Citrus Sinensis ID: 017436

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-
Protein Sequence
MDYQLSDSSGTDDDLPPSHHNRFQRGVRPTGNGRSAVIGSASLPRMQNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKASGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPSPGMHPSVQPSSSALRPGPPPGSKGKKPKSFSTGLAGRGQVANRGSSGAFPANGPSEAATYNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDIKWEGDEPGISRKGGRPGPGRGTKKPLTRGGGVSGAGRGRGTMKPKKGFPFSQNGIGKKPLGDIEILHTETLIKEVCGQMKKLYRNCC
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHHHccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccEEEEEEEEccccccEEEEEcccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccHHHHHHHHHccccHHHHHHHHHHHcccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccEEEEEEEccccccccEEEEEEcccccccEEEEEcccccHHHcEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mdyqlsdssgtdddlppshhnrfqrgvrptgngrsavigsaslprmqndmATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRkasglqpgmpsipqpvhdpapsptvsasrkktktsqsvaslstgapspgmhpsvqpsssalrpgpppgskgkkpksfstglagrgqvanrgssgafpangpseaatynpligrkvwtrwpednhfyeavitdynpnegrhaLVYDINTADETWewvnlkeispedikwegdepgisrkggrpgpgrgtkkpltrgggvsgagrgrgtmkpkkgfpfsqngigkkplgdieILHTETLIKEVCGQMKKLYRNCC
Flexible Loop (DISEMBL)
mdyqlsdssgtdddlppshhnrfqrgvrptgngRSAVIGSASLPRMQNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRkelrvsdeehrellskvnaddiiLRIREWRKASGLQPGMPSIPQPVHDPAPSPTVSasrkktktsqsvaslstgapspgmhPSVQPSSSALRPGPPPGSKGKKPKSFSTGLAGRGQVANRGSSGAFPANGPSEAATYNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNlkeispedikwegdepgisrkggrpgpgrgtkkpltrgggvsgagrgrgtmkpkkgfpfsqngigkkpLGDIEILHTETLIKEVCGQMKKLYRNCC
Low Complexity Region (SEG)
MDYQLSDSSGTDDDLPPSHHNRFQRGVRPTGNGRSAVIGSASLPRMQNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKASGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPSPGMHPSVQPSSSALRpgpppgskgkkpksFSTGLAGRGQVANRGSSGAFPANGPSEAATYNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDIKWEGDEPGISrkggrpgpgrgtkkpLTrgggvsgagrgrgTMKPKKGFPFSQNGIGKKPLGDIEILHTETLIKEVCGQMKKLYRNCC
Disordered region (IsUnstruct)
*************************************************************YSSVLRAFKAQSDAITWEKESLITELRK***********LLSKVNADDIILRIREWR*********************************************************************************************************TYNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISP************************************************************KPLGDIEILHTETLIKEVCGQMKKLYR***
Disordered Region (DISOPRED)
*****************************************************IHSVEQDAYSSVLRAFKA***********************************************************************************************************************************************************PLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE*******************************************************************LHTETLIKEVCGQMKKLYRNCC
Disordered Region (DISEMBL)
****************PSHHNRFQRGVRPTGNGRSAVIGSASLPRMQNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKASGLQPGMPSIPQP***************************************************************TGLAGRGQVANRGSSGAFPANGPSEAATYNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDIKWEGDEPGISRKGGRPGPGRGTKKPLTRGGGVSGAGRGRGTMKPKKGFPFSQNGIGKKPLGDIEILHTETLIKEVCGQMKKLYRNCC
Disordered Region (DISPRO)
*************DLPPSH********************SASLPRMQNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKA********************************************************************************************************YNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDIKWEGDEPGISRK**********************************************PLGDIEILHTETLIKEVCGQMKKLYRNCC
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDYQLSDSSGTDDDLPPSHHNRFQRGVRPTGNGRSAVIGSASLPRMQNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLxxxxxxxxxxxxxxxxxxxxxVNADDIILRIREWRKASGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPSPGMHPSVQPSSSALRPGPPPGSKGKKPKSFSTGLAGRGQVANRGSSGAFPANGPSEAATYNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDIKWEGDEPGISRKGGRPGPGRGTKKPLTRGGGVSGAGRGRGTMKPKKGFPFSQNGIGKKPLGDIEILHTETLIKEVCGQMKKLYRNCC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	371
297746393	446	unnamed protein product [Vitis vinifera]	0.962	0.800	0.748	1e-151
225435596	449	PREDICTED: uncharacterized protein LOC10	0.962	0.795	0.742	1e-150
224057174	399	predicted protein [Populus trichocarpa]	0.943	0.877	0.765	1e-149
255544742	402	conserved hypothetical protein [Ricinus	0.940	0.868	0.764	1e-141
30684221	397	Emsy N Terminus and plant Tudor-like dom	0.929	0.869	0.693	1e-132
7630058	414	putative protein [Arabidopsis thaliana]	0.929	0.833	0.693	1e-132
449502209	418	PREDICTED: uncharacterized protein LOC10	0.962	0.854	0.679	1e-129
449462597	418	PREDICTED: uncharacterized protein LOC10	0.962	0.854	0.676	1e-129
359487460	424	PREDICTED: uncharacterized protein LOC10	0.948	0.830	0.672	1e-128
297811421	398	emsy N terminus domain-containing protei	0.932	0.869	0.690	1e-128

>gi|297746393|emb|CBI16449.3| unnamed protein product [Vitis vinifera]

 Score =  541 bits (1395), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 271/362 (74%), Positives = 299/362 (82%), Gaps = 5/362 (1%)

Query: 1   MDYQLSDSSGTDDDLPPSHHNRFQRGVRPTGNGRSAVIGSASLPRMQNDMATQIHSVEQD 60
           MDY LSDSSGTDDDLPPSH NRF RG R +GNGRS V+GSA  PRM  DM  QIH +EQ+
Sbjct: 1   MDYGLSDSSGTDDDLPPSHQNRFSRGGRASGNGRSGVLGSAPFPRMHGDMEAQIHHIEQE 60

Query: 61  AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKA 120
           AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLS+VNADDII  IREWRK 
Sbjct: 61  AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSRVNADDIIRSIREWRKG 120

Query: 121 SGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPSPGMHPSVQPSSSALR 180
            GLQ GM +  QPVH+  PSPTVSASRKK KTSQS+ASLS GAPSP +HP++QPSSSAL+
Sbjct: 121 GGLQHGMAA--QPVHESIPSPTVSASRKKQKTSQSIASLSLGAPSPALHPTMQPSSSALK 178

Query: 181 PGPPPGSKGKKPKSF-STGLAGRGQVANRGSSGAFPANGPSEAATYNPLIGRKVWTRWPE 239
             P P SK KK K + S GL GR Q+ANRGSSGAF  N  +E  TY+PLIG+KVWTRWPE
Sbjct: 179 HAPTPRSKSKKTKPYPSAGLTGRPQLANRGSSGAFVGNEAAEGTTYDPLIGKKVWTRWPE 238

Query: 240 DNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDIKWEGDEPGISRKGGR 299
           DNHFYEAVITDYNP EGRHALVYDINT +ETWEWVNLKEISPEDI+WEGDE G+SR+G R
Sbjct: 239 DNHFYEAVITDYNPVEGRHALVYDINTTNETWEWVNLKEISPEDIRWEGDESGMSRRGSR 298

Query: 300 PGPGRGTKKPLTRGGGVSGAGRGRGTMK--PKKGFPFSQNGIGKKPLGDIEILHTETLIK 357
           PGPGRG KK + RGG V+GAGRGRGT K   KK FP SQNG+ KK    +EI +T++LIK
Sbjct: 299 PGPGRGMKKSMARGGAVTGAGRGRGTPKGQSKKVFPPSQNGLEKKDDSSLEIYNTDSLIK 358

Query: 358 EV 359
           EV
Sbjct: 359 EV 360

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435596|ref|XP_002285615.1| PREDICTED: uncharacterized protein LOC100257061 [Vitis vinifera]

 Score =  538 bits (1387), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 271/365 (74%), Positives = 298/365 (81%), Gaps = 8/365 (2%)

Query: 1   MDYQLSDSSGTDDDLPPSHHNRFQRGVRPTGNGRSAVIGSASLPRMQNDMATQIHSVEQD 60
           MDY LSDSSGTDDDLPPSH NRF RG R +GNGRS V+GSA  PRM  DM  QIH +EQ+
Sbjct: 1   MDYGLSDSSGTDDDLPPSHQNRFSRGGRASGNGRSGVLGSAPFPRMHGDMEAQIHHIEQE 60

Query: 61  AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKA 120
           AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLS+VNADDII  IREWRK 
Sbjct: 61  AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSRVNADDIIRSIREWRKG 120

Query: 121 SGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPSPGMHPSVQPSSSALR 180
            GLQ GM +  QPVH+  PSPTVSASRKK KTSQS+ASLS GAPSP +HP++QPSSSAL+
Sbjct: 121 GGLQHGMAA--QPVHESIPSPTVSASRKKQKTSQSIASLSLGAPSPALHPTMQPSSSALK 178

Query: 181 PGPPPGSKGKKPKSF----STGLAGRGQVANRGSSGAFPANGPSEAATYNPLIGRKVWTR 236
             P P SK KK K      S GL GR Q+ANRGSSGAF  N  +E  TY+PLIG+KVWTR
Sbjct: 179 HAPTPRSKSKKTKPSMQYPSAGLTGRPQLANRGSSGAFVGNEAAEGTTYDPLIGKKVWTR 238

Query: 237 WPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDIKWEGDEPGISRK 296
           WPEDNHFYEAVITDYNP EGRHALVYDINT +ETWEWVNLKEISPEDI+WEGDE G+SR+
Sbjct: 239 WPEDNHFYEAVITDYNPVEGRHALVYDINTTNETWEWVNLKEISPEDIRWEGDESGMSRR 298

Query: 297 GGRPGPGRGTKKPLTRGGGVSGAGRGRGTMK--PKKGFPFSQNGIGKKPLGDIEILHTET 354
           G RPGPGRG KK + RGG V+GAGRGRGT K   KK FP SQNG+ KK    +EI +T++
Sbjct: 299 GSRPGPGRGMKKSMARGGAVTGAGRGRGTPKGQSKKVFPPSQNGLEKKDDSSLEIYNTDS 358

Query: 355 LIKEV 359
           LIKEV
Sbjct: 359 LIKEV 363

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057174|ref|XP_002299156.1| predicted protein [Populus trichocarpa] gi|222846414|gb|EEE83961.1| predicted protein [Populus trichocarpa]

 Score =  533 bits (1374), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 277/362 (76%), Positives = 302/362 (83%), Gaps = 12/362 (3%)

Query: 1   MDYQLSDSSGTDDDLPPSHHNRFQRGVRPTGNGRSAVIGSASLPRMQNDMATQIHSVEQD 60
           MDY+LSDSSGTDDDLPP+H NRFQ G R  GNGRSAV G+AS PR+ +DM TQIH++EQ+
Sbjct: 1   MDYELSDSSGTDDDLPPTHRNRFQSGARTAGNGRSAVGGAASQPRLHSDMETQIHNIEQE 60

Query: 61  AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKA 120
           AY+SVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELL++VNADD+I RIREWRKA
Sbjct: 61  AYTSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLARVNADDMIRRIREWRKA 120

Query: 121 SGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPSPGMHPSVQPSSSALR 180
           +G+QP MPS  QP HDP PSPTVS SRKK KTSQSVASLS   PSP +HPS+QPS+SALR
Sbjct: 121 NGIQPSMPSTAQPSHDPIPSPTVSGSRKKQKTSQSVASLSMVVPSPVLHPSMQPSTSALR 180

Query: 181 PGPPPGSKGKKPKS-FSTGLAGRGQVANRGSSGAFPANGPSEAATYNPLIGRKVWTRWPE 239
            GPPPGS  KKPKS  STGL+ R Q ANRGSSG F  N          LIG+KVWTRWPE
Sbjct: 181 HGPPPGSGNKKPKSQRSTGLSSRAQAANRGSSGVFATND---------LIGKKVWTRWPE 231

Query: 240 DNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDIKWEGDEPGISRKGGR 299
           DNHFYEAVITDYNP EGRHALVYDINT DETWEWVNLKEISPEDI+WEG+EPG+ R+GGR
Sbjct: 232 DNHFYEAVITDYNPVEGRHALVYDINTGDETWEWVNLKEISPEDIRWEGEEPGLFRRGGR 291

Query: 300 PGPGRGTKKPLTRGGGVSGAGRGRGTMK--PKKGFPFSQNGIGKKPLGDIEILHTETLIK 357
           PGPGRG KK + RGG V  AGRGRGT K   KK FP  QNGIGKK +GDIEILHT TLIK
Sbjct: 292 PGPGRGNKKAIARGGAVVTAGRGRGTTKGQSKKDFPLIQNGIGKKAMGDIEILHTNTLIK 351

Query: 358 EV 359
           EV
Sbjct: 352 EV 353

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544742|ref|XP_002513432.1| conserved hypothetical protein [Ricinus communis] gi|223547340|gb|EEF48835.1| conserved hypothetical protein [Ricinus communis]

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 273/357 (76%), Positives = 304/357 (85%), Gaps = 8/357 (2%)

Query: 9   SGTDDDLPPSHHNRFQRGVRPTGNGRSAVIGSASLPRMQNDMATQIHSVEQDAYSSVLRA 68
           +GTDDDLPPSH NRFQ GVRP GNGRS  +GS S+PR+ +DM TQIH++EQ+AY+SVLRA
Sbjct: 2   AGTDDDLPPSHRNRFQSGVRPAGNGRSTAVGSTSIPRLHSDMETQIHNIEQEAYTSVLRA 61

Query: 69  FKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKASGLQPGMP 128
           FKAQSDAITWEKESLITELRKELRVSDEEHRELLS+VN+DDII RIREWRK +GLQPGMP
Sbjct: 62  FKAQSDAITWEKESLITELRKELRVSDEEHRELLSRVNSDDIIRRIREWRKTNGLQPGMP 121

Query: 129 SIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPSPGMHPSVQPSSSALRPGPPPGSK 188
           S  QP HDP+PSPTVSAS KK KTSQSVASLS GAPSP + PS+QPSSSA R GPPPG +
Sbjct: 122 STAQPAHDPSPSPTVSASHKKQKTSQSVASLSMGAPSPAL-PSMQPSSSAFRRGPPPGPR 180

Query: 189 GKKPKSF----STGLAGRGQVANRGSSGAFPANGPSEAATYNPLIGRKVWTRWPEDNHFY 244
            KKPKS     S GL GR Q ANR SSGAF AN P+EA +Y+ LIGRKVWTRWPEDNHFY
Sbjct: 181 SKKPKSSMQYPSAGLTGRAQAANRSSSGAFAANEPAEATSYD-LIGRKVWTRWPEDNHFY 239

Query: 245 EAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDIKWEGDEPGISRKGGRPGPGR 304
           EAVITDY P EGRHALVYDINTADETWEWVNLKEISPEDI+W+ ++ G+ R+GGRPGPGR
Sbjct: 240 EAVITDYKPAEGRHALVYDINTADETWEWVNLKEISPEDIRWKDEDQGVFRRGGRPGPGR 299

Query: 305 GTKKPLTRGGGVSGAGRGRGTMK--PKKGFPFSQNGIGKKPLGDIEILHTETLIKEV 359
           G KK +  GGG+ GAGRGRGTMK   +K FP +QNGIG+K L DIEILHT+TLIKEV
Sbjct: 300 GNKKSMAHGGGLGGAGRGRGTMKGQSRKEFPLAQNGIGRKALDDIEILHTDTLIKEV 356

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30684221|ref|NP_196806.2| Emsy N Terminus and plant Tudor-like domain-containing protein [Arabidopsis thaliana] gi|332004459|gb|AED91842.1| Emsy N Terminus and plant Tudor-like domain-containing protein [Arabidopsis thaliana]

 Score =  476 bits (1225), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 253/365 (69%), Positives = 293/365 (80%), Gaps = 20/365 (5%)

Query: 1   MDYQLSDSSGTDDDLPPSHHNRFQRGVRPTGNGRSAVIGSASLPRMQNDMATQIHSVEQD 60
           MDY+ SDSSGTDDDLPPSH  R+QR  RPTGNGR +V+ SA L R+ N+M TQIH +EQ+
Sbjct: 1   MDYRPSDSSGTDDDLPPSHQGRYQRNARPTGNGRPSVLNSAPLSRVHNEMETQIHLIEQE 60

Query: 61  AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKA 120
           AYSS+LRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLS+VNAD++I RIREWRKA
Sbjct: 61  AYSSILRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSRVNADEMIRRIREWRKA 120

Query: 121 SGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPSPGMHPSVQPSSSALR 180
           + LQ    S+PQ VHD APSP VS SRKK KTSQS+ASL+ G PSP +HPS+QPSSSALR
Sbjct: 121 NSLQ---SSVPQLVHD-APSPAVSGSRKKQKTSQSIASLAMGPPSPSLHPSMQPSSSALR 176

Query: 181 PGPPPGSKGKKPKSF-----STGLAGRGQVANRGSSGAFPANGPSEAATYNPLIGRKVWT 235
            G PP     K         STG+AGR Q      +GA   N P E+ +Y+PL+GRKVWT
Sbjct: 177 RGGPPPGPKTKKPKTSMQYPSTGIAGRPQ------AGAL-TNEPGESGSYDPLVGRKVWT 229

Query: 236 RWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDIKWEGDEPGISR 295
           +WP+DN +YEAVITDYNP EGRHALVYDIN+A+ETWEWVNLKEISP DI+WEG++PGISR
Sbjct: 230 KWPDDNQYYEAVITDYNPVEGRHALVYDINSANETWEWVNLKEISPGDIRWEGEDPGISR 289

Query: 296 KGGRPGPGRGTKKPLTRGGGVSGA-GRGRGTMKPKKGFPFSQNGIGKKPLGDIEILHTET 354
           KGG PG GRGTK  + RGG  S A GRGRG+M+ ++  P +QNGIGKK LG+IEILHTET
Sbjct: 290 KGGHPGQGRGTKT-MARGGPASNAGGRGRGSMRMQQ--PKTQNGIGKKALGEIEILHTET 346

Query: 355 LIKEV 359
           L+KEV
Sbjct: 347 LLKEV 351

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7630058|emb|CAB88266.1| putative protein [Arabidopsis thaliana]

 Score =  476 bits (1225), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 253/365 (69%), Positives = 293/365 (80%), Gaps = 20/365 (5%)

Query: 1   MDYQLSDSSGTDDDLPPSHHNRFQRGVRPTGNGRSAVIGSASLPRMQNDMATQIHSVEQD 60
           MDY+ SDSSGTDDDLPPSH  R+QR  RPTGNGR +V+ SA L R+ N+M TQIH +EQ+
Sbjct: 1   MDYRPSDSSGTDDDLPPSHQGRYQRNARPTGNGRPSVLNSAPLSRVHNEMETQIHLIEQE 60

Query: 61  AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKA 120
           AYSS+LRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLS+VNAD++I RIREWRKA
Sbjct: 61  AYSSILRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSRVNADEMIRRIREWRKA 120

Query: 121 SGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPSPGMHPSVQPSSSALR 180
           + LQ    S+PQ VHD APSP VS SRKK KTSQS+ASL+ G PSP +HPS+QPSSSALR
Sbjct: 121 NSLQ---SSVPQLVHD-APSPAVSGSRKKQKTSQSIASLAMGPPSPSLHPSMQPSSSALR 176

Query: 181 PGPPPGSKGKKPKSF-----STGLAGRGQVANRGSSGAFPANGPSEAATYNPLIGRKVWT 235
            G PP     K         STG+AGR Q      +GA   N P E+ +Y+PL+GRKVWT
Sbjct: 177 RGGPPPGPKTKKPKTSMQYPSTGIAGRPQ------AGAL-TNEPGESGSYDPLVGRKVWT 229

Query: 236 RWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDIKWEGDEPGISR 295
           +WP+DN +YEAVITDYNP EGRHALVYDIN+A+ETWEWVNLKEISP DI+WEG++PGISR
Sbjct: 230 KWPDDNQYYEAVITDYNPVEGRHALVYDINSANETWEWVNLKEISPGDIRWEGEDPGISR 289

Query: 296 KGGRPGPGRGTKKPLTRGGGVSGA-GRGRGTMKPKKGFPFSQNGIGKKPLGDIEILHTET 354
           KGG PG GRGTK  + RGG  S A GRGRG+M+ ++  P +QNGIGKK LG+IEILHTET
Sbjct: 290 KGGHPGQGRGTKT-MARGGPASNAGGRGRGSMRMQQ--PKTQNGIGKKALGEIEILHTET 346

Query: 355 LIKEV 359
           L+KEV
Sbjct: 347 LLKEV 351

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449502209|ref|XP_004161575.1| PREDICTED: uncharacterized protein LOC101228708 [Cucumis sativus]

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 246/362 (67%), Positives = 276/362 (76%), Gaps = 5/362 (1%)

Query: 1   MDYQLSDSSGTDDDLPPSHHNRFQRGVRPTGNGRSAVIGSASLPRMQNDMATQIHSVEQD 60
           M+Y+ SDSSGTDDDLPP H +RFQRG  P GNGRSA + S++LPRM  DM  QIH +EQ+
Sbjct: 1   MEYEPSDSSGTDDDLPPPHQSRFQRGGLPAGNGRSAPVNSSALPRMLGDMEMQIHHIEQE 60

Query: 61  AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKA 120
           AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHR+LLS+VNADD+I RIREWR A
Sbjct: 61  AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRKLLSRVNADDVIKRIREWRTA 120

Query: 121 SGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPSPGMHPSVQPSSSALR 180
           +GLQPG  +  QP+ DP PSPT SASRKK KTSQ  ASLS GAP+P M  ++ PSSS LR
Sbjct: 121 NGLQPGKLNSDQPMADPVPSPTASASRKKQKTSQ--ASLSQGAPTPAMPTTIPPSSSTLR 178

Query: 181 PGPPPGSKGKKPKS-FSTGLAGRGQVANRGSSGAFPANGPSEAATYNPLIGRKVWTRWPE 239
            GPPPG++  K KS   TG  G  QV NRGS GAF +N  +E   + PLIGRKVWTRWPE
Sbjct: 179 RGPPPGARTTKTKSAMHTGPTGSAQVNNRGSLGAFASNENAEGVNHEPLIGRKVWTRWPE 238

Query: 240 DNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDIKWEGDEPGISRKGGR 299
           DN FYEAVITDYN  EGRHALVYDINTA ETWEWVNLKEISPEDI+WE +     R G R
Sbjct: 239 DNSFYEAVITDYNHAEGRHALVYDINTAHETWEWVNLKEISPEDIRWEREVSAALRGGAR 298

Query: 300 PGPGRGTKKPLT--RGGGVSGAGRGRGTMKPKKGFPFSQNGIGKKPLGDIEILHTETLIK 357
           PG GRG KK +T        G GRG    + ++  P SQNG  K+P GDIEILHT+TLIK
Sbjct: 299 PGHGRGNKKSMTRGGAVAAGGRGRGTTKGQSRRDLPVSQNGSRKQPTGDIEILHTDTLIK 358

Query: 358 EV 359
           EV
Sbjct: 359 EV 360

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462597|ref|XP_004149027.1| PREDICTED: uncharacterized protein LOC101218087 [Cucumis sativus]

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 245/362 (67%), Positives = 276/362 (76%), Gaps = 5/362 (1%)

Query: 1   MDYQLSDSSGTDDDLPPSHHNRFQRGVRPTGNGRSAVIGSASLPRMQNDMATQIHSVEQD 60
           M+Y+ SDSSGTDDDLPP H +RFQRG  P GNGRSA + S++LPRM  DM  QIH +EQ+
Sbjct: 1   MEYEPSDSSGTDDDLPPPHQSRFQRGGLPAGNGRSAPVNSSALPRMLGDMEMQIHHIEQE 60

Query: 61  AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKA 120
           AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHR+LLS+VNADD+I RIREWR A
Sbjct: 61  AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRKLLSRVNADDVIKRIREWRTA 120

Query: 121 SGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPSPGMHPSVQPSSSALR 180
           +GLQPG  +  QP+ DP PSPT SASRKK KTSQ  ASLS GAP+P M  ++ PSSS LR
Sbjct: 121 NGLQPGKLNSDQPMADPVPSPTASASRKKQKTSQ--ASLSQGAPTPAMPTTIPPSSSTLR 178

Query: 181 PGPPPGSKGKKPKS-FSTGLAGRGQVANRGSSGAFPANGPSEAATYNPLIGRKVWTRWPE 239
            GPPPG++  K KS   TG  G  QV NRGS GAF +N  +E   + PLIGRKVWTRWPE
Sbjct: 179 RGPPPGARTTKTKSAMHTGPTGSAQVNNRGSLGAFASNENAEGVNHEPLIGRKVWTRWPE 238

Query: 240 DNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDIKWEGDEPGISRKGGR 299
           DN FYEAVITDYN  EGRHALVYDINTA ETWEWVNLKEISPEDI+WE +     R G R
Sbjct: 239 DNSFYEAVITDYNHAEGRHALVYDINTAHETWEWVNLKEISPEDIRWEREVSAALRGGAR 298

Query: 300 PGPGRGTKKPLT--RGGGVSGAGRGRGTMKPKKGFPFSQNGIGKKPLGDIEILHTETLIK 357
           PG GRG +K +T        G GRG    + ++  P SQNG  K+P GDIEILHT+TLIK
Sbjct: 299 PGHGRGNRKSMTRGGAVAAGGRGRGTTKGQSRRDLPVSQNGSRKQPTGDIEILHTDTLIK 358

Query: 358 EV 359
           EV
Sbjct: 359 EV 360

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487460|ref|XP_002273408.2| PREDICTED: uncharacterized protein LOC100263217 [Vitis vinifera]

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 250/372 (67%), Positives = 283/372 (76%), Gaps = 20/372 (5%)

Query: 1   MDYQLSDSSGTDDDLPPSHHNRFQRGVRPTGNGRSAVIGSASLPRM--QNDMATQIHSVE 58
           MDY+  DSSGTDDDLPP H NR  RG R  GNGRSAV+GS    RM  + DM TQIH +E
Sbjct: 1   MDYEPFDSSGTDDDLPPPHQNRIPRGGRVAGNGRSAVVGSIPYSRMYGETDMETQIHQLE 60

Query: 59  QDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWR 118
           Q+AYSSVLRAFKAQ+DAITWEKESLITELRKELR+S+EEHRELL +VNADD+I RIREWR
Sbjct: 61  QEAYSSVLRAFKAQADAITWEKESLITELRKELRLSNEEHRELLGRVNADDVIRRIREWR 120

Query: 119 KASGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPSPGMHP-----SVQ 173
           +A GLQPGM +  Q VHDP PSPTVSASRKK K +QS+ S S G PS   HP     S Q
Sbjct: 121 QAGGLQPGMLTTGQAVHDPIPSPTVSASRKKQKITQSIPSQSFGGPSQSFHPQAIAASNQ 180

Query: 174 PSSSALRPGPPPGSKGKKPKS----FSTGLAGRGQVANRGSSGAFPANGPSEAATYNPLI 229
           PSSSA + GP  G KGKK KS     S+G  GRGQVANRG       N P+EAAT++PLI
Sbjct: 181 PSSSAAKRGPILGPKGKKHKSSMQYASSGPTGRGQVANRG------VNEPAEAATFDPLI 234

Query: 230 GRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDIKWEGD 289
           GRKV TRWP+DN+FYEAVITDYNP EGRHALVYD+ +A+ETWEWVNL EISPEDI+W+G+
Sbjct: 235 GRKVRTRWPDDNNFYEAVITDYNPVEGRHALVYDMGSANETWEWVNLSEISPEDIQWDGE 294

Query: 290 EPGISRKGGRPGPGRGTKKPLTRGGGVSGAGRGRGTMK--PKKGFPFSQNGIGKKPLGDI 347
           +PGISR+GG  G G G  + + R   V GAGRGRG  K   KK F  SQNGIGKK   DI
Sbjct: 295 DPGISRRGGYDGSGHGMNRAVGR-DSVQGAGRGRGLPKGQSKKDFLPSQNGIGKKAPDDI 353

Query: 348 EILHTETLIKEV 359
           +ILHT+TLIKEV
Sbjct: 354 QILHTDTLIKEV 365

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297811421|ref|XP_002873594.1| emsy N terminus domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297319431|gb|EFH49853.1| emsy N terminus domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 252/365 (69%), Positives = 289/365 (79%), Gaps = 19/365 (5%)

Query: 1   MDYQLSDSSGTDDDLPPSHHNRFQRGVRPTGNGRSAVIGSASLPRMQNDMATQIHSVEQD 60
           MDY+ SDSSGTDDDLPPSH  R+QR  RP GNGR +V+ SA L R+ NDM TQIH +EQ+
Sbjct: 1   MDYRPSDSSGTDDDLPPSHQGRYQRSARPAGNGRPSVLNSAPLSRVHNDMETQIHLIEQE 60

Query: 61  AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKA 120
           AYSS+LRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLS+VNAD++I RIREWRK 
Sbjct: 61  AYSSILRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSRVNADEMIRRIREWRKT 120

Query: 121 SGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPSPGMHPSVQPSSSALR 180
           + LQ    S+PQ VHD APSP VS SRKK KTSQS+ASL+ G PSP +HPS+QPSSSALR
Sbjct: 121 NSLQ---SSVPQLVHD-APSPAVSGSRKKQKTSQSIASLAMGPPSPSLHPSMQPSSSALR 176

Query: 181 PGPPPGSKGKKPKSFS-----TGLAGRGQVANRGSSGAFPANGPSEAATYNPLIGRKVWT 235
            G PP     K    S     TG+ GR Q      +GA   N P E+ +Y+PL+GRKVWT
Sbjct: 177 RGGPPPGPKTKKPKTSMQYPPTGMPGRPQ------AGAL-TNEPGESGSYDPLVGRKVWT 229

Query: 236 RWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDIKWEGDEPGISR 295
           +WP+DNHFYEAVITDYNP E RHALVYDIN+A+ETWEWVNLKEISP DI+WEG++PG+SR
Sbjct: 230 KWPDDNHFYEAVITDYNPVEVRHALVYDINSANETWEWVNLKEISPGDIRWEGEDPGVSR 289

Query: 296 KGGRPGPGRGTKKPLTRGGGVSGA-GRGRGTMKPKKGFPFSQNGIGKKPLGDIEILHTET 354
           KGG PG GRGT K + RGG  S A GRGRG MK ++  P +QNGIGKK LG+IEILHT+T
Sbjct: 290 KGGHPGQGRGTSKSMARGGPTSNAGGRGRGGMKMQQ--PKTQNGIGKKALGEIEILHTDT 347

Query: 355 LIKEV 359
           LIKEV
Sbjct: 348 LIKEV 352

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	371
TAIR|locus:2182345	397	EML3 "AT5G13020" [Arabidopsis	0.946	0.884	0.626	1.2e-113
TAIR|locus:2050594	429	EML4 "AT2G44440" [Arabidopsis	0.469	0.405	0.557	6.6e-79
TAIR|locus:2099287	383	EML1 "AT3G12140" [Arabidopsis	0.301	0.292	0.657	3.6e-69
TAIR|locus:2170179	320	EML2 "AT5G06780" [Arabidopsis	0.199	0.231	0.683	8.6e-61
TAIR|locus:2095868	319	AT3G57970 "AT3G57970" [Arabido	0.167	0.194	0.353	1.9e-11
TAIR|locus:2095858	223	AT3G57960 "AT3G57960" [Arabido	0.231	0.385	0.287	4.7e-06
TAIR|locus:2147730	326	AT5G20030 [Arabidopsis thalian	0.177	0.202	0.388	3.1e-05

TAIR|locus:2182345 EML3 "AT5G13020" [Arabidopsis thaliana (taxid:3702)]

 Score = 1121 (399.7 bits), Expect = 1.2e-113, P = 1.2e-113
 Identities = 225/359 (62%), Positives = 264/359 (73%)

Query:     1 MDYQLSDSSGTDDDLPPSHHNRFQRGVRPTGNGRSAVIGSASLPRMQNDMATQIHSVEQD 60
             MDY+ SDSSGTDDDLPPSH  R+QR  RPTGNGR +V+ SA L R+ N+M TQIH +EQ+
Sbjct:     1 MDYRPSDSSGTDDDLPPSHQGRYQRNARPTGNGRPSVLNSAPLSRVHNEMETQIHLIEQE 60

Query:    61 AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKA 120
             AYSS+LRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLS+VNAD++I RIREWRKA
Sbjct:    61 AYSSILRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSRVNADEMIRRIREWRKA 120

Query:   121 SGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPSPGMHPSVQPSSSALR 180
             + LQ    S+PQ VHD APSP VS SRKK KTSQS+ASL+ G PSP +HPS+QPSSSALR
Sbjct:   121 NSLQS---SVPQLVHD-APSPAVSGSRKKQKTSQSIASLAMGPPSPSLHPSMQPSSSALR 176

Query:   181 XXXXXXXXXXXXXXFSTGLAGRGQVANRGSSGAFPANGPSEAATYNPLIGRKVWTRWPED 240
                            S      G +A R  +GA   N P E+ +Y+PL+GRKVWT+WP+D
Sbjct:   177 RGGPPPGPKTKKPKTSMQYPSTG-IAGRPQAGAL-TNEPGESGSYDPLVGRKVWTKWPDD 234

Query:   241 NHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDIKWEGDEPGISXXXXXX 300
             N +YEAVITDYNP EGRHALVYDIN+A+ETWEWVNLKEISP DI+WEG++PGIS      
Sbjct:   235 NQYYEAVITDYNPVEGRHALVYDINSANETWEWVNLKEISPGDIRWEGEDPGISRKGGHP 294

Query:   301 XXXXXXXXXLTXXXXXXXXXXXXXTMKPKKGFPFSQNGIGKKPLGDIEILHTETLIKEV 359
                                     +M+ ++  P +QNGIGKK LG+IEILHTETL+KEV
Sbjct:   295 GQGRGTKTMARGGPASNAGGRGRGSMRMQQ--PKTQNGIGKKALGEIEILHTETLLKEV 351

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008284 "positive regulation of cell proliferation" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2050594 EML4 "AT2G44440" [Arabidopsis thaliana (taxid:3702)]

 Score = 483 (175.1 bits), Expect = 6.6e-79, Sum P(2) = 6.6e-79
 Identities = 102/183 (55%), Positives = 125/183 (68%)

Query:     1 MDYQLSDSSGTDDDLPPSHH----NRFQRGVRPTGNGRSAVIGSASLPRMQNDMAT---- 52
             MD + SDSSGTDDDLPPSH         RG R  GNGR   +   S P+M +D+A     
Sbjct:     1 MDCKSSDSSGTDDDLPPSHRVPRGGGGGRGGRVAGNGRPLNL-PPSYPKMYDDLAADMEA 59

Query:    53 QIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIIL 112
             QIH +E++AY SVLRAFKAQ DAI+WEKES+ITELRKEL +S+EEHRELL +VN+DD I 
Sbjct:    60 QIHQIEKEAYISVLRAFKAQGDAISWEKESVITELRKELSLSNEEHRELLGRVNSDDTIR 119

Query:   113 RIREWRKASGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPSPGMHPSV 172
             RIREWR++ G+QP M +  Q VHD  PSP+VSAS K  K +Q + S    + SP  HP  
Sbjct:   120 RIREWRQSGGMQPSMRNAAQVVHDTLPSPSVSASMKTHKPNQPIPSQPFASSSPSFHPQA 179

Query:   173 QPS 175
              P+
Sbjct:   180 DPT 182

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2099287 EML1 "AT3G12140" [Arabidopsis thaliana (taxid:3702)]

 Score = 346 (126.9 bits), Expect = 3.6e-69, Sum P(3) = 3.6e-69
 Identities = 75/114 (65%), Positives = 87/114 (76%)

Query:    50 MATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADD 109
             M TQIH +EQ+AY++VLRAFKAQSDAI+WEKESLITELRKELRVSD+EHRELLS+VN DD
Sbjct:     1 METQIHQLEQEAYTAVLRAFKAQSDAISWEKESLITELRKELRVSDDEHRELLSRVNKDD 60

Query:   110 IILRIREWRKASGLQPGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGA 163
              I RIR+WR+    Q    +  QP  D  PSPT SA+RKK KT  S  + S GA
Sbjct:    61 TIQRIRDWRQGGASQITRHATIQPF-DVLPSPTFSAARKKQKTFPSY-NPSIGA 112

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

TAIR|locus:2170179 EML2 "AT5G06780" [Arabidopsis thaliana (taxid:3702)]

 Score = 306 (112.8 bits), Expect = 8.6e-61, Sum P(3) = 8.6e-61
 Identities = 54/79 (68%), Positives = 65/79 (82%)

Query:   216 ANGPSEAATYNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVN 275
             AN P+EA     LIGRKVWT+WPEDN FYEAV+T YN NEGRHALVYDINT +ETWEWV+
Sbjct:   128 ANEPAEA-----LIGRKVWTKWPEDNSFYEAVVTQYNANEGRHALVYDINTVNETWEWVD 182

Query:   276 LKEISPEDIKWEGDEPGIS 294
             L EI  +DI+W+G+E G++
Sbjct:   183 LNEIPTKDIRWDGEEDGVT 201

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2095868 AT3G57970 "AT3G57970" [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
 Identities = 23/65 (35%), Positives = 39/65 (60%)

Query:   228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD--ETWEWVNLKEISPEDIK 285
             L+GR+V  + P+++ + E +IT Y+ N   H L+   +  D  +   WV+L+ +  ED+K
Sbjct:   201 LVGRRVHIQMPDEDEYIEFLITKYDANTETHHLLSAFSNKDYEDPCNWVDLRHVQAEDMK 260

Query:   286 W-EGD 289
             W EGD
Sbjct:   261 WPEGD 265

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2095858 AT3G57960 "AT3G57960" [Arabidopsis thaliana (taxid:3702)]

 Score = 108 (43.1 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
 Identities = 27/94 (28%), Positives = 48/94 (51%)

Query:   205 VANRGSSGAFPANGPSEA-ATYNP--LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALV 261
             + N  +   F    P ++  + NP  LIG+ V  R P+   F E +I  Y+  +  H+L+
Sbjct:   114 LTNTATPSTFFVPKPVKSWGSVNPESLIGKWVSIRLPDKAKFTEYIIKAYDAEKEMHSLL 173

Query:   262 YDINTADET-----WEWVNLKEISPEDIKWEGDE 290
              + +   E      + W+++++ISP DI WEG +
Sbjct:   174 TETSNPMEVDCIDPFRWIDIRDISPNDIMWEGGQ 207

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2147730 AT5G20030 [Arabidopsis thaliana (taxid:3702)]

 Score = 125 (49.1 bits), Expect = 3.1e-05, P = 3.1e-05
 Identities = 26/67 (38%), Positives = 40/67 (59%)

Query:    43 LPRMQNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELL 102
             +PR  ++ A  +H +E DAY S +    A    ITWE+E+ IT LR +L +S+EEH   +
Sbjct:   255 VPRKGSE-AADVHRLELDAYRSSIERLHASGPIITWEQETWITNLRLKLNISNEEHLMQI 313

Query:   103 SKVNADD 109
               + +DD
Sbjct:   314 RNLISDD 320


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.312   0.130   0.389    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      371       329   0.00089  116 3  11 23  0.47    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  617 (66 KB)
  Total size of DFA:  246 KB (2131 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  35.83u 0.11s 35.94t   Elapsed:  00:00:01
  Total cpu time:  35.83u 0.11s 35.94t   Elapsed:  00:00:02
  Start:  Sat May 11 12:04:44 2013   End:  Sat May 11 12:04:46 2013

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_I000129 hypothetical protein (399 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	371
pfam03735	74	pfam03735, ENT, ENT domain	8e-37
smart00743	59	smart00743, Agenet, Tudor-like domain present in p	2e-05

>gnl|CDD|146396 pfam03735, ENT, ENT domain

 Score =  127 bits (322), Expect = 8e-37
 Identities = 45/73 (61%), Positives = 59/73 (80%)

Query: 50  MATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADD 109
           M  Q+H +E +AY++VLRAF+AQ DA++WEKE L+TELRKELR+SDEEHRELL +VN+D+
Sbjct: 1   MERQLHRLELEAYAAVLRAFRAQGDALSWEKEELLTELRKELRISDEEHRELLRRVNSDE 60

Query: 110 IILRIREWRKASG 122
            +L IRE R    
Sbjct: 61  RLLTIRENRSGGN 73

This presumed domain is named after Emsy N Terminus (ENT). Emsy is a protein that is amplified in breast cancer and interacts with BRCA2. The N terminus of this protein is found to be similar to other vertebrate and plant proteins of unknown function. This domain has a completely conserved histidine residue that may be functionally important. Length = 74

>gnl|CDD|214798 smart00743, Agenet, Tudor-like domain present in plant sequences

 Score = 41.5 bits (98), Expect = 2e-05
 Identities = 12/59 (20%), Positives = 26/59 (44%), Gaps = 5/59 (8%)

Query: 228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD--ETWEWVNLKEISPEDI 284
             G +V      ++ ++EAV+T     +G++ + Y   +     T +W +L+   P   
Sbjct: 4   KEGDRVEVFS--EDSWWEAVVTKVL-GDGKYLVEYKGESEPLELTVDWSDLRPHPPWVD 59

Domain in plant sequences with possible chromatin-associated functions. Length = 59

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	371
KOG4675	273	consensus Uncharacterized conserved protein, conta	100.0
PF03735	73	ENT: ENT domain; InterPro: IPR005491 This entry re	99.94
PF09465	55	LBR_tudor: Lamin-B receptor of TUDOR domain; Inter	98.98
smart00743	61	Agenet Tudor-like domain present in plant sequence	98.1
smart00333	57	TUDOR Tudor domain. Domain of unknown function pre	96.9
cd04508	48	TUDOR Tudor domains are found in many eukaryotic o	96.64
PF09038	122	53-BP1_Tudor: Tumour suppressor p53-binding protei	96.6
PF06003	264	SMN: Survival motor neuron protein (SMN); InterPro	94.01
PLN00104	450	MYST -like histone acetyltransferase; Provisional	91.25
PF11717	55	Tudor-knot: RNA binding activity-knot of a chromod	88.81
KOG3026	262	consensus Splicing factor SPF30 [RNA processing an	87.81

>KOG4675 consensus Uncharacterized conserved protein, contains ENT domain [General function prediction only]

Probab=100.00  E-value=9e-54  Score=407.21  Aligned_cols=263  Identities=43%  Similarity=0.719  Sum_probs=216.8

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHhCCChHHHHHHHHHhchhHHHHHHH-HHhhhcCCC
Q 017436           46 MQNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIR-EWRKASGLQ  124 (371)
Q Consensus        46 ~~~~~~~~Ih~LE~eAY~sVLrAF~AQS~~LSWeKE~LLTeLR~eL~IS~eEH~~~l~~v~~De~i~~iR-e~r~~gg~q  124 (371)
                      .++||+.+||+||++||++||+||+||+++||||||++|||||++|+||+|||+++++++.+|+.|.+|| +|+..+..|
T Consensus         4 s~~~~~~~~~~le~eaY~~vl~af~aq~d~iS~ek~~~~teLrk~l~Is~eeh~~~~r~~~~d~~~~~i~~n~~~~n~~q   83 (273)
T KOG4675|consen    4 SRDEMEAQLHRLELEAYASVLRAFKAQGDAISWEKEELLTELRKELNISDEEHRMLVRRAINDDLITRIRENSRGSNKSQ   83 (273)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhcCcccchhHHHHHHHHhhhhccCHHHHHHHHHHHhccHHHHHHHHhhcCCCchh
Confidence            5689999999999999999999999999999999999999999999999999999999999999999999 466555433


Q ss_pred             CCCCCCCCCCCCCCCCCcchhhhhhcccccccccCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc----CCCC
Q 017436          125 PGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPSPGMHPSVQPSSSALRPGPPPGSKGKKPKSFS----TGLA  200 (371)
Q Consensus       125 ~g~~~~~q~~hd~~psPt~~asrKkqK~s~s~~s~~~g~psp~~~p~~qpsssa~k~g~~~~~k~kk~k~~s----~~~~  200 (371)
                      --.+ .....-+..|+|+.+.++|+||+.++++++.+.+.+|++++.+++.            +.+.+++++    ..++
T Consensus        84 e~~~-e~~~~~~i~p~~~~sta~kiqkn~~~~~a~~~~~~~ps~~~t~~~~------------~~~~a~pss~s~~~p~~  150 (273)
T KOG4675|consen   84 EWSG-EGRREWPIAPRPHPSTARKIQKNLLANKAIQHNAVLPSPIPTGPLT------------FNNTATPSSFSVPSPVS  150 (273)
T ss_pred             hhhh-hhhhccccCCCcCchhHHHhhccccchhhhhcccCCCCccccCCcc------------cCcccccccccCCCCCC
Confidence            2111 1123466779999999999999999999999999999998877664            222222221    1111


Q ss_pred             CCcccccCCCCCCCCCCCCCCcCcCCccccceeeeccCCCCCceeeeeeeccC-CCCceeeeccCCCCCCcceeeeccCC
Q 017436          201 GRGQVANRGSSGAFPANGPSEAATYNPLIGRKVWTRWPEDNHFYEAVITDYNP-NEGRHALVYDINTADETWEWVNLKEI  279 (371)
Q Consensus       201 g~~~~~~r~~~~~~~~~~~~~~~~~~sLVGrrVkv~WPdDn~fYegvIt~Yn~-~tg~H~LvYD~g~~~EtwEwVdL~e~  279 (371)
                      .|             ..+++     ++|||++|...||+++.|||++|++|+. .+++|+|+||.++.+++|+||||+++
T Consensus       151 ~~-------------~n~pp-----~slvgr~v~~k~pdk~~~te~iit~~~~~~E~~~~l~~~~~~~~~p~~wvdl~~I  212 (273)
T KOG4675|consen  151 SW-------------GNVPP-----ESLVGRKVWIKWPDKRKFTEAIITQYDAEKEGHHLLVPDINDCNDPWEWVDLREI  212 (273)
T ss_pred             cc-------------ccCCc-----hhhccccccccCcccccccccccccchhhhhhhhhcccccccccCCccccccccC
Confidence            12             12233     6699999999999999999999999555 45788999999999999999999999


Q ss_pred             CCccccccCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 017436          280 SPEDIKWEGDEPGISRKGGRPGPGRGTKKPLTRGGGVSGAGRGRGTMKPKKGFPFSQNGIGKK  342 (371)
Q Consensus       280 spedi~W~~e~p~i~~r~~~~~~g~g~~r~~~~~g~~~g~grgrg~~k~~k~~~~~qng~g~~  342 (371)
                      +||||+|+++++++..+.++.++|.|.++...+++ .++ +||+|..+ |+.+++.|||.+++
T Consensus       213 ~p~DIrw~g~~~~~~~~~~~~~~g~g~~~~t~~~~-~~~-~~~~~~~~-~~~~~~~~ngg~~~  272 (273)
T KOG4675|consen  213 SPEDIRWEGGDPGNPVAPNHSKPGTGTFNTTRRTQ-SPG-ARGRGPRT-RTGIPKTQNGGGRK  272 (273)
T ss_pred             CHHhccccCCCCCcccccCCCCCCcccccccCCcc-Ccc-ccCCCCcc-ccccccccCccccC
Confidence            99999999999999999999999999999888877 333 36665555 78999999995544

>PF03735 ENT: ENT domain; InterPro: IPR005491 This entry represents a protein regulator which is able to repress transcription, possibly via its interaction with a multi protein chromatin re-modeling complex that modifies the chromatin

Probab=99.94  E-value=1.7e-27  Score=189.58  Aligned_cols=72  Identities=57%  Similarity=0.932  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHhCCChHHHHHHHHHhchhHHHHHHHHHhhhcC
Q 017436           50 MATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKASG  122 (371)
Q Consensus        50 ~~~~Ih~LE~eAY~sVLrAF~AQS~~LSWeKE~LLTeLR~eL~IS~eEH~~~l~~v~~De~i~~iRe~r~~gg  122 (371)
                      |+++||+||++||++||+||+||++ |||+||+|||+||++|+||||||++++++|++|+.|++||+|+++++
T Consensus         1 ~~~~l~~LE~eAY~svl~Af~Aqg~-lsweke~lLt~Lr~~L~IS~e~H~~~l~~~~~De~l~~ir~~~~~~~   72 (73)
T PF03735_consen    1 MERQLHRLELEAYSSVLRAFRAQGP-LSWEKEKLLTELRKELNISDEEHREELRRAVSDEQLKTIREWRQGGN   72 (73)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHTT--HHHHHHHHHHHHH-HHHHHHHHHHH-SS
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHhccHHHHHHHHHhhcCC
Confidence            6899999999999999999999965 99999999999999999999999999999999999999999998875

Its interaction with BRCA2 suggests that it may play a central role in the DNA repair function of BRCA2 []. ; PDB: 1UZ3_B 1UTU_B 2FMM_E.

>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane

Probab=98.98  E-value=2.7e-10  Score=87.07  Aligned_cols=41  Identities=29%  Similarity=0.627  Sum_probs=34.8

Q ss_pred             cccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCCC
Q 017436          228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD  268 (371)
Q Consensus       228 LVGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~~  268 (371)
                      -+|.+|++|||+++-||+|.|++||..+.+|.|.|+||++-
T Consensus         7 ~~Ge~V~~rWP~s~lYYe~kV~~~d~~~~~y~V~Y~DGtel   47 (55)
T PF09465_consen    7 AIGEVVMVRWPGSSLYYEGKVLSYDSKSDRYTVLYEDGTEL   47 (55)
T ss_dssp             -SS-EEEEE-TTTS-EEEEEEEEEETTTTEEEEEETTS-EE
T ss_pred             cCCCEEEEECCCCCcEEEEEEEEecccCceEEEEEcCCCEE
Confidence            37999999999999999999999999999999999999984

It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.

>smart00743 Agenet Tudor-like domain present in plant sequences

Probab=98.10  E-value=3e-06  Score=63.57  Aligned_cols=54  Identities=26%  Similarity=0.395  Sum_probs=47.4

Q ss_pred             cccceeeeccCCCCCceeeeeeeccCCCCceeeeccC--CCCCCcceeeeccCCCCc
Q 017436          228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDI--NTADETWEWVNLKEISPE  282 (371)
Q Consensus       228 LVGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~--g~~~EtwEwVdL~e~spe  282 (371)
                      .+|..|.++|++++.||+|+|+.++. +++|.|.|++  ....|++++.+|+-+.+.
T Consensus         4 ~~G~~Ve~~~~~~~~W~~a~V~~~~~-~~~~~V~~~~~~~~~~e~v~~~~LRp~~~w   59 (61)
T smart00743        4 KKGDRVEVFSKEEDSWWEAVVTKVLG-DGKYLVRYLTESEPLKETVDWSDLRPHPPW   59 (61)
T ss_pred             CCCCEEEEEECCCCEEEEEEEEEECC-CCEEEEEECCCCcccEEEEeHHHcccCCCC
Confidence            47999999999999999999999998 6789999999  666888888888877654

Domain in plant sequences with possible chromatin-associated functions.

>smart00333 TUDOR Tudor domain

Probab=96.90  E-value=0.001  Score=48.58  Aligned_cols=39  Identities=26%  Similarity=0.454  Sum_probs=34.5

Q ss_pred             cccceeeeccCCCCCceeeeeeeccCCCCceeeeccC-CCCC
Q 017436          228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDI-NTAD  268 (371)
Q Consensus       228 LVGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~-g~~~  268 (371)
                      -+|..|.+.| +|+.||.|+|++++++ +...|.|.| |+.+
T Consensus         4 ~~G~~~~a~~-~d~~wyra~I~~~~~~-~~~~V~f~D~G~~~   43 (57)
T smart00333        4 KVGDKVAARW-EDGEWYRARIIKVDGE-QLYEVFFIDYGNEE   43 (57)
T ss_pred             CCCCEEEEEe-CCCCEEEEEEEEECCC-CEEEEEEECCCccE
Confidence            5788999999 9999999999999998 888899999 5553

Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).

>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains

Probab=96.64  E-value=0.0024  Score=45.20  Aligned_cols=38  Identities=18%  Similarity=0.443  Sum_probs=31.7

Q ss_pred             cceeeeccCCCCCceeeeeeeccCCCCceeeeccC-CCCC
Q 017436          230 GRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDI-NTAD  268 (371)
Q Consensus       230 GrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~-g~~~  268 (371)
                      |..+.++|++|+.||.|+|..+++ ++.-.|.|.| |+.+
T Consensus         1 G~~c~a~~~~d~~wyra~V~~~~~-~~~~~V~f~DyG~~~   39 (48)
T cd04508           1 GDLCLAKYSDDGKWYRAKITSILS-DGKVEVFFVDYGNTE   39 (48)
T ss_pred             CCEEEEEECCCCeEEEEEEEEECC-CCcEEEEEEcCCCcE
Confidence            557889999999999999999998 6667788887 5543

For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.

>PF09038 53-BP1_Tudor: Tumour suppressor p53-binding protein-1 Tudor; InterPro: IPR015125 This domain consist of ten beta-strands and a carboxy-terminal alpha-helix

Probab=96.60  E-value=0.0017  Score=57.15  Aligned_cols=41  Identities=20%  Similarity=0.589  Sum_probs=33.8

Q ss_pred             CccccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCC
Q 017436          226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTA  267 (371)
Q Consensus       226 ~sLVGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~  267 (371)
                      .+|||.||-.+|-+++-||.|+|+. +....+..|.||||..
T Consensus         2 ~~~iG~rV~AkWS~n~yyY~G~I~~-~~~~~kykv~FdDG~~   42 (122)
T PF09038_consen    2 SSFIGLRVFAKWSDNGYYYPGKITS-DKGKNKYKVLFDDGYE   42 (122)
T ss_dssp             --STT-EEEEESSTTSEEEEEEEEE-EETTTEEEEEETTS-E
T ss_pred             CcccccEEEEEEccCCcccCceEee-cCCCCeEEEEecCCcc
Confidence            4799999999999888889999999 4677899999999986

The amino-terminal five beta-strands and the C-terminal five beta-strands adopt folds that are identical to each other. The domain is essential for the recruitment of proteins to double stranded breaks in DNA, which is mediated by interaction with methylated Lys 79 of histone H3 []. ; PDB: 3LGL_A 1XNI_B 3LGF_A 2G3R_A 2IG0_A 3LH0_A 1SSF_A.

>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins

Probab=94.01  E-value=0.061  Score=52.23  Aligned_cols=48  Identities=27%  Similarity=0.524  Sum_probs=37.6

Q ss_pred             ccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCCCCcceeeeccCC
Q 017436          229 IGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEI  279 (371)
Q Consensus       229 VGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~~EtwEwVdL~e~  279 (371)
                      ||-+++..|=+|..||+|+|+..+.+.+.-.|+|+.-.-.   |.|.|.+|
T Consensus        71 vGd~C~A~~s~Dg~~Y~A~I~~i~~~~~~~~V~f~gYgn~---e~v~l~dL  118 (264)
T PF06003_consen   71 VGDKCMAVYSEDGQYYPATIESIDEEDGTCVVVFTGYGNE---EEVNLSDL  118 (264)
T ss_dssp             TT-EEEEE-TTTSSEEEEEEEEEETTTTEEEEEETTTTEE---EEEEGGGE
T ss_pred             CCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEcccCCe---Eeeehhhh
Confidence            9999999999999999999999999888778899775443   34545554

The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs.; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus, 0005737 cytoplasm; PDB: 1MHN_A 4A4G_A 3S6N_M 4A4E_A 1G5V_A 4A4H_A 4A4F_A 2D9T_A.

>PLN00104 MYST -like histone acetyltransferase; Provisional

Probab=91.25  E-value=1.3  Score=46.65  Aligned_cols=59  Identities=17%  Similarity=0.320  Sum_probs=45.0

Q ss_pred             cccceeeeccCCCCCceeeeeeeccCCC------CceeeeccCCCCCCcceeeeccCCCCcccccc
Q 017436          228 LIGRKVWTRWPEDNHFYEAVITDYNPNE------GRHALVYDINTADETWEWVNLKEISPEDIKWE  287 (371)
Q Consensus       228 LVGrrVkv~WPdDn~fYegvIt~Yn~~t------g~H~LvYD~g~~~EtwEwVdL~e~spedi~W~  287 (371)
                      -||-+|.++|..|..||+|.|.+.....      .++-|.|..-+..-- |||+...|....++..
T Consensus        55 ~VGekVla~~~~Dg~~~~A~VI~~R~~~~~~~~~~~YYVHY~g~nrRlD-EWV~~~rLdls~~e~~  119 (450)
T PLN00104         55 EVGTRVMCRWRFDGKYHPVKVIERRRGGSGGPNDYEYYVHYTEFNRRLD-EWVKLEQLDLDTVETV  119 (450)
T ss_pred             ccCCEEEEEECCCCCEEEEEEEEEeccCCCCCCCceEEEEEecCCccHh-hccCHhhccccccccc
Confidence            4999999999999999999999887633      356688987766311 6998888865555544

>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F

Probab=88.81  E-value=0.71  Score=34.62  Aligned_cols=49  Identities=31%  Similarity=0.516  Sum_probs=38.2

Q ss_pred             ccceeeeccCCCCCceeeeeeeccCCCC--ceeeeccCCCCCCcceeeeccCC
Q 017436          229 IGRKVWTRWPEDNHFYEAVITDYNPNEG--RHALVYDINTADETWEWVNLKEI  279 (371)
Q Consensus       229 VGrrVkv~WPdDn~fYegvIt~Yn~~tg--~H~LvYD~g~~~EtwEwVdL~e~  279 (371)
                      ||-+|.+.| .++.||+|.|.+-+...+  ..-|.|..-+..-- |||+.+.|
T Consensus         3 vG~~v~~~~-~~~~~y~A~I~~~r~~~~~~~YyVHY~g~nkR~D-eWV~~~~i   53 (55)
T PF11717_consen    3 VGEKVLCKY-KDGQWYEAKILDIREKNGEPEYYVHYQGWNKRLD-EWVPESRI   53 (55)
T ss_dssp             TTEEEEEEE-TTTEEEEEEEEEEEECTTCEEEEEEETTSTGCC--EEEETTTE
T ss_pred             cCCEEEEEE-CCCcEEEEEEEEEEecCCCEEEEEEcCCCCCCce-eeecHHHc
Confidence            788999999 999999999998877654  56689987777322 68876554

...

>KOG3026 consensus Splicing factor SPF30 [RNA processing and modification]

Probab=87.81  E-value=0.41  Score=46.86  Aligned_cols=36  Identities=28%  Similarity=0.556  Sum_probs=32.2

Q ss_pred             cccceeeeccCCCCCceeeeeeeccCCCCceeeecc
Q 017436          228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYD  263 (371)
Q Consensus       228 LVGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD  263 (371)
                      -||.||++-|+||..||++.|....+.++.-+|.++
T Consensus        92 ~vg~K~~A~~~ddg~~y~AtIe~ita~~~~~ai~f~  127 (262)
T KOG3026|consen   92 KVGDKVQAVFSDDGQIYDATIEHITAMEGTVAIIFA  127 (262)
T ss_pred             ccCCEEEEeecCCCceEEeehhhccCCCCceeEEEe
Confidence            489999999999999999999999998887777554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	371
2fmm_E	133	Protein EMSY; ENT domain, chromo shadow domain, EM	4e-37
1uz3_A	102	EMSY protein; chromatin regulator, chromatin regul	9e-28
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08

>2fmm_E Protein EMSY; ENT domain, chromo shadow domain, EMSY protein, heterochroma protein 1, transcription; 1.80A {Homo sapiens} SCOP: a.283.1.1 Length = 133

 Score =  129 bits (326), Expect = 4e-37
 Identities = 29/133 (21%), Positives = 51/133 (38%), Gaps = 11/133 (8%)

Query: 41  ASLPRMQNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRE 100
             L   +++    +  +E +AY+ V+ A +AQ D +T EK+ L+ EL K L +S E HR 
Sbjct: 1   GPLDLSRDECKRILRKLELEAYAGVISALRAQGD-LTKEKKDLLGELSKVLSISTERHRA 59

Query: 101 LLSKVNADDIILRIR----------EWRKASGLQPGMPSIPQPVHDPAPSPTVSASRKKT 150
            + +   D+ +  I           EW         +     P      +    A+    
Sbjct: 60  EVRRAVNDERLTTIAHNMSGPNSSSEWSIEGRRLVPLMPRLVPQTAFTVTANAVANAAIQ 119

Query: 151 KTSQSVASLSTGA 163
             +       TG+
Sbjct: 120 HNASLPVPAETGS 132

>1uz3_A EMSY protein; chromatin regulator, chromatin regulators, royal family domain; 1.1A {Homo sapiens} SCOP: a.283.1.1 PDB: 1utu_A Length = 102

 Score =  103 bits (259), Expect = 9e-28
 Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 1/75 (1%)

Query: 47  QNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVN 106
           +++    +  +E +AY+ V+ A +AQ D +T EK+ L+ EL K L +S E HR  + +  
Sbjct: 15  RDECKRILRKLELEAYAGVISALRAQGD-LTKEKKDLLGELSKVLSISTERHRAEVRRAV 73

Query: 107 ADDIILRIREWRKAS 121
            D+ +  I       
Sbjct: 74  NDERLTTIAHNMSGP 88

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.9 bits (131), Expect = 3e-08
 Identities = 54/345 (15%), Positives = 93/345 (26%), Gaps = 114/345 (33%)

Query: 3   YQLSDSSGTDDDLPPSHHNRFQ---------RGVRPT---------GNGRSAVIGSASL- 43
            Q       +      + +R Q           +RP          G+G++ V     L 
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173

Query: 44  PRMQNDMATQIH--------SVE------QDAYSSVLRAFKAQSD---AITWEKESLITE 86
            ++Q  M  +I         S E      Q     +   + ++SD    I     S+  E
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233

Query: 87  LRKELRVSDEEHRELLSKVNADDIILR-IREWR--KASGLQPGMPSIPQPVHDPAPSPTV 143
           LR+ L+   + +   L       ++L  ++  +   A  L                   +
Sbjct: 234 LRRLLK--SKPYENCL-------LVLLNVQNAKAWNAFNLS---------------CKIL 269

Query: 144 SASRKKTKTSQSVA-SLSTGAPSPGMHPSVQPSSSALRPGPPPGSKGKKPKSFSTGLAGR 202
             +R K      V   LS    +   H S+   S  L       +  +        L  R
Sbjct: 270 LTTRFK-----QVTDFLSAATTT---HISLDHHSMTL-------TPDEVKSLLLKYLDCR 314

Query: 203 GQVANRGSSGAFPANGPSEAATYNPL----IGRKV------WTRWPEDN-----HFYEAV 247
                       P + P E  T NP     I   +      W  W   N        E+ 
Sbjct: 315 ------------PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362

Query: 248 ITDYNPNEGRH---ALV---YDINTADETWE--WVNLKEISPEDI 284
           +    P E R     L       +         W ++ +     +
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV 407

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	371
1uz3_A	102	EMSY protein; chromatin regulator, chromatin regul	99.93
2fmm_E	133	Protein EMSY; ENT domain, chromo shadow domain, EM	99.91
2dig_A	68	Lamin-B receptor; tudor domain, integral nuclear e	97.31
2l8d_A	66	Lamin-B receptor; DNA binding protein; NMR {Gallus	97.28
2equ_A	74	PHD finger protein 20-like 1; tudor domain, struct	97.22
1mhn_A	59	SurviVal motor neuron protein; SMN, SMA, spinal mu	96.97
2g3r_A	123	Tumor suppressor P53-binding protein 1; tandem tud	96.9
3p8d_A	67	Medulloblastoma antigen MU-MB-50.72; tudor domain,	96.79
4a4f_A	64	SurviVal of motor neuron-related-splicing factor;	96.77
2ldm_A	81	Uncharacterized protein; PHF20, tudor domain, epig	95.64
3qii_A	85	PHD finger protein 20; tudor domain, structural ge	96.61
1g5v_A	88	SurviVal motor neuron protein 1; mRNA processing,	96.53
3s6w_A	54	Tudor domain-containing protein 3; methylated argi	96.43
1ssf_A	156	Transformation related protein 53 binding protein	96.4
3pnw_C	77	Tudor domain-containing protein 3; FAB, structural	96.29
2eqj_A	66	Metal-response element-binding transcription facto	96.18
2d9t_A	78	Tudor domain-containing protein 3; structural geno	96.11
2m0o_A	79	PHD finger protein 1; tudor domain, H3K36ME3 bindi	95.55
4hcz_A	58	PHD finger protein 1; protein-peptide complex, tud	94.64
2eko_A	87	Histone acetyltransferase htatip; chromo domain, h	94.37
2xk0_A	69	Polycomb protein PCL; transcription, aromatic CAGE	94.32
2e5q_A	63	PHD finger protein 19; tudor domain, isoform B, st	93.04
3fdr_A	94	Tudor and KH domain-containing protein; TDRD2, str	92.89
2eqk_A	85	Tudor domain-containing protein 4; structural geno	92.47
2diq_A	110	Tudor and KH domain-containing protein; tudor doma	92.25
2rnz_A	94	Histone acetyltransferase ESA1; HAT, chromodomain,	91.96
2e5p_A	68	Protein PHF1, PHD finger protein 1; tudor domain,	90.73
3h8z_A	128	FragIle X mental retardation syndrome-related Pro;	90.37
1wgs_A	133	MYST histone acetyltransferase 1; tudor domain, MY	89.93
2ro0_A	92	Histone acetyltransferase ESA1; HAT, chromodomain,	88.0
2wac_A	218	CG7008-PA; unknown function, tudor, beta-barrel, n	87.21
3ntk_A	169	Maternal protein tudor; tudor domain, OB-fold, GER	86.66
2lcc_A	76	AT-rich interactive domain-containing protein 4A;	83.55
2eqm_A	88	PHD finger protein 20-like 1; structural genomics,	83.23
3dlm_A	213	Histone-lysine N-methyltransferase setdb1; setdb1_	81.76

>1uz3_A EMSY protein; chromatin regulator, chromatin regulators, royal family domain; 1.1A {Homo sapiens} SCOP: a.283.1.1 PDB: 1utu_A

Probab=99.93  E-value=3.7e-26  Score=190.75  Aligned_cols=74  Identities=28%  Similarity=0.435  Sum_probs=70.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHhCCChHHHHHHHHHhchhHHHHHHHHHhhhc
Q 017436           47 QNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKAS  121 (371)
Q Consensus        47 ~~~~~~~Ih~LE~eAY~sVLrAF~AQS~~LSWeKE~LLTeLR~eL~IS~eEH~~~l~~v~~De~i~~iRe~r~~g  121 (371)
                      .++++.+||+||++||++||+||+||+ +||||||+|||+||++||||||||+++|+++++|+.|++||++..+.
T Consensus        15 ~~e~~~~l~~LEleAY~svlrAf~AqG-~Lsweke~LLt~LR~~L~IS~eeH~~elrr~~sDe~l~~Ire~~~g~   88 (102)
T 1uz3_A           15 RDECKRILRKLELEAYAGVISALRAQG-DLTKEKKDLLGELSKVLSISTERHRAEVRRAVNDERLTTIAHNMSGP   88 (102)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTCHHHHHHHHHHHCS
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhcchHHHHHHHHHhcCC
Confidence            359999999999999999999999995 59999999999999999999999999999999999999999998765

>2fmm_E Protein EMSY; ENT domain, chromo shadow domain, EMSY protein, heterochroma protein 1, transcription; 1.80A {Homo sapiens} SCOP: a.283.1.1

Probab=99.91  E-value=7.4e-25  Score=190.01  Aligned_cols=73  Identities=29%  Similarity=0.439  Sum_probs=69.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHhCCChHHHHHHHHHhchhHHHHHHHHHhhh
Q 017436           47 QNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKA  120 (371)
Q Consensus        47 ~~~~~~~Ih~LE~eAY~sVLrAF~AQS~~LSWeKE~LLTeLR~eL~IS~eEH~~~l~~v~~De~i~~iRe~r~~  120 (371)
                      .++++.+||+||++||++||+||+||+ +||||||+|||+||++||||||||+++|+++.+|+.|++||++..+
T Consensus         7 ~~e~~~~lr~LEleAY~svl~Af~AqG-~LSweke~LLt~LR~~L~IS~eeH~~elrr~~sDe~l~~I~~~~~g   79 (133)
T 2fmm_E            7 RDECKRILRKLELEAYAGVISALRAQG-DLTKEKKDLLGELSKVLSISTERHRAEVRRAVNDERLTTIAHNMSG   79 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHCHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhhHHHHHHHHHhhcC
Confidence            469999999999999999999999995 5999999999999999999999999999999999999999998733

>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1

Probab=97.31  E-value=0.00013  Score=57.07  Aligned_cols=40  Identities=25%  Similarity=0.377  Sum_probs=36.5

Q ss_pred             ccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCCC
Q 017436          229 IGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD  268 (371)
Q Consensus       229 VGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~~  268 (371)
                      ||..|+-+||-|+.||++.|++++...-.+.|.|.+++.+
T Consensus        15 vgd~VmaRW~Gd~~yYparItSits~~~~Y~VkfKdgT~e   54 (68)
T 2dig_A           15 DGEVVRGRWPGSSLYYEVEILSHDSTSQLYTVKYKDGTEL   54 (68)
T ss_dssp             SSCEEEEECTTTCCEEEEEEEEEETTTTEEEEECTTSCEE
T ss_pred             cCCEEEEEccCCccceEEEEEEeccCCceEEEEecCCCEE
Confidence            7889999999999999999999998888999999996665

>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}

Probab=97.28  E-value=0.00013  Score=56.73  Aligned_cols=40  Identities=28%  Similarity=0.448  Sum_probs=36.6

Q ss_pred             ccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCCC
Q 017436          229 IGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD  268 (371)
Q Consensus       229 VGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~~  268 (371)
                      ||-.|.-+||-|+.||++.|++++..+-.+.|.|-+++.+
T Consensus        12 vgd~VmaRW~Gd~~yYparI~Si~s~~~~Y~V~fKdgT~e   51 (66)
T 2l8d_A           12 DGEVVMGRWPGSVLYYEVQVTSYDDASHLYTVKYKDGTEL   51 (66)
T ss_dssp             SSCEEEEECTTSSCEEEEEEEEEETTTTEEEEEETTSCEE
T ss_pred             cCCEEEEEcCCCccceEEEEEEeccCCceEEEEecCCCEE
Confidence            7889999999999999999999998888999999996665

>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.22  E-value=0.00038  Score=54.81  Aligned_cols=53  Identities=21%  Similarity=0.391  Sum_probs=41.8

Q ss_pred             CccccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCCCCcceeeeccCCCC
Q 017436          226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISP  281 (371)
Q Consensus       226 ~sLVGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~~EtwEwVdL~e~sp  281 (371)
                      .--||..|..+|. |+.||.|+|++.+.+ +...|.|+|+ -.|+-...+|+-|++
T Consensus         9 ~~kvGd~clA~ws-Dg~~Y~A~I~~v~~~-~~~~V~f~Dy-n~e~v~~~~lrplp~   61 (74)
T 2equ_A            9 DFKAGEEVLARWT-DCRYYPAKIEAINKE-GTFTVQFYDG-VIRCLKRMHIKAMPE   61 (74)
T ss_dssp             CCCTTCEEEEECS-SSSEEEEEEEEESTT-SSEEEEETTS-CEEEECGGGEECCCG
T ss_pred             CCCCCCEEEEECC-CCCEEEEEEEEECCC-CEEEEEEecC-CeEEecHHHCeeCCh
Confidence            4568999999999 999999999999876 7899999999 544444445555544

>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*

Probab=96.97  E-value=0.00065  Score=50.39  Aligned_cols=53  Identities=23%  Similarity=0.280  Sum_probs=39.9

Q ss_pred             ccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCCCCcceeeeccCCCC
Q 017436          229 IGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISP  281 (371)
Q Consensus       229 VGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~~EtwEwVdL~e~sp  281 (371)
                      +|..|...|.+|+.||.|+|++.+...+...|.|.|-.-.|+=..-||+.+++
T Consensus         6 ~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~f~DYGn~e~v~~~~Lr~~~~   58 (59)
T 1mhn_A            6 VGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSPIC   58 (59)
T ss_dssp             TTCEEEEECTTTSCEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGGCBCTTC
T ss_pred             cCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEcCCCEEEEcHHHeeCCCC
Confidence            68899999999999999999999887788899998855443322234444443

>2g3r_A Tumor suppressor P53-binding protein 1; tandem tudor domains, cell cycle-transcription complex; 1.25A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2ig0_A* 3lgf_A* 3lgl_A* 3lh0_A* 1xni_A

Probab=96.90  E-value=0.00053  Score=59.04  Aligned_cols=42  Identities=26%  Similarity=0.519  Sum_probs=37.8

Q ss_pred             CccccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCCC
Q 017436          226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD  268 (371)
Q Consensus       226 ~sLVGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~~  268 (371)
                      .++||.||..+|.+|..||-|+|+.+ ...+++.|.|||++..
T Consensus         4 ~~~~G~rV~AkWsdn~~yYpG~V~~~-~~~~ky~V~FdDg~~~   45 (123)
T 2g3r_A            4 NSFVGLRVVAKWSSNGYFYSGKITRD-VGAGKYKLLFDDGYEC   45 (123)
T ss_dssp             -CCTTCEEEEECTTTCCEEEEEEEEE-EETTEEEEEETTSCEE
T ss_pred             ccccceEEEEEeccCCcCcccEEEEe-ccCCeEEEEEcCCCee
Confidence            67999999999998889999999984 7779999999999985

>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}

Probab=96.79  E-value=0.00085  Score=52.27  Aligned_cols=39  Identities=26%  Similarity=0.455  Sum_probs=34.8

Q ss_pred             cccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCCC
Q 017436          228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD  268 (371)
Q Consensus       228 LVGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~~  268 (371)
                      .||.+|..+| .|+.||+|+|++.+.+ +.+.|.|++|+.+
T Consensus         8 ~vGd~vmArW-~D~~yYpA~I~si~~~-~~Y~V~F~dG~~e   46 (67)
T 3p8d_A            8 QINEQVLACW-SDCRFYPAKVTAVNKD-GTYTVKFYDGVVQ   46 (67)
T ss_dssp             CTTCEEEEEC-TTSCEEEEEEEEECTT-SEEEEEETTSCEE
T ss_pred             ccCCEEEEEc-CCCCEeeEEEEEECCC-CeEEEEEeCCceE
Confidence            4899999999 9999999999999998 6799999995554

>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*

Probab=96.77  E-value=0.0015  Score=49.22  Aligned_cols=52  Identities=25%  Similarity=0.389  Sum_probs=42.6

Q ss_pred             CCccccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCCCCcceeeeccCC
Q 017436          225 YNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEI  279 (371)
Q Consensus       225 ~~sLVGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~~EtwEwVdL~e~  279 (371)
                      ...-+|..|...|.+|+.||.|+|++.+...+...|.|.+-.-.   |.|.+++|
T Consensus         7 ~~~~vGd~c~A~~s~Dg~wYrA~I~~v~~~~~~~~V~fvdYGn~---e~V~~~~L   58 (64)
T 4a4f_A            7 HSWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNA---EVTPLLNL   58 (64)
T ss_dssp             SCCCTTCEEEEECTTTSSEEEEEEEEEETTTTEEEEEETTTTEE---EEEEGGGE
T ss_pred             CCCCCCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEecCCE---EEEeHHHc
Confidence            35568999999999999999999999998878899999886555   34655554

>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}

Probab=95.64  E-value=0.00032  Score=56.47  Aligned_cols=38  Identities=26%  Similarity=0.524  Sum_probs=32.6

Q ss_pred             ccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCCC
Q 017436          229 IGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD  268 (371)
Q Consensus       229 VGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~~  268 (371)
                      +|.+|..+|. |+.||.|+|++.+.+ +...|.|++|+.+
T Consensus         9 vGd~clAkws-Dg~wY~A~I~~v~~~-~~y~V~F~DGn~E   46 (81)
T 2ldm_A            9 INEQVLASWS-DSRFYPAKVTAVNKD-GTYTVKFYDGVVQ   46 (81)
Confidence            7899999999 999999999999854 5789999985443

>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}

Probab=96.61  E-value=0.0013  Score=53.51  Aligned_cols=41  Identities=24%  Similarity=0.409  Sum_probs=36.2

Q ss_pred             CccccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCCC
Q 017436          226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD  268 (371)
Q Consensus       226 ~sLVGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~~  268 (371)
                      .=.||.+|..+| .|..||.|.|++.+.+ +.+.|.|++|+.+
T Consensus        21 ~f~vGd~VlArW-~D~~yYPAkI~sV~~~-~~YtV~F~DG~~e   61 (85)
T 3qii_A           21 EFQINEQVLACW-SDCRFYPAKVTAVNKD-GTYTVKFYDGVVQ   61 (85)
T ss_dssp             CCCTTCEEEEEC-TTSCEEEEEEEEECTT-SEEEEEETTSCEE
T ss_pred             ccccCCEEEEEe-CCCCEeeEEEEEECCC-CeEEEEEeCCCeE
Confidence            446999999999 9999999999999987 6799999995554

>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1

Probab=96.53  E-value=0.002  Score=52.11  Aligned_cols=52  Identities=25%  Similarity=0.321  Sum_probs=41.9

Q ss_pred             ccccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCCCCcceeeeccCCCC
Q 017436          227 PLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISP  281 (371)
Q Consensus       227 sLVGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~~EtwEwVdL~e~sp  281 (371)
                      --||-.|...|.+|+.||.|+|+..+...+...|.|.+-.-.|   -|.+.+|-|
T Consensus        11 ~kvGd~C~A~ys~Dg~wYrA~I~~i~~~~~~~~V~fiDYGN~E---~V~~~~Lrp   62 (88)
T 1g5v_A           11 WKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNRE---EQNLSDLLS   62 (88)
T ss_dssp             CCSSCEEEEECTTTCCEEEEEEEEEETTTTEEEEEETTTCCEE---EEEGGGCBC
T ss_pred             CCCCCEEEEEECCCCCEEEEEEEEecCCCCEEEEEEecCCCEE---EEcHHHccc
Confidence            4589999999999999999999999987788999998766664   354555443

>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*

Probab=96.43  E-value=0.0028  Score=45.95  Aligned_cols=48  Identities=23%  Similarity=0.246  Sum_probs=36.5

Q ss_pred             ccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCCCCcceeeeccCC
Q 017436          229 IGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEI  279 (371)
Q Consensus       229 VGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~~EtwEwVdL~e~  279 (371)
                      +|-.+...|.+|+.||.|+|++.+...+...|.|.|-.-.   |.|.+++|
T Consensus         4 ~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~fvDYGn~---e~v~~~~l   51 (54)
T 3s6w_A            4 PGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNY---EEVLLSNI   51 (54)
T ss_dssp             TTCEEEEEETTTTEEEEEEEEEC--CCSEEEEEETTTCCE---EEEEGGGE
T ss_pred             CCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEccCCe---EEEeHHHE
Confidence            6788999999999999999999998878888998775544   34544443

>1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1

Probab=96.40  E-value=0.0023  Score=57.02  Aligned_cols=42  Identities=26%  Similarity=0.519  Sum_probs=37.7

Q ss_pred             CccccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCCC
Q 017436          226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD  268 (371)
Q Consensus       226 ~sLVGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~~  268 (371)
                      +++||.||..+|.+++-||.|+|+.+ ...+++.|.||||...
T Consensus         8 ~~~iG~rVfArWsd~~yyYpG~V~~~-~~~~~Y~V~FdDG~~k   49 (156)
T 1ssf_A            8 NSFVGLRVVAKWSSNGYFYSGKITRD-VGAGKYKLLFDDGYEC   49 (156)
T ss_dssp             CCSTTCEEEECSSCSSEEEEEEEEEC-CTTTEEEEECTTSCEE
T ss_pred             cchhccEEEEEcCCCCcccccEEEEe-ccCCEEEEEEcCCCee
Confidence            66999999999999999999999996 5567799999999984

>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}

Probab=96.29  E-value=0.0027  Score=49.87  Aligned_cols=56  Identities=21%  Similarity=0.198  Sum_probs=42.3

Q ss_pred             ccccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCCCCcceeeeccCCCCc
Q 017436          227 PLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE  282 (371)
Q Consensus       227 sLVGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~~EtwEwVdL~e~spe  282 (371)
                      --+|..|...|.+|+.||.|+|++.+...+...|.|.|-.-.|+=..-||+.|+++
T Consensus        18 ~kvGd~C~A~ys~Dg~wYRA~I~~i~~~~~~~~V~fvDYGN~e~V~~~~Lr~l~~~   73 (77)
T 3pnw_C           18 WKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPIQTE   73 (77)
T ss_dssp             CCTTCEEEEEETTTTEEEEEEEEEECTTSSEEEEEETTTCCEEEEEGGGEECC---
T ss_pred             CCcCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEcCCCeEEEeHHHeEECChh
Confidence            45889999999999999999999999877788899988655544334456666655

>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}

Probab=96.18  E-value=0.0036  Score=48.83  Aligned_cols=49  Identities=27%  Similarity=0.519  Sum_probs=43.9

Q ss_pred             cccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCCCCcceeeeccCCCC
Q 017436          228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISP  281 (371)
Q Consensus       228 LVGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~~EtwEwVdL~e~sp  281 (371)
                      -||.-|..+| .|.-||+|+|+.-|..++.-.|.|.|+..-    ||..++|.+
T Consensus        15 ~vGddVLA~w-tDGl~Y~gtI~~V~~~~gtC~V~F~D~s~~----w~~~kdi~~   63 (66)
T 2eqj_A           15 EEGQDVLARW-SDGLFYLGTIKKINILKQSCFIIFEDSSKS----WVLWKDIQT   63 (66)
T ss_dssp             CTTCEEEEEC-TTSCEEEEEEEEEETTTTEEEEEETTTEEE----EEETTTEEC
T ss_pred             cCCCEEEEEE-ccCcEEEeEEEEEccCCcEEEEEEccCCEE----EEEeecccc
Confidence            4888999999 999999999999999999999999999876    897777654

>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1

Probab=96.11  E-value=0.005  Score=48.25  Aligned_cols=57  Identities=19%  Similarity=0.198  Sum_probs=44.0

Q ss_pred             CccccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCCCCcceeeeccCCCCc
Q 017436          226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE  282 (371)
Q Consensus       226 ~sLVGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~~EtwEwVdL~e~spe  282 (371)
                      ..-+|..|...|.+|+.||.|+|+..+...+...|.|-|-.-.|+=..-||+.|+++
T Consensus         9 ~~~~G~~c~A~~s~Dg~wYRA~I~~i~~~~~~~~V~fiDYGN~e~V~~~~Lr~l~~~   65 (78)
T 2d9t_A            9 VWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFTDYGNYEEVLLSNIKPVQTE   65 (78)
T ss_dssp             CCCTTCEEEEECTTTCCEEEEEEEEECSSSSEEEEEETTTTEEEEEEGGGEEECCCC
T ss_pred             CCCcCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEcCCCeEEEcHHHeEeCCHH
Confidence            446889999999999999999999998877888899877655544334456666654

>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}

Probab=95.55  E-value=0.054  Score=43.47  Aligned_cols=50  Identities=24%  Similarity=0.392  Sum_probs=43.5

Q ss_pred             ccccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCCCCcceeeeccCCCC
Q 017436          227 PLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISP  281 (371)
Q Consensus       227 sLVGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~~EtwEwVdL~e~sp  281 (371)
                      =.+|.-|-.+| .|.-||.|+|..-|...++..|.|+|++.-    |+..++|.+
T Consensus        27 f~eGeDVLarw-sDGlfYLGTI~kV~~~~e~ClV~F~D~S~~----W~~~kdi~~   76 (79)
T 2m0o_A           27 LWEGQDVLARW-TDGLLYLGTIKKVDSAREVCLVQFEDDSQF----LVLWKDISP   76 (79)
T ss_dssp             CCTTCEEEBCC-TTSCCCEEEEEEEETTTTEEEEEETTSCEE----EEETTTBCC
T ss_pred             eccCCEEEEEe-cCCCEEeEEEEEeccCCCEEEEEEcCCCeE----EEEeecccc
Confidence            34788899999 678999999999999999999999999876    998888765

>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}

Probab=94.64  E-value=0.028  Score=42.83  Aligned_cols=49  Identities=22%  Similarity=0.403  Sum_probs=41.9

Q ss_pred             cccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCCCCcceeeeccCCCC
Q 017436          228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISP  281 (371)
Q Consensus       228 LVGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~~EtwEwVdL~e~sp  281 (371)
                      .+|..|..+|-| .-||-|+|...|...+...|.|+|++.-    |+.+++|.+
T Consensus         5 ~~GedVLarwsD-G~fYlGtI~~V~~~~~~clV~F~D~s~~----W~~~kdi~~   53 (58)
T 4hcz_A            5 WEGQDVLARWTD-GLLYLGTIKKVDSAREVCLVQFEDDSQF----LVLWKDISP   53 (58)
T ss_dssp             CTTCEEEEECTT-SCEEEEEEEEEETTTTEEEEEETTSCEE----EEEGGGEEE
T ss_pred             ccCCEEEEEecC-CCEEeEEEEEEecCCCEEEEEEcCCCeE----EEEhHHccc
Confidence            367789999966 9999999999999988999999999876    887776654

>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.37  E-value=0.14  Score=41.36  Aligned_cols=65  Identities=15%  Similarity=0.173  Sum_probs=51.0

Q ss_pred             CccccceeeeccC---CCCCceeeeeeeccCCCC--ceeeeccCCCCCCcceeeeccCCCCccccccCCCC
Q 017436          226 NPLIGRKVWTRWP---EDNHFYEAVITDYNPNEG--RHALVYDINTADETWEWVNLKEISPEDIKWEGDEP  291 (371)
Q Consensus       226 ~sLVGrrVkv~WP---dDn~fYegvIt~Yn~~tg--~H~LvYD~g~~~EtwEwVdL~e~spedi~W~~e~p  291 (371)
                      .-.||-+|.++++   .++.||+|.|.+.+...+  ++-|.|..-+..=- |||....|.-..++|...++
T Consensus         9 ~~~vG~kv~v~~~~~~~~~~~y~AkIl~i~~~~~~~~YyVHY~g~NkRlD-EWV~~~rl~~~~~~~p~~~~   78 (87)
T 2eko_A            9 EIIEGCRLPVLRRNQDNEDEWPLAEILSVKDISGRKLFYVHYIDFNRRLD-EWVTHERLDLKKIQFPKKEA   78 (87)
T ss_dssp             SCCTTCEEEBCEECTTCCEECCEEEEEEECCSSSCCCEEEEECSSCSCCC-EEECTTTBCGGGCCCCCCSC
T ss_pred             cccCCCEEEEEEcccCCCCeEEEEEEEEEEEcCCCcEEEEEeCCCCcccc-cccCHhHcccccccCCCCCC
Confidence            3458999999997   589999999998887543  67789998877321 79999888777788875433

>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}

Probab=94.32  E-value=0.068  Score=42.00  Aligned_cols=47  Identities=15%  Similarity=0.390  Sum_probs=35.6

Q ss_pred             CccccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCCCCcceeeeccCC
Q 017436          226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEI  279 (371)
Q Consensus       226 ~sLVGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~~EtwEwVdL~e~  279 (371)
                      .=.+|.-|-++|=| ..||.|+|++.  .+.+-.|.|+|+++-    ||.+++|
T Consensus        15 ~~~~geDVL~rw~D-G~fYLGtIVd~--~~~~ClV~FeD~S~~----Wv~~kdi   61 (69)
T 2xk0_A           15 TYALQEDVFIKCND-GRFYLGTIIDQ--TSDQYLIRFDDQSEQ----WCEPDKL   61 (69)
T ss_dssp             CCCTTCEEEEECTT-SCEEEEEEEEE--CSSCEEEEETTCCEE----EECTTTE
T ss_pred             ccccCCeEEEEecC-CCEEEEEEEec--CCceEEEEecCCcce----eeeHHHH
Confidence            33588999999965 99999999764  356667899998875    8854443

>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.04  E-value=0.092  Score=40.57  Aligned_cols=51  Identities=24%  Similarity=0.448  Sum_probs=42.6

Q ss_pred             cccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCCCCcceeeeccCCCCcc
Q 017436          228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPED  283 (371)
Q Consensus       228 LVGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~~EtwEwVdL~e~sped  283 (371)
                      .+|.-|..+| .|.-||-|+|+.-|.....-.|.|.|++.-    ||..++|.+-.
T Consensus         9 ~eGqdVLarW-sDGlfYlgtV~kV~~~~~~ClV~FeD~s~~----wv~~kdi~~~~   59 (63)
T 2e5q_A            9 TEGQYVLCRW-TDGLYYLGKIKRVSSSKQSCLVTFEDNSKY----WVLWKDIQHAG   59 (63)
T ss_dssp             CTTCEEEEEC-TTSCEEEEEECCCCSTTSEEEEEETTSCEE----EEEGGGEECCS
T ss_pred             ecCCEEEEEe-cCCCEEEEEEEEEecCCCEEEEEEccCcee----EEEeecccccC
Confidence            4778888999 568999999999999888888899998876    99888876543

>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1

Probab=92.89  E-value=0.072  Score=42.05  Aligned_cols=55  Identities=15%  Similarity=0.204  Sum_probs=37.5

Q ss_pred             CccccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCCCCcceeeeccCCCC
Q 017436          226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISP  281 (371)
Q Consensus       226 ~sLVGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~~EtwEwVdL~e~sp  281 (371)
                      ..-+|..+-+.|++|+.||.|+|..... ++.-.|.|-|-.-.|+-..-||+.|.+
T Consensus        27 ~~~~G~~c~a~~~~d~~wyRA~I~~~~~-~~~~~V~fvDyGn~e~v~~~~lr~l~~   81 (94)
T 3fdr_A           27 TVHVGDIVAAPLPTNGSWYRARVLGTLE-NGNLDLYFVDFGDNGDCPLKDLRALRS   81 (94)
T ss_dssp             CCCTTCEEEEEETTTTEEEEEEEEEECT-TSCEEEEETTTCCEEEECGGGCEECCG
T ss_pred             CCCCCCEEEEEECCCCeEEEEEEEEECC-CCeEEEEEEcCCCeEEEEHHHhhhcCH
Confidence            3458889999999999999999999975 355667665555443222224444443

>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.47  E-value=0.14  Score=41.64  Aligned_cols=45  Identities=11%  Similarity=0.073  Sum_probs=40.3

Q ss_pred             cCCccccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCCC
Q 017436          224 TYNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD  268 (371)
Q Consensus       224 ~~~sLVGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~~  268 (371)
                      .+..-+|.-|-+..+++|.||.|.|..-+.++.-|-+.||.|..+
T Consensus        19 ~~~~k~g~~vaak~~d~n~WyRakV~~v~~~~~veVl~~DyGn~~   63 (85)
T 2eqk_A           19 PVKWENDMHCAVKIQDKNQWRRGQIIRMVTDTLVEVLLYDVGVEL   63 (85)
T ss_dssp             CCCCCSSCEEEEECSSSCCEEEEEEEEECSSSEEEEECTTTCCEE
T ss_pred             ccCccCCCEEEEEeCCCCeEEEEEEEEecCCCeEEEEEEccCCEE
Confidence            345568888999999999999999999999999999999999885

>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1

Probab=92.25  E-value=0.085  Score=42.86  Aligned_cols=55  Identities=16%  Similarity=0.221  Sum_probs=38.3

Q ss_pred             CccccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCCCCcceeeeccCCCC
Q 017436          226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISP  281 (371)
Q Consensus       226 ~sLVGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~~EtwEwVdL~e~sp  281 (371)
                      ...+|.-+-+.|.+|+.||.|+|+..+.+ +.-.|.|-|-.-.|+-.+-||+.+.+
T Consensus        32 ~~~~G~~c~a~~~~d~~wyRA~V~~~~~~-~~~~V~fvDyGn~e~v~~~~Lr~l~~   86 (110)
T 2diq_A           32 TVHVGDIVAAPLPTNGSWYRARVLGTLEN-GNLDLYFVDFGDNGDCPLKDLRALRS   86 (110)
T ss_dssp             CCCTTCEEEECCTTTCSCEEEEECCCCSS-SCEEEEETTTCCEEEECGGGCEECCH
T ss_pred             CCCCCCEEEEEECCCCeEEEEEEEEECCC-CeEEEEEEeCCCeEEEehHHhhcCcH
Confidence            34578889999999999999999999874 45567666655543323334555544

>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}

Probab=91.96  E-value=0.83  Score=37.50  Aligned_cols=58  Identities=16%  Similarity=0.305  Sum_probs=45.5

Q ss_pred             cccceeeeccCCCCCceeeeeeeccCCCC--ceeeeccCCCCCCcceeeeccCCCCc-cccccC
Q 017436          228 LIGRKVWTRWPEDNHFYEAVITDYNPNEG--RHALVYDINTADETWEWVNLKEISPE-DIKWEG  288 (371)
Q Consensus       228 LVGrrVkv~WPdDn~fYegvIt~Yn~~tg--~H~LvYD~g~~~EtwEwVdL~e~spe-di~W~~  288 (371)
                      -||-+|.+++  ++.||+|.|.+-....+  ++-|.|..-+..=- |||+...|.-. +++|..
T Consensus        27 ~vG~kv~v~~--~~~~yeAeIl~ir~~~g~~~YYVHY~g~NkRlD-EWV~~~RI~l~~~v~~p~   87 (94)
T 2rnz_A           27 IIKCQCWVQK--NDEERLAEILSINTRKAPPKFYVHYVNYNKRLD-EWITTDRINLDKEVLYPK   87 (94)
T ss_dssp             CTTEEEEEEC--SSCEEEEEEEEEECSSSSCEEEEECTTSCSTTC-EEEETTTBCSSSCCCCCC
T ss_pred             cCCCEEEEEE--CCEEEEEEEEEEEEcCCCcEEEEEeCCcCcccc-cccCHHHcccccCccCCC
Confidence            4899999997  88999999997776553  67789999888322 79998888655 488864

>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=90.73  E-value=0.19  Score=39.36  Aligned_cols=49  Identities=22%  Similarity=0.403  Sum_probs=41.0

Q ss_pred             cccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCCCCcceeeeccCCCC
Q 017436          228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISP  281 (371)
Q Consensus       228 LVGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~~EtwEwVdL~e~sp  281 (371)
                      .+|.-|..+|-| .-||.|+|+.-|.....-.|.|.|++.-    ||..++|.+
T Consensus        11 ~eGqdVLarWsD-GlfYlGtV~kV~~~~~~ClV~FeD~s~~----wv~~kdi~~   59 (68)
T 2e5p_A           11 WEGQDVLARWTD-GLLYLGTIKKVDSAREVCLVQFEDDSQF----LVLWKDISP   59 (68)
T ss_dssp             CTTCEEEEECTT-SSEEEEEEEEEETTTTEEEEEETTTEEE----EEETTTEEC
T ss_pred             ccCCEEEEEecC-CcEEEeEEEEEecCCcEEEEEEccCCee----eeeeecccc
Confidence            477888899966 9999999999999888888999998876    886666543

>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*

Probab=90.37  E-value=0.28  Score=42.20  Aligned_cols=49  Identities=16%  Similarity=0.087  Sum_probs=35.1

Q ss_pred             CccccceeeeccCCCC----CceeeeeeeccCCCCceeeeccCCCCCCcceeeecc
Q 017436          226 NPLIGRKVWTRWPEDN----HFYEAVITDYNPNEGRHALVYDINTADETWEWVNLK  277 (371)
Q Consensus       226 ~sLVGrrVkv~WPdDn----~fYegvIt~Yn~~tg~H~LvYD~g~~~EtwEwVdL~  277 (371)
                      +--+|.+|.++|-.++    +||.|+|+....  ..|.|.|+.-+..=+ |||.+.
T Consensus        60 ~f~~gd~VEV~~~~~d~ep~gWw~a~I~~~kg--~f~~V~y~~~~~~~~-EiV~~~  112 (128)
T 3h8z_A           60 EITEGDEVEVYSRANEQEPCGWWLARVRMMKG--DFYVIEYAACDATYN-EIVTLE  112 (128)
T ss_dssp             CCCTTCEEEEEECC---CCCEEEEEEEEEEET--TEEEEEETTC----C-EEECGG
T ss_pred             CCCCCCEEEEEecCCCCCcCccEEEEEEEeeC--CEEEEEEcCCCCCcc-eEEehh
Confidence            4459999999999888    899999999984  689999988665222 577433

>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3

Probab=89.93  E-value=1.5  Score=37.68  Aligned_cols=50  Identities=20%  Similarity=0.278  Sum_probs=38.4

Q ss_pred             cccceeeeccCCCCCceeeeeeeccC----CCCceeeeccCCCCCCcceeeeccCC
Q 017436          228 LIGRKVWTRWPEDNHFYEAVITDYNP----NEGRHALVYDINTADETWEWVNLKEI  279 (371)
Q Consensus       228 LVGrrVkv~WPdDn~fYegvIt~Yn~----~tg~H~LvYD~g~~~EtwEwVdL~e~  279 (371)
                      -||-+|.++|+ |+.||+|.|.+-..    ..-.+.|.|..-+..=- |||....|
T Consensus        14 ~vGe~v~~~~~-d~~~y~AkIl~i~~~~~~~~~~YyVHY~gwNkR~D-EWV~~~ri   67 (133)
T 1wgs_A           14 EIGETYLCRRP-DSTWHSAEVIQSRVNDQEGREEFYVHYVGFNRRLD-EWVDKNRL   67 (133)
T ss_dssp             CTTSEEEEEET-TTEEEEEEEEEEEEETTTTEEEEEEECTTTCSSCC-EEECTTTS
T ss_pred             CCCCEEEEEeC-CCCEEEEEEEEEEeccCCCceEEEEeccCcCCCce-eecChhhc
Confidence            48999999998 77999999997553    23467799998777322 79976665

>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}

Probab=88.00  E-value=0.47  Score=38.63  Aligned_cols=58  Identities=16%  Similarity=0.293  Sum_probs=44.8

Q ss_pred             cccceeeeccCCCCCceeeeeeeccCCC--CceeeeccCCCCCCcceeeeccCCCCc-cccccC
Q 017436          228 LIGRKVWTRWPEDNHFYEAVITDYNPNE--GRHALVYDINTADETWEWVNLKEISPE-DIKWEG  288 (371)
Q Consensus       228 LVGrrVkv~WPdDn~fYegvIt~Yn~~t--g~H~LvYD~g~~~EtwEwVdL~e~spe-di~W~~  288 (371)
                      -||-+|.+++  ++.||+|.|.+-+...  -.+-|.|..-+..=- |||....|.-. +++|..
T Consensus        25 ~vG~kv~v~~--~~~~y~AkIl~ir~~~~~~~YyVHY~g~NkRlD-EWV~~~rl~l~~~v~~p~   85 (92)
T 2ro0_A           25 IIKCQCWVQK--NDEERLAEILSINTRKAPPKFYVHYVNYNKRLD-EWITTDRINLDKEVLYPK   85 (92)
T ss_dssp             CTTCEEEEEE--TTEEEEEEEEEEECSSSSCEEEEEETTSCTTSC-EEEEGGGEETTSCEEECC
T ss_pred             cCCCEEEEEE--CCEEEEEEEEEEEEcCCCcEEEEEeCCcCcccc-cccCHhHcccccCccCCC
Confidence            4899999997  8899999999777655  367789998887311 79988888554 477763

>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}

Probab=87.21  E-value=0.45  Score=41.60  Aligned_cols=53  Identities=23%  Similarity=0.309  Sum_probs=37.4

Q ss_pred             ccccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCCCCcceeeeccCCCC
Q 017436          227 PLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISP  281 (371)
Q Consensus       227 sLVGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~~EtwEwVdL~e~sp  281 (371)
                      .-+|..|-..|.+|+.||.|+|++...  +.-.|.|-|-.-.|+..+=+|+.+++
T Consensus        52 ~~~g~~c~a~~~~d~~wyRa~V~~v~~--~~~~V~~vDyG~~~~v~~~~l~~l~~  104 (218)
T 2wac_A           52 PKRGDLVAAQFTLDNQWYRAKVERVQG--SNATVLYIDYGNKETLPTNRLAALPP  104 (218)
T ss_dssp             CCTTCEEEEECTTTCCEEEEEEEEEET--TEEEEEETTTCCEEEEEGGGEEECCG
T ss_pred             CCcCCEEEEEECCCCeEEEEEEEEecC--CeEEEEEEecCCeEEEchHHcccCCh
Confidence            458889999999999999999999876  55667765544433333335555554

>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*

Probab=86.66  E-value=0.38  Score=41.72  Aligned_cols=53  Identities=17%  Similarity=0.231  Sum_probs=37.4

Q ss_pred             ccccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCCCCcceeeeccCCCCc
Q 017436          227 PLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE  282 (371)
Q Consensus       227 sLVGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~~EtwEwVdL~e~spe  282 (371)
                      .-+|.-+-..|++|+.||.|.|+..+++. .-.|.|-|-.-.|++  =+|+.+.++
T Consensus        48 ~~~G~~c~A~~~~d~~wyRa~I~~~~~~~-~~~V~fvDyGn~~~v--~~lr~l~~~  100 (169)
T 3ntk_A           48 LKEGALCVAQFPEDEVFYRAQIRKVLDDG-KCEVHFIDFGNNAVT--QQFRQLPEE  100 (169)
T ss_dssp             CCTTCEEEEEETTTTEEEEEEEEEECSTT-CEEEEETTTTEEEEE--SCEECCCHH
T ss_pred             CCCCCEEEEEECCCCcEEEEEEEEECCCC-EEEEEEEecCCeEEh--hhhhccCHH
Confidence            34777888999999999999999998754 566766444443332  355666543

>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}

Probab=83.55  E-value=0.61  Score=36.55  Aligned_cols=51  Identities=27%  Similarity=0.397  Sum_probs=38.9

Q ss_pred             cccceeeeccCCC--CCceeeeeeeccCCCC--ceeeeccCCCCCCcceeeeccCC
Q 017436          228 LIGRKVWTRWPED--NHFYEAVITDYNPNEG--RHALVYDINTADETWEWVNLKEI  279 (371)
Q Consensus       228 LVGrrVkv~WPdD--n~fYegvIt~Yn~~tg--~H~LvYD~g~~~EtwEwVdL~e~  279 (371)
                      .||-+|.++|+++  ..||+|.|.+-+...+  ++.|-|..-+..=- |||....|
T Consensus         7 ~vGekV~~~~~d~k~~~~y~AkIl~i~~~~~~~~Y~VHY~gwnkr~D-EWV~~~ri   61 (76)
T 2lcc_A            7 LTGTKVKVKYGRGKTQKIYEASIKSTEIDDGEVLYLVHYYGWNVRYD-EWVKADRI   61 (76)
T ss_dssp             STTCEEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEETTSCCSSC-EEEEGGGE
T ss_pred             CCCCEEEEEeCCCCCCCEEEEEEEEEEccCCceEEEEEeCCcCCCce-EecChhhc
Confidence            4899999999953  7999999998776554  57789998777322 78865444

>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A

Probab=83.23  E-value=3.5  Score=32.99  Aligned_cols=48  Identities=17%  Similarity=0.270  Sum_probs=37.2

Q ss_pred             cccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCCCCcceeeecc
Q 017436          228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLK  277 (371)
Q Consensus       228 LVGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~~EtwEwVdL~  277 (371)
                      -||-||...-+. +.||+++|+.-+....+-.|.||.-+..-- |||+.+
T Consensus        21 ~vGmkLEA~D~~-~~~~~a~i~~v~~~~~~v~VHfdGW~~~yD-eWv~~d   68 (88)
T 2eqm_A           21 EIGARLEALDYL-QKWYPSRIEKIDYEEGKMLVHFERWSHRYD-EWIYWD   68 (88)
T ss_dssp             CSSCEEEEECTT-SCEEEEEEEEEETTTTEEEEEESSSTTTEE-EEEETT
T ss_pred             CCCCEEEEEcCC-CCeeEEEEEEEeccCCEEEEEECCCCCccc-EEeeCC
Confidence            489999887665 579999999888777888999998864311 688544

>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}

Probab=81.76  E-value=0.91  Score=42.28  Aligned_cols=42  Identities=19%  Similarity=0.423  Sum_probs=34.3

Q ss_pred             ccccceeeeccCCCC--Cceeeeeee--ccCCCCceeeeccCCCCC
Q 017436          227 PLIGRKVWTRWPEDN--HFYEAVITD--YNPNEGRHALVYDINTAD  268 (371)
Q Consensus       227 sLVGrrVkv~WPdDn--~fYegvIt~--Yn~~tg~H~LvYD~g~~~  268 (371)
                      =.||-||-..|.+.+  .||.|+|..  +.-+.-++.|.||||.+.
T Consensus        69 l~vG~RVVA~~~~~~~~~fY~GiVaE~p~~~N~~RyLVFFDDG~~~  114 (213)
T 3dlm_A           69 LYVGSRVVAKYKDGNQVWLYAGIVAETPNVKNKLRFLIFFDDGYAS  114 (213)
T ss_dssp             CCTTCEEEEEEECSSCEEEEEEEEEECCCTTTTSCEEEEETTSCEE
T ss_pred             EeEEEEEEEEecCCCCcceeeeEEEECCccCCCceEEEEEeCCCcc
Confidence            359999999999875  899999993  323446999999999984

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	371
d1uz3a1	90	a.283.1.1 (A:13-102) Emsy {Human (Homo sapiens) [T	1e-27
d1mhna_	59	b.34.9.1 (A:) Survival motor neuron protein 1, smn	6e-04
d2d9ta1	60	b.34.9.1 (A:8-67) Tudor domain-containing protein	0.002
d2diqa1	97	b.34.9.1 (A:8-104) Tudor and KH domain-containing	0.002

>d1uz3a1 a.283.1.1 (A:13-102) Emsy {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All alpha proteins
fold: ENT-like
superfamily: ENT-like
family: Emsy N terminal (ENT) domain-like
domain: Emsy
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (255), Expect = 1e-27
 Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 1/75 (1%)

Query: 48  NDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNA 107
           ++    +  +E +AY+ V+ A +AQ D +T EK+ L+ EL K L +S E HR  + +   
Sbjct: 4   DECKRILRKLELEAYAGVISALRAQGD-LTKEKKDLLGELSKVLSISTERHRAEVRRAVN 62

Query: 108 DDIILRIREWRKASG 122
           D+ +  I        
Sbjct: 63  DERLTTIAHNMSGPN 77

>d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human (Homo sapiens) [TaxId: 9606]} Length = 59

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: Survival motor neuron protein 1, smn
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (82), Expect = 6e-04
 Identities = 13/54 (24%), Positives = 17/54 (31%)

Query: 229 IGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE 282
           +G K    W ED   Y A I   +       +VY      E     +L     E
Sbjct: 6   VGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSPICE 59

>d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3, TDRD3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 60

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: Tudor domain-containing protein 3, TDRD3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.0 bits (78), Expect = 0.002
 Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 13/61 (21%)

Query: 232 KVW-------TRWPEDNHFYEAVITDYNPNEGRHALVYDI---NTADETWEWVNLKEISP 281
           KVW         + EDN FY A +   +   G  A+V      N   E     N+K +  
Sbjct: 1   KVWKPGDECFALYWEDNKFYRAEVEALHS-SGMTAVVKFTDYGNY--EEVLLSNIKPVQT 57

Query: 282 E 282
           E
Sbjct: 58  E 58

>d2diqa1 b.34.9.1 (A:8-104) Tudor and KH domain-containing protein TDRKH {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: Tudor and KH domain-containing protein TDRKH
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (80), Expect = 0.002
 Identities = 10/63 (15%), Positives = 20/63 (31%), Gaps = 1/63 (1%)

Query: 220 SEAATYNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEI 279
           S        +G  V    P +  +Y A +     N G   L +     +      +L+ +
Sbjct: 19  SVPEDLTVHVGDIVAAPLPTNGSWYRARVLGTLEN-GNLDLYFVDFGDNGDCPLKDLRAL 77

Query: 280 SPE 282
             +
Sbjct: 78  RSD 80

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	371
d1uz3a1	90	Emsy {Human (Homo sapiens) [TaxId: 9606]}	99.92
d2d9ta1	60	Tudor domain-containing protein 3, TDRD3 {Mouse (M	96.7
d1mhna_	59	Survival motor neuron protein 1, smn {Human (Homo	96.32
d2diga1	55	Lamin-b receptor {Human (Homo sapiens) [TaxId: 960	96.2
d2g3ra1	53	p53-binding protein 1, 53BP1 {Human (Homo sapiens)	94.63
d1wgsa_	133	Probable histone acetyltransferase MYST1 {Mouse (M	90.3
d2diqa1	97	Tudor and KH domain-containing protein TDRKH {Huma	89.46
d2hqxa1	90	P100 co-activator, SND1 {Human (Homo sapiens) [Tax	89.11

>d1uz3a1 a.283.1.1 (A:13-102) Emsy {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: ENT-like
superfamily: ENT-like
family: Emsy N terminal (ENT) domain-like
domain: Emsy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.7e-25  Score=181.02  Aligned_cols=75  Identities=28%  Similarity=0.431  Sum_probs=70.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHhCCChHHHHHHHHHhchhHHHHHHHHHhhhcC
Q 017436           47 QNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKASG  122 (371)
Q Consensus        47 ~~~~~~~Ih~LE~eAY~sVLrAF~AQS~~LSWeKE~LLTeLR~eL~IS~eEH~~~l~~v~~De~i~~iRe~r~~gg  122 (371)
                      .++|...||+||++||++||+||+||+ +||||||+|||+||++||||||||+++|+++++|+.|++||++.++..
T Consensus         3 r~e~~~~lR~LEleAY~svl~Af~Aqg-~lsweke~lLt~LR~~L~IS~eeHr~elrr~~~De~l~~I~e~~~G~~   77 (90)
T d1uz3a1           3 RDECKRILRKLELEAYAGVISALRAQG-DLTKEKKDLLGELSKVLSISTERHRAEVRRAVNDERLTTIAHNMSGPN   77 (90)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTCHHHHHHHHHHHCSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhccHHHHHHHHHHhcCCC
Confidence            368999999999999999999999995 599999999999999999999999999999999999999999987653

>d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3, TDRD3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: Tudor domain-containing protein 3, TDRD3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.70  E-value=0.00056  Score=49.17  Aligned_cols=40  Identities=18%  Similarity=0.253  Sum_probs=35.3

Q ss_pred             ccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCCC
Q 017436          229 IGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD  268 (371)
Q Consensus       229 VGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~~  268 (371)
                      ||-.+...|++|+.||.|+|...+++.+...|.|.|-.-.
T Consensus         5 vG~~c~A~~~~D~~wYRA~I~~i~~~~~~~~V~fvDYGn~   44 (60)
T d2d9ta1           5 PGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFTDYGNY   44 (60)
T ss_dssp             TTCEEEEECTTTCCEEEEEEEEECSSSSEEEEEETTTTEE
T ss_pred             cCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEECCCCE
Confidence            6888999999999999999999999888888888876554

>d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: Survival motor neuron protein 1, smn
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.32  E-value=0.0016  Score=46.79  Aligned_cols=48  Identities=27%  Similarity=0.408  Sum_probs=39.3

Q ss_pred             ccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCCCCcceeeeccCC
Q 017436          229 IGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEI  279 (371)
Q Consensus       229 VGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~~EtwEwVdL~e~  279 (371)
                      ||-.+...|.+|+.||.|+|+..+++++.-.|.|.|-.-.|   .|.+++|
T Consensus         6 vG~~C~A~~s~Dg~wYRA~I~~v~~~~~~~~V~fvDYGn~e---~V~~~~l   53 (59)
T d1mhna_           6 VGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNRE---EQNLSDL   53 (59)
T ss_dssp             TTCEEEEECTTTSCEEEEEEEEEETTTTEEEEEETTTTEEE---EEEGGGC
T ss_pred             cCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEeCCCEE---EEEHHHC
Confidence            78899999999999999999999988887888887776653   4555544

>d2diga1 b.34.9.1 (A:8-62) Lamin-b receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: Lamin-b receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.20  E-value=0.0015  Score=47.19  Aligned_cols=40  Identities=25%  Similarity=0.377  Sum_probs=37.7

Q ss_pred             ccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCCC
Q 017436          229 IGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD  268 (371)
Q Consensus       229 VGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~~  268 (371)
                      .|.-|+-+||-.+=|||-.|.+||..+-.+.|.|.||++-
T Consensus         8 ~Ge~vm~RwPgSsLyyev~vls~d~~~~~YtV~ykDGTel   47 (55)
T d2diga1           8 DGEVVRGRWPGSSLYYEVEILSHDSTSQLYTVKYKDGTEL   47 (55)
T ss_dssp             SSCEEEEECTTTCCEEEEEEEEEETTTTEEEEECTTSCEE
T ss_pred             CCcEEEeecCCCceEEEEEEEeecCcceEEEEEecCCcee
Confidence            5778899999999999999999999999999999999985

>d2g3ra1 b.34.9.1 (A:1485-1537) p53-binding protein 1, 53BP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: p53-binding protein 1, 53BP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.63  E-value=0.011  Score=41.70  Aligned_cols=41  Identities=24%  Similarity=0.541  Sum_probs=36.6

Q ss_pred             ccccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCCC
Q 017436          227 PLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD  268 (371)
Q Consensus       227 sLVGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~~  268 (371)
                      ++||-||-..|-.+.-||.|.|+. |..+++..|.||||-+-
T Consensus         1 sfvglrvvakwssn~yfysg~i~r-d~g~~r~rl~fdd~~ec   41 (53)
T d2g3ra1           1 SFVGLRVVAKWSSNGYFYSGKITR-DVGAGKYKLLFDDGYEC   41 (53)
T ss_dssp             CCTTCEEEEECTTTCCEEEEEEEE-EEETTEEEEEETTSCEE
T ss_pred             CceeEEEEEEeecCCEEEeeEEeh-hcCCceEEEEecCCcEE
Confidence            479999999999999999999996 66679999999999764

>d1wgsa_ b.34.13.3 (A:) Probable histone acetyltransferase MYST1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo barrel domain
domain: Probable histone acetyltransferase MYST1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.30  E-value=0.5  Score=38.69  Aligned_cols=51  Identities=24%  Similarity=0.373  Sum_probs=38.9

Q ss_pred             cccceeeeccCCCCCceeeeeee--ccCCCC--ceeeeccCCCCCCcceeeeccCCC
Q 017436          228 LIGRKVWTRWPEDNHFYEAVITD--YNPNEG--RHALVYDINTADETWEWVNLKEIS  280 (371)
Q Consensus       228 LVGrrVkv~WPdDn~fYegvIt~--Yn~~tg--~H~LvYD~g~~~EtwEwVdL~e~s  280 (371)
                      -||-+|.++|+| +.||+|.|.+  ++...+  ++-|.|+.-+..-- |||+...|.
T Consensus        14 ~vG~~~~v~~~d-g~~~~AkVl~~r~~~~~~~~~yyVHY~g~n~r~D-EWV~~~ri~   68 (133)
T d1wgsa_          14 EIGETYLCRRPD-STWHSAEVIQSRVNDQEGREEFYVHYVGFNRRLD-EWVDKNRLA   68 (133)
T ss_dssp             CTTSEEEEEETT-TEEEEEEEEEEEEETTTTEEEEEEECTTTCSSCC-EEECTTTSC
T ss_pred             ecCCEEEEEeCC-CCEeEEEEEEEEecccCCCeEEEEEccCCccccc-eecCHHHcc
Confidence            499999999985 6799999975  444443  56789998888422 799877774

>d2diqa1 b.34.9.1 (A:8-104) Tudor and KH domain-containing protein TDRKH {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: Tudor and KH domain-containing protein TDRKH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.46  E-value=0.19  Score=37.42  Aligned_cols=49  Identities=20%  Similarity=0.235  Sum_probs=34.7

Q ss_pred             ccccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCCCCcceeeeccCC
Q 017436          227 PLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEI  279 (371)
Q Consensus       227 sLVGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~~EtwEwVdL~e~  279 (371)
                      .-+|..+-++|++|+.||.|+|...+.+ +.-.|.|-|-...   +.|++++|
T Consensus        26 ~~~G~~~~a~~~~d~~wyRa~V~~~~~~-~~~~V~~vDyG~~---~~v~~~~l   74 (97)
T d2diqa1          26 VHVGDIVAAPLPTNGSWYRARVLGTLEN-GNLDLYFVDFGDN---GDCPLKDL   74 (97)
T ss_dssp             CCTTCEEEECCTTTCSCEEEEECCCCSS-SCEEEEETTTCCE---EEECGGGC
T ss_pred             CCCCCEEEEEECCCCeEEEEEEEEECCC-CEEEEEEEeeCCE---EEEeHHHh
Confidence            3478889999999999999999998753 5566655554443   34544443

>d2hqxa1 b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: P100 co-activator, SND1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.11  E-value=0.18  Score=37.95  Aligned_cols=54  Identities=17%  Similarity=0.305  Sum_probs=35.1

Q ss_pred             CccccceeeeccCCCCCceeeeeeeccCCCCceeee-ccCCCCCCcceeeeccCCCCc
Q 017436          226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALV-YDINTADETWEWVNLKEISPE  282 (371)
Q Consensus       226 ~sLVGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~Lv-YD~g~~~EtwEwVdL~e~spe  282 (371)
                      ..-+|.-+-+.| .|+.||.|+|.+.+... .-.|. .|.|+.+ +=.+=||+.|.++
T Consensus        25 ~p~~G~~c~a~~-~D~~wyRa~V~~~~~~~-~~~V~~vDyG~~~-~v~~~~l~~l~~~   79 (90)
T d2hqxa1          25 APRRGEFCIAKF-VDGEWYRARVEKVESPA-KIHVFYIDYGNRE-VLPSTRLGTLSPA   79 (90)
T ss_dssp             CCCTTCEEEEEC-TTSCEEEEEEEEEEETT-EEEEEETTTCCEE-EECGGGEECCCGG
T ss_pred             CCCCCCEEEEEE-cCCCEEEEEEEEeCCCC-eEEEEEEeCCCCE-EEEHHHeeECCHH
Confidence            446788899999 48999999999987543 34454 4555554 2123345555543