277 (382)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------CCCCHhHHHHHHHHHHHHHHHHH-HHhHHHHhhCCHHHHHHHHH
Confidence            999998888888888888888888888864      69999999999998888888877 58899999999999998888


Q ss_pred             Hhhhhcc
Q 017429          362 VNFEHSV  368 (371)
Q Consensus       362 ~~~~~~~  368 (371)
                      +...+..
T Consensus       278 ~~~~~~~  284 (382)
T TIGR00902       278 IACVGRW  284 (382)
T ss_pred             HHHHHHH
Confidence            8876553

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.93  E-value=3.4e-24  Score=196.10  Aligned_cols=253  Identities=17%  Similarity=0.241  Sum_probs=209.9

Q ss_pred             HHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHH
Q 017429           68 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSV--NFWMAVLTRFLL  145 (371)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~r~l~  145 (371)
                      ..+++++.++      .+++.++++.|+++++++.|+++||+|-|+++..+.++.++..++.+.+.  +++.+++.|+++
T Consensus        65 ~~~~~ws~~~------k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lq  138 (466)
T KOG2532|consen   65 AGEYDWSSTE------KGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQ  138 (466)
T ss_pred             CceecCCHHH------HHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHh
Confidence            3467788888      99999999999999999999999999999999999999999999988864  456789999999


Q ss_pred             hhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCCCCcccccccccCccchhHHHHHHH
Q 017429          146 GSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISL  224 (371)
Q Consensus       146 G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  224 (371)
                      |++.|...|+ ..+.+.|.|+++|++..++...+..+|.+++-+++|++.+.               .+||+.+|++.++
T Consensus       139 Gl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s---------------~~GW~sifY~~g~  203 (466)
T KOG2532|consen  139 GLGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCES---------------SLGWPSIFYVFGI  203 (466)
T ss_pred             HHHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc---------------CCCCchHHHHHHH
Confidence            9999998886 99999999999999999999999999999999999999982               2566677788888


Q ss_pred             HHHHHHHHHh-hccccccCCCCCCccchhhhhhhhhhhhhhhhhcc--cCCccccccccccchHHHHHHHHHHHhhhhhH
Q 017429          225 FAFGVTIAAF-WLPETLHRHNDDDDSCDVSYDALESASAEVKEEEG--REATPKKSLLKNWPLMSSIIVYCVFSLHDMAY  301 (371)
Q Consensus       225 ~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (371)
                      .+++..++++ +..|+|.+++.-.+      +|.+.......+++.  ..+.+++++++++.+|...+..+...+....+
T Consensus       204 ~g~i~~~~w~~~~~d~P~~h~~is~------~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l  277 (466)
T KOG2532|consen  204 VGLIWFILWFLFYSDSPSKHPNISE------KELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLL  277 (466)
T ss_pred             HHHHHHHHHHHHhcCCcccCCCCCH------HHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence            8887766544 44555554322211      112222121111111  15778999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 017429          302 SEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGP  353 (371)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~  353 (371)
                      ..+.|.|+.+.     +|++..+.|++.++..+...+.. ++.+.++||..+
T Consensus       278 ~~y~PtY~~~V-----L~f~v~~~G~~salP~l~~~~~k-~~~g~lsD~l~~  323 (466)
T KOG2532|consen  278 LTYLPTYLKEV-----LGFDVRETGFLSALPFLAMAIVK-FVAGQLSDRLTF  323 (466)
T ss_pred             HHHhhHHHHHH-----hCCChhhhhHHHHHHHHHHHHHH-HHHHHHHHHHhh
Confidence            99999999998     89999999999999999999988 588999998865

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.92  E-value=8.2e-24  Score=199.58  Aligned_cols=304  Identities=14%  Similarity=0.113  Sum_probs=198.6

Q ss_pred             HHHHHHhhcc--cccchhhHHHHHHhhccccccccch-hhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHH
Q 017429           47 WIIVLCTALP--ISSLFPFLYFMIKDFQIAKREEDIG-SYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVV  123 (371)
Q Consensus        47 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~  123 (371)
                      .+..+..+.+  .+...+....+.++...+....... ...+++.+...++..+++++.|+++|++|||+.++++.+...
T Consensus        51 ~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~  130 (513)
T KOG0254|consen   51 ALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFL  130 (513)
T ss_pred             HHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            3334444443  4555566666655432222211100 125899999999999999999999999999999999999999


Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCCCC
Q 017429          124 IFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPN  202 (371)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~~~  202 (371)
                      ++.+++++++|+++++++|++.|+|.|..... +.+++|..|++.||...+..+....+|..++..++....+.      
T Consensus       131 iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~------  204 (513)
T KOG0254|consen  131 IGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKV------  204 (513)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccC------
Confidence            99999999999999999999999998887775 99999999999999999999999999999996665544430      


Q ss_pred             cccccccccCccchhHHHHHHHHHHHHHHHHhhccccccCCCCCCccchhhh--hhhhh------------hh-hhhhhh
Q 017429          203 LFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSY--DALES------------AS-AEVKEE  267 (371)
Q Consensus       203 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~--~~~~~------------~~-~~~~~~  267 (371)
                               .++||.++.+..+.+++..+..+++||+|++..++.+..+...  ..+..            .. ....+.
T Consensus       205 ---------~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~  275 (513)
T KOG0254|consen  205 ---------YAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEA  275 (513)
T ss_pred             ---------CccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhh
Confidence                     1467888888888888877778999999987655433222211  11110            00 000000


Q ss_pred             c-ccCCccccccccccchHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHH
Q 017429          268 E-GREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPF  346 (371)
Q Consensus       268 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~  346 (371)
                      . ......+.++++.....+..+...+..+++.+.......|....  .+..|.+... .......++..+++. .++..
T Consensus       276 ~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~i--f~~~g~~~~~-~~~~~~~~~v~~~~t-~~~~~  351 (513)
T KOG0254|consen  276 EVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTI--FKSAGLKSDT-FLASIILGVVNFLGT-LVATY  351 (513)
T ss_pred             hcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHH--HHhcCCCCch-HHHHHHHHHHHHHHH-HHHHH
Confidence            0 11111233444422333344444444444443333333333332  2223444332 333344445555555 35688


Q ss_pred             HHHHhchhHHHHHHHHhhhhccc
Q 017429          347 LERILGPIMVARIAGVNFEHSVA  369 (371)
Q Consensus       347 l~~r~~~~~~~~~~~~~~~~~~~  369 (371)
                      +.||.|||++++.+...+.++..
T Consensus       352 lvd~~gRr~lll~s~~~m~~~~~  374 (513)
T KOG0254|consen  352 LVDRFGRRKLLLFGAAGMSICLV  374 (513)
T ss_pred             HHHHhccHHHHHHhHHHHHHHHH
Confidence            99999999999999988887764

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.92  E-value=1.8e-23  Score=188.21  Aligned_cols=252  Identities=23%  Similarity=0.405  Sum_probs=214.7

Q ss_pred             HHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHH
Q 017429           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (371)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~  124 (371)
                      .+....+....+.....+..|.+.+++|.+..+      .+++.+...++..+++++.|+++||+|||+.+..+.++..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~   76 (352)
T cd06174           3 LLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQ------AGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFAL   76 (352)
T ss_pred             HHHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHH
Confidence            345566777788888899999999999999998      99999999999999999999999999999999999999999


Q ss_pred             HHHHHHhHHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCCCCc
Q 017429          125 FNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNL  203 (371)
Q Consensus       125 ~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~~~~  203 (371)
                      +.+.....++++.+++.|++.|++.+...+. ..++.|++|+|+|++.+++.+....+|..++|.+++.+.+        
T Consensus        77 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--------  148 (352)
T cd06174          77 GSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAE--------  148 (352)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHH--------
Confidence            9999999999999999999999998887775 9999999999999999999999999999999999999987        


Q ss_pred             ccccccccCccchhHHHHHHHHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhhhhhhhhcccCCccccccccccc
Q 017429          204 FSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWP  283 (371)
Q Consensus       204 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (371)
                              ..+|+..+.+.++..++..+...+.+                                            |.
T Consensus       149 --------~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------~~  176 (352)
T cd06174         149 --------SLGWRWLFLILAILGLLLALLLLFLL--------------------------------------------RL  176 (352)
T ss_pred             --------HhhHHHHHHHHHHHHHHHHHHHHHHH--------------------------------------------HH
Confidence                    45566666776666666555544443                                            34


Q ss_pred             hHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhchhH-HHHHHHH
Q 017429          284 LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIM-VARIAGV  362 (371)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~-~~~~~~~  362 (371)
                      ++...+..++..........+.+.+..+.     +|.+..+.+.......++..++. ++.+++.||.++|+ .+..+..
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~  250 (352)
T cd06174         177 LLLLALAFFLLSFGYYGLLTYLPLYLQEV-----LGLSAAEAGLLLSLFGLGGILGA-LLGGLLSDRLGRRRLLLLIGLL  250 (352)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhHHHHHHHH
Confidence            56666677777777777778888887665     58899999999999999999998 57889999999999 8877777


Q ss_pred             hhhhcc
Q 017429          363 NFEHSV  368 (371)
Q Consensus       363 ~~~~~~  368 (371)
                      +..++.
T Consensus       251 ~~~i~~  256 (352)
T cd06174         251 LAALGL  256 (352)
T ss_pred             HHHHHH
Confidence            666554

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.92  E-value=2.3e-23  Score=189.88  Aligned_cols=267  Identities=14%  Similarity=0.130  Sum_probs=195.7

Q ss_pred             HHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCc----hHHHHHHHHHHHH
Q 017429           50 VLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRK----PVIIMGTASVVIF  125 (371)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr----~~l~~~~~~~~~~  125 (371)
                      .+....+.+...|.+|.+.+++|.+..+      +|+..+++.++..++++++|+++||+|||    +.+.+...+.  .
T Consensus        13 ~~~~~~~~g~~~p~l~~~l~~~g~s~~~------iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~   84 (382)
T PRK11128         13 YFGYFFAYGVFLPFWSVWLKGQGYTPET------IGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--A   84 (382)
T ss_pred             HHHHHHHHHHHhhhHHHHHHhcCCCHHH------HHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--H
Confidence            4444556677889999999999999999      99999999999999999999999999994    3333222221  2


Q ss_pred             HHHHHhHHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCCCCcc
Q 017429          126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLF  204 (371)
Q Consensus       126 ~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~~~~~  204 (371)
                      .......++++.+++.|++.|++.+...+. .++..++  +++|+++.+......++|..+||.+++++.+         
T Consensus        85 ~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~---------  153 (382)
T PRK11128         85 VAFWFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVS---------  153 (382)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHH---------
Confidence            223334578999999999999987777775 6666665  4568888888888899999999999999998         


Q ss_pred             cccccccCccchhHHHHHHHHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhhhhhhhhcccCCccccccccccch
Q 017429          205 SSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPL  284 (371)
Q Consensus       205 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (371)
                             .++|+..++..++..++..+..++.||++++.++++   +                ..+....+++++|+|.+
T Consensus       154 -------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----------------~~~~~~~~~~i~~~~~~  207 (382)
T PRK11128        154 -------WFGEQAILWILTAGVASMLLGQLLRPTIMPQGESRQ---Q----------------ESAGWPAWKALLKEPTV  207 (382)
T ss_pred             -------HcChhHHHHHHHHHHHHHHHHHHccCCCCCcccccc---c----------------cccccchHHHHHcChhH
Confidence                   566777666666544444444444454322111000   0                00112356788899999


Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHhh
Q 017429          285 MSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVNF  364 (371)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~  364 (371)
                      +...+..++..........+.+.|..+      .|.++.+.|.+.+...++.++.. +..+++.||+++++.+..+.+..
T Consensus       208 ~~~~~~~~l~~~~~~~~~~~~~~~~~~------~g~s~~~~g~~~~~~~~~~~~~~-~~~g~l~~r~~~~~~l~~~~~~~  280 (382)
T PRK11128        208 WRFLLCVSLLQGSHAAYYGFSAIYWQA------AGYSASTIGYLWSLGVVAEVLIF-AFSNRLFRRWSARDLLLLSAICG  280 (382)
T ss_pred             HHHHHHHHHHHHHhHhHHHHHHHHHHH------CCCCHhHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHH
Confidence            888777777766666677777877743      68899999999998888777777 57889999999999988887776


Q ss_pred             hhcc
Q 017429          365 EHSV  368 (371)
Q Consensus       365 ~~~~  368 (371)
                      .++.
T Consensus       281 ~~~~  284 (382)
T PRK11128        281 VVRW  284 (382)
T ss_pred             HHHH
Confidence            6543

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.92  E-value=1.5e-23  Score=191.84  Aligned_cols=269  Identities=15%  Similarity=0.119  Sum_probs=189.1

Q ss_pred             hhcccccchhhHHHHHHhhcc--ccccccchhhhHHHHH-----HHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHH
Q 017429           53 TALPISSLFPFLYFMIKDFQI--AKREEDIGSYAGYVGS-----SFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF  125 (371)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~  125 (371)
                      +.++...+....+.+.+++..  ++++      .+...+     ...++..+++++.|+++||+|||++++.+.++..++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~   78 (394)
T TIGR00883         5 EWFDFYLYGFAAVLVFHTFFPPSGDPL------VALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIG   78 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHhcCCCCChH------HHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHH
Confidence            445555566666777766543  3333      333333     334445578999999999999999999999999999


Q ss_pred             HHHHHhHHHHH--------HHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCc
Q 017429          126 NTLFGLSVNFW--------MAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP  196 (371)
Q Consensus       126 ~~~~~~~~~~~--------~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~  196 (371)
                      .+++++++++.        .+++.|+++|++.+...+. ..++.|++|+++|++..+..+.+..+|..+++.++..+...
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~  158 (394)
T TIGR00883        79 TLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYL  158 (394)
T ss_pred             HHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999887764        5888999999998887775 99999999999999999999999999999999988776531


Q ss_pred             CCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhhhhhhhhcccCCcccc
Q 017429          197 AEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKK  276 (371)
Q Consensus       197 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (371)
                      .+       .... ..++|+.++++.++..++..+.....||++++..++++                   ++......+
T Consensus       159 ~~-------~~~~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~  211 (394)
T TIGR00883       159 LG-------DDAL-LEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEK-------------------HKKKRGPIR  211 (394)
T ss_pred             cC-------HHHh-hccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhc-------------------cccccCCHH
Confidence            11       0000 15577887777766665555555556665432111100                   001122334


Q ss_pred             ccccccc--hHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 017429          277 SLLKNWP--LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPI  354 (371)
Q Consensus       277 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~  354 (371)
                      +.+++++  ++......++..........+.|.|..+.     +|.++.+.+.......+...++. ++.+++.||+++|
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~-~~~g~l~dr~g~~  285 (394)
T TIGR00883       212 ETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQT-----LGLSANSALLVLMLSLILFFITI-PLSGALSDRIGRR  285 (394)
T ss_pred             HHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCChhHHHHHHHHHHHHHHHHH-HHHHHHHHHhchH
Confidence            4555554  55555555555555566667788887554     68889999999998889998888 5889999999999


Q ss_pred             HHHHHH
Q 017429          355 MVARIA  360 (371)
Q Consensus       355 ~~~~~~  360 (371)
                      +.+..+
T Consensus       286 ~~~~~~  291 (394)
T TIGR00883       286 PVLIIF  291 (394)
T ss_pred             HHHHHH
Confidence            876643

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.92  E-value=5.6e-23  Score=192.53  Aligned_cols=277  Identities=13%  Similarity=0.165  Sum_probs=202.4

Q ss_pred             hhHHHHHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhc-----CCchH
Q 017429           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-----GRKPV  114 (371)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----Grr~~  114 (371)
                      +++...++...+..+.......+.+|.+.++.|.+.++      ++.+ +.....+ ++.+++|+++||+     |||+.
T Consensus        11 ~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~------ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~   82 (491)
T PRK11010         11 QPNSAILLILGFASGLPLALTSGTLQAWMTVENIDLKT------IGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRG   82 (491)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH------HHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchH
Confidence            44566677777778888888889999999999999888      8876 3333333 6899999999999     99885


Q ss_pred             -HHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhh
Q 017429          115 -IIMGTASVVIFNTLFGLS---VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPAL  189 (371)
Q Consensus       115 -l~~~~~~~~~~~~~~~~~---~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i  189 (371)
                       ++.+.+..+++...+++.   ++++.+.+.+++.+++.+...+. .++..|++|+++|+++.++...+..+|.++++.+
T Consensus        83 ~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l  162 (491)
T PRK11010         83 WLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGL  162 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHH
Confidence             667777777777776664   47888888999999987777775 9999999999999999999999999999999999


Q ss_pred             hhhhcCcCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhhhhhhhhcc
Q 017429          190 GGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEG  269 (371)
Q Consensus       190 ~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (371)
                      ++.+.+.               .++|+..+++.++..++..+..++.||+++..+. ++  +..               +
T Consensus       163 ~~~l~~~---------------~~GWr~~f~i~a~l~ll~~l~~~~~~e~~~~~~~-~~--~~~---------------~  209 (491)
T PRK11010        163 ALWLADR---------------YLGWQGMYWLMAALLIPCIIATLLAPEPTDTIPV-PK--TLE---------------Q  209 (491)
T ss_pred             HHHHHhc---------------ccCHHHHHHHHHHHHHHHHHHHHhcCCCcccccc-cc--chh---------------h
Confidence            9998761               2467887788777776666666667876432110 00  000               0


Q ss_pred             cCCccccccccccchHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHH-HHHHHHHHHHHHHHHHHH
Q 017429          270 REATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLA-ITGFSLLVFQLSLYPFLE  348 (371)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~-~~~~~~~~~~~~~~~~l~  348 (371)
                      ....+.++.++++..+...+..++..........+.+.|+.+.     +|+++.+.+.+.. ...++.+++. ++++++.
T Consensus       210 ~~~~~l~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~~-----~G~s~~~~g~~~~~~g~i~~iiG~-ll~G~L~  283 (491)
T PRK11010        210 AVVAPLRDFFGRNNAWLILLLIVLYKLGDAFAMSLTTTFLIRG-----VGFDAGEVGLVNKTLGLLATIVGA-LYGGILM  283 (491)
T ss_pred             hHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence            0012344566677776666555555555555555666665443     7999999999875 4446777777 6899999


Q ss_pred             HHhchhHHHHHHHHh
Q 017429          349 RILGPIMVARIAGVN  363 (371)
Q Consensus       349 ~r~~~~~~~~~~~~~  363 (371)
                      ||+++|+.+..+.++
T Consensus       284 dr~g~~~~l~i~~~l  298 (491)
T PRK11010        284 QRLSLFRALMIFGIL  298 (491)
T ss_pred             HHHhHHHHHHHHHHH
Confidence            999998876655443

>TIGR00901 2A0125 AmpG-related permease

Probab=99.92  E-value=5.2e-23  Score=185.87  Aligned_cols=271  Identities=12%  Similarity=0.192  Sum_probs=193.5

Q ss_pred             ccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhc-----CCchHH-HHHHHHHHHHHHHH
Q 017429           56 PISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-----GRKPVI-IMGTASVVIFNTLF  129 (371)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----Grr~~l-~~~~~~~~~~~~~~  129 (371)
                      .....++..|.+.+++|+|.++      .|+.... .+...+ .+++|+++||+     ||||.+ +.+.++.++.....
T Consensus         3 ~~~~~~~~~~~~~~~~g~s~~~------~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l   74 (356)
T TIGR00901         3 PLGLVGNTLPYWLRSKNVSLKT------IGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLIL   74 (356)
T ss_pred             CchhHHhHHHHHHHHcCCCHHH------HHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHH
Confidence            4456778899999999999999      9988655 445444 99999999998     898874 56777777776666


Q ss_pred             HhH---HHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCCCCccc
Q 017429          130 GLS---VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFS  205 (371)
Q Consensus       130 ~~~---~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~~~~~g  205 (371)
                      ++.   .+.+.+....++.+++.+...+. .++++|++|+|+|+++.++...+..+|.++++.+++.+...       ++
T Consensus        75 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~-------~g  147 (356)
T TIGR00901        75 SFLVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASP-------EF  147 (356)
T ss_pred             HcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhh-------cc
Confidence            665   45666777777888777777775 99999999999999999999999999999999999988872       22


Q ss_pred             ccccccCccchhHHHHHHHHHHHHHHHHh-hccccccCCCCCCccchhhhhhhhhhhhhhhhhcccCCccccccccccc-
Q 017429          206 SESLFGKFPYFLPCLCISLFAFGVTIAAF-WLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWP-  283 (371)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  283 (371)
                      .... .+++|+.++++.++..++..+..+ ..||+.++... +  ++..        .       +.....+++++++. 
T Consensus       148 ~~~~-~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~~~~-~--~~~~--------~-------~~~~~~~~~~~~~~~  208 (356)
T TIGR00901       148 ANTG-LITLWGYIFFWTALLILPGLLVTLFLAKEPQEDASV-P--KPLT--------Q-------AVLKPIREFFQRKNM  208 (356)
T ss_pred             cccc-cccccHHHHHHHHHHHHHHHHHHHHhccCCCccccc-c--hhHH--------H-------HHHHHHHHHHHhcCc
Confidence            1111 255689888888877766655544 35664321110 0  0000        0       00113445666665 


Q ss_pred             --hHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHH-HHHHHHHHHHHHHHHHhchhHHHHHH
Q 017429          284 --LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGF-SLLVFQLSLYPFLERILGPIMVARIA  360 (371)
Q Consensus       284 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~-~~~~~~~~~~~~l~~r~~~~~~~~~~  360 (371)
                        ++...+..++..........+.+.|..+      +|+++.+.+.+....+. ..+++. ++++++.||+|+|+.+..+
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~g~~~~~~g~~~~~~~~~~~~~g~-~~~g~l~~r~g~~~~l~~~  281 (356)
T TIGR00901       209 IQALLLLLLIVLYKLGDSAATVLTTLFLLD------MGFSKEEIALVAKINGLLGAILGG-LIGGIIMQPLNILYALLLF  281 (356)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHhHHHHHHHHHHHH-HHHHHHHhhhhHHHHHHHH
Confidence              5555666565666666677788888754      68899999988887774 455655 6889999999999888777


Q ss_pred             HHhhhhc
Q 017429          361 GVNFEHS  367 (371)
Q Consensus       361 ~~~~~~~  367 (371)
                      +++..++
T Consensus       282 ~~~~~~~  288 (356)
T TIGR00901       282 GIVQALT  288 (356)
T ss_pred             HHHHHHH
Confidence            7665543

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.92  E-value=6.3e-23  Score=188.29  Aligned_cols=271  Identities=14%  Similarity=0.211  Sum_probs=198.6

Q ss_pred             HHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhc-----CCch-HHHHHHH
Q 017429           47 WIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-----GRKP-VIIMGTA  120 (371)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----Grr~-~l~~~~~  120 (371)
                      ....+.+++..+.....+|.+.++.|++.++      +|++..+...  .+..+++|+++||+     |||| .+.++.+
T Consensus         5 ~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~------ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~   76 (402)
T PRK11902          5 LLLGFASGLPLALTSGTLQAWMTVEGLDIQT------IGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQV   76 (402)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHH
Confidence            3456677888888899999999999999999      9998666664  58999999999999     8765 6888888


Q ss_pred             HHHHHHHHHHhH---HHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCc
Q 017429          121 SVVIFNTLFGLS---VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP  196 (371)
Q Consensus       121 ~~~~~~~~~~~~---~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~  196 (371)
                      +.+++....++.   .+++.+++..++.+++.+...+. .+++.|++|+++|+++.++...+..+|..+++.+++.+.+.
T Consensus        77 ~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~  156 (402)
T PRK11902         77 GLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADR  156 (402)
T ss_pred             HHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence            887777776665   45777777777788777777775 99999999999999999999999999999999999988761


Q ss_pred             CCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhhhhhhhhcccCCcccc
Q 017429          197 AEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKK  276 (371)
Q Consensus       197 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (371)
                                     .++|+.++++.++..++..+..++.||++++.++++   +..               ++....++
T Consensus       157 ---------------~~gw~~~f~i~a~~~l~~~l~~~~~~e~~~~~~~~~---~~~---------------~~~~~~~~  203 (402)
T PRK11902        157 ---------------VLGWGNTYLLMAGLMLAGALTTLWAPEPEVPARPPR---SLG---------------EAVVGPLR  203 (402)
T ss_pred             ---------------ccCHHHHHHHHHHHHHHHHHHHHhcCCCcccccccc---hhH---------------HHHHHHHH
Confidence                           136777778777766665555667777653321110   000               00112456


Q ss_pred             ccccccchHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHH-HHHHHHHHHHHHHHHHhchhH
Q 017429          277 SLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGF-SLLVFQLSLYPFLERILGPIM  355 (371)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~-~~~~~~~~~~~~l~~r~~~~~  355 (371)
                      +++++|.++..++..++..........+.+.+..+.     +|+++.+.+.+....+. +.+++. ++.+++.||+++|+
T Consensus       204 ~l~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~-----~G~~~~~~g~~~~~~~~~~~i~g~-~~~g~l~~r~g~~~  277 (402)
T PRK11902        204 DFFSRRGAWALLLLIVLYKLGDAFAGSLSTTFLIRG-----AGFSAGEVGIVNKTLGLAATIVGA-LAGGTLMVRLGLYR  277 (402)
T ss_pred             HHHhCcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHhHHH
Confidence            678899888777666665544333333444444333     78999999998876654 466666 58899999999988


Q ss_pred             HHHHHHHhh
Q 017429          356 VARIAGVNF  364 (371)
Q Consensus       356 ~~~~~~~~~  364 (371)
                      .+..+.++.
T Consensus       278 ~l~~~~~~~  286 (402)
T PRK11902        278 SLMLFGVLQ  286 (402)
T ss_pred             HHHHHHHHH
Confidence            776655443

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.90  E-value=1.3e-21  Score=179.04  Aligned_cols=266  Identities=15%  Similarity=0.206  Sum_probs=178.4

Q ss_pred             HHHHHHHHHhhcccccchhhHHH-HHHhhccccccccchhhhHHHHHHHHH-HHHHHhHHHHhhhhhcCCchHH-HHHHH
Q 017429           44 FSIWIIVLCTALPISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMF-GRALTSVFWGLVADRYGRKPVI-IMGTA  120 (371)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~Grr~~l-~~~~~  120 (371)
                      ...++..++..+......|.+|. +.+++|.+.++      .|++.+...+ +..++.+++|+ +||+||||.+ ..+.+
T Consensus        18 ~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~------~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~   90 (393)
T PRK15011         18 TAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAM------VGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCL   90 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHH
Confidence            34555577777777778888875 56889999999      9999876655 55555555555 9999999875 45566


Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchh--hhhHhhhhhhhhHHhHHHhhhhhhcCcC
Q 017429          121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQA--LGLSTVSTAWGIGLIIGPALGGFLAQPA  197 (371)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~--~~~~~~~~~~~~g~~~g~~i~~~l~~~~  197 (371)
                      ...++..+.+++++++.+++.+.+.|...+...+. ..+..|..++++|.  ...++.+.+.++|.++||.+++.+.+  
T Consensus        91 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~--  168 (393)
T PRK15011         91 LGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAM--  168 (393)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHH--
Confidence            66677777788889988776665555444455564 77888877766553  34477888899999999999999988  


Q ss_pred             CCCCCcccccccccCccchhHHHHHHHHHHHHH-HHHhhccccccCCCCCCccchhhhhhhhhhhhhhhhhcccCCcccc
Q 017429          198 EKYPNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKK  276 (371)
Q Consensus       198 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (371)
                                    .++|+..++..++..++.. +..+++||.+++++.+++  +                .    ... 
T Consensus       169 --------------~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----------------~----~~~-  211 (393)
T PRK15011        169 --------------GFSFTVMYLSAAVAFIVCGVMVWLFLPSMRKELPLATG--T----------------L----EAP-  211 (393)
T ss_pred             --------------hcChHHHHHHHHHHHHHHHHHHHhhcCccCCCCccccc--c----------------c----ccc-
Confidence                          5667777777776655543 345567876532211100  0                0    000 


Q ss_pred             ccccc-cchHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhchhH
Q 017429          277 SLLKN-WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIM  355 (371)
Q Consensus       277 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~  355 (371)
                        .++ +..+...............+..+.|.|..+.     +|+++.+.+.+.+...++.+++. ++.+++.||+++|+
T Consensus       212 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-----~~~~~~~~g~~~~~~~~~~i~~~-~~~G~l~dr~g~~~  283 (393)
T PRK15011        212 --RRNRRDTLLLFVICTLMWGTNSLYIINMPLFIINE-----LHLPEKLAGVMMGTAAGLEIPTM-LIAGYFAKRLGKRF  283 (393)
T ss_pred             --ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhChHH
Confidence              111 2223333333333334444556777777655     78899999988877777777767 58899999999998


Q ss_pred             HHHHHHHh
Q 017429          356 VARIAGVN  363 (371)
Q Consensus       356 ~~~~~~~~  363 (371)
                      .+..+...
T Consensus       284 ~~~~~~~~  291 (393)
T PRK15011        284 LMRVAAVA  291 (393)
T ss_pred             HHHHHHHH
Confidence            87765544

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=3.9e-24  Score=183.52  Aligned_cols=240  Identities=18%  Similarity=0.193  Sum_probs=192.5

Q ss_pred             hHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhccchhHH-HHHHhhh
Q 017429           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEI  162 (371)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~  162 (371)
                      +|++.+...+.+.+.+++.|.+.||+|+|..+++|.+++....+++++.++++.++++|.++|+|.++..++ .++++|.
T Consensus       108 iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsglamlAd~  187 (464)
T KOG3764|consen  108 IGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLAMLADV  187 (464)
T ss_pred             hhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHHHHHHH
Confidence            899999999999999999999999999999999999999999999999999999999999999999998887 9999999


Q ss_pred             ccccc-hhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhhcccccc
Q 017429          163 FREEH-QALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLH  241 (371)
Q Consensus       163 ~~~~~-r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  241 (371)
                      +|+++ |++++|+...+.++|..+||.+||++.+                ..|++.||++.+++.++-..+.+++-|..+
T Consensus       188 f~~d~er~~vmGialgfislG~lvgPpfGGilYe----------------~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~  251 (464)
T KOG3764|consen  188 FPEDNERGSVMGIALGFISLGVLVGPPFGGILYE----------------FAGKSAPFLVLAIVLLLDGALQLLVIEPTE  251 (464)
T ss_pred             cccchhhhHHHHHHHHHHhccceecCCcccchHh----------------hcCCcCcHHHHHHHHHHHHHHHHheeCccc
Confidence            99765 7999999999999999999999999999                677889999998888876666555544322


Q ss_pred             CCCCCCccchhhhhhhhhhhhhhhhhcccCCccccccccccchHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCcccc
Q 017429          242 RHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYS  321 (371)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  321 (371)
                      ...++.                      .+..+.++++++|.++..............-....++.|..+.     +.-+
T Consensus       252 ~~~~~~----------------------~~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~-----m~~p  304 (464)
T KOG3764|consen  252 MDPDST----------------------EQGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLET-----MFTP  304 (464)
T ss_pred             cCcccc----------------------ccCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHh-----ccCC
Confidence            211111                      1124577889999988776665555555444555566666555     5534


Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHHHhc--hhHHHHHHHHhhhhc
Q 017429          322 TQMVGEVLAITGFSLLVFQLSLYPFLERILG--PIMVARIAGVNFEHS  367 (371)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~--~~~~~~~~~~~~~~~  367 (371)
                      .-+.|..+....+...++. .+.+.+.||++  |......|++...++
T Consensus       305 ~w~~G~~fLp~~~~y~ig~-~lfg~la~k~~~~~wl~~~~gl~~~G~~  351 (464)
T KOG3764|consen  305 GWEVGLAFLPASLSYAIGT-NLFGKLADKYPHLRWLLSLGGLATVGVS  351 (464)
T ss_pred             CcceeeeecccccchhccC-chHHHHHHhcCchhHHHHHHHHHHHHHH
Confidence            4489999999999999988 58899999999  544444555544433

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.90  E-value=7.5e-22  Score=180.87  Aligned_cols=284  Identities=14%  Similarity=0.140  Sum_probs=190.8

Q ss_pred             HHHHHHHHHHHhhcccccchhhHHHH-HHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHH
Q 017429           42 ELFSIWIIVLCTALPISSLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (371)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~  120 (371)
                      .++......++.........|.+|.+ .+++|.+..+      .+++.+++.++..+++++.|+++||+|||+.++.+.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~   76 (396)
T TIGR00882         3 NFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTD------TGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIIS   76 (396)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence            45556666777777778888888865 4568999999      9999999999999999999999999999999988776


Q ss_pred             HHHHHHHHHH---hH-----HHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhh
Q 017429          121 SVVIFNTLFG---LS-----VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGG  191 (371)
Q Consensus       121 ~~~~~~~~~~---~~-----~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~  191 (371)
                      ..++......   +.     +....+++.+++.|++.+...+. ..+..|..+  +++..++......++|..+||.+++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g  154 (396)
T TIGR00882        77 GLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAG  154 (396)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHh
Confidence            6655443221   11     12334566788888877766664 666666433  3445667777888999999999999


Q ss_pred             hhcCcCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhhc-cccccCCCCCCccchhhhhhhhhhhhhhhhhccc
Q 017429          192 FLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL-PETLHRHNDDDDSCDVSYDALESASAEVKEEEGR  270 (371)
Q Consensus       192 ~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (371)
                      .+.+                 ++|+.++++.+++.++..+..+.. ||+++++. +++   ..    +      .+++.+
T Consensus       155 ~l~~-----------------~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~----~------~~~~~~  203 (396)
T TIGR00882       155 ILFS-----------------IDPQIVFWLGSGFALILMLLLMFAKPKAPSSAT-VAN---AL----G------ANASAF  203 (396)
T ss_pred             hhhc-----------------cCchHHHHHHHHHHHHHHHHHHHhCCCCchhhh-hhc---cc----c------cccCCC
Confidence            8764                 356677777776666655444443 33322110 000   00    0      000111


Q ss_pred             CCccccccccccchHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 017429          271 EATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI  350 (371)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r  350 (371)
                      ..++.++++|+|+++...+..+...........+.+.|......  +.+.+....|...+...+...++. ...+++.||
T Consensus       204 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~--~~~~~~~~~g~~~~~~~i~~~~~~-~~~g~l~~r  280 (396)
T TIGR00882       204 SLKLALELFRQRKFWMFVLYVVGVACVYDVFDQQFANFFTSFFA--TPQQGTRVFGYVTTMGELLNALIM-FCAPLIINR  280 (396)
T ss_pred             CHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccccchHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            12345678889988776665555444444455566777655421  124556678888888888888877 477899999


Q ss_pred             hchhHHHHHHHHhhhhc
Q 017429          351 LGPIMVARIAGVNFEHS  367 (371)
Q Consensus       351 ~~~~~~~~~~~~~~~~~  367 (371)
                      .++|+.+..+.++..++
T Consensus       281 ~g~~~~l~~~~~l~~l~  297 (396)
T TIGR00882       281 IGAKNALLIAGTIMSVR  297 (396)
T ss_pred             hccchhHHHHHHHHHHH
Confidence            99999988877765553

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.90  E-value=1.1e-21  Score=169.76  Aligned_cols=291  Identities=16%  Similarity=0.159  Sum_probs=228.9

Q ss_pred             ChhHHHHHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHH
Q 017429           39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (371)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~  118 (371)
                      .+..+..+....++.++......+.+|.+.+.++++..+      .+++..+++.++.+.+++.|++.+|+|+|+-++.|
T Consensus        11 ~~~~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~------a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lg   84 (422)
T COG0738          11 VKLAFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFE------ASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLG   84 (422)
T ss_pred             ceeHHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHH------HHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHH
Confidence            334555666777788888888899999999999999999      99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH---hHHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhc
Q 017429          119 TASVVIFNTLFG---LSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (371)
Q Consensus       119 ~~~~~~~~~~~~---~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~  194 (371)
                      ..++++++.++.   ...++..++++-++.|.|.+...+. +.+++.+.+++...+.+++.+..+.+|..++|++++.+.
T Consensus        85 L~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~li  164 (422)
T COG0738          85 LLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLI  164 (422)
T ss_pred             HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            999999998874   5678899999999999999998886 999999999988899999999999999999999999998


Q ss_pred             CcC----CCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhhc--cccccCCCCCCccchhhhhhhhhhhhhhhhhc
Q 017429          195 QPA----EKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL--PETLHRHNDDDDSCDVSYDALESASAEVKEEE  268 (371)
Q Consensus       195 ~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (371)
                      ...    -+......|+... --.++.++...+...++..+.....  |+.+....++.                     
T Consensus       165 ls~~~~~~~~~~~~~~~~~~-~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~~~~---------------------  222 (422)
T COG0738         165 LSGVALTMSAAQILAIKGAD-ASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAAPSLG---------------------  222 (422)
T ss_pred             HhhhhhccCHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHhccCCcCCccccccc---------------------
Confidence            620    0000011111111 1235666666655554444433332  22221111110                     


Q ss_pred             ccCCccccccccccchHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 017429          269 GREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLE  348 (371)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~  348 (371)
                      ++......+++++|+++...+..+++...+.....+++.|+.+.     .|.+..+++...+.+..+.++++ +++.++.
T Consensus       223 ~~~~~~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~-----~g~~~~~aa~~~s~~~~~~~vGR-Fig~~lm  296 (422)
T COG0738         223 ASGSAGLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEEL-----LGLNEQQAAYYLSFFWVGFMVGR-FIGSALM  296 (422)
T ss_pred             ccccchHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhc-----CCccHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence            01111567889999999999999999999999999999999887     78899999999999999999999 5778888


Q ss_pred             HHhchhHHHHHHHHh
Q 017429          349 RILGPIMVARIAGVN  363 (371)
Q Consensus       349 ~r~~~~~~~~~~~~~  363 (371)
                      +|+...|.+.+..+.
T Consensus       297 ~~~~~~k~Laf~a~~  311 (422)
T COG0738         297 SRIKPEKYLAFYALI  311 (422)
T ss_pred             HHhCHHHHHHHHHHH
Confidence            899999888766543

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.90  E-value=2e-22  Score=208.48  Aligned_cols=299  Identities=17%  Similarity=0.122  Sum_probs=202.6

Q ss_pred             hHHHHHHHHHHHhhcccc-cchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHH
Q 017429           41 TELFSIWIIVLCTALPIS-SLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (371)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~  119 (371)
                      +.+...++..++..+... ......+.+..+++.+...    ...+++.+++.++..++++++|+++||+|||++++++.
T Consensus         9 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~   84 (1146)
T PRK08633          9 IGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQV----ILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVK   84 (1146)
T ss_pred             hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHH----HHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHH
Confidence            344444444544444332 3334445566666554332    22688899999999999999999999999999999988


Q ss_pred             HHHHHHHHHHH---hHHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcC
Q 017429          120 ASVVIFNTLFG---LSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (371)
Q Consensus       120 ~~~~~~~~~~~---~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~  195 (371)
                      ++.+++.++..   ..++++.+++.|++.|++.+...+. .++++|++|+++|++++++.+.+..+|.++||.+++++.+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~  164 (1146)
T PRK08633         85 LFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFE  164 (1146)
T ss_pred             HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            77665554443   3568999999999999999988886 9999999999999999999999999999999999999986


Q ss_pred             cCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhhhhhhhhcccCCccc
Q 017429          196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPK  275 (371)
Q Consensus       196 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (371)
                      .... .+..+    + .+.++..++......++.++..+.+||.+.....+.+.....  .           .......+
T Consensus       165 ~~~~-~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----------~~~~~~~~  225 (1146)
T PRK08633        165 SVNG-NTPSE----I-LGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVFDKKKYL--F-----------PKLLWRNL  225 (1146)
T ss_pred             hhcc-ccccc----c-ccchHHHHHHHHHHHHHHHHHHhcCcCCCCCCcccccccccc--c-----------HHHHHHHH
Confidence            2000 00000    0 111222223333333344455566777654432211000000  0           00011234


Q ss_pred             cccccccchHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccch-hhhHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 017429          276 KSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQ-MVGEVLAITGFSLLVFQLSLYPFLERILGPI  354 (371)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~  354 (371)
                      +.+++++.++..++..++..........++|.|....     +|++.. ..+++.+..+++.++++ ++.+++.||.+++
T Consensus       226 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~s~~~~~g~~~~~~~ig~~~g~-~~~g~l~~r~~~~  299 (1146)
T PRK08633        226 KLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEV-----LGLDNTFQVQYLLAASAIGIGIGS-LLAGRLSGRHIEL  299 (1146)
T ss_pred             HHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-----hCCCcHHHHHHHHHHHHHHHHHHH-HHHHHHhCCceEc
Confidence            5677888888777776666666666677778777665     788888 89999999999999988 5889999999988


Q ss_pred             HHHHHHHHhhhhcc
Q 017429          355 MVARIAGVNFEHSV  368 (371)
Q Consensus       355 ~~~~~~~~~~~~~~  368 (371)
                      +.+.++.+++++++
T Consensus       300 ~~~~~~~~~~~~~~  313 (1146)
T PRK08633        300 GLVPLGALGLALSL  313 (1146)
T ss_pred             cchhHHHHHHHHHH
Confidence            77766666554443

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.89  E-value=1.6e-21  Score=181.67  Aligned_cols=286  Identities=22%  Similarity=0.260  Sum_probs=218.4

Q ss_pred             CChhHHHHHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHH
Q 017429           38 LPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM  117 (371)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~  117 (371)
                      .+.+.+..+|...++..++..+.....+-+..+..-|...      .+++..+..+..++.++++|.++||++||++++.
T Consensus         7 lr~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~------valv~~a~~LP~~Llsl~aG~laDr~drrrili~   80 (524)
T PF05977_consen    7 LRNRNFRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLM------VALVQAASTLPILLLSLFAGALADRFDRRRILIL   80 (524)
T ss_pred             ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHH
Confidence            3445666788888888888888888888777777777777      9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHh-----HHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhh
Q 017429          118 GTASVVIFNTLFGL-----SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGG  191 (371)
Q Consensus       118 ~~~~~~~~~~~~~~-----~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~  191 (371)
                      +.++.++..+..++     ..+++.+++.-++.|++.+...|+ ++++.|+.|+++...+.++.+...+++..+||.++|
T Consensus        81 ~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG  160 (524)
T PF05977_consen   81 SQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGG  160 (524)
T ss_pred             HHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHH
Confidence            98877665544433     247788999999999999999998 999999999999999999999999999999999999


Q ss_pred             hhcCcCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhhhhhhhhcccC
Q 017429          192 FLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGRE  271 (371)
Q Consensus       192 ~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (371)
                      .+..                .++....+.+.++..++.+......+.........+   +..              ..+.
T Consensus       161 ~Lva----------------~~G~~~~f~inalsfl~~i~~l~~~~~~~~~~~~~~---e~~--------------~~~l  207 (524)
T PF05977_consen  161 ILVA----------------FFGAAAAFLINALSFLISILALLRWKPPPPPSSLPR---ERF--------------FSAL  207 (524)
T ss_pred             HHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHccccccccccch---hhh--------------hhhH
Confidence            9987                444555566666665555555454443221111110   000              0111


Q ss_pred             CccccccccccchHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017429          272 ATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL  351 (371)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~  351 (371)
                      ...++.+.++|.+...++..+++......+...+|.+..+.     +|.++...|++.+..+++.+++++ +.+++.+|.
T Consensus       208 ~~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~-----l~~~a~~yGll~a~~gvGai~Gal-~~~~l~~~~  281 (524)
T PF05977_consen  208 REGLRYVRSSPPLRSVLLRSFLFNLFASAVWALLPLFARDV-----LGGGASGYGLLLAAFGVGAILGAL-LLPRLRRRL  281 (524)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHH-----hCCcHHHHHHHHHHHHHHHHHHHH-HHHHhhccc
Confidence            22445566677776666666666666666677788887666     788999999999999999999995 778899999


Q ss_pred             chhHHHHHHHHhhhhcc
Q 017429          352 GPIMVARIAGVNFEHSV  368 (371)
Q Consensus       352 ~~~~~~~~~~~~~~~~~  368 (371)
                      ++++++..+.+++++++
T Consensus       282 ~~~~lv~~~~~~~a~~~  298 (524)
T PF05977_consen  282 SSRRLVLLASLLFALAL  298 (524)
T ss_pred             CcchhhHHHHHHHHHHH
Confidence            98888877777666554

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.89  E-value=1e-21  Score=202.66  Aligned_cols=239  Identities=16%  Similarity=0.144  Sum_probs=180.2

Q ss_pred             hHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHH---HHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhccchhHH-HHHH
Q 017429           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM---GTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYA  159 (371)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~  159 (371)
                      .++..+++.++++++++++|+++||+|||+++..   ..+...+..+.....++++.++++|+++|++.+...|+ .+++
T Consensus        54 ~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l  133 (1140)
T PRK06814         54 VTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSIL  133 (1140)
T ss_pred             HHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhh
Confidence            7888889999999999999999999999997643   22222222233334589999999999999999988886 9999


Q ss_pred             hhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhhcccc
Q 017429          160 CEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPET  239 (371)
Q Consensus       160 ~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  239 (371)
                      .|++|+++|++++++.+++.++|.++||.++|++..                ..+|+..++...+..++.++..+++|++
T Consensus       134 ~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (1140)
T PRK06814        134 PDHLNKDELLGANALVEAGTFIAILLGTIIGGLATI----------------SGNFVILVALLMGIAVLGWLASLFIPKT  197 (1140)
T ss_pred             HhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHh----------------ccccHHHHHHHHHHHHHHHHHHhhCCCC
Confidence            999999999999999999999999999999999987                5556666655555555555666677766


Q ss_pred             ccCCCCCCccchhhhhhhhhhhhhhhhhcccCCccccccccccchHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCcc
Q 017429          240 LHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLN  319 (371)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (371)
                      +............. +              .....++.+.+++.++...+..++..+.......++|.|..+.     +|
T Consensus       198 ~~~~~~~~~~~~~~-~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-----~g  257 (1140)
T PRK06814        198 GNAAPDLKIDRNII-R--------------STITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKET-----LG  257 (1140)
T ss_pred             CCCCCCCeeccchH-H--------------HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----cC
Confidence            43222111100000 0              0012456677889999888888877777777778889988776     78


Q ss_pred             ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHH
Q 017429          320 YSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARI  359 (371)
Q Consensus       320 ~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~  359 (371)
                      .++.+.|.+++..+++.++++. +.+++.++..+++.+..
T Consensus       258 ~~~~~~g~~~~~~~~g~~ig~~-~~g~l~~~~~~~~~~~~  296 (1140)
T PRK06814        258 GDENVATLFLAVFSVGVAVGSF-LASKLSEGRITLLYVPI  296 (1140)
T ss_pred             CchHHHHHHHHHHHHHHHHHHH-HHHHHhCCceeeeeehH
Confidence            9999999999999999999995 77888876665554433

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.88  E-value=3.6e-21  Score=177.78  Aligned_cols=286  Identities=13%  Similarity=0.093  Sum_probs=176.9

Q ss_pred             hHHHHHHHHHHHhhcccccchhhHHHHH-HhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHH
Q 017429           41 TELFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (371)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~  119 (371)
                      +.++...+..++.....+...+++|.+. +++|++..+      .|++.+++.++..+++++.|+++||+|||++++++.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~------~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~   83 (420)
T PRK09528         10 PNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTD------TGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWII   83 (420)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHH
Confidence            3455555666666666677788888555 459999999      999999999999999999999999999999998876


Q ss_pred             HHHHHHHHHHH---hHHH-----HHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhh
Q 017429          120 ASVVIFNTLFG---LSVN-----FWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG  190 (371)
Q Consensus       120 ~~~~~~~~~~~---~~~~-----~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~  190 (371)
                      .+.+++.....   ..+.     ....++.++..|.+.....+. ..+..+ . .+++++.++......++|..++|.++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~  161 (420)
T PRK09528         84 SGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIA  161 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHH
Confidence            66554433211   1111     111122233333322222222 233222 2 34567788888888899999999999


Q ss_pred             hhhcCcCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhhhhhhhhccc
Q 017429          191 GFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGR  270 (371)
Q Consensus       191 ~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (371)
                      +.+.+                 .+|+.+++..++..++..+..++.+++++++....++++.             +++..
T Consensus       162 g~l~~-----------------~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~  211 (420)
T PRK09528        162 GILFN-----------------INPQINFWLGSGSALILLVLLFFAKPDAPSTAKVANALGA-------------NASAV  211 (420)
T ss_pred             HHHHh-----------------cCchHhHHHHHHHHHHHHHHHhcccccccchhhhccchhc-------------ccccc
Confidence            98875                 2455666776666655555554444332221110000000             00001


Q ss_pred             CCccccccccccchHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 017429          271 EATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI  350 (371)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r  350 (371)
                      ..+..++.+|+|.++...+..+.............|.|..+..  .+.+.+..+.|.+.+...+...++. +..+++.||
T Consensus       212 ~~~~~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~-~~~g~l~dr  288 (420)
T PRK09528        212 SLKDALALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFF--ATPEQGTRVFGYLNSFQVFLEALIM-FFAPFIINR  288 (420)
T ss_pred             cHHHHHHHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHH--hccCcchHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            1123345677887766555444444433444445666654331  1135667788999998888888887 588999999


Q ss_pred             hchhHHHHHHHHhhhhc
Q 017429          351 LGPIMVARIAGVNFEHS  367 (371)
Q Consensus       351 ~~~~~~~~~~~~~~~~~  367 (371)
                      +++|+.+..+.++..++
T Consensus       289 ~g~~~~~~~~~~l~~~~  305 (420)
T PRK09528        289 IGAKNALLLAGTIMAVR  305 (420)
T ss_pred             hCcchhhHHHHHHHHHH
Confidence            99999887777665543

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.88  E-value=1.1e-20  Score=176.47  Aligned_cols=176  Identities=17%  Similarity=0.148  Sum_probs=142.2

Q ss_pred             hhHHHHHHHHHHHhhcccccchhhHH-HHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhh-cCCchHHHH
Q 017429           40 ITELFSIWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR-YGRKPVIIM  117 (371)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~Grr~~l~~  117 (371)
                      .+.++.++...+...+.++...+.++ ++.+++|.+.++      .+++.+.+.....+..+++|+++|| +||||++++
T Consensus        13 p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~------a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~   86 (489)
T PRK10207         13 PRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQ------AFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVL   86 (489)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHH
Confidence            35666677777778888777777665 556789999988      8999999998888888999999999 999999999


Q ss_pred             HHHHHHHHHHHHHhHHHHHH-HHHHHHHHhhhccchhHH-HHHHhhhcccc--chhhhhHhhhhhhhhHHhHHHhhhhhh
Q 017429          118 GTASVVIFNTLFGLSVNFWM-AVLTRFLLGSLNGLLGPI-KAYACEIFREE--HQALGLSTVSTAWGIGLIIGPALGGFL  193 (371)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~-~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~g~~i~~~l  193 (371)
                      +.+++.++.++++++.+... ++++|+++|++.|...+. .+++.|.+|++  +|++++++++.+.++|..+||.+++++
T Consensus        87 g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l  166 (489)
T PRK10207         87 GAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVI  166 (489)
T ss_pred             HHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998766444 558899999999988775 99999999877  457789999999999999999999999


Q ss_pred             cCcCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhhcc
Q 017429          194 AQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLP  237 (371)
Q Consensus       194 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (371)
                      .+                .++|++.|++..+..++.++.+...+
T Consensus       167 ~~----------------~~gw~~~F~i~~i~~~~~~~~~~~~~  194 (489)
T PRK10207        167 AD----------------KFGYSVTYNLCGAGLIIALLVYFACR  194 (489)
T ss_pred             HH----------------hhChHHHHHHHHHHHHHHHHHHHHcc
Confidence            98                44566666665443333344444444

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.88  E-value=3.9e-20  Score=171.97  Aligned_cols=285  Identities=13%  Similarity=0.140  Sum_probs=188.1

Q ss_pred             hhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHHhH
Q 017429           53 TALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS  132 (371)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~  132 (371)
                      ..+........++.+.+|+|-++.       ..|+.++..++..++.++.|+++|.+|||++++.+.++..++.++++.+
T Consensus        56 ~~~~~~~~a~~l~~I~~diG~~~~-------~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA  128 (599)
T PF06609_consen   56 AYFVLVLPASILPYINADIGGSDN-------WSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATA  128 (599)
T ss_pred             HHHHHhccHHHHHHHHHhcCCCcc-------chHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcC
Confidence            344455556777889999987654       6899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhccchhHHHHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCCCCcccccccccC
Q 017429          133 VNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGK  212 (371)
Q Consensus       133 ~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~~~~~g~~~~~~~  212 (371)
                      +|...++++..+.|++.|........++|..|.|.|+...++......+....+|.++..+..                .
T Consensus       129 ~~~~~~iag~~l~GvgaG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~----------------~  192 (599)
T PF06609_consen  129 QNMNTFIAGMVLYGVGAGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAA----------------H  192 (599)
T ss_pred             CcHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhcc----------------C
Confidence            999999999999999988777777779999999999888777766655555667777766655                2


Q ss_pred             ccchhHHHHHHHHHHHHHHH--HhhccccccCCCCCCccchhhhhhhhh-------------------------hhhhh-
Q 017429          213 FPYFLPCLCISLFAFGVTIA--AFWLPETLHRHNDDDDSCDVSYDALES-------------------------ASAEV-  264 (371)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~-  264 (371)
                      .+||+.+++.++...+.++.  .+..|.+.+..+.++....+...++|-                         ..... 
T Consensus       193 ~~WRw~~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~  272 (599)
T PF06609_consen  193 SGWRWIFYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAH  272 (599)
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcc
Confidence            33444445555544443332  233333222111111111111112211                         00000 


Q ss_pred             -----------------hhhc--ccCCccccccccccc-hHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccc--
Q 017429          265 -----------------KEEE--GREATPKKSLLKNWP-LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYST--  322 (371)
Q Consensus       265 -----------------~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--  322 (371)
                                       .|..  .+.+..+.+++++++ +...++..++.....++...++|......     ++-++  
T Consensus       273 VIa~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~v-----f~~d~~~  347 (599)
T PF06609_consen  273 VIAPLVIGFVLLVAFVVWEWFGAPKDPLFPHRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNV-----FGSDPIS  347 (599)
T ss_pred             chhhHHHHHHHHHHHHHhhhhccCCCCcCCHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----ccCCCcc
Confidence                             0211  234556677888754 44445666666666677777777766555     33333  


Q ss_pred             -hhhhHHHHHHHHHHHHHHHHHHHHHHHHhchhH-HHHHHHHhhhh
Q 017429          323 -QMVGEVLAITGFSLLVFQLSLYPFLERILGPIM-VARIAGVNFEH  366 (371)
Q Consensus       323 -~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~-~~~~~~~~~~~  366 (371)
                       ...+......+++..++.. +.+.+.++.++.| .++++.+++.+
T Consensus       348 ~~~~~~~s~~~~fg~~~g~~-i~g~l~~~ir~~Kw~li~~~~~~ta  392 (599)
T PF06609_consen  348 ITEIGWISSPVGFGSCAGAV-ILGLLFSKIRHIKWQLIFGSVLMTA  392 (599)
T ss_pred             cceeehhhhhHHHHHHHHHH-HHHHHHHHccchhHHHHHHHHHHHH
Confidence             3567777777777777774 5566666665544 44456555443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.87  E-value=3.3e-20  Score=173.05  Aligned_cols=175  Identities=14%  Similarity=0.188  Sum_probs=147.4

Q ss_pred             hHHHHHHHHHHHhhcccccchhhHHHHHH-h--hccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhh-cCCchHHH
Q 017429           41 TELFSIWIIVLCTALPISSLFPFLYFMIK-D--FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR-YGRKPVII  116 (371)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~Grr~~l~  116 (371)
                      +.++.++...++..++.+...+.+|.+.+ +  +|.+..+      .+++.+.+.++..++++++|+++|| +|||++++
T Consensus        10 ~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~------ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~   83 (475)
T TIGR00924        10 KPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQ------AFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMV   83 (475)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHH------HHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHH
Confidence            44566677778888888888888887754 4  8999988      9999999999999999999999999 89999999


Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccc---hhhhhHhhhhhhhhHHhHHHhhhhh
Q 017429          117 MGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEH---QALGLSTVSTAWGIGLIIGPALGGF  192 (371)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~---r~~~~~~~~~~~~~g~~~g~~i~~~  192 (371)
                      ++.++.+++.++.+++++++.+++.|++.|++.|...+. .++++|++|+++   |++++++++.+.++|..+||.+++.
T Consensus        84 ~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~  163 (475)
T TIGR00924        84 LGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGV  163 (475)
T ss_pred             HHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHH
Confidence            999999999999998888888999999999999887775 899999998754   8889999999999999999999999


Q ss_pred             hcCcCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhhcc
Q 017429          193 LAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLP  237 (371)
Q Consensus       193 l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (371)
                      +.+                .++|+..+...++..++.++..+..+
T Consensus       164 l~~----------------~~g~~~~f~~~~~~~~~~~l~~~~~~  192 (475)
T TIGR00924       164 IAE----------------NYGYHVGFNLAAVGMVIGLLTFFAGR  192 (475)
T ss_pred             HHH----------------hcChHHHHHHHHHHHHHHHHHHHHcc
Confidence            987                55667666766655444444444444

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00889 2A0110 nucleoside transporter

Probab=99.87  E-value=3.8e-20  Score=170.25  Aligned_cols=276  Identities=12%  Similarity=0.043  Sum_probs=184.6

Q ss_pred             HHHHHHHHhhcccccchhhHH-HHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCC-chHHHHHHHHH
Q 017429           45 SIWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGR-KPVIIMGTASV  122 (371)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Gr-r~~l~~~~~~~  122 (371)
                      .+....++.....+...|.++ .+.+++|++..+      +|++.+++.++..++++++|+++||+|| |+++.++.++.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~------iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~   79 (418)
T TIGR00889         6 KLKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAE------IGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAG   79 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            345556666666677766665 566779999999      9999999999999999999999999965 77888888888


Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHhhhccchhHH-HHHH----h----hhccccchhhhhHhhhhhhhhHHhHHHhhhhhh
Q 017429          123 VIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYA----C----EIFREEHQALGLSTVSTAWGIGLIIGPALGGFL  193 (371)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~----~----~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l  193 (371)
                      .+......+.++++.+++.|++.|++.+...+. .++.    .    |......|.+..|      .+|.++||.+++.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l  153 (418)
T TIGR00889        80 ALLLFFAAQVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLL  153 (418)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHh
Confidence            888888888889999999999999876655543 3332    2    2223233444444      46888888888877


Q ss_pred             cCcCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhhhhhhhhcccCCc
Q 017429          194 AQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREAT  273 (371)
Q Consensus       194 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (371)
                      ..                ...| .++++.++..++..+..+++||+++.+++++.  +..               +..+.
T Consensus       154 ~~----------------~~~~-~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~--~~~---------------~~~~~  199 (418)
T TIGR00889       154 DI----------------ELSN-IQLYITAGSSALLGVFALTLPDIPVAKSTAKM--SIK---------------VMLGL  199 (418)
T ss_pred             cc----------------cchh-HHHHHHHHHHHHHHHHHhcCCCCCCCcccccc--CHH---------------HHhhh
Confidence            43                2222 23455555555555556677876532211100  000               00011


Q ss_pred             cccccccccchHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccC--CccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017429          274 PKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLG--GLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL  351 (371)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~  351 (371)
                      ..++.+|+|.++...+..++..........+.+.|..+.....  .-+++....+...+...+..+++. +..+++.||+
T Consensus       200 ~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~-~~~g~l~dr~  278 (418)
T TIGR00889       200 DAFILFKNKRMAIFFFFSMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFI-LTIPFFLKRF  278 (418)
T ss_pred             hHHHHhcCCCeeeHHHHHHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHh
Confidence            2345678888777766666655544445555666654420000  012345677999999999999988 5788999999


Q ss_pred             chhHHHHHHHHhhhhc
Q 017429          352 GPIMVARIAGVNFEHS  367 (371)
Q Consensus       352 ~~~~~~~~~~~~~~~~  367 (371)
                      |+|+++..+.++..++
T Consensus       279 g~r~~l~~~~~~~~v~  294 (418)
T TIGR00889       279 GIKKVMLLSLVAWALR  294 (418)
T ss_pred             CcHHHHHHHHHHHHHH
Confidence            9999998888776665

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.86  E-value=7.8e-20  Score=169.61  Aligned_cols=291  Identities=18%  Similarity=0.171  Sum_probs=210.2

Q ss_pred             CCChhHHHHHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHH
Q 017429           37 GLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII  116 (371)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~  116 (371)
                      ...|-..+..++..+........+..+.+.+.++++.+.++      ++|+.++......+.+|+.+.+.||+|.|.+.+
T Consensus        42 G~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~------~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i  115 (509)
T KOG2504|consen   42 GWGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQ------IAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMI  115 (509)
T ss_pred             CeeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccH------HHHHHHHHHHHHHHhccHHHHHHhhcCchHHHH
Confidence            33444444444444444444455567788999999999999      999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHH-HHHhhhccchhH-HHHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhc
Q 017429          117 MGTASVVIFNTLFGLSVNFWMAVLTR-FLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (371)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~r-~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~  194 (371)
                      +|.++..++.++..++++.|++++.. ++.|+|.|+... ....+..+| +++|+.+.|+...+.++|.++-|.+...+.
T Consensus       116 ~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~  194 (509)
T KOG2504|consen  116 AGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLL  194 (509)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHH
Confidence            99999999999999999999888776 778999888655 566776555 567999999999999999999999999999


Q ss_pred             CcCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhhccc-cccCCCC----------------------CCccch
Q 017429          195 QPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPE-TLHRHND----------------------DDDSCD  251 (371)
Q Consensus       195 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e-~~~~~~~----------------------~~~~~~  251 (371)
                      +                .++||...++.+.+.+-.++....+++ +++....                      ...+..
T Consensus       195 ~----------------~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (509)
T KOG2504|consen  195 S----------------KYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELRISERDS  258 (509)
T ss_pred             H----------------HhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhccccccccccccccccccccCCC
Confidence            8                677777777777666555544443333 2221110                      000000


Q ss_pred             hhhh----hhhhhhhhhhhhc-ccCCcc----ccccccccchHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccc
Q 017429          252 VSYD----ALESASAEVKEEE-GREATP----KKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYST  322 (371)
Q Consensus       252 ~~~~----~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  322 (371)
                      ...+    ..+...+..++.. ...+..    ..++++++.++...+...+..........+++.|..+      .+++.
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~------~g~~~  332 (509)
T KOG2504|consen  259 GLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKS------LGLSS  332 (509)
T ss_pred             CCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh------cCCCh
Confidence            0000    0000000000001 011111    2578899999988888888888877777788888774      79999


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHhchhHHH
Q 017429          323 QMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVA  357 (371)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~  357 (371)
                      .+++.++++.++..++++ ++.+++.|+...++..
T Consensus       333 ~~aa~l~Siigi~~i~gR-i~~G~laD~~~~~~~~  366 (509)
T KOG2504|consen  333 NDAAFLLSIIGVSDIIGR-IILGLLADKPGIRALV  366 (509)
T ss_pred             hhhHHHHHHHHHhhhhhh-hhhhhhcCccccchHH
Confidence            999999999999999999 5889999998844433

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.86  E-value=1.7e-19  Score=165.03  Aligned_cols=273  Identities=12%  Similarity=0.046  Sum_probs=191.7

Q ss_pred             HHHHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHH--HHHHHHHHHHHhHHHHh-hhhhcCCchHHHHHH
Q 017429           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYV--GSSFMFGRALTSVFWGL-VADRYGRKPVIIMGT  119 (371)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~-l~dr~Grr~~l~~~~  119 (371)
                      +..+....+.+++..+...|.+|.+.++.|.+.++      +|+.  .+...+...+.+|+.+. ..||+||||..++.+
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~------iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~   76 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTA------LAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPM   76 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHH
Confidence            44566778889999999999999999999999999      9997  46668888888888855 799999998876655


Q ss_pred             HHH-HHHHHHHH---hHHH-HHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhh
Q 017429          120 ASV-VIFNTLFG---LSVN-FWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL  193 (371)
Q Consensus       120 ~~~-~~~~~~~~---~~~~-~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l  193 (371)
                      .+. .......+   ...+ ..+++...++..+..+...+. ..+..|..++++++...+....+..+|..+|+...+++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l  156 (390)
T TIGR02718        77 QCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVL  156 (390)
T ss_pred             HHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            332 22222222   1222 333344444444555555554 67778888888888888888888888999999888888


Q ss_pred             cCcCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhhhhhhhhcccCCc
Q 017429          194 AQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREAT  273 (371)
Q Consensus       194 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (371)
                      .+                .++|+.++++.++..++..+..++++|+++++.+++   +                  ....
T Consensus       157 ~~----------------~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~~~~~~---~------------------~~~~  199 (390)
T TIGR02718       157 FG----------------KFGQRPAFLLVACVPLASLVCVLWLKDRAVASPEAP---L------------------ARRA  199 (390)
T ss_pred             HH----------------HhCHHHHHHHHHHHHHHHHHHHHHcCCCCcCccccc---h------------------hhHH
Confidence            87                667788888888777665555555554332111000   0                  0012


Q ss_pred             cccccccccchHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 017429          274 PKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGP  353 (371)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~  353 (371)
                      ..++.+|+|.++......++..........+.+.|..+      .|+++.+.|.+....++...+.+.++.+++.||+|+
T Consensus       200 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~------~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~  273 (390)
T TIGR02718       200 SLFRFFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVD------AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGL  273 (390)
T ss_pred             HHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHh------cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhH
Confidence            34567888888877777777777667777777777755      699999999998888765554433688999999999


Q ss_pred             hHHHHHHHHhh
Q 017429          354 IMVARIAGVNF  364 (371)
Q Consensus       354 ~~~~~~~~~~~  364 (371)
                      ++.+..+.++.
T Consensus       274 ~~~l~~~~~~~  284 (390)
T TIGR02718       274 WRTFILGVGLA  284 (390)
T ss_pred             HHHHHHHHHHH
Confidence            99887766543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.86  E-value=1.9e-19  Score=161.27  Aligned_cols=177  Identities=12%  Similarity=0.104  Sum_probs=144.4

Q ss_pred             HHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHH
Q 017429           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (371)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~  124 (371)
                      .+|+..|+.-+ ........|++.+++|+++++.     .|.+.++++.++.++.++.|+++||+|.|+++.++.+.+.+
T Consensus        31 ~lC~fGF~~e~-R~n~s~a~p~L~~elglT~~qv-----~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl  104 (511)
T TIGR00806        31 YLCFYGFMAQF-RPGESFITPYLLTVLNFTEETV-----TNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVC  104 (511)
T ss_pred             HHHHHHHHHHh-hchHHHHHHHHHHHcCCCHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence            34444443333 3445566788999999998762     68999999999999999999999999999999999999999


Q ss_pred             HHHHHHhHHHHHHHHHHHHHHhhhccchhHHHHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCCCCcc
Q 017429          125 FNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLF  204 (371)
Q Consensus       125 ~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~~~~~  204 (371)
                      ..++.++++++..+.+.|++.|++.|...+...++..++|+++|+++.++..++..+|.++++++++.+.        .+
T Consensus       105 ~t~L~~fa~Sl~~L~i~R~llGvaEA~~~A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~--------s~  176 (511)
T TIGR00806       105 VWLLLLLGTSVWHMQLMEVFYSVTMAARIAYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV--------TL  176 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hc
Confidence            9999999999999999999999999887755999999999999999999999999999999999999943        34


Q ss_pred             cccccccCccchhHHHHHHHHHHHHHHHHhhcccccc
Q 017429          205 SSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLH  241 (371)
Q Consensus       205 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  241 (371)
                      ||++..      ...++......++++..+++|..++
T Consensus       177 gWr~y~------~Ln~Isl~s~~~a~~~a~~LP~~~~  207 (511)
T TIGR00806       177 GWISYS------TLNIISLVFMTFSVFLALFLKRPKR  207 (511)
T ss_pred             CchhHH------HHHHHHHHHHHHHHHHHHhCCCCch
Confidence            565533      2233444444556667788885443

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.85  E-value=1.3e-24  Score=202.57  Aligned_cols=301  Identities=19%  Similarity=0.282  Sum_probs=193.4

Q ss_pred             HHHhhcccccchhhHHHHH--Hhhcccccccc---chhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHH
Q 017429           50 VLCTALPISSLFPFLYFMI--KDFQIAKREED---IGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (371)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~  124 (371)
                      .+..+.+........+...  ..+..+.....   .....++..+...+|..+|++++|.++||+|||+.++++.++..+
T Consensus         9 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i   88 (451)
T PF00083_consen    9 GFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMII   88 (451)
T ss_pred             HHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhccccccccccccccccccccccccccccc
Confidence            3555555554444443332  22333322211   234478899999999999999999999999999999999999999


Q ss_pred             HHHHHHhHH---HHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCC
Q 017429          125 FNTLFGLSV---NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY  200 (371)
Q Consensus       125 ~~~~~~~~~---~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~  200 (371)
                      +.++.++++   +++.+.++|++.|++.|...+. ..++.|..|+++|++..++.+.+..+|..++..++..+.+..   
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~---  165 (451)
T PF00083_consen   89 GSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYS---  165 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc---
Confidence            999999999   9999999999999998887775 999999999999999999999999999998888876553311   


Q ss_pred             CCcccccccccCccchhHHHHHHHHHHHHHHHHhhccccccCCCCCCccchhhh--hhhh---hhhhhhhhhc------c
Q 017429          201 PNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSY--DALE---SASAEVKEEE------G  269 (371)
Q Consensus       201 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~------~  269 (371)
                          +      .+.||..+...++..++.++..+++||+|++...+++.+++.+  ++.+   ..+++.+++.      .
T Consensus       166 ----~------~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~  235 (451)
T PF00083_consen  166 ----D------NWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQ  235 (451)
T ss_pred             ----c------cccccccccccccccccccccccccccccceeccccccccccccccccccccccccccccccccccccc
Confidence                0      2446666677777777777777899999998765544333221  1110   0000111100      1


Q ss_pred             cCCccccccccccc-hHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccch-hhhHHHHHHHHHHHHHHHHHHHHH
Q 017429          270 REATPKKSLLKNWP-LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQ-MVGEVLAITGFSLLVFQLSLYPFL  347 (371)
Q Consensus       270 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~~~~~~~~~~~~~~~~~~~~~l  347 (371)
                      +.+..++++++++. .+.......+..............|.  +......+.+.. ....   ..++...++. +++..+
T Consensus       236 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~--~~i~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~  309 (451)
T PF00083_consen  236 ESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYS--PSIFENAGISNSFLATL---ILGLVNFLGT-LLAIFL  309 (451)
T ss_pred             ccceeeeeccccccccccccccccccccccccccccccccc--ccccccccccccccccc---cccccccccc-cccccc
Confidence            11134667777654 22222222222222222212222222  222223455555 2222   2333444444 355689


Q ss_pred             HHHhchhHHHHHHHHhhhhccc
Q 017429          348 ERILGPIMVARIAGVNFEHSVA  369 (371)
Q Consensus       348 ~~r~~~~~~~~~~~~~~~~~~~  369 (371)
                      .||+|||+++..+.....++.+
T Consensus       310 ~~~~GRr~~~i~~~~~~~~~~~  331 (451)
T PF00083_consen  310 IDRFGRRKLLIIGLLLMAICSL  331 (451)
T ss_pred             cccccccccccccccccccccc
Confidence            9999999999888877666554

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.84  E-value=2.1e-19  Score=170.47  Aligned_cols=267  Identities=16%  Similarity=0.151  Sum_probs=178.0

Q ss_pred             HHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 017429           68 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGS  147 (371)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~  147 (371)
                      .+.++.+...      ..+..+++++|..+|++++|+++||+|||+++++++++..++.++.++++|++.+++.|++.|+
T Consensus       110 ~~~~c~~~~~------~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~  183 (521)
T KOG0255|consen  110 WNLVCDSSTL------VALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGF  183 (521)
T ss_pred             hceeeCcHhH------HHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHh
Confidence            3455556666      8899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccchhH-HHHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCCCCcccccccccCccchhHHHHHHHHH
Q 017429          148 LNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFA  226 (371)
Q Consensus       148 ~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  226 (371)
                      +.+.... ...+++|++++++|+.+..+ ......++.++|..++++..                  +||+.+++..+..
T Consensus       184 ~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~------------------~Wr~~~~~~~~~~  244 (521)
T KOG0255|consen  184 FGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR------------------DWRWLFWIISIPS  244 (521)
T ss_pred             hccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh------------------hHHHHHHHHHHHH
Confidence            8666655 59999999999999999999 66777777778888887764                  4666667777777


Q ss_pred             HHHHHHHhhccccccCCCCCCccchhhh--hhhhh-------h---h-hh-h-hhh---cccCCccccccccccchHHHH
Q 017429          227 FGVTIAAFWLPETLHRHNDDDDSCDVSY--DALES-------A---S-AE-V-KEE---EGREATPKKSLLKNWPLMSSI  288 (371)
Q Consensus       227 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~--~~~~~-------~---~-~~-~-~~~---~~~~~~~~~~~~~~~~~~~~~  288 (371)
                      ++.++..+..||++++...+.+.+++.+  ++..+       .   . .. . ++.   ....+....++++.|++....
T Consensus       245 ~~~~~~~~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~  324 (521)
T KOG0255|consen  245 GLFLLLWFLPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRT  324 (521)
T ss_pred             HHHHHHHHccCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHH
Confidence            7766667777799998665544332221  11100       0   0 00 0 000   011223466777777544333


Q ss_pred             HHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHhhhhcc
Q 017429          289 IVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVNFEHSV  368 (371)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~  368 (371)
                      +...+..+.....      |....+...++|.+...   .....+....... ...+...++.|||.....+..+..+++
T Consensus       325 ~~~~~~~~~~~~~------y~gl~~~~~~lg~~~~~---~~~~~~~~~~p~~-~~~~~~~~~~gR~~~~~~~~~~~~~~~  394 (521)
T KOG0255|consen  325 LYLLFIWFVFSLV------YYGLSLNVSGLGGNIYL---NFTLSGLVELPAY-FRNGLLLPEFGRRPPLFLSLFLAGIGL  394 (521)
T ss_pred             HHHHHHHHHHhHH------HHhhhhhhhhcCchHHH---HHHHHHHHHhhHH-HHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence            3322222111111      11111111113333322   2233333444444 466788899999999888877766665


Q ss_pred             c
Q 017429          369 A  369 (371)
Q Consensus       369 ~  369 (371)
                      +
T Consensus       395 ~  395 (521)
T KOG0255|consen  395 L  395 (521)
T ss_pred             H
Confidence            4

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.84  E-value=4.3e-20  Score=171.58  Aligned_cols=271  Identities=16%  Similarity=0.130  Sum_probs=183.9

Q ss_pred             ccchhhH-HHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhh----cCCc-hHHHHHHHHHHHHHHHHHh
Q 017429           58 SSLFPFL-YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR----YGRK-PVIIMGTASVVIFNTLFGL  131 (371)
Q Consensus        58 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~Grr-~~l~~~~~~~~~~~~~~~~  131 (371)
                      ....+++ +.+.+++|++..+      .|++.++..+..++..|+.|+++||    +||| +.++.+.+..+++.+++..
T Consensus        16 ~~~~~~l~~~~~~~~g~s~~~------~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~   89 (437)
T TIGR00792        16 AIVSTYLLFFYTDVLGLSAAF------VGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFT   89 (437)
T ss_pred             HHHHHHHHHHHHHccCCCHHH------HHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHh
Confidence            3444444 4667789999999      9999999999999999999999997    6774 4567788888877777765


Q ss_pred             HHH------HHHHHHHHHHHhhhccchhH-HHHHHhhhc-cccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCCCCc
Q 017429          132 SVN------FWMAVLTRFLLGSLNGLLGP-IKAYACEIF-REEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNL  203 (371)
Q Consensus       132 ~~~------~~~~~~~r~l~G~~~~~~~~-~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~~~~  203 (371)
                      .++      ...+++.+++.+++.+...+ ..++..|.. ++++|++..++.+.+..+|..+++.+.+.+....++..  
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~--  167 (437)
T TIGR00792        90 TPDFSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGD--  167 (437)
T ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc--
Confidence            432      45667778888887776555 478888887 57889999999888888888887777666553211100  


Q ss_pred             ccccccccCccchhHHHHHHHHHHHHHH-HHhhccccccCCCCCCccchhhhhhhhhhhhhhhhhcccCCcccccccccc
Q 017429          204 FSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNW  282 (371)
Q Consensus       204 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (371)
                             ...+|+..+.+.+++.++..+ ..+..||++++...++++                  +.+..+..++++++|
T Consensus       168 -------~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~~~------------------~~~~~~~~~~l~~~~  222 (437)
T TIGR00792       168 -------DKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKNIEK------------------KLSLKQIFKALFKND  222 (437)
T ss_pred             -------ccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCccccc------------------CCCHHHHHHHHhCCH
Confidence                   045677777777766655443 455667654211110000                  001112355678899


Q ss_pred             chHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHH
Q 017429          283 PLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGV  362 (371)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~  362 (371)
                      +++...+..++..........+.+.|....     ++ ++...+.+.....++.+++. ++.+++.||+|+|+.+..+.+
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~i~~ii~~-~~~~~l~~r~g~~~~~~~~~~  295 (437)
T TIGR00792       223 QLLILCLAYLFYNLAFNIKNGVQVYYFTYV-----LG-DPELFSYMGSIAIVAGLIGV-LLFPRLVKKFGRKILFAGGIL  295 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHcchhheeEeee-----cC-ChHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCcHHHHHHHHH
Confidence            888877776666655555444444444332     34 45566777777778888877 578999999999999888877


Q ss_pred             hhhhcc
Q 017429          363 NFEHSV  368 (371)
Q Consensus       363 ~~~~~~  368 (371)
                      +.+++.
T Consensus       296 ~~~~~~  301 (437)
T TIGR00792       296 LMVLGY  301 (437)
T ss_pred             HHHHHH
Confidence            665543

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.83  E-value=3.8e-19  Score=151.41  Aligned_cols=305  Identities=16%  Similarity=0.108  Sum_probs=203.6

Q ss_pred             hhHHHHHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHH
Q 017429           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (371)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~  119 (371)
                      +..........+...+......-+.|......|.+..+      ..++....+.+..+++..+|..+|++|||+.+....
T Consensus        77 ~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q------~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~  150 (528)
T KOG0253|consen   77 WYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQ------APLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTF  150 (528)
T ss_pred             hhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhh------hhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhH
Confidence            33344444455555554445555667777888988888      999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHhhhccchhHHHHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCC
Q 017429          120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK  199 (371)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~  199 (371)
                      +..++..++.+.++|+.++++.|.+.|+|.|......++-.|..|..+|...+-+. ..+.+|.++...++-.+..    
T Consensus       151 l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~----  225 (528)
T KOG0253|consen  151 LVTGVFGVISGASPNFASLCVFRALWGFGVGGLPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMS----  225 (528)
T ss_pred             HHHHHHHHhhcCCCCeehhhHHHHHHhccCCCccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHH----
Confidence            99999999999999999999999999999888444588889999999999877666 8999999999999988877    


Q ss_pred             CCCcccccccccCccchhHHHHHHHHHHHHHHHHhhccccccCCCCCCccchhhh--hhhhhh---------------hh
Q 017429          200 YPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSY--DALESA---------------SA  262 (371)
Q Consensus       200 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~--~~~~~~---------------~~  262 (371)
                                  +.+||+......+...+....++++||+|+....+.++.++.+  +++..+               .+
T Consensus       226 ------------~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~  293 (528)
T KOG0253|consen  226 ------------NFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDR  293 (528)
T ss_pred             ------------hhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhh
Confidence                        4444544466677777778889999999998766554443322  111100               00


Q ss_pred             hhhhh------c----ccCCccccccccccchHHHHHHHHHHHhhhhhHHHHH---HHHhcCCCccCC----------c-
Q 017429          263 EVKEE------E----GREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIF---SLWANSPKKLGG----------L-  318 (371)
Q Consensus       263 ~~~~~------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~----------~-  318 (371)
                      +++|+      +    .........++...-.+..+...+.+....+.+....   .-+.+....-..          . 
T Consensus       294 ~e~e~~~~~~~~~~a~ke~rg~~~nLlsp~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~  373 (528)
T KOG0253|consen  294 QEQEESDLDDSKSSAAKEVRGGTTNLLSPKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETR  373 (528)
T ss_pred             hhhhhhchhhhhhccccccccchHhhcChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhh
Confidence            00010      0    0111223344444444445555554444444433321   111111110000          0 


Q ss_pred             ---cccchhhhHH-HHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHhhhhccc
Q 017429          319 ---NYSTQMVGEV-LAITGFSLLVFQLSLYPFLERILGPIMVARIAGVNFEHSVA  369 (371)
Q Consensus       319 ---~~s~~~~~~~-~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~  369 (371)
                         ..+.. .-+. ..+..+..+.+. ++.+++.||+|||+.+..+++++.+.+.
T Consensus       374 ~~c~~s~~-~dYrdllitslaefPGl-LIt~~iverlGRKkTMal~l~~f~iflf  426 (528)
T KOG0253|consen  374 ANCPLSVA-KDYRDLLITSLAEFPGL-LITGVIVERLGRKKTMALSLILFGIFLF  426 (528)
T ss_pred             hcCCccch-hHHHHHHHHHHhhCCch-hHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence               00111 1111 234456666766 5889999999999999999888777654

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.83  E-value=7.5e-18  Score=143.95  Aligned_cols=260  Identities=16%  Similarity=0.114  Sum_probs=209.6

Q ss_pred             cccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHHhHHH
Q 017429           55 LPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVN  134 (371)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~  134 (371)
                      -....+.|.++.+.+++|+|.++      .|+++++..+...+.+++..+++.|+|.++.+..++++.+++.++-... +
T Consensus        26 ~~itsvgPLL~~Ir~~~gls~s~------aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~   98 (395)
T COG2807          26 PAITSVGPLLDEIRQDLGLSFSV------AGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-G   98 (395)
T ss_pred             hhhhhhhhhHHHHHHHhcccHHH------HHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-c
Confidence            35577889999999999999999      9999999999999999999999999999999999999999999998877 7


Q ss_pred             HHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCCCCcccccccccCc
Q 017429          135 FWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKF  213 (371)
Q Consensus       135 ~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~~~~~g~~~~~~~~  213 (371)
                      ...++.+-.+.|.+.+..++. +.++-+.||++ -+..++++....++|+.+++.+...+.+.               ..
T Consensus        99 ~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~---------------~~  162 (395)
T COG2807          99 LPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQH---------------SG  162 (395)
T ss_pred             HHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHh---------------hc
Confidence            778889999999999999996 99999999875 68899999999999999999999988872               12


Q ss_pred             cchhHHHHHHHHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhhhhhhhhcccCCccccccccccchHHHHHHHHH
Q 017429          214 PYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCV  293 (371)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (371)
                      +|+....+-+..++++++.++  |...++...+.                     ....++...++|+|.-|...+.+.+
T Consensus       163 gW~~aL~~WAl~allAl~~Wl--Pq~~r~~~~~~---------------------~~~~~~~~~vw~~~~aW~vtLfmGl  219 (395)
T COG2807         163 GWRGALGFWALLALLALLIWL--PQALREQAASI---------------------ATKLVSVRKVWRSPLAWQVTLFMGL  219 (395)
T ss_pred             cHHHHHHHHHHHHHHHHHHHh--hhccccccccc---------------------ccccccccccccCchhHHHHHHHHh
Confidence            456555555666655555544  44322211110                     0111234568999999999999999


Q ss_pred             HHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHh-chhHHHHHHHHhhhhc
Q 017429          294 FSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL-GPIMVARIAGVNFEHS  367 (371)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~~~~~~~~~~~~~~~  367 (371)
                      .+...+....|+|.++.+      .|+|+.++|.+.+...+..++.++ ..+.+.+|. ++|+.......++.++
T Consensus       220 qS~~~Y~~~~WLP~ili~------~G~sa~~aG~llsl~~l~~~~~~l-l~P~la~R~~n~r~~~~~~~~~~l~G  287 (395)
T COG2807         220 QSLLYYIVIGWLPAILID------RGLSAAEAGSLLSLMQLAQLPTAL-LIPLLARRSKNQRPLVVLALLLMLVG  287 (395)
T ss_pred             hHHHHHHHHHHHHHHHHH------cCCCHHHhhhHHHHHHHHHHHHHH-HHHHHHHHhcccchHHHHHHHHHHHH
Confidence            999999999999999988      599999999999999999999994 778888764 4555555544444443

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.82  E-value=1.1e-20  Score=165.46  Aligned_cols=317  Identities=14%  Similarity=0.101  Sum_probs=193.0

Q ss_pred             HHHHHHHHHHHhhcccccchhhHHHHHHhh-cccccc-ccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHH
Q 017429           42 ELFSIWIIVLCTALPISSLFPFLYFMIKDF-QIAKRE-EDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (371)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~  119 (371)
                      .+.......+.+.++...++...|.+...+ |.+++. +.-+...+.+..+..+|.++|++++|+++||+|||+++...+
T Consensus        42 ~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~l  121 (538)
T KOG0252|consen   42 AIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKEL  121 (538)
T ss_pred             HHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHH
Confidence            334555677778888888888777665443 322111 111122788889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhHH-------HHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhh
Q 017429          120 ASVVIFNTLFGLSV-------NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGG  191 (371)
Q Consensus       120 ~~~~~~~~~~~~~~-------~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~  191 (371)
                      ++..++++++++..       -.+++...|+++|+|.|.-.|. .+..+|...++.||...+...+..+.|...|.+++-
T Consensus       122 iImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~  201 (538)
T KOG0252|consen  122 IIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVAL  201 (538)
T ss_pred             HHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHH
Confidence            99999998777632       3578899999999999998886 889999999999999888876666666665555444


Q ss_pred             hhcCcCCCCCCccccc---ccccCccchhHHHHHHHHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhh----h--h
Q 017429          192 FLAQPAEKYPNLFSSE---SLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESA----S--A  262 (371)
Q Consensus       192 ~l~~~~~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~----~--~  262 (371)
                      .+.....+   .++-+   .-- ..-||..+.+.++.++..+...+.+||+++......++.+...++.++.    .  +
T Consensus       202 Iv~~~fe~---~~~~~~~~~~l-d~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~~~~~~  277 (538)
T KOG0252|consen  202 IVSAIFEK---IFNGPSTYPHL-DGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAAGDMKKVLSVDIEAE  277 (538)
T ss_pred             HHHHHHhc---cCCCCCCchHH-HHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhhhccccccccccchh
Confidence            43221110   01110   001 3458988888888888888888899999876522211111000111000    0  0


Q ss_pred             hhhhhcccCCcc----ccccccc---cchHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhH--------
Q 017429          263 EVKEEEGREATP----KKSLLKN---WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGE--------  327 (371)
Q Consensus       263 ~~~~~~~~~~~~----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~--------  327 (371)
                      +..+...+.+..    +...+..   +.+......++++-...++.+.+....+..      .|+.+....+        
T Consensus       278 ~~~~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~------ig~~~~~~~~~~~~~vA~  351 (538)
T KOG0252|consen  278 STAESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSA------IGVIPSANTYHELFKVAE  351 (538)
T ss_pred             hccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHh------hccCCCcchHHHHHHHHH
Confidence            000001111111    1111211   333445556666655555555444444332      4554444333        


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHhhhhcc
Q 017429          328 VLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVNFEHSV  368 (371)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~  368 (371)
                      ...+...++.+-...+...+.|++||+++.+.|+.++.+..
T Consensus       352 ~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~  392 (538)
T KOG0252|consen  352 GNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFF  392 (538)
T ss_pred             HHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHH
Confidence            11222222222122355567899999999999988876644

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.79  E-value=2.2e-17  Score=148.81  Aligned_cols=203  Identities=16%  Similarity=0.263  Sum_probs=162.0

Q ss_pred             cccCCChhHHHHHHHHHHHhhcccccchhhHHHHHHh--hccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCC
Q 017429           34 TKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKD--FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGR  111 (371)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Gr  111 (371)
                      +..+.+||.++...+..++.....+.+.+..-.+.++  .+.+.+.      .|++.++..++..++++.+|.++.|.+.
T Consensus        27 ~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~f------fG~viaa~slg~~i~~liF~~Ws~k~~~  100 (488)
T KOG2325|consen   27 DERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATF------FGLVIAASSLGHAIFSLIFGIWSNKTGS  100 (488)
T ss_pred             cccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcch------hhHHHHHHHHHHHhcchhhcccccccCC
Confidence            3445678889999999999999999998888777777  5555555      9999999999999999999999999997


Q ss_pred             -chHHHHHHHHHHHHHHHH-Hh---HH-HHHHHHHHHHHHhhhccchhHHHHHHhhhccccchhhhhHhhhhhhhhHHhH
Q 017429          112 -KPVIIMGTASVVIFNTLF-GL---SV-NFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLII  185 (371)
Q Consensus       112 -r~~l~~~~~~~~~~~~~~-~~---~~-~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~  185 (371)
                       |+.++.+.++.++++++. ++   .+ .-+.++++|++.|+|.|......+|+++....++|.++++....+..+|..+
T Consensus       101 ~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~il  180 (488)
T KOG2325|consen  101 VKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIIL  180 (488)
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHH
Confidence             899999999999999988 33   23 5788999999999999999999999999999999999999999988999999


Q ss_pred             HHhhhhhhcCcCC-CCCCcccccccccCccchhHHHHHHHHHHHHHH-HHhhccccccCCCCC
Q 017429          186 GPALGGFLAQPAE-KYPNLFSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHNDD  246 (371)
Q Consensus       186 g~~i~~~l~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~  246 (371)
                      ||.++..+..... ++  .+.+...  ...+..+.++++++.++.++ ..++++|.++...++
T Consensus       181 Gp~~q~~f~~Lg~~G~--~i~~~~~--~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~  239 (488)
T KOG2325|consen  181 GPTIQLAFTPLGEKGF--MILPGLI--FNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDK  239 (488)
T ss_pred             hHHHHHHHhhhcCCce--EEcCcce--EEecchHHHHHHHHHHHHHHHHHhheeecccCcccc
Confidence            9999888765321 11  1111111  23466777888888877654 566778877655443

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.79  E-value=1.3e-17  Score=156.63  Aligned_cols=166  Identities=16%  Similarity=0.154  Sum_probs=131.3

Q ss_pred             hHHHHHHHHHHHhhcccccchhhHHH-HHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhh-cCCchHHHHH
Q 017429           41 TELFSIWIIVLCTALPISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR-YGRKPVIIMG  118 (371)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~  118 (371)
                      +.++.++...++..+..+...+.++. +.+++|++..+      .+++.+.+........+++|+++|| +|||+.++.+
T Consensus        21 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~------a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g   94 (500)
T PRK09584         21 KAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEAD------SITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLG   94 (500)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence            34566667777777777777777764 45889999888      7787777766666667899999999 5999999999


Q ss_pred             HHHHHHHHHHHHhHH-HHHHHHHHHHHHhhhccchhHH-HHHHhhhccccc--hhhhhHhhhhhhhhHHhHHHhhhhhhc
Q 017429          119 TASVVIFNTLFGLSV-NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEH--QALGLSTVSTAWGIGLIIGPALGGFLA  194 (371)
Q Consensus       119 ~~~~~~~~~~~~~~~-~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~g~~i~~~l~  194 (371)
                      .++.+++..++++++ +.+.+++.|++.|++.|...+. .++++|++|+++  |..++++++.+.++|..+||.+++++.
T Consensus        95 ~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~  174 (500)
T PRK09584         95 AIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLA  174 (500)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            999999988888764 4566778899999998887775 899999998653  456788889999999999999999998


Q ss_pred             CcCCCCCCcccccccccCccchhHHHHHHHHHHH
Q 017429          195 QPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFG  228 (371)
Q Consensus       195 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  228 (371)
                      +                .++|+..|.+.++..++
T Consensus       175 ~----------------~~g~~~~F~i~~i~~~i  192 (500)
T PRK09584        175 A----------------KYGWSVAFALSVVGMLI  192 (500)
T ss_pred             H----------------hhCHHHHHHHHHHHHHH
Confidence            8                55666666665543333

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.77  E-value=2.8e-16  Score=142.50  Aligned_cols=276  Identities=16%  Similarity=0.244  Sum_probs=194.5

Q ss_pred             HHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcC-CchHHHHHHHHHHH
Q 017429           46 IWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYG-RKPVIIMGTASVVI  124 (371)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G-rr~~l~~~~~~~~~  124 (371)
                      +....++.....+...|+++.+.++.|.+..|      +|.+.++..+..+++++++|.++||.+ +|+.+.+..++.++
T Consensus         7 Ls~~~f~~f~~~G~~~p~~~~~L~~~G~s~~q------IG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~   80 (400)
T PF03825_consen    7 LSLMYFLYFFAYGAFLPYLPLYLESRGFSGTQ------IGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSAL   80 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHH
Confidence            44555666677777889999999999999999      999999999999999999999999986 57888788887777


Q ss_pred             HHHHHHhHHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhh-hhhcCcCCCCCC
Q 017429          125 FNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG-GFLAQPAEKYPN  202 (371)
Q Consensus       125 ~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~-~~l~~~~~~~~~  202 (371)
                      ........++++.+++..++..+......|. .++..+...  +++.-.|-.-...++|-.++.... +.+...      
T Consensus        81 ~~~~~~~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~------  152 (400)
T PF03825_consen   81 ALLLLAFSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGY------  152 (400)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhh------
Confidence            7777777888888888877777776666664 666666554  234445556666666666664432 222220      


Q ss_pred             cccccccccCccchhHHHHHHHHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhhhhhhhhcccCCcccccccccc
Q 017429          203 LFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNW  282 (371)
Q Consensus       203 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (371)
                       .+      .......+++.+...++.....+.+|+.|+++..+++.++                  ....+..+++|+|
T Consensus       153 -~~------~~~~~~~~~i~~~~~~ll~~~~l~lp~~~~~~~~~~~~~~------------------~~~~~~~~llk~~  207 (400)
T PF03825_consen  153 -LG------ISGTSLIFYIAAILSLLLAGFALFLPKTPPKRSAKESVKK------------------LLGLDALKLLKNP  207 (400)
T ss_pred             -hc------cccccHHHHHHHHHHHHHHHHHHhCCCCccccccCCCccc------------------ccchHHHHHhcCc
Confidence             00      1111223344444444444456677877633222211111                  1112335789999


Q ss_pred             chHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHH
Q 017429          283 PLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGV  362 (371)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~  362 (371)
                      ++....+..++.......++++.+.|+.+.     -|.+....+.+++...+..++.- ...+++.+|+|.++++.++++
T Consensus       208 ~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~-----gg~~~~~~g~~~~l~~~aEi~~f-~~~~~~~~r~g~~~ll~~a~~  281 (400)
T PF03825_consen  208 RFLVFLLAAFLIGISHAAYYTFFSIYLQEL-----GGYSGSTIGILWALGVVAEIPFF-FFSGRFLKRFGIKWLLLLALV  281 (400)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----ccchhhHHHHHHHHHHHHHHHHH-HHHHHHHHhcCHHHHHHHHHH
Confidence            999888888888888888999999998774     22777888888888888888877 578999999999999988887


Q ss_pred             hhhh
Q 017429          363 NFEH  366 (371)
Q Consensus       363 ~~~~  366 (371)
                      ..++
T Consensus       282 ~~~v  285 (400)
T PF03825_consen  282 AYAV  285 (400)
T ss_pred             HHHH
Confidence            7543

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.76  E-value=6.1e-17  Score=148.67  Aligned_cols=305  Identities=15%  Similarity=0.113  Sum_probs=183.6

Q ss_pred             hhHHHHHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhh----hcCCchHH
Q 017429           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD----RYGRKPVI  115 (371)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~Grr~~l  115 (371)
                      .++++.+....+...+......+..+.+.+++|.+...      .+++..+..+...+.+|+.|.++|    |+||||.+
T Consensus         3 ~~~li~~~~~~~Giq~~~~l~~~~l~~yl~~lg~~~~~------~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~   76 (477)
T TIGR01301         3 LRKLLRVASVAAGVQFGWALQLSLLTPYVQELGIPHAW------ASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPF   76 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHH
Confidence            35566666666666777788888888899999999988      999999999999999999999999    59999998


Q ss_pred             HHH-HHHHHHHHHHHHhHHHHH-----------------HHHHHHHHHhhhccchhH-HHHHHhhhccccch--hhhhHh
Q 017429          116 IMG-TASVVIFNTLFGLSVNFW-----------------MAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQ--ALGLST  174 (371)
Q Consensus       116 ~~~-~~~~~~~~~~~~~~~~~~-----------------~~~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~r--~~~~~~  174 (371)
                      +.+ .+..+++.++++++++..                 ..+++-.+..++.....+ ..++++|.+|+++|  +.+.++
T Consensus        77 il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~  156 (477)
T TIGR01301        77 IAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAY  156 (477)
T ss_pred             HHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHH
Confidence            875 666666667776655532                 222233333445554444 59999999998865  578899


Q ss_pred             hhhhhhhHHhHHHhhhhhhcCcCCCCCCccccc-----ccccCccchhHHHHHHHHHHHH-HHHHhhccccccCCCCCCc
Q 017429          175 VSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSE-----SLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDD  248 (371)
Q Consensus       175 ~~~~~~~g~~~g~~i~~~l~~~~~~~~~~~g~~-----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~  248 (371)
                      .+...++|+++|+.++++.....     .+++.     ... ..+.+..|++.++..++. ++..+..||.+....++.+
T Consensus       157 ~~~~~~lG~ilg~~~g~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~  230 (477)
T TIGR01301       157 FSFFMAIGNVLGYAAGAYSGLYK-----IFPFTKTEACGVS-CANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFI  230 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHH-----hcccccccccccc-cchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccch
Confidence            99999999999999998752100     01100     000 224567777777666654 4456778887643221110


Q ss_pred             cchhhhhhhhhhhhhhhhhcccCCcccccccc-ccchHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccch----
Q 017429          249 SCDVSYDALESASAEVKEEEGREATPKKSLLK-NWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQ----  323 (371)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~----  323 (371)
                      ++     +.++..+.  +.+...+.-++.+.+ .+.++..+++.++..+..+.+..+.+.|..+..    ++-++.    
T Consensus       231 ~~-----~~~~~~~~--~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v----~~~~~~~~~~  299 (477)
T TIGR01301       231 NS-----EAAPPSKH--GEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREV----YGGSVNQGAK  299 (477)
T ss_pred             hh-----hccccccc--chhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH----cCCCCcchhH
Confidence            00     00000000  000000011222222 345666777777665555555544444433211    111110    


Q ss_pred             --h----hhHHHHHHHHHHHHHHHHHHHHHHHHhch-hHHHHHHHHhhhhcc
Q 017429          324 --M----VGEVLAITGFSLLVFQLSLYPFLERILGP-IMVARIAGVNFEHSV  368 (371)
Q Consensus       324 --~----~~~~~~~~~~~~~~~~~~~~~~l~~r~~~-~~~~~~~~~~~~~~~  368 (371)
                        +    -.+....+++...+.+ ++..++.+|+|+ |+....+.++.++|+
T Consensus       300 y~~gvr~G~~~l~~~s~~~~i~s-~~l~~l~~~~g~~k~~~~~s~~~~~~~l  350 (477)
T TIGR01301       300 YDDGVRAGAFGLMLNSVVLGITS-IGMEKLCRGWGAGKRLWGIVNIILAICL  350 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence              1    1223344445555656 467889999985 555566655555554

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PTZ00207 hypothetical protein; Provisional

Probab=99.76  E-value=1.2e-16  Score=149.69  Aligned_cols=129  Identities=13%  Similarity=0.151  Sum_probs=108.5

Q ss_pred             ccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHHhH-----
Q 017429           58 SSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS-----  132 (371)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----  132 (371)
                      +.++.+.+.+.+++|++..+      .+++.++. .....++++.|++.||+|||+++.++.++..++.++++++     
T Consensus        44 y~fsv~s~~L~~~lgls~~~------l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i  116 (591)
T PTZ00207         44 YAFNLISGAMQARYNLTQRD------LSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVI  116 (591)
T ss_pred             HHHHHHHHHHHHHhCcCHHH------HHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            45567778999999999998      88887763 3445677889999999999999999999999999999987     


Q ss_pred             -HHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhH-HHhhhhhhc
Q 017429          133 -VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLII-GPALGGFLA  194 (371)
Q Consensus       133 -~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-g~~i~~~l~  194 (371)
                       .+++.+++.|++.|++.+...+. ...+.+++| ++||++.|+...+.++|..+ +++..+++.
T Consensus       117 ~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~  180 (591)
T PTZ00207        117 EGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS  180 (591)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             68999999999999998877664 778889986 67999999999999999975 555555543

>TIGR00788 fbt folate/biopterin transporter

Probab=99.74  E-value=7.7e-17  Score=150.12  Aligned_cols=296  Identities=14%  Similarity=0.053  Sum_probs=185.9

Q ss_pred             ChhHHHHHHHHHHHhhcccccchh-hHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcC-----Cc
Q 017429           39 PITELFSIWIIVLCTALPISSLFP-FLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYG-----RK  112 (371)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G-----rr  112 (371)
                      +...+..+....+..++. +.... ..+.+.+++|++.++      ++...+...+...+-.+ +|+++||++     ||
T Consensus        24 ~~~~~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~------i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr   95 (468)
T TIGR00788        24 PRVVLAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGAR------YQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKR   95 (468)
T ss_pred             cchHHHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccch
Confidence            334455566677788887 55444 445666679999999      98889999999888555 999999998     77


Q ss_pred             hHHHHHHHHHH-HHHHHHHhHHHHH-HHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhh---hhhhhhHHhHH
Q 017429          113 PVIIMGTASVV-IFNTLFGLSVNFW-MAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTV---STAWGIGLIIG  186 (371)
Q Consensus       113 ~~l~~~~~~~~-~~~~~~~~~~~~~-~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~---~~~~~~g~~~g  186 (371)
                      +.++++.++.. +.....+..++.. ...+..++.+++.+...++ -++..|..+ +++....+..   .....+|..+|
T Consensus        96 ~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg  174 (468)
T TIGR00788        96 WYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLIS  174 (468)
T ss_pred             HHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHH
Confidence            87888776663 4433333334433 3334778888888887775 999999998 5554433333   33345899999


Q ss_pred             HhhhhhhcCcCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhhhhhhh
Q 017429          187 PALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKE  266 (371)
Q Consensus       187 ~~i~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (371)
                      +.++|.+.+                .++|+..+.+.+...++..+..+++||++.....+.++.+.....  .......+
T Consensus       175 ~~l~G~l~~----------------~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~~~~~--~~~~~~~~  236 (468)
T TIGR00788       175 SLLGGPLLD----------------KTLTRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLEMNMA--LLTLGVLA  236 (468)
T ss_pred             HHHHHHHHH----------------hcCcchHHHHHHHHHHHHHHHHHhcccccccccccccccchhhhh--hhhhhHHH
Confidence            999999988                556777777777776666666778888642111111000000000  00000000


Q ss_pred             hcccCCccccccccccchHHHHHHHHH-HHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHH
Q 017429          267 EEGREATPKKSLLKNWPLMSSIIVYCV-FSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYP  345 (371)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  345 (371)
                      ...+.....++.+++|.++...+..++ +.......   .+.+..   ....+|+++.+.|.+....+++.+++.. +.+
T Consensus       237 ~~~~~~~~l~~~l~~~~i~~~l~fifl~~~~~~~~~---~~~f~~---~~~~lG~s~~~~G~~~~~~~v~~i~g~~-~~~  309 (468)
T TIGR00788       237 NVKVQILGLRGAIQLLEIAKPLIFIFLSYANLPGAS---GSVFCA---TTQCLPGGPSFSGMSKVVGNLGSLCGVG-GYD  309 (468)
T ss_pred             HHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhcCCCC---ceeEEE---EcccCCCCcchhhhHHHHHHHHHHHHHH-HHH
Confidence            000001223345667777765554444 22111111   111111   1123899999999999999999999885 667


Q ss_pred             HHHHHhchhHHHHHHHHhhhhcc
Q 017429          346 FLERILGPIMVARIAGVNFEHSV  368 (371)
Q Consensus       346 ~l~~r~~~~~~~~~~~~~~~~~~  368 (371)
                      +..+|++.|+++.++.++.+++.
T Consensus       310 ~~~~~~~~r~~l~~~~~l~~~~~  332 (468)
T TIGR00788       310 RFLKTFPYRLLFGVTTLLYTLSS  332 (468)
T ss_pred             HHHhhCCHHHHHHHHHHHHHHHH
Confidence            77789999999998888777644

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.73  E-value=8.7e-17  Score=150.56  Aligned_cols=282  Identities=12%  Similarity=0.081  Sum_probs=173.2

Q ss_pred             HHHHHHHhhcccccchhhHH-HHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhh----hcCC-chHHHHHH
Q 017429           46 IWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD----RYGR-KPVIIMGT  119 (371)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~Gr-r~~l~~~~  119 (371)
                      ..+..+...+......++++ ++.+.+|++...      +|.+..+.-+..++..|+.|.++|    |+|| |+.++++.
T Consensus        11 yg~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~------vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~   84 (473)
T PRK10429         11 YGFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGL------VGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGT   84 (473)
T ss_pred             hccchhHHhHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhh
Confidence            33444444455555566665 556667999999      999999999999999999999999    6698 56666777


Q ss_pred             HHHHHHHHHHHhHH------HHHHHHHHHHHHhhhccchhH-HHHHHhhhc-cccchhhhhHhhhhhhhhHHhHHHhhhh
Q 017429          120 ASVVIFNTLFGLSV------NFWMAVLTRFLLGSLNGLLGP-IKAYACEIF-REEHQALGLSTVSTAWGIGLIIGPALGG  191 (371)
Q Consensus       120 ~~~~~~~~~~~~~~------~~~~~~~~r~l~G~~~~~~~~-~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~i~~  191 (371)
                      +..+++..++...+      .+..+++..++.+++.....+ ..++.+|+. ++++|.+..+.-..+.++|+.+.+.+..
T Consensus        85 i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~  164 (473)
T PRK10429         85 LANSVVLFLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTL  164 (473)
T ss_pred             HHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777765554322      233455555666776666555 488899998 5889999888877777777666655544


Q ss_pred             hhcCcCCCCCCcccccccccCccchhHHHHHHHHHHHHH-HHHhhccccccCCCCCCccchhhhhhhhhhhhhhhhhccc
Q 017429          192 FLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGR  270 (371)
Q Consensus       192 ~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (371)
                      .+.+..++...         ..+|+....+.++..++.. +..+..||.+.....+.+++                ++.+
T Consensus       165 ~~~~~~g~~~~---------~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~----------------~~~~  219 (473)
T PRK10429        165 PFVNYVGGGDR---------GFGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQVSAEG----------------SHLT  219 (473)
T ss_pred             HHHHHhCCCch---------hhhHHHHHHHHHHHHHHHHHHHHcCceecCCccccccccc----------------cCCC
Confidence            43321110000         2234544445444444433 33444666532211100000                0011


Q ss_pred             CCccccccccccchHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 017429          271 EATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI  350 (371)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r  350 (371)
                      .....+.+++||+++..++..++............++|....     .+ +....+.+....+++.+++. ++.+++.||
T Consensus       220 ~~~~~~~~~~n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~-----~~-~~~~~~~~~~~~~i~~ii~~-~~~~~l~~r  292 (473)
T PRK10429        220 LKDIVALIYKNDQLSCLLGMALAYNIASNIINGFAIYYFTYV-----IG-DADLFPYYLSYAGAANLVTL-ILFPRLVKS  292 (473)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhheeeEEEEE-----CC-CHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            122344567888888777777766655555544544343332     22 45556666666667777777 577899999


Q ss_pred             hchhHHHHHHHHhhh
Q 017429          351 LGPIMVARIAGVNFE  365 (371)
Q Consensus       351 ~~~~~~~~~~~~~~~  365 (371)
                      +|+|+.+..+.++.+
T Consensus       293 ~gkk~~~~~~~~~~~  307 (473)
T PRK10429        293 LSRRILWAGASIFPV  307 (473)
T ss_pred             cCcHHHHHHHHHHHH
Confidence            999999876665544

>PRK09669 putative symporter YagG; Provisional

Probab=99.73  E-value=1.6e-16  Score=147.77  Aligned_cols=284  Identities=17%  Similarity=0.060  Sum_probs=171.7

Q ss_pred             ChhHHHHHHHHHHHhhcccccchhhH-HHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhh----cCCc-
Q 017429           39 PITELFSIWIIVLCTALPISSLFPFL-YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR----YGRK-  112 (371)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~Grr-  112 (371)
                      ++++.+.-.+..+...+.......++ +++.+++|++..+      +|.+.++..+...+..|+.|.++||    +||| 
T Consensus         7 ~~~~~~~yg~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~------~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrr   80 (444)
T PRK09669          7 TTKDKIGYGLGDTACNLVWQTVMLFLAYFYTDVFGLSAAI------MGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFR   80 (444)
T ss_pred             cHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHcccceeeEeeecCCCCCCCcc
Confidence            34444433333333333333334444 4677889999999      9999999999999999999999998    7874 


Q ss_pred             hHHHHHHHHHHHHHHHHHhHH------HHHHHHHHHHHHhhhccchhH-HHHHHhhhc-cccchhhhhHhhhhhhhhHHh
Q 017429          113 PVIIMGTASVVIFNTLFGLSV------NFWMAVLTRFLLGSLNGLLGP-IKAYACEIF-REEHQALGLSTVSTAWGIGLI  184 (371)
Q Consensus       113 ~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~r~l~G~~~~~~~~-~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~  184 (371)
                      +.++.+.+..++...+....+      ....+++..++.+.+.....+ ..++.+|+. ++++|.+..+....+..+|..
T Consensus        81 p~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~  160 (444)
T PRK09669         81 PYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGL  160 (444)
T ss_pred             hhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence            555567677766665544432      245566666666665444444 488999987 567899888888888888888


Q ss_pred             HHHhhhhhhcCcCCCCCCcccccccccCccchhHHHHHHHHHHHHHH-HHhhccccccCCCCCCccchhhhhhhhhhhhh
Q 017429          185 IGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAE  263 (371)
Q Consensus       185 ~g~~i~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~  263 (371)
                      +++.+...+....++..        . +.+|+..+.+.+++.++..+ ..+..+|......++                 
T Consensus       161 i~~~~~~pl~~~~~~~~--------~-~~g~~~~~~i~~ii~~v~~~~~~~~~~e~~~~~~~~-----------------  214 (444)
T PRK09669        161 IVSVIALPLVDILGKGD--------E-QKGYFYAMMVMGLLGVVLFFCCFFMTKERYTPEVDN-----------------  214 (444)
T ss_pred             HHHHHHHHHHHHhCCCc--------h-hhhHHHHHHHHHHHHHHHHHHHhCCeEEecCCCCcC-----------------
Confidence            87776655443211000        0 34566656665555544433 334445532211000                 


Q ss_pred             hhhhcccCCccccccccccchHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHH
Q 017429          264 VKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSL  343 (371)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  343 (371)
                          +.+..+..+.+++||+++..++..++.............+|....     .+ ++...+.+.....+..+++. ++
T Consensus       215 ----~~~~~~~~~~~~~n~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~-----~~-~~~~~~~~~~~~~i~~ii~~-~~  283 (444)
T PRK09669        215 ----SSSVWKDLKLLLGNSQWRIMFIFNVVLLTAVVTRGGATLYYVNYV-----LL-RPDLATLFLVTGMIAGLFGA-LL  283 (444)
T ss_pred             ----CCCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhhheeeeee-----cC-CHHHHHHHHHHHHHHHHHHH-HH
Confidence                001123456778899988877766655544444344333333222     22 23333444444445556655 57


Q ss_pred             HHHHHHHhchhHHHHHHHHhhh
Q 017429          344 YPFLERILGPIMVARIAGVNFE  365 (371)
Q Consensus       344 ~~~l~~r~~~~~~~~~~~~~~~  365 (371)
                      .+++.||+|+|+....+.+...
T Consensus       284 ~~~l~~r~gk~~~~~~~~~~~~  305 (444)
T PRK09669        284 SERLLGKFDRVRAFKWTIVAFV  305 (444)
T ss_pred             HHHHHHHhChHHHHHHHHHHHH
Confidence            7899999999998877665444

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.73  E-value=1.6e-15  Score=139.93  Aligned_cols=170  Identities=14%  Similarity=0.227  Sum_probs=131.1

Q ss_pred             hHHHHHHHHHHHhhcccccchhhHHHH-HHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhc-CCchHHHHH
Q 017429           41 TELFSIWIIVLCTALPISSLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-GRKPVIIMG  118 (371)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-Grr~~l~~~  118 (371)
                      +.++.++...+...+..+.....+|.+ .+++|.++.+      .+.+.+.+.....++.+++|+++||+ ||||+++++
T Consensus         9 ~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~------a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG   82 (493)
T PRK15462          9 RAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNH------AYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLG   82 (493)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHH
Confidence            455566666677777777777788755 5668999998      99999999999999999999999999 999999999


Q ss_pred             HHHHHHHHHHHHhHH-HHHHHHHHHHHHhhhccchhH-HHHHHhhhcccc--chhhhhHhhhhhhhhHHhHHHhhhhhhc
Q 017429          119 TASVVIFNTLFGLSV-NFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREE--HQALGLSTVSTAWGIGLIIGPALGGFLA  194 (371)
Q Consensus       119 ~~~~~~~~~~~~~~~-~~~~~~~~r~l~G~~~~~~~~-~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~g~~i~~~l~  194 (371)
                      .++..++.++++... +...+++...+.+++.|...+ ..++++|.+|++  +|.+++++.+.+.++|+.++|.+.+++.
T Consensus        83 ~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~  162 (493)
T PRK15462         83 ALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQ  162 (493)
T ss_pred             HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHH
Confidence            999998887766533 223344444445566666656 488999999975  6999999999999999999999999998


Q ss_pred             CcCCCCCCcccccccccCccchhHHHHHHHHHHHHHHH
Q 017429          195 QPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIA  232 (371)
Q Consensus       195 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (371)
                      +                .++|+..|...++..++.++.
T Consensus       163 ~----------------~~Gw~~~F~iaaigm~l~li~  184 (493)
T PRK15462        163 E----------------EYSWAMGFGLAAVGMIAGLVI  184 (493)
T ss_pred             h----------------hhChHHHHHHHHHHHHHHHHH
Confidence            7                556666666655444444433

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.70  E-value=1.3e-16  Score=147.73  Aligned_cols=266  Identities=15%  Similarity=0.129  Sum_probs=188.6

Q ss_pred             hHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhh----hcCCchH-HHHHHHHHHHHHHHHHhH-H---
Q 017429           63 FLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD----RYGRKPV-IIMGTASVVIFNTLFGLS-V---  133 (371)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~Grr~~-l~~~~~~~~~~~~~~~~~-~---  133 (371)
                      ..+.+.+.+|++...      .|++..+.-+..++..|+.|.++|    |+||||. ++++.+..+++..++... +   
T Consensus        24 ~~~f~~~~~gl~~~~------~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~   97 (428)
T PF13347_consen   24 LLYFYTDVLGLSPAL------AGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGL   97 (428)
T ss_pred             HHHHHHHHcCCCHHH------HHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchh
Confidence            345677778999988      999999999999999999999999    8997655 456778888877776654 3   


Q ss_pred             ----HHHHHHHHHHHHhhhccchhH-HHHHHhhhcc-ccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCCCCccccc
Q 017429          134 ----NFWMAVLTRFLLGSLNGLLGP-IKAYACEIFR-EEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSE  207 (371)
Q Consensus       134 ----~~~~~~~~r~l~G~~~~~~~~-~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~~~~~g~~  207 (371)
                          ...++.+..++..++...... ..++.+|+.+ +++|.+..+.-+.+..+|..+...+.+.+.+..++...     
T Consensus        98 ~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~-----  172 (428)
T PF13347_consen   98 SFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDT-----  172 (428)
T ss_pred             hhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCcc-----
Confidence                223456666666777666555 4899999997 57899999998888888887777777777653221100     


Q ss_pred             ccccCccchhHHHHHHHHHHHHH-HHHhhccccccCCCCCCccchhhhhhhhhhhhhhhhhcccCCccccccccccchHH
Q 017429          208 SLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMS  286 (371)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (371)
                          ..+|+....+.+++.++.. +..+..||.+++..+++                   ++.+..+..+++++||+++.
T Consensus       173 ----~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~-------------------~~~~~~~~~~~~~~nr~~~~  229 (428)
T PF13347_consen  173 ----SNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQE-------------------KKISLRDSLRSLFRNRPFRI  229 (428)
T ss_pred             ----chHHHHHHHHHHHHHHHHhhhhhheeeeccccccccc-------------------cccccccchhhhcccchHHH
Confidence                1146666666665555543 44566677211111111                   12223456788899999998


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHhhhh
Q 017429          287 SIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVNFEH  366 (371)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~  366 (371)
                      .....++............++|....     .|.+ ...+.+.....++.+++. ++.+++.||+|+|+.+..+.++.++
T Consensus       230 l~~~~~~~~~~~~~~~~~~~y~~~~v-----l~~~-~~~~~~~~~~~~~~~v~~-~~~~~l~~r~gk~~~~~~~~~~~~~  302 (428)
T PF13347_consen  230 LLLAFFLQWLAFALMNTFLPYYFTYV-----LGNE-GLISIFMLIFFVASIVGS-PLWGRLSKRFGKKKVYIIGLLLAAL  302 (428)
T ss_pred             HHHHHHHHHhhhhhhhhHHHHHHHHH-----hcCc-hhhHHHHHHHHHHHHHHH-HHHHHHHHHccceeehhhhHHHHHH
Confidence            88888888777777777777777665     4444 456666677777878877 5789999999999999988888776


Q ss_pred             ccc
Q 017429          367 SVA  369 (371)
Q Consensus       367 ~~~  369 (371)
                      +.+
T Consensus       303 ~~~  305 (428)
T PF13347_consen  303 GFL  305 (428)
T ss_pred             HHH
Confidence            544

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.69  E-value=2e-18  Score=161.48  Aligned_cols=312  Identities=17%  Similarity=0.201  Sum_probs=2.9

Q ss_pred             HHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHH
Q 017429           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (371)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~  124 (371)
                      .+++..+.+.+..+.....++.+.++|+++.++      .|++.+.+-++..+..++..++.+|..|-|.+-+|.++.++
T Consensus         7 ~~~~~~~~q~~~~g~~~~~lttiErRF~l~S~~------~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~   80 (539)
T PF03137_consen    7 FLCLLGLFQMMVSGYVNSSLTTIERRFGLSSSQ------SGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGL   80 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHH
Confidence            345555666666666677788999999999999      99999999999999999999999998888888899999999


Q ss_pred             HHHHHHhHH--------------------------------------------------HHHHHHHHHHHHhhhccchhH
Q 017429          125 FNTLFGLSV--------------------------------------------------NFWMAVLTRFLLGSLNGLLGP  154 (371)
Q Consensus       125 ~~~~~~~~~--------------------------------------------------~~~~~~~~r~l~G~~~~~~~~  154 (371)
                      +.+++++.+                                                  -+..++++.++.|+|.....+
T Consensus        81 g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~t  160 (539)
T PF03137_consen   81 GSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYT  160 (539)
T ss_dssp             -----------------------------------------------------------------------SSS------
T ss_pred             HHHHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCcc
Confidence            988876411                                                  124677888999999999888


Q ss_pred             H-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCCCC-------cccccccccCccchhHHHHHHHHH
Q 017429          155 I-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPN-------LFSSESLFGKFPYFLPCLCISLFA  226 (371)
Q Consensus       155 ~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~~~-------~~g~~~~~~~~~~~~~~~~~~~~~  226 (371)
                      . .+|+-|..++++-+..+|+.++...+|.++|-++++.+.+...++..       .-..+..| -..||.-|++.+.+.
T Consensus       161 LG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~W-vGAWWLGfli~g~~~  239 (539)
T PF03137_consen  161 LGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRW-VGAWWLGFLICGILL  239 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccH-HHHHHHHHHHHHHHH
Confidence            7 99999999999999999999999999999999999988764222211       11112223 446888888888888


Q ss_pred             HHHHHHHhhccccccCCCCCCccchh---hhhhhhhhhhhh-------hhhcccCCccccccccccchHHHHHHHHHHHh
Q 017429          227 FGVTIAAFWLPETLHRHNDDDDSCDV---SYDALESASAEV-------KEEEGREATPKKSLLKNWPLMSSIIVYCVFSL  296 (371)
Q Consensus       227 ~~~~~~~~~~~e~~~~~~~~~~~~~~---~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (371)
                      ++..+..+++|+..+...+..+.++.   ..++.+......       .+..++-+...+++++||.+....+.......
T Consensus       240 ~l~aipl~~FPk~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~  319 (539)
T PF03137_consen  240 FLSAIPLFFFPKKLPGTSERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESF  319 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHcCCccCCCcccccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence            77777777777654443111111000   000000000000       11223445567889999999999999999999


Q ss_pred             hhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhch--hHHHHHHHHhhhhcc
Q 017429          297 HDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGP--IMVARIAGVNFEHSV  368 (371)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~--~~~~~~~~~~~~~~~  368 (371)
                      ...++.++.|-|++..     ++.++..++++.....+.+.+...+++|++.+|++.  |+.+.++.+...+++
T Consensus       320 ~~~G~~tF~pKylE~Q-----F~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~  388 (539)
T PF03137_consen  320 IVSGFATFLPKYLESQ-----FGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSV  388 (539)
T ss_dssp             --------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHH-----hCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHH
Confidence            9999999999998887     899999999999888887776666899999998754  455555555544443

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PRK09848 glucuronide transporter; Provisional

Probab=99.68  E-value=3.6e-15  Score=138.95  Aligned_cols=282  Identities=17%  Similarity=0.119  Sum_probs=165.0

Q ss_pred             ChhHHHHHHHHHHHhhcccccchhhHH-HHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhc----CCch
Q 017429           39 PITELFSIWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY----GRKP  113 (371)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~----Grr~  113 (371)
                      +++..+.-.+..+...+......++++ ++.+.+|++..+      +|.+.+...+..++..++.|+++||.    ||||
T Consensus         6 ~~~~~~~yg~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~------~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~   79 (448)
T PRK09848          6 SWRTIVGYSLGDVANNFAFAMGALFLLSYYTDVAGVGAAA------AGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFR   79 (448)
T ss_pred             cHHHHHhhccchHHhHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHhhhhheeeeecCCCCCcCch
Confidence            334444333444444444444555554 566677999999      99999999999999999999999986    7776


Q ss_pred             HH-HHHHHHHHHHHHHH-HhH------HHHHHHHHHHHHHhhhccchhH-HHHHHhhhcc-ccchhhhhHhhhhh-----
Q 017429          114 VI-IMGTASVVIFNTLF-GLS------VNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFR-EEHQALGLSTVSTA-----  178 (371)
Q Consensus       114 ~l-~~~~~~~~~~~~~~-~~~------~~~~~~~~~r~l~G~~~~~~~~-~~~~~~~~~~-~~~r~~~~~~~~~~-----  178 (371)
                      .. .++.+...+...+. ...      ......++..++.+++.+...+ ..++..|+.+ +++|.+..+.-..+     
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~  159 (448)
T PRK09848         80 PFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTF  159 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHH
Confidence            54 55555444443332 211      1223344455666777666665 3666677654 46788776655443     


Q ss_pred             hhhHHhHHHhhhhhhcCcCCCCCCcccccccccCccchhHHHHHHHHHHHH-HHHHhhccccccCCCCCCccchhhhhhh
Q 017429          179 WGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDAL  257 (371)
Q Consensus       179 ~~~g~~~g~~i~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~  257 (371)
                      ..++..++|.+++.....       .       ..+|.....+.+++.++. ++.....||+++.+.++           
T Consensus       160 ~~~~~~~~p~i~~~~g~~-------~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~e~~~~~~~~-----------  214 (448)
T PRK09848        160 VCLAFLIGPSIKNSSPEE-------M-------VSVYHFWTIVLAIAGMVLYFICFKSTRENVVRIVAQ-----------  214 (448)
T ss_pred             HHHHHHHHHHHHHhCCCc-------h-------hhhHHHHHHHHHHHHHHHHHHHHcCcEeccCCCccC-----------
Confidence            234555666666543210       0       001111112222222222 22333445543211110           


Q ss_pred             hhhhhhhhhhcccCCccccccccccchHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHH
Q 017429          258 ESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLL  337 (371)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~  337 (371)
                                 ......++.+++||+++...+..++............++|....     +|.++...++......++.+
T Consensus       215 -----------~~~~~~~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~  278 (448)
T PRK09848        215 -----------PSLKISLQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYV-----LNDTGLFTVLVLVQNLVGTV  278 (448)
T ss_pred             -----------CCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeee-----cCChHHHHHHHHHHHHHHHH
Confidence                       01112356788999998888777777666666666666666554     67666555554444455566


Q ss_pred             HHHHHHHHHHHHHhchhHHHHHHHHhhhhcc
Q 017429          338 VFQLSLYPFLERILGPIMVARIAGVNFEHSV  368 (371)
Q Consensus       338 ~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~  368 (371)
                      ++. ++.+++.||+++|+.+..+.++..++.
T Consensus       279 ~~~-~l~~~l~~r~g~~~~~~~g~~~~~i~~  308 (448)
T PRK09848        279 ASA-PLVPGMVARIGKKNTFLIGALLGTCGY  308 (448)
T ss_pred             HHH-HHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence            666 578899999999999988877765543

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.68  E-value=3.3e-16  Score=146.93  Aligned_cols=310  Identities=16%  Similarity=0.186  Sum_probs=236.1

Q ss_pred             HHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHH
Q 017429           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (371)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~  124 (371)
                      .+.+..+...+....+...+..+.++|+++.++      .|++.+.+-++..+...+..++.-|.-|-+.+-+|+++.++
T Consensus       101 ~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~------sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~l  174 (735)
T KOG3626|consen  101 LLSLAAFAQGLYVGYFNSVITTIERRFKISSSQ------SGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGL  174 (735)
T ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCc------ceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHH
Confidence            455666777777777777888999999999999      99999999999999999999999999999999999999999


Q ss_pred             HHHHHHhHH-------------------H--------------------------------HH-HHHHHHHHHhhhccch
Q 017429          125 FNTLFGLSV-------------------N--------------------------------FW-MAVLTRFLLGSLNGLL  152 (371)
Q Consensus       125 ~~~~~~~~~-------------------~--------------------------------~~-~~~~~r~l~G~~~~~~  152 (371)
                      +.+++++.+                   +                                ++ .++++.++.|+|....
T Consensus       175 gsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi  254 (735)
T KOG3626|consen  175 GSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPI  254 (735)
T ss_pred             HHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCC
Confidence            999887621                   0                                22 5667789999999999


Q ss_pred             hHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCC-CCc---ccccccccCccchhHHHHHHHHHH
Q 017429          153 GPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY-PNL---FSSESLFGKFPYFLPCLCISLFAF  227 (371)
Q Consensus       153 ~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~-~~~---~g~~~~~~~~~~~~~~~~~~~~~~  227 (371)
                      .+. .+|+-|...+++-...+|+..+...+|.++|-++++++.....++ ...   ..-+..| -..||.-|++.+.+.+
T Consensus       255 ~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrW-IGAWWlGFLi~g~~~~  333 (735)
T KOG3626|consen  255 FTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRW-IGAWWLGFLICGALLL  333 (735)
T ss_pred             ccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcch-hhHHHHHHHHHHHHHH
Confidence            887 999999999999999999999999999999999999987654333 111   1112233 5568999999999999


Q ss_pred             HHHHHHhhccccccCCCCCCccchhhhhhhhhh----hhhhhhhcccCCccccccccccchHHHHHHHHHHHhhhhhHHH
Q 017429          228 GVTIAAFWLPETLHRHNDDDDSCDVSYDALESA----SAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSE  303 (371)
Q Consensus       228 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (371)
                      +..+.++++|+..++...+.+..+......++.    .....+...+-+...+++++||-+...++...+......++.+
T Consensus       334 ~~a~p~f~fPk~lp~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~t  413 (735)
T KOG3626|consen  334 FSAVPLFFFPKELPKSQKRKRARDLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYIT  413 (735)
T ss_pred             HHHHHHHhCcccCccccccchhhhhcccccccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHH
Confidence            888888888877655433211111110000000    0000011123345567889999999999999999999999999


Q ss_pred             HHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhc--hhHHHHHHHHhhhh
Q 017429          304 IFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILG--PIMVARIAGVNFEH  366 (371)
Q Consensus       304 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~--~~~~~~~~~~~~~~  366 (371)
                      ++|-|+...     +|.++..+..+.+..++..+...++++|++.+|+.  .|....+.++...+
T Consensus       414 FlPKyLE~Q-----fg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l  473 (735)
T KOG3626|consen  414 FLPKYLETQ-----FGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVL  473 (735)
T ss_pred             hhHHHHHHH-----cCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHH
Confidence            999999888     99999999999999999998888889999999774  44444444444333

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.68  E-value=2.3e-15  Score=141.70  Aligned_cols=174  Identities=16%  Similarity=0.250  Sum_probs=125.0

Q ss_pred             HHhhcccccchhhHHHHH-HhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHH-
Q 017429           51 LCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTL-  128 (371)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~-  128 (371)
                      ++.....+....+.|.+. +++|.+..+      .++..+...++..++.++.|+++||+|||+.+..+.++..+..+. 
T Consensus       260 ~~~~~~~~~~~~~~p~~l~~~~g~s~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~  333 (490)
T PRK10642        260 IATNVTYYMLLTYMPSYLSHNLHYSEDH------GVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPA  333 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            333444555566777665 567888776      777778888999999999999999999999988887654433322 


Q ss_pred             H--HhHHHHHHHHHHHHHHhhhccchhH-HHHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCCCCccc
Q 017429          129 F--GLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFS  205 (371)
Q Consensus       129 ~--~~~~~~~~~~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~~~~~g  205 (371)
                      .  ..+++...+++.+++.|++.+.... ...+++|.+|++.|+++++..+....+++.++|.+.+++.+.         
T Consensus       334 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~---------  404 (490)
T PRK10642        334 FILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVES---------  404 (490)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence            2  2234566777888888886555444 478889999999999999975444556667889999888762         


Q ss_pred             ccccccCccchhHHHHHHHHHHHHHHHHhhccccccCCCC
Q 017429          206 SESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHND  245 (371)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  245 (371)
                            ..+|+.++.+..+.+++.++..+++||++++..+
T Consensus       405 ------~~~~~~~~~~~~~~~~i~~~~~~~~pes~~~~~~  438 (490)
T PRK10642        405 ------TQNLMMPAYYLMVVAVIGLITGVTMKETANRPLK  438 (490)
T ss_pred             ------hCCchHHHHHHHHHHHHHHHHHHHhccccCCCCC
Confidence                  1234555556666666666677788999887554

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.67  E-value=3.6e-15  Score=133.05  Aligned_cols=284  Identities=15%  Similarity=0.150  Sum_probs=170.0

Q ss_pred             hHHHHHHHHHHHhhcccccchhhHHHHHHh-hccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHH
Q 017429           41 TELFSIWIIVLCTALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (371)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~  119 (371)
                      +..+......+...+..+...|+.+...++ .|++.++      +|.+.++..+...+.+|+.|.++||.|.||-++...
T Consensus         7 ~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~------iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i   80 (412)
T PF01306_consen    7 KNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTE------IGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFI   80 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH------HHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHH------HHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHH
Confidence            455666666667777788888999877764 8999999      999999999999999999999999999766655443


Q ss_pred             HHHHH--HH-HHHHhHHHH-HHHHHHHHHHhhhcc----chhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhh
Q 017429          120 ASVVI--FN-TLFGLSVNF-WMAVLTRFLLGSLNG----LLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG  190 (371)
Q Consensus       120 ~~~~~--~~-~~~~~~~~~-~~~~~~r~l~G~~~~----~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~  190 (371)
                      .+..+  +. +...+.+-. ..+.++-++.|+..+    ...++ -+++.+..  ++.+.-.|-.-...++|.+++..++
T Consensus        81 ~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~  158 (412)
T PF01306_consen   81 AILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLA  158 (412)
T ss_dssp             HHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHh
Confidence            32221  21 111222211 112223333333322    22232 33333332  2233445666778889999999999


Q ss_pred             hhhcCcCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhhc-cccccCCCCCCccchhhhhhhhhhhhhhhhhcc
Q 017429          191 GFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL-PETLHRHNDDDDSCDVSYDALESASAEVKEEEG  269 (371)
Q Consensus       191 ~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (371)
                      |.+.+                . +....+++....+++..++.+.. |+.++.....+.. +..             +++
T Consensus       159 G~L~~----------------i-~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~-~~~-------------~~~  207 (412)
T PF01306_consen  159 GILFN----------------I-NPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADAL-GAK-------------KDK  207 (412)
T ss_dssp             HHHHH----------------H-HHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTS-SS-----------------
T ss_pred             heeee----------------e-CccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhccc-ccC-------------CCC
Confidence            99875                1 12334455555555444443333 3333221111100 000             000


Q ss_pred             cCCccccccccccchHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 017429          270 REATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLER  349 (371)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~  349 (371)
                      ...+...+++|+|++|...+...........+...++.|.......  .+.+....|++.+...+..++.. .+.+++.+
T Consensus       208 ~~~~~~~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~--~~~g~~~~G~l~s~~v~~E~~~m-~~~p~li~  284 (412)
T PF01306_consen  208 VSLKDVLSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQS--AGQGNQMYGYLWSVQVFLEALMM-FFSPWLIN  284 (412)
T ss_dssp             --HHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSS--HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred             CcHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cccChhHHhHHHHHHHHHHHHHH-HHHHHHHH
Confidence            1112346788999999888776666666667766677776554222  35566779999998888888877 58899999


Q ss_pred             HhchhHHHHHHHHhhhh
Q 017429          350 ILGPIMVARIAGVNFEH  366 (371)
Q Consensus       350 r~~~~~~~~~~~~~~~~  366 (371)
                      |+|.|+.++++..++.+
T Consensus       285 rig~k~~Lllag~i~~i  301 (412)
T PF01306_consen  285 RIGAKNLLLLAGVIMAI  301 (412)
T ss_dssp             HH-HHHHHHHHHHHHHH
T ss_pred             hcChHhHHHHHHHHHHH
Confidence            99999999887776543

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.67  E-value=1.8e-15  Score=146.12  Aligned_cols=141  Identities=14%  Similarity=0.108  Sum_probs=117.8

Q ss_pred             HHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhccchhH-HHHHHhhhc
Q 017429           85 GYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIF  163 (371)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~-~~~~~~~~~  163 (371)
                      .+...+..++.+++.++.|+++||+|||++++++.++.+++.++.++.++...+++.+++.|++.+...+ ..++++|++
T Consensus       598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~  677 (742)
T TIGR01299       598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELY  677 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            3445667788899999999999999999999999999999999888888888888888888886555555 499999999


Q ss_pred             cccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhhccccccC
Q 017429          164 REEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHR  242 (371)
Q Consensus       164 ~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  242 (371)
                      |++.|++++|+.+....+|.++||.+++.+.+                . +...++++.++..+++.++.+++||+...
T Consensus       678 Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~----------------~-~~~~pf~i~a~~lll~~ll~~~LPET~~~  739 (742)
T TIGR01299       678 PSDKRATAFGFLNALCKAAAVLGILIFGSFVG----------------I-TKAAPILFASAALACGGLLALKLPDTRGQ  739 (742)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------h-hhHHHHHHHHHHHHHHHHHHHhCCCCccc
Confidence            99999999999999999999999999998875                2 23456677777767766777778987643

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00889 2A0110 nucleoside transporter

Probab=99.65  E-value=3e-15  Score=137.86  Aligned_cols=175  Identities=12%  Similarity=0.112  Sum_probs=128.1

Q ss_pred             cchhhHHHHHHhhccccccc--cchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHHhHH---
Q 017429           59 SLFPFLYFMIKDFQIAKREE--DIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSV---  133 (371)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~---  133 (371)
                      ......+.+.++.|.+....  ......+...++..++..++.++.|+++||+|||+++..+.++.+++..+.....   
T Consensus       226 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~  305 (418)
T TIGR00889       226 ITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEY  305 (418)
T ss_pred             HHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcch
Confidence            34455566667776553210  0011178889999999999999999999999999999999998888876666532   


Q ss_pred             -HHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhh-hhhhhHHhHHHhhhhhhcCcCCCCCCcccccccc
Q 017429          134 -NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVS-TAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLF  210 (371)
Q Consensus       134 -~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~i~~~l~~~~~~~~~~~g~~~~~  210 (371)
                       +.+.+++.+++.|++.+...+. ..+++|.+|+++|++++++.+ ....+|..+||.++|.+.+..++.+         
T Consensus       306 ~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~---------  376 (418)
T TIGR00889       306 FGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYG---------  376 (418)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccc---------
Confidence             3456777889999988777775 889999999999999999997 6788999999999999988322100         


Q ss_pred             cCccchhHHHHHHHHHHH-HHHHHhhccccccCC
Q 017429          211 GKFPYFLPCLCISLFAFG-VTIAAFWLPETLHRH  243 (371)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~  243 (371)
                       .++|+..+.+.+++.++ .++..+++||+.+..
T Consensus       377 -~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~~  409 (418)
T TIGR00889       377 -TFDWQTMWLFFAGYIAILAVLFMIFFKYSHNAI  409 (418)
T ss_pred             -CCchHHHHHHHHHHHHHHHHHHHHHhCCcccCC
Confidence             13456555666555554 445567778775443

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR01272 gluP glucose/galactose transporter

Probab=99.65  E-value=9.4e-15  Score=128.77  Aligned_cols=213  Identities=15%  Similarity=0.075  Sum_probs=150.4

Q ss_pred             HhHHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCCCC-ccccc
Q 017429          130 GLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPN-LFSSE  207 (371)
Q Consensus       130 ~~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~~~-~~g~~  207 (371)
                      +...++..+++..++.|.|.+...+. +++++++.++|++.+.+++.+.++++|..++|.+++.+.....+... ..+-.
T Consensus         5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~   84 (310)
T TIGR01272         5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA   84 (310)
T ss_pred             HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence            34578999999999999999999886 99999999999999999999999999999999999988842100000 00000


Q ss_pred             ccccCccchhHHHHHHHHHHHHHHHHhhc--cccccCCCCCCccchhhhhhhhhhhhhhhhhcccCCccccccccccchH
Q 017429          208 SLFGKFPYFLPCLCISLFAFGVTIAAFWL--PETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLM  285 (371)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (371)
                      ... .+.|+.++++.+...++..+.+.+.  ||.++++  ++   +..              + ++....++.+++|.++
T Consensus        85 ~~~-~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~~~--~~---~~~--------------~-~~~~~~~~~~~~~~~~  143 (310)
T TIGR01272        85 NAE-AAKVHTPYLLLAGALAVLAIIFAFLPLPELQEAD--VA---RVS--------------S-GDTTQKTSAFQFTHLV  143 (310)
T ss_pred             hHH-HHHHHHHHHHHHHHHHHHHHHHHHccCCCCCccc--cc---ccc--------------c-ccccchhhHHhhHHHH
Confidence            000 1356777775554444443343333  4422110  00   000              0 0001123456788888


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHhhh
Q 017429          286 SSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVNFE  365 (371)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~  365 (371)
                      ...+..+++.....+...+.+.|+.+..   .+|+++.+.+...+.+..+.++++ ++++++.||+++++.+..+.++.+
T Consensus       144 l~~~~~f~yvg~e~~~~~w~~~yl~~~~---~~g~s~~~a~~~~s~~~~~~~iGr-~~~~~l~~r~g~~~~l~~~~~l~~  219 (310)
T TIGR01272       144 LGALGIFVYVGAEVSAGSFLVNFLSDPH---ALGLPEDQAAHFTAYTWGGAMVGR-FIGSAVMPMISQGRYLAFNAFLAV  219 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcc---cCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCHHHHHHHHHHHHH
Confidence            8888888888899999999999996431   168999999999999999999999 589999999999998877766554


Q ss_pred             hc
Q 017429          366 HS  367 (371)
Q Consensus       366 ~~  367 (371)
                      ++
T Consensus       220 ~~  221 (310)
T TIGR01272       220 LL  221 (310)
T ss_pred             HH
Confidence            43

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.63  E-value=1.6e-14  Score=132.27  Aligned_cols=157  Identities=15%  Similarity=0.196  Sum_probs=124.4

Q ss_pred             cchhhHHHH-HHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHHhHHHHHH
Q 017429           59 SLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWM  137 (371)
Q Consensus        59 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~  137 (371)
                      .+....|.+ .+++|.+..+      .+++.+...++..++.++.|+++||+|||+.+..+.+...+........++++.
T Consensus       234 ~~~~~~p~~l~~~~~~~~~~------~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (393)
T PRK15011        234 LYIINMPLFIINELHLPEKL------AGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAI  307 (393)
T ss_pred             HHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            344556644 4678988888      888888877888889999999999999999888777666655555555677888


Q ss_pred             HHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCCCCcccccccccCccch
Q 017429          138 AVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYF  216 (371)
Q Consensus       138 ~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~~~~~g~~~~~~~~~~~  216 (371)
                      +++.+++.+++.|...+. ..+..|.+|+ +|+++.++++....+|..++|.++|.+.+                .++|+
T Consensus       308 ~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~----------------~~g~~  370 (393)
T PRK15011        308 LLGLQLLNAIYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAE----------------IWNYH  370 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHH----------------HhhhH
Confidence            888888888876665554 7788899885 59999999988899999999999999988                56677


Q ss_pred             hHHHHHHHHHHHHHHHHhhccc
Q 017429          217 LPCLCISLFAFGVTIAAFWLPE  238 (371)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~e  238 (371)
                      .++.+.+++.++.++..++.||
T Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~  392 (393)
T PRK15011        371 AVFWFALVMIIATLFCLLRIKD  392 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcC
Confidence            7777777777777777777765

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.63  E-value=1.2e-13  Score=121.78  Aligned_cols=277  Identities=12%  Similarity=0.099  Sum_probs=184.4

Q ss_pred             hhHHHHHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHH
Q 017429           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (371)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~  119 (371)
                      |..++...+..+...+..-.+.+...+...-|+ +.+.      .-|...+|++.++...+.+-|+.||+|-|...+++.
T Consensus        44 W~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~------~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt  116 (480)
T KOG2563|consen   44 WVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSA------ADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGT  116 (480)
T ss_pred             hHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHH------HHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHH
Confidence            334445555556666666666666666777777 5555      778999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhHH------HHH--HHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhh
Q 017429          120 ASVVIFNTLFGLSV------NFW--MAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG  190 (371)
Q Consensus       120 ~~~~~~~~~~~~~~------~~~--~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~  190 (371)
                      ++.+++..+-..+.      .++  ....+..+.+...-.+... ..+..-||++++|..+..+-..+..+|.++|.++.
T Consensus       117 ~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llp  196 (480)
T KOG2563|consen  117 VLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLP  196 (480)
T ss_pred             HHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhcc
Confidence            99999998877643      333  4445666666665555555 45666689999999999999999999999999999


Q ss_pred             hhhcCcCCCCCCcccccccccCccchh--HHHHHHHHHHH-HHHHHhhccccccCCCCCCccchhhhhhhhhhhhhhhhh
Q 017429          191 GFLAQPAEKYPNLFSSESLFGKFPYFL--PCLCISLFAFG-VTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEE  267 (371)
Q Consensus       191 ~~l~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (371)
                      ..+.....+.+          ...|..  .++....++.+ ..+..+..++.|+......+.++.               
T Consensus       197 pilV~~~~~~~----------~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~~---------------  251 (480)
T KOG2563|consen  197 PILVPSSKDSE----------DNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAALQ---------------  251 (480)
T ss_pred             ceecCCCCCcc----------hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhhh---------------
Confidence            88887442111          112222  23333333332 233334444444332221111000               


Q ss_pred             cccCCccccccccccchHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 017429          268 EGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFL  347 (371)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l  347 (371)
                      +.+.....++.++|+++....+++........+..+.+..-+..      -|++...+|+......+++++++. +.+.+
T Consensus       252 ~~~f~~si~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~~------sgY~~~~aG~ig~l~iv~Gmlga~-~~gii  324 (480)
T KOG2563|consen  252 DASFPKSIKSCFKNRQFIILAICYGIGLGLFNSLSTLLNLALCP------SGYEGVFAGYIGALMIVAGMLGAL-ASGII  324 (480)
T ss_pred             cCcHHHHHHHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhcccc------ccCCccccchhHHHHHHHHHHHHH-HHHhh
Confidence            11234567789999999888888877666655554444322221      466668889998888899999995 77777


Q ss_pred             HHHhchhH
Q 017429          348 ERILGPIM  355 (371)
Q Consensus       348 ~~r~~~~~  355 (371)
                      .||.+..+
T Consensus       325 ~Dktk~fk  332 (480)
T KOG2563|consen  325 ADKTKKFK  332 (480)
T ss_pred             hhhhhhHH
Confidence            77766544

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.62  E-value=1.4e-16  Score=131.21  Aligned_cols=285  Identities=15%  Similarity=0.135  Sum_probs=187.1

Q ss_pred             HHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhh-cCCchHHHHHHHHHH
Q 017429           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR-YGRKPVIIMGTASVV  123 (371)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~  123 (371)
                      ..++..|...+.+........++..+.+++.++      ..++-+.|....++.+.++|++.|| +|-|..-++-++...
T Consensus        48 ~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~ak------ftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~  121 (459)
T KOG4686|consen   48 FMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAK------FTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVF  121 (459)
T ss_pred             HHHHhcccceeecCCchhhhhhhhcccccceee------eeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHH
Confidence            344444555556666666677888888888888      8889999999999999999999996 687877777777777


Q ss_pred             HHHHHHHh---HHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCC
Q 017429          124 IFNTLFGL---SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK  199 (371)
Q Consensus       124 ~~~~~~~~---~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~  199 (371)
                      ++.++++.   .+.+|.+.++|++.|+|.-...++ +.+..-++..++-+.++|+......+|..+--.+.+++.+..+.
T Consensus       122 ~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~  201 (459)
T KOG4686|consen  122 LGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGR  201 (459)
T ss_pred             HHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHHH
Confidence            77777664   689999999999999987777776 99999999999999999999888899988776776776653211


Q ss_pred             CCCcccccccccCccchhHHHHHHHHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhhhhhhhhcccCCccccccc
Q 017429          200 YPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLL  279 (371)
Q Consensus       200 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (371)
                         .++-...- ..+-+.  .+....+...++...-+    ...   +++.    +++   .+. ++....+..+..+..
T Consensus       202 ---~~~~~ghT-~LG~~l--~~~~~tc~~slical~l----g~~---D~rA----eri---lh~-e~g~~Ge~pkLtdv~  260 (459)
T KOG4686|consen  202 ---MFPGVGHT-LLGLWL--CFEVKTCKQSLICALSL----GLS---DDRA----ERI---LHL-EEGFLGEEPKLTDVN  260 (459)
T ss_pred             ---hcccchHH-HHHHHH--HHHHHHHHHHHHHHHHh----hhh---hhHH----HHH---Hhh-hcCcccCCccccccc
Confidence               01000000 000000  00011111111111100    000   0000    000   000 000000000111111


Q ss_pred             -cccchHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHH
Q 017429          280 -KNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVAR  358 (371)
Q Consensus       280 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~  358 (371)
                       -.|++|...+..+++....+-+.+.-+.+.+..     +|+|+..++.+.+.......+.+ ++.+.++|+.|++-..+
T Consensus       261 ~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~r-----fGlS~~~a~~i~s~vy~Isav~s-pvfg~i~Dk~G~n~~wv  334 (459)
T KOG4686|consen  261 TFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKR-----FGLSAVSAGNILSTVYGISAVLS-PVFGAISDKYGFNLWWV  334 (459)
T ss_pred             ccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-----hCCChhhccchhhhhhhhhhhhh-hhHHHhHhhhcceehhH
Confidence             257889988888888888888888888777776     99999999999888887787777 58899999999986655


Q ss_pred             HHHH
Q 017429          359 IAGV  362 (371)
Q Consensus       359 ~~~~  362 (371)
                      .+..
T Consensus       335 ~~a~  338 (459)
T KOG4686|consen  335 ASAC  338 (459)
T ss_pred             HHHH
Confidence            5433

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.62  E-value=9.8e-14  Score=119.97  Aligned_cols=268  Identities=15%  Similarity=0.085  Sum_probs=169.3

Q ss_pred             hhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHHhH
Q 017429           53 TALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS  132 (371)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~  132 (371)
                      ...+....+|+...+.+++|.++.+      ++.+....+....+..++.|.++||+|||+.-+..+++..++++.. ..
T Consensus        46 a~~aDWLQGpY~Y~LY~~yg~~~~q------Ia~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k-~~  118 (354)
T PF05631_consen   46 AMAADWLQGPYLYALYESYGFSEHQ------IAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTK-HS  118 (354)
T ss_pred             HHHHHHhhcchhHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH-hc
Confidence            3444556678887777899999999      9999999999999999999999999999999999999999888644 45


Q ss_pred             HHHHHHHHHHHHHhhhccchhHH--HHHHhhhc----cccchhhhhHhhh-hhhhhHHhHHHhhhhhhcCcCCCCCCccc
Q 017429          133 VNFWMAVLTRFLLGSLNGLLGPI--KAYACEIF----REEHQALGLSTVS-TAWGIGLIIGPALGGFLAQPAEKYPNLFS  205 (371)
Q Consensus       133 ~~~~~~~~~r~l~G~~~~~~~~~--~~~~~~~~----~~~~r~~~~~~~~-~~~~~g~~~g~~i~~~l~~~~~~~~~~~g  205 (371)
                      +++..++++|++.|++......+  .=++.|.-    |++..+..++... ...++-.+.+.+++-++.+..        
T Consensus       119 ~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~--------  190 (354)
T PF05631_consen  119 SNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWF--------  190 (354)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHh--------
Confidence            78999999999999998887664  44566653    2222222222222 122222333444444444411        


Q ss_pred             ccccccCccchhHHHHHHHHHHHHHHH-HhhccccccCCCCCCccchhhhhhhhhhhhhhhhhcccCCccccccccccch
Q 017429          206 SESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPL  284 (371)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (371)
                            ..+...||.....+.++..+. ....+|+.....++.+..+.                  .....+.+.+||++
T Consensus       191 ------~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~~~~~~~~~~~------------------~~~a~~~i~~d~ri  246 (354)
T PF05631_consen  191 ------GFGPVAPFDAAIVLLAVAAVLILKTWPENYGDTSSSSSLSGS------------------FREAWRAILSDPRI  246 (354)
T ss_pred             ------CCCCcchHHHHHHHHHHHHHHHHhcccccCCCcccccchHHH------------------HHHHHHHHHcCchh
Confidence                  223356777766666655443 44566765432221111110                  11234566778998


Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHhh
Q 017429          285 MSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVNF  364 (371)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~  364 (371)
                      +...++..++-...+.+....+.-+.      ..+ ...-.|++++.+-+..++|+.+....+.++......+...+.+.
T Consensus       247 l~LG~~qslFE~smy~FVflWtPaL~------~~~-~~~P~GlIFssFM~a~MlGS~lf~~l~s~~~~~e~~l~~v~~~a  319 (354)
T PF05631_consen  247 LLLGLIQSLFEGSMYLFVFLWTPALD------PDD-EELPLGLIFSSFMVAMMLGSSLFSRLLSKSLRPESLLRYVFAVA  319 (354)
T ss_pred             HHHHHHHHHHHHHHHHheeeeeceec------CCC-CCCCchHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            88888777776555544332221111      111 23348999999999999999644355566656555555444444


Q ss_pred             hh
Q 017429          365 EH  366 (371)
Q Consensus       365 ~~  366 (371)
                      .+
T Consensus       320 a~  321 (354)
T PF05631_consen  320 AV  321 (354)
T ss_pred             HH
Confidence            33

>PRK11462 putative transporter; Provisional

Probab=99.62  E-value=4.4e-14  Score=131.58  Aligned_cols=277  Identities=14%  Similarity=0.035  Sum_probs=170.5

Q ss_pred             hhHHHHHHHHHHHhhcccccchhhH-HHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhh----cCCchH
Q 017429           40 ITELFSIWIIVLCTALPISSLFPFL-YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR----YGRKPV  114 (371)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~Grr~~  114 (371)
                      +++-+.-.+..+...+.......++ .++.+..|++...      +|.+..+.-+--++..|+.|.++||    +||||.
T Consensus         8 ~~~k~~Yg~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~------~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp   81 (460)
T PRK11462          8 VKEKIGYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGF------VGTMFLVARALDAISDPCMGLLADRTRSRWGKFRP   81 (460)
T ss_pred             HhHHHhhccchhhhhHHHHHHHHHHHHHHHHhhCCCHHH------HHHHHHHHHHHHHHHhhhheehhccCCCCCCCcch
Confidence            3333333333333344444444444 4667788999988      9999999999999999999999995    787655


Q ss_pred             -HHHHHHHHHHHHHHHHhHHH------HHHHHHHHHHHhhhccchhH-HHHHHhhhcc-ccchhhhhHhhhhhhhhHHhH
Q 017429          115 -IIMGTASVVIFNTLFGLSVN------FWMAVLTRFLLGSLNGLLGP-IKAYACEIFR-EEHQALGLSTVSTAWGIGLII  185 (371)
Q Consensus       115 -l~~~~~~~~~~~~~~~~~~~------~~~~~~~r~l~G~~~~~~~~-~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~  185 (371)
                       ++++.+..+++.+++...++      ...+.+..++..++..+... -.++.+|+.+ +++|.+..+....+..+|..+
T Consensus        82 ~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~  161 (460)
T PRK11462         82 WVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGML  161 (460)
T ss_pred             hHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence             55676777777665544331      34455566666776655555 4889999887 788999999999999998888


Q ss_pred             HHhhhhhhcCcCCCCCCcccccccccCccchhHHHHHHHHHHHHHHH-HhhccccccCCCCCCccchhhhhhhhhhhhhh
Q 017429          186 GPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPETLHRHNDDDDSCDVSYDALESASAEV  264 (371)
Q Consensus       186 g~~i~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (371)
                      ++.+...+....++...         ..+|.....+.+++.++..+. ....+|.++.+.++                  
T Consensus       162 ~~~~~~plv~~~g~~~~---------~~g~~~~~~i~~ii~~i~~~i~~~~~kE~~~~~~~~------------------  214 (460)
T PRK11462        162 STVLMMPLVNLIGGDNK---------PLGFQGGIAVLSVVAFMMLAFCFFTTKERVEAPPTT------------------  214 (460)
T ss_pred             HHHHHHHHHHHhCCCch---------hhhHHHHHHHHHHHHHHHHHHHHhcceeccCCCccC------------------
Confidence            87776655442111100         234555445555544444333 33345532211000                  


Q ss_pred             hhhcccCCccccccccccchHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHH
Q 017429          265 KEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLY  344 (371)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  344 (371)
                          .+.++..+..++|++++......++.............+|....     .|. +...+.+.....++.+++. ++.
T Consensus       215 ----~~~~~~l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~-----~g~-~~~~~~~l~~~~i~~iig~-~l~  283 (460)
T PRK11462        215 ----TSMREDLRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWI-----LGT-PEVFVAFLTTYCVGNLIGS-ALA  283 (460)
T ss_pred             ----CCHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhh-----cCC-hHHHHHHHHHHHHHHHHHH-HHH
Confidence                00112345677888887766555555554444444444444333     332 3334556666777777777 588


Q ss_pred             HHHHHHhchhHHHHHH
Q 017429          345 PFLERILGPIMVARIA  360 (371)
Q Consensus       345 ~~l~~r~~~~~~~~~~  360 (371)
                      +++.||+++|+....+
T Consensus       284 ~~l~~r~gkk~~~~~~  299 (460)
T PRK11462        284 KPLTDWKCKVTIFWWT  299 (460)
T ss_pred             HHHHHHhChHHHHHHH
Confidence            9999999998876543

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.62  E-value=4.1e-14  Score=129.46  Aligned_cols=291  Identities=20%  Similarity=0.305  Sum_probs=186.8

Q ss_pred             HHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHH
Q 017429           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (371)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~  124 (371)
                      ...+..+..++......+..+.....++.+... ......+.-.....+...+.++..|.++||+|||..+....+...+
T Consensus        26 ~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~-~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l  104 (463)
T KOG2816|consen   26 LLFLYMFSWGLSSTVMTNVILYLACTFGDDYQL-ENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTIL  104 (463)
T ss_pred             HHHHHHHHHHhcCcchhhhhhhhhcccccCccc-hhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHH
Confidence            444555555555555555555555555443322 1111123333334677789999999999999999999999999888


Q ss_pred             HHHHHHhHHHHHHHHHHHHHHhhhcc---chhHHHHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCCC
Q 017429          125 FNTLFGLSVNFWMAVLTRFLLGSLNG---LLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYP  201 (371)
Q Consensus       125 ~~~~~~~~~~~~~~~~~r~l~G~~~~---~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~~  201 (371)
                      ..+...+..  +++++   +.++..+   ......++++|....++|...+++.+.+...+..++|.+++.+.+      
T Consensus       105 ~~~~~~~~~--~~~~~---~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~------  173 (463)
T KOG2816|consen  105 PALCLLFQG--YWFFL---LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVK------  173 (463)
T ss_pred             hHHHHHHHH--HHHhh---hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH------
Confidence            887777655  33333   5555333   334459999999999999999999999999999999999999988      


Q ss_pred             CcccccccccCccchhHHHHHHHHHHHHHH-HHhhccccccCCCCCCccchhhhhhhhhhhhhhhhhcccCCcccccccc
Q 017429          202 NLFSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLK  280 (371)
Q Consensus       202 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (371)
                                ..+...++.+..+..++..+ ..+++||+..+.+.+....    .+.+.+.... ++..+........-.
T Consensus       174 ----------~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~  238 (463)
T KOG2816|consen  174 ----------FLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATL----RELTPGSLDS-SHVADAFQSLTKVGP  238 (463)
T ss_pred             ----------hcCchHHHHHHHHHHHHHHHHHhhccccccCccccccccc----cccCCCcccc-hhhhhhhhhhcccCC
Confidence                      56667777777777766544 5778899876544431000    0000000000 000011111112223


Q ss_pred             ccchHHHHHHHHHHHhhhhhHHH-HHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHH
Q 017429          281 NWPLMSSIIVYCVFSLHDMAYSE-IFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARI  359 (371)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~  359 (371)
                      +|..+..+...++.......-.. ..+.|+..+     ++++..+.+.+.+..++...+++.+..+.+.+.++.++.+..
T Consensus       239 ~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~-----f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~l  313 (463)
T KOG2816|consen  239 DRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAK-----FGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISL  313 (463)
T ss_pred             CccchHHHHHHHHHHHHHhcCceeEEEEEEeee-----cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhH
Confidence            44444444444333333222111 234444444     899999999999999999999998888899999999998877


Q ss_pred             HHHhhhhc
Q 017429          360 AGVNFEHS  367 (371)
Q Consensus       360 ~~~~~~~~  367 (371)
                      |+..-.++
T Consensus       314 Gl~~~~~~  321 (463)
T KOG2816|consen  314 GLLSEFLQ  321 (463)
T ss_pred             HHHHHHHH
Confidence            77665544

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.61  E-value=3.2e-14  Score=128.33  Aligned_cols=295  Identities=17%  Similarity=0.166  Sum_probs=201.5

Q ss_pred             CCChhHHHHHHHHHHHhhcccccchhhHH-HHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhh----hcCC
Q 017429           37 GLPITELFSIWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD----RYGR  111 (371)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~Gr  111 (371)
                      +.+.+..+.-.+..+...........++. .+.+.+|++...      +|.+..+.=+--++..|+.|.++|    |+||
T Consensus         8 kLs~~eki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~------aG~iflv~RiiDAi~DP~~G~i~D~t~~r~Gr   81 (467)
T COG2211           8 KLSLKEKIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAAL------AGTIFLVARIIDAITDPIMGFIVDRTRSRWGR   81 (467)
T ss_pred             cccHHHHHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHH------HHHHHHHHHHHHHHhcchheeeeccccccccc
Confidence            34445555555555555555555555565 667788999988      888888888888999999999999    4786


Q ss_pred             -chHHHHHHHHHHHHHHHHHhHH------HHHHHHHHHHHHhhhccchhH-HHHHHhhhcc-ccchhhhhHhhhhhhhhH
Q 017429          112 -KPVIIMGTASVVIFNTLFGLSV------NFWMAVLTRFLLGSLNGLLGP-IKAYACEIFR-EEHQALGLSTVSTAWGIG  182 (371)
Q Consensus       112 -r~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~r~l~G~~~~~~~~-~~~~~~~~~~-~~~r~~~~~~~~~~~~~g  182 (371)
                       |+.++.+.+..++...++-.++      +....++...+.+++...+.. -.++.+|+.+ +++|.+..+.-+.+..+|
T Consensus        82 fRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g  161 (467)
T COG2211          82 FRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLG  161 (467)
T ss_pred             ccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHH
Confidence             4556677788888887777655      334555667788887666555 4888888875 788999999999999998


Q ss_pred             HhHHHhhhhhhcCcCCCCCCcccccccccCccchhHHHHHHHHHHHHHHH-HhhccccccCCCCCCccchhhhhhhhhhh
Q 017429          183 LIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPETLHRHNDDDDSCDVSYDALESAS  261 (371)
Q Consensus       183 ~~~g~~i~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~  261 (371)
                      ..+...+.+.+....++.+.         ..+|+....+.+++.++..+. ++-.+|...+....++..           
T Consensus       162 ~~l~~~~~~plv~~~g~~~~---------~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~~-----------  221 (467)
T COG2211         162 GLLVAVLFPPLVKLFGGGDK---------ALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKTGV-----------  221 (467)
T ss_pred             HHHHHHHHHHHHHHhCCCcc---------hhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCcccc-----------
Confidence            87776666666553322111         335666556666665555443 445566554222111100           


Q ss_pred             hhhhhhcccCCccccccccccchHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHH
Q 017429          262 AEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQL  341 (371)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~  341 (371)
                            +.+..+.....++|++++..++.+.+.........+...+|.+..     +|.+.......+.....+.+++. 
T Consensus       222 ------~~~~~~~~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~-----lg~~~l~~~~~~~~~~~~~l~~~-  289 (467)
T COG2211         222 ------KLKLKDSFLLIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYV-----LGDPELFAYLLLLASGAGLLIGL-  289 (467)
T ss_pred             ------cccHHHHHHHHHccchHHHHHHHHHHHHHHHHHHhhhhheeEEEE-----cCChHHHHHHHHHHHHHHHHHHH-
Confidence                  111122344678999999888877777777777777777777665     77777777777776666666655 


Q ss_pred             HHHHHHHHHhchhHHHHHHHHhhhhccc
Q 017429          342 SLYPFLERILGPIMVARIAGVNFEHSVA  369 (371)
Q Consensus       342 ~~~~~l~~r~~~~~~~~~~~~~~~~~~~  369 (371)
                      ++.+++.+|+|+|++...+.++.+++.+
T Consensus       290 ~~~p~L~~~~gkk~~~~~~~~~~~i~~~  317 (467)
T COG2211         290 ILWPRLVKKFGKKKLFLIGLLLLAVGYL  317 (467)
T ss_pred             HhHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence            5889999999999999999888776543

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.61  E-value=1.8e-14  Score=132.62  Aligned_cols=135  Identities=21%  Similarity=0.281  Sum_probs=114.2

Q ss_pred             cccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHHhHHH
Q 017429           55 LPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVN  134 (371)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~  134 (371)
                      ..........|.+.++.|.+..+      .+...+...++..++.++.|+++||+|||+.+..+.+..+++.+.....++
T Consensus       234 ~~~~~~~~~~p~~~~~~g~s~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~  307 (406)
T PRK11551        234 IVLYFLLNWLPSLLVGQGLSRSQ------AGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPS  307 (406)
T ss_pred             HHHHHHHHHHHHHHHhCCCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            33344455678888888999888      899999999999999999999999999999998877777777666666777


Q ss_pred             HHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcC
Q 017429          135 FWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (371)
Q Consensus       135 ~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~  195 (371)
                      .+.+.+..++.|++.+...+. .++..|.+|+++|++++++.+....+|..+||.++|.+.+
T Consensus       308 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~  369 (406)
T PRK11551        308 FAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLA  369 (406)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhc
Confidence            777777778888876555554 8899999999999999999999999999999999999987

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.61  E-value=7.4e-15  Score=113.74  Aligned_cols=135  Identities=33%  Similarity=0.577  Sum_probs=113.1

Q ss_pred             HHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhccchhHH-HHHHhhhcccc
Q 017429           88 GSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREE  166 (371)
Q Consensus        88 ~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~  166 (371)
                      .+.+.++..+++++.|++.||+|||+.+..+.....++.+.....++.+.+.+.+++.|++.+...+. ..++.|.+|++
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   83 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE   83 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence            34567788899999999999999999999999999998888888889999999999999988877775 89999999999


Q ss_pred             chhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCCCCcccccccccCccchhHHHHHHHHHHHHHHH-Hhhccc
Q 017429          167 HQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPE  238 (371)
Q Consensus       167 ~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e  238 (371)
                      +|++..++.+....+|..++|.+++.+.+                ..+|+..+.+.++..++..+. .+..||
T Consensus        84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T TIGR00880        84 ERGVALGLMSAGIALGPLLGPPLGGVLAQ----------------FLGWRAPFLFLAILALAAFILLAFLLPE  140 (141)
T ss_pred             hhhHHHHHHHHhHHHHHHHhHHhHHHHhc----------------ccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            99999999999999999999999999987                555666666666555554443 344444

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.60  E-value=3.4e-14  Score=130.47  Aligned_cols=161  Identities=19%  Similarity=0.167  Sum_probs=128.0

Q ss_pred             cccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHHhHHHHH
Q 017429           57 ISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFW  136 (371)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~  136 (371)
                      ........+.+.++.|.+  +      .++..+.+.++..++.++.|++.||+|||+.+..+.++.+++.++....++.+
T Consensus       232 ~~~~~~~~~~~~~~~~~~--~------~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (399)
T PRK05122        232 FGTIATFITLYYAARGWD--G------AALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPW  303 (399)
T ss_pred             HHHHHHHHHHHHHHcccc--c------chHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHH
Confidence            334445566555665652  3      55667788888899999999999999999999998888888888877788888


Q ss_pred             HHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCCCCcccccccccCccc
Q 017429          137 MAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPY  215 (371)
Q Consensus       137 ~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~~~~~g~~~~~~~~~~  215 (371)
                      .+++..++.|++.+...+. .....|..|+++|+++.++++....+|..++|.+.|.+.+                .++|
T Consensus       304 ~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~----------------~~g~  367 (399)
T PRK05122        304 MALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVAS----------------WFGY  367 (399)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HcCH
Confidence            8888899999988776665 7778899999999999999999999999999999999987                5566


Q ss_pred             hhHHHHHHHHHHHHHHHHhhcccccc
Q 017429          216 FLPCLCISLFAFGVTIAAFWLPETLH  241 (371)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~e~~~  241 (371)
                      +..+...+++.++.++..+.++++++
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (399)
T PRK05122        368 PSIFLAAALAALLGLALTWLLYRRAP  393 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccc
Confidence            77777777777766666566655443

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.60  E-value=1.7e-14  Score=131.02  Aligned_cols=156  Identities=13%  Similarity=0.042  Sum_probs=121.9

Q ss_pred             HHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHH
Q 017429           51 LCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFG  130 (371)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~  130 (371)
                      +.............+.+.++++.++.+      .+...+...++..++.++.|+++||+|||+.+.++.++.+++.++..
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~  288 (377)
T TIGR00890       215 FLNAVSGLLLIGLYKPYGQSLGLSDGF------LVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAML  288 (377)
T ss_pred             HHHhHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence            333333333344556667888888877      88999999999999999999999999999999999888888887776


Q ss_pred             hHHHH--HHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCCCCccccc
Q 017429          131 LSVNF--WMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSE  207 (371)
Q Consensus       131 ~~~~~--~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~~~~~g~~  207 (371)
                      +.++.  ..++...++.|++.+...+. ..++.|.+|+++|+++.++.+....+|..++|.+.+.+.+            
T Consensus       289 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~------------  356 (377)
T TIGR00890       289 FIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALT------------  356 (377)
T ss_pred             HcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHh------------
Confidence            65532  33445667778877666654 8899999999999999999999999999999999999988            


Q ss_pred             ccccCccchhHHHHHHHHHHH
Q 017429          208 SLFGKFPYFLPCLCISLFAFG  228 (371)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~  228 (371)
                          ..+|+..+.+.+++.++
T Consensus       357 ----~~g~~~~f~~~~~~~~~  373 (377)
T TIGR00890       357 ----EIGFEYTFIVTGAFALT  373 (377)
T ss_pred             ----hhchhhHHHHHHHHHHH
Confidence                55566666666555444

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.58  E-value=7.1e-14  Score=127.49  Aligned_cols=148  Identities=12%  Similarity=0.064  Sum_probs=128.8

Q ss_pred             hHHHHHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHH
Q 017429           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (371)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~  120 (371)
                      +.++...+..++............|.+.++.|.++.+      .|+..++..++..++.++.+++.||+|+|+.+.++.+
T Consensus       205 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~g~s~~~------~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~  278 (382)
T TIGR00902       205 PMNLRFLAAVCLIQGAHAAYYGFSAIYWQAAGISASA------TGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAI  278 (382)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHhH------HHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHH
Confidence            4445445555555566666677788777889999988      9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhh-hhhhhHHhHHHhhhhhhcC
Q 017429          121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVS-TAWGIGLIIGPALGGFLAQ  195 (371)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~i~~~l~~  195 (371)
                      ...+.....+++++.+.+++..++.|++.+...+. ..++.+. |+++|++..++++ ...++|..+||.++|.+.+
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~  354 (382)
T TIGR00902       279 ACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYP  354 (382)
T ss_pred             HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998888875 8899988 9999999999985 5778999999999999998

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.57  E-value=1.5e-14  Score=133.68  Aligned_cols=139  Identities=18%  Similarity=0.141  Sum_probs=114.8

Q ss_pred             hHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhccchhHH-HHHHhhh
Q 017429           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEI  162 (371)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~  162 (371)
                      .|++.++..++..++.+++|++.||+|||+.+..+.++.+++.++.+++++++.+++.+++.|++.+...+. ..++.|.
T Consensus       264 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~  343 (420)
T PRK09528        264 FGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLN  343 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            889999999999999999999999999999999999988888888888889999999999999887766554 7899999


Q ss_pred             ccccchhhhhHh-hhhhhhhHHhHHHhhhhhhcCcCCCCCCcccccccccCccchhHHHHHHHHHHHHHH-HHhhccc
Q 017429          163 FREEHQALGLST-VSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPE  238 (371)
Q Consensus       163 ~~~~~r~~~~~~-~~~~~~~g~~~g~~i~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e  238 (371)
                      +|++.|++..+. ++....+|..++|.+.|++.+                .++|+..+...+++.++..+ ..+.+++
T Consensus       344 ~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~----------------~~G~~~~f~~~~~~~~i~~~~~~~~~~~  405 (420)
T PRK09528        344 FDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYD----------------SIGFQGTYLILGGIVLLFTLISVFTLSG  405 (420)
T ss_pred             cCccceeeeeeehHHHHHHHHHHHHHHHHHHHHH----------------hhCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999887665 567788999999999999998                55666666776666555443 3444444

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.56  E-value=1.2e-13  Score=124.24  Aligned_cols=163  Identities=22%  Similarity=0.314  Sum_probs=137.8

Q ss_pred             HHhhcccccchhhHHHHHHhh-ccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCch-HHHHHHHHHHHHHHH
Q 017429           51 LCTALPISSLFPFLYFMIKDF-QIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKP-VIIMGTASVVIFNTL  128 (371)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~-~l~~~~~~~~~~~~~  128 (371)
                      +.............|.+.++. |.++.+      .++..+...++..++.++.|++.||+|||+ .+..+.++..++.+.
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  258 (352)
T cd06174         185 FLLSFGYYGLLTYLPLYLQEVLGLSAAE------AGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLL  258 (352)
T ss_pred             HHHHhHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            333444455566667666654 888888      999999999999999999999999999999 999999999999999


Q ss_pred             HHhHHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCCCCccccc
Q 017429          129 FGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSE  207 (371)
Q Consensus       129 ~~~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~~~~~g~~  207 (371)
                      ....++.+.+++..++.|++.+...+. ..++.|..|+++|++.+++.+....+|..++|.+.+.+.+            
T Consensus       259 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~------------  326 (352)
T cd06174         259 LALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLD------------  326 (352)
T ss_pred             HHHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------------
Confidence            888888889999999999998887775 9999999999999999999999999999999999999998            


Q ss_pred             ccccCccchhHHHHHHHHHHHHHHHHhh
Q 017429          208 SLFGKFPYFLPCLCISLFAFGVTIAAFW  235 (371)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (371)
                          ..+|+..+.+.+++.++..+..++
T Consensus       327 ----~~~~~~~~~~~~~~~~i~~i~~~~  350 (352)
T cd06174         327 ----TGGYGGVFLILAALALLAALLLLL  350 (352)
T ss_pred             ----ccCcchHHHHHHHHHHHHHHHhee
Confidence                556666667777776666555443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.56  E-value=1.6e-13  Score=124.86  Aligned_cols=154  Identities=15%  Similarity=0.293  Sum_probs=122.2

Q ss_pred             hhHHH-HHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 017429           62 PFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVL  140 (371)
Q Consensus        62 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~  140 (371)
                      ...|. +.+++|.++.+      .+++.+.......++.++.|++.||+|||+.+.++.++..+........++.+.+++
T Consensus       220 ~~~~~~~~~~~g~~~~~------~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (375)
T TIGR00899       220 INMPLLIIHELGLPDKL------AGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLM  293 (375)
T ss_pred             hhhHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34454 45678988888      888887777777888999999999999999998887776666666666778888888


Q ss_pred             HHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCCCCcccccccccCccchhHH
Q 017429          141 TRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPC  219 (371)
Q Consensus       141 ~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~  219 (371)
                      .+++.|++.+...+. ..++.|..|+ +|++++++++....+|..++|.++|.+.+                .++|+..+
T Consensus       294 ~~~~~g~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~----------------~~g~~~~~  356 (375)
T TIGR00899       294 LQLLNAIFIGILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAE----------------RWSYHAVY  356 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH----------------hccchhHH
Confidence            888999887776665 7888898876 46799999999999999999999999988                55666667


Q ss_pred             HHHHHHHHHHHHHHhhccc
Q 017429          220 LCISLFAFGVTIAAFWLPE  238 (371)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~e  238 (371)
                      ...+++.++..+..++++|
T Consensus       357 ~~~~~~~~~~~~~~~~~~~  375 (375)
T TIGR00899       357 WFAIVMLIVALFCLLLIKD  375 (375)
T ss_pred             HHHHHHHHHHHHHHheecC
Confidence            7777777766666665554

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.55  E-value=1.3e-13  Score=127.25  Aligned_cols=163  Identities=17%  Similarity=0.119  Sum_probs=130.7

Q ss_pred             chhhHHHHHHh-hccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHHhHHHHHHH
Q 017429           60 LFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMA  138 (371)
Q Consensus        60 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~  138 (371)
                      .....|.+.++ +|.+..+      .+++.+...++..++.++.+++.||.++++.+..+.++.+++.++..+.++.+..
T Consensus       242 ~~~~~p~~~~~~~g~~~~~------~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  315 (417)
T PRK10489        242 VRVLYPALADEVWQMGAAQ------IGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILA  315 (417)
T ss_pred             HHHhhHHHHHhccCCChhH------hHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHH
Confidence            44566766666 8998888      9999999999999999999999999888888888888888888777777888777


Q ss_pred             HHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCCCCcccccccccCccchh
Q 017429          139 VLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFL  217 (371)
Q Consensus       139 ~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~~~~~g~~~~~~~~~~~~  217 (371)
                      .+..++.|++.+...+. .+++.|..|++.|++++++++....+|..+||.+.|.+.+                .++++.
T Consensus       316 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~----------------~~g~~~  379 (417)
T PRK10489        316 VLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGA----------------MMTPVA  379 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHH----------------Hhchhh
Confidence            78888889887777665 7899999999999999999999999999999999999998                445555


Q ss_pred             HHHHHHHHHH-HHHHHHhhccccccCCC
Q 017429          218 PCLCISLFAF-GVTIAAFWLPETLHRHN  244 (371)
Q Consensus       218 ~~~~~~~~~~-~~~~~~~~~~e~~~~~~  244 (371)
                      .+...+...+ +.++.....||.++..+
T Consensus       380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (417)
T PRK10489        380 SASASGFGLLIIGVLLLLVLGELRRFRQ  407 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccccccc
Confidence            5554444433 34555666677665433

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.54  E-value=5.9e-14  Score=130.80  Aligned_cols=148  Identities=17%  Similarity=0.148  Sum_probs=116.6

Q ss_pred             HHHHHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhc--CCchHHHH--
Q 017429           42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY--GRKPVIIM--  117 (371)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--Grr~~l~~--  117 (371)
                      .++......++..........++|.+.+++|.+..+      .+++.++..++..++.++.|+++||.  ++|+...+  
T Consensus       242 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~  315 (455)
T TIGR00892       242 GFLVYLSGNVIMFLGFFAPIIFLVPYAKDKGVDEYE------AAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSF  315 (455)
T ss_pred             hHHHHHHHHHHHHHHccchHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHH
Confidence            344444444555555555666778777888999888      99999999999999999999999984  33433333  


Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcC
Q 017429          118 GTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (371)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~  195 (371)
                      +.+..+++.++....++++.+++.+++.|++.+...+. .+++.|.+|++++++.+++++....+|..+||.++|.+.+
T Consensus       316 ~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~  394 (455)
T TIGR00892       316 ALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVD  394 (455)
T ss_pred             HHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeeh
Confidence            33444455555666778888889999999998887775 8999999999999999999999999999999999999988

>PRK12382 putative transporter; Provisional

Probab=99.53  E-value=2.9e-13  Score=123.96  Aligned_cols=156  Identities=21%  Similarity=0.212  Sum_probs=124.7

Q ss_pred             cccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHHhHHH
Q 017429           55 LPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVN  134 (371)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~  134 (371)
                      ..........|.+.++.+.+  +      .++..+.+.++..+++++.|++.||+|+|+.+..+..+.+++.++..+.++
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~--~------~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~  301 (392)
T PRK12382        230 VGFAVIGTFVSLYFASKGWA--M------AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPT  301 (392)
T ss_pred             HHHhHHHHHHHHHHHhcCCc--h------hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHccc
Confidence            33344455666666666654  3      456667778888899999999999999999999998888888888777788


Q ss_pred             HHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCCCCcccccccccCc
Q 017429          135 FWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKF  213 (371)
Q Consensus       135 ~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~~~~~g~~~~~~~~  213 (371)
                      .+.+++..++.|++.+...+. ...+.|.+|+++|+++.++.+....+|..++|.+.+.+.+                ..
T Consensus       302 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~----------------~~  365 (392)
T PRK12382        302 AWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLAT----------------SF  365 (392)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------Hh
Confidence            888888889999988777665 7888999999999999999999999999999999999998                55


Q ss_pred             cchhHHHHHHHHHHHHHHHHh
Q 017429          214 PYFLPCLCISLFAFGVTIAAF  234 (371)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~  234 (371)
                      +|+..+.+.+++.++..+..+
T Consensus       366 g~~~~~~~~~~~~~~~~~~~~  386 (392)
T PRK12382        366 GYPSVFLAGAISAVLGIIVTI  386 (392)
T ss_pred             CchHHHHHHHHHHHHHHHHHH
Confidence            666666777766666555443

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.53  E-value=2e-13  Score=125.66  Aligned_cols=159  Identities=18%  Similarity=0.232  Sum_probs=124.3

Q ss_pred             ccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHHhHHHHHH
Q 017429           58 SSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWM  137 (371)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~  137 (371)
                      ....+..+.+.++.+.+..+  .....+.+.++..++..++.+..|+++||+|||+.+..+.++..++.+...+.++.+.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (408)
T PRK09874        236 GSIAPILTLYVRELAGNVSN--IAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQ  313 (408)
T ss_pred             HHHHHHHHHHHHHHhccchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHH
Confidence            34455666665554333222  1112456666777888899999999999999999999998888887777777788888


Q ss_pred             HHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCCCCcccccccccCccch
Q 017429          138 AVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYF  216 (371)
Q Consensus       138 ~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~~~~~g~~~~~~~~~~~  216 (371)
                      +++.+++.|++.+...+. .+.+.+..|+++|++.+++.+....+|..+||.++|.+.+                .++|+
T Consensus       314 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~----------------~~g~~  377 (408)
T PRK09874        314 LGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISA----------------NYGFR  377 (408)
T ss_pred             HHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHh----------------hcchh
Confidence            888999999998887775 8888899999999999999999999999999999999988                55677


Q ss_pred             hHHHHHHHHHHHHHHHHh
Q 017429          217 LPCLCISLFAFGVTIAAF  234 (371)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~  234 (371)
                      ..+++.+++.++..+..+
T Consensus       378 ~~f~~~~~~~l~~~~~~~  395 (408)
T PRK09874        378 AVFLVTAGVVLFNAVYSW  395 (408)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            777777777666555443

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.53  E-value=7e-13  Score=121.39  Aligned_cols=178  Identities=12%  Similarity=0.075  Sum_probs=126.3

Q ss_pred             HHHHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHH
Q 017429           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV  122 (371)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~  122 (371)
                      .+.+.+..++............|.+.+++|.+..+      .+...+.+.++..++.++.|++.||+|||+.+..+..+.
T Consensus       207 ~~~l~~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~------ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~  280 (393)
T PRK09705        207 AWTLGVYFGLINGGYASLIAWLPAFYIEIGASAQY------SGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQ  280 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhh------hhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence            33333444444445555667778777788999888      999999999999999999999999999999998887777


Q ss_pred             HHHHHHHHh-HHHHHHHHHHHHHHhhhccchhHH-HHHHhhhcc-ccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCC
Q 017429          123 VIFNTLFGL-SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFR-EEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK  199 (371)
Q Consensus       123 ~~~~~~~~~-~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~  199 (371)
                      .++..+... .++...+  .-++.|++.+...+. .....+..+ +++|++..++.+....++..++|.+.|++.+..  
T Consensus       281 ~~~~~~~~~~~~~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~--  356 (393)
T PRK09705        281 LVGFCGFIWLPLQLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSIS--  356 (393)
T ss_pred             HHHHHHHHHccchHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence            776655443 2222222  224567776666564 556667764 678999999999999999999999999999831  


Q ss_pred             CCCcccccccccCccchhHHHHHHHHHHHHHH-HHhhccccccCC
Q 017429          200 YPNLFSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRH  243 (371)
Q Consensus       200 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~  243 (371)
                                   .+|...+++.+++.++..+ ...+.||++.++
T Consensus       357 -------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (393)
T PRK09705        357 -------------GNYLMDWAFHALCVVGLMIITLRFAPARFPQL  388 (393)
T ss_pred             -------------CCchHHHHHHHHHHHHHHHHHHHhccccccch
Confidence                         1245555665555555443 456677776543

>TIGR00897 2A0118 polyol permease family

Probab=99.53  E-value=3.2e-13  Score=124.06  Aligned_cols=171  Identities=15%  Similarity=0.234  Sum_probs=124.4

Q ss_pred             HHHHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHH-HHHHH
Q 017429           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII-MGTAS  121 (371)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~-~~~~~  121 (371)
                      ++...+..++............|.+.+++|.+..+      .+.+.+...++..++.++.|+++||+|||+.+. .+.+.
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~------~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~  297 (402)
T TIGR00897       224 VLLGGMVRIINTIGLFGFAVFLPMFVAELGFSTSE------WLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVG  297 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhH------HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Confidence            34334444444444555566788888889999888      888888999999999999999999999988764 33333


Q ss_pred             HHHHHHHHHh-----HHHHHHHHHHHHHHhhhccchhHHHHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCc
Q 017429          122 VVIFNTLFGL-----SVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP  196 (371)
Q Consensus       122 ~~~~~~~~~~-----~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~  196 (371)
                      .++..+....     .++.+.+++..++.|++.+...+....+.|..| ++|++++|+.+....+|..++|.+++.+.+ 
T Consensus       298 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~-  375 (402)
T TIGR00897       298 CGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGYVPLAAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIG-  375 (402)
T ss_pred             HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence            3333333222     235666777788888876665555566677654 589999999999999999999999999998 


Q ss_pred             CCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhhc
Q 017429          197 AEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL  236 (371)
Q Consensus       197 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (371)
                                     .++++..+++.+++.++..+...++
T Consensus       376 ---------------~~g~~~~~~~~a~~~~i~~~~~~~~  400 (402)
T TIGR00897       376 ---------------FFGAIGVVWIFAALYVVSAFLTAFI  400 (402)
T ss_pred             ---------------hcchHHHHHHHHHHHHHHHHHHHHh
Confidence                           5666777777777766665554444

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.53  E-value=1.7e-12  Score=116.37  Aligned_cols=176  Identities=17%  Similarity=0.214  Sum_probs=141.5

Q ss_pred             hHHHHHHHHHHHhhcccccchhhHH-HHHHhhc----cccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhc-CCchH
Q 017429           41 TELFSIWIIVLCTALPISSLFPFLY-FMIKDFQ----IAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-GRKPV  114 (371)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-Grr~~  114 (371)
                      |.++.++..-+..-++++.....+- ++..+++    .++++      ..-+.++|..-.-+..+++|+++||+ |+|+.
T Consensus        21 r~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~------A~~l~~~y~slVY~t~i~GG~laDr~LG~~~t   94 (498)
T COG3104          21 RGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETH------ATGLFSAYGSLVYLTPIIGGWLADRVLGTRRT   94 (498)
T ss_pred             chHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHh------hHHHHHHHHHHHHHHHHHHHHHHHHhcchhHH
Confidence            4566677778888888777766554 5666666    87777      55566666555557889999999996 99999


Q ss_pred             HHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHhhhccchhHH-HHHHhhhcccc--chhhhhHhhhhhhhhHHhHHHhh
Q 017429          115 IIMGTASVVIFNTLFGLSV--NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREE--HQALGLSTVSTAWGIGLIIGPAL  189 (371)
Q Consensus       115 l~~~~~~~~~~~~~~~~~~--~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~g~~i  189 (371)
                      ++.|.++..++.++.+.+.  +...++++-.+.++|.|.+-+. ..++.|++|++  +|-.++++++.+.++|+.++|.+
T Consensus        95 I~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i  174 (498)
T COG3104          95 IVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPII  174 (498)
T ss_pred             HHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHH
Confidence            9999999999999999874  7788889988899999999884 99999999854  37778899999999999999999


Q ss_pred             hhhhcCcCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhhccc
Q 017429          190 GGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPE  238 (371)
Q Consensus       190 ~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  238 (371)
                      .+++.+                +++|...|...++-..+.++.....+.
T Consensus       175 ~~~~~~----------------~~g~~~gF~~aavGm~~gl~~f~~~~r  207 (498)
T COG3104         175 TGLLAI----------------NYGWHVGFGLAAVGMIIGLVIFLLGRR  207 (498)
T ss_pred             HHHHHH----------------hhCHHHHHHHHHHHHHHHHHHHHHccc
Confidence            999998                777777777777766666666555543

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.52  E-value=4.6e-13  Score=122.18  Aligned_cols=154  Identities=19%  Similarity=0.262  Sum_probs=117.1

Q ss_pred             ccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHHhHHHHHH
Q 017429           58 SSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWM  137 (371)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~  137 (371)
                      .....++|.+.++.|.+..+      .++..+...++..+++++.|++.||+|+|+++..+.....++.+...  . ...
T Consensus       217 ~~~~~~lp~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~  287 (381)
T PRK03633        217 GSLYGLMPLYLNHQGMSDAS------IGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAA  287 (381)
T ss_pred             HHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHH
Confidence            33445678787888888888      89989999999999999999999999999999888777777655443  2 223


Q ss_pred             HHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCCCCcccccccccCccch
Q 017429          138 AVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYF  216 (371)
Q Consensus       138 ~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~~~~~g~~~~~~~~~~~  216 (371)
                      .....++.|++.+...|. .+.+.|..|+++++...+..+.+.++|..+||.++|.+.+                .++++
T Consensus       288 ~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~----------------~~g~~  351 (381)
T PRK03633        288 MAPALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQ----------------NYSDN  351 (381)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HhCcc
Confidence            345667777765555564 8888999998888888888888899999999999999998                44556


Q ss_pred             hHHHHHHHHHHHHHHHHhhc
Q 017429          217 LPCLCISLFAFGVTIAAFWL  236 (371)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~  236 (371)
                      ..+.+.+.+.++..+..++.
T Consensus       352 ~~f~~~~~~~l~~~~~~~~~  371 (381)
T PRK03633        352 LLFIMIASVSFIYLLMLLRK  371 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHhc
Confidence            66666666665554444433

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.52  E-value=1.7e-12  Score=114.20  Aligned_cols=261  Identities=16%  Similarity=0.083  Sum_probs=170.5

Q ss_pred             HHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcC-----CchHHHH-HHHHHHHHHHHHHhH-----H-
Q 017429           66 FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYG-----RKPVIIM-GTASVVIFNTLFGLS-----V-  133 (371)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G-----rr~~l~~-~~~~~~~~~~~~~~~-----~-  133 (371)
                      .+..|++++..-      .+...+...+.. ...+.+|+.+|+.+     ||..+++ |.+..+.+..+.+++     . 
T Consensus         5 VMIvEL~vpA~l------v~~lval~~~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~   77 (403)
T PF03209_consen    5 VMIVELGVPAWL------VALLVALHYLVA-PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAES   77 (403)
T ss_pred             hHHHHhccHHHH------HHHHHHHHHHHH-HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccc
Confidence            355678888776      787777777664 56899999999998     8866655 566655555544432     2 


Q ss_pred             -------H-HH--HHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCCCC
Q 017429          134 -------N-FW--MAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPN  202 (371)
Q Consensus       134 -------~-~~--~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~~~  202 (371)
                             . .+  ...+...+.|+|.+...+. .++++|..|+|+|+++.++.....-+|.+++..+.+.+.+..     
T Consensus        78 ~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~-----  152 (403)
T PF03209_consen   78 GQQSSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPF-----  152 (403)
T ss_pred             ccccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHcccc-----
Confidence                   1 12  2334456678877776665 999999999999999999999999999999999999998831     


Q ss_pred             cccccccccCccchhHHHHHHHH--HHHHHHHHhhccccccCCCCCCccchhhhhhhhhhhhhhhhhcccCCcccccccc
Q 017429          203 LFSSESLFGKFPYFLPCLCISLF--AFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLK  280 (371)
Q Consensus       203 ~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (371)
                                ..-+..-.+..+.  .+...+...+-.|.+.....+.++++                +......++++..
T Consensus       153 ----------s~~rL~~v~~~~a~i~~~l~~ia~wg~E~r~~~~~~~~~~~----------------~~~f~~a~~~~~~  206 (403)
T PF03209_consen  153 ----------SPERLIQVIQGVALIALLLNLIALWGQEPRRSRRAAAAERP----------------RPPFREAWRQVWA  206 (403)
T ss_pred             ----------CHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccCCCCC----------------CccHHHHHHHHHh
Confidence                      1112222222222  22222223333343332222110000                1112234566677


Q ss_pred             ccchHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHH
Q 017429          281 NWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIA  360 (371)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~  360 (371)
                      +|+..+..+..++.......-...+-.|.-+.     +|++..+...+....+.+..++....+..+.+|.++++....|
T Consensus       207 ~~~a~~f~~fl~l~t~a~~~QD~iLEPygg~V-----fgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G  281 (403)
T PF03209_consen  207 SPQARRFFVFLFLGTLAFFMQDVILEPYGGEV-----FGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALG  281 (403)
T ss_pred             CCChhHHHHHHHHHHHHHHhhHHHcCCchhHH-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence            78777766666665555555554544454444     9999999999999999999888866666666688888888888


Q ss_pred             HHhhhhccc
Q 017429          361 GVNFEHSVA  369 (371)
Q Consensus       361 ~~~~~~~~~  369 (371)
                      +...+++..
T Consensus       282 ~~~~~~~f~  290 (403)
T PF03209_consen  282 CLLGALAFA  290 (403)
T ss_pred             HHHHHHHHH
Confidence            877766654

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.52  E-value=4.7e-13  Score=122.34  Aligned_cols=169  Identities=12%  Similarity=0.073  Sum_probs=114.7

Q ss_pred             hHHHHHHHHHHHhhcccccchhhHHHHH-HhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchH--HHH
Q 017429           41 TELFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPV--IIM  117 (371)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~--l~~  117 (371)
                      +.++...+..++............|.+. +++|.+..+      .++..+...++..++.++.|+++||+|||+.  ...
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  288 (399)
T TIGR00893       215 RRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILE------AGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFA  288 (399)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHH------hhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHH
Confidence            3444455555555666666667777554 567888888      8999999999999999999999999999861  111


Q ss_pred             ------HHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhccchhH-HHHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhh
Q 017429          118 ------GTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG  190 (371)
Q Consensus       118 ------~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~  190 (371)
                            +.++..+........++.+..+....+.+++.+ ..+ ..+++.|.+|+++|+++.++.+....+|..++|.+.
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~  367 (399)
T TIGR00893       289 RKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVI  367 (399)
T ss_pred             HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHh
Confidence                  111111111111122344444444444444555 455 499999999999999999999999999999999999


Q ss_pred             hhhcCcCCCCCCcccccccccCcc-chhHHHHHHHHHHHHHHH
Q 017429          191 GFLAQPAEKYPNLFSSESLFGKFP-YFLPCLCISLFAFGVTIA  232 (371)
Q Consensus       191 ~~l~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~  232 (371)
                      +.+.+                ..+ |...+.+.++..++..+.
T Consensus       368 g~l~~----------------~~g~~~~~~~~~~~~~~~~~~~  394 (399)
T TIGR00893       368 GAIAA----------------TTGSFAGALMVVAALALIGALS  394 (399)
T ss_pred             hhhcc----------------CCCchhHHHHHHHHHHHHHHHH
Confidence            99988                333 555556665555554443

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.51  E-value=5.2e-12  Score=116.97  Aligned_cols=258  Identities=17%  Similarity=0.134  Sum_probs=175.6

Q ss_pred             hhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHH-HHHHHHHHHHHHHhH-HH-HHHHHHHHHHHhhhccchhHH-H
Q 017429           81 GSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM-GTASVVIFNTLFGLS-VN-FWMAVLTRFLLGSLNGLLGPI-K  156 (371)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~-~~~~~~~~~~~~~~~-~~-~~~~~~~r~l~G~~~~~~~~~-~  156 (371)
                      +.+.++..++..+..++..|+.|.++|+-|+||.++. ..++..+.+.++.+. ++ ++...+..++.-++.+...+. .
T Consensus        69 ~s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyn  148 (477)
T PF11700_consen   69 SSLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYN  148 (477)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3446788889999999999999999999987666554 455555566655553 33 333333334444565555665 9


Q ss_pred             HHHhhhccccch--------------------------hhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCCCCcccccccc
Q 017429          157 AYACEIFREEHQ--------------------------ALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLF  210 (371)
Q Consensus       157 ~~~~~~~~~~~r--------------------------~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~~~~~g~~~~~  210 (371)
                      +++.|+.+++.+                          ++..+.-.....+|+++.-.+.-.+....++.        .=
T Consensus       149 a~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~--------~~  220 (477)
T PF11700_consen  149 AYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGST--------AS  220 (477)
T ss_pred             HHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCc--------cc
Confidence            999999998888                          88888877777788877666655554322111        00


Q ss_pred             cCccchhHHHHHHHHHHHH-HHHHhhccccccCCCCCCccchhhhhhhhhhhhhhhhhcccCCccccccccccchHHHHH
Q 017429          211 GKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSII  289 (371)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (371)
                      ..++.|..+.+.++..++. +...+++||.++....++... .....           -++..+..++..+.|.....++
T Consensus       221 ~~~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~-~~~~g-----------~~~l~~t~k~~~~~~~~~~fLi  288 (477)
T PF11700_consen  221 NTWAIRVAFLIVALWWLVFSIPLFLWLPDRPGPRPLPSGSS-YLRFG-----------FKRLWRTFKEIRKLRQLFLFLI  288 (477)
T ss_pred             cchhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcchh-HHHHH-----------HHHHHHHHHHHHhChHHHHHHH
Confidence            0234566666666665544 445677888775322111110 00000           0011234556677888889999


Q ss_pred             HHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhchh--HHHHHHHHhh
Q 017429          290 VYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPI--MVARIAGVNF  364 (371)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~  364 (371)
                      .++++.-...+...+...|....     +|++..+...+.....+.+++++ ++.+++.||+|.|  +.+..+.++.
T Consensus       289 a~~l~~dg~~ti~~~~~i~a~~~-----lg~s~~~l~~~~l~~~i~a~~Ga-~~~g~l~~r~g~k~~~~l~~~l~~~  359 (477)
T PF11700_consen  289 AYFLYSDGVNTIISFAGIYATEV-----LGMSTTQLIVFGLVVQIVAIIGA-LLFGWLQDRFGPKTKRTLLISLILW  359 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-----cCcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCchhHHHHHHHHHH
Confidence            99998888888888888888877     89999999999999999999999 4889999999999  7776666554

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.51  E-value=7e-13  Score=125.34  Aligned_cols=130  Identities=20%  Similarity=0.246  Sum_probs=102.6

Q ss_pred             chhhHHHHH-HhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHHhH--HHHH
Q 017429           60 LFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS--VNFW  136 (371)
Q Consensus        60 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~  136 (371)
                      ....+|.+. +++|.+..+      .+++.+...++..++.++.|+++||+|||+++..+.++..+..++....  .+.+
T Consensus       294 ~~~~lp~~l~~~~g~~~~~------~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (496)
T PRK03893        294 IQALLPTYLKTDLGYDPHT------VANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVW  367 (496)
T ss_pred             HHHHHHHHHHhhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHH
Confidence            456678776 588999988      9999999999999999999999999999999888877666655443332  3334


Q ss_pred             HHHHHHHHHhh-hccchhHHHHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcC
Q 017429          137 MAVLTRFLLGS-LNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (371)
Q Consensus       137 ~~~~~r~l~G~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~  195 (371)
                      .+.+..++.+. +.+.......++.|.+|+++|++++++.+....+|..+||.++|.+.+
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~  427 (496)
T PRK03893        368 VLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQ  427 (496)
T ss_pred             HHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhc
Confidence            44444455444 344333347889999999999999999999999999999999999998

>PRK03545 putative arabinose transporter; Provisional

Probab=99.51  E-value=9e-13  Score=120.65  Aligned_cols=149  Identities=13%  Similarity=0.146  Sum_probs=113.7

Q ss_pred             hhHH-HHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHH-HHHHhHHHHHHHH
Q 017429           62 PFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFN-TLFGLSVNFWMAV  139 (371)
Q Consensus        62 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~~~~  139 (371)
                      ...+ .+.+++|.+..+      .+++.+...++..++.++.|+++||+|||+... +..+..++. .+....++.+.++
T Consensus       226 ~~~~~~l~~~~g~s~~~------~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~  298 (390)
T PRK03545        226 SYIEPFVQQVAGLSENF------ATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHLS  298 (390)
T ss_pred             HHHHHHHHHhcCCCccH------HHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHHH
Confidence            3444 445557888888      899999999999999999999999999887544 434333333 3334566777788


Q ss_pred             HHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCCCCcccccccccCccchhH
Q 017429          140 LTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLP  218 (371)
Q Consensus       140 ~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~~~~~g~~~~~~~~~~~~~  218 (371)
                      +..++.|++.+...+. ...+.|..| ++|++++++++....+|..+||.++|.+.+                .++++..
T Consensus       299 ~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~----------------~~g~~~~  361 (390)
T PRK03545        299 VLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSL----------------HLGLSSI  361 (390)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------ccChhHH
Confidence            8888889887666554 777778766 588999999999999999999999999998                6667777


Q ss_pred             HHHHHHHHHHHHHHHh
Q 017429          219 CLCISLFAFGVTIAAF  234 (371)
Q Consensus       219 ~~~~~~~~~~~~~~~~  234 (371)
                      +...+++.+++++...
T Consensus       362 ~~~~~~~~~~~~~~~~  377 (390)
T PRK03545        362 GYVGAALALAALVWSI  377 (390)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            7777777766555433

>PRK03699 putative transporter; Provisional

Probab=99.50  E-value=5.4e-13  Score=122.22  Aligned_cols=174  Identities=11%  Similarity=0.089  Sum_probs=127.6

Q ss_pred             HHHHHHHHHHhhcccccchhhHHHHH-HhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHH
Q 017429           43 LFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (371)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~  121 (371)
                      ++...+..++............|.+. +++|.+..+      .+.+.+.+.++..++.++.|+++||+|||+.+.....+
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~------~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~  280 (394)
T PRK03699        207 VLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLED------AGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGL  280 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH------hhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHH
Confidence            34444444444444455567778666 567999888      99999999999999999999999999999999888777


Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCC
Q 017429          122 VVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY  200 (371)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~  200 (371)
                      .++...+....++...+.+..++.|++.+...+. .++..|..|. ++++..+....+..+|..++|.+.|.+.+     
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~i~p~~~G~l~~-----  354 (394)
T PRK03699        281 ALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTKV-ASPKLVNFILTCGTIGTMLTFVVTSPIVA-----  354 (394)
T ss_pred             HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CCHHHHHHHHHhhhHHHHHHHHHHHHHHH-----
Confidence            7776666666667766667777888876655554 6677777654 46777888888889999999999999998     


Q ss_pred             CCcccccccccCccchhHHHHHHHHHHHHHHHHhhcccc
Q 017429          201 PNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPET  239 (371)
Q Consensus       201 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  239 (371)
                                 ..+++..++..+++.++..+.....++.
T Consensus       355 -----------~~g~~~~~~~~~~~~~~~~~~~~~~~~~  382 (394)
T PRK03699        355 -----------HFGLQAALLTANGLYAVVFVMCILLGFV  382 (394)
T ss_pred             -----------HhCchhhhhhhHHHHHHHHHHHHHHHHH
Confidence                       4445555565555555554444444443

>PRK09952 shikimate transporter; Provisional

Probab=99.49  E-value=9e-13  Score=122.35  Aligned_cols=166  Identities=15%  Similarity=0.156  Sum_probs=114.8

Q ss_pred             hcccccchhhHHHH-HHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHHh-
Q 017429           54 ALPISSLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGL-  131 (371)
Q Consensus        54 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-  131 (371)
                      ....+......|.+ .+++|.+...      ...+.....+...++.++.|+++||+|||+.+..+.++..++.+.... 
T Consensus       263 ~~~~~~~~~~~~~y~~~~~g~s~~~------~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~  336 (438)
T PRK09952        263 LLTMYIVTAFALNYSTQNLGLPREL------FLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMA  336 (438)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH
Confidence            33344445566644 4567877665      555555666677888999999999999999998887766554433322 


Q ss_pred             --H-HHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhh-hhhhhHHhHHHhhhhhhcCcCCCCCCcccc
Q 017429          132 --S-VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVS-TAWGIGLIIGPALGGFLAQPAEKYPNLFSS  206 (371)
Q Consensus       132 --~-~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~i~~~l~~~~~~~~~~~g~  206 (371)
                        . ++.+.+++..++.+++.+...+. +++++|.+|++.|+.+.++.+ .+..+|+.++|.+.+++.+..         
T Consensus       337 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~---------  407 (438)
T PRK09952        337 LEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYF---------  407 (438)
T ss_pred             HHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc---------
Confidence              1 23344444556667776666554 899999999999999888854 445589999999999998721         


Q ss_pred             cccccCccchhHHHHHHHHHHHHHHHHhhcccc
Q 017429          207 ESLFGKFPYFLPCLCISLFAFGVTIAAFWLPET  239 (371)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  239 (371)
                           ..+|..++.+.+++.++..+..+.++|+
T Consensus       408 -----~~~~~~~~~~~~~~~~i~~v~~~~~~~~  435 (438)
T PRK09952        408 -----GGSWHSVAIYLLAGCLISAMTALLMKDN  435 (438)
T ss_pred             -----CCCchHHHHHHHHHHHHHHHHHHHcccc
Confidence                 1235666677777777776666667764

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.48  E-value=1.4e-12  Score=122.33  Aligned_cols=174  Identities=17%  Similarity=0.151  Sum_probs=123.3

Q ss_pred             HHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHH
Q 017429           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (371)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~  124 (371)
                      ...+..+.............|.+.+++|.+..+      .++......++..++.++.|+++||+|||+.+.++.++.++
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~  361 (481)
T TIGR00879       288 GVVLQWFQQFTGINAIMYYSPTIFENAGVSTDH------AFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAI  361 (481)
T ss_pred             HHHHHHHHHHhCCeehHHHHHHHHHHcCCCchH------HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence            334444444444555566778888899998877      88888889999999999999999999999999998888777


Q ss_pred             HHHHHHhH-----H------HHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhh
Q 017429          125 FNTLFGLS-----V------NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGF  192 (371)
Q Consensus       125 ~~~~~~~~-----~------~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~  192 (371)
                      +.++..+.     +      +...+....++.+.......+. ..++.|.+|+++|++++++.+....+|.+++|.+.+.
T Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~  441 (481)
T TIGR00879       362 CLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPT  441 (481)
T ss_pred             HHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            76666521     1      2222333333333322223344 7788999999999999999999999999999999999


Q ss_pred             hcCcCCCCCCcccccccccCccchhHHHHHHHHHHHHHH-HHhhccccc
Q 017429          193 LAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPETL  240 (371)
Q Consensus       193 l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~  240 (371)
                      +.+                ..+|...+++.++++++..+ ..++.||++
T Consensus       442 ~~~----------------~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~  474 (481)
T TIGR00879       442 MLE----------------SIGVGGVFIFFGGLNVLGLIFVYFFLPETK  474 (481)
T ss_pred             HHH----------------hcCccceehhHHHHHHHHHHHHheecccCC
Confidence            887                33344444555555555444 345566654

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.46  E-value=4e-13  Score=122.85  Aligned_cols=147  Identities=20%  Similarity=0.215  Sum_probs=109.6

Q ss_pred             HHHHHHHHHHhhcccccchhhHHHHH-HhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHH
Q 017429           43 LFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (371)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~  121 (371)
                      ++......++............|.+. +++|.+..+      .+.......++..++.++.|+++||+|||+.+.....+
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~  294 (394)
T TIGR00883       221 FLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANS------ALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVL  294 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhH------HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence            34444444444445555566777665 678888888      88889999999999999999999999999988765544


Q ss_pred             HHHHH--HHHHh--HHHHHHHHHHHHHHhhhccchhH-HHHHHhhhccccchhhhhHhh-hhhhhhHHhHHHhhhhhhcC
Q 017429          122 VVIFN--TLFGL--SVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTV-STAWGIGLIIGPALGGFLAQ  195 (371)
Q Consensus       122 ~~~~~--~~~~~--~~~~~~~~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~-~~~~~~g~~~g~~i~~~l~~  195 (371)
                      ..+..  .....  .++.+.++...++.|++.+...+ ..+++.|.+|+++|+++.++. +.+..+|..++|.++|.+.+
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~  374 (394)
T TIGR00883       295 AALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVA  374 (394)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHH
Confidence            43332  12222  24566666777888887766656 499999999999999999984 56667889999999999988

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.46  E-value=1.9e-12  Score=121.32  Aligned_cols=182  Identities=16%  Similarity=0.172  Sum_probs=122.0

Q ss_pred             HHHHHHHHHHHhhcccccchhhHHHHH-HhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHH
Q 017429           42 ELFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (371)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~  120 (371)
                      .++...+..++............|.+. +++|.+..+      .++..+...++..++.+++|+++||+|||+.+.....
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~------a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~  332 (467)
T PRK09556        259 VIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKED------AINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIA  332 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHH
Confidence            344455555555555455667778554 678999988      8999999999999999999999999999988766544


Q ss_pred             HHHHHHHH--HHhHHHHHHHHHHHHHHhhh-ccchhHHHHHHhhhccccchhhhhHhhhhhhhh-HHhHHHhhhhhhcCc
Q 017429          121 SVVIFNTL--FGLSVNFWMAVLTRFLLGSL-NGLLGPIKAYACEIFREEHQALGLSTVSTAWGI-GLIIGPALGGFLAQP  196 (371)
Q Consensus       121 ~~~~~~~~--~~~~~~~~~~~~~r~l~G~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~i~~~l~~~  196 (371)
                      +..++...  ....++.....+.+++.|++ .+..........|.+|++.|+++.|+.+....+ |..++|.+.|.+.+.
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~  412 (467)
T PRK09556        333 LALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADP  412 (467)
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcc
Confidence            44333222  22334566666777888864 333333356777999999999999999888886 779999999999882


Q ss_pred             C-CCCCCcccccccccCccchhHHHHHHHHHHHHHHHHh
Q 017429          197 A-EKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAF  234 (371)
Q Consensus       197 ~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (371)
                      . +++.. .+    ....+|+..+.+..++.++..+..+
T Consensus       413 ~~~g~~~-~~----~~~~~~~~~f~~~~~~~~~~~~~~~  446 (467)
T PRK09556        413 TKNGTPI-FG----YTLTGWAGTFAALDIAAIGCICLMA  446 (467)
T ss_pred             ccccccc-cc----ccccChHHHHHHHHHHHHHHHHHHH
Confidence            1 11100 00    0023456666666555555544444

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.45  E-value=1.5e-12  Score=123.01  Aligned_cols=182  Identities=15%  Similarity=0.072  Sum_probs=110.4

Q ss_pred             cccccchhhHHHHHHhhccccccccch----hh-hHH-HHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHH
Q 017429           55 LPISSLFPFLYFMIKDFQIAKREEDIG----SY-AGY-VGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTL  128 (371)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~-~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~  128 (371)
                      +..+......|.+.++.|.+..+....    .. ... ...+..++.+++.++.++++||+|||+.++++..+.+++..+
T Consensus       302 ~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~  381 (502)
T TIGR00887       302 IAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFV  381 (502)
T ss_pred             HHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHH
Confidence            333344555787778888765431000    00 011 233345566778899999999999999998888777776655


Q ss_pred             HHhHHH----HHHHHHHHHHHhh-hccchhHHHHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCCCCc
Q 017429          129 FGLSVN----FWMAVLTRFLLGS-LNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNL  203 (371)
Q Consensus       129 ~~~~~~----~~~~~~~r~l~G~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~~~~  203 (371)
                      .+...+    ...+...-+...+ +.+.....+.+.+|.+|++.|+++.++.+....+|.+++|.+.+.+.+..+..   
T Consensus       382 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~---  458 (502)
T TIGR00887       382 LGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPT---  458 (502)
T ss_pred             HHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhcccccc---
Confidence            554321    1111111111122 22233334778899999999999999999999999999999999988721100   


Q ss_pred             ccccccccCccchhHHHHHHHHHHHHHHHHhhccccccC
Q 017429          204 FSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHR  242 (371)
Q Consensus       204 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  242 (371)
                      .|+..   ..++...+.+.++..++..+..+++||++++
T Consensus       459 ~~~~~---~~~~~~~~~i~~~~~~~~~i~~~~lpEt~~~  494 (502)
T TIGR00887       459 KGYPT---GIWMGHVLEIFALFMFLGILFTLLIPETKGK  494 (502)
T ss_pred             ccccc---cccchHHHHHHHHHHHHHHHHheEeccCCCC
Confidence            00000   1223344455555555555556778997754

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.45  E-value=4e-12  Score=116.04  Aligned_cols=146  Identities=15%  Similarity=0.129  Sum_probs=117.7

Q ss_pred             HHHHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHH
Q 017429           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV  122 (371)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~  122 (371)
                      ++...+..++............|.+.++.|.+..+      .|...+...++..+..++.|++.||+|+|+.+..+.++.
T Consensus       207 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~  280 (382)
T PRK11128        207 VWRFLLCVSLLQGSHAAYYGFSAIYWQAAGYSAST------IGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICG  280 (382)
T ss_pred             HHHHHHHHHHHHHHhHhHHHHHHHHHHHCCCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence            33333334444444444556667677888998888      899999888999999999999999999999999999998


Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhh-hhhhhHHhHHHhhhhhhcC
Q 017429          123 VIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVS-TAWGIGLIIGPALGGFLAQ  195 (371)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~i~~~l~~  195 (371)
                      ++..+..+..++++.+++..++.|++.+...+. ..++.+. +++++++..+..+ ....+|..+||.++|.+.+
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~  354 (382)
T PRK11128        281 VVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQ  354 (382)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888899999999999999988877775 7777776 5666788888875 5567888999999999998

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.44  E-value=5.4e-12  Score=115.09  Aligned_cols=174  Identities=18%  Similarity=0.229  Sum_probs=125.7

Q ss_pred             HHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHH
Q 017429           49 IVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTL  128 (371)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~  128 (371)
                      ......-+.+....+...+.++-|++..+      ..+.+....+...+..+++..+.||+|||+.++.+..+..+..++
T Consensus       278 ~~~qq~sGi~ai~~Yst~i~~~aG~~~~~------a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~  351 (485)
T KOG0569|consen  278 SFAQQFSGINAIFFYSTSIFKTAGFTPEE------AQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLL  351 (485)
T ss_pred             HHHHHhcCcceeHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence            33344445566667777889999999988      889999999999999999999999999999999999988888777


Q ss_pred             HHhHH---H-H--H---HHHHHHHHHhhhccc-hhH-HHHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcC
Q 017429          129 FGLSV---N-F--W---MAVLTRFLLGSLNGL-LGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA  197 (371)
Q Consensus       129 ~~~~~---~-~--~---~~~~~r~l~G~~~~~-~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~  197 (371)
                      +....   + .  |   ..+++.++..+..+. ..| .+-+.+|++|++.|..++++......+...+-...-..+.+  
T Consensus       352 ~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~--  429 (485)
T KOG0569|consen  352 MSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQN--  429 (485)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            65421   1 1  1   123334444443222 344 49999999999999999999888888888776666666665  


Q ss_pred             CCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhhccccccCCC
Q 017429          198 EKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHN  244 (371)
Q Consensus       198 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  244 (371)
                                    .+|-...+.+.+.+.+..+..++.+|||+.+..
T Consensus       430 --------------~~g~~~filF~i~~~~~~i~~~~~lPETkgr~~  462 (485)
T KOG0569|consen  430 --------------VIGPYVFILFVIPLAIFLIYLYRYLPETKGRTP  462 (485)
T ss_pred             --------------HhcchhhHHHHHHHHHHHHHHHHhCcccCCCCH
Confidence                          222222234445555556778899999986543

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.43  E-value=3.5e-12  Score=118.16  Aligned_cols=130  Identities=19%  Similarity=0.229  Sum_probs=98.7

Q ss_pred             chhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 017429           60 LFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAV  139 (371)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~  139 (371)
                      ....+|.+.++.|.+..+      .+...+...++..++.++.|++.||+|||+.+..+.++..+..+.....++.....
T Consensus       250 ~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (426)
T PRK12307        250 IFGLLPTYLAGEGFDTGV------VSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLL  323 (426)
T ss_pred             HHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHH
Confidence            445677777778888777      88888999999999999999999999999999988877766655444322211122


Q ss_pred             HHHHHHhh--hccchhH-HHHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcC
Q 017429          140 LTRFLLGS--LNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (371)
Q Consensus       140 ~~r~l~G~--~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~  195 (371)
                      +.-++.|+  +.....+ .+.++.|.+|+++|++++|+......+|+.++|.+.+++.+
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~  382 (426)
T PRK12307        324 LGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGI  382 (426)
T ss_pred             HHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHH
Confidence            22233333  2223333 47788999999999999999999999999999999999988

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.43  E-value=9.1e-12  Score=110.31  Aligned_cols=174  Identities=14%  Similarity=0.142  Sum_probs=133.2

Q ss_pred             ChhHHHHHHHHHHHhhcccccchhhH-HHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHH
Q 017429           39 PITELFSIWIIVLCTALPISSLFPFL-YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM  117 (371)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~  117 (371)
                      +++.++...+.+++...+.....+++ |.+.+..|.+.+.      ++++..++.++..+|+++.|+++|| +.|+.+..
T Consensus       209 ~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~------vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~  281 (394)
T COG2814         209 RRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSA------VSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIA  281 (394)
T ss_pred             cCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhH------HHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHH
Confidence            34455556666666666666556655 6677778999999      9999999999999999999999999 98999888


Q ss_pred             HHHHHHHHHHHHHh-HHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcC
Q 017429          118 GTASVVIFNTLFGL-SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (371)
Q Consensus       118 ~~~~~~~~~~~~~~-~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~  195 (371)
                      ...+.++..+...+ .++.+..++.-++.|+..+..... ...+++ ..++.+..+.+++...+++|..+|..++|.+.+
T Consensus       282 ~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~  360 (394)
T COG2814         282 ALLLLALALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLD  360 (394)
T ss_pred             HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            87777766665555 455666666666677765554443 556666 446789999999999999999999999999999


Q ss_pred             cCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhhc
Q 017429          196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL  236 (371)
Q Consensus       196 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (371)
                                      ++++....++.++..++.++..+..
T Consensus       361 ----------------~~g~~~~~~~~a~l~~~a~~~~~~~  385 (394)
T COG2814         361 ----------------ALGYAATGWVGAALLLLALLLALLS  385 (394)
T ss_pred             ----------------hhchHHHHHHHHHHHHHHHHHHHHH
Confidence                            6777777788888777766655443

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.42  E-value=5.8e-12  Score=116.88  Aligned_cols=168  Identities=13%  Similarity=0.032  Sum_probs=109.5

Q ss_pred             HHHHHHHHHHhhcccccchhhHHHHH-HhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhc--CCchHH-HHH
Q 017429           43 LFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY--GRKPVI-IMG  118 (371)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--Grr~~l-~~~  118 (371)
                      ++.+.+..++............|.+. +++|.+..+      .+...+.+.++..++.++.|+++||+  ++|+.. ...
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~------a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~  318 (434)
T PRK11663        245 IWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVT------ANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIF  318 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHH------HHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHH
Confidence            33344444444444445556777666 668999888      89999999999999999999999999  333332 222


Q ss_pred             HHH---HHHHHHHHHhHHHHHHHHHHHHHHhhhccchh-HHHHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhc
Q 017429          119 TAS---VVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLG-PIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (371)
Q Consensus       119 ~~~---~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~  194 (371)
                      .+.   ..+...... ..+.....+..+..|++..... .......|.+|+++|++++|+.+....+|..++|.+.|.+.
T Consensus       319 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~  397 (434)
T PRK11663        319 AAGILLSVGSLWLMP-FASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVL  397 (434)
T ss_pred             HHHHHHHHHHHHHcc-cccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHH
Confidence            111   111111111 2233333344444454322222 23566789999999999999999999999999999999999


Q ss_pred             CcCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHH
Q 017429          195 QPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAA  233 (371)
Q Consensus       195 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (371)
                      +                .++|...++..+++.++..+..
T Consensus       398 ~----------------~~g~~~~f~~~~~~~~~~~~~~  420 (434)
T PRK11663        398 E----------------IWHWTGFFVVISIAAGISALLL  420 (434)
T ss_pred             H----------------hcccHHHHHHHHHHHHHHHHHH
Confidence            8                5556666677766666554433

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.42  E-value=3.5e-12  Score=118.97  Aligned_cols=171  Identities=14%  Similarity=0.080  Sum_probs=109.7

Q ss_pred             HHHHHHHHHHhhcccccchhhHHHHHHh-hccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhc--CCchHHH-HH
Q 017429           43 LFSIWIIVLCTALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY--GRKPVII-MG  118 (371)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--Grr~~l~-~~  118 (371)
                      ++...+..++..........++|.+.++ .|.+..+      .++....+.++..++.++.|+++||+  |||+... ..
T Consensus       255 ~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~------~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~  328 (452)
T PRK11273        255 LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDK------SSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFF  328 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHH
Confidence            4444444444444445556778876654 7888877      88888888999999999999999999  5554332 22


Q ss_pred             HHHHHHHHHHHHh--HHHHHHHHHHHHHHhhhc-cchhHHHHHHhhhccccchhhhhHhhhhhhhhHHh-HHHhhhhhhc
Q 017429          119 TASVVIFNTLFGL--SVNFWMAVLTRFLLGSLN-GLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLI-IGPALGGFLA  194 (371)
Q Consensus       119 ~~~~~~~~~~~~~--~~~~~~~~~~r~l~G~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~g~~i~~~l~  194 (371)
                      ..+..++.+....  ..+.+..++..++.|.+. +.......+..|.+|++.|+++.|+.+....+|+. .+|.+.|.+.
T Consensus       329 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~  408 (452)
T PRK11273        329 MTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTV  408 (452)
T ss_pred             HHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence            2223333322222  223444444444455432 22222355678999999999999999887778765 4899999999


Q ss_pred             CcCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhh
Q 017429          195 QPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFW  235 (371)
Q Consensus       195 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (371)
                      +                ..+|+..+.+.+..+++.++....
T Consensus       409 ~----------------~~g~~~~f~~~~~~~~~~~~~~~~  433 (452)
T PRK11273        409 D----------------FFGWDGGFMVMIGGSILAVILLIV  433 (452)
T ss_pred             H----------------HhcchHHHHHHHHHHHHHHHHHHH
Confidence            8                445666666666666655554443

>TIGR00895 2A0115 benzoate transport

Probab=99.42  E-value=1.9e-12  Score=118.61  Aligned_cols=142  Identities=20%  Similarity=0.264  Sum_probs=111.4

Q ss_pred             HHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHH
Q 017429           46 IWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF  125 (371)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~  125 (371)
                      .+...++............|.+.+++|.+..+      .++..+...++..++.++.|+++||+|||+.+....+.....
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  328 (398)
T TIGR00895       255 LWLLYFMLLVGVYFLTNWLPKLMVELGFSLSL------AATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFA  328 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence            33444444444455566778888889999888      899999999999999999999999999995554444443333


Q ss_pred             HHHHHhHHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhh
Q 017429          126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL  193 (371)
Q Consensus       126 ~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l  193 (371)
                      .++....++.+.+++..++.|++.+...+. .+++.|.+|+++|++++++......+|..+||.++|.+
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       329 VLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            333333566777778888899987777775 99999999999999999999999999999999999876

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.40  E-value=8.1e-11  Score=103.50  Aligned_cols=267  Identities=12%  Similarity=0.008  Sum_probs=173.5

Q ss_pred             chhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHH-HHHHHHHHHHHHHHhHHH--H-HHHHHHHHHHhhhccchhHH
Q 017429           80 IGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII-MGTASVVIFNTLFGLSVN--F-WMAVLTRFLLGSLNGLLGPI  155 (371)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~-~~~~~~~~~~~~~~~~~~--~-~~~~~~r~l~G~~~~~~~~~  155 (371)
                      .+.+.+...++..+...+.+|+.|.++|+.|+||..+ ....+..++.+...+.++  + +..++...+..++.....+.
T Consensus        56 ~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vf  135 (438)
T COG2270          56 STAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVF  135 (438)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhhee
Confidence            4455888899999999999999999999999665554 445555555566665543  4 44445556677776666665


Q ss_pred             -HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhh--hhhcCcCCCCCCc-ccccccccCccchhHHHHHHHHHHHHHH
Q 017429          156 -KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG--GFLAQPAEKYPNL-FSSESLFGKFPYFLPCLCISLFAFGVTI  231 (371)
Q Consensus       156 -~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~--~~l~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (371)
                       .+++.+..++++-++..++-.....+|+.+.-++.  ........+++.. ++-...- ...-|..+.+.++..++..+
T Consensus       136 yds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~ri~~~l~A~W~li~~i  214 (438)
T COG2270         136 YDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPAD-GEDVRITGLLAALWWLLFAL  214 (438)
T ss_pred             hhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccc-cccchhHHHHHHHHHHHHHh
Confidence             99999999998878777766556666665443332  2222211111100 1100001 33355556666666555444


Q ss_pred             -HHhhccccccCCCCCCccchhhhhhhhhhhhhhhhhcccCCccccccccccchHHHHHHHHHHHhhhhhHHHHHHHHhc
Q 017429          232 -AAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWAN  310 (371)
Q Consensus       232 -~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (371)
                       .++..|+.++..   ........+.           -++.....++..+++.+...++..+++.=...+...+-..|..
T Consensus       215 Pm~~~v~~~~~~~---~~~~~~l~~g-----------~k~L~~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~  280 (438)
T COG2270         215 PMILNVHDAEKIS---SPPPTALRNG-----------FKELKSTFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGA  280 (438)
T ss_pred             HHHhccccccccc---ccchHHHHHH-----------HHHHHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence             444555544321   0110111000           1112235667777888888888888888777777777777877


Q ss_pred             CCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHhhhhc
Q 017429          311 SPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVNFEHS  367 (371)
Q Consensus       311 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~  367 (371)
                      ..     +|++..+...+....++.++++++ +.+++++|+|.|+++..+++++.+.
T Consensus       281 ~~-----~gls~~~lll~g~~~~vvA~lg~i-i~g~Ld~rfg~k~vl~~~lvi~~~~  331 (438)
T COG2270         281 AD-----LGLSSTELLLIGIALSVVAALGAI-IAGFLDERFGSKPVLMIGLVILSIA  331 (438)
T ss_pred             HH-----cCccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCceeehHHHHHHHHH
Confidence            55     899999999999999999999994 8899999999999888888776543

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.38  E-value=1.7e-11  Score=113.54  Aligned_cols=180  Identities=13%  Similarity=0.174  Sum_probs=139.1

Q ss_pred             hHHHHHHHHHHHhhcccccchhhHH-HHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCc--hHHHH
Q 017429           41 TELFSIWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRK--PVIIM  117 (371)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr--~~l~~  117 (371)
                      +.+....++.++..-+...+..... +..+++|++..+      ...+..+..+..++|++++|++.||+|.|  +++++
T Consensus       281 ~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~------l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~  354 (477)
T PF11700_consen  281 RQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQ------LIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLI  354 (477)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHH
Confidence            3344444444444444444444444 444589999999      88888889999999999999999999999  89888


Q ss_pred             HHHHHHHHHHHHHh--------HHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHh
Q 017429          118 GTASVVIFNTLFGL--------SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPA  188 (371)
Q Consensus       118 ~~~~~~~~~~~~~~--------~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~  188 (371)
                      +.+++.+..+...+        .++.+.+++.-++.|+..|...+. .++.+|+.|+++.+..+|++....-....+||+
T Consensus       355 ~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPl  434 (477)
T PF11700_consen  355 SLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPL  434 (477)
T ss_pred             HHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence            88877655555444        567888999999999998888886 999999999999999999999999999999999


Q ss_pred             hhhhhcCcCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhhcccccc
Q 017429          189 LGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLH  241 (371)
Q Consensus       189 i~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  241 (371)
                      +.+.+.+..+               +.|..+....++.++.+++.+++++++.
T Consensus       435 l~g~i~~~tg---------------~~r~g~~~l~~lf~~gl~ll~~v~~~~g  472 (477)
T PF11700_consen  435 LFGLITDATG---------------SQRYGFLFLLVLFLIGLILLFFVDVEKG  472 (477)
T ss_pred             HHHHHHHHhC---------------CchhHHHHHHHHHHHHHHHHhhccchhh
Confidence            9999998432               2455556666666666666676665443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK10504 putative transporter; Provisional

Probab=99.38  E-value=1e-11  Score=116.59  Aligned_cols=147  Identities=16%  Similarity=0.179  Sum_probs=113.8

Q ss_pred             HHHHHHHHHHhhcccccchhhHHHHHH-hhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHH
Q 017429           43 LFSIWIIVLCTALPISSLFPFLYFMIK-DFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (371)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~  121 (371)
                      +.......++............|.+.+ .+|.++.+      .++......++..++.++.|++.||+|||+++..+.++
T Consensus       263 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~  336 (471)
T PRK10504        263 FSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFH------AGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLG  336 (471)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence            333444444444444455556676665 47888877      88888888888888899999999999999999998887


Q ss_pred             HHHHHHHHHhH---HHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcC
Q 017429          122 VVIFNTLFGLS---VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (371)
Q Consensus       122 ~~~~~~~~~~~---~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~  195 (371)
                      .++...+..+.   ++.+.+.+..++.|++.+...+. ..+..+..|+++|+.+.++.+....+|..+|+.++|.+.+
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~  414 (471)
T PRK10504        337 LALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLG  414 (471)
T ss_pred             HHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77776655543   33444455567778877776654 8888899999999999999999999999999999999877

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.37  E-value=4e-12  Score=116.78  Aligned_cols=129  Identities=18%  Similarity=0.257  Sum_probs=103.0

Q ss_pred             hhhHH-HHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHH-HHHhHHHHHHH
Q 017429           61 FPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNT-LFGLSVNFWMA  138 (371)
Q Consensus        61 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~-~~~~~~~~~~~  138 (371)
                      ....| .+.+++|.+..+      .+++.+...++..++.++.|+++||+|||+.+..+.++..+... .....++.+.+
T Consensus       258 ~~~~~~~~~~~~g~s~~~------~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (405)
T TIGR00891       258 QDLLPTYLKADLGLSPHT------VANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVL  331 (405)
T ss_pred             hhhhHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHH
Confidence            34455 445678999888      99999999999999999999999999999999888776533332 33334556666


Q ss_pred             HHHHHHHhhhccchhH-HHHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcC
Q 017429          139 VLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (371)
Q Consensus       139 ~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~  195 (371)
                      .+..++.|++.+...+ ...++.|.+|+++|++++|+.+....+|..++|.++|.+.+
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~  389 (405)
T TIGR00891       332 GLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQ  389 (405)
T ss_pred             HHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666777765444444 58899999999999999999999999999999999999998

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.37  E-value=3.7e-12  Score=115.22  Aligned_cols=128  Identities=16%  Similarity=0.185  Sum_probs=113.2

Q ss_pred             hhHHHHHHh-hccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHHhHHH-HHHHH
Q 017429           62 PFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVN-FWMAV  139 (371)
Q Consensus        62 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~-~~~~~  139 (371)
                      ...|.+.++ +|.+..+      .+++.+...++..++.++.+++.||+|||+.+..+.++.+++.....+.++ .+.++
T Consensus       232 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (365)
T TIGR00900       232 ALFPYVQSKYLGRGSTH------YGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFL  305 (365)
T ss_pred             HHhHHHHHHHhCCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHH
Confidence            566777665 7888888      999999999999999999999999999999999888877777777777664 78888


Q ss_pred             HHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcC
Q 017429          140 LTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (371)
Q Consensus       140 ~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~  195 (371)
                      +..++.|++.+...+. .+++.|..|+++|++..++.+....+|..++|.++|.+.+
T Consensus       306 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~  362 (365)
T TIGR00900       306 VLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLAD  362 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8899999998887775 8999999999999999999999999999999999999987

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.37  E-value=2.3e-11  Score=113.91  Aligned_cols=156  Identities=17%  Similarity=0.220  Sum_probs=130.5

Q ss_pred             hcccccchhhHHHHH-HhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHHhH
Q 017429           54 ALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS  132 (371)
Q Consensus        54 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~  132 (371)
                      .+....+...+|.+. +++|.+...      .|++.+++.+|.++++++.+++.+|+++++.+..+.++.+++.+..++.
T Consensus       231 ~l~~~a~~aLlPl~a~~~l~~~a~~------yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~  304 (524)
T PF05977_consen  231 NLFASAVWALLPLFARDVLGGGASG------YGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALS  304 (524)
T ss_pred             HHhhhHHHHhhhHHHHHHhCCcHHH------HHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc
Confidence            333344456677665 568888888      9999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCCCCccccccccc
Q 017429          133 VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFG  211 (371)
Q Consensus       133 ~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~~~~~g~~~~~~  211 (371)
                      ++.+..++..++.|++.....+. .+.+.+..|++.||++++++++....+..+|..+.|.+.+                
T Consensus       305 ~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~----------------  368 (524)
T PF05977_consen  305 PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLAD----------------  368 (524)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----------------
Confidence            99999999999999987776664 8889999999999999999999999999999999999998                


Q ss_pred             CccchhHHHHHHHHHHHHHH
Q 017429          212 KFPYFLPCLCISLFAFGVTI  231 (371)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~  231 (371)
                      .++.+..+.+.++..++..+
T Consensus       369 ~~g~~~al~~a~~~lll~~~  388 (524)
T PF05977_consen  369 HFGVRTALLIAGAALLLSAL  388 (524)
T ss_pred             HhCHHHHHHHHHHHHHHHHH
Confidence            55555555655554444433

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.35  E-value=3.2e-11  Score=113.59  Aligned_cols=170  Identities=16%  Similarity=0.135  Sum_probs=114.7

Q ss_pred             ccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHHhHH--
Q 017429           56 PISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSV--  133 (371)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--  133 (371)
                      .......+.|.+.++.|.+...      ..+......++..++.++.|+++||+|||++++.+.++.+++.++++...  
T Consensus       286 ~~~~~~~~~p~i~~~~g~~~~~------~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~  359 (479)
T PRK10077        286 GINVVLYYAPEIFKTLGASTDI------ALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT  359 (479)
T ss_pred             ChhHHHHHHHHHHHHcCCCCch------HHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhc
Confidence            3334445668888888988776      66777777888899999999999999999999999998888877765432  


Q ss_pred             HH-H-HHHHHHHHHhhhccc-hhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCCCCccccccc
Q 017429          134 NF-W-MAVLTRFLLGSLNGL-LGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESL  209 (371)
Q Consensus       134 ~~-~-~~~~~r~l~G~~~~~-~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~~~~~g~~~~  209 (371)
                      +. . ......++.+++.+. ..+. ..+++|.+|+++|++++++.+....+|..+++.+.+.+.+..          +.
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~----------~~  429 (479)
T PRK10077        360 QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNS----------WL  429 (479)
T ss_pred             CcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc----------ch
Confidence            11 1 222233334443332 3354 899999999999999999999999999988877766554210          00


Q ss_pred             ccCccchhHHHHHHHHHHHHHH-HHhhcccccc
Q 017429          210 FGKFPYFLPCLCISLFAFGVTI-AAFWLPETLH  241 (371)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~  241 (371)
                      .+.++|+..+++.++..++..+ .+++.||+++
T Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  462 (479)
T PRK10077        430 VAHFHNGFSYWIYGCMGVLAALFMWKFVPETKG  462 (479)
T ss_pred             hhhccCccHHHHHHHHHHHHHHHHHhccccCCC
Confidence            0133444445555554444433 4456677653

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.35  E-value=1.6e-11  Score=112.71  Aligned_cols=132  Identities=16%  Similarity=0.094  Sum_probs=108.3

Q ss_pred             hHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhccchhHH-HHHHhhh
Q 017429           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEI  162 (371)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~  162 (371)
                      .|...++..+...++.++.|++.||+|||+.+.++.++.++...+....++.+.+++.+++.|++....... ..+..+.
T Consensus       256 ~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~  335 (396)
T TIGR00882       256 FGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQ  335 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            788888888888999999999999999999999999888888877777888888888999999886655443 6677888


Q ss_pred             ccccchhhhhHh-hhhhhhhHHhHHHhhhhhhcCcCCCCCCcccccccccCccchhHHHHHHHHHHHHHH
Q 017429          163 FREEHQALGLST-VSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTI  231 (371)
Q Consensus       163 ~~~~~r~~~~~~-~~~~~~~g~~~g~~i~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (371)
                      .+++.+++..+. .+....+|..++|.++|++.+                .++|+.++.+.++..++..+
T Consensus       336 ~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~----------------~~G~~~~f~~~~~~~~i~~~  389 (396)
T TIGR00882       336 FDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYD----------------SIGFQGAYLVLGCIVLLFTL  389 (396)
T ss_pred             CCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHH----------------hcccHHHHHHHHHHHHHHHH
Confidence            888888877766 577889999999999999998                55667777776666555433

>TIGR00898 2A0119 cation transport protein

Probab=99.35  E-value=8.1e-12  Score=118.39  Aligned_cols=137  Identities=20%  Similarity=0.118  Sum_probs=104.4

Q ss_pred             HHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHHhHHHH--HHHHHHHHHHhhhccchhH-HHHHHhhhcc
Q 017429           88 GSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF--WMAVLTRFLLGSLNGLLGP-IKAYACEIFR  164 (371)
Q Consensus        88 ~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~r~l~G~~~~~~~~-~~~~~~~~~~  164 (371)
                      .....+..+++.++.+++.||+|||+.+.++.++.+++.++..+.++.  +..++..++.+++.+...+ .+.+.+|.+|
T Consensus       361 ~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p  440 (505)
T TIGR00898       361 LFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYP  440 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            344556777889999999999999999999998888888777765433  4444445555565555445 4899999999


Q ss_pred             ccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhhccccccC
Q 017429          165 EEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHR  242 (371)
Q Consensus       165 ~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  242 (371)
                      ++.|++++|+.+....+|.+++|.+.+ +.                 ..++..++.+.++..++..+..+++||+..+
T Consensus       441 ~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~lpet~~~  500 (505)
T TIGR00898       441 TVVRNLGVGVCSTMARVGSIISPFLVY-LG-----------------EKWLFLPLVLFGGLALLAGILTLFLPETKGV  500 (505)
T ss_pred             HHHHhhhHhHHHHHHHHHHHHHhHHHH-HH-----------------HHHHhhHHHHHHHHHHHHHHHHHcCcCCCCC
Confidence            999999999999999999999999998 43                 2334455666666666666677788987654

>PRK15075 citrate-proton symporter; Provisional

Probab=99.33  E-value=3.4e-11  Score=111.81  Aligned_cols=137  Identities=18%  Similarity=0.175  Sum_probs=97.8

Q ss_pred             hhcccccchhhHHHHHHh-hccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHH-HHH
Q 017429           53 TALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNT-LFG  130 (371)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~-~~~  130 (371)
                      ..........+.|.+.++ +|.+..+      .++....+.++..++.++.|+++||+|||++++.+.++..+... ...
T Consensus       250 ~~~~~~~~~~~~p~~l~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~  323 (434)
T PRK15075        250 TTVSFYLITVYTPTFGKTVLHLSAAD------SLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALS  323 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence            334444566677876654 7998888      88888888899999999999999999999998876554433221 111


Q ss_pred             ---hHHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhh-hhhhHHhHHHhhhhhhcC
Q 017429          131 ---LSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVST-AWGIGLIIGPALGGFLAQ  195 (371)
Q Consensus       131 ---~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~-~~~~g~~~g~~i~~~l~~  195 (371)
                         ..++.....+..++.|++.+...+. ..++.|.+|++.|++++++.+. +..+++.++|.+.+.+.+
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~  393 (434)
T PRK15075        324 WLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIH  393 (434)
T ss_pred             HHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHH
Confidence               1223333444455556666665554 7889999999999999998644 444567789999999988

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.32  E-value=2.3e-11  Score=111.31  Aligned_cols=160  Identities=15%  Similarity=0.127  Sum_probs=112.1

Q ss_pred             HHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHH-HHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHH
Q 017429           50 VLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFM-FGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTL  128 (371)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~  128 (371)
                      .++............+.+.+|.|.+.++      .|++..... ....++.++.|++.||+|+|+.+..+.++.++..+.
T Consensus       217 ~~l~~~~~~~~~~~~~~~l~~~G~s~~~------ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~  290 (390)
T TIGR02718       217 ALLSAMTAVSGFGLSKLYLVDAGWPLEW------IGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALL  290 (390)
T ss_pred             HHHHHHHHHHHHHHhhHHHHhcCCCHHH------HHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            3334443444455666777788999998      999888776 466677899999999999999998877665333322


Q ss_pred             HHh------HHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccc-cchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCC
Q 017429          129 FGL------SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFRE-EHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY  200 (371)
Q Consensus       129 ~~~------~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~-~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~  200 (371)
                      ...      .++...++....+.+++.+...+. .+.+.+..++ +.+++.+++.+...++|..+||.++|.+.+     
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~-----  365 (390)
T TIGR02718       291 WFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTD-----  365 (390)
T ss_pred             HHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence            221      122333344445556666666554 7777777765 889999999999999999999999999998     


Q ss_pred             CCcccccccccCccchhHHHHHHHHHHHHHH
Q 017429          201 PNLFSSESLFGKFPYFLPCLCISLFAFGVTI  231 (371)
Q Consensus       201 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (371)
                                 ..++...+...+++.+++++
T Consensus       366 -----------~~G~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       366 -----------RFGYAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             -----------HHccHHHHHHHHHHHHHHHH
Confidence                       55666666766665555443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.31  E-value=3.7e-11  Score=105.50  Aligned_cols=149  Identities=13%  Similarity=0.138  Sum_probs=116.6

Q ss_pred             hHHHHHHHHHHHhhcccccchhhHH-HHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhc--CCchHHHH
Q 017429           41 TELFSIWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY--GRKPVIIM  117 (371)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--Grr~~l~~  117 (371)
                      +.++.++++.++..+.+..+.-..| ++.|..|.+..+      .++..+.+-++.+.|.+++|+++||+  |||....+
T Consensus       252 k~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~------a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~  325 (448)
T COG2271         252 KLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVK------ANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMAL  325 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHH------HHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHH
Confidence            4566777888888888888888888 555778999988      99999999999999999999999986  66665544


Q ss_pred             H-HHHHHHHHHHHHhHH--HHHHHHHHHHHHhhh-ccchhHHHHHHhhhccccchhhhhHhhhhhhhh-HHhHHHhhhhh
Q 017429          118 G-TASVVIFNTLFGLSV--NFWMAVLTRFLLGSL-NGLLGPIKAYACEIFREEHQALGLSTVSTAWGI-GLIIGPALGGF  192 (371)
Q Consensus       118 ~-~~~~~~~~~~~~~~~--~~~~~~~~r~l~G~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~i~~~  192 (371)
                      . ++...++.+..-.++  |++...++.++.|+. .|...-+.....|..|++--|++.|+.+.+..+ |...+....++
T Consensus       326 i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~  405 (448)
T COG2271         326 IFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGY  405 (448)
T ss_pred             HHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCccee
Confidence            3 333334444443443  557777788888885 455544577888999999999999999888887 88888888888


Q ss_pred             hcC
Q 017429          193 LAQ  195 (371)
Q Consensus       193 l~~  195 (371)
                      +.|
T Consensus       406 i~d  408 (448)
T COG2271         406 IAD  408 (448)
T ss_pred             eEe
Confidence            888

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.31  E-value=6e-11  Score=110.28  Aligned_cols=176  Identities=11%  Similarity=0.035  Sum_probs=107.9

Q ss_pred             HHHHHHHHHHhhcccccchhhHHHHHHh-hccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHH
Q 017429           43 LFSIWIIVLCTALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (371)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~  121 (371)
                      ++...+..++............|.+.++ .|.+..+      .++....+.++..++.++.|+++||+++++....+...
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~------~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~  326 (438)
T TIGR00712       253 LWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDK------SSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFF  326 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhh------HHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHH
Confidence            3333333333333334455677766654 6888888      88989999999999999999999999754322233222


Q ss_pred             HH---HHHHHHHh--HHHHHHHHHHHHHHhhhccchhH-HHHHHhhhccccchhhhhHhhhhhhhhH-HhHHHhhhhhhc
Q 017429          122 VV---IFNTLFGL--SVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIG-LIIGPALGGFLA  194 (371)
Q Consensus       122 ~~---~~~~~~~~--~~~~~~~~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g-~~~g~~i~~~l~  194 (371)
                      ..   ++......  ..+.+......++.|++...... ......|.+|+++|+++.|+.+....+| ..++|.+.|.+.
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~  406 (438)
T TIGR00712       327 MTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTV  406 (438)
T ss_pred             HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHH
Confidence            21   11111111  12333333344445543222222 2456779999999999999998877776 578999999999


Q ss_pred             CcCCCCCCcccccccccCccchhHHHHHHHHHHHH-HHHHhhccccc
Q 017429          195 QPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETL  240 (371)
Q Consensus       195 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~  240 (371)
                      +                ..+|...+.+.....+++ +...+.+||.+
T Consensus       407 ~----------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (438)
T TIGR00712       407 D----------------FFGWDGGFMVMIGGSILAVILLIVVMIGEK  437 (438)
T ss_pred             H----------------hccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            8                444555555554444443 44566677654

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.31  E-value=1.1e-11  Score=115.21  Aligned_cols=112  Identities=16%  Similarity=0.220  Sum_probs=94.5

Q ss_pred             hHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHhhhccchhHH-HHHHhh
Q 017429           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS-VNFWMAVLTRFLLGSLNGLLGPI-KAYACE  161 (371)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~  161 (371)
                      .+++.+...++.+++.+++++++||+|+|+.+..+.++.+++.+...+. ++.+.+++..++.|++.+...+. .++++|
T Consensus       259 ~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  338 (437)
T TIGR00792       259 FSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVAD  338 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            6777778889999999999999999999999999988888877766654 45666677778888888777775 888888


Q ss_pred             hcc-------ccchhhhhHhhhhhhhhHHhHHHhhhhhhcC
Q 017429          162 IFR-------EEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (371)
Q Consensus       162 ~~~-------~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~  195 (371)
                      ..+       ++.+|...++.+....+|..+++.+.|.+.+
T Consensus       339 ~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~  379 (437)
T TIGR00792       339 TVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILG  379 (437)
T ss_pred             hhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            865       4567899999999999999999999999987

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.30  E-value=9.7e-11  Score=108.69  Aligned_cols=163  Identities=12%  Similarity=0.056  Sum_probs=100.7

Q ss_pred             hcccccchhhHHHHH-HhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHH--
Q 017429           54 ALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFG--  130 (371)
Q Consensus        54 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~--  130 (371)
                      ....+....++|.+. +++|.+..+      .+...++..++..++.++.|+++||+|||+.+.++.++.++......  
T Consensus       256 ~~~~~~~~~~lp~~l~~~~g~s~~~------~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~  329 (432)
T PRK10406        256 SLCFYTFTTYMQKYLVNTAGMHANV------ASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSA  329 (432)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHH
Confidence            333444566777655 567888777      88888888888889999999999999999988776655433332221  


Q ss_pred             h--HHHHHHHHHHHHHHhhhccchhH-HHHHHhhhccccchhhhhHhhhhhhh-hHHhHHHhhhhhhcCcCCCCCCcccc
Q 017429          131 L--SVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWG-IGLIIGPALGGFLAQPAEKYPNLFSS  206 (371)
Q Consensus       131 ~--~~~~~~~~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~-~g~~~g~~i~~~l~~~~~~~~~~~g~  206 (371)
                      .  .++....+..-.+.+++.+...+ ...+.+|++|++.|++++|+.+.... +.+...|.+.+.+..           
T Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~-----------  398 (432)
T PRK10406        330 LQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKS-----------  398 (432)
T ss_pred             HHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHH-----------
Confidence            1  12222222222222233333333 47889999999999999999865544 334457887775532           


Q ss_pred             cccccCccchhHHHHHHHHHHHHHHHHhhccc
Q 017429          207 ESLFGKFPYFLPCLCISLFAFGVTIAAFWLPE  238 (371)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  238 (371)
                           ...|...+++.++..++..+..+++++
T Consensus       399 -----~g~~~~~~~~~~~~~~i~~~~~~~l~~  425 (432)
T PRK10406        399 -----IGMETAFFWYVTLMAVVAFLVSLMLHR  425 (432)
T ss_pred             -----hCCCcHHHHHHHHHHHHHHHHHHHhhh
Confidence                 111333445555555555555555443

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.30  E-value=7.6e-11  Score=108.55  Aligned_cols=127  Identities=13%  Similarity=0.010  Sum_probs=100.3

Q ss_pred             hhHHHH-HHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHHhH-----HHH
Q 017429           62 PFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS-----VNF  135 (371)
Q Consensus        62 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~  135 (371)
                      ...|.+ .+++|.+..+      .++......++..++.++.|+++||+|+|+.+.++.++.+++..+....     .+.
T Consensus       236 ~~~p~~~~~~~g~~~~~------~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  309 (406)
T PRK15402        236 ALSPVILISGEQLSSYE------YGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAY  309 (406)
T ss_pred             HHhHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccH
Confidence            345544 4668888877      8888777888889999999999999999999999888777776666543     345


Q ss_pred             HHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcC
Q 017429          136 WMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (371)
Q Consensus       136 ~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~  195 (371)
                      +++++..++.|++.+...+. ..... ..++++|++..+..+....+|..+|+.+++.+.+
T Consensus       310 ~~~~~~~~~~g~g~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~  369 (406)
T PRK15402        310 LWLTAGLSLYAFGIGLANAGLYRLTL-FSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYL  369 (406)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHh-hhccccccHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            66777788888887776554 44443 3445889999999999999999999999999987

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.29  E-value=6.8e-10  Score=104.48  Aligned_cols=153  Identities=12%  Similarity=0.141  Sum_probs=114.7

Q ss_pred             HHHHHhhccccccccchhhhHHHHH-HHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHH---HhH-HHHHHHH
Q 017429           65 YFMIKDFQIAKREEDIGSYAGYVGS-SFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLF---GLS-VNFWMAV  139 (371)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~-~~~~~~~  139 (371)
                      |.+.+++|.+..+      .++... ...++.+++.++.|+++||+|+|+.+.++.++.++..+.+   +.. ++.+.+.
T Consensus       247 ~~l~~~~G~s~~~------~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~  320 (491)
T PRK11010        247 TFLIRGVGFDAGE------VGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMG  320 (491)
T ss_pred             HHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence            4445678999988      998874 5568999999999999999999988877666555443322   222 3444444


Q ss_pred             HHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCCCCcccccccccCccchhH
Q 017429          140 LTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLP  218 (371)
Q Consensus       140 ~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~~~~~g~~~~~~~~~~~~~  218 (371)
                      +.-++..++.|...+. .++..+..+++.+++..++.+...++|..+++.++|.+.+                .++|...
T Consensus       321 ~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~----------------~~G~~~~  384 (491)
T PRK11010        321 AAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVE----------------AHGWPTF  384 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HhChHHH
Confidence            4556655555554454 8888999999999999999999999999989899999998                5567777


Q ss_pred             HHHHHHHHHHHHHHHhhcccc
Q 017429          219 CLCISLFAFGVTIAAFWLPET  239 (371)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~e~  239 (371)
                      +.+.++++++.++....++++
T Consensus       385 f~~~~~~~l~~l~~~~~~~~~  405 (491)
T PRK11010        385 YLFSVAAAVPGLLLLLVCRQT  405 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc
Confidence            788888887777666666654

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.29  E-value=4.1e-11  Score=112.41  Aligned_cols=155  Identities=10%  Similarity=0.048  Sum_probs=98.1

Q ss_pred             chhhHHHH-HHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCc-------hHHHHHHHHHHHHHHHHHh
Q 017429           60 LFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRK-------PVIIMGTASVVIFNTLFGL  131 (371)
Q Consensus        60 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr-------~~l~~~~~~~~~~~~~~~~  131 (371)
                      .....|.+ .+++|.+..+      .+.+.+++.++..++.+++|+++||+|||       ..+.+..++.++..++...
T Consensus       271 ~~~~~p~~l~~~~g~s~~~------a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~  344 (476)
T PLN00028        271 MDNIIAEYFYDRFGLSLET------AGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGR  344 (476)
T ss_pred             HHhHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcc
Confidence            34445544 5667999888      89999999999999999999999999865       2233333333333444444


Q ss_pred             HHHHHHHHHHHHHHhhhccchhH-HHHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCCCCcccccccc
Q 017429          132 SVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLF  210 (371)
Q Consensus       132 ~~~~~~~~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~~~~~g~~~~~  210 (371)
                      .++.+..++..++.+++.+.... ..+++.+.. +++|+...|+.+.+..+|+.++|.+.+ ..+               
T Consensus       345 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~---------------  407 (476)
T PLN00028        345 ANSLGAAIVVMILFSIFVQAACGATFGIVPFVS-RRSLGVISGLTGAGGNVGAVLTQLLFF-TGS---------------  407 (476)
T ss_pred             cchHHHHHHHHHHHHHHHHHhhhhhcccCcccC-hhhchhhhhhhhccccHHHHHHHHHHH-hcC---------------
Confidence            55555555555555554333333 355566654 468999999987766666666665533 111               


Q ss_pred             cCccchhHHHHHHHHHHHHHHHHhhccc
Q 017429          211 GKFPYFLPCLCISLFAFGVTIAAFWLPE  238 (371)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e  238 (371)
                       ..+|...+++.+++.+++.+..++.+.
T Consensus       408 -~~~y~~~f~~~~~~~~i~~~~~~~~~~  434 (476)
T PLN00028        408 -SYSTETGISLMGVMIIACTLPVAFIHF  434 (476)
T ss_pred             -CccHhhHHHHHHHHHHHHHHHHHheec
Confidence             234566667777666666666665553

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.28  E-value=2e-10  Score=105.13  Aligned_cols=125  Identities=11%  Similarity=0.004  Sum_probs=97.9

Q ss_pred             HHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 017429           64 LYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRF  143 (371)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~  143 (371)
                      .|.+.+++|.+..+      .++....+.++..++.++.|++.||.+++..+....+..+...++....++.+.+.+..+
T Consensus       240 ~p~~~~~~g~s~~~------~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  313 (394)
T PRK10213        240 RPVYMNLAGFGVDG------LTLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVATGVAI  313 (394)
T ss_pred             HHHHHHhcCCChhH------HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            36777888999888      899999999999999999999999964443333333334444445455667778888888


Q ss_pred             HHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcC
Q 017429          144 LLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (371)
Q Consensus       144 l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~  195 (371)
                      +.|++.+...+. .+++.+..| +++++..+.......+|..+||.++|.+.+
T Consensus       314 l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~  365 (394)
T PRK10213        314 IWGLTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALD  365 (394)
T ss_pred             HHHHHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999988887776 778888887 456677777778889999999999999998

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.28  E-value=3.5e-11  Score=109.35  Aligned_cols=147  Identities=16%  Similarity=0.150  Sum_probs=101.0

Q ss_pred             HHHHHHHHHHhhcccccchhhHHHHH-HhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcC-CchHHH-HHH
Q 017429           43 LFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYG-RKPVII-MGT  119 (371)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G-rr~~l~-~~~  119 (371)
                      ++.+.+..++............|.+. +++|.+..+      .++..+...++..++.++.|+++||.+ ||+... ...
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~  291 (379)
T TIGR00881       218 LWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEK------ASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFF  291 (379)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHH
Confidence            33344444444444445556666554 567888888      899999999999999999999999864 333322 221


Q ss_pred             H-HHHHHHHHHHh--HHHHHHHHHHHHHHhhhccchhH-HHHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcC
Q 017429          120 A-SVVIFNTLFGL--SVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (371)
Q Consensus       120 ~-~~~~~~~~~~~--~~~~~~~~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~  195 (371)
                      . ...++......  ..+.....+..++.|+......+ ...+..|.+|+++|+++.++.+....+|..++|.+.|.+.+
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~  371 (379)
T TIGR00881       292 MALIIVSLLVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLAD  371 (379)
T ss_pred             HHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHH
Confidence            1 11222222222  23445555666677765433333 47789999999999999999999999999999999999998

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.27  E-value=5.2e-11  Score=111.06  Aligned_cols=174  Identities=15%  Similarity=0.222  Sum_probs=147.1

Q ss_pred             HHHHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcC--CchHHHHHHH
Q 017429           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYG--RKPVIIMGTA  120 (371)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G--rr~~l~~~~~  120 (371)
                      ++...+...+..++.......+|.+.++.+.++.+      .+.+.++..+...++.++.|+++|+..  ++.+..++.+
T Consensus       300 fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~------aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll  373 (509)
T KOG2504|consen  300 FLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSND------AAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLL  373 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhh------hHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHH
Confidence            34455556666677777778889999999999999      999999999999999999999999988  5566677888


Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCC
Q 017429          121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK  199 (371)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~  199 (371)
                      +.+++.+.++++++++.++..-.+.|++.|.+... ..++.|+.+.++-..+.|+.....+++.++||+++|.+.+..+ 
T Consensus       374 ~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg-  452 (509)
T KOG2504|consen  374 IAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITG-  452 (509)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccC-
Confidence            88888889999999999999999999999998887 6799999999999999999999999999999999999888432 


Q ss_pred             CCCcccccccccCccchhHHHHHHHHHHHHHHHHhhcc
Q 017429          200 YPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLP  237 (371)
Q Consensus       200 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (371)
                                    .|...++.++++.+++.+.++..|
T Consensus       453 --------------~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  453 --------------NYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             --------------CeeeehhhcChHHHHHHHHHHHhH
Confidence                          245556777777777666666666

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.27  E-value=1.3e-10  Score=105.68  Aligned_cols=183  Identities=16%  Similarity=0.273  Sum_probs=135.7

Q ss_pred             hHHHHHHHHHHHhhcccccchhhHHHHHHhhc-cccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHH
Q 017429           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQ-IAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (371)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~  119 (371)
                      +++....+..++.......+..+.+.+.++.| .+...      .+...++..++-++.-...+++..|+|.|+++.++.
T Consensus       207 ~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~------~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~  280 (400)
T PF03825_consen  207 PRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGST------IGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLAL  280 (400)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhH------HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            33444555666777777778888888888888 66666      787778888888899999999999999999999999


Q ss_pred             HHHHHHHHHHHhH-HHHHHHHHH----HHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhh-hhhhHHhHHHhhhhh
Q 017429          120 ASVVIFNTLFGLS-VNFWMAVLT----RFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVST-AWGIGLIIGPALGGF  192 (371)
Q Consensus       120 ~~~~~~~~~~~~~-~~~~~~~~~----r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~-~~~~g~~~g~~i~~~  192 (371)
                      +..++=..+++.. ++.+..++.    ..+.|+..+....+ ..++.+..|++.|+++.++++. ..++|..+|..++|+
T Consensus       281 ~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~  360 (400)
T PF03825_consen  281 VAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGW  360 (400)
T ss_pred             HHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            9999988888876 444443333    35689988887775 9999999999999999999865 578999999999999


Q ss_pred             hcCcCCCCCCcccccccccCccchhHHHHHHHHHHHH-HHHHhhcccc
Q 017429          193 LAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPET  239 (371)
Q Consensus       193 l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~  239 (371)
                      +.+       .+|-+..+   .|...+.+.++..++. ++.+++.||+
T Consensus       361 l~~-------~~g~~~~~---~~~~~~~v~a~~~~~~~~~f~~~fk~~  398 (400)
T PF03825_consen  361 LYD-------AFGARGMF---DWSAVFLVFAVMALVILVLFVILFKPK  398 (400)
T ss_pred             HHH-------Hhcchhhh---hHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence            998       44444433   1333334444444433 3344455554

>TIGR00896 CynX cyanate transporter

Probab=99.27  E-value=1.6e-10  Score=104.39  Aligned_cols=140  Identities=13%  Similarity=0.030  Sum_probs=106.3

Q ss_pred             HHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhc-CCchHHHHHHHHHHHHHHH
Q 017429           50 VLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-GRKPVIIMGTASVVIFNTL  128 (371)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~  128 (371)
                      .++...........+|.+.++.|.+..+      .+...+...++.+++.++.|++.||+ +||+.+.++.++.+++.+.
T Consensus       206 ~~~~~~~~~~~~~~lp~~~~~~g~~~~~------~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~  279 (355)
T TIGR00896       206 FGLQSGLYYSLIGWLPAILISHGASAAT------AGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCG  279 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHH
Confidence            3333444444556778888888998888      99999999999999999999999999 5677777777777777766


Q ss_pred             HHhHHHHHHHHHHHHHHhhhccchhHH-HHHHhhhcc-ccchhhhhHhhhhhhhhHHhHHHhhhhhhcCc
Q 017429          129 FGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFR-EEHQALGLSTVSTAWGIGLIIGPALGGFLAQP  196 (371)
Q Consensus       129 ~~~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~  196 (371)
                      ..+..+..... ..++.|++.+...+. .+.+.+..+ +++++...++.+....+|..++|.+.|.+.+.
T Consensus       280 ~~~~~~~~~~~-~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~  348 (355)
T TIGR00896       280 LLFAPMHGLWA-WALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDI  348 (355)
T ss_pred             HHHhhhhHHHH-HHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66654433222 346778888887775 666665544 56678888988888888999999999999984

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.25  E-value=3e-11  Score=103.85  Aligned_cols=133  Identities=21%  Similarity=0.266  Sum_probs=97.4

Q ss_pred             HHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhh-ccchhHHHHHHhhhccccchh
Q 017429           91 FMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSL-NGLLGPIKAYACEIFREEHQA  169 (371)
Q Consensus        91 ~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~-~~~~~~~~~~~~~~~~~~~r~  169 (371)
                      ..+.-+.|.++.+.+.||+|||+.+..+.++++++.++...+.+.....+.-+..-++ .|++.++++|..|.+|...|+
T Consensus       390 tslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRa  469 (528)
T KOG0253|consen  390 TSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRA  469 (528)
T ss_pred             HHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhh
Confidence            3456678999999999999999999999999999988887765433333333333332 455666799999999999999


Q ss_pred             hhhHhhhhhhhhHHhHHHhhhhhhcCcCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhhcc-cccc
Q 017429          170 LGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLP-ETLH  241 (371)
Q Consensus       170 ~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-e~~~  241 (371)
                      .+.|..+...-+|+++.|+++ ...+                 -+-..+..+...+.+++.+...++| |++.
T Consensus       470 tgvGtcSsmaRIggI~~p~iA-~~~e-----------------~s~sl~i~vy~~~~ilagIavcffPiEtkG  524 (528)
T KOG0253|consen  470 TGVGTCSSMARIGGIFSPVIA-MRAE-----------------LSTSLPIFVYGALFILAGIAVCFFPIETKG  524 (528)
T ss_pred             cchhhhhhHHhhhhhhhhHHH-HHhc-----------------cceeehHHHHHHHHHHHHHHheeeeeccCC
Confidence            999999999999999999999 3332                 1223444555556666666666666 5543

>PRK10054 putative transporter; Provisional

Probab=99.24  E-value=8.7e-11  Score=107.60  Aligned_cols=111  Identities=16%  Similarity=0.033  Sum_probs=93.2

Q ss_pred             hHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHhhhccchhHH-HHHHhh
Q 017429           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS-VNFWMAVLTRFLLGSLNGLLGPI-KAYACE  161 (371)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~  161 (371)
                      .+++.+...+......++.|++.||+++|+.+..+.++..++.....+. ++.+.+++..++.|++.+...|. ..++.+
T Consensus       246 ~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~  325 (395)
T PRK10054        246 VAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYMLIDH  325 (395)
T ss_pred             HHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            6777777777777788899999999999999999988888887766654 56776777888899988777776 889999


Q ss_pred             hccccchhhhhHhhhhhhhhHHhHHHhhhhhhcC
Q 017429          162 IFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (371)
Q Consensus       162 ~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~  195 (371)
                      ..|++.|++..+..+ ...+|..+||.++|.+.+
T Consensus       326 ~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~  358 (395)
T PRK10054        326 IAPPGMKASYFSAQS-LGWLGAAINPLVSGVILT  358 (395)
T ss_pred             hCCcccceehHhHHH-HHHHHHHHHHHHHHHHHH
Confidence            999999999988655 556899999999999998

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.24  E-value=1.6e-10  Score=101.62  Aligned_cols=154  Identities=15%  Similarity=0.171  Sum_probs=127.6

Q ss_pred             HHHH-HhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 017429           65 YFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRF  143 (371)
Q Consensus        65 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~  143 (371)
                      ..+. .++|++..+      ..++.....+..+++++++|++.||+|.|+++..+.++..+.++...+......+.+.-.
T Consensus       276 ~~fg~~~~gls~~~------lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gl  349 (438)
T COG2270         276 GVFGAADLGLSSTE------LLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGL  349 (438)
T ss_pred             HHHHHHHcCccHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHH
Confidence            3444 499999999      999999999999999999999999999999999999999888887777776777777788


Q ss_pred             HHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCCCCcccccccccCccchhHHHHH
Q 017429          144 LLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCI  222 (371)
Q Consensus       144 l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  222 (371)
                      +.|+..|..+.. .++.+++.|+++-++.+|+++.....+..+||.+-+.+.+..++               -|.-+...
T Consensus       350 l~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~---------------~r~g~~~i  414 (438)
T COG2270         350 LVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGS---------------SRAGVLSI  414 (438)
T ss_pred             HHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcc---------------hhhHHHHH
Confidence            899988887775 99999999999999999999999999999999999999884332               33334555


Q ss_pred             HHHHHHHHHHHhhcccc
Q 017429          223 SLFAFGVTIAAFWLPET  239 (371)
Q Consensus       223 ~~~~~~~~~~~~~~~e~  239 (371)
                      .++..+.++..+++|++
T Consensus       415 ~vll~iGl~~L~~v~~~  431 (438)
T COG2270         415 IVLLLIGLLLLLRVKVP  431 (438)
T ss_pred             HHHHHhhHhhEEeecCC
Confidence            55555556666666665

>TIGR01272 gluP glucose/galactose transporter

Probab=99.22  E-value=3.9e-10  Score=99.48  Aligned_cols=146  Identities=16%  Similarity=0.117  Sum_probs=107.5

Q ss_pred             hHHHHHHHHHHHhhcccccchhhHHHHHHh---hccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHH
Q 017429           41 TELFSIWIIVLCTALPISSLFPFLYFMIKD---FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM  117 (371)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~  117 (371)
                      +.+....+..++..........+.+.+.++   +|+++++      .++..+.+..+..++.++.+++.||+|+|+++.+
T Consensus       140 ~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~------a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~  213 (310)
T TIGR01272       140 THLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQ------AAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAF  213 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence            334444455555554555556677766643   5888888      9999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcC
Q 017429          118 GTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (371)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~  195 (371)
                      +.++..++.++....++... ...-++.|++.+...|. .+...+..|++ .+.+.++. ....+|+.++|.+.|.+.|
T Consensus       214 ~~~l~~~~~~l~~~~~~~~~-~~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad  289 (310)
T TIGR01272       214 NAFLAVLLSIGAALTHGYVA-MWFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLAD  289 (310)
T ss_pred             HHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHH
Confidence            88877777665555444332 23455788888887775 77887877764 34555654 4566899999999999998

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.22  E-value=4.3e-10  Score=102.65  Aligned_cols=123  Identities=13%  Similarity=0.119  Sum_probs=90.6

Q ss_pred             HHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHH
Q 017429           65 YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGL-SVNFWMAVLTRF  143 (371)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~r~  143 (371)
                      |.+.+.+|.+..+      .++..+...++..++.++.|++.||+|+|+.+..+..+.+++.++... .++.+..++..+
T Consensus       224 ~~~~~~~g~s~~~------~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  297 (382)
T PRK10091        224 PYMMFISGFSETS------MTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAF  297 (382)
T ss_pred             HHHHHhcCCCHHH------HHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            4555668998888      999999999999999999999999999999999888887777655543 445555555666


Q ss_pred             HHhhhccc-hhHHH-HHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcC
Q 017429          144 LLGSLNGL-LGPIK-AYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (371)
Q Consensus       144 l~G~~~~~-~~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~  195 (371)
                      +.+++... ..+.. ....+..+++.++.+  ..+....+|..+||.++|.+.+
T Consensus       298 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~  349 (382)
T PRK10091        298 ICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLT  349 (382)
T ss_pred             HHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHH
Confidence            66665433 33333 344444455555544  3456788999999999999988

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=99.21  E-value=2.1e-10  Score=101.52  Aligned_cols=147  Identities=22%  Similarity=0.329  Sum_probs=106.7

Q ss_pred             hHHHHHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhh----hcCCchHHH
Q 017429           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD----RYGRKPVII  116 (371)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~Grr~~l~  116 (371)
                      +.++.+....+...++...-..+.+++.+++|++.+-      .+.+-...-+...+.+|+.|..+|    ||||||.++
T Consensus        32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~~lGvphk~------~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI  105 (498)
T KOG0637|consen   32 RKLISVASIAAGVQFGWALELSYLTPYLQSLGVPHKW------SSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFI  105 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccHHHHHcCCCccc------ccccccccccccceecccccccccccccccccccchH
Confidence            5555555555555566666667778888999999887      777666777777899999999999    689877766


Q ss_pred             H-HHHHHHHHHHHHHhHHHHH-----------------HHHHHHHHHhhhc-cchhHHHHHHhhhccccchhh-hhHhhh
Q 017429          117 M-GTASVVIFNTLFGLSVNFW-----------------MAVLTRFLLGSLN-GLLGPIKAYACEIFREEHQAL-GLSTVS  176 (371)
Q Consensus       117 ~-~~~~~~~~~~~~~~~~~~~-----------------~~~~~r~l~G~~~-~~~~~~~~~~~~~~~~~~r~~-~~~~~~  176 (371)
                      . +.+...++.++..++.++.                 .+++..-+.-++. -...|+.++++|...++++.+ +++.+.
T Consensus       106 ~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~  185 (498)
T KOG0637|consen  106 LAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFS  185 (498)
T ss_pred             HHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHH
Confidence            5 4566667777777654432                 2333333444443 456678999999998777666 999999


Q ss_pred             hhhhhHHhHHHhhhhhh
Q 017429          177 TAWGIGLIIGPALGGFL  193 (371)
Q Consensus       177 ~~~~~g~~~g~~i~~~l  193 (371)
                      ...++|+.+|..+++++
T Consensus       186 ~f~avGnvLGY~~g~y~  202 (498)
T KOG0637|consen  186 FFMAVGNVLGYALGSYL  202 (498)
T ss_pred             HHHHhcceeeeeccccc
Confidence            99999999998887643

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.20  E-value=5.4e-10  Score=92.88  Aligned_cols=124  Identities=20%  Similarity=0.269  Sum_probs=100.4

Q ss_pred             HHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHH
Q 017429           66 FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA-SVVIFNTLFGLSVNFWMAVLTRFL  144 (371)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~r~l  144 (371)
                      .+.+++|+|..+      .+-+.+....-..+.+++.|.++||+|++...+.+.. ...++.....+  +.+.=+....+
T Consensus       290 fF~~rfGlS~~~------a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~  361 (459)
T KOG4686|consen  290 FFQKRFGLSAVS------AGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTF  361 (459)
T ss_pred             HHHHhhCCChhh------ccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHH
Confidence            567899999988      8888888888889999999999999999987776544 34444444433  22233456677


Q ss_pred             HhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcC
Q 017429          145 LGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA  197 (371)
Q Consensus       145 ~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~  197 (371)
                      .|+........ +..++.+.|+++-|++.|..+...++|-.+.|+++|++.+..
T Consensus       362 lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~  415 (459)
T KOG4686|consen  362 LGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGD  415 (459)
T ss_pred             HhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCC
Confidence            88887777775 889999999999999999999999999999999999999843

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.19  E-value=2.2e-10  Score=105.10  Aligned_cols=130  Identities=11%  Similarity=0.048  Sum_probs=103.5

Q ss_pred             hhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhh-cCCchHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 017429           61 FPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR-YGRKPVIIMGTASVVIFNTLFGLSVNFWMAV  139 (371)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~  139 (371)
                      ....|.+.++.+.++.+      .+++.+...++...+..+.+++.|| ++.++.+..+.++.+++.++.+..++.+.+.
T Consensus       228 ~~~~p~~~~~~~~~~~~------~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  301 (400)
T PRK11646        228 MLMLPIMVNDIAGSPSA------VKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLF  301 (400)
T ss_pred             HHhhhhhHHhhcCCchH------HHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            34567766666556666      8888777777666666666776664 6667777788888888877777788887777


Q ss_pred             HHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCc
Q 017429          140 LTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP  196 (371)
Q Consensus       140 ~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~  196 (371)
                      +..++.|++.+...+. .+++.|..|+++|++++++.+....+|..+||.++|++.+.
T Consensus       302 ~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~  359 (400)
T PRK11646        302 TLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDL  359 (400)
T ss_pred             HHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHH
Confidence            7778888887777665 89999999999999999999999999999999999999883

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=99.18  E-value=1.9e-09  Score=90.52  Aligned_cols=134  Identities=13%  Similarity=0.184  Sum_probs=106.1

Q ss_pred             hcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHHhH-
Q 017429           54 ALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS-  132 (371)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-  132 (371)
                      ....+.+..+.|.+.+++|.+.+|      ...+.++..+|..+ +++.|.+.|++|++.++.+|.+...++..+...+ 
T Consensus        15 ~Gt~Y~Fs~yS~~Lk~~l~~sq~~------l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~   87 (250)
T PF06813_consen   15 SGTTYTFSAYSPQLKSRLGYSQSQ------LNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAV   87 (250)
T ss_pred             cCcccchhhhhHHHHHHhCCCHHH------HHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            335567778889999999999999      99999999999876 5899999999999999999999999988776552 


Q ss_pred             ------HHHHHHHHHHHHHhhhccchhH-HHHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcC
Q 017429          133 ------VNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (371)
Q Consensus       133 ------~~~~~~~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~  195 (371)
                            .++|.+.+..++.|.+.+.... +.....+.|| ++||++.|+.-...++++.+-..+...+..
T Consensus        88 ~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~  156 (250)
T PF06813_consen   88 SGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFG  156 (250)
T ss_pred             hCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcC
Confidence                  3566776666777666555544 3566668887 579999999988888888776666655554

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.18  E-value=4.6e-10  Score=105.25  Aligned_cols=177  Identities=16%  Similarity=0.186  Sum_probs=111.5

Q ss_pred             hHHHHHHHHHHHhhcccccchhhHHHHH-HhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHH----
Q 017429           41 TELFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVI----  115 (371)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l----  115 (371)
                      +.++...+..+............+|.+. +++|.+..+      .++..++..++..++.++.|+++||+++|+..    
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~------~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~  334 (465)
T TIGR00894       261 LPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKE------NGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTA  334 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHH------hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHH
Confidence            3445555566666666666667778554 568998888      99999999999999999999999998754321    


Q ss_pred             ----HHHHHHH--HHHHHHHHh-HHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHH
Q 017429          116 ----IMGTASV--VIFNTLFGL-SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGP  187 (371)
Q Consensus       116 ----~~~~~~~--~~~~~~~~~-~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~  187 (371)
                          ..+....  ++..+.... ..+....++.-.+.+.+.+...+. .....|..|+ .+|...++.+....+|+.++|
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p  413 (465)
T TIGR00894       335 ARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIAS  413 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHH
Confidence                1111111  111111111 223333344444444444443343 4455566665 799999999999999999999


Q ss_pred             hhhhhhcCcCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhhcc
Q 017429          188 ALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLP  237 (371)
Q Consensus       188 ~i~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (371)
                      .+.+.+.+..       +      ...|...+.+.++..++..+.....+
T Consensus       414 ~l~g~~~~~~-------~------~~~~~~~f~~~~~~~~i~~i~~~~~~  450 (465)
T TIGR00894       414 TLAGNILSQD-------S------KNVWLIVFLIMAFVNILCVIFYLIFG  450 (465)
T ss_pred             HhhheeeCCC-------C------chHHHHHHHHHHHHHHHHHHHeeeee
Confidence            9999887621       0      12366666777666666555544443

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.17  E-value=3.7e-10  Score=103.80  Aligned_cols=149  Identities=14%  Similarity=0.167  Sum_probs=100.7

Q ss_pred             HHHHHhhccccccccchhhhHHHHHHHH-HHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHH---HhH-HHHHHHH
Q 017429           65 YFMIKDFQIAKREEDIGSYAGYVGSSFM-FGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLF---GLS-VNFWMAV  139 (371)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~-~~~~~~~  139 (371)
                      +.+.+++|.+.++      .+++..... ++..++.++.|++.||+|||+.+..+.++..+..+..   +.. ++.+.++
T Consensus       234 ~~l~~~~G~~~~~------~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~  307 (402)
T PRK11902        234 TFLIRGAGFSAGE------VGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMA  307 (402)
T ss_pred             HHHHHhcCCCHHH------HHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence            4566778999888      888876654 5678999999999999999998887776665554333   333 3455555


Q ss_pred             HHHHH----HhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCCCCcccccccccCcc
Q 017429          140 LTRFL----LGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFP  214 (371)
Q Consensus       140 ~~r~l----~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~~~~~g~~~~~~~~~  214 (371)
                      +.-++    .|++.+...+. ..++.+.+|.+++    ++.+...++|...++.++|.+.+                .++
T Consensus       308 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~G~l~~----------------~~G  367 (402)
T PRK11902        308 LAIGIENLCGGMGTAAFVALLMALCNRSFSATQY----ALLSALASVGRVYVGPTSGYLVE----------------AYG  367 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHH----HHHHHHHHHHHHHHHHHHHHHHH----------------HhC
Confidence            55443    34444444443 6677777766554    45555556777766778999998                666


Q ss_pred             chhHHHHHHHHHHHHHHHHhhcccc
Q 017429          215 YFLPCLCISLFAFGVTIAAFWLPET  239 (371)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~e~  239 (371)
                      |+..+...++++++.++.....+.+
T Consensus       368 ~~~~f~~~~~~~~~~~~~~~~~~~~  392 (402)
T PRK11902        368 WPGFYLMTVVIALPGLALLWLMRGT  392 (402)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            7777777777777666655554443

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.17  E-value=3.9e-10  Score=103.93  Aligned_cols=147  Identities=12%  Similarity=0.132  Sum_probs=98.6

Q ss_pred             HHHHHHHHHHhhcccccchhhHHHHHHhh--ccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchH-HHHHH
Q 017429           43 LFSIWIIVLCTALPISSLFPFLYFMIKDF--QIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPV-IIMGT  119 (371)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~-l~~~~  119 (371)
                      ++...+..++...........+|.+.+++  +.+..+      .+.......++..++.++.|+++||++||+. +....
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~------~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~  317 (412)
T TIGR02332       244 IMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIM------IGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPY  317 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH------hHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHH
Confidence            33444445555555666778889888875  456666      8888999999999999999999999997775 33343


Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcC
Q 017429          120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (371)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~  195 (371)
                      +...++..+.....+....+.+-.+.+++.....+. .....|.+|+++|++++|+.+....+|+.++|.+.+.+.+
T Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~  394 (412)
T TIGR02332       318 LFAAAGWLLASATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKD  394 (412)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccc
Confidence            343333322222222222222222223332222333 4555678999999999999999999999999999999988

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.15  E-value=1.2e-09  Score=100.81  Aligned_cols=274  Identities=18%  Similarity=0.174  Sum_probs=158.0

Q ss_pred             hhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhc-----CCchHHHHHHHHHHHHHHHHHhH---
Q 017429           61 FPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-----GRKPVIIMGTASVVIFNTLFGLS---  132 (371)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----Grr~~l~~~~~~~~~~~~~~~~~---  132 (371)
                      .+..|.+.+++|+++++      .....+...+.. ...++.|.++|.+     .||+.++++.++..++.+.++..   
T Consensus        10 ~~~~~~l~~~l~ls~~~------~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~   82 (433)
T PF03092_consen   10 LAIYPFLKDDLGLSPAQ------LQRLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPAS   82 (433)
T ss_pred             HHHHHHHHHHcCCCHHH------HHHHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccc
Confidence            35567888999999998      777777766664 4578999999976     36666677777776655555542   


Q ss_pred             -HHHHHHHHHHHHHhhhccchhHH-HHHHhhhcc--ccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCCCCcccccc
Q 017429          133 -VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFR--EEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSES  208 (371)
Q Consensus       133 -~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~--~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~~~~~g~~~  208 (371)
                       .+.....+.-++..+|.+...++ -+...|...  ++.|+...+.......+|.+++..++|.+.+             
T Consensus        83 ~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~-------------  149 (433)
T PF03092_consen   83 ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLD-------------  149 (433)
T ss_pred             cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhh-------------
Confidence             34555555556666777776664 788888763  3347888888888999999999999999988             


Q ss_pred             cccCccchhHHHHHHHHHHHHHHH-HhhccccccCCCCCCccchhhhhhhhhhhhhhhhhcccCCccccccccccchHHH
Q 017429          209 LFGKFPYFLPCLCISLFAFGVTIA-AFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSS  287 (371)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (371)
                         ..+++..+.+.+.+..+..+. .+..+|.+.....+..  ....+..+.....    .++.....++.++.+.++..
T Consensus       150 ---~~~~~~~f~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~--~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~i~~~  220 (433)
T PF03092_consen  150 ---SFGPQGVFLISAALPLLMLIVALFLLEERKVRPADEVF--SFGKEEVPCLFGS----FREQLSELWRALQQRAIWQP  220 (433)
T ss_pred             ---cCCCeEEehHHHHHHHHHHHHHHHhhhhccccccchhh--cccccccchhhHH----HHHHHHHHHHHHhhhHHHHH
Confidence               333333345555555554444 4444442111111000  0000000000000    00111234455666777766


Q ss_pred             HH-HHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHhhhh
Q 017429          288 II-VYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVNFEH  366 (371)
Q Consensus       288 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~  366 (371)
                      .+ ..++.......... -..|.... ...+.|+++...+.+..+..++.+++.. +......+.+-|++.....++..+
T Consensus       221 ~~~~~~~~~~~~~~~~a-~~fy~~~~-~~~gp~fs~~f~~~~~~vg~~~~l~g~~-~y~~~~~~~~~R~~~~~t~~~~~~  297 (433)
T PF03092_consen  221 ILFFIFFFNLPPSISSA-SSFYFQTD-ALGGPHFSPSFYGTLSIVGSIASLLGIL-LYRKYFSNWSWRRIFVVTTLVSVL  297 (433)
T ss_pred             HHHHHHHHHhccCCCCc-cEEEEEec-cccccccCHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHH
Confidence            55 33322222211111 01122211 1114558999999998777777777774 455555566777777666655443

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.15  E-value=1.2e-09  Score=98.02  Aligned_cols=143  Identities=25%  Similarity=0.284  Sum_probs=118.8

Q ss_pred             hhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhccchhHH-HHHHhh
Q 017429           83 YAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACE  161 (371)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~  161 (371)
                      ..|.+.+...+.-++...+..++.+|+|.|+.++++..+..+=...++++++++.+.+.+.+.|+-.+..... ..|+++
T Consensus       260 ~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~  339 (412)
T PF01306_consen  260 MYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITA  339 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3899999999999999999999999999999999999999999999999999999999999999988877765 999999


Q ss_pred             hccccchhhhhHhh-hhhhhhHHhHHHhhhhhhcCcCCCCCCcccccccccCccchhHHHHHHHHHHHHH-HHHhhcccc
Q 017429          162 IFREEHQALGLSTV-STAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPET  239 (371)
Q Consensus       162 ~~~~~~r~~~~~~~-~~~~~~g~~~g~~i~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~  239 (371)
                      .+|+|..++...+. +.+.++|..+.+.++|.+.|                +.|++..+++++.+.++.. +..+.++++
T Consensus       340 ~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd----------------~~G~~~tylimg~iv~~~~li~~f~l~~~  403 (412)
T PF01306_consen  340 HFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYD----------------RIGFQHTYLIMGLIVLPFTLISAFTLKKD  403 (412)
T ss_dssp             HS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHS--S
T ss_pred             hCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHh----------------hcCcHHHHHHHHHHHHHHHHHheeeecCC
Confidence            99999988888875 78899999999999999999                7777777777776666544 455666654


Q ss_pred             cc
Q 017429          240 LH  241 (371)
Q Consensus       240 ~~  241 (371)
                      ++
T Consensus       404 ~~  405 (412)
T PF01306_consen  404 KK  405 (412)
T ss_dssp             SS
T ss_pred             Cc
Confidence            43

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.14  E-value=4.5e-10  Score=98.85  Aligned_cols=172  Identities=17%  Similarity=0.186  Sum_probs=123.9

Q ss_pred             hhHHHHHHHHHHHhhcccccchhhHH-HHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHH
Q 017429           40 ITELFSIWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (371)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~  118 (371)
                      .++.+.+++.++....+.-.++..+| ++.++|+.+..+      .+.....+.+...+..+.+|+++||+|.+|++.+.
T Consensus       217 ~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~------Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~  290 (417)
T COG2223         217 NKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVT------AGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAV  290 (417)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhh------HHHHHHHHHHHHHHHHhccchhhhhccchhHHHHH
Confidence            45566666666666665556677777 566889999999      99999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHhH-------HHHHHHHHHHHHHhhhccchhH-HHHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhh
Q 017429          119 TASVVIFNTLFGLS-------VNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG  190 (371)
Q Consensus       119 ~~~~~~~~~~~~~~-------~~~~~~~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~  190 (371)
                      ...++++..+..+.       .+....++..+..+++.|.-.. ++..+..++|+ +-|.+.|+.....++|+.+-|..-
T Consensus       291 f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~  369 (417)
T COG2223         291 FVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAF  369 (417)
T ss_pred             HHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-hhhHHHHHHHHhccccccchhHHH
Confidence            88888887776654       3344444444444444443333 46667777765 578889999999999999999999


Q ss_pred             hhhcCcCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHH
Q 017429          191 GFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAA  233 (371)
Q Consensus       191 ~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (371)
                      +...+.++               .+...+++.....+++.+..
T Consensus       370 g~~~~~tg---------------~~~~~f~~~~~~~~~a~v~~  397 (417)
T COG2223         370 GVSLDLTG---------------SYTGAFMLLLAFYLVALVLT  397 (417)
T ss_pred             HHHHHhcc---------------cHHHHHHHHHHHHHHHHHHH
Confidence            98887322               24455555555555554443

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.12  E-value=4.8e-10  Score=105.73  Aligned_cols=143  Identities=17%  Similarity=0.130  Sum_probs=114.0

Q ss_pred             HHHHHHhhcccccchhhHHHHH-HhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHH
Q 017429           47 WIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF  125 (371)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~  125 (371)
                      .+..++............|.+. +.+|.+..+      .++......++..++.++.|++.||+|||+.+.++..+.+++
T Consensus       261 ~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~  334 (485)
T TIGR00711       261 CVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQ------AGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVG  334 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence            3344444444444455667555 457888888      999999999999999999999999999999999998888888


Q ss_pred             HHHHHh----HHHHHHHHHHHHHHhhhccchhH-HHHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcC
Q 017429          126 NTLFGL----SVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (371)
Q Consensus       126 ~~~~~~----~~~~~~~~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~  195 (371)
                      ..+..+    ..+.+.+....++.|++.+...+ ......+..|+++|+++.++.+....+|..+|+.+.+.+.+
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~  409 (485)
T TIGR00711       335 FYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILT  409 (485)
T ss_pred             HHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            776662    23456666777888998877655 46777788899999999999999999999999999988876

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00901 2A0125 AmpG-related permease

Probab=99.12  E-value=6.8e-10  Score=100.33  Aligned_cols=132  Identities=15%  Similarity=0.128  Sum_probs=101.4

Q ss_pred             HHHHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHH-HHHHHHhHHHHhhhhhcCCchHHHHHHHH
Q 017429           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFM-FGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (371)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~Grr~~l~~~~~~  121 (371)
                      ++...+..++............|.+.+++|.+.++      .+.+.++.. ++..++.+++|++.||+|||+.+..+.++
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~------~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~  284 (356)
T TIGR00901       211 ALLLLLLIVLYKLGDSAATVLTTLFLLDMGFSKEE------IALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIV  284 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            33333344444455555566777777778998888      888777665 57789999999999999999999988888


Q ss_pred             HHHHHHHHHhH-----------HHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhh
Q 017429          122 VVIFNTLFGLS-----------VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWG  180 (371)
Q Consensus       122 ~~~~~~~~~~~-----------~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~  180 (371)
                      .++...+..+.           ++.+.+....++.+++.+...+. .+++.|.+|+++|++.+++.++..+
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       285 QALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             HHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            77766655442           34566777888889998887775 9999999999999999999876543

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.11  E-value=2e-09  Score=98.59  Aligned_cols=120  Identities=12%  Similarity=0.054  Sum_probs=82.8

Q ss_pred             HHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 017429           66 FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLL  145 (371)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~  145 (371)
                      .+.+++|.+..+      .+...+...++..++.++.|++.||+|||+.+.++.++..++.+...+.++.+..+..-.+.
T Consensus       229 ~~~~~~g~~~~~------~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  302 (392)
T PRK10473        229 LLMEQMGFSRGE------YAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLI  302 (392)
T ss_pred             HHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345678888888      89999999999999999999999999999999999988888887777766555444444444


Q ss_pred             hhhccchhHHHHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcC
Q 017429          146 GSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (371)
Q Consensus       146 G~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~  195 (371)
                      +.+.+...+ .....+..|.++|+   +.......++..+++.+++++.+
T Consensus       303 ~~g~~~~~~-~~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~  348 (392)
T PRK10473        303 CAGFSVGFG-VAMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAA  348 (392)
T ss_pred             HHHHHHHhH-HHHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHH
Confidence            443332222 12233444554443   33444456677777777777776

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.11  E-value=1.3e-09  Score=113.51  Aligned_cols=130  Identities=14%  Similarity=0.121  Sum_probs=111.5

Q ss_pred             chhhHH-HHHHhhccccc-cccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHHhHHHHHH
Q 017429           60 LFPFLY-FMIKDFQIAKR-EEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWM  137 (371)
Q Consensus        60 ~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~  137 (371)
                      ....+| ++.+.+|.+.. +      .+++.+...++.++++++.|+++||+++|+++.++.++.+++.++..+..+.+.
T Consensus       251 ~~~~~~~~~~~~~g~s~~~~------~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (1146)
T PRK08633        251 AQANFPAYAKEVLGLDNTFQ------VQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLAS  324 (1146)
T ss_pred             HHHhhHHHHHHHhCCCcHHH------HHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHH
Confidence            344455 44567888887 7      899999999999999999999999999999999988888888888888888888


Q ss_pred             HHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcC
Q 017429          138 AVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (371)
Q Consensus       138 ~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~  195 (371)
                      +++..++.|++.+...+. .+++.+..|++.|++++++.+....+|.++++.+++.+..
T Consensus       325 ~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~  383 (1146)
T PRK08633        325 VLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG  383 (1146)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888889999988877665 8999999999999999999999999999888888877653

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.10  E-value=1.8e-09  Score=98.61  Aligned_cols=123  Identities=19%  Similarity=0.251  Sum_probs=91.6

Q ss_pred             hhhHHHH-HHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHHhH-----HH
Q 017429           61 FPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS-----VN  134 (371)
Q Consensus        61 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~  134 (371)
                      ....|.+ .+++|.++.+      .+++.+...++..++.++.|++.||+|||+.+..+..+..++.+++...     ++
T Consensus       226 ~~~~~~~~~~~~g~~~~~------~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (385)
T TIGR00710       226 FSGAPFVYIDIMGVSPSV------FGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGS  299 (385)
T ss_pred             HHcChHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence            3344544 4578888888      9999999999999999999999999999999988887777766655543     23


Q ss_pred             HHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhh-hHHhHHHhhh
Q 017429          135 FWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWG-IGLIIGPALG  190 (371)
Q Consensus       135 ~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~-~g~~~g~~i~  190 (371)
                      ...++...++.|++.+...+. .....|..| ++|+++.++.+.... +|.+.+|.++
T Consensus       300 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~  356 (385)
T TIGR00710       300 WAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS  356 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555567778877776665 777788776 578999998876554 4566666554

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.10  E-value=3.6e-09  Score=98.12  Aligned_cols=149  Identities=18%  Similarity=0.211  Sum_probs=121.8

Q ss_pred             hHHHHHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHH
Q 017429           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (371)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~  120 (371)
                      +.+..+....++............+++.++.--++..      .+.+..+..++..++.+++++++||+|+|+.+..+.+
T Consensus       225 r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~~------~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~  298 (428)
T PF13347_consen  225 RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNEGL------ISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLL  298 (428)
T ss_pred             chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCchh------hHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHH
Confidence            4455566666666677676677777666654333345      7788888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhHH--HHHHHHHHHHHHhhhccchhHH-HHHHhhhccc-------cchhhhhHhhhhhhhhHHhHHHhhh
Q 017429          121 SVVIFNTLFGLSV--NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFRE-------EHQALGLSTVSTAWGIGLIIGPALG  190 (371)
Q Consensus       121 ~~~~~~~~~~~~~--~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~g~~i~  190 (371)
                      +.+++.++..+.+  +.+.+++..++.|++.+...+. .++++|..+.       ++.|...+..+....+|..+++.+.
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~  378 (428)
T PF13347_consen  299 LAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIV  378 (428)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHH
Confidence            9999998888775  8999999999999998887775 9999998873       3457888888999999999999999


Q ss_pred             hhhcC
Q 017429          191 GFLAQ  195 (371)
Q Consensus       191 ~~l~~  195 (371)
                      +.+.+
T Consensus       379 g~~l~  383 (428)
T PF13347_consen  379 GLLLA  383 (428)
T ss_pred             HHHHH
Confidence            98876

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.10  E-value=3.5e-10  Score=101.84  Aligned_cols=132  Identities=20%  Similarity=0.255  Sum_probs=107.5

Q ss_pred             HHHhhcccccchhhHHHH-HHhhccc-cccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHH
Q 017429           50 VLCTALPISSLFPFLYFM-IKDFQIA-KREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNT  127 (371)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~  127 (371)
                      .++............|.+ .+++|.+ ..+      .+...+...++..++.++.|++.||+|+|+..........+..+
T Consensus       215 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  288 (352)
T PF07690_consen  215 FFLFFFVFSGFSFFLPLYLQEVLGFSGPSQ------AGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGAL  288 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCHHHHCCTHHH------HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHhhcccchhhhhccCCCHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence            333333444467777776 7888998 677      88889999999999999999999999998888887777777666


Q ss_pred             HHHhH---HHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHH
Q 017429          128 LFGLS---VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGP  187 (371)
Q Consensus       128 ~~~~~---~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~  187 (371)
                      .....   ++....+...++.|++.+...+. ..++.|..|+++|+++.++.+...++|..+||
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  289 GLLLLPFSSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHCCSHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            65543   34567777788899988887775 99999999999999999999999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=99.08  E-value=6.9e-08  Score=86.35  Aligned_cols=178  Identities=18%  Similarity=0.173  Sum_probs=129.8

Q ss_pred             HHHHHHHHHHhhcccccchhhH-HHHHHh-hccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHH
Q 017429           43 LFSIWIIVLCTALPISSLFPFL-YFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (371)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~  120 (371)
                      ...+++..|+..+--  .-|++ |++.+. .|++++|.     ..-+.-...-.+....++...+.|..|.|++++++.+
T Consensus         7 ~~llc~~gf~~~frP--sEPfl~~yL~~~~kn~T~~qv-----~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~   79 (412)
T PF01770_consen    7 TLLLCLFGFFKEFRP--SEPFLTPYLTGPDKNFTEEQV-----NNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQAL   79 (412)
T ss_pred             HHHHHHHHHHHhcCC--CCccchHHHcCCccCCCHHHH-----HHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            334444444444422  23544 444444 78887762     2233444455667788899999999999999999999


Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHhhhccchhHHHHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCC
Q 017429          121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY  200 (371)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~  200 (371)
                      ...+...+..+.++...+-+.-+..|++.+.-.+-++++-...|+++-.++.+...++..+|..++.++|-.+...    
T Consensus        80 ~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~----  155 (412)
T PF01770_consen   80 SYIITWLLLLFGTSVLAMQLMQFFYGLATAAEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSF----  155 (412)
T ss_pred             HHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----
Confidence            9999999999999999999999999998777555588888888999888999988888889999998888877651    


Q ss_pred             CCcccccccccCccchhHHHHHHHHHHHHHHHHhhcccccc
Q 017429          201 PNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLH  241 (371)
Q Consensus       201 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  241 (371)
                                +..++....++......++++..+++|..++
T Consensus       156 ----------~~~sy~~L~~isl~~~~~a~~~~~fLP~~~~  186 (412)
T PF01770_consen  156 ----------GGVSYFQLNYISLASVSLALLIALFLPMPKR  186 (412)
T ss_pred             ----------cCCCHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence                      1334555555555555566667778887654

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.08  E-value=4.8e-09  Score=94.92  Aligned_cols=144  Identities=12%  Similarity=0.049  Sum_probs=95.4

Q ss_pred             hHHHHHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCc---hHHHH
Q 017429           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRK---PVIIM  117 (371)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr---~~l~~  117 (371)
                      +.++.+.+..++...........+|.+.++.|.+. +      .+....+..+...++   .++++||.+||   +....
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~-~------~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~  261 (368)
T TIGR00903       192 KDLWIIGAILGFGVALFDNLAIWLEAALRPAGLED-I------AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIR  261 (368)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCh-H------HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHH
Confidence            44555666666666666677788998888877664 3      445455555444444   46777776543   33332


Q ss_pred             -HHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhccchhH-HHHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhc
Q 017429          118 -GTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (371)
Q Consensus       118 -~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~  194 (371)
                       ..++.++.....+...+....++.-.+.+++.....+ .+++.+|.+|++.|+++.|+.+....+|+..+|.+.+.+.
T Consensus       262 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~  340 (368)
T TIGR00903       262 AAALLIAAFFLALAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFI  340 (368)
T ss_pred             HHHHHHHHHHHHHHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHh
Confidence             3333344444444444444444455556665555545 4889999999999999999999999999999999888776

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.08  E-value=1.5e-09  Score=102.52  Aligned_cols=141  Identities=16%  Similarity=0.123  Sum_probs=112.0

Q ss_pred             HHHHhhcccccchhhHHHH-HHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHH
Q 017429           49 IVLCTALPISSLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNT  127 (371)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~  127 (371)
                      ..+...........+.|.+ ++.+|.+..+      .|+......++..++.++.|++.||+|+|+.+..+.++.+++..
T Consensus       267 ~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~------ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~  340 (495)
T PRK14995        267 MAMTAMITLVGFELLMAQELQFVHGLSPLE------AGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFY  340 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHH
Confidence            3333333333344555644 4557999988      99999999999999999999999999999999988888877766


Q ss_pred             HHHhH---HHHHHHHHHHHHHhhhccchhH-HHHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcC
Q 017429          128 LFGLS---VNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (371)
Q Consensus       128 ~~~~~---~~~~~~~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~  195 (371)
                      +....   ++.+......++.|++.|...+ ....+.+..|+++++.+.++.+....+|..+|+.+.+.+.+
T Consensus       341 ~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        341 GLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS  412 (495)
T ss_pred             HHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55432   3555666778889999887766 47788888999999999999999999999999999988865

>PRK11043 putative transporter; Provisional

Probab=99.06  E-value=4.5e-09  Score=96.63  Aligned_cols=128  Identities=11%  Similarity=0.027  Sum_probs=94.6

Q ss_pred             hhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHH---h--HHHH
Q 017429           61 FPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFG---L--SVNF  135 (371)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~--~~~~  135 (371)
                      ....|.+.+++|.+..+      .++......++..++.++.+++.||+|+|+.+....+..+++.+...   .  .++.
T Consensus       223 ~~~~p~~~~~~g~s~~~------~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (401)
T PRK11043        223 LTGSPFILEQMGYSPAD------IGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSL  296 (401)
T ss_pred             HHHhHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcH
Confidence            44567777888998888      88888888888899999999999999999877665554444433221   1  2344


Q ss_pred             HHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcC
Q 017429          136 WMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (371)
Q Consensus       136 ~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~  195 (371)
                      +.+++...+.|++.+...+. .....|..| ++|+++.++.+.....+...++.+.+.+.+
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~  356 (401)
T PRK11043        297 VPLLIPFCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIS  356 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            55555566777777766664 666667665 579999999988878888888888888876

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.05  E-value=1e-08  Score=93.96  Aligned_cols=122  Identities=13%  Similarity=0.095  Sum_probs=98.7

Q ss_pred             HHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 017429           66 FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLL  145 (371)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~  145 (371)
                      ...+.+|.++.+      .|++.+...++..+++++.+++.||.++|+++..+.. .++..+...+.++++...+..++.
T Consensus       231 ~~~~~lg~s~~~------~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~  303 (393)
T PRK11195        231 WAPVALGITLNQ------PAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQHSLLPAYPLLILI  303 (393)
T ss_pred             HHHHHcCCChhH------HHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHH
Confidence            445568999888      9999999999999999999999999999988887753 344444555667777777777888


Q ss_pred             hhhccchhH-HHHHHhhhccccc-hhhhhHhhhhhhhhHHhHHHhhhhhhc
Q 017429          146 GSLNGLLGP-IKAYACEIFREEH-QALGLSTVSTAWGIGLIIGPALGGFLA  194 (371)
Q Consensus       146 G~~~~~~~~-~~~~~~~~~~~~~-r~~~~~~~~~~~~~g~~~g~~i~~~l~  194 (371)
                      |++.+...+ ..+.+.|..|++. +|++.++.+....+|..++..+.+.+.
T Consensus       304 G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~  354 (393)
T PRK11195        304 GALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLV  354 (393)
T ss_pred             HHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            998887666 4777777766554 799999999999999999999988664

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.04  E-value=2.5e-09  Score=111.29  Aligned_cols=144  Identities=13%  Similarity=0.067  Sum_probs=112.0

Q ss_pred             HHHHHHHhhcccccchhhHHHHH-HhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHH
Q 017429           46 IWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (371)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~  124 (371)
                      ..+..++..+.........|.+. +.+|.+..+      .|++.+++.++.++++++.|+++|+.++++.+..+.++.++
T Consensus       230 ~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~------~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~  303 (1140)
T PRK06814        230 AILGISWFWLVGAVVLSQLPLLAKETLGGDENV------ATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGL  303 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHH------HHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHH
Confidence            33333333333344445666555 457888888      99999999999999999999999988877776666665555


Q ss_pred             HHHHHHhH--------------------HHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHH
Q 017429          125 FNTLFGLS--------------------VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGL  183 (371)
Q Consensus       125 ~~~~~~~~--------------------~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~  183 (371)
                      +.+...+.                    .+.+.+++..++.|++.+...+. .+++.+.+|++.||+++|..++...+|.
T Consensus       304 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~  383 (1140)
T PRK06814        304 FGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFM  383 (1140)
T ss_pred             HHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHH
Confidence            55444332                    56677788888899988887764 9999999999999999999999999999


Q ss_pred             hHHHhhhhhhcC
Q 017429          184 IIGPALGGFLAQ  195 (371)
Q Consensus       184 ~~g~~i~~~l~~  195 (371)
                      .+++++.+.+.+
T Consensus       384 ~ig~~~~g~l~~  395 (1140)
T PRK06814        384 VAGTIILALLQA  395 (1140)
T ss_pred             HHHHHHHHHHHH
Confidence            999999998874

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.04  E-value=7.6e-09  Score=95.02  Aligned_cols=147  Identities=20%  Similarity=0.147  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHH
Q 017429           42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (371)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~  121 (371)
                      ..+.+++..++....+......+|.+.++ ..+...      ......+..+...+..+++|+++||+|+|+++.++.+.
T Consensus       253 ~~Wllslly~~tFG~fvg~s~~lp~~~~~-~~~~~~------~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~  325 (462)
T PRK15034        253 HLWLLSLLYLATFGSFIGFSAGFAMLAKT-QFPDVN------ILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIF  325 (462)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHH-HcChHH------HHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHH
Confidence            34545555555554444455566766544 223222      22223445577788899999999999999999998887


Q ss_pred             HHHHHHHHHh-H-----HHHHHHHHHHHHHhhhccchhH-HHHHHhhhccc---------------------cchhhhhH
Q 017429          122 VVIFNTLFGL-S-----VNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFRE---------------------EHQALGLS  173 (371)
Q Consensus       122 ~~~~~~~~~~-~-----~~~~~~~~~r~l~G~~~~~~~~-~~~~~~~~~~~---------------------~~r~~~~~  173 (371)
                      ..++...... .     .+++.+.+..+...++.|.-.. +..++.+.+|+                     ++-|.+.|
T Consensus       326 ~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G  405 (462)
T PRK15034        326 MAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALG  405 (462)
T ss_pred             HHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHH
Confidence            7766543222 1     2455555555444455554433 47777777764                     14567788


Q ss_pred             hhhhhhhhHHhHHHhhhhhhcC
Q 017429          174 TVSTAWGIGLIIGPALGGFLAQ  195 (371)
Q Consensus       174 ~~~~~~~~g~~~g~~i~~~l~~  195 (371)
                      +.....++|+.+-|.+-+...+
T Consensus       406 ~v~a~G~~Ggf~~p~~~g~~~~  427 (462)
T PRK15034        406 FISAIGAVGGFFIPQAFGMSLN  427 (462)
T ss_pred             HHHHHHHcccchhhHHHHHHHH
Confidence            8888888888888987777766

>PRK10133 L-fucose transporter; Provisional

Probab=99.03  E-value=4.3e-09  Score=97.63  Aligned_cols=125  Identities=11%  Similarity=0.053  Sum_probs=96.4

Q ss_pred             hhHHHH-H-HhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 017429           62 PFLYFM-I-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAV  139 (371)
Q Consensus        62 ~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~  139 (371)
                      .+.+.+ . +.+|.++.+      .++....+.++..++.++.|++.||+|||+++..+.++.++..++..+.++.. .+
T Consensus       279 ~~~~~~l~~~~~g~s~~~------ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~  351 (438)
T PRK10133        279 SYLIRYAVEEIPGMTAGF------AANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-GL  351 (438)
T ss_pred             HHHHHHHhhhcCCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HH
Confidence            344433 3 467999998      99999999999999999999999999999999988877776666555544432 24


Q ss_pred             HHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcC
Q 017429          140 LTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (371)
Q Consensus       140 ~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~  195 (371)
                      ..-.+.|++.+...|. .+...|..|++ .+.+.++... ..+|+.++|.+.|.+.+
T Consensus       352 ~~~~l~glg~~~i~P~~~s~a~~~~~~~-~~~as~l~~~-~~~g~~~~~~i~G~l~~  406 (438)
T PRK10133        352 IALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIVM-TIIGGGIVTPVMGFVSD  406 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcccchh-hccchhHHhH-HhccchHHHHHHHHHHH
Confidence            5567789998888885 88888887654 5666776654 44678888899999887

>PRK09848 glucuronide transporter; Provisional

Probab=99.03  E-value=1.1e-09  Score=102.19  Aligned_cols=147  Identities=16%  Similarity=0.141  Sum_probs=104.3

Q ss_pred             HHHHHHHHHHhhcccccchhhHHHHHH-hhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHH
Q 017429           43 LFSIWIIVLCTALPISSLFPFLYFMIK-DFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (371)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~  121 (371)
                      +....+..++............|.+.+ .+|.+...      .++......++.+++.++.+++.||+|+|+.+.++.++
T Consensus       230 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~  303 (448)
T PRK09848        230 LFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLF------TVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALL  303 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            333333333333333333344444433 35554433      44444444667788999999999999999999999988


Q ss_pred             HHHHHHHHHhH--HHHHHHHHHHHHHhhhccchhHH-HHHHhhhcccc-------chhhhhHhhhhhhhhHHhHHHhhhh
Q 017429          122 VVIFNTLFGLS--VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREE-------HQALGLSTVSTAWGIGLIIGPALGG  191 (371)
Q Consensus       122 ~~~~~~~~~~~--~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~-------~r~~~~~~~~~~~~~g~~~g~~i~~  191 (371)
                      .+++.+...+.  .+.+.+++..++.|+|.+...+. .+..+|..|.+       ++|...++.+....+|..+|+.+.+
T Consensus       304 ~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g  383 (448)
T PRK09848        304 GTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPA  383 (448)
T ss_pred             HHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            88877766654  35666777778889988887775 88888888754       3588889999999999999999999


Q ss_pred             hhcC
Q 017429          192 FLAQ  195 (371)
Q Consensus       192 ~l~~  195 (371)
                      .+.+
T Consensus       384 ~~l~  387 (448)
T PRK09848        384 FILG  387 (448)
T ss_pred             HHHH
Confidence            8876

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.03  E-value=2.7e-09  Score=100.21  Aligned_cols=149  Identities=11%  Similarity=0.047  Sum_probs=103.3

Q ss_pred             hHHHHHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHH
Q 017429           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (371)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~  120 (371)
                      +.+..+....++............+++.+...-+.+.      .+++.+...++.+++.+++++++||+|+|+.+.++.+
T Consensus       231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~~~~~------~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~  304 (473)
T PRK10429        231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVIGDADL------FPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASI  304 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            3344333444444444444444444444443333334      6667777778889999999999999999999998887


Q ss_pred             HHHHHHHHHHh-----HHHHHHHHHHHHHHhhhccchhHH-HHHHhhhcc-------ccchhhhhHhhhhhhhhHHhHHH
Q 017429          121 SVVIFNTLFGL-----SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFR-------EEHQALGLSTVSTAWGIGLIIGP  187 (371)
Q Consensus       121 ~~~~~~~~~~~-----~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~-------~~~r~~~~~~~~~~~~~g~~~g~  187 (371)
                      +.+++.+....     ..+.+.+++.-++.|++.+...+. .++++|..+       .+..|..++......-+|..+++
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~  384 (473)
T PRK10429        305 FPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAA  384 (473)
T ss_pred             HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHH
Confidence            76665554432     345666667777888887777775 889999866       33345577888888999999999


Q ss_pred             hhhhhhcC
Q 017429          188 ALGGFLAQ  195 (371)
Q Consensus       188 ~i~~~l~~  195 (371)
                      .+.|++.+
T Consensus       385 ~i~g~~l~  392 (473)
T PRK10429        385 FFIGVVLG  392 (473)
T ss_pred             HHHHHHHH
Confidence            99999887

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.98  E-value=1.9e-07  Score=89.81  Aligned_cols=159  Identities=15%  Similarity=0.143  Sum_probs=113.0

Q ss_pred             chhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhh-cCCchHHHHHHHHHHHHHHHHHhHHH----
Q 017429           60 LFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR-YGRKPVIIMGTASVVIFNTLFGLSVN----  134 (371)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~----  134 (371)
                      ...+..++.+.+|.+.++      ...+...+....-+..+++|.++|+ +||++.+.++.++..++..+.++...    
T Consensus         7 ~aiLvlYl~~~lg~~~~~------A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~   80 (654)
T TIGR00926         7 RTILVLYFLNFLGFSEST------STVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSG   80 (654)
T ss_pred             HHHHHHHHHHHcCCcHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccc
Confidence            334445667778888877      6777777777777889999999996 59999999999999999887776321    


Q ss_pred             ----HHHHHHHHHHHhhhccchhHH-HHHHhhhcccc---chhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCCCCcccc
Q 017429          135 ----FWMAVLTRFLLGSLNGLLGPI-KAYACEIFREE---HQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSS  206 (371)
Q Consensus       135 ----~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~---~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~~~~~g~  206 (371)
                          ....+++-.+..+|.|..-++ .+...|.++++   +|.+.+.++..+.++|+.+++.+.+++.+..+.+..    
T Consensus        81 ~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~----  156 (654)
T TIGR00926        81 HPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGC----  156 (654)
T ss_pred             cchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc----
Confidence                123455556666777777775 99999998754   366788888999999999999999888642111000    


Q ss_pred             cccccCccchhHHHHHHHHHHHHHHHH
Q 017429          207 ESLFGKFPYFLPCLCISLFAFGVTIAA  233 (371)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (371)
                           ..+|...+.+.++..+++++..
T Consensus       157 -----~~~~~~aF~i~~i~m~ia~lvf  178 (654)
T TIGR00926       157 -----QDCYPLAFGVPAILMILALIVF  178 (654)
T ss_pred             -----CcchHHHHHHHHHHHHHHHHHH
Confidence                 2346666666666655554443

>PRK09669 putative symporter YagG; Provisional

Probab=98.94  E-value=5.1e-09  Score=97.58  Aligned_cols=112  Identities=19%  Similarity=0.262  Sum_probs=86.7

Q ss_pred             hHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHH-Hh-HHHHHHHHHHHHHHhhhccchhHH-HHHHh
Q 017429           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLF-GL-SVNFWMAVLTRFLLGSLNGLLGPI-KAYAC  160 (371)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~-~~-~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~  160 (371)
                      .+.+.....++.+++.+++++++||+|+|+.+..+.++.++..+.. .. .++.+.+++..++.|++.+...+. .++++
T Consensus       266 ~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~a  345 (444)
T PRK09669        266 ATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFS  345 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455566677888899999999999999999998877665443322 22 356777788888899998887776 99999


Q ss_pred             hhccc-------cchhhhhHhhhhhhhhHHhHHHhhhhhhcC
Q 017429          161 EIFRE-------EHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (371)
Q Consensus       161 ~~~~~-------~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~  195 (371)
                      |..+.       +..|...+..+.+..+|..+|+.++|.+.+
T Consensus       346 d~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~  387 (444)
T PRK09669        346 DVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILA  387 (444)
T ss_pred             hhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            98862       223556788888889999999999999887

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.93  E-value=3e-08  Score=90.32  Aligned_cols=123  Identities=17%  Similarity=0.173  Sum_probs=82.5

Q ss_pred             hhHH-HHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHH---h-HHHHH
Q 017429           62 PFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFG---L-SVNFW  136 (371)
Q Consensus        62 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~-~~~~~  136 (371)
                      ...| .+.+++|.+..+      .++..+...++..++.++.|++.||+|||+.+..+.++..+..+...   . ..+.+
T Consensus       215 ~~~~~~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (377)
T PRK11102        215 TAGPFVYIELNGVSPQN------FGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFW  288 (377)
T ss_pred             HcCHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            3334 445668998888      99999999999999999999999999999999888765444332222   1 22344


Q ss_pred             HHHHHHHHHhhhccchhH-HHHHHhhhccccchhhhhHhhhh-hhhhHHhHHHhhhh
Q 017429          137 MAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVST-AWGIGLIIGPALGG  191 (371)
Q Consensus       137 ~~~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~-~~~~g~~~g~~i~~  191 (371)
                      .+.+.-.+.+.+.+.... ...++.|..| ++|+++.+..+. ...+|..+++.+++
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~  344 (377)
T PRK11102        289 ALVVGVAAFVGCVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSL  344 (377)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            444444444433444343 3566777766 788998888644 34566666666654

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.89  E-value=1.4e-08  Score=93.86  Aligned_cols=173  Identities=14%  Similarity=0.229  Sum_probs=116.3

Q ss_pred             HHHHHHHHHHhhcccccchhhHHHHH-HhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCc---------
Q 017429           43 LFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRK---------  112 (371)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr---------  112 (371)
                      ++.+++..+........+..+.|.+. +-+|.+-.+      .|++.++..+...+..+++|.++||.-+|         
T Consensus       260 vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~------~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rk  333 (466)
T KOG2532|consen  260 VWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRE------TGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRK  333 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHH
Confidence            45677888888888888889999655 568999999      99999999999999999999999988652         


Q ss_pred             hHHHHHHHHHHHHHHHHHhHHH--H-HHHHHHHHHHhhhccchhH-HHHHHhhhccccchhhhhHhhhhhhhhHHhHHHh
Q 017429          113 PVIIMGTASVVIFNTLFGLSVN--F-WMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPA  188 (371)
Q Consensus       113 ~~l~~~~~~~~~~~~~~~~~~~--~-~~~~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~  188 (371)
                      ..-.++....+++.+..++.++  . ..+++.-+..++ .|...+ ...-..|. .+++-+..+|+.+....+.+.++|.
T Consensus       334 ifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~-~g~~~~Gf~~~~~~~-apq~a~~l~g~~~~~~~~~~~~~P~  411 (466)
T KOG2532|consen  334 IFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGL-SGFNISGFYKNHQDI-APQHAGFVMGIINFVGALAGFIAPL  411 (466)
T ss_pred             HHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHH-cccchhhhHhhhhhc-cchHHHHHHHHHHHHHHHHHHHHHH
Confidence            2223444555555555555442  2 122222222222 222222 12222222 4566889999999999999999999


Q ss_pred             hhhhhcCcCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhhc
Q 017429          189 LGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL  236 (371)
Q Consensus       189 i~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (371)
                      +.+.+.....             +..|+..|++.+++.++..+.+.+.
T Consensus       412 ~vg~~~~~~t-------------~~eW~~VF~i~a~i~~~~~i~f~~f  446 (466)
T KOG2532|consen  412 LVGIIVTDNT-------------REEWRIVFLIAAGILIVGNIIFLFF  446 (466)
T ss_pred             heeeEeCCCC-------------HHHHHHHHHHHHHHHHHhchheeEe
Confidence            9999985110             4457777788777776665444333

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.87  E-value=8.1e-09  Score=93.42  Aligned_cols=142  Identities=21%  Similarity=0.322  Sum_probs=120.8

Q ss_pred             HHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHH
Q 017429           48 IIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNT  127 (371)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~  127 (371)
                      +...+.+...+.+..++--..+|.+..+.-      .|........+-++.-++.+++..|+|+-+++..++.+..+=.+
T Consensus       378 ~~av~mG~g~~lv~tFLfWHled~~~~~~L------fGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~  451 (618)
T KOG3762|consen  378 FVAVVMGAGVGLVFTFLFWHLEDLGGIKTL------FGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFL  451 (618)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCccee------eeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHH
Confidence            334444555555666666667888866666      77767777778888889999999999999999999999999999


Q ss_pred             HHHhHHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhh-hhhhhhHHhHHHhhhhhhcC
Q 017429          128 LFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTV-STAWGIGLIIGPALGGFLAQ  195 (371)
Q Consensus       128 ~~~~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~-~~~~~~g~~~g~~i~~~l~~  195 (371)
                      ......|+|..+-.-+++|+..+.++.+ .+|++...||+.|..+.++. ....++|-.+|.+|||.+.+
T Consensus       452 ~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~  521 (618)
T KOG3762|consen  452 YYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVE  521 (618)
T ss_pred             HHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhhe
Confidence            9999999999999999999998888775 99999999999999999998 55678999999999999998

>TIGR00788 fbt folate/biopterin transporter

Probab=98.86  E-value=1.1e-08  Score=95.66  Aligned_cols=156  Identities=10%  Similarity=-0.038  Sum_probs=116.3

Q ss_pred             HhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHHhH----------HHHHHH
Q 017429           69 KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS----------VNFWMA  138 (371)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~----------~~~~~~  138 (371)
                      +.+|.++.+      .|.+.....++.+++....+++.+|++.|+++.++.++.+++.+.....          ++.+.+
T Consensus       281 ~~lG~s~~~------~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~  354 (468)
T TIGR00788       281 QCLPGGPSF------SGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFV  354 (468)
T ss_pred             ccCCCCcch------hhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeee
Confidence            468999998      9999999999999999999999999999999999999988877554311          233344


Q ss_pred             HHHHHHHhhhccchhH-HHHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCCCCcccccccccCccchh
Q 017429          139 VLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFL  217 (371)
Q Consensus       139 ~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~~~~~g~~~~~~~~~~~~  217 (371)
                      +..-++.+++.+.... ...++.+..|++.+++..++.++..++|..+++.+++.+.+..+.....  .     +.-|. 
T Consensus       355 ~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~--~-----~~~~~-  426 (468)
T TIGR00788       355 LGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDN--S-----NNLWL-  426 (468)
T ss_pred             eehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc--c-----cchHH-
Confidence            5556777887666555 5999999999999999999999999999999999999998843211101  1     11122 


Q ss_pred             HHHHHHHHHHHHHHHHhhccc
Q 017429          218 PCLCISLFAFGVTIAAFWLPE  238 (371)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~e  238 (371)
                      ...+..+..++.+...+++|+
T Consensus       427 ~i~i~~~~~l~~l~~~~llP~  447 (468)
T TIGR00788       427 LILGHSLAPLLPLPLLHLLPR  447 (468)
T ss_pred             HHHHHHHHHHHHHHHHHhCCC
Confidence            233344444455555567886

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.85  E-value=2.5e-07  Score=80.23  Aligned_cols=149  Identities=17%  Similarity=0.127  Sum_probs=115.6

Q ss_pred             HHHHHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhc-CCchHHHHHHH
Q 017429           42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-GRKPVIIMGTA  120 (371)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-Grr~~l~~~~~  120 (371)
                      .-+.+.+..-++....+.....+|.+..|.|+|..+      .|+..+...+.....++....+++|. .+|+..+....
T Consensus       209 ~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~------aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~  282 (395)
T COG2807         209 LAWQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAE------AGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALL  282 (395)
T ss_pred             hhHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHH------hhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence            345566666677777888889999999999999999      99999999999999999999999976 47777777788


Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccc-cchhhhhHhhhhhhhhHHhHHHhhhhhhcCcC
Q 017429          121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFRE-EHQALGLSTVSTAWGIGLIIGPALGGFLAQPA  197 (371)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~-~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~  197 (371)
                      +..++.+.+.+.+....++- -++.|++.|...+. ..++.+..+. ++-++-.++.+....+=..+||.+.|++-|..
T Consensus       283 ~~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~  360 (395)
T COG2807         283 LMLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDAT  360 (395)
T ss_pred             HHHHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhc
Confidence            88888877777654433333 48899998887775 8888887664 44445555656655555677999999999953

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.84  E-value=1.5e-07  Score=82.65  Aligned_cols=140  Identities=31%  Similarity=0.490  Sum_probs=113.0

Q ss_pred             HHHhhcccccchhhHHHHHHhhcccc--ccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHH
Q 017429           50 VLCTALPISSLFPFLYFMIKDFQIAK--REEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNT  127 (371)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~  127 (371)
                      .+.............+.+..+++.+.  ..      .++..+.+.++..++.++.|.++||+|||+.+..+.....++.+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~   84 (338)
T COG0477          11 ALLLGLDLGLLSPALPLLLSTLSLSSGRLL------YGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTL   84 (338)
T ss_pred             HHHHHHhcchHHHHHHHHHHHcCCCchhHH------HHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHH
Confidence            33344556666677777777777665  35      78999999999999999999999999999888888776555556


Q ss_pred             HHHhHHH--HHHHHHHHHHHhhhccchhHH-HHHHhhhccc-cchhhhhHhhhh-hhhhHHhHHHhhhhhhcC
Q 017429          128 LFGLSVN--FWMAVLTRFLLGSLNGLLGPI-KAYACEIFRE-EHQALGLSTVST-AWGIGLIIGPALGGFLAQ  195 (371)
Q Consensus       128 ~~~~~~~--~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~-~~r~~~~~~~~~-~~~~g~~~g~~i~~~l~~  195 (371)
                      ...+..+  .+.+++.|+..|++.+...+. .+++.|..|+ ++|+...+.... ...+|..++|.+++.+..
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (338)
T COG0477          85 LLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLG  157 (338)
T ss_pred             HHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666555  889999999999988877775 9999999998 678888888877 578888999988888876

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.82  E-value=2.5e-11  Score=113.40  Aligned_cols=165  Identities=19%  Similarity=0.272  Sum_probs=103.9

Q ss_pred             ccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHH--h--
Q 017429           56 PISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFG--L--  131 (371)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~--~--  131 (371)
                      +......+.+.+.+..+.+...     ....   ...+...++.+....+.||+|||+.++.+.++.+++.+..+  .  
T Consensus       268 g~~~~~~~~~~i~~~~~~~~~~-----~~~~---~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~  339 (451)
T PF00083_consen  268 GINFIFYYSPSIFENAGISNSF-----LATL---ILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFL  339 (451)
T ss_pred             cccccccccccccccccccccc-----cccc---cccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3344445556677777766551     0222   22344456667777999999999999999888887776664  1  


Q ss_pred             -HHH----HHHHHHHHHHHhhh-ccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCCCCcc
Q 017429          132 -SVN----FWMAVLTRFLLGSL-NGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLF  204 (371)
Q Consensus       132 -~~~----~~~~~~~r~l~G~~-~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~~~~~  204 (371)
                       .++    -...++.-.+...+ .....+. ..+.+|.+|.+.|.++.++......++..++|.+...+.+.        
T Consensus       340 ~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~--------  411 (451)
T PF00083_consen  340 GVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNN--------  411 (451)
T ss_pred             ccccccccccccceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccc--------
Confidence             122    11122222222222 2123444 78889999999999999999888888888888887777662        


Q ss_pred             cccccccCcc-chhHHHHHHHHHHHHHHHHhhccccccCCC
Q 017429          205 SSESLFGKFP-YFLPCLCISLFAFGVTIAAFWLPETLHRHN  244 (371)
Q Consensus       205 g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  244 (371)
                              .+ +....+..++..+..++..+++||+.++..
T Consensus       412 --------~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l  444 (451)
T PF00083_consen  412 --------LGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTL  444 (451)
T ss_pred             --------ccccccchhhHHHHHHHHhheeEEEeeCCCCCH
Confidence                    22 222224444444455567888999986543

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.81  E-value=8.5e-08  Score=88.26  Aligned_cols=141  Identities=12%  Similarity=-0.036  Sum_probs=97.5

Q ss_pred             HHHHHHHhhcccccchhhHHHHHHhhccc--cccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHH
Q 017429           46 IWIIVLCTALPISSLFPFLYFMIKDFQIA--KREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVV  123 (371)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~  123 (371)
                      ..+..++...........++.+.++.+..  ...      .+...+.+..+..++.++++++.||+++|+++.+..++..
T Consensus       237 ~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~------a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~  310 (410)
T TIGR00885       237 GVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGF------AANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGM  310 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence            33344444433334456666666554332  222      3445666667788999999999999999999999988888


Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcC
Q 017429          124 IFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (371)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~  195 (371)
                      +..++....++... ...-++.|++.+...|. .+...+..+++.+....++...  .+|+.+.|.+.|.+.|
T Consensus       311 ~~~ll~~~~~~~~~-~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~--~~Gga~~p~l~G~~~d  380 (410)
T TIGR00885       311 ALCLGSIFAGGHVG-LYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMA--IIGGGIVPPLQGFIID  380 (410)
T ss_pred             HHHHHHHHcCChHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH--HhccchHHHHHHHHHH
Confidence            88887777666443 45556677766666675 8888898887765444444332  3999999999999998

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.80  E-value=1.7e-08  Score=91.44  Aligned_cols=118  Identities=19%  Similarity=0.147  Sum_probs=83.8

Q ss_pred             ccchhhHHHHH-HhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHHh--HH-
Q 017429           58 SSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGL--SV-  133 (371)
Q Consensus        58 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~--~~-  133 (371)
                      .......|.+. +.+|.+..+      .++..+...+...++.++.|+++||+|||+.+..+......+..+..+  .. 
T Consensus       242 ~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (366)
T TIGR00886       242 LGVSSIFAMFFKDQFGLSKVT------AGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSP  315 (366)
T ss_pred             HHHHHHHHHHHHHHcCCcHHH------HHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCc
Confidence            34445566554 567888888      898889999999999999999999999998887776666655554443  22 


Q ss_pred             -HHHHHHHHHHHHhhhccchhH-HHHHHhhhccccchhhhhHhhhhhhhhH
Q 017429          134 -NFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIG  182 (371)
Q Consensus       134 -~~~~~~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g  182 (371)
                       +.+.+++...+.+++.|.... ....++|..| ++|+.+.|+.+...++|
T Consensus       316 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       316 LSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG  365 (366)
T ss_pred             chHHHHHHHHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence             455544555555555554434 4677778776 68999999987766655

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.79  E-value=2.7e-09  Score=94.68  Aligned_cols=195  Identities=14%  Similarity=0.021  Sum_probs=134.6

Q ss_pred             hHHHHHHHHHHHhhcccccchhhHHHHHHhhccccccccc--hhhhHHHHHH-HHHHHHHHhHHHHhhhhhcCCchHHHH
Q 017429           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDI--GSYAGYVGSS-FMFGRALTSVFWGLVADRYGRKPVIIM  117 (371)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~g~l~dr~Grr~~l~~  117 (371)
                      +.++..+..+|+.-+..+..+.....+.+..++.+.+...  -........+ ...+++.+-++...+.|++|||+..+.
T Consensus       304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~  383 (538)
T KOG0252|consen  304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM  383 (538)
T ss_pred             HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence            3444566677777777888888888999988887665111  0001111122 223344566778889999999999999


Q ss_pred             HHHHHHHHHHHHHhHHH----HHHHHHHHHHHhh-h-ccchhHHHHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhh
Q 017429          118 GTASVVIFNTLFGLSVN----FWMAVLTRFLLGS-L-NGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGG  191 (371)
Q Consensus       118 ~~~~~~~~~~~~~~~~~----~~~~~~~r~l~G~-~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~  191 (371)
                      +.+++.+..+..+...|    -.-+++...+..+ + .|.......+-+|.+|.+.|+..-|+..++.-.|+++|...-.
T Consensus       384 GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~  463 (538)
T KOG0252|consen  384 GFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFL  463 (538)
T ss_pred             hHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhh
Confidence            99999999888887655    1223333333333 2 2333334677889999999999999999999999999988888


Q ss_pred             hhcCcCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhhccccccCCCCC
Q 017429          192 FLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDD  246 (371)
Q Consensus       192 ~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~  246 (371)
                      .+.+..  ++.         ..+.+..+++.+.+..+..+..+++||+.++..++
T Consensus       464 ~~t~~~--yp~---------~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~~~lee  507 (538)
T KOG0252|consen  464 YLTDHN--YPP---------NIGVRNVFIILAGCMLLGILFTLLIPETKGKSLEE  507 (538)
T ss_pred             Hhhhcc--CCc---------cccchHHHHHHHHHHHHhHheeEEeecccccCHHH
Confidence            887632  221         33455566888888888888888999988765543

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.79  E-value=1.4e-07  Score=86.56  Aligned_cols=125  Identities=14%  Similarity=0.072  Sum_probs=89.7

Q ss_pred             HHHHH-HhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHH-HHHHHHHHHHHh--HHHHHHHH
Q 017429           64 LYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT-ASVVIFNTLFGL--SVNFWMAV  139 (371)
Q Consensus        64 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~-~~~~~~~~~~~~--~~~~~~~~  139 (371)
                      .+.+. +.+|.+..+      .++......++..+++++.+++.||++++....... ....+.......  ..+.+.+.
T Consensus       230 ~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (394)
T PRK11652        230 SGVLMGAVLGLSSMT------VSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLL  303 (394)
T ss_pred             ChHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence            34344 448888887      888888888999999999999999998433222222 222222122221  23556677


Q ss_pred             HHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcC
Q 017429          140 LTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (371)
Q Consensus       140 ~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~  195 (371)
                      +..++.|++.+...+. ..+..|.+| ++++...++.+....+|..+++.+++.+..
T Consensus       304 ~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~  359 (394)
T PRK11652        304 VPAALFFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQ  359 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            7788888888877775 888888886 578999999999999999999999988865

>PRK11462 putative transporter; Provisional

Probab=98.78  E-value=6.3e-08  Score=90.46  Aligned_cols=112  Identities=14%  Similarity=0.186  Sum_probs=76.7

Q ss_pred             hHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHhhhccchhHH-HHHHh
Q 017429           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS--VNFWMAVLTRFLLGSLNGLLGPI-KAYAC  160 (371)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~r~l~G~~~~~~~~~-~~~~~  160 (371)
                      .+.+...+.++.+++.+++++++||+|+|+.+..+..+..+..++..+.  .+...+++.-++.|++.+...+. .++++
T Consensus       265 ~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~a  344 (460)
T PRK11462        265 FVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMS  344 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5566778888889999999999999999998876555444433333222  22333444556667766665554 77788


Q ss_pred             hhcc-------ccchhhhhHhhhhhhhhHHhHHHhhhhhhcC
Q 017429          161 EIFR-------EEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (371)
Q Consensus       161 ~~~~-------~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~  195 (371)
                      |..+       .+..|...+......-+|..+++.++|.+.+
T Consensus       345 d~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~  386 (460)
T PRK11462        345 DTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLA  386 (460)
T ss_pred             HhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7766       2333444566667888899999999988876

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=98.75  E-value=3.2e-06  Score=77.95  Aligned_cols=288  Identities=9%  Similarity=0.122  Sum_probs=157.5

Q ss_pred             hhHHHHHHHHHHHhhcccccchhhHHHHHHhhcccc-----ccccchhhhHHHHHHHHHHHHHH-hHHHHhhhhhcCCch
Q 017429           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAK-----REEDIGSYAGYVGSSFMFGRALT-SVFWGLVADRYGRKP  113 (371)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~l~dr~Grr~  113 (371)
                      .+.++...+..|+....++    .+-.+.+.+.++.     +.      +.++-+...+...+. .++.+++++|++|++
T Consensus         6 ~~k~~~~~l~fF~il~~Y~----iLR~lKD~lvv~~~~~gae~------i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~   75 (472)
T TIGR00769         6 LKKFLPLFLMFFCILFNYT----ILRDTKDTLVVTAKGSGAEI------IPFLKTWVVVPMAVIFMLIYTKLSNILSKEA   75 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHH----HHHhhhhheeecccCCchhh------HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence            3455555555555555443    3445556665532     34      777777776666665 889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhH-----H--------------------------HHHHHHHHHHHHhhhccchhH-H-HHHHh
Q 017429          114 VIIMGTASVVIFNTLFGLS-----V--------------------------NFWMAVLTRFLLGSLNGLLGP-I-KAYAC  160 (371)
Q Consensus       114 ~l~~~~~~~~~~~~~~~~~-----~--------------------------~~~~~~~~r~l~G~~~~~~~~-~-~~~~~  160 (371)
                      ++-+....+.....++++.     +                          +.|...+..+...+-+..... . +.+++
T Consensus        76 lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fan  155 (472)
T TIGR00769        76 LFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFAN  155 (472)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9888777666666555543     1                          122222333334443333333 5 89999


Q ss_pred             hhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCCCCcccccccccCccch--hHHHHHHHHHHHHHHHHhhccc
Q 017429          161 EIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYF--LPCLCISLFAFGVTIAAFWLPE  238 (371)
Q Consensus       161 ~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~e  238 (371)
                      |.++.++-.|-.++.+.+.++|..+++.+..++.+...+.+...+      .++..  ..+.+.+++.++.+....++.+
T Consensus       156 di~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~i~~~~~~~~~~~~~~l~~  229 (472)
T TIGR00769       156 QITTIDEAKRFYALFGLGANVALIFSGRTIKYFSKLRASLGPGVD------GWHVSLKNLMVIVICSGLAIILLYWWVNR  229 (472)
T ss_pred             hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccC------hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999998887742111100000      11111  1223333333444444444432


Q ss_pred             cccCCCCCCccchhhhhhhhhhhhhhhhhcccCCccccccccccchHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCc
Q 017429          239 TLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGL  318 (371)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (371)
                      ....   +++..+.  ++    ..+.++.+.......+.++++|.++...+...++...........-......      
T Consensus       230 ~~~~---~~~~~~~--~~----~~~k~k~k~~~~es~k~i~~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~------  294 (472)
T TIGR00769       230 NVLT---DPRSYNP--AL----KEKKVKPKMSTMESLKFLVSSPYILDLALLVIAYGISINLVEVTWKSKLKAQ------  294 (472)
T ss_pred             cccC---Cccccch--hh----ccccCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence            2211   1100000  00    0001111222234566788899887766665555444333322222222221      


Q ss_pred             cccchh----hhHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHH
Q 017429          319 NYSTQM----VGEVLAITGFSLLVFQLSLYPFLERILGPIMVARI  359 (371)
Q Consensus       319 ~~s~~~----~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~  359 (371)
                      .-++.+    .|.+....++..++.+. +.+++.+|+|-+....+
T Consensus       295 ~p~~~~~~~f~g~~~~~~gi~tl~~~l-~~~~l~~~~Gw~~~a~i  338 (472)
T TIGR00769       295 YPSPNEYSAFMGDFSTWTGVVSVTMML-LSGNVIRKYGWLTAALI  338 (472)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHH
Confidence            123322    44555566677766675 44899999987754433

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.75  E-value=3.3e-07  Score=85.97  Aligned_cols=112  Identities=15%  Similarity=0.098  Sum_probs=90.6

Q ss_pred             hHHHHHHHHHHHHHHhHHHH----hhhhh-cCCchHH--HHHHHHHHHHHHHHHh---------HHHHHHHHHHHHHHhh
Q 017429           84 AGYVGSSFMFGRALTSVFWG----LVADR-YGRKPVI--IMGTASVVIFNTLFGL---------SVNFWMAVLTRFLLGS  147 (371)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~g----~l~dr-~Grr~~l--~~~~~~~~~~~~~~~~---------~~~~~~~~~~r~l~G~  147 (371)
                      .+++.+...+..++.+++..    ++.|| .+.+...  .+|.++.+++.+..++         ..|+++++...++.++
T Consensus       314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~  393 (475)
T TIGR00924       314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTL  393 (475)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence            66777777777777777755    44554 3334444  6788888888777664         4689999999999999


Q ss_pred             hccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcC
Q 017429          148 LNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (371)
Q Consensus       148 ~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~  195 (371)
                      |.....|. .+++++..|++.|++.+|++..+..+|..+++.+.....+
T Consensus       394 ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~  442 (475)
T TIGR00924       394 GELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAV  442 (475)
T ss_pred             HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999886 9999999999999999999999999999999998887765

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.75  E-value=1.2e-07  Score=86.27  Aligned_cols=148  Identities=12%  Similarity=0.209  Sum_probs=106.2

Q ss_pred             HHHHHHHHHHHhhcccccchhhHHHHHHh-hccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHH
Q 017429           42 ELFSIWIIVLCTALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (371)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~  120 (371)
                      .+..+++..++........+....++.+. +|-++..      ..+.......+.+++.+++.++++|+|+|+++.++.+
T Consensus       237 p~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~------~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~  310 (467)
T COG2211         237 PLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELF------AYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLL  310 (467)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHH------HHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHH
Confidence            34444444445555444444444444322 2333333      5666777777777889999999999999999999999


Q ss_pred             HHHHHHHHHHhHH--HHHHHHHHHHHHhhhccchhHH-HHHHhhhcc-------ccchhhhhHhhhhhhhhHHhHHHhhh
Q 017429          121 SVVIFNTLFGLSV--NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFR-------EEHQALGLSTVSTAWGIGLIIGPALG  190 (371)
Q Consensus       121 ~~~~~~~~~~~~~--~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~-------~~~r~~~~~~~~~~~~~g~~~g~~i~  190 (371)
                      +.+++.++..+.+  +.+.+++..++.+++.+...+. +++++|..+       .|.-|...+......=+|..++..+.
T Consensus       311 ~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~  390 (467)
T COG2211         311 LLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIP  390 (467)
T ss_pred             HHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence            9999998887754  7788888889999998888886 888888764       23335556666667778888888888


Q ss_pred             hhhcC
Q 017429          191 GFLAQ  195 (371)
Q Consensus       191 ~~l~~  195 (371)
                      |+...
T Consensus       391 g~~L~  395 (467)
T COG2211         391 GWILG  395 (467)
T ss_pred             HHHHH
Confidence            87776

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=98.73  E-value=6.2e-06  Score=75.24  Aligned_cols=294  Identities=13%  Similarity=0.115  Sum_probs=156.9

Q ss_pred             HHHHHHHHHhhcccccchhhHHHHHHhhcc-ccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHH
Q 017429           44 FSIWIIVLCTALPISSLFPFLYFMIKDFQI-AKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV  122 (371)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~  122 (371)
                      ..+....++...+.-+.....+.+..+..- +--.      .+...-.-.+..++.++..|.+.||..|.++...+.+.-
T Consensus         5 ~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~------~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Q   78 (432)
T PF06963_consen    5 WRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLP------VSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQ   78 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHH------HHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHH
Confidence            345555566666555555666655555422 2222      334444445667888999999999999999876665433


Q ss_pred             HH----HHHHHHh--H--H----HHHHH---HHHHHHHhhhccchhHHH------HHHhhhc--cccchhhhhHhhhhhh
Q 017429          123 VI----FNTLFGL--S--V----NFWMA---VLTRFLLGSLNGLLGPIK------AYACEIF--REEHQALGLSTVSTAW  179 (371)
Q Consensus       123 ~~----~~~~~~~--~--~----~~~~~---~~~r~l~G~~~~~~~~~~------~~~~~~~--~~~~r~~~~~~~~~~~  179 (371)
                      -+    ++.+...  .  .    +.+..   ++.-.+.|...-....+.      -++..+.  +++.+.+..+...-.-
T Consensus        79 n~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRID  158 (432)
T PF06963_consen   79 NLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRID  158 (432)
T ss_pred             HHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHH
Confidence            22    2222111  1  1    11222   222222222111111111      1222223  3344455555555555


Q ss_pred             hhHHhHHHhhhhhhcCcCCCCCCcccccccccCccchhHHHHHHHHHHHHHHH-Hhhc-------cccccCCCCCCccch
Q 017429          180 GIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWL-------PETLHRHNDDDDSCD  251 (371)
Q Consensus       180 ~~g~~~g~~i~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------~e~~~~~~~~~~~~~  251 (371)
                      .+..+++|++.|.+.+                ..+......+.+...++.+.. ++++       |+-..++..++++.+
T Consensus       159 L~ckllaPl~vG~l~t----------------~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~L~~~~~~~~~~~~  222 (432)
T PF06963_consen  159 LFCKLLAPLFVGLLMT----------------FASPVIAAIFIAGWNLASVFVEYFLLARVYNSVPALAVKKRSSESESS  222 (432)
T ss_pred             HHHHHHHHHHHHHHhh----------------ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhcCCCCCcccccc
Confidence            6788999999999987                445555555555555544432 2222       221111111111111


Q ss_pred             hhhh------hhhhhhhhhhhhcccCCccccccccccchHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhh
Q 017429          252 VSYD------ALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMV  325 (371)
Q Consensus       252 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  325 (371)
                      ...+      ......+...+........++..++.+-+...+ ...+..+.-.++......|+..      .|+++...
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~vflas~-alalLY~TVLsf~~lmt~yl~~------~G~s~~~i  295 (432)
T PF06963_consen  223 SDEESSSESSSDPSILKRLWNPLRTIIRGWRTYFRQPVFLASF-ALALLYFTVLSFGGLMTAYLKS------QGYSPSVI  295 (432)
T ss_pred             ccccccccccchhhHHHHHHHHHHHHhccHHHHHhCHHHHHHH-HHHHHHHHHhcCcHHHHHHHHH------CCCCHHHH
Confidence            0000      000000011111122234566667766554444 4444444456677777778877      59999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHhhhhc
Q 017429          326 GEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVNFEHS  367 (371)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~  367 (371)
                      |.+-+...+.++.+. ++.+++.+|+|..+.-..+.....++
T Consensus       296 gi~R~~gav~Gl~gT-~~~p~l~~riGlvr~G~~~l~~q~~~  336 (432)
T PF06963_consen  296 GIFRGLGAVFGLLGT-WVYPWLMKRIGLVRAGLWSLWWQWVC  336 (432)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHhcchhhHHHHHHHHHHH
Confidence            999999999999988 58999999999988776666654433

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.67  E-value=7.6e-08  Score=84.18  Aligned_cols=157  Identities=18%  Similarity=0.195  Sum_probs=115.0

Q ss_pred             HhhcccccchhhHHH-HHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcC--CchHHHHHHHHHHHHHHH
Q 017429           52 CTALPISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYG--RKPVIIMGTASVVIFNTL  128 (371)
Q Consensus        52 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G--rr~~l~~~~~~~~~~~~~  128 (371)
                      ...+...+.-|.++. +.+.+..+.-+      .|+..--..+.+.++..+.|.++||++  |...-..+.+..++.+..
T Consensus       281 ~~n~~lafLePtlslwm~e~m~~p~w~------~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~  354 (464)
T KOG3764|consen  281 FSNSSLAFLEPTLSLWMLETMFTPGWE------VGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGP  354 (464)
T ss_pred             hccchHHHhCcccHHHHHHhccCCCcc------eeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhch
Confidence            344455566677765 55666655546      787777788899999999999999999  544445566666777778


Q ss_pred             HHhHHHHHHHHHHHHHHhhhccchhHH-HHHHhhhc---ccc---chhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCCC
Q 017429          129 FGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIF---REE---HQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYP  201 (371)
Q Consensus       129 ~~~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~---~~~---~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~~  201 (371)
                      ..+++++.++++-++..+++.+..... ...+.++.   ..+   ..|...++...++.+|..+||.++|.+.+      
T Consensus       355 iP~~~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~------  428 (464)
T KOG3764|consen  355 IPFATSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVE------  428 (464)
T ss_pred             hHhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchhee------
Confidence            888999999999998888876665443 44444443   333   45788899999999999999999999998      


Q ss_pred             CcccccccccCccchhHHHHHHHHHHHHH
Q 017429          202 NLFSSESLFGKFPYFLPCLCISLFAFGVT  230 (371)
Q Consensus       202 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  230 (371)
                                .+++.+...+.++..++-.
T Consensus       429 ----------~iGF~wl~~iig~~n~iya  447 (464)
T KOG3764|consen  429 ----------AIGFEWLMTIIGILNLIYA  447 (464)
T ss_pred             ----------ehhHHHHHHHHHHHHHHHH
Confidence                      6666666566665555543

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.65  E-value=9.6e-07  Score=83.87  Aligned_cols=181  Identities=13%  Similarity=0.115  Sum_probs=112.4

Q ss_pred             HHHHHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHH
Q 017429           42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (371)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~  121 (371)
                      .+..+.+..+.+..+......+.+.+.+..|.+...       .+...+..+...++..+...+.||+|||+.++.+...
T Consensus       296 ~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-------~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~  368 (513)
T KOG0254|consen  296 LIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-------FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAG  368 (513)
T ss_pred             HHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-------HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHH
Confidence            333555666666677777788888888888876542       2334445556667777779999999999999999999


Q ss_pred             HHHHHHHHHhHHHH-----------HHHHH---HHHHHhhhccchhHHHHHHhhhccccchhhhhHhhhhhhhhHHhHHH
Q 017429          122 VVIFNTLFGLSVNF-----------WMAVL---TRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGP  187 (371)
Q Consensus       122 ~~~~~~~~~~~~~~-----------~~~~~---~r~l~G~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~  187 (371)
                      +.++.++.+.....           ..+.+   .-++..+..+.....+.+.+|.+|.+.|+++.++......+...+-.
T Consensus       369 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~  448 (513)
T KOG0254|consen  369 MSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLIS  448 (513)
T ss_pred             HHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHH
Confidence            99998877753211           11111   11222333333333478999999999999999887665555444333


Q ss_pred             hhhhhhcCcCCCCCCcccccccccCccchhHHHHHHHHHHHHH-HHHhhccccccCCC
Q 017429          188 ALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHN  244 (371)
Q Consensus       188 ~i~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~  244 (371)
                      .....+...       .++       + ...+.+.+++.+... ...+++||+..+..
T Consensus       449 ~~~~~~~~~-------~~~-------~-~~f~~f~~~~~~~~~~fv~~~~pETkg~sl  491 (513)
T KOG0254|consen  449 FFFPFITEA-------LGI-------G-GTFGYFGGICLLSLIIFVFFFVPETKGLTL  491 (513)
T ss_pred             HHHHHHHHh-------ccc-------c-chHHHHHHHHHHHHHHHheEEcccCCCCcH
Confidence            333333320       000       1 111234444444444 57788999876543

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.64  E-value=6.7e-07  Score=78.74  Aligned_cols=147  Identities=16%  Similarity=0.127  Sum_probs=116.6

Q ss_pred             hhHHHHHHHHHHHhhcccccchhhHHHHHHh-hccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHH
Q 017429           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (371)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~  118 (371)
                      .+.+..-.++.|+...........++.+..+ .|.++.+      .+...+.+..+.++|..++-++..|+...|++.+.
T Consensus       235 ~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~------aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~  308 (422)
T COG0738         235 NKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQ------AAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFY  308 (422)
T ss_pred             ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence            3445556666777777777778888877777 7888888      89999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcC
Q 017429          119 TASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (371)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~  195 (371)
                      .++..+.++..+++++...++. -++.|+..+...|. .+...+..|+  .....+..-....+|+++-|.+.|++.|
T Consensus       309 a~~~ill~~~~~l~~g~v~~~~-l~~ig~F~simfPTIfslal~~l~~--~ts~~s~~l~maivGGAiiP~l~G~i~d  383 (422)
T COG0738         309 ALIAILLLLAVALIGGVVALYA-LFLIGLFNSIMFPTIFSLALKNLGE--HTSVGSGLLVMAIVGGAIIPPLQGVIAD  383 (422)
T ss_pred             HHHHHHHHHHHHHhcChHHHHH-HHHHHHHhHHHHHHHHHHHHhccCc--cccccceeeeeheecchHHHHHHHHHHH
Confidence            9888888888888888655443 46678877777775 8988888883  2334444455667899999999999999

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.63  E-value=1.1e-06  Score=68.25  Aligned_cols=106  Identities=20%  Similarity=0.184  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhccchhHH-HHHHhhhcccc
Q 017429           88 GSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREE  166 (371)
Q Consensus        88 ~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~  166 (371)
                      .++......+++++.+.+.+++|.|+.++++.++..+..... +-++.+.++.+-++.|++.+..++. ..++.+..+++
T Consensus        43 lai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~  121 (156)
T PF05978_consen   43 LAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEE  121 (156)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHH
Confidence            455666677888999999999999999999999988766554 3556788899999999999999997 89999999999


Q ss_pred             chhhhhHhhhhhhhhHHhHHHhhhhhhc
Q 017429          167 HQALGLSTVSTAWGIGLIIGPALGGFLA  194 (371)
Q Consensus       167 ~r~~~~~~~~~~~~~g~~~g~~i~~~l~  194 (371)
                      .|++..+++......+.++|.++.-++.
T Consensus       122 ~~~~~~~ifw~i~~~s~i~G~~~~~~~~  149 (156)
T PF05978_consen  122 TIGRNTGIFWAIFQSSLIFGNLFLFFIF  149 (156)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999988888888888877765554

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.62  E-value=1.3e-06  Score=77.61  Aligned_cols=170  Identities=18%  Similarity=0.132  Sum_probs=128.1

Q ss_pred             hhcccccchhhH-HHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhh-hcCCchHHHHHHHHHHHHHHHHH
Q 017429           53 TALPISSLFPFL-YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD-RYGRKPVIIMGTASVVIFNTLFG  130 (371)
Q Consensus        53 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-r~Grr~~l~~~~~~~~~~~~~~~  130 (371)
                      ..++..+.-.++ |+=.+-||++..+      ...++.....|..++....|++.. |.++++.-.+++.+..++..+..
T Consensus       220 ~t~a~~~QD~iLEPygg~Vfgmsv~e------TT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii  293 (403)
T PF03209_consen  220 GTLAFFMQDVILEPYGGEVFGMSVGE------TTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALII  293 (403)
T ss_pred             HHHHHHhhHHHcCCchhHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHH
Confidence            344444455556 4445779999999      889999999999999999998887 67788888888888877766544


Q ss_pred             h---HHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCCCCcccc
Q 017429          131 L---SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSS  206 (371)
Q Consensus       131 ~---~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~~~~~g~  206 (371)
                      +   ..+.+.+...-++.|++.|.+.+. .+.+.|+..+++.|..+|.+.....++..+|..++|.+.|........   
T Consensus       294 ~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~---  370 (403)
T PF03209_consen  294 LAGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGN---  370 (403)
T ss_pred             HHHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---
Confidence            4   457888889999999999999886 889999999999999999999999999999999999988743211100   


Q ss_pred             cccccCccchhHHHHHHHHHHHHHHHHh
Q 017429          207 ESLFGKFPYFLPCLCISLFAFGVTIAAF  234 (371)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (371)
                      +   ...+|...|.+.++..++++....
T Consensus       371 ~---~~~aY~~VF~lEa~ll~~a~~ll~  395 (403)
T PF03209_consen  371 S---PALAYGVVFALEAVLLLAALVLLG  395 (403)
T ss_pred             C---cchHHHHHHHHHHHHHHHHHHHHH
Confidence            0   033455666666666555554443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.59  E-value=1.8e-07  Score=63.78  Aligned_cols=80  Identities=16%  Similarity=0.278  Sum_probs=73.4

Q ss_pred             hhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHHhH
Q 017429           53 TALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS  132 (371)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~  132 (371)
                      .++++..+.|.+|.+.+|.++|.++      .|++.++..+|+.+|.+...++.++..+++.+..+.+...+..+.+++.
T Consensus         4 mGigRFayTplLP~M~~~~~ls~~~------ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~   77 (85)
T PF06779_consen    4 MGIGRFAYTPLLPLMQADGGLSLSQ------AGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT   77 (85)
T ss_pred             hhhHHHHHHhHhHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            3556677899999999999999999      9999999999999999999999999888999999999999999999998


Q ss_pred             HHHHHH
Q 017429          133 VNFWMA  138 (371)
Q Consensus       133 ~~~~~~  138 (371)
                      ++++.+
T Consensus        78 ~~~~~w   83 (85)
T PF06779_consen   78 HSFWLW   83 (85)
T ss_pred             hchHHH
Confidence            887654

Note that many members are hypothetical proteins.

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.58  E-value=2.9e-06  Score=77.38  Aligned_cols=107  Identities=19%  Similarity=0.114  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhccchhHH-HHHHhhhcccc
Q 017429           88 GSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREE  166 (371)
Q Consensus        88 ~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~  166 (371)
                      .++......+++++.+.+.|+.|.|+.++++..+.....+.+.+. |-+-++....+.|+|.+..+.. ..+++|..+++
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~-N~y~~yfssallG~Gaallw~GqG~ylt~~st~~  134 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFP-NSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE  134 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhc-chHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence            677778888999999999999999999999999998887776654 4567788999999999998886 89999999999


Q ss_pred             chhhhhHhhhhhhhhHHhHHHhhhhhhcC
Q 017429          167 HQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (371)
Q Consensus       167 ~r~~~~~~~~~~~~~g~~~g~~i~~~l~~  195 (371)
                      .+.+..++.......+.++|..+...+..
T Consensus       135 tie~Nisi~Wai~~~~li~Ggi~l~~~~~  163 (461)
T KOG3098|consen  135 TIERNISIFWAIGQSSLIIGGIILFIYFQ  163 (461)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHhheeeeE
Confidence            99999999888888888877666555543

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.54  E-value=2.4e-06  Score=80.79  Aligned_cols=108  Identities=8%  Similarity=-0.041  Sum_probs=86.0

Q ss_pred             hHHHHHHHHHHHHHHhHHH----HhhhhhcCCchHHHHHHHHHHHHHHHHHhHHH---------HHHHHHHHHHHhhhcc
Q 017429           84 AGYVGSSFMFGRALTSVFW----GLVADRYGRKPVIIMGTASVVIFNTLFGLSVN---------FWMAVLTRFLLGSLNG  150 (371)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~----g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~---------~~~~~~~r~l~G~~~~  150 (371)
                      .+++.++..+...+..++.    +++.||++..+.+.+|.++.+++.+..+...+         .++++..+++.|++++
T Consensus       318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~  397 (500)
T PRK09584        318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL  397 (500)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence            4566666665555555555    66777777778889999999999888777655         4678899999999999


Q ss_pred             chhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhh
Q 017429          151 LLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGG  191 (371)
Q Consensus       151 ~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~  191 (371)
                      ...|. ..++.+..|++.|++.+|.+..+..+|..++..+.+
T Consensus       398 ~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~  439 (500)
T PRK09584        398 MISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVAN  439 (500)
T ss_pred             HHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99997 999999999999999999888777777777666654

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.52  E-value=4.6e-06  Score=77.36  Aligned_cols=185  Identities=15%  Similarity=0.006  Sum_probs=121.6

Q ss_pred             HHHHHHHHHHHhhcccccchhhHHHH-HH-hhcccccccc---ch-hhhHHHHHHHHHHHHHHhHHHHhhhhhcCC-chH
Q 017429           42 ELFSIWIIVLCTALPISSLFPFLYFM-IK-DFQIAKREED---IG-SYAGYVGSSFMFGRALTSVFWGLVADRYGR-KPV  114 (371)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~Gr-r~~  114 (371)
                      .+..+++..++..++...+..+.+++ .+ .|+-++.+++   .+ ..-.+....+.+...+.+++.-++.+|+|+ |++
T Consensus       259 ~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~  338 (477)
T TIGR01301       259 PVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRL  338 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhH
Confidence            34456666776666655444444433 32 3443332211   01 112344444555556777888899999994 777


Q ss_pred             HHHHHHHHHHHHHHHHhHHH---------------------HHHHHHHHHHHhhhccchhHH-HHHHhhhccc--cchhh
Q 017429          115 IIMGTASVVIFNTLFGLSVN---------------------FWMAVLTRFLLGSLNGLLGPI-KAYACEIFRE--EHQAL  170 (371)
Q Consensus       115 l~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~--~~r~~  170 (371)
                      ..++.++.+++.....+.++                     .+..++...+.|+..+..... ++++++..++  ++.|.
T Consensus       339 ~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~  418 (477)
T TIGR01301       339 WGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGL  418 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcc
Confidence            79998888888877775443                     266777788899988887776 9999999985  45599


Q ss_pred             hhHhhhhhhhhHHhHHHhhhhhhcCcCCCCCCcccccccccCccchhHHHHHHHHHHHHH-HHHhhccccc
Q 017429          171 GLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETL  240 (371)
Q Consensus       171 ~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~  240 (371)
                      .+|+.+.+..+.+++..+..|.+.+..++              +-...+.+.++..+++. ...+.+|+++
T Consensus       419 ~mgilN~~I~lpQii~sl~~g~~~~~~g~--------------~~~~~~~~~gv~~~~aa~~~~~~~~~~~  475 (477)
T TIGR01301       419 SMGVLNLAIVIPQIIVSLGSGPWDQLFGG--------------GNLPAFVVGAVAAFVSGLLALILLPRPR  475 (477)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHcCC--------------CCeeHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            99999999999999999888885552221              12233456666666554 4566677654

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.51  E-value=1.9e-06  Score=79.56  Aligned_cols=147  Identities=8%  Similarity=-0.016  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHHhhcccccchhhHHHHHH-hhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHH
Q 017429           42 ELFSIWIIVLCTALPISSLFPFLYFMIK-DFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (371)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~  120 (371)
                      .++...+..++............|.+.+ .+|.+..+      .++.......+..+++.+.+++.++.++++.+.....
T Consensus       219 ~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~------~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~  292 (413)
T PRK15403        219 LFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQ------FAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVP  292 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHH
Confidence            3333333333333333344445575554 56889888      8888877888888888888887755555444333322


Q ss_pred             HHHHHHHHHH-----hHHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhc
Q 017429          121 SVVIFNTLFG-----LSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (371)
Q Consensus       121 ~~~~~~~~~~-----~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~  194 (371)
                      +..++.++..     ..++++..++..++.++|.+...+. .. .+..-....+|++.++.+.....+...++..++++.
T Consensus       293 ~~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~p~~~~-~al~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~  371 (413)
T PRK15403        293 IQLVGLALLIVGNLLWPHVWLWSVLGTSLYAFGIGLIFPTLFR-FTLFSNNLPKGTVSASLNMVILMVMAVSVEIGRWLW  371 (413)
T ss_pred             HHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHhHHHHH-HHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2223322222     1233434566777788887776664 32 222222334788888888888888888888888886


Q ss_pred             C
Q 017429          195 Q  195 (371)
Q Consensus       195 ~  195 (371)
                      .
T Consensus       372 ~  372 (413)
T PRK15403        372 F  372 (413)
T ss_pred             H
Confidence            5

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.47  E-value=5.4e-07  Score=61.05  Aligned_cols=70  Identities=23%  Similarity=0.529  Sum_probs=60.2

Q ss_pred             HHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHH
Q 017429           46 IWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (371)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~  121 (371)
                      +-...++.....+...|++|.+.++.|++..+      +|.+.++..+...++++++|.++||+++++.++....+
T Consensus         5 lk~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~------iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~   74 (77)
T PF12832_consen    5 LKAFYFFYFAALGCLYPFLPLYLKQLGLSPSQ------IGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF   74 (77)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHhhhhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence            33455666677788889999999999999999      99999999999999999999999999998887766544

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.41  E-value=4.6e-06  Score=78.48  Aligned_cols=111  Identities=12%  Similarity=0.069  Sum_probs=89.8

Q ss_pred             hHHHHHHHHHHHHHHhHHHHhhhhhcCCchH-------HHHHHHHHHHHHHHHH-----h-----HHHHHHHHHHHHHHh
Q 017429           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPV-------IIMGTASVVIFNTLFG-----L-----SVNFWMAVLTRFLLG  146 (371)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~-------l~~~~~~~~~~~~~~~-----~-----~~~~~~~~~~r~l~G  146 (371)
                      .+++.+...+..++.+++.+++.||.|+|+.       +.+|.++.+++.+..+     .     ..++++++...++.|
T Consensus       311 ~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g  390 (489)
T PRK10207        311 PVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQS  390 (489)
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHH
Confidence            4556666667777889999999999999874       6777777766654321     1     135777888899999


Q ss_pred             hhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhc
Q 017429          147 SLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (371)
Q Consensus       147 ~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~  194 (371)
                      +|.+...+. ..++.+..|++.++.++|++....++|+.+|..++....
T Consensus       391 ~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~  439 (489)
T PRK10207        391 LGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTA  439 (489)
T ss_pred             HHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999998886 999999999999999999999999999999988887663

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.31  E-value=1.6e-06  Score=80.56  Aligned_cols=142  Identities=13%  Similarity=0.075  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHhhcccccchhhHHHHHHh-hccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhh----cCCchHHH
Q 017429           42 ELFSIWIIVLCTALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR----YGRKPVII  116 (371)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~Grr~~l~  116 (371)
                      .++...++.++.....+.....+|.+.++ .|.+..+      .+.+...+.++.+++.+++|.++||    ..+|....
T Consensus       274 ~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~------a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~  347 (495)
T KOG2533|consen  274 GVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQ------ANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFI  347 (495)
T ss_pred             hHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHH------hccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            34556677778888888889999988888 5588888      8899999999999999999999999    66666666


Q ss_pred             HHHHHHHHHH-HHHHhHHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchh-hhhHhhhhhhhhHHhHHHhh
Q 017429          117 MGTASVVIFN-TLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQA-LGLSTVSTAWGIGLIIGPAL  189 (371)
Q Consensus       117 ~~~~~~~~~~-~~~~~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~-~~~~~~~~~~~~g~~~g~~i  189 (371)
                      ....+..+.. +......+.......-+....+.....++ ....++...++.|. ...+....+.+.++.++|.+
T Consensus       348 ~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~  423 (495)
T KOG2533|consen  348 VFLCLYAIIGAISLLAAAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQL  423 (495)
T ss_pred             HHHHHHHHHHHHHHHhhccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhh
Confidence            6655554433 44333332332222222222334444443 66777766554443 44444444444444444333

>PTZ00207 hypothetical protein; Provisional

Probab=98.30  E-value=1.1e-05  Score=76.51  Aligned_cols=185  Identities=11%  Similarity=0.065  Sum_probs=123.6

Q ss_pred             hhHHHHHHHHHHHhhcccccchhhHHHHHHhh-ccccccccchhhhHH-HHHHHHHHHHHHhHHHHhhhhhcCC------
Q 017429           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDF-QIAKREEDIGSYAGY-VGSSFMFGRALTSVFWGLVADRYGR------  111 (371)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~l~dr~Gr------  111 (371)
                      ..++|.+++..++.......+...+.++.+.+ |.+.+++     ... +.+...++..+|.+..|.+....-+      
T Consensus       352 ~~d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~-----~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r  426 (591)
T PTZ00207        352 TARLWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDA-----LNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDR  426 (591)
T ss_pred             chhHHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCcc-----ceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccc
Confidence            45567777777777766666666677888888 6522221     122 6677777888888888877622111      


Q ss_pred             --chH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHH-
Q 017429          112 --KPV-IIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIG-  186 (371)
Q Consensus       112 --r~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g-  186 (371)
                        |+. +.+..+ +.++.+++++......+++..++.|++.|...++ ...++|+|. ++-|+-..+......+|..+- 
T Consensus       427 ~prt~~l~~~~~-~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n  504 (591)
T PTZ00207        427 VPITIALFIPSV-CIITMLTLFLTLPKAALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLN  504 (591)
T ss_pred             cchhHHHHHHHH-HHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHH
Confidence              122 233333 5566666665544368999999999999998886 999999999 888888888777777877664 


Q ss_pred             HhhhhhhcCcCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHh
Q 017429          187 PALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAF  234 (371)
Q Consensus       187 ~~i~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (371)
                      -.+.|.+.|.--..   .+-....++..++.++++.+..++...+...
T Consensus       505 ~~l~G~~Yd~ea~k---~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~  549 (591)
T PTZ00207        505 RLLYGEWYTQQADK---LGQDVCTERVCVVMPLAFLLGLSFLAFITST  549 (591)
T ss_pred             HHHHHHHHHHHHhh---CCCCeeCCceeeHhHHHHHHHHHHHHHHHHh
Confidence            55677776632110   1222444577789999998888877666543

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=98.26  E-value=1.8e-05  Score=69.16  Aligned_cols=143  Identities=13%  Similarity=0.227  Sum_probs=89.5

Q ss_pred             CChhHHHHHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhh-----hcCCc
Q 017429           38 LPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD-----RYGRK  112 (371)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-----r~Grr  112 (371)
                      ..++.++.+....+++++..+... .+|.+.+.-|+|.++      .+....++.  -..--+.+.++.|     |+|||
T Consensus        28 ~d~~~illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~------~a~fS~ay~--P~sLKllWaPiVDs~y~k~~Grr   98 (510)
T KOG3574|consen   28 GDRSSILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTS------QAIFSFAYW--PFSLKLLWAPIVDSVYSKRFGRR   98 (510)
T ss_pred             hhhhhHHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhh------hhhhhhhhh--HHHHHHHHHhhhHHHHHHhhccc
Confidence            345667778888899999999888 899999988888877      554433322  1234568889999     99999


Q ss_pred             hHHHH-HHHHHHHHHHHHHhH-----------HHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhh
Q 017429          113 PVIIM-GTASVVIFNTLFGLS-----------VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAW  179 (371)
Q Consensus       113 ~~l~~-~~~~~~~~~~~~~~~-----------~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~  179 (371)
                      |.-++ +..+.+..+...+..           ++...+....++.-+..+....+ -.+.-.+..+++-|-+......+.
T Consensus        99 ksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~  178 (510)
T KOG3574|consen   99 KSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQ  178 (510)
T ss_pred             cceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHH
Confidence            87655 334444444444331           23333333445555555555553 666666777777666655555555


Q ss_pred             hhHHhHHHhh
Q 017429          180 GIGLIIGPAL  189 (371)
Q Consensus       180 ~~g~~~g~~i  189 (371)
                      +.|.+++..+
T Consensus       179 ~~GyfL~~~i  188 (510)
T KOG3574|consen  179 TAGYFLGNVV  188 (510)
T ss_pred             hhhHHhhcce
Confidence            5555555444

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.16  E-value=0.0001  Score=70.36  Aligned_cols=143  Identities=19%  Similarity=0.105  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHhhhccc-hhHHHHHHh
Q 017429           85 GYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWM---AVLTRFLLGSLNGL-LGPIKAYAC  160 (371)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~r~l~G~~~~~-~~~~~~~~~  160 (371)
                      .+................+...|++|||.....+.++..++.++.++..+...   ..+...+..++.+. ......+.+
T Consensus       353 ~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (521)
T KOG0255|consen  353 YLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSA  432 (521)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444455666667789999999999999999999999999888654433   33333333334333 344599999


Q ss_pred             hhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCCCCcccccccccCccchhHHHH-HHHHHHHHHHHHhhcccc
Q 017429          161 EIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLC-ISLFAFGVTIAAFWLPET  239 (371)
Q Consensus       161 ~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~e~  239 (371)
                      |.+|...|..+.+.......+|.+++|.+.......               .  ....+.. .....+...+..+++||+
T Consensus       433 el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~---------------~--~~~~~~~~~~~~~l~~~~~~~~lpet  495 (521)
T KOG0255|consen  433 ELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQM---------------F--PLLGLILFGWLALLLGLLSLLLLPET  495 (521)
T ss_pred             hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------------c--ccchHHHHHHHHHHHHHHHHhcCccc
Confidence            999999999999999999999999999987655431               0  1111122 233333344556899999


Q ss_pred             ccCCC
Q 017429          240 LHRHN  244 (371)
Q Consensus       240 ~~~~~  244 (371)
                      .....
T Consensus       496 ~~~~l  500 (521)
T KOG0255|consen  496 KGKPL  500 (521)
T ss_pred             CCCCC
Confidence            87655

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=98.09  E-value=0.00037  Score=62.76  Aligned_cols=135  Identities=17%  Similarity=0.103  Sum_probs=93.9

Q ss_pred             hHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhccchhHH-HHHHhhh
Q 017429           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEI  162 (371)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~  162 (371)
                      .+.+.-+-.+...+..+.+.++.+|+..+.=+.+..++..++.++.+++++.+.-+++-.+.+++.|..... ..+ +..
T Consensus        61 t~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~l-t~~  139 (402)
T PF02487_consen   61 TGAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSL-THF  139 (402)
T ss_pred             chHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHH-HHh
Confidence            445666666777888888889999988655556667788888888899999988888888888888777665 444 446


Q ss_pred             ccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCCCCcccccccccCccchhHHHHHHHHHHHHHHH-Hhhccc
Q 017429          163 FREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPE  238 (371)
Q Consensus       163 ~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e  238 (371)
                      +++    ..++-++.+.+.++++|+..-..+.+ .              ..+.+..++....+.++..+. ++.+|.
T Consensus       140 y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~-~--------------g~s~~~tll~~~~lp~~~~~~~f~~L~~  197 (402)
T PF02487_consen  140 YGK----SSLSAWSSGTGGAGLVGALYYLGLTT-L--------------GLSPRTTLLIMLVLPAIFLLSYFFLLPS  197 (402)
T ss_pred             cCc----cccccccCCcChhhHHHHHHHHHHHH-h--------------CcCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            654    35677888888888888877665554 1              344555556666555544444 334443

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.09  E-value=4.8e-06  Score=69.19  Aligned_cols=107  Identities=17%  Similarity=0.125  Sum_probs=80.9

Q ss_pred             HHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHH
Q 017429           51 LCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFG  130 (371)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~  130 (371)
                      .+...+.....|+..++.++++..+.+      +|.+..+.+-..++...+.|.++||-|||+.-+.-++.+.++++ .-
T Consensus        47 slmmAgDWLQgPYvYyLYstYgFgkG~------IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TK  119 (454)
T KOG4332|consen   47 SLMMAGDWLQGPYVYYLYSTYGFGKGD------IGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TK  119 (454)
T ss_pred             HHHHhhhhhcCceeeeeehhcCccCCc------cceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hh
Confidence            334445566678887888899999999      88877777777788899999999999999986665555554443 23


Q ss_pred             hHHHHHHHHHHHHHHhhhccchhHH--HHHHhhhcc
Q 017429          131 LSVNFWMAVLTRFLLGSLNGLLGPI--KAYACEIFR  164 (371)
Q Consensus       131 ~~~~~~~~~~~r~l~G~~~~~~~~~--~~~~~~~~~  164 (371)
                      .++++-.++++|.+-|+..+....+  .-+++|...
T Consensus       120 hSpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHne  155 (454)
T KOG4332|consen  120 HSPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHNE  155 (454)
T ss_pred             cCCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhh
Confidence            4678889999999999987776554  557777653

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.03  E-value=6.5e-05  Score=69.49  Aligned_cols=124  Identities=20%  Similarity=0.281  Sum_probs=107.3

Q ss_pred             HHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHH-hhhhhcCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 017429           66 FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWG-LVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFL  144 (371)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l  144 (371)
                      +....+++++.+      .+...+.......+++.+.. .+...+|-|+++..|++.-.+...+.+++++.|+++....+
T Consensus       267 yl~~~f~w~~~~------~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~  340 (463)
T KOG2816|consen  267 YLKAKFGWNKKE------FSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVV  340 (463)
T ss_pred             EEeeecCcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHH
Confidence            345678999988      88888888888888888777 77888898999999999999999999999999999999888


Q ss_pred             HhhhccchhHHHHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcC
Q 017429          145 LGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (371)
Q Consensus       145 ~G~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~  195 (371)
                      .++.........+.++-+..++++|+++++.....++...++|.+-+.+..
T Consensus       341 ~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~  391 (463)
T KOG2816|consen  341 VALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFA  391 (463)
T ss_pred             HHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHH
Confidence            887665555569999999999999999999999999999999998887754

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.03  E-value=7.3e-05  Score=70.87  Aligned_cols=195  Identities=18%  Similarity=0.159  Sum_probs=123.8

Q ss_pred             hHHHHHHHHHHHhhcccccchhhHHHHHH-hhccccc---cccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCC-chHH
Q 017429           41 TELFSIWIIVLCTALPISSLFPFLYFMIK-DFQIAKR---EEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGR-KPVI  115 (371)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Gr-r~~l  115 (371)
                      |.+....+..++.++.+.....+.|.... -++-+..   .      .++......++..+++.+.|.+.-+++| |+.+
T Consensus       310 r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~------~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~l  383 (599)
T PF06609_consen  310 RGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITE------IGWISSPVGFGSCAGAVILGLLFSKIRHIKWQL  383 (599)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccce------eehhhhhHHHHHHHHHHHHHHHHHHccchhHHH
Confidence            34444445556666655555556664433 3444332   3      6777788888889999999999999887 5666


Q ss_pred             HHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhh
Q 017429          116 IMGTASVVIFNTLFGL--SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGF  192 (371)
Q Consensus       116 ~~~~~~~~~~~~~~~~--~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~  192 (371)
                      +++.++..+++-+++.  .+|....+..-++.|++.|..... .....-..|+++-+.+.++..+.-.+|+.+|..+..-
T Consensus       384 i~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~  463 (599)
T PF06609_consen  384 IFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNA  463 (599)
T ss_pred             HHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            6776666655444443  345555667778888887776554 5555556788889999999888888887776665433


Q ss_pred             hcCc-------------------------------CCC-------CCCcc---------cccccccCccchhHHHHHHHH
Q 017429          193 LAQP-------------------------------AEK-------YPNLF---------SSESLFGKFPYFLPCLCISLF  225 (371)
Q Consensus       193 l~~~-------------------------------~~~-------~~~~~---------g~~~~~~~~~~~~~~~~~~~~  225 (371)
                      +...                               ..+       .|...         ..+..+ ..+++..++.....
T Consensus       464 I~~n~~~~~l~~~v~~a~~~aglp~~sl~~li~a~~~~~~~a~~~iPGit~~i~~a~~~A~~~aY-a~ay~~V~~~siaF  542 (599)
T PF06609_consen  464 IFTNKLPKELPKYVAPAALAAGLPESSLPALIEALAAGNLEALAAIPGITPEIIAAVVAAFQEAY-AHAYRYVYYSSIAF  542 (599)
T ss_pred             HHHhhhhHhHHHHHHHHHHhcCCChhhHHHHHHHHhccChhHHhhCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            2210                               000       00000         011223 44577778888888


Q ss_pred             HHHHHHHHhhccccccC
Q 017429          226 AFGVTIAAFWLPETLHR  242 (371)
Q Consensus       226 ~~~~~~~~~~~~e~~~~  242 (371)
                      +.++++..+++++..+.
T Consensus       543 G~vaiiaa~fl~d~~~~  559 (599)
T PF06609_consen  543 GVVAIIAALFLGDIDKY  559 (599)
T ss_pred             HHHHHHHHHHcCChHHh
Confidence            88888999999876543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=97.97  E-value=0.00072  Score=62.99  Aligned_cols=246  Identities=15%  Similarity=0.156  Sum_probs=127.8

Q ss_pred             HHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHHhH---------H----------------------HHHHHHHHH
Q 017429           94 GRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS---------V----------------------NFWMAVLTR  142 (371)
Q Consensus        94 ~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---------~----------------------~~~~~~~~r  142 (371)
                      ...+...+..+++++++|.+++-+....+.....++++.         +                      +.|...+..
T Consensus        71 ~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfY  150 (491)
T PF03219_consen   71 VAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFY  150 (491)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHH
Confidence            345567788999999999998877666665555554431         0                      112222233


Q ss_pred             HHHhhhccc-hhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcC-cCCCCCCcccccccccCccchhHH
Q 017429          143 FLLGSLNGL-LGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ-PAEKYPNLFSSESLFGKFPYFLPC  219 (371)
Q Consensus       143 ~l~G~~~~~-~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~-~~~~~~~~~g~~~~~~~~~~~~~~  219 (371)
                      +..-+-+.. .+.. +.+.+|.++.++-.+..+++..+.++|.+++..+...+.+ .....+    .    +...|....
T Consensus       151 v~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~----~----~~~~~~~~l  222 (491)
T PF03219_consen  151 VMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLP----A----GVDAWELSL  222 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc----c----ccccHhHHH
Confidence            333332223 3334 8899999999999999999999999999988888877765 111000    0    011122211


Q ss_pred             ----HHHHHHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhhhhhhhhcccCCccccccccccchHHHHHHHHHHH
Q 017429          220 ----LCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFS  295 (371)
Q Consensus       220 ----~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (371)
                          ....+.+++.+....++.+.........+  +.       ..++.++.+.......+.++++|.+....+...++.
T Consensus       223 ~~l~~~v~~~g~~i~~~~~~~~~~vl~~~~~~~--~~-------~~~kk~k~k~s~~es~k~l~kS~yL~~Ia~lvi~Yg  293 (491)
T PF03219_consen  223 NSLMGIVLILGIVIILLYRYMNKNVLTDPRFYP--SA-------KKKKKKKPKMSLKESFKLLLKSKYLLCIALLVIAYG  293 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccCccccch--hh-------hcccccCCCccHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence                11222222223333333322111000000  00       000001111222345667788888877766666555


Q ss_pred             hhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHH
Q 017429          296 LHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARI  359 (371)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~  359 (371)
                      ....-.....-......+... ..++ .-.|-.....++..++.. ++++.+.+|+|-+....+
T Consensus       294 i~inLvE~~wK~~lk~~~~~~-~~ys-afmG~~~~~tGivtii~~-~l~~~iir~~GW~~~Ali  354 (491)
T PF03219_consen  294 ISINLVEVVWKSQLKQLYPDP-NDYS-AFMGKFSSWTGIVTIIMM-FLSSNIIRRFGWRTAALI  354 (491)
T ss_pred             HHHHHHHHHHHHHHHHHCCCc-hHHH-HHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHH
Confidence            444333333222222221100 1111 224555666777777777 578888999887765544

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=97.85  E-value=0.0034  Score=57.28  Aligned_cols=293  Identities=12%  Similarity=0.116  Sum_probs=152.8

Q ss_pred             ChhHHHHHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHH-HHHHHhHHHHhhhhhcCCchHHHH
Q 017429           39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMF-GRALTSVFWGLVADRYGRKPVIIM  117 (371)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~Grr~~l~~  117 (371)
                      .+++++.+.+..++..+.+    ..+-.+.+.+.++...   ...+.++=+..-+ +.++..++.+++.++..|.+++-.
T Consensus        25 E~~kflpl~Ll~f~I~~ny----~~lR~lKDslvv~~~g---ae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~   97 (509)
T COG3202          25 ELKKFLPLALLFFCILFNY----NLLRSLKDSLVVTRQG---AESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYI   97 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHH----HHHHHhhhheEeecCc---chhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHH
Confidence            3455555555555554443    4445566666665322   1115555555555 567788899999999999999887


Q ss_pred             HHHHHHHHHHHHHhHH---------H-----------H------------HHHHHHHHHHhhhccchhH-H-HHHHhhhc
Q 017429          118 GTASVVIFNTLFGLSV---------N-----------F------------WMAVLTRFLLGSLNGLLGP-I-KAYACEIF  163 (371)
Q Consensus       118 ~~~~~~~~~~~~~~~~---------~-----------~------------~~~~~~r~l~G~~~~~~~~-~-~~~~~~~~  163 (371)
                      -+..+....+++++.-         +           +            |...+...+.=+-...+.. . +....|++
T Consensus        98 ~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeit  177 (509)
T COG3202          98 ILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEIT  177 (509)
T ss_pred             HHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            7777776666666520         1           1            2222222222222223333 4 78899999


Q ss_pred             cccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhhccc----c
Q 017429          164 REEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPE----T  239 (371)
Q Consensus       164 ~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e----~  239 (371)
                      ..++-.|-.++++.+.+++..++..+..++...........-      ....+..+.+.+..+++++....++.+    +
T Consensus       178 t~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~~------~~~~~~~~~vi~~~~~i~~~l~~~~~r~il~~  251 (509)
T COG3202         178 TIEEAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEFK------DLLLQILFIVIVILGIIAILLYRYINRNVLTD  251 (509)
T ss_pred             hHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence            999999999999999999999998888888762211000000      001233334444444444444444322    1


Q ss_pred             ccCCCCCCccchhhhhhhhhhhhhhhhhcccCCccccccccccchHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCcc
Q 017429          240 LHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLN  319 (371)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (371)
                      +....+..+.            ++.++.+..-....+.+.++|.++...+...++.....-.....-.-....+..  .+
T Consensus       252 ~~f~~~~~~k------------k~~~k~k~~~~~s~k~i~~SkyL~~ial~vl~Y~v~inLvE~~wKs~ik~~~~~--~~  317 (509)
T COG3202         252 PLFYLRAKKK------------KKKKKLKLGLIESFKMILRSKYLGAIALLVLAYGVSINLVEGVWKSGIKELYPT--TN  317 (509)
T ss_pred             cchhHHHhcc------------cccccccCcHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcCC--hh
Confidence            1110000000            000000111223456677888877766665555544332222111111111000  01


Q ss_pred             ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHH
Q 017429          320 YSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVAR  358 (371)
Q Consensus       320 ~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~  358 (371)
                      --..-.|......++...+.....++-+.+|.|-....+
T Consensus       318 ~~~~f~~~~~~~tgvv~~v~~~~~~s~~ir~~GW~~~Al  356 (509)
T COG3202         318 EYTAFMGRFQIWTGVVSLVVFLFPGSNLIRRVGWFTGAL  356 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHH
Confidence            011224444566666656666678888888888654433

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.82  E-value=0.00014  Score=63.92  Aligned_cols=121  Identities=14%  Similarity=0.069  Sum_probs=104.0

Q ss_pred             HhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcC--CchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 017429           69 KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYG--RKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLG  146 (371)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G--rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G  146 (371)
                      +.+|.+..+      .|-+.+...+...+.+....+..||..  -+-.+..++.+..-..++...++....+.++..+-.
T Consensus       290 ~rfg~ss~~------~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~s  363 (451)
T KOG2615|consen  290 GRFGYSSMQ------QGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKS  363 (451)
T ss_pred             CccCCChhh------heeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHH
Confidence            678999888      888888888888888888889999887  677777777777777777777888888888888888


Q ss_pred             hhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcC
Q 017429          147 SLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (371)
Q Consensus       147 ~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~  195 (371)
                      +..+...++ ..++....|.++||..+|+..+..+++-++||+++|.+..
T Consensus       364 f~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~  413 (451)
T KOG2615|consen  364 FSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFS  413 (451)
T ss_pred             HHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence            877776665 8889999999999999999999999999999999988765

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.75  E-value=0.00035  Score=47.29  Aligned_cols=72  Identities=17%  Similarity=0.212  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHhh
Q 017429          286 SSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVNF  364 (371)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~  364 (371)
                      ..-..++++.........+++.|..+      .|+++.++|.+.++..+..+++. ++.+.+.||.++++.+......+
T Consensus         4 ~lk~~yf~~f~~~g~~~Pfl~~~~~~------~Gl~~~~iGil~~i~~~~~~~~~-pl~g~laDk~~~~~~~l~~~~~~   75 (77)
T PF12832_consen    4 PLKAFYFFYFAALGCLYPFLPLYLKQ------LGLSPSQIGILSAIRPLIRFLAP-PLWGFLADKFGKRKVILLGSLFM   75 (77)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHhhhh------cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCccHHHHHHHHHH
Confidence            34455666666666777777777765      69999999999999999999998 58899999999998887665543

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=97.56  E-value=0.0033  Score=58.91  Aligned_cols=111  Identities=14%  Similarity=0.092  Sum_probs=83.9

Q ss_pred             hHHHHHHHHHHHHHHhHHHHhhhhhcCC--chH-----HHHHHHHHHHHHHHHHhH---------HHHHHHHHHHHHHhh
Q 017429           84 AGYVGSSFMFGRALTSVFWGLVADRYGR--KPV-----IIMGTASVVIFNTLFGLS---------VNFWMAVLTRFLLGS  147 (371)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~g~l~dr~Gr--r~~-----l~~~~~~~~~~~~~~~~~---------~~~~~~~~~r~l~G~  147 (371)
                      .++..++..+..++.+|+.+++=.|.+|  |..     +.+|+++.+++.+.+.++         .+.+++++..+++++
T Consensus       310 ~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~  389 (493)
T PRK15462        310 TAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGF  389 (493)
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHH
Confidence            6788888888888888887777566532  211     567777777777666432         367888999999999


Q ss_pred             hccchhHH-HHHHhhhccccchhhhhHhhhhh-hhhHHhHHHhhhhhhc
Q 017429          148 LNGLLGPI-KAYACEIFREEHQALGLSTVSTA-WGIGLIIGPALGGFLA  194 (371)
Q Consensus       148 ~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~-~~~g~~~g~~i~~~l~  194 (371)
                      |+-+..|+ .+.+++..|++.|+..+|.+... ..+|..++..+++...
T Consensus       390 gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~  438 (493)
T PRK15462        390 AELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTS  438 (493)
T ss_pred             HHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999997 99999999999999999998663 3567766666666553

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=97.51  E-value=0.00059  Score=62.10  Aligned_cols=108  Identities=16%  Similarity=0.213  Sum_probs=83.3

Q ss_pred             hHHHHHHHHHHHHHHHHHhHH---------HHHHHHHHHHHHhhhccchhHH-HHHHhhhcccc---chhhhhHhhhhhh
Q 017429          113 PVIIMGTASVVIFNTLFGLSV---------NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREE---HQALGLSTVSTAW  179 (371)
Q Consensus       113 ~~l~~~~~~~~~~~~~~~~~~---------~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~---~r~~~~~~~~~~~  179 (371)
                      |.++++.++..+|.++..++.         +...++++..+.++|.|..-+. .++.+|.++++   +|.+.+.+++.+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            567888888888888855432         2357888888999999998885 99999999865   4667788889999


Q ss_pred             hhHHhHHHhhhhhhcCcCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhhc
Q 017429          180 GIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL  236 (371)
Q Consensus       180 ~~g~~~g~~i~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (371)
                      ++|..+++.+.+++.+                +++|...|.+.++..+++++..+.-
T Consensus        82 n~G~~~~~~~~~~i~~----------------~~~~~~~f~i~~~~~~~~~~~f~~~  122 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQ----------------NYGWFLGFGIPAIGMLLALIVFLSG  122 (372)
T ss_dssp             HHHHHHHHHCCCHHHH----------------CS-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred             hhhhHhhcccchhhcc----------------ccchhhhhhHHHHHHHHHHHHHHhC
Confidence            9999999999999987                7778888888777776666655443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=97.41  E-value=0.0051  Score=56.37  Aligned_cols=279  Identities=14%  Similarity=0.131  Sum_probs=129.5

Q ss_pred             HHHHHHHHHhhcccccchhhHHHHHHh--hccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhh-----hcCCchHHH
Q 017429           44 FSIWIIVLCTALPISSLFPFLYFMIKD--FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD-----RYGRKPVII  116 (371)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-----r~Grr~~l~  116 (371)
                      ..+.+..+++++..+.....+|.+.++  -+.|.++      .+...-+.. .+ -.-+++.++.|     |+||||..+
T Consensus         3 ~lL~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q------~~~fSla~~-Pf-SlKlLWaPiVDs~y~~~~GRRKSWi   74 (544)
T PF13000_consen    3 ALLVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQ------QAIFSLASY-PF-SLKLLWAPIVDSVYSKRIGRRKSWI   74 (544)
T ss_pred             eHHHHHHHHcCcccccccccchhhhccccCCCChhH------heeeeeeec-hh-HHHHhhhhhhhhhcccccCCcchhh
Confidence            356677888999988877788988888  7888877      443322210 10 12345555555     899998866


Q ss_pred             HH-HHHHHHHHHHHHhHH------------------------HHHHHHHHHHHHhhhccchhH-HHHHHhhhccccchhh
Q 017429          117 MG-TASVVIFNTLFGLSV------------------------NFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQAL  170 (371)
Q Consensus       117 ~~-~~~~~~~~~~~~~~~------------------------~~~~~~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~r~~  170 (371)
                      +- ..+.++..+..+...                        +...+....++.-+..+.... +-.+.-.+..+++++.
T Consensus        75 iP~Q~l~g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~  154 (544)
T PF13000_consen   75 IPIQYLSGILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGY  154 (544)
T ss_pred             hHHHHHHHHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcch
Confidence            54 344444444333221                        011122222233333333333 2344444556677766


Q ss_pred             hhHhhhhhhhhHHhHHHhhhhhhcCcC--C----CCCCcccccccccCccchhHHHHHHHHHHHHHHHHhhccccccCCC
Q 017429          171 GLSTVSTAWGIGLIIGPALGGFLAQPA--E----KYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHN  244 (371)
Q Consensus       171 ~~~~~~~~~~~g~~~g~~i~~~l~~~~--~----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  244 (371)
                      +..-...+.++|..++..+--.+.+..  .    +.|...|.   . ..+-..- ....+..++.+.+.++-+|.+..+.
T Consensus       155 ASTcqtvG~~~Gyfls~tvFlalns~~f~Nky~r~~p~~~gl---v-tl~~yl~-fwg~~~l~~T~~v~~~k~E~~~~~~  229 (544)
T PF13000_consen  155 ASTCQTVGQTAGYFLSFTVFLALNSPDFCNKYLRSTPSDEGL---V-TLSGYLK-FWGWVFLIVTILVAFFKKEKPHSES  229 (544)
T ss_pred             HHHHHHhHhhhhHHHHHHHHHhhCCHHHHHHhcccCCCCCCe---e-eHHHHHH-HHHHHHHHHHHHHheEeeccccccc
Confidence            655555555555555544433333210  0    01111111   1 0000011 1112222223344455556543221


Q ss_pred             CCC-cc---chhhhhhh--hhhhhh--hhhhcccCC---ccccccccccchHHHHHHHHHHHhhhhhHHHHHHHHhcCCC
Q 017429          245 DDD-DS---CDVSYDAL--ESASAE--VKEEEGREA---TPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPK  313 (371)
Q Consensus       245 ~~~-~~---~~~~~~~~--~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (371)
                      ..+ +.   .+...++.  +....+  ..++.....   +...+++|-|++...++.....-....+.......=+.+  
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Y~~l~~ilkLp~V~~li~ilL~~KigF~a~da~T~LKLlE--  307 (544)
T PF13000_consen  230 LPKIEPINKSDGKSKEISIEYDESDVISTEEILSIKDVYKSLWKILKLPNVQTLIIILLTAKIGFQANDAVTSLKLLE--  307 (544)
T ss_pred             CccccccccccccccccceecccccccchhhhhhHHHHHHHHHHHHcCchHHHHHHHHHHHHhccccchhhhHHHHHH--
Confidence            111 10   00000000  000000  011111111   223456677888887777777766666665555544433  


Q ss_pred             ccCCccccchhhhHHHHHHHHHHHHHHH
Q 017429          314 KLGGLNYSTQMVGEVLAITGFSLLVFQL  341 (371)
Q Consensus       314 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~  341 (371)
                          .|++....+.+..+..=..++...
T Consensus       308 ----kG~~KE~LAl~~li~~P~qii~~~  331 (544)
T PF13000_consen  308 ----KGLSKEDLALLVLIDFPFQIILPY  331 (544)
T ss_pred             ----cCCCHHHhHHHHHHhhhHHHHHHH
Confidence                789888887765554444444443

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=97.37  E-value=0.00083  Score=58.31  Aligned_cols=134  Identities=16%  Similarity=0.115  Sum_probs=96.8

Q ss_pred             HHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhccchhHHHHHHhhhccccchhhhhH
Q 017429           94 GRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLS  173 (371)
Q Consensus        94 ~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~r~~~~~  173 (371)
                      .+.+.-.+.=.+.|-...|++++.-.+.......+..+.++.+.+-+.-+..|...+.-..-++++-+..+++++.++.+
T Consensus        54 SYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tAaEIAYysYIYs~Vd~~~Yqrvt~  133 (433)
T KOG3810|consen   54 SYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATAAEIAYYSYIYSKVDPEMYKRVTG  133 (433)
T ss_pred             HHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHHHHHhhhheeeeecCHHHHHHHHH
Confidence            34455555667899999999998887777777788888889888888888877765554444888888999999999999


Q ss_pred             hhhhhhhhHHhHHHhhhhhhcCcCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhhcccccc
Q 017429          174 TVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLH  241 (371)
Q Consensus       174 ~~~~~~~~g~~~g~~i~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  241 (371)
                      ...++.-.|-..|..++-.+....              ...+...-.+......++.+..+++|..++
T Consensus       134 y~RaA~L~g~~~g~vlaQlLvs~~--------------~~sy~~LN~ISL~~~~ia~~~A~fLP~v~r  187 (433)
T KOG3810|consen  134 YCRAAFLVGKFVGSVLAQLLVSLE--------------TLSYTTLNYISLAEVTIAVLLALFLPRVKR  187 (433)
T ss_pred             HhHHHHHHHhHHHhHHHHHHhhhc--------------ccchhhhchhhHHHHHHHHHHHhhCCCCch
Confidence            998888888888888888877521              222222223444444455666777776653

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.35  E-value=0.0047  Score=55.81  Aligned_cols=107  Identities=17%  Similarity=0.233  Sum_probs=73.9

Q ss_pred             hHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHH--HHHHHHH---HHHhHHHHHHHHHHHHHHhhhccchhH-HHH
Q 017429           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA--SVVIFNT---LFGLSVNFWMAVLTRFLLGSLNGLLGP-IKA  157 (371)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~--~~~~~~~---~~~~~~~~~~~~~~r~l~G~~~~~~~~-~~~  157 (371)
                      .-+....|.+|-+++.--...+  |+  |+..+.+.+  +..+..+   ..-+.++.|..++.-+..|+.+|...+ ...
T Consensus       283 Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~  358 (402)
T PF02487_consen  283 YRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFY  358 (402)
T ss_pred             HHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            6677777887766664432221  34  333333322  2222222   223457888888888999998888777 577


Q ss_pred             HHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhc
Q 017429          158 YACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (371)
Q Consensus       158 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~  194 (371)
                      .+.|-.++++|-.+++....+-++|..++.+++-.+-
T Consensus       359 ~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le  395 (402)
T PF02487_consen  359 RISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE  395 (402)
T ss_pred             HHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            7788889999999999999999999999888876553

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.30  E-value=0.00021  Score=64.20  Aligned_cols=122  Identities=17%  Similarity=0.088  Sum_probs=79.0

Q ss_pred             HhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCC-chHHHHHHHHHHHHHHHHH-hH---HHHHHHHHHHH
Q 017429           69 KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGR-KPVIIMGTASVVIFNTLFG-LS---VNFWMAVLTRF  143 (371)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Gr-r~~l~~~~~~~~~~~~~~~-~~---~~~~~~~~~r~  143 (371)
                      ..-|.+...      .|++.....++.++++...|.+.||.+. |..+++......++..... ..   ...+.++..-.
T Consensus       294 ~~sgY~~~~------aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~  367 (480)
T KOG2563|consen  294 CPSGYEGVF------AGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCG  367 (480)
T ss_pred             ccccCCccc------cchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHH
Confidence            344555555      8999999999999999999999999874 5555555555555532222 11   12344555556


Q ss_pred             HHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCc
Q 017429          144 LLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP  196 (371)
Q Consensus       144 l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~  196 (371)
                      +.|++.....|. ..+-.|..-|..-+...|+.+....+=+++-..+-+.+.+.
T Consensus       368 ~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~  421 (480)
T KOG2563|consen  368 LLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAED  421 (480)
T ss_pred             HHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhc
Confidence            677766666665 77777765444455567777666555555556666666663

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=97.29  E-value=0.0021  Score=58.14  Aligned_cols=116  Identities=15%  Similarity=0.149  Sum_probs=70.1

Q ss_pred             hHHHHHHHHHHHHHHhHHHHhhhhhcC----CchHHHHHHHHHHHH---HHH----HH-hHHHHHHHHHHHHHHhhhccc
Q 017429           84 AGYVGSSFMFGRALTSVFWGLVADRYG----RKPVIIMGTASVVIF---NTL----FG-LSVNFWMAVLTRFLLGSLNGL  151 (371)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~g~l~dr~G----rr~~l~~~~~~~~~~---~~~----~~-~~~~~~~~~~~r~l~G~~~~~  151 (371)
                      ..++..+...+..+|.+++|.++||+-    +-....+..+..+.+   .+.    .. .+.+...+....++.|.....
T Consensus       285 ~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~g~~~~~  364 (493)
T KOG1330|consen  285 TLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLVGETISW  364 (493)
T ss_pred             chhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Confidence            556677778888999999999999843    212222222222221   111    11 123333444445556654333


Q ss_pred             -hhHH-HHHHhhhccccchhhhhHhhhhh-hhhHHhHHHhhhhhhcCcCCC
Q 017429          152 -LGPI-KAYACEIFREEHQALGLSTVSTA-WGIGLIIGPALGGFLAQPAEK  199 (371)
Q Consensus       152 -~~~~-~~~~~~~~~~~~r~~~~~~~~~~-~~~g~~~g~~i~~~l~~~~~~  199 (371)
                       .... ..+..|+.|+++|..+.++-... ..+|..-+|.+-|.+.+...+
T Consensus       365 ~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l~g  415 (493)
T KOG1330|consen  365 FNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKLRG  415 (493)
T ss_pred             cccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHhhC
Confidence             2333 66788899999999999987544 445667777788999886433

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=97.20  E-value=0.017  Score=55.22  Aligned_cols=150  Identities=13%  Similarity=0.081  Sum_probs=102.6

Q ss_pred             hhHHHHHHHHHHHhhccc-ccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhc-CCchHHHH
Q 017429           40 ITELFSIWIIVLCTALPI-SSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-GRKPVIIM  117 (371)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-Grr~~l~~  117 (371)
                      |+....+.....+..+.. +...+.+.++.++++.+...      +.-..+.+.-......+.++.++|.| ||-+.+.+
T Consensus        36 ~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~------aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~  109 (571)
T KOG1237|consen   36 WLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGG------AANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINI  109 (571)
T ss_pred             hHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHH------HHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            343333333333333333 34466777888899988876      66677777777778889999999975 89999999


Q ss_pred             HHHHHHHHHHHHHhHHH-------------------------HHHHHHHHHHHhhhccchhHH-HHHHhhhcc---ccc-
Q 017429          118 GTASVVIFNTLFGLSVN-------------------------FWMAVLTRFLLGSLNGLLGPI-KAYACEIFR---EEH-  167 (371)
Q Consensus       118 ~~~~~~~~~~~~~~~~~-------------------------~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~---~~~-  167 (371)
                      +.++..++..+..+...                         ...++.+.-+..+|.|..-++ .++-+|.++   +++ 
T Consensus       110 ~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~  189 (571)
T KOG1237|consen  110 GSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEV  189 (571)
T ss_pred             HHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchh
Confidence            99988888655543211                         124555555666787777775 888899988   322 


Q ss_pred             hh--hhhHhhhhhhhhHHhHHHhhhhhhcC
Q 017429          168 QA--LGLSTVSTAWGIGLIIGPALGGFLAQ  195 (371)
Q Consensus       168 r~--~~~~~~~~~~~~g~~~g~~i~~~l~~  195 (371)
                      +.  ..+.++....++|..++-.+-.+.-+
T Consensus       190 ~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~  219 (571)
T KOG1237|consen  190 KGIPSFFNWFYFSQNGGALLAQTVLVYIQD  219 (571)
T ss_pred             hCcccchhHHHHHHHHHHHHHHHHHHhhhh
Confidence            22  56677788888888888777766655

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.18  E-value=0.00069  Score=62.81  Aligned_cols=150  Identities=15%  Similarity=0.164  Sum_probs=97.8

Q ss_pred             hHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHHh-H---------HHHHHHHHHHHHHhhhccc-h
Q 017429           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGL-S---------VNFWMAVLTRFLLGSLNGL-L  152 (371)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-~---------~~~~~~~~~r~l~G~~~~~-~  152 (371)
                      .+.+..+..++..++..+...+.-++.-|+++..+.++.++..+.... .         ++.+..+.--++..+..+. .
T Consensus       257 ~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~~~i~~  336 (433)
T PF03092_consen  257 YGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVIGMIAF  336 (433)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHHHHHHH
Confidence            777777777888888888888877888888888887776665543221 1         1122222233444443333 4


Q ss_pred             hHHHHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCCCCcccccccccCccchhHHHHHHHHHHHHHHH
Q 017429          153 GPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIA  232 (371)
Q Consensus       153 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (371)
                      .|...+++|+.|+...|+..++..+..++|..++..++..+.+..+-.      +.-| . +-+...++..+..++.+..
T Consensus       337 mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt------~~~f-~-~l~~lili~~~~~ll~l~l  408 (433)
T PF03092_consen  337 MPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVT------RDDF-S-NLWLLILICSVIQLLPLPL  408 (433)
T ss_pred             HHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC------cccc-c-chHHHHHHHHHHHHHHHHH
Confidence            556889999999999999999999999999999999999988733211      1112 1 1222334444455555556


Q ss_pred             Hhhcccccc
Q 017429          233 AFWLPETLH  241 (371)
Q Consensus       233 ~~~~~e~~~  241 (371)
                      ..++|+..+
T Consensus       409 l~lLp~~~~  417 (433)
T PF03092_consen  409 LFLLPPQKR  417 (433)
T ss_pred             HHHcCCCch
Confidence            667776543

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=97.08  E-value=0.00061  Score=62.66  Aligned_cols=85  Identities=22%  Similarity=0.399  Sum_probs=66.4

Q ss_pred             hHHHHHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHH-H
Q 017429           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG-T  119 (371)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~-~  119 (371)
                      |.++.+=+..+......+.+.|.++.+.+++|++..+      .|.+...--+..+++.|++|.++||+.+||.++++ .
T Consensus        11 r~l~~~k~f~~~~~~~~g~l~pll~vy~kQLGl~p~~------~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl   84 (618)
T KOG3762|consen   11 RALIVAKLFYLFFGARFGSLFPLLAVYFKQLGLNPAV------VGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSL   84 (618)
T ss_pred             hhhheeeeeeeeeeecccccchHHHHHHHHcCCCHHH------hhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHH
Confidence            3344333445556667788899999999999999999      99999999999999999999999999876666555 5


Q ss_pred             HHHHHHHHHHHh
Q 017429          120 ASVVIFNTLFGL  131 (371)
Q Consensus       120 ~~~~~~~~~~~~  131 (371)
                      +....+.++..+
T Consensus        85 ~~~v~a~fll~f   96 (618)
T KOG3762|consen   85 LLSVTATFLLVF   96 (618)
T ss_pred             HHHHHHHHheee
Confidence            555555555554

>PRK03612 spermidine synthase; Provisional

Probab=96.95  E-value=0.053  Score=51.50  Aligned_cols=121  Identities=14%  Similarity=0.113  Sum_probs=69.2

Q ss_pred             HHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHH---HHHHHhHHH----H-HHH
Q 017429           67 MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF---NTLFGLSVN----F-WMA  138 (371)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~---~~~~~~~~~----~-~~~  138 (371)
                      +..-+|-+..+      .+.+.+++..|..+|+.+++++.++.-|+ ...+-..+..++   ..+......    . ..+
T Consensus        41 l~~~~G~s~~~------~~~ii~~fl~glalGs~l~~~~~~~~~~~-~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~  113 (521)
T PRK03612         41 ASYLLGDSVTQ------FSTVIGLMLFAMGVGALLSKYLLRDAAAG-FVAVELLLALLGGLSALILYAAFAFQGLSRLLL  113 (521)
T ss_pred             HHHHhCchHHH------HHHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33456777777      89999999999999999999887432222 221111111111   111111111    1 112


Q ss_pred             HHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcC
Q 017429          139 VLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (371)
Q Consensus       139 ~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~  195 (371)
                      +...++.++..|+..|. ..+..+. ..++-++..|-.+....+|+++|+++.+++.-
T Consensus       114 ~~~~~~~~~l~G~~~Pl~~~~~~~~-~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLl  170 (521)
T PRK03612        114 YVLVLLIGLLIGMEIPLLMRILQRI-RDQHLGHNVATVLAADYLGALVGGLAFPFLLL  170 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc-cccchhhhhhhhHhHHhHHHHHHHHHHHHHHH
Confidence            23334456666666664 3333332 22224566788888899999999999888765

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=96.91  E-value=0.15  Score=44.38  Aligned_cols=98  Identities=12%  Similarity=0.147  Sum_probs=63.5

Q ss_pred             HHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccc--cch
Q 017429           92 MFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFRE--EHQ  168 (371)
Q Consensus        92 ~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~--~~r  168 (371)
                      .+.-+..+++.+.+..++|-|+++.++...+......- +-+.+..++-.-...|++.+..+.. -+|+++.-..  +.|
T Consensus        68 y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~N-l~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya~~~  146 (390)
T KOG3097|consen   68 YLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIAAN-LEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYANQR  146 (390)
T ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh-cchhHHhhccHHHhhccccccccccCcceecHHHHHHHHhh
Confidence            34445666666689999999999999887776554322 2356677888889999998887776 6676665432  234


Q ss_pred             ---------hhhhHhhhhhhhhHHhHHHhhh
Q 017429          169 ---------ALGLSTVSTAWGIGLIIGPALG  190 (371)
Q Consensus       169 ---------~~~~~~~~~~~~~g~~~g~~i~  190 (371)
                               .+-.+.+.+...-+...|..++
T Consensus       147 ~~q~~~~~~~~ffg~Ffii~~~~qv~gn~is  177 (390)
T KOG3097|consen  147 GEQAGDGMKVRFFGEFFIIFQCAQVWGNLIS  177 (390)
T ss_pred             hhhccCceeeeehhHHHHHHHHHHHHHHHHH
Confidence                     3444555444444444444333

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=96.66  E-value=0.035  Score=51.06  Aligned_cols=128  Identities=8%  Similarity=-0.103  Sum_probs=90.6

Q ss_pred             chhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHHh---H---H
Q 017429           60 LFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGL---S---V  133 (371)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~---~---~  133 (371)
                      ....+..+...-|+++..      +|..-+...+..+.+.+...++.+|+|..|.=+++...-.++..++..   .   +
T Consensus       277 f~~lmt~yl~~~G~s~~~------igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~  350 (432)
T PF06963_consen  277 FGGLMTAYLKSQGYSPSV------IGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSP  350 (432)
T ss_pred             CcHHHHHHHHHCCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            345555566666999999      999999999999999999999999999888877776654444333322   1   1


Q ss_pred             ----HHHHHHHHHHHHhhhccchhH-HHHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhh
Q 017429          134 ----NFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL  193 (371)
Q Consensus       134 ----~~~~~~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l  193 (371)
                          +...++.+-++.-+|.=.+.. ..-++-|..|+++||...|.-....++-.++...++-.+
T Consensus       351 ~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~  415 (432)
T PF06963_consen  351 FSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIF  415 (432)
T ss_pred             chhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence                233344444444454223333 488899999999999999998888888777766665433

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=96.55  E-value=0.059  Score=49.68  Aligned_cols=109  Identities=17%  Similarity=0.193  Sum_probs=83.2

Q ss_pred             hHHHHHHHHHHHHHHhHHHHhhhhhcCCc---h----HHHHHHHHHHHHHHHHHhH----------HHHHHHHHHHHHHh
Q 017429           84 AGYVGSSFMFGRALTSVFWGLVADRYGRK---P----VIIMGTASVVIFNTLFGLS----------VNFWMAVLTRFLLG  146 (371)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr---~----~l~~~~~~~~~~~~~~~~~----------~~~~~~~~~r~l~G  146 (371)
                      .++..+...+.-++.+|+..++--+.++|   +    =+-+++.+.+.+.++....          .+.++++...++++
T Consensus       326 ~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s  405 (498)
T COG3104         326 PAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQS  405 (498)
T ss_pred             HHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHH
Confidence            56778888888888888887777775443   1    1345555555555554432          36789999999999


Q ss_pred             hhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhh
Q 017429          147 SLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGF  192 (371)
Q Consensus       147 ~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~  192 (371)
                      +|+=+.+|+ .++++...|++-.+..++.+......|+.++..+++.
T Consensus       406 ~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~  452 (498)
T COG3104         406 FGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGL  452 (498)
T ss_pred             HHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceeccc
Confidence            999898997 9999999999999999999888888888877777663

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.53  E-value=0.049  Score=50.28  Aligned_cols=106  Identities=16%  Similarity=0.291  Sum_probs=75.9

Q ss_pred             hHHHHHHHHHHHHHHhHHHHhhhh---hcCCchHHHHHHHHHHHHHHHHHhH------------------HHHHHHHHHH
Q 017429           84 AGYVGSSFMFGRALTSVFWGLVAD---RYGRKPVIIMGTASVVIFNTLFGLS------------------VNFWMAVLTR  142 (371)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~g~l~d---r~Grr~~l~~~~~~~~~~~~~~~~~------------------~~~~~~~~~r  142 (371)
                      .++..-...++..+++.+.+.+++   ++||++.+.++.++..+..++.-..                  ++.....+.-
T Consensus       281 ~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~  360 (461)
T KOG3098|consen  281 IAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIG  360 (461)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHH
Confidence            444455556677777777777775   5789999999888887777665431                  2455667777


Q ss_pred             HHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhh
Q 017429          143 FLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG  190 (371)
Q Consensus       143 ~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~  190 (371)
                      ++.|++-++.... +.++.+.. +++|..+.++...-..++..++-...
T Consensus       361 ~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~  408 (461)
T KOG3098|consen  361 FLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFS  408 (461)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhh
Confidence            8999998888886 88888888 56688888887666666665544443

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=96.35  E-value=0.0083  Score=55.44  Aligned_cols=158  Identities=10%  Similarity=0.153  Sum_probs=87.8

Q ss_pred             cCCChhHHHHHHHHHHHhhcccccchhhH-HHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhh-hhcCCch
Q 017429           36 SGLPITELFSIWIIVLCTALPISSLFPFL-YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVA-DRYGRKP  113 (371)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~-dr~Grr~  113 (371)
                      .+..+...+.+++..+...+......... +.....++++.++  ...+.|...++..+-.....+..+... -++.+|+
T Consensus       257 ~~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~--av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r~  334 (488)
T KOG2325|consen  257 PKLDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSE--AVLYNGITLSISGILSVILLLLYIFTRLGKIDKRR  334 (488)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccch--HHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhccce
Confidence            34444555555555554444433322222 3444556777665  112234444444333333333333333 3445566


Q ss_pred             HHHHHHHHHHHHHHHHHhH-------------------------------HHHHHHHHHH-HHHhhhccchhH-HHHHHh
Q 017429          114 VIIMGTASVVIFNTLFGLS-------------------------------VNFWMAVLTR-FLLGSLNGLLGP-IKAYAC  160 (371)
Q Consensus       114 ~l~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~r-~l~G~~~~~~~~-~~~~~~  160 (371)
                      .+..++++......+..+.                               .+.+.+++.+ ++.|.+.-.... ..++-+
T Consensus       335 ~~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlyS  414 (488)
T KOG2325|consen  335 IILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYS  414 (488)
T ss_pred             eeeehHHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccccchHHHHHH
Confidence            6666644444433332210                               1122333333 334555444444 488999


Q ss_pred             hhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcC
Q 017429          161 EIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (371)
Q Consensus       161 ~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~  195 (371)
                      |...|++++...++++.....+..+||++......
T Consensus       415 kiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~  449 (488)
T KOG2325|consen  415 KILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFT  449 (488)
T ss_pred             HHhCCccccceeEEEEeccchhhhhhHHHHhhhHH
Confidence            99999999999999999999999999999888877

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=96.22  E-value=0.046  Score=50.65  Aligned_cols=109  Identities=13%  Similarity=0.037  Sum_probs=73.3

Q ss_pred             hHHHHHHHHHHHHHHhHHHHhhhhhcCCc-hHHHHHHHH---HHHHHHHHHhH---------HHHHHHHHHHHHHhhhcc
Q 017429           84 AGYVGSSFMFGRALTSVFWGLVADRYGRK-PVIIMGTAS---VVIFNTLFGLS---------VNFWMAVLTRFLLGSLNG  150 (371)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr-~~l~~~~~~---~~~~~~~~~~~---------~~~~~~~~~r~l~G~~~~  150 (371)
                      .-.....++++-.+|..+..+.. .-++| +.+.+..+.   +....++|...         ++-+..++..++.|+..|
T Consensus       309 ~~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnG  387 (437)
T TIGR00939       309 PIICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNG  387 (437)
T ss_pred             HHHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhh
Confidence            45666778888888887554431 11222 133333333   33333333322         355667777899999999


Q ss_pred             chhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhh
Q 017429          151 LLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL  193 (371)
Q Consensus       151 ~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l  193 (371)
                      ..... ..+..+..++++|..+..+...+..+|..+|..++-.+
T Consensus       388 y~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~  431 (437)
T TIGR00939       388 YLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLF  431 (437)
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88885 88889999999999998888889899998888775433

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=95.90  E-value=0.61  Score=42.26  Aligned_cols=120  Identities=14%  Similarity=0.156  Sum_probs=56.5

Q ss_pred             HHHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHH
Q 017429           44 FSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVV  123 (371)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~  123 (371)
                      +..++..+......+...+..+++.+++-.+..+   ............+...+....--.+.-|. |+++.....+...
T Consensus        21 ~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~~---~~F~~~~~~~a~i~~ll~~~~n~~~~~~~-~~~~~~~l~~~~i   96 (406)
T KOG1479|consen   21 LIFLLLGIGTLLPWNMFITASDYYYYRFPGYHNS---KNFTSSYTLAAQIPLLLFNLLNAFLNTRL-RTRVGYLLSLIAI   96 (406)
T ss_pred             HHHHHHhcccccchHhhhccHHHHHhhcCCCchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            3444444444556667777777777766443322   11123333333444445555555555552 2222222222222


Q ss_pred             HHHHHHHhH---------HHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccch
Q 017429          124 IFNTLFGLS---------VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQ  168 (371)
Q Consensus       124 ~~~~~~~~~---------~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r  168 (371)
                      +....+.++         ..+...++.-.+.+.+.|.+... ....+ .+|++.-
T Consensus        97 l~i~~l~~~~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~-~~P~~yt  150 (406)
T KOG1479|consen   97 LFIVTLDLALVKTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAG-LFPSEYT  150 (406)
T ss_pred             HHHHHHHHHhhccCCccchhHHHHHHHHHHHhhhhhhhccchhhhhh-cCCHHHH
Confidence            222222222         23455555566677777776665 55444 4566543

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=95.87  E-value=0.089  Score=46.57  Aligned_cols=51  Identities=12%  Similarity=0.094  Sum_probs=44.5

Q ss_pred             ccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHhhhhccc
Q 017429          318 LNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVNFEHSVA  369 (371)
Q Consensus       318 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~  369 (371)
                      +|++..+++.++........+.. .+.+.+.||+|||+..+..++++.++.+
T Consensus        64 yg~~~~qIa~Lf~~Gf~Ss~i~g-~~~G~laD~~Grk~~cl~~cily~~scl  114 (354)
T PF05631_consen   64 YGFSEHQIAILFVAGFASSAIFG-TFVGSLADRYGRKKACLLFCILYSLSCL  114 (354)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence            79999999999999888888888 4789999999999998888888777653

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=95.65  E-value=0.003  Score=60.10  Aligned_cols=147  Identities=14%  Similarity=0.234  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHhhcccccchhhHH-HHHHhhccccccccchhhhHHHHHHHHH-HHHHHhHHHHhhhhhcC--CchHHHHH
Q 017429           43 LFSIWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMF-GRALTSVFWGLVADRYG--RKPVIIMG  118 (371)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~G--rr~~l~~~  118 (371)
                      ++...++.....+....+.++.| ++..+|+.+.++      .+++..+..+ +.++|.+++|.+..|+.  .|..+...
T Consensus       307 f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~------A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~  380 (539)
T PF03137_consen  307 FMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQ------ASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFC  380 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------HHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHH
Confidence            33455566666677777888888 556789999888      7777766555 66788999999999885  45555444


Q ss_pred             HHHHHHHHHH---HHh--H---------H----------------------------------------HHHHHHHHHHH
Q 017429          119 TASVVIFNTL---FGL--S---------V----------------------------------------NFWMAVLTRFL  144 (371)
Q Consensus       119 ~~~~~~~~~~---~~~--~---------~----------------------------------------~~~~~~~~r~l  144 (371)
                      .+...+..+.   ..+  +         .                                        .+..+++..++
T Consensus       381 ~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~  460 (539)
T PF03137_consen  381 IVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFI  460 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHH
Confidence            4444333322   100  0         0                                        01122233233


Q ss_pred             Hhhhccc-hhHHHHHHhhhccccchhhhhHhhhhhh-hhHHhHHHhhhhhhcC
Q 017429          145 LGSLNGL-LGPIKAYACEIFREEHQALGLSTVSTAW-GIGLIIGPALGGFLAQ  195 (371)
Q Consensus       145 ~G~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~~g~~~g~~i~~~l~~  195 (371)
                      .-+..+. ..|....+-..+|+++|+.++|+..... .+|.+=||++-|.+.|
T Consensus       461 ~~~~~~~~~~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD  513 (539)
T PF03137_consen  461 LSFFTFMSQVPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIID  513 (539)
T ss_dssp             -----------------------------------------------------
T ss_pred             HHHHHHhcccchheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHh
Confidence            2232222 3334556668899999999999986544 4688889999999988

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=95.62  E-value=0.0037  Score=55.21  Aligned_cols=106  Identities=19%  Similarity=0.118  Sum_probs=2.2

Q ss_pred             HHHHHHHHHHHHHhHHHHhhhhhc-CCchHHHH--HHHHHHHHHHHHHh----------HHHHHHHHHHHHHHhhhccch
Q 017429           86 YVGSSFMFGRALTSVFWGLVADRY-GRKPVIIM--GTASVVIFNTLFGL----------SVNFWMAVLTRFLLGSLNGLL  152 (371)
Q Consensus        86 ~~~~~~~~~~~~~~~~~g~l~dr~-Grr~~l~~--~~~~~~~~~~~~~~----------~~~~~~~~~~r~l~G~~~~~~  152 (371)
                      .....++++-.+|....++.--+. .+|++...  .-+++....++|..          .++-+..++.-++.|+.+|-.
T Consensus       186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl  265 (309)
T PF01733_consen  186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL  265 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence            345678888888888777642111 24444332  12222222233311          234466777788999999988


Q ss_pred             hHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhh
Q 017429          153 GPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGG  191 (371)
Q Consensus       153 ~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~  191 (371)
                      ... ..+..+..++++|..+..+...+..+|..+|..++-
T Consensus       266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~  305 (309)
T PF01733_consen  266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSF  305 (309)
T ss_dssp             -HHHH-----------------------------------
T ss_pred             hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            885 889999999999998888888888888888877653

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=95.19  E-value=0.12  Score=35.50  Aligned_cols=65  Identities=22%  Similarity=0.128  Sum_probs=50.7

Q ss_pred             hhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHhhhhcc
Q 017429          297 HDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVNFEHSV  368 (371)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~  368 (371)
                      .-+.+...+|....+      .++|..+.|++-+.+.++..++.+ ...++.++.++++.+..+.+...++.
T Consensus         7 gRFayTplLP~M~~~------~~ls~~~ag~lasaNy~GYL~GAl-~~~~~~~~~~~~~~~~~~l~~~~~~~   71 (85)
T PF06779_consen    7 GRFAYTPLLPLMQAD------GGLSLSQAGWLASANYLGYLVGAL-LASRLPRHSRPRRLLRAGLLLTVLST   71 (85)
T ss_pred             HHHHHHhHhHHHHHh------cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcccHHHHHHHHHHHHHHHH
Confidence            345666677766555      699999999999999999999994 77788887777888877777665544

Note that many members are hypothetical proteins.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=95.05  E-value=0.058  Score=52.74  Aligned_cols=78  Identities=12%  Similarity=0.221  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHhhcccccchhhHHHHH-HhhccccccccchhhhHHHHHHHHH-HHHHHhHHHHhhhhhcCC--chHHHHH
Q 017429           43 LFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMF-GRALTSVFWGLVADRYGR--KPVIIMG  118 (371)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~Gr--r~~l~~~  118 (371)
                      ++...+..++.......+..++|.+. +++|.+..+      .+++.+...+ +.+++.+++|+++||+++  |+.+.++
T Consensus       332 f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~------ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~  405 (633)
T TIGR00805       332 YMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAE------ANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFA  405 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH------HHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHH
Confidence            34445555555556666677888555 569999988      8888887766 568999999999999984  5666666


Q ss_pred             HHHHHHHH
Q 017429          119 TASVVIFN  126 (371)
Q Consensus       119 ~~~~~~~~  126 (371)
                      .+...++.
T Consensus       406 ~~~~~~~~  413 (633)
T TIGR00805       406 ICLSTLSY  413 (633)
T ss_pred             HHHHHHHH
Confidence            65555544

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=94.92  E-value=0.79  Score=41.85  Aligned_cols=98  Identities=18%  Similarity=0.208  Sum_probs=69.3

Q ss_pred             cchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHH--HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhccchhH-H
Q 017429           79 DIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG--TASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-I  155 (371)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~-~  155 (371)
                      +...+.|.+-++..+...++++..|++..++.+-.-+.++  .++.+...++++..+|.|..+++.++.+...-...+ +
T Consensus       282 ~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA  361 (412)
T PF01770_consen  282 NESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIA  361 (412)
T ss_pred             CCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455689999999999999999999997777775444443  444555667778889999999998887765444333 4


Q ss_pred             HHHHhhhccccchhhhhHhhh
Q 017429          156 KAYACEIFREEHQALGLSTVS  176 (371)
Q Consensus       156 ~~~~~~~~~~~~r~~~~~~~~  176 (371)
                      ..-++.....+.-+..+|+..
T Consensus       362 ~~qIA~~l~~e~yaLVFGiNt  382 (412)
T PF01770_consen  362 SFQIAKNLSEERYALVFGINT  382 (412)
T ss_pred             HHHHHHhccccceeeeeeeHH
Confidence            555666666666666666653

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=94.46  E-value=0.94  Score=42.12  Aligned_cols=51  Identities=18%  Similarity=0.146  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhh
Q 017429          134 NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPAL  189 (371)
Q Consensus       134 ~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i  189 (371)
                      .++..++.-++.|++.+..... .++.+ .+|++.    +..+..+.+++++++.++
T Consensus       105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~~----~~a~~~G~g~aGv~~s~~  156 (437)
T TIGR00939       105 FFVTTMASVVIINSGMALLQGSLFGLAG-VFPSTY----SSAVMSGQGLAGVLTSLA  156 (437)
T ss_pred             HHHHHHHHHHHHHhhhhhhcccchhhcc-cCCHHH----HHHHHhcchhHHHHHHHH
Confidence            4556666667788888777765 55555 667553    444555666666665544

>TIGR00806 rfc RFC reduced folate carrier

Probab=94.35  E-value=0.21  Score=46.46  Aligned_cols=48  Identities=19%  Similarity=0.269  Sum_probs=43.0

Q ss_pred             ccccchh-hhHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHhhhh
Q 017429          318 LNYSTQM-VGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVNFEH  366 (371)
Q Consensus       318 ~~~s~~~-~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~  366 (371)
                      +|++..+ .|.+.+.+..+..+..+ .++++.||+|.|+++..+.+.-.+
T Consensus        56 lglT~~qv~G~I~s~F~ysYal~qI-p~GlLaDrlG~K~vL~l~~l~Wsl  104 (511)
T TIGR00806        56 LNFTEETVTNEIIPVLPYSHLAVLV-PVFLLTDYLRYKPVLVLQALSFVC  104 (511)
T ss_pred             cCCCHHHhcchHHHHHHHHHHHHHH-HHHHHHHHhCchHHHHHHHHHHHH
Confidence            8999999 99999999999999995 789999999999999887766544

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=93.94  E-value=0.44  Score=41.32  Aligned_cols=176  Identities=13%  Similarity=0.049  Sum_probs=101.0

Q ss_pred             HHHHHHHHHHhhcccccchhhHHHHHHhhcccccc----c-----cchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCch
Q 017429           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKRE----E-----DIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKP  113 (371)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-----~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~  113 (371)
                      ....|+..++....+.+......++..+-.-+...    .     -.....|.+.-+-.+...+..+.+..+.||+.--.
T Consensus        14 ~~~FwllGLcNN~~YVvmLSAA~DIl~~~~~~~~~~c~~h~~~r~c~~~stg~VLLaDilPsL~iKl~~Pff~~rfpf~~   93 (409)
T KOG3880|consen   14 AVAFWLLGLCNNYGYVVMLSAAEDILSEQVSDPGPTCIPHNSGRECQSVSTGAVLLADILPSLAIKLTAPFFIHRFPFGF   93 (409)
T ss_pred             chHHHHHHHhcccceEeehhhhhhhhccccCCCCCCcccccccccccccccchhhhhhhhHHHHHHHhchhhhhhcccch
Confidence            33455666666666654444444444332111100    0     00111455666666777777888888888875433


Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhccchhHHHHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhh
Q 017429          114 VIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL  193 (371)
Q Consensus       114 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l  193 (371)
                      =..+..++.+.+.++.+++++.++-+++-.+..++.|.-....--++..+++.    ..+-++.+.+.++++|..--.++
T Consensus        94 Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss~Y~~~----~i~~WSSGTGgAGliGa~SYa~l  169 (409)
T KOG3880|consen   94 RIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSSRYPSI----VIAGWSSGTGGAGLIGASSYAFL  169 (409)
T ss_pred             HHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhccCCCc----eeccccCCCCcchhhhhhHHHHH
Confidence            34445566777777888889888888888888787777655533344444433    34455566666666665554445


Q ss_pred             cCcCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhhc
Q 017429          194 AQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL  236 (371)
Q Consensus       194 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (371)
                      .+.             + ....+...++...+.++....++++
T Consensus       170 T~~-------------~-~~spk~Tlli~l~lP~lfa~~yf~l  198 (409)
T KOG3880|consen  170 TSW-------------A-NLSPKSTLLIMLFLPALFAFAYFFL  198 (409)
T ss_pred             hhh-------------c-CCChhhHHHHHHHHHHHHHHHHHhe
Confidence            440             1 4555666677766666555554443

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=93.61  E-value=0.99  Score=40.93  Aligned_cols=106  Identities=18%  Similarity=0.101  Sum_probs=73.2

Q ss_pred             hHHHHHH-HHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHH---------hHHHHHHHHHHHHHHhhhccchh
Q 017429           84 AGYVGSS-FMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFG---------LSVNFWMAVLTRFLLGSLNGLLG  153 (371)
Q Consensus        84 ~~~~~~~-~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---------~~~~~~~~~~~r~l~G~~~~~~~  153 (371)
                      .-+...+ +++...+|.+.+.++-++ +||.. .+..++-.+..-++.         .-.+-++++....+.|+..|-..
T Consensus       284 ~~~~~~l~fN~~d~vG~~~a~~~~~~-~~r~l-~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYlt  361 (406)
T KOG1479|consen  284 ALLLVFLSFNVFDLIGSILAALLTWP-DPRKL-TIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYLT  361 (406)
T ss_pred             HHHHHHHHhHHHHHhhhhhhhcccCC-CCcee-hHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchHh
Confidence            4555566 888888887777776654 33433 333333333322222         13466788888899999999988


Q ss_pred             HH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhh
Q 017429          154 PI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGG  191 (371)
Q Consensus       154 ~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~  191 (371)
                      .+ ..+..+..|++++-.+..+.......|...|..++-
T Consensus       362 sl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s~  400 (406)
T KOG1479|consen  362 SLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLSW  400 (406)
T ss_pred             hheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            86 899999999998888777777777778887776653

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=92.18  E-value=0.23  Score=41.93  Aligned_cols=108  Identities=14%  Similarity=0.089  Sum_probs=53.6

Q ss_pred             cchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhhccccccCCCC
Q 017429          166 EHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHND  245 (371)
Q Consensus       166 ~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  245 (371)
                      ++|+........+.++|.++....  ++....        -+..- +-.|+..+.+.+++.++-++.+..+- ++-+...
T Consensus         2 k~K~~~s~~n~~gf~iG~ii~~ip--F~~~~~--------~~~~~-~~~W~~I~si~~lL~~IpLIly~ifG-k~fd~~~   69 (267)
T PF07672_consen    2 KKKSILSQFNPWGFNIGTIIVNIP--FLISSS--------VVIAL-TNNWQWILSIFILLIFIPLILYIIFG-KNFDIYS   69 (267)
T ss_pred             CccceeeeeccccchhhHHHHHhh--HHhcch--------HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhc-ccccccC
Confidence            456665566666778887765333  222100        00001 44577776776666665555544442 2211111


Q ss_pred             CCccchhhhhhhhhhhhhhhhhcccCCccccccccccchHHHHHHHHHHHhh
Q 017429          246 DDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLH  297 (371)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (371)
                      +++.++.            ++.....+....+.+|++..|...+.+......
T Consensus        70 ~~~k~~k------------~~~~~~~~~s~~~~LK~K~tw~w~~~Yg~wLv~  109 (267)
T PF07672_consen   70 PKEKQEK------------ENSTLSKKPSYKSILKEKETWKWILIYGIWLVV  109 (267)
T ss_pred             ccccccc------------ccccccccchHHHHHccchHHHHHHHHHHHhee
Confidence            1100000            000112235677889999988887777765543

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=91.70  E-value=1.6  Score=40.18  Aligned_cols=110  Identities=17%  Similarity=0.077  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhccchhHH-HHHHhhhcc
Q 017429           86 YVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFR  164 (371)
Q Consensus        86 ~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~  164 (371)
                      |-..++.+...+.+...-++.||+|-|+.+..+...+.++..+.+..++.+.....+-..|+-.+....+ +..+++...
T Consensus       336 ~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~y~~  415 (498)
T KOG0637|consen  336 LGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGALALYAI  415 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHHHHHHH
Confidence            4456667777889999999999999777777777767777777777888888888888888654443332 333332211


Q ss_pred             ---------------------c--cchhhhhHhhhhhhhhHHhHHHhhhhhhcC
Q 017429          165 ---------------------E--EHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (371)
Q Consensus       165 ---------------------~--~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~  195 (371)
                                           .  ..+|.-.|+.+....+.+++.....|.+.+
T Consensus       416 ~g~~~a~t~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~  469 (498)
T KOG0637|consen  416 LGIPLAITFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQ  469 (498)
T ss_pred             hCCccccccccccccccccccCccCCCCceeeeeeeeeeehhheeeccccchhh
Confidence                                 1  123455566677777777776666666666

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=87.44  E-value=8.6  Score=32.73  Aligned_cols=102  Identities=20%  Similarity=0.204  Sum_probs=52.0

Q ss_pred             hHHHHHHHHHHHHHHhHHHHhhhhh-cCCchHHH----HHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHhhhccchh
Q 017429           84 AGYVGSSFMFGRALTSVFWGLVADR-YGRKPVII----MGTASVVIFNTLFGL-----SVNFWMAVLTRFLLGSLNGLLG  153 (371)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~g~l~dr-~Grr~~l~----~~~~~~~~~~~~~~~-----~~~~~~~~~~r~l~G~~~~~~~  153 (371)
                      ......++..+..+|....|++... +.||+.+.    .+.+..++..++...     ..+...+++.-++.|++.=...
T Consensus       143 ~~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ  222 (267)
T PF07672_consen  143 IPIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQ  222 (267)
T ss_pred             hHHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhh
Confidence            4455566677777888888888864 45555544    223333333333111     1245667777788887532233


Q ss_pred             HHHHHHhhhccccchhhhhHhhhhhhhhHHhH
Q 017429          154 PIKAYACEIFREEHQALGLSTVSTAWGIGLII  185 (371)
Q Consensus       154 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~  185 (371)
                      ++.-.+..-++...+-+.--.++..+++|.++
T Consensus       223 ~ViL~lPhEyK~~~pk~ig~~Fg~iWGfGY~~  254 (267)
T PF07672_consen  223 GVILNLPHEYKGYNPKKIGIQFGLIWGFGYIF  254 (267)
T ss_pred             HHHhcChhhhcCCCcceehhHHHHHHHHHHHH
Confidence            33333333333333333333345556666554

>COG3559 TnrB3 Putative exporter of polyketide antibiotics [Cell envelope biogenesis, outer membrane]

Probab=85.84  E-value=28  Score=31.86  Aligned_cols=85  Identities=9%  Similarity=0.067  Sum_probs=38.6

Q ss_pred             HHHHHHhhh---ccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCc---CCCCCCccccccc---
Q 017429          140 LTRFLLGSL---NGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP---AEKYPNLFSSESL---  209 (371)
Q Consensus       140 ~~r~l~G~~---~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~---~~~~~~~~g~~~~---  209 (371)
                      .+.+..|+.   .|+...+ .++..+++|...-.+++++..    +|..   .+--.+.|.   .-+|-+..||+..   
T Consensus       163 ags~afgvtl~~tg~~~~avaalf~qL~~~a~~t~g~~f~l----lG~a---flvRmi~Dvss~~L~WfsPlgW~~~~~p  235 (536)
T COG3559         163 AGSVAFGVTLAATGMVFTAVAALFAQLSPSARFTRGVAFAL----LGTA---FLVRMIGDVSSGTLSWFSPLGWSLQVRP  235 (536)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHhCccccccchhHHHH----HHHH---HHHHHHhcccccccccccCccceEEeee
Confidence            344555542   3344444 667777777554333333321    1211   112222222   2345566777653   


Q ss_pred             ccCccchhHHHHHHHHHHHHHH
Q 017429          210 FGKFPYFLPCLCISLFAFGVTI  231 (371)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~  231 (371)
                      +-.-.|+..++..+++.++..+
T Consensus       236 yv~e~Wl~~llt~~~aa~l~gv  257 (536)
T COG3559         236 YVGERWLVLLLTLATAAVLTGV  257 (536)
T ss_pred             cccchHHHHHHHHHHHHHHHHH
Confidence            2233566665555554444333

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=83.44  E-value=27  Score=30.12  Aligned_cols=97  Identities=15%  Similarity=0.118  Sum_probs=65.1

Q ss_pred             hHHHHHHHHHHHHHHhHHHHhhhhhcCCc--hHHHHHHHHHHHHHHHHHhHH-------HHHHHHHHHHHHhhhccchhH
Q 017429           84 AGYVGSSFMFGRALTSVFWGLVADRYGRK--PVIIMGTASVVIFNTLFGLSV-------NFWMAVLTRFLLGSLNGLLGP  154 (371)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr--~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~r~l~G~~~~~~~~  154 (371)
                      -|.+.+.++++.++|+-+..++..|-..|  ..+.+..++......+.....       ++..-+++..+.-.+.|.++|
T Consensus       284 hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwP  363 (454)
T KOG4332|consen  284 HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWP  363 (454)
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcch
Confidence            68889999999999999998888765543  455555554444433332211       222234455555567788888


Q ss_pred             H-HHHHhhhccccchhhhhHhhhhhhh
Q 017429          155 I-KAYACEIFREEHQALGLSTVSTAWG  180 (371)
Q Consensus       155 ~-~~~~~~~~~~~~r~~~~~~~~~~~~  180 (371)
                      . ..+-++..|++.|...+.++..-.+
T Consensus       364 SimkmRsqyIPEearstimNfFRvPLn  390 (454)
T KOG4332|consen  364 SIMKMRSQYIPEEARSTIMNFFRVPLN  390 (454)
T ss_pred             HHHHHHHhhCCHHHHhhhhhheechhh
Confidence            6 8888889999999998888654433

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=83.24  E-value=1.4  Score=43.14  Aligned_cols=80  Identities=15%  Similarity=0.226  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHhhcccccchhhHH-HHHHhhccccccccchhhhHHHHHHHHHH-HHHHhHHHHhhhhhcC--CchHHHHH
Q 017429           43 LFSIWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFG-RALTSVFWGLVADRYG--RKPVIIMG  118 (371)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~l~dr~G--rr~~l~~~  118 (371)
                      ++...+...+.......+.+++| ++.++|+.+.+.      +..+.+...+. ..+|..++|.+..|+.  .|.+..+.
T Consensus       394 f~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~------An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~  467 (735)
T KOG3626|consen  394 FMLVVLASVIESLAITGYITFLPKYLETQFGISASL------ANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFV  467 (735)
T ss_pred             HHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHH------HHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHH
Confidence            34556666777777788889999 555789999988      77777665544 4678889999999875  45555555


Q ss_pred             HHHHHHHHHH
Q 017429          119 TASVVIFNTL  128 (371)
Q Consensus       119 ~~~~~~~~~~  128 (371)
                      ++...+..+.
T Consensus       468 ~~~~~l~l~~  477 (735)
T KOG3626|consen  468 IVCSVLSLLF  477 (735)
T ss_pred             HHHHHHHHHH
Confidence            5444444433

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=82.33  E-value=44  Score=31.57  Aligned_cols=80  Identities=10%  Similarity=0.142  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHH
Q 017429           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV  122 (371)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~  122 (371)
                      +..+.+..++.+...+.+........++..-++.  +.+.+.|.+.....+...+.+++.+++.+|+|-+....+.-++.
T Consensus       266 L~~ia~~vi~y~~~~nlve~~~k~~v~~~~p~~~--~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~  343 (472)
T TIGR00769       266 ILDLALLVIAYGISINLVEVTWKSKLKAQYPSPN--EYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAALITPLVM  343 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            3344444445555544444444444444433332  23444666666667777777888899999999887776665544


Q ss_pred             HH
Q 017429          123 VI  124 (371)
Q Consensus       123 ~~  124 (371)
                      .+
T Consensus       344 li  345 (472)
T TIGR00769       344 LL  345 (472)
T ss_pred             HH
Confidence            44

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=82.02  E-value=8.1  Score=33.88  Aligned_cols=70  Identities=16%  Similarity=0.197  Sum_probs=51.8

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHhhhccchhH-HHHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhc
Q 017429          125 FNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (371)
Q Consensus       125 ~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~  194 (371)
                      .-.+..+.++++..++.-+..|+-+|...+ ..--+.+-.++++|-.+++....+-.+|..++..++-.+-
T Consensus       332 ~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalplh  402 (409)
T KOG3880|consen  332 LQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPLH  402 (409)
T ss_pred             HHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccch
Confidence            334455678888888888889996666555 4555556667888999999998888888888877765443

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=81.20  E-value=50  Score=31.27  Aligned_cols=56  Identities=11%  Similarity=0.062  Sum_probs=44.0

Q ss_pred             HHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcC
Q 017429          140 LTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (371)
Q Consensus       140 ~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~  195 (371)
                      +..++..+..-...++ .++-+.+.+|..=|+.|.+.++..++|+.--..+.-++.|
T Consensus       410 ~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD  466 (544)
T PF13000_consen  410 IQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVD  466 (544)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhh
Confidence            3345555655555664 8999999999999999999999999998877777767766

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=81.19  E-value=12  Score=27.54  Aligned_cols=42  Identities=14%  Similarity=0.233  Sum_probs=31.3

Q ss_pred             hHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHH
Q 017429           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF  125 (371)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~  125 (371)
                      .+.......++..++..+.|.+.|..|.+..+.+......+.
T Consensus        89 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (141)
T TIGR00880        89 LGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAA  130 (141)
T ss_pred             HHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHH
Confidence            667777788888899999999999888777666554444433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	371
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	2e-10
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	2e-06
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05
2cfq_A	417	Lactose permease; transport, transport mechanism,	8e-05
2cfq_A	417	Lactose permease; transport, transport mechanism,	5e-04

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375

 Score = 60.7 bits (148), Expect = 2e-10
 Identities = 27/158 (17%), Positives = 67/158 (42%), Gaps = 18/158 (11%)

Query: 89  SSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSL 148
            +++    ++ +F+G ++DR GR+PVI++G +  ++   +   + +  + +    + G +
Sbjct: 42  GAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQG-M 100

Query: 149 NGLLGPIKAYAC--EIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSS 206
              +G + A     +++         S ++    +  ++ P +GG L         +++ 
Sbjct: 101 GTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT-------MWNW 153

Query: 207 ESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHN 244
            + +     FL  LC  +        A W+PET     
Sbjct: 154 RACY----LFLLVLCAGVTF----SMARWMPETRPVDA 183

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 27/219 (12%), Positives = 56/219 (25%), Gaps = 34/219 (15%)

Query: 85  GYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFL 144
           G+  S        +    G V+DR   +  +  G           G       ++   F+
Sbjct: 65  GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFV 124

Query: 145 LGSLNGLL-GPIKAYACEI------FREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA 197
           L  L G   G    +          + ++ +   +S  + A  +G  I P L        
Sbjct: 125 LLFLCGWFQGM--GWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA-- 180

Query: 198 EKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL-----PETLHRHNDDDDSCDV 252
                     +                    + +A F                 +   + 
Sbjct: 181 ----WFNDWHAAL-----------YMPAFCAILVALFAFAMMRDTPQSCGLPPIE---EY 222

Query: 253 SYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVY 291
             D  +  + + ++E   +    + +L N  L    I  
Sbjct: 223 KNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIAN 261

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Length = 438

 Score = 45.7 bits (108), Expect = 1e-05
 Identities = 45/272 (16%), Positives = 84/272 (30%), Gaps = 55/272 (20%)

Query: 38  LPITELFSIWIIVLCTALPISSLFPFL--YFMIKDFQIAKREEDIGSYAGYVGSSFMFGR 95
             +  LF +W +     L    L P     F + +FQ           AG + S+F FG 
Sbjct: 29  ALLCSLFFLWAVA--NNL-NDILLPQFQQAFTLTNFQ-----------AGLIQSAFYFGY 74

Query: 96  ALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSV---NFWMAVLTRFLLGSLNGLL 152
            +  +  G++  +   K  II G     +   LF  +    N+ + ++  F++ +  G L
Sbjct: 75  FIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCL 134

Query: 153 G-PIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL--------------AQPA 197
                 +   +  E      L+   T    G II    G  L                  
Sbjct: 135 ETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSP 194

Query: 198 EKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDAL 257
           E+      S  L  + PY +    + L A  + +     P     ++ D           
Sbjct: 195 EQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTK--FPALQSDNHSD----------- 241

Query: 258 ESASAEVKEEEGREATPKKSLLKNWPLMSSII 289
                    ++G  +     L +      +++
Sbjct: 242 --------AKQGSFSASLSRLARIRHWRWAVL 265

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 8e-05
 Identities = 58/359 (16%), Positives = 95/359 (26%), Gaps = 125/359 (34%)

Query: 87  VGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFG---------------- 130
           V     F      +FW  +  +    P  ++      +   L                  
Sbjct: 176 VQCKMDFK-----IFW--LNLKNCNSPETVL-----EMLQKLLYQIDPNWTSRSDHSSNI 223

Query: 131 -LSVNFWMAVLTRFLLGSL--NGLL--------GPIKAYA--CEIF---REEHQALGLST 174
            L ++   A L R L      N LL            A+   C+I    R +     LS 
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283

Query: 175 VSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKF----PYFLP---C----LCIS 223
            +T     + +          P E        +SL  K+    P  LP          +S
Sbjct: 284 ATT---THISLDHHSMTL--TPDE-------VKSLLLKYLDCRPQDLPREVLTTNPRRLS 331

Query: 224 LFA--------------------FGVTIAAFW--LPETLHRHNDDD-----DSCDVSYDA 256
           + A                        I +    L    +R   D       S  +    
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL 391

Query: 257 LESASAEVKEEEGREATP---KKSLLKNWPLMSSIIVYCVF-----------SLHDM--- 299
           L     +V + +         K SL++  P  S+I +  ++           +LH     
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD 451

Query: 300 AYSEI--FSLWANSPKKLGGLNYSTQMVGEVLA-------ITGFSLLVFQLSLYPFLER 349
            Y+    F      P  L    Y    +G  L        +T F ++        FLE+
Sbjct: 452 HYNIPKTFDSDDLIPPYLD--QYFYSHIGHHLKNIEHPERMTLFRMVFLDFR---FLEQ 505

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417

 Score = 43.4 bits (102), Expect = 8e-05
 Identities = 39/293 (13%), Positives = 87/293 (29%), Gaps = 48/293 (16%)

Query: 81  GSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI---------FNTLFGL 131
            S  G + ++      L    +GL++D+ G +  ++     +++         F  L   
Sbjct: 42  KSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQY 101

Query: 132 SVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWG-IGLIIGPALG 190
           ++     V   +L    N     ++A+  ++ R  +   G + +   +G +G  +G ++ 
Sbjct: 102 NILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARM---FGCVGWALGASIV 158

Query: 191 GFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSC 250
           G                 +F     F+  L          +  F   +            
Sbjct: 159 GI----------------MFTINNQFVFWLGSGCALILAVLLFFAKTDAPS--------- 193

Query: 251 DVSYDALESASAEVKEEEGREATPKKSLLKNWPLMS-SIIVYCVFSLHDMAYSEIFSLWA 309
                +   A+A               L +   L   S+ V  V   +D+   +  + + 
Sbjct: 194 -----SATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFT 248

Query: 310 NSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGV 362
           +           T++ G V  +               + RI G      +AG 
Sbjct: 249 SFFATGE---QGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGT 297

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417

 Score = 40.7 bits (95), Expect = 5e-04
 Identities = 27/196 (13%), Positives = 54/196 (27%), Gaps = 22/196 (11%)

Query: 43  LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFW 102
             S+++I +     +       +F           E      GYV +      A    F 
Sbjct: 224 FLSLYVIGVSCTYDVFDQQFANFFTS----FFATGEQGTRVFGYVTTMGELLNASIMFFA 279

Query: 103 GLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACE 161
            L+ +R G K  +++    + +       + +    V+ + L       L      Y   
Sbjct: 280 PLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITS 339

Query: 162 IFREEHQALGLSTVS-TAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCL 220
            F     A            + +I    L G                 ++    +    L
Sbjct: 340 QFEVRFSATIYLVCFCFFKQLAMIFMSVLAGN----------------MYESIGFQGAYL 383

Query: 221 CISLFAFGVTIAAFWL 236
            + L A G T+ + + 
Sbjct: 384 VLGLVALGFTLISVFT 399

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	371
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	100.0
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.98
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.96
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.96
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.94
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.89
2xut_A	524	Proton/peptide symporter family protein; transport	99.86
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.62
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.54
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.52
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.42
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.41
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.1
2xut_A	524	Proton/peptide symporter family protein; transport	98.86

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=100.00  E-value=2e-31  Score=246.06  Aligned_cols=299  Identities=14%  Similarity=0.131  Sum_probs=234.6

Q ss_pred             CChhHHHHHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHH
Q 017429           38 LPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM  117 (371)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~  117 (371)
                      ..++.+..+++..+..++......+..|.+.+++|.+..+      .+++.+++.++..+++++.|+++||+|||+++++
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~   96 (438)
T 3o7q_A           23 SYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQ------AGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIIT   96 (438)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHH------HHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHH
Confidence            3455666677777888888888899999999999999999      9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH---HhHHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhh
Q 017429          118 GTASVVIFNTLF---GLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL  193 (371)
Q Consensus       118 ~~~~~~~~~~~~---~~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l  193 (371)
                      +.++.+++.+++   .++++++.+++.|++.|++.+...+. .++++|++|+++|++++++.+.+..+|..++|.+++.+
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  176 (438)
T 3o7q_A           97 GLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL  176 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred             HHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998   78899999999999999998888875 99999999999999999999999999999999999999


Q ss_pred             c-CcCCCCC----------CcccccccccCccchhHHHHHHHHHHHHHHHHhhc--cccccCCCCCCccchhhhhhhhhh
Q 017429          194 A-QPAEKYP----------NLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL--PETLHRHNDDDDSCDVSYDALESA  260 (371)
Q Consensus       194 ~-~~~~~~~----------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~e~~~~~~~~~~~~~~~~~~~~~~  260 (371)
                      . +..+...          ...+|+... ..+|+.++++.++..++..+..++.  ||++++.+++++            
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~------------  243 (438)
T 3o7q_A          177 ILSNVPHQSQDVLDKMSPEQLSAYKHSL-VLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAK------------  243 (438)
T ss_dssp             HHTSSCCCCHHHHHHSCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSS------------
T ss_pred             HhcccccccccccccCCcchhhhhhhhh-hhhHHHHHHHHHHHHHHHHHHHHHHcCCccccccccccc------------
Confidence            8 4110000          000000000 0116777766665555544443333  443322111110            


Q ss_pred             hhhhhhhcccCCccccccccccchHHHHHHHHHHHhhhhhHHHHHHHH-hcCCCccCCccccchhhhHHHHHHHHHHHHH
Q 017429          261 SAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLW-ANSPKKLGGLNYSTQMVGEVLAITGFSLLVF  339 (371)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~  339 (371)
                             +.+....+++++++|.++...+..++..........+.|.| ..+.     +|+++.+++...+...++.+++
T Consensus       244 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~  311 (438)
T 3o7q_A          244 -------QGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEI-----PGMTAGFAANYLTGTMVCFFIG  311 (438)
T ss_dssp             -------TTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-----TTCCHHHHHHHHHHHHHHHHHH
T ss_pred             -------ccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-----CCcchhHHHHHHHHHHHHHHHH
Confidence                   01112345678889999999988888888888888899988 7665     6999999999999999999998


Q ss_pred             HHHHHHHHHHHhchhHHHHHHHHhhhhcc
Q 017429          340 QLSLYPFLERILGPIMVARIAGVNFEHSV  368 (371)
Q Consensus       340 ~~~~~~~l~~r~~~~~~~~~~~~~~~~~~  368 (371)
                      . ++.+++.||+++|+.+..+.++..+++
T Consensus       312 ~-~~~g~l~~r~~~~~~~~~~~~~~~~~~  339 (438)
T 3o7q_A          312 R-FTGTWLISRFAPHKVLAAYALIAMALC  339 (438)
T ss_dssp             H-HHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            8 588999999999999988877766554

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.98  E-value=1.9e-31  Score=247.14  Aligned_cols=296  Identities=11%  Similarity=0.054  Sum_probs=232.5

Q ss_pred             hhHHHHHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHH
Q 017429           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (371)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~  119 (371)
                      ++.+...++..+...+......+.+|.+.+++ .+..+      .+++.+++.++..++++++|+++||+|||++++++.
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~------~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~   99 (451)
T 1pw4_A           27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGD------LGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGL   99 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSC------HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhH------HHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHH
Confidence            45556677778888888888999999999999 99999      999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHh----HHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhc
Q 017429          120 ASVVIFNTLFGL----SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (371)
Q Consensus       120 ~~~~~~~~~~~~----~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~  194 (371)
                      ++.+++.+++++    +++++.++++|++.|++.+...+. .++++|++|+++|++++++.+.+..+|..++|.+++.+.
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  179 (451)
T 1pw4_A          100 ILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM  179 (451)
T ss_dssp             HHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999    899999999999999998887775 999999999999999999999999999999999999987


Q ss_pred             CcCCCCCCcccccccccCcc-chhHHHHHHHHHHHH-HHHHhhccccccCCCCCCccchhhhhhhhhhhhhhhhhcccCC
Q 017429          195 QPAEKYPNLFSSESLFGKFP-YFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREA  272 (371)
Q Consensus       195 ~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (371)
                      +                .++ |+.++++.+++.++. ++..+++||++++...+++++....++.+ ..++.+++....+
T Consensus       180 ~----------------~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  242 (451)
T 1pw4_A          180 A----------------WFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDD-YNEKAEQELTAKQ  242 (451)
T ss_dssp             H----------------HTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC--------------CCTH
T ss_pred             H----------------HhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhccccccc-chhhhhccccccc
Confidence            6                333 555557666665554 44567788877654322211110000000 0000000011111


Q ss_pred             ccccccccccchHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHh-
Q 017429          273 TPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL-  351 (371)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-  351 (371)
                      ...++.+++|.++...+..++..........++|.|+.+.     +|+++.+.+.+.+..+++.+++. ++.+++.||+ 
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~-~~~g~l~~~~~  316 (451)
T 1pw4_A          243 IFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEV-----KHFALDKSSWAYFLYEYAGIPGT-LLCGWMSDKVF  316 (451)
T ss_dssp             HHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTB-----SCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHTS
T ss_pred             chHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHh
Confidence            1146778899999988888888888888888999998776     79999999999999999999998 5889999999 


Q ss_pred             -chhHHHHHHHHhhh
Q 017429          352 -GPIMVARIAGVNFE  365 (371)
Q Consensus       352 -~~~~~~~~~~~~~~  365 (371)
                       ++|+.+..+..+..
T Consensus       317 ~~~~~~~~~~~~~~~  331 (451)
T 1pw4_A          317 RGNRGATGVFFMTLV  331 (451)
T ss_dssp             TTCHHHHHHHHHHHH
T ss_pred             cCCchhHHHHHHHHH
Confidence             99988776655544

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.96  E-value=4.9e-29  Score=233.57  Aligned_cols=308  Identities=14%  Similarity=0.069  Sum_probs=214.2

Q ss_pred             HHHHHHHhhcccccchhhHHHHHHhhcccccc--ccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHH
Q 017429           46 IWIIVLCTALPISSLFPFLYFMIKDFQIAKRE--EDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVV  123 (371)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~  123 (371)
                      ..+..++.+++.+.++..+|.+.++++.+...  ...+...|++.+++.+|.++|++++|+++||+|||++++++.+++.
T Consensus        17 a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~   96 (491)
T 4gc0_A           17 ATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFF   96 (491)
T ss_dssp             HHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            34456677778888888999998888654322  2234447899999999999999999999999999999999999999


Q ss_pred             HHHHHHH------------------hHHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHh
Q 017429          124 IFNTLFG------------------LSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLI  184 (371)
Q Consensus       124 ~~~~~~~------------------~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~  184 (371)
                      ++.++++                  +++|++.++++|+++|++.|...+. ..+++|+.|+++|++..++.+.+..+|..
T Consensus        97 i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~  176 (491)
T 4gc0_A           97 ISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQL  176 (491)
T ss_dssp             HHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhh
Confidence            9999988                  4789999999999999998888775 99999999999999999999999999999


Q ss_pred             HHHhhhhhhcCcCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhhccccccCCCCCCccchhhh--hhhhhhhh
Q 017429          185 IGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSY--DALESASA  262 (371)
Q Consensus       185 ~g~~i~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~--~~~~~~~~  262 (371)
                      +++.++..+..       ..++.... .+.|+.++....+..++.++..+++||+|++...+.+.+++.+  ++......
T Consensus       177 ~~~~~~~~~~~-------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~  248 (491)
T 4gc0_A          177 LVYCVNYFIAR-------SGDASWLN-TDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTL  248 (491)
T ss_dssp             HHHHHHHHHHT-------TSCTTTTT-TTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hhhhcchhhcc-------cccccccc-chhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCch
Confidence            99999888766       23333332 5567888888888888888888999999987554443332221  11100000


Q ss_pred             ------hhh--hhcccCCccccccccccchHHHHHHHHHHHhhh-hhHHHHHHHHhcCCCccCCccccchhhhHHHHHHH
Q 017429          263 ------EVK--EEEGREATPKKSLLKNWPLMSSIIVYCVFSLHD-MAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITG  333 (371)
Q Consensus       263 ------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~  333 (371)
                            +.+  .++.+........++.+..........+..... .....+.+.....      .+.+...........+
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~  322 (491)
T 4gc0_A          249 ATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKT------LGASTDIALLQTIIVG  322 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------SSCCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHh------cCCCccchhhHHHHHH
Confidence                  000  000111111222233333333333333222222 2222233332222      4666666666777777


Q ss_pred             HHHHHHHHHHHHHHHHHhchhHHHHHHHHhhhhcc
Q 017429          334 FSLLVFQLSLYPFLERILGPIMVARIAGVNFEHSV  368 (371)
Q Consensus       334 ~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~  368 (371)
                      +..+++. ++..++.||+|||+.+..+.....+++
T Consensus       323 ~~~~~~~-~~~~~l~dr~Grr~~~~~~~~~~~~~~  356 (491)
T 4gc0_A          323 VINLTFT-VLAIMTVDKFGRKPLQIIGALGMAIGM  356 (491)
T ss_dssp             HHHHHHH-HHHHHHHHHHCSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH-HHHHHHHHhhcCcchhccchHHHHHHH
Confidence            7888877 588999999999999887776665544

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.96  E-value=5.4e-29  Score=225.23  Aligned_cols=260  Identities=16%  Similarity=0.246  Sum_probs=215.4

Q ss_pred             HHHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHH
Q 017429           44 FSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVV  123 (371)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~  123 (371)
                      +.+++..++..+......+.+|.+.+++|.+..+      .+++.+++.++..+++++.|+++||+|||+++..+.++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~   76 (375)
T 2gfp_A            3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGA------VQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFM   76 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHH------HHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence            3456667777788888889999999999999999      9999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCCCCCC
Q 017429          124 IFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPN  202 (371)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~~~~~  202 (371)
                      ++.++..++++++.+++.|++.|++.+...+. .+++.|++|+++|++++++.+.+..+|..++|.+++.+.+       
T Consensus        77 ~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~-------  149 (375)
T 2gfp_A           77 LATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT-------  149 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSC-------
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-------
Confidence            99999999999999999999999998888876 9999999999999999999999999999999999999987       


Q ss_pred             cccccccccCccchhHHHHHHHHHHHHHH-HHhhccccccCCCCCCccchhhhhhhhhhhhhhhhhcccCCccccccccc
Q 017429          203 LFSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKN  281 (371)
Q Consensus       203 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (371)
                               .++|+..+.+.++..++..+ ..+.+||+++++++++                      +.....++.+++
T Consensus       150 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~  198 (375)
T 2gfp_A          150 ---------MWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAPRT----------------------RLLTSYKTLFGN  198 (375)
T ss_dssp             ---------HHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCCCC----------------------CTTTCSTHHHHH
T ss_pred             ---------hccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCcccc----------------------cHHHHHHHHhcC
Confidence                     56677777777766665544 4566777654322110                      112355677888


Q ss_pred             cchHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 017429          282 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGP  353 (371)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~  353 (371)
                      |.++...+..++..........+.|.|..+.     +|+++.+.+.+.+...++.+++. ++.+++.||.++
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~g~~~~~~~~~~~~~~-~~~~~l~~r~~~  264 (375)
T 2gfp_A          199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAV-----LGLSSMTVSILFILPIPAAFFGA-WFAGRPNKRFST  264 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHH-----HHHHHHHHHHHHHTHHHHHHHHH-HHHHTTTTHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence            8888888777777666666655555544433     78899999999999999999988 478888888887

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.94  E-value=6.1e-26  Score=212.53  Aligned_cols=300  Identities=14%  Similarity=0.142  Sum_probs=199.0

Q ss_pred             hHHHHHHHHHHHhhcccccchhhHH-HHHHh-----hccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhh-cCCch
Q 017429           41 TELFSIWIIVLCTALPISSLFPFLY-FMIKD-----FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR-YGRKP  113 (371)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~Grr~  113 (371)
                      +.++.++...++.........+.++ ++.++     +|.+..+      .+++.+++.++..+++++.|+++|| +|||+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~   86 (491)
T 4aps_A           13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRAT------AASIMAIYASMVYLSGTIGGFVADRIIGARP   86 (491)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhccccchH
Confidence            4455556666666666665655555 44455     8999999      9999999999999999999999999 89999


Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccc--hhhhhHhhhhhhhhHHhHHHhhh
Q 017429          114 VIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEH--QALGLSTVSTAWGIGLIIGPALG  190 (371)
Q Consensus       114 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~g~~i~  190 (371)
                      ++..+.++.+++.++++++++++.+++.|++.|++.+...+. .++++|++|+++  |+.++++++.+.++|..++|.++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  166 (491)
T 4aps_A           87 AVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIV  166 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998888775 999999999988  77788889999999999999999


Q ss_pred             hhhcCcCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhhc-cccccCCCCCCcc---chhhhhhhhh-------
Q 017429          191 GFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL-PETLHRHNDDDDS---CDVSYDALES-------  259 (371)
Q Consensus       191 ~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~~---~~~~~~~~~~-------  259 (371)
                      +.+.+                .++|+.++++.++..++.++..++. |+..++...++++   .++..+..+.       
T Consensus       167 ~~l~~----------------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~  230 (491)
T 4aps_A          167 GAAQE----------------AAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAG  230 (491)
T ss_dssp             HHHHH----------------HSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHH
T ss_pred             HHHHh----------------hhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHH
Confidence            99987                5667777777766655554443332 3222211111111   1111010000       


Q ss_pred             --------hhhhh---h-------------------hhcccCCccccccccccchHHHHHHHHHHHhhhhhHHHHHHHHh
Q 017429          260 --------ASAEV---K-------------------EEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWA  309 (371)
Q Consensus       260 --------~~~~~---~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (371)
                              ...+.   +                   ...++......+..+....+...+..++...........++.|.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (491)
T 4aps_A          231 FIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFA  310 (491)
T ss_dssp             HHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHH
T ss_pred             HHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence                    00000   0                   00000011111111222233444444444445555566677777


Q ss_pred             cCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHH-----HHHHhhhhcc
Q 017429          310 NSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVAR-----IAGVNFEHSV  368 (371)
Q Consensus       310 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~-----~~~~~~~~~~  368 (371)
                      .+.     .+.+....+.+.....+..+++. ++.+++.||++||+...     .+.++..++.
T Consensus       311 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~  368 (491)
T 4aps_A          311 AER-----VDSSWFPVSWFQSLNPLFIMLYT-PFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSF  368 (491)
T ss_dssp             HHS-----CCCSSSCSGGGTTHHHHHHHHHH-HHHHHHHHHTTTC---CHHHHHHHHHHHHHHH
T ss_pred             HHH-----hccCccCHHHHhccchHHHHHHH-HHHHHHHHHHhccCCCchHHHHHHHHHHHHHH
Confidence            655     55565677777788888888887 47788999999876544     5555555443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.89  E-value=7.9e-23  Score=187.37  Aligned_cols=288  Identities=11%  Similarity=0.119  Sum_probs=178.8

Q ss_pred             hHHHHHHHHHHHhhcccccchhhHHHHH-HhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHH
Q 017429           41 TELFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (371)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~  119 (371)
                      +.++......++.........+.+|.+. +++|.+..+      .|++.+++.++..++++++|+++||+|||++++++.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~------~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~   80 (417)
T 2cfq_A            7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSD------TGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWII   80 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTT------SHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence            4455555555555555666678888655 568999999      999999999999999999999999999999999988


Q ss_pred             HHHHHHHH---HHHhHHHHH-HHHHHHHHHhhhccchhHH-HHHHhhhccc--cchhhhhHhhhhhhhhHHhHHHhhhhh
Q 017429          120 ASVVIFNT---LFGLSVNFW-MAVLTRFLLGSLNGLLGPI-KAYACEIFRE--EHQALGLSTVSTAWGIGLIIGPALGGF  192 (371)
Q Consensus       120 ~~~~~~~~---~~~~~~~~~-~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~g~~i~~~  192 (371)
                      .+.+++..   ...+.+... .++..+.+.|++.+...+. .....++.++  ++|+...+.......+|..++|.++++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~  160 (417)
T 2cfq_A           81 TGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGI  160 (417)
T ss_dssp             HHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHH
Confidence            77654321   112222211 2344555656554443332 3334444433  456777788888889999999999999


Q ss_pred             hcCcCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhhhhhhhhcccCC
Q 017429          193 LAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREA  272 (371)
Q Consensus       193 l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (371)
                      +.+                 ++|+.++++.++..++..+..++.+|++++..+++++.+             ++.++...
T Consensus       161 l~~-----------------~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~  210 (417)
T 2cfq_A          161 MFT-----------------INNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVG-------------ANHSAFSL  210 (417)
T ss_dssp             HHH-----------------HCSHHHHTTTTTTTTTHHHHSCSSCCCCSCSSCSSSSSS-------------SCCCCCCH
T ss_pred             HHH-----------------hchhHHHHHHHHHHHHHHHHHHHcCcccccccccccccc-------------cccccccH
Confidence            874                 234555555554444444444444433221110000000             00000111


Q ss_pred             ccccccccccchHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 017429          273 TPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILG  352 (371)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~  352 (371)
                      ...++++++|+++...+..+........+..++|.|+.+...  ..+.+....+...+...++.+++. ++.+++.||++
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~-~~~g~l~dr~g  287 (417)
T 2cfq_A          211 KLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFA--TGEQGTRVFGYVTTMGELLNASIM-FFAPLIINRIG  287 (417)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS--SHHHHTHHHHHHHHHHHHHHHHHH-HHHHHHHHHHC
T ss_pred             HHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccCCChhHHHHHHHHHHHHHHHHH-HHHHHHHHHhc
Confidence            234567788888776665554444444555567777654311  122345566778888778888877 58899999999


Q ss_pred             hhHHHHHHHHhhhhc
Q 017429          353 PIMVARIAGVNFEHS  367 (371)
Q Consensus       353 ~~~~~~~~~~~~~~~  367 (371)
                      +|+.+..+.++..++
T Consensus       288 ~~~~l~~~~~~~~~~  302 (417)
T 2cfq_A          288 GKNALLLAGTIMSVR  302 (417)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999888777665554

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.86  E-value=1.7e-21  Score=183.80  Aligned_cols=171  Identities=15%  Similarity=0.199  Sum_probs=141.9

Q ss_pred             HHHHHHHHHHhhcccccchhhHH-HHHHhhc------cccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhc-CCchH
Q 017429           43 LFSIWIIVLCTALPISSLFPFLY-FMIKDFQ------IAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-GRKPV  114 (371)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-Grr~~  114 (371)
                      ++.+++..++.....+...+.++ ++.+++|      .+..+      .+++.+++.++..+++++.|+++||+ |||++
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~------~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~   87 (524)
T 2xut_A           14 IPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAV------AKDVFHSFVIGVYFFPLLGGWIADRFFGKYNT   87 (524)
T ss_dssp             CTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTT------HHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence            33444555555555555566666 4567789      99998      99999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHh---hhhhhhhHHhHHHhh
Q 017429          115 IIMGTASVVIFNTLFGLSV-NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLST---VSTAWGIGLIIGPAL  189 (371)
Q Consensus       115 l~~~~~~~~~~~~~~~~~~-~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~---~~~~~~~g~~~g~~i  189 (371)
                      +.++.++.+++.+++++++ +++.+++.|++.|++.+...+. .++++|++|+++|+++.+.   .+.+.++|..++|.+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~  167 (524)
T 2xut_A           88 ILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLS  167 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998 9999999999999998888775 9999999999999876666   888999999999999


Q ss_pred             hhhhcCcCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhh
Q 017429          190 GGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFW  235 (371)
Q Consensus       190 ~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (371)
                      ++.+.+                ..+|+.++.+.++..++..+..++
T Consensus       168 ~~~l~~----------------~~g~~~~f~~~~~~~~~~~~~~~~  197 (524)
T 2xut_A          168 MPLLLK----------------NFGAAVAFGIPGVLMFVATVFFWL  197 (524)
T ss_dssp             STHHHH----------------TSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHhc----------------cccHHHHHHHHHHHHHHHHHHHHH
Confidence            999987                556777777776666555544433

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.62  E-value=2.4e-15  Score=138.79  Aligned_cols=175  Identities=12%  Similarity=0.061  Sum_probs=140.5

Q ss_pred             hHHHHHHHHHHHhhcccccchhhHHHHHHh-hccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhc--CCchHHHH
Q 017429           41 TELFSIWIIVLCTALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY--GRKPVIIM  117 (371)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--Grr~~l~~  117 (371)
                      +.++...+..++............|.+.++ +|.+..+      .+++.+...++..++.++.|++.||+  |||+.+..
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~  325 (451)
T 1pw4_A          252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDK------SSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGV  325 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHH
Confidence            455556666666666666677788877766 8999888      99999999999999999999999999  99999888


Q ss_pred             HHHHHH-HHHHHHHhH--HHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhh-HHhHHHhhhhh
Q 017429          118 GTASVV-IFNTLFGLS--VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGI-GLIIGPALGGF  192 (371)
Q Consensus       118 ~~~~~~-~~~~~~~~~--~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~i~~~  192 (371)
                      +.++.. ++.++..+.  .+.+.+.+..++.|++.+...+. ..++.|.+|+++|+++.++.+....+ |..++|.+.+.
T Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~  405 (451)
T 1pw4_A          326 FFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGY  405 (451)
T ss_dssp             HHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            877766 666665554  36777778888889887776665 89999999999999999999999999 99999999999


Q ss_pred             hcCcCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhhcc
Q 017429          193 LAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLP  237 (371)
Q Consensus       193 l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (371)
                      +.+                ..+|...+++.+++.++..+..++.+
T Consensus       406 l~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~~  434 (451)
T 1pw4_A          406 TVD----------------FFGWDGGFMVMIGGSILAVILLIVVM  434 (451)
T ss_dssp             HHH----------------SSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHH----------------hcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            998                55666667777766666655544443

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.54  E-value=7.9e-14  Score=128.13  Aligned_cols=146  Identities=10%  Similarity=0.044  Sum_probs=116.8

Q ss_pred             hHHHHHHHHHHHhhcccccchhhHHHH-HHh-hccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHH
Q 017429           41 TELFSIWIIVLCTALPISSLFPFLYFM-IKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (371)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~  118 (371)
                      +.++...+..++............|.+ .++ +|.+..+      .++..+...++..++.++.|+++||+|||+++..+
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~  331 (438)
T 3o7q_A          258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGF------AANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAY  331 (438)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhH------HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence            344444455555555555566777766 555 4999888      99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcC
Q 017429          119 TASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (371)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~  195 (371)
                      .++.+++.++..+.++.+.++.. ++.|++.+...+. .++..|.+|++ |+.+.++.. ...+|..++|.+.|.+.+
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~  406 (438)
T 3o7q_A          332 ALIAMALCLISAFAGGHVGLIAL-TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSD  406 (438)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHH-HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHH
Confidence            99998888888887776655444 7788887777775 88889999976 888888776 556999999999999998

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.52  E-value=8.3e-14  Score=127.35  Aligned_cols=142  Identities=18%  Similarity=0.125  Sum_probs=112.6

Q ss_pred             hHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhccchhH-HHHHHhhh
Q 017429           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEI  162 (371)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~-~~~~~~~~  162 (371)
                      .++..++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+...+ ...+++|.
T Consensus       261 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  340 (417)
T 2cfq_A          261 FGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQ  340 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67777888888889999999999999999999998888888777777777777777777777777655555 48899999


Q ss_pred             ccccchhhhhHh-hhhhhhhHHhHHHhhhhhhcCcCCCCCCcccccccccCccchhHHHHHHHHHHHHHHH-Hhhccccc
Q 017429          163 FREEHQALGLST-VSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPETL  240 (371)
Q Consensus       163 ~~~~~r~~~~~~-~~~~~~~g~~~g~~i~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~  240 (371)
                      +|++.|+++.+. ++....+|..++|.++|.+.+                .+++...+.+.+++.++..+. .+..||++
T Consensus       341 ~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~----------------~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~  404 (417)
T 2cfq_A          341 FEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE----------------SIGFQGAYLVLGLVALGFTLISVFTLSGPG  404 (417)
T ss_dssp             SCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHH----------------HSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred             CCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHH----------------hcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence            999999999998 488888999999999999987                455666667666666655544 44455544


Q ss_pred             c
Q 017429          241 H  241 (371)
Q Consensus       241 ~  241 (371)
                      +
T Consensus       405 ~  405 (417)
T 2cfq_A          405 P  405 (417)
T ss_dssp             T
T ss_pred             c
Confidence            3

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.42  E-value=4.8e-12  Score=118.03  Aligned_cols=183  Identities=12%  Similarity=0.050  Sum_probs=122.8

Q ss_pred             HHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHH
Q 017429           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (371)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~  124 (371)
                      ......+...........+.+.+.+..+.+...      .........+...++.++.+++.||+|||+.++.+.....+
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~  354 (491)
T 4gc0_A          281 GVMLSIFQQFVGINVVLYYAPEVFKTLGASTDI------ALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAI  354 (491)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhHHHhcchHHHHhcCCCccc------hhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHH
Confidence            344444455555556666677888888877766      66667777888899999999999999999999999888887


Q ss_pred             HHHHHHhHH-----HHHHHHHHH-HHHhhhccchhHHHHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcCcCC
Q 017429          125 FNTLFGLSV-----NFWMAVLTR-FLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE  198 (371)
Q Consensus       125 ~~~~~~~~~-----~~~~~~~~r-~l~G~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~~~~  198 (371)
                      +.+..+...     +...+...- +..+++.+.....+.+.+|.+|.+.|++++++......+|+.+++.+.+.+.+.. 
T Consensus       355 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~-  433 (491)
T 4gc0_A          355 GMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNS-  433 (491)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHH-
T ss_pred             HHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            776655421     122222222 2223333333334899999999999999999999999999999888877765410 


Q ss_pred             CCCCcccccccccCccchhHHHHHHHHHHHH-HHHHhhccccccCC
Q 017429          199 KYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRH  243 (371)
Q Consensus       199 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~  243 (371)
                             |.  ....++...+++.++++++. ++.++++|||+.+.
T Consensus       434 -------~~--~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~t  470 (491)
T 4gc0_A          434 -------WL--VAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKT  470 (491)
T ss_dssp             -------HH--HHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCC
T ss_pred             -------HH--HhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCC
Confidence                   00  00122333445545555444 45678899998653

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.41  E-value=2.1e-12  Score=120.47  Aligned_cols=145  Identities=10%  Similarity=-0.017  Sum_probs=109.8

Q ss_pred             HHHHHHHHhhcccccchhhHHHHHH-hhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHH-----HH
Q 017429           45 SIWIIVLCTALPISSLFPFLYFMIK-DFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII-----MG  118 (371)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~-----~~  118 (371)
                      ..++..++...........+|.+.+ .++.+..+      .++..+...++..++.++.|++.||+|||+...     .+
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~  360 (491)
T 4aps_A          287 PLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFP------VSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVG  360 (491)
T ss_dssp             HHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSC------SGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHhccCccC------HHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHH
Confidence            3333344444444445556665554 46666556      788888889999999999999999999987655     66


Q ss_pred             HHHHHHHHHHHHhHH---------HHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHh
Q 017429          119 TASVVIFNTLFGLSV---------NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPA  188 (371)
Q Consensus       119 ~~~~~~~~~~~~~~~---------~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~  188 (371)
                      .++.+++.++.....         +.+.+++..++.|++.+...+. ..++.|.+|++.|+++.++.+....+|..++|.
T Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~  440 (491)
T 4aps_A          361 LMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQ  440 (491)
T ss_dssp             HHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666655543         6677778888899988876664 999999999999999999999999999999999


Q ss_pred             hhhhhcC
Q 017429          189 LGGFLAQ  195 (371)
Q Consensus       189 i~~~l~~  195 (371)
                      +.+.+.+
T Consensus       441 ~~~~~~~  447 (491)
T 4aps_A          441 LVTLYNA  447 (491)
T ss_dssp             HGGGGGG
T ss_pred             HHHHHhc
Confidence            9988875

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.10  E-value=1.1e-11  Score=111.36  Aligned_cols=145  Identities=13%  Similarity=0.078  Sum_probs=106.2

Q ss_pred             HHHHHHHHHHHhhcccccchhhHHHHHH-hhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHH
Q 017429           42 ELFSIWIIVLCTALPISSLFPFLYFMIK-DFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (371)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~  120 (371)
                      .++...+..++............|.+.+ ++|.+..+      .+++.+...++..++.++.|++.||+|++  +..+..
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~  271 (375)
T 2gfp_A          200 GFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMT------VSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVI  271 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHH------HHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence            3444444445555554555555565444 48888888      99999999999999999999999999883  233332


Q ss_pred             H-HHHHHH--HHHh--HHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhc
Q 017429          121 S-VVIFNT--LFGL--SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (371)
Q Consensus       121 ~-~~~~~~--~~~~--~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~  194 (371)
                      . ...+..  ....  .++.+.+++..++.|++.+...+. ..++.|..| ++|+++.++.+....+|..++|.+.+.+.
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~  350 (375)
T 2gfp_A          272 CCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLP  350 (375)
T ss_dssp             HHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHH
T ss_pred             HHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            2 222221  2222  246677778888889988777775 999999998 88999999999999999999999999987


Q ss_pred             C
Q 017429          195 Q  195 (371)
Q Consensus       195 ~  195 (371)
                      +
T Consensus       351 ~  351 (375)
T 2gfp_A          351 Q  351 (375)
T ss_dssp             H
T ss_pred             c
Confidence            6

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.86  E-value=5.5e-09  Score=98.12  Aligned_cols=112  Identities=13%  Similarity=0.025  Sum_probs=85.0

Q ss_pred             hHHHHHHHHHHHHHHhHHHHhhh----hhcCC----chHHHHHHHHHHHHHHHHHhH---------HHHHHHHHHHHHHh
Q 017429           84 AGYVGSSFMFGRALTSVFWGLVA----DRYGR----KPVIIMGTASVVIFNTLFGLS---------VNFWMAVLTRFLLG  146 (371)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~g~l~----dr~Gr----r~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~r~l~G  146 (371)
                      .+++.....++..++.++.+++.    ||.|+    ++.+.++.++.+++.++.++.         .+.+.+++..++.|
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g  416 (524)
T 2xut_A          337 PAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLT  416 (524)
T ss_dssp             HHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHH
Confidence            56666666666677777777764    55543    345667777777777666653         36677778888999


Q ss_pred             hhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhhcC
Q 017429          147 SLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (371)
Q Consensus       147 ~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l~~  195 (371)
                      ++.+...+. ..++.|..|+++|++++|+.+....+|..++|.+.+.+.+
T Consensus       417 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~  466 (524)
T 2xut_A          417 FGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKS  466 (524)
T ss_dssp             HHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            988887775 8999999999999999999999999999999999999876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	371
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	4e-10
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	2e-07

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 58.5 bits (140), Expect = 4e-10
 Identities = 37/284 (13%), Positives = 73/284 (25%), Gaps = 20/284 (7%)

Query: 84  AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRF 143
            G+  S        +    G V+DR   +  +  G           G       ++   F
Sbjct: 61  LGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMF 120

Query: 144 LLGSLNGLLGPIKAYAC-----EIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE 198
           +L  L G    +    C       + ++ +   +S  + A  +G  I P L         
Sbjct: 121 VLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLL------ 174

Query: 199 KYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALE 258
                     +     +       +  A  V + AF +     +        +   D  +
Sbjct: 175 ---------GMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPD 225

Query: 259 SASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGL 318
             + + ++E   +    + +L N  L    I      L      +    +    K     
Sbjct: 226 DYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALD 285

Query: 319 NYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGV 362
             S        A    +LL   +S   F        +       
Sbjct: 286 KSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVT 329

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 49.8 bits (117), Expect = 2e-07
 Identities = 20/211 (9%), Positives = 55/211 (26%), Gaps = 14/211 (6%)

Query: 42  ELFSIWIIVLCTALPISSLFPFL-YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSV 100
             +   +        + + FPF   ++     I+       S  G + ++      L   
Sbjct: 8   NFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHIS------KSDTGIIFAAISLFSLLFQP 61

Query: 101 FWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP------ 154
            +GL++D+ G +  ++     +++    F + +   +      +   + G+         
Sbjct: 62  LFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAG 121

Query: 155 -IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKF 213
                A                     +G  +G ++ G +     ++     S       
Sbjct: 122 APAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILA 181

Query: 214 PYFLPCLCISLFAFGVTIAAFWLPETLHRHN 244
                    +  +  V  A            
Sbjct: 182 VLLFFAKTDAPSSATVANAVGANHSAFSLKL 212

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	371
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.97
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.86
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.57
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.49

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=4.2e-30  Score=235.23  Aligned_cols=288  Identities=11%  Similarity=0.036  Sum_probs=215.1

Q ss_pred             ChhHHHHHHHHHHHhhcccccchhhHHHHHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHH
Q 017429           39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (371)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~  118 (371)
                      +|..+..+++..+...++...+....|.+. |+|++.++      .|++.+++.+++.++++++|+++||+|||+++.++
T Consensus        23 ~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~------~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~   95 (447)
T d1pw4a_          23 RWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGD------LGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAG   95 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSC------HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence            344455566666666677677777777664 68999999      99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhHH----HHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhhHHhHHHhhhhhh
Q 017429          119 TASVVIFNTLFGLSV----NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL  193 (371)
Q Consensus       119 ~~~~~~~~~~~~~~~----~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~i~~~l  193 (371)
                      .++.+++.++++++.    +++.+++.|++.|++.+...+. ..+++|++|+++|++++++.+.+..+|..++|.+++.+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~  175 (447)
T d1pw4a_          96 LILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG  175 (447)
T ss_dssp             HHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred             HHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhH
Confidence            999999998887754    6778999999999998887775 99999999999999999999999999999999999887


Q ss_pred             cCcCCCCCCcccccccccCccchhHHHHHHHHHHHH-HHHHhhccccccCCCCCCccchhhhhhhhhhhhhhhhhcccCC
Q 017429          194 AQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREA  272 (371)
Q Consensus       194 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (371)
                      ...               ..+|+..+++.+++.++. ++..++.+|+++.......++... +..++..++.+++.....
T Consensus       176 ~~~---------------~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  239 (447)
T d1pw4a_         176 MAW---------------FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKN-DYPDDYNEKAEQELTAKQ  239 (447)
T ss_dssp             HHH---------------TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCC-C-------------CCTH
T ss_pred             hhh---------------hhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhh-hcccchhhccccccchhh
Confidence            662               223444445555555444 445556666654433222211111 111111111122222233


Q ss_pred             ccccccccccchHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 017429          273 TPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILG  352 (371)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~  352 (371)
                      ...+..++++.++......++..........+.+.|+.+.     ++++..+.+.......+..+++. ++.+++.||.+
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~  313 (447)
T d1pw4a_         240 IFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEV-----KHFALDKSSWAYFLYEYAGIPGT-LLCGWMSDKVF  313 (447)
T ss_dssp             HHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTB-----SCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHTS
T ss_pred             HHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccc-----cccccchhhhhhhcchhhhhhhh-hhhhhhhhhcc
Confidence            3456678888888888888888888888888999988776     78999999999999999999988 58899999998


Q ss_pred             hhH
Q 017429          353 PIM  355 (371)
Q Consensus       353 ~~~  355 (371)
                      +++
T Consensus       314 ~~~  316 (447)
T d1pw4a_         314 RGN  316 (447)
T ss_dssp             TTC
T ss_pred             ccc
Confidence            764

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=6.6e-21  Score=170.89  Aligned_cols=290  Identities=11%  Similarity=0.094  Sum_probs=186.7

Q ss_pred             hhHHHHHHHHHHHhhcccccchhhHHH-HHHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHH
Q 017429           40 ITELFSIWIIVLCTALPISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (371)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~  118 (371)
                      .++++.+.+..++..+..+...+.+|. +.+++|.|..+      .|++.+++.++..++++++|+++||+|||++++++
T Consensus         6 n~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~------~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~   79 (417)
T d1pv7a_           6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSD------TGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWI   79 (417)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH------HHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence            366777777778888888888888886 55678999999      99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhHHHHHHH----HHHHHHHhhhccchhH-HHHHHhhhcc--ccchhhhhHhhhhhhhhHHhHHHhhhh
Q 017429          119 TASVVIFNTLFGLSVNFWMA----VLTRFLLGSLNGLLGP-IKAYACEIFR--EEHQALGLSTVSTAWGIGLIIGPALGG  191 (371)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~----~~~r~l~G~~~~~~~~-~~~~~~~~~~--~~~r~~~~~~~~~~~~~g~~~g~~i~~  191 (371)
                      ..+..++..+.....+....    ++.+.+.+.+.+.... ......+..+  .+++.+..+........+..++|.+++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (417)
T d1pv7a_          80 ITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVG  159 (417)
T ss_dssp             HHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhcccccccccccc
Confidence            99888888887776554443    3444444443333322 3333333332  234556667777888889999999999


Q ss_pred             hhcCcCCCCCCcccccccccCccchhHHHHHHHHHHHHHHHHhhccccccCCCCCCccchhhhhhhhhhhhhhhhhcccC
Q 017429          192 FLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGRE  271 (371)
Q Consensus       192 ~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (371)
                      .+.+                ..+++..........+...+..+..+|++.....++++++..              +...
T Consensus       160 ~l~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~  209 (417)
T d1pv7a_         160 IMFT----------------INNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANH--------------SAFS  209 (417)
T ss_dssp             HHHH----------------HCHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHSCC--------------CCCC
T ss_pred             cccc----------------ccccccccchhhHHHHHHHHHHHHhcccccchhhhhhhhhhc--------------cccc
Confidence            9875                222333334444444445555666666655443322111110              1111


Q ss_pred             CccccccccccchHHHHHHHHHHHhhhhhHHHHHHHHhcCCCccCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017429          272 ATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL  351 (371)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~  351 (371)
                      .....+..+++..+......................+....  ....+.+....+.......++..++. .+.+++.||.
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~r~  286 (417)
T d1pv7a_         210 LKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSF--FATGEQGTRVFGYVTTMGELLNASIM-FFAPLIINRI  286 (417)
T ss_dssp             HHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--SSCHHHHHHHHHHHHHHHHHHHHHHH-TTHHHHHHHH
T ss_pred             ccccccccccccccchhhhhHHHHHHHHhhhcccccccccc--ccccccchhhhcccccccccccccch-hhhhhhhccc
Confidence            11222333444444444443333333333433334333322  22256677778888888888888888 5889999999


Q ss_pred             chhHHHHHHHHhhhhcc
Q 017429          352 GPIMVARIAGVNFEHSV  368 (371)
Q Consensus       352 ~~~~~~~~~~~~~~~~~  368 (371)
                      ++++.+..+.++..++.
T Consensus       287 ~~~~~~~~~~~~~~~~~  303 (417)
T d1pv7a_         287 GGKNALLLAGTIMSVRI  303 (417)
T ss_dssp             CHHHHHHHHHHHHHHHH
T ss_pred             ccccchhhhHHHHHHhh
Confidence            99999988887766654

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=1.1e-15  Score=136.29  Aligned_cols=140  Identities=18%  Similarity=0.136  Sum_probs=119.2

Q ss_pred             hHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhccchhHH-HHHHhhh
Q 017429           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEI  162 (371)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~  162 (371)
                      .+...+...++..++..+.+++.||+|+|+.+.++.++.+++.+...+.++.+.+++..++.|++.+...+. .+++.|.
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~  340 (417)
T d1pv7a_         261 FGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQ  340 (417)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            677778888899999999999999999999999999999999999999999999999999999998887775 9999999


Q ss_pred             ccccchhhhhHhh-hhhhhhHHhHHHhhhhhhcCcCCCCCCcccccccccCccchhHHHHHHHHHHHHHH-HHhhcccc
Q 017429          163 FREEHQALGLSTV-STAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPET  239 (371)
Q Consensus       163 ~~~~~r~~~~~~~-~~~~~~g~~~g~~i~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~  239 (371)
                      +|++.|++..++. +....+|..++|.++|++.+                .++++..+++.+++.++..+ ..+.++++
T Consensus       341 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~l~~~  403 (417)
T d1pv7a_         341 FEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE----------------SIGFQGAYLVLGLVALGFTLISVFTLSGP  403 (417)
T ss_dssp             SCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHH----------------HHCHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred             CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHCHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            9999999999985 56778999999999999998                56666666777666665544 44555443

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=6.2e-14  Score=126.68  Aligned_cols=170  Identities=11%  Similarity=0.004  Sum_probs=120.0

Q ss_pred             hHHHHHHHHHHHhhcccccchhhHHHH-HHhhccccccccchhhhHHHHHHHHHHHHHHhHHHHhhhhhcCCchHHHHHH
Q 017429           41 TELFSIWIIVLCTALPISSLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (371)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~  119 (371)
                      +.++......++............|.+ .+.++.+..+      .++..+...++..++.++.|+++||++||+......
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  322 (447)
T d1pw4a_         249 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDK------SSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGV  322 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred             chHHHHHHHhhhhhhhhhcchhhhhhhcccccccccch------hhhhhhcchhhhhhhhhhhhhhhhhccccccccccc
Confidence            444444444455544444555556644 4557888888      899999999999999999999999999876554443


Q ss_pred             HHHHHHHHHHHh-----HHHHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHhhhhhhhh-HHhHHHhhhhh
Q 017429          120 ASVVIFNTLFGL-----SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGI-GLIIGPALGGF  192 (371)
Q Consensus       120 ~~~~~~~~~~~~-----~~~~~~~~~~r~l~G~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~i~~~  192 (371)
                      +...+.......     ..+.+..++.-++.|++.+...+. ..+..|.+|++.|+++.|+.+....+ |.+++|.+.|.
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~  402 (447)
T d1pw4a_         323 FFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGY  402 (447)
T ss_dssp             HHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333322222211     356777777778888877666664 88999999999999999998877666 56778999999


Q ss_pred             hcCcCCCCCCcccccccccCccchhHHHHHHHHHHHHHHH
Q 017429          193 LAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIA  232 (371)
Q Consensus       193 l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (371)
                      +.+                .++|...+++.+.+.++..+.
T Consensus       403 ~~~----------------~~g~~~~~~~~~~~~~~~~~~  426 (447)
T d1pw4a_         403 TVD----------------FFGWDGGFMVMIGGSILAVIL  426 (447)
T ss_dssp             HHH----------------SSCSHHHHHHHHHHHHHHHHH
T ss_pred             HHH----------------HhChHHHHHHHHHHHHHHHHH
Confidence            998                556666666666555554443