Citrus Sinensis ID: 017440

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-

MALKAVHVSDVPNLDQVPGNVTLNYLHSPRVCKGVNEDCDETKSGYKFPKFVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEIIEKRVTDITLAEFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVDQSVGFNVELKFDDQLVYTEEELTHALEAILKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVDLVSEITEAVSDFIKNEEEIKEEIVFAEDGKLLVKNKSPILK

cccccEEEccccccccccEEEEEEEEEEcccccccccccccccccccccccEEEEccccccccccccccccccccccHHHHHHHHHHccccEEEEEEEEEccccEEEEccccccccccccEEEcccccccHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHcccccEEEEEEccccccccHHHHHHHHHHHHHHHHHHHcccccEEEEcccHHHHHHHHHHcccccEEEEcccccccccccccccHHHHHHHHHHccccEEEcccccccccHHHHHHHHHcccEEEEEccccccHHHHHHHHHccccEEEEccHHHHHHHHHHHHHcHHHHHHccEEcccccccccccccccc

cccccEEEcccccccccEEEEEEEEEEEEcccccccccccccHcHccccccEEEEEccccccccccccHHHHcccHHHHHHHHHHHHccccEEEEEEEEEccccEEEEEccEEEEcccccEEcccccHccHHHHHHcccccccccccccHHHHcccccccccccccccccccHHHHHHHcccccEEEEEEEccccccccHHHHHHHHHHHHHHHHHHcccccEEEEcccHHHHHHHHHHcccccEEEEEcccccccccHHHcHHHHHHHHHHHcccccccccHHHHHHcHHHHHHHHHcccEEEEEccccccHHHHHHHHHccccEEEEccHHHHHHHHHHHHHHHHHHHHHHcccccccEEEcccccccc

malkavhvsdvpnldqvpgnvtlnylhsprvckgvnedcdetksgykfpkfvvmghrgsgmnmlqSSDQRMKSIKENTILSFNaaarhpldfiefdvqvtrdgcpvifhdnfiftkdegEIIEKRVTDITLAEFlsygpqndpenvgkpmlrktkdgrifewkvekdtplcTLQEAFEKVdqsvgfnvelkfddqlVYTEEELTHALEAILKVVFEHaqgrpimfssfQPDAALLIRKLQstypvffltnggaqtctDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVSygelnnvpeVVYMQRFMGIEGVIVDLVSEITEAVSDFIKNEEEIKEEIVFAEdgkllvknkspilk

malkavhvsdvpnldqvpgNVTLNYLHSPRVCKGVNEDCDETKSGYKFPKFVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDnfiftkdegeIIEKRVTDITLAEFlsygpqndpenvgkpmlrktkdgrifeWKVEKDTPLCTLQEAFEkvdqsvgfNVELKFDDQLVYTEEELTHALEAILKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVDLVSEITEAVSDFIKNEEEIKEeivfaedgkllvknkspilk

************NLDQVPGNVTLNYLHSPRVCKGVNEDCDETKSGYKFPKFVVMGH********************NTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEIIEKRVTDITLAEFLSYG****************KDGRIFEWKVEKDTPLCTLQEAFEKVDQSVGFNVELKFDDQLVYTEEELTHALEAILKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVDLVSEITEAVSDFIKNEEEIKEEIVFAEDGKLL*********

*****VHVSDVPNLDQVPGNVTLNYLHSPRVCKGVNEDCDETKSGYKFPKFVVMGHRGSGMNM**SS*****SIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEIIEKRVTDITLAEFLSYGPQNDPENV***MLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVDQSVGFNVELKFDDQLVYTEEELTHALEAILKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVDLVSEITE**********************************

********SDVPNLDQVPGNVTLNYLHSPRVCKGVNEDCDETKSGYKFPKFVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEIIEKRVTDITLAEFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVDQSVGFNVELKFDDQLVYTEEELTHALEAILKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVDLVSEITEAVSDFIKNEEEIKEEIVFAEDGKLLVKNKSPILK

**LKAVHVSDVPNLDQVPGNVTLNYLHSPRVCKGVNEDCDETKSGYKFPKFVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEIIEKRVTDITLAEFLSYGP******************RIFEWKVEKDTPLCTLQEAFEKVDQSVGFNVELKFDDQLVYTEEELTHALEAILKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVDLVSEITEAVSDFIKNEEEIKEEIVF***GK*LVKNK*****

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		371	2.2.26 [Sep-21-2011]
Q02979		1223	Glycerophosphodiester pho	yes	no	0.768	0.233	0.313	7e-36
Q9C104		1076	Glycerophosphodiester pho	yes	no	0.814	0.280	0.300	2e-31
Q10003		796	Putative glycerophosphoch	yes	no	0.754	0.351	0.319	1e-28
Q74ZH9		1321	Glycerophosphodiester pho	yes	no	0.466	0.130	0.344	3e-26
Q9NPB8		672	Glycerophosphocholine pho	yes	no	0.835	0.461	0.269	7e-26
Q8C0L9		675	Glycerophosphocholine pho	yes	no	0.808	0.444	0.265	1e-25
Q80VJ4		672	Glycerophosphocholine pho	yes	no	0.808	0.446	0.265	2e-25
Q21407		690	Putative glycerophosphoch	no	no	0.854	0.459	0.270	2e-20
P37965		293	Glycerophosphoryl diester	yes	no	0.649	0.822	0.228	2e-08

>sp\|Q02979\|GDE1_YEAST Glycerophosphodiester phosphodiesterase GDE1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GDE1 PE=1 SV=1	Back alignment and function desciption

 Score =  151 bits (382), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 113/360 (31%), Positives = 167/360 (46%), Gaps = 75/360 (20%)

Query: 53   VMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNF 112
            V+GHRG G N    S Q    I ENT+ SF  AA     ++EFDVQ+T+D  PV++HD F
Sbjct: 874  VIGHRGLGKNNPNKSLQ----IGENTVESFIMAASLGASYVEFDVQLTKDNVPVVYHD-F 928

Query: 113  IFTKDEGEIIEKRVTDITLAEFLSY----------GPQNDPENV-GKPMLRKTKDGRIFE 161
            +  +   +I    + ++TL +FL            G  + P +V G     +   GR  +
Sbjct: 929  LVAETGVDI---PMHELTLEQFLDLNNADKEHIQRGAGHSPHHVNGADTALQKYRGRSVD 985

Query: 162  ----------WKVEKDTP-------------------------------------LCTLQ 174
                      W +  + P                                       TL+
Sbjct: 986  DSDVSTLRRAWDLHDNDPNGKSNNAHWSDNRMRLTKTFKKNNFKGNARGHSIASSFVTLK 1045

Query: 175  EAFEKVDQSVGFNVELKF-------DDQLVYTEEELTHALEAILKVVFEHAQGRPIMFSS 227
            E F+K+  +VGFN+E KF       +++L     E+ H ++ +LKVVF++A GR I+FSS
Sbjct: 1046 ELFKKIPANVGFNIECKFPMLDEAEEEELGQIMMEMNHWVDTVLKVVFDNANGRDIIFSS 1105

Query: 228  FQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIF 287
            F PD  +++   Q   P+ FLT GG++   D+R SSL   I+      L GIVS    I 
Sbjct: 1106 FHPDICIMLSLKQPVIPILFLTEGGSEQMADLRASSLQNGIRFAKKWNLLGIVSAAAPIL 1165

Query: 288  KNPGAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVDLVSEITEAVSDFIKNEE 347
            K P  ++ +K   L  V+YG  NN PE   +Q   G++ VIVD V  I   ++   KNE+
Sbjct: 1166 KAPRLVQVVKSNGLVCVTYGVDNNDPENASIQIEAGVDAVIVDSVLAIRRGLTK--KNEK 1223

Glycerophosphocholine glycerophosphodiesterase responsible for the hydrolysis of intracellular glycerophosphocholine into glycerol-phosphate and choline. The choline is used for phosphatidyl-choline synthesis. Required for utilization of glycerophosphocholine as phosphate source.
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)
EC: 3EC: .EC: 1EC: .EC: 4EC: .EC: 4EC: 6

>sp\|Q9C104\|GDE1_SCHPO Glycerophosphodiester phosphodiesterase gde1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gde1 PE=1 SV=1	Back alignment and function description

>sp\|Q10003\|GPC1A_CAEEL Putative glycerophosphocholine phosphodiesterase GPCPD1 homolog T05H10.7 OS=Caenorhabditis elegans GN=T05H10.7 PE=2 SV=1	Back alignment and function description

>sp\|Q74ZH9\|GDE1_ASHGO Glycerophosphodiester phosphodiesterase GDE1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=GDE1 PE=3 SV=2	Back alignment and function description

>sp\|Q9NPB8\|GPCP1_HUMAN Glycerophosphocholine phosphodiesterase GPCPD1 OS=Homo sapiens GN=GPCPD1 PE=1 SV=2	Back alignment and function description

>sp\|Q8C0L9\|GPCP1_MOUSE Glycerophosphocholine phosphodiesterase GPCPD1 OS=Mus musculus GN=Gpcpd1 PE=1 SV=1	Back alignment and function description

>sp\|Q80VJ4\|GPCP1_RAT Glycerophosphocholine phosphodiesterase GPCPD1 OS=Rattus norvegicus GN=Gpcpd1 PE=2 SV=1	Back alignment and function description

>sp\|Q21407\|GPC1B_CAEEL Putative glycerophosphocholine phosphodiesterase GPCPD1 homolog K10B3.6 OS=Caenorhabditis elegans GN=K10B3.6 PE=2 SV=2	Back alignment and function description

>sp\|P37965\|GLPQ_BACSU Glycerophosphoryl diester phosphodiesterase OS=Bacillus subtilis (strain 168) GN=glpQ PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		371
224053531		388	predicted protein [Populus trichocarpa]	0.986	0.943	0.697	1e-149
255547608		388	glycerophosphodiester phosphodiesterase,	0.967	0.925	0.706	1e-146
225451535		382	PREDICTED: glycerophosphodiester phospho	0.973	0.945	0.650	1e-137
224129260		382	predicted protein [Populus trichocarpa]	0.973	0.945	0.642	1e-136
296082305		372	unnamed protein product [Vitis vinifera]	0.924	0.922	0.666	1e-135
224055783		372	predicted protein [Populus trichocarpa]	0.886	0.884	0.651	1e-132
449460535		390	PREDICTED: glycerophosphodiester phospho	0.911	0.866	0.647	1e-130
255543649		383	glycerophosphodiester phosphodiesterase,	0.946	0.916	0.642	1e-130
356561440		381	PREDICTED: glycerophosphodiester phospho	0.911	0.887	0.656	1e-130
356571595		381	PREDICTED: glycerophosphodiester phospho	0.911	0.887	0.656	1e-129

>gi\|224053531\|ref\|XP_002297859.1\| predicted protein [Populus trichocarpa] gi\|222845117\|gb\|EEE82664.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  533 bits (1373), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 256/367 (69%), Positives = 307/367 (83%), Gaps = 1/367 (0%)

Query: 1   MALKAVHVSDVPNLDQVPGNVTLNYLHSPRVCKGVN-EDCDETKSGYKFPKFVVMGHRGS 59
           MALKA HVSDVP LDQV  N  L    S  + + VN E  D+TK G+KF KFVVMGHRGS
Sbjct: 1   MALKAAHVSDVPKLDQVQENAALALCSSRLITQCVNIEGSDDTKRGFKFGKFVVMGHRGS 60

Query: 60  GMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEG 119
           GMNMLQS D+RMKSIKEN+ILSF +A++ PLDFIEFDVQVT+D CPVIFHDNFI T+ +G
Sbjct: 61  GMNMLQSCDRRMKSIKENSILSFISASKLPLDFIEFDVQVTKDDCPVIFHDNFILTEHKG 120

Query: 120 EIIEKRVTDITLAEFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEK 179
           E+IEKRVTD+TL EF SYGPQ++  + GK + +KTKDGRIFEWKVE+D P CTLQE F++
Sbjct: 121 ELIEKRVTDLTLDEFRSYGPQDEGGSEGKSLFKKTKDGRIFEWKVEEDAPFCTLQEVFQR 180

Query: 180 VDQSVGFNVELKFDDQLVYTEEELTHALEAILKVVFEHAQGRPIMFSSFQPDAALLIRKL 239
           VD ++GFNVELKFDD ++Y EEEL H L+ IL+VVFEHA+ RP+MFSSFQPDAALL+RKL
Sbjct: 181 VDDTMGFNVELKFDDNIIYKEEELKHILQVILQVVFEHAKERPVMFSSFQPDAALLMRKL 240

Query: 240 QSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEA 299
           QSTYPVFFLTNGG++  TDVRR+SLDEAIKVC  GGLQGIVSEV+A+F+NPGA+ +IKE+
Sbjct: 241 QSTYPVFFLTNGGSEIYTDVRRNSLDEAIKVCTEGGLQGIVSEVKAVFRNPGAVTRIKES 300

Query: 300 KLCLVSYGELNNVPEVVYMQRFMGIEGVIVDLVSEITEAVSDFIKNEEEIKEEIVFAEDG 359
           KL L++YG+LNNVPEVV+MQ  MGIEGVIVDLV EITEAVS F+ + +  +E  +FAE+G
Sbjct: 301 KLSLITYGQLNNVPEVVHMQHLMGIEGVIVDLVHEITEAVSHFVDSAKHGEESGLFAEEG 360

Query: 360 KLLVKNK 366
           K+ VK K
Sbjct: 361 KIQVKTK 367

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255547608\|ref\|XP_002514861.1\| glycerophosphodiester phosphodiesterase, putative [Ricinus communis] gi\|223545912\|gb\|EEF47415.1\| glycerophosphodiester phosphodiesterase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|225451535\|ref\|XP_002273468.1\| PREDICTED: glycerophosphodiester phosphodiesterase GDE1 [Vitis vinifera] gi\|147820259\|emb\|CAN71478.1\| hypothetical protein VITISV_038621 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224129260\|ref\|XP_002328930.1\| predicted protein [Populus trichocarpa] gi\|222839360\|gb\|EEE77697.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|296082305\|emb\|CBI21310.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224055783\|ref\|XP_002298651.1\| predicted protein [Populus trichocarpa] gi\|222845909\|gb\|EEE83456.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449460535\|ref\|XP_004148001.1\| PREDICTED: glycerophosphodiester phosphodiesterase gde1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|255543649\|ref\|XP_002512887.1\| glycerophosphodiester phosphodiesterase, putative [Ricinus communis] gi\|223547898\|gb\|EEF49390.1\| glycerophosphodiester phosphodiesterase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|356561440\|ref\|XP_003548989.1\| PREDICTED: glycerophosphodiester phosphodiesterase GDE1-like isoform 1 [Glycine max]	Back alignment and taxonomy information

>gi\|356571595\|ref\|XP_003553962.1\| PREDICTED: glycerophosphodiester phosphodiesterase GDE1-like isoform 1 [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		371
TAIR\|locus:2169278		370	GDPD3 "glycerophosphodiester p	0.859	0.862	0.647	1.5e-108
TAIR\|locus:2078603		361	SRG3 "senescence-related gene	0.873	0.897	0.593	3.2e-104
TAIR\|locus:2163031		374	GDPD2 "glycerophosphodiester p	0.878	0.871	0.580	2.3e-103
ASPGD\|ASPL0000060537		1205	AN0137 [Emericella nidulans (t	0.466	0.143	0.405	5e-41
CGD\|CAL0002940		1162	orf19.3936 [Candida albicans (	0.458	0.146	0.398	2.9e-37
UNIPROTKB\|Q5AK84		1162	CaO19.3936 "Putative uncharact	0.458	0.146	0.398	2.9e-37
DICTYBASE\|DDB_G0290085		1560	DDB_G0290085 "Glycerophosphodi	0.447	0.106	0.397	3.2e-37
SGD\|S000006031		1223	GDE1 "Glycerophosphocholine (G	0.455	0.138	0.386	6.7e-37
POMBASE\|SPAPB1E7.05		1076	gde1 "glycerophosphoryl dieste	0.466	0.160	0.359	1.3e-31
DICTYBASE\|DDB_G0273949		970	DDB_G0273949 "Putative glycero	0.452	0.173	0.311	5e-28

TAIR\|locus:2169278 GDPD3 "glycerophosphodiester phosphodiesterase 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1073 (382.8 bits), Expect = 1.5e-108, P = 1.5e-108
 Identities = 208/321 (64%), Positives = 255/321 (79%)

Query:    21 VTLNYLHSPRVCKGVNEDCDETKSGYKFPKFVVMGHRGSGMNMLQSSDQRMKSIKENTIL 80
             +TL+   S  +  GV ED D+ +    FPKFV+MGHRG GMNMLQS D++MK IKEN++L
Sbjct:     6 MTLSLSSSAMLSSGVVED-DKKQEAIVFPKFVLMGHRGFGMNMLQSPDEKMKFIKENSLL 64

Query:    81 SFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEIIEKRVTDITLAEFLSYGPQ 140
             SFN AA  P+DFIEFDVQVTRDGCPVIFHD F+FT+++G IIEKRVT++ L EFLSYGPQ
Sbjct:    65 SFNVAADFPIDFIEFDVQVTRDGCPVIFHDIFMFTQEQGVIIEKRVTEMDLHEFLSYGPQ 124

Query:   141 NDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVDQSVGFNVELKFDDQLVYTE 200
              D  NV KPM RKTKDGRIFEWKVEKD PLCTL++AF  V  S+GFN+ELKFDD  VY E
Sbjct:   125 RDGTNV-KPMWRKTKDGRIFEWKVEKDDPLCTLEDAFLNVKHSLGFNIELKFDDNTVYGE 183

Query:   201 EELTHALEAILKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVR 260
              EL   L+ IL VV EH++ RPI+FSSF PDAA LIR +Q  YPVFFLTNGG +   DVR
Sbjct:   184 GELRQTLDNILTVVNEHSKNRPIIFSSFHPDAARLIRNMQRCYPVFFLTNGGCEIYKDVR 243

Query:   261 RSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVSYGELNNVPEVVYMQR 320
             R+SLDEAIK+C   GLQG+VSEV+AI + P AI ++K++KL L+SYG+LNNV EV+Y+Q 
Sbjct:   244 RNSLDEAIKLCKESGLQGLVSEVKAILRTPNAITRVKDSKLSLLSYGQLNNVVEVIYLQY 303

Query:   321 FMGIEGVIVDLVSEITEAVSD 341
              MG+EGVIVD+V +I+EA+++
Sbjct:   304 LMGVEGVIVDMVKDISEAIAN 324

GO:0005737 "cytoplasm" evidence=ISM

GO:0006071 "glycerol metabolic process" evidence=IEA;ISS

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0008081 "phosphoric diester hydrolase activity" evidence=IEA

GO:0008889 "glycerophosphodiester phosphodiesterase activity" evidence=IEA;ISS

TAIR\|locus:2078603 SRG3 "senescence-related gene 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2163031 GDPD2 "glycerophosphodiester phosphodiesterase 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000060537 AN0137 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

CGD\|CAL0002940 orf19.3936 [Candida albicans (taxid:5476)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5AK84 CaO19.3936 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0290085 DDB_G0290085 "Glycerophosphodiester phosphodiesterase GDE1" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

SGD\|S000006031 GDE1 "Glycerophosphocholine (GroPCho) phosphodiesterase" [Saccharomyces cerevisiae (taxid:4932)]	Back alignment and assigned GO terms

POMBASE\|SPAPB1E7.05 gde1 "glycerophosphoryl diester phosphodiesterase Gde1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0273949 DDB_G0273949 "Putative glycerophosphodiester phosphodiesterase 5" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.4	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00010505	hypothetical protein (388 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		371
cd08605		282	cd08605, GDPD_GDE5_like_1_plant, Glycerophosphodie	1e-133
cd08572		293	cd08572, GDPD_GDE5_like, Glycerophosphodiester pho	1e-109
cd08606		286	cd08606, GDPD_YPL110cp_fungi, Glycerophosphodieste	1e-58
cd08607		290	cd08607, GDPD_GDE5, Glycerophosphodiester phosphod	5e-55
pfam03009		238	pfam03009, GDPD, Glycerophosphoryl diester phospho	1e-42
COG0584		257	COG0584, UgpQ, Glycerophosphoryl diester phosphodi	5e-24
cd08556		189	cd08556, GDPD, Glycerophosphodiester phosphodieste	3e-20
cd08562		229	cd08562, GDPD_EcUgpQ_like, Glycerophosphodiester p	3e-18
cd08563		230	cd08563, GDPD_TtGDE_like, Glycerophosphodiester ph	1e-16
cd08568		226	cd08568, GDPD_TmGDE_like, Glycerophosphodiester ph	3e-15
cd08582		233	cd08582, GDPD_like_2, Glycerophosphodiester phosph	8e-15
cd08575		264	cd08575, GDPD_GDE4_like, Glycerophosphodiester pho	1e-12
cd08566		240	cd08566, GDPD_AtGDE_like, Glycerophosphodiester ph	3e-12
cd08567		263	cd08567, GDPD_SpGDE_like, Glycerophosphodiester ph	1e-11
cd08585		237	cd08585, GDPD_like_3, Glycerophosphodiester phosph	2e-11
cd08579		220	cd08579, GDPD_memb_like, Glycerophosphodiester pho	1e-09
cd08564		265	cd08564, GDPD_GsGDE_like, Glycerophosphodiester ph	2e-09
cd08573		258	cd08573, GDPD_GDE1, Glycerophosphodiester phosphod	2e-09
cd08561		249	cd08561, GDPD_cytoplasmic_ScUgpQ2_like, Glyceropho	3e-09
cd08581		229	cd08581, GDPD_like_1, Glycerophosphodiester phosph	6e-09
cd08565		235	cd08565, GDPD_pAtGDE_like, Glycerophosphodiester p	6e-09
cd08570		234	cd08570, GDPD_YPL206cp_fungi, Glycerophosphodieste	3e-08
cd08578		300	cd08578, GDPD_NUC-2_fungi, Putative glycerophospho	2e-07
cd08559		296	cd08559, GDPD_periplasmic_GlpQ_like, Periplasmic g	6e-07
cd08601		256	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester p	1e-06
cd08612		300	cd08612, GDPD_GDE4, Glycerophosphodiester phosphod	5e-06
PRK09454		249	PRK09454, ugpQ, cytoplasmic glycerophosphodiester	9e-06
cd08580		263	cd08580, GDPD_Rv2277c_like, Glycerophosphodiester	1e-05
cd08574		252	cd08574, GDPD_GDE_2_3_6, Glycerophosphodiester pho	3e-05
cd08613		309	cd08613, GDPD_GDE4_like_1, Glycerophosphodiester p	4e-05
cd08610		316	cd08610, GDPD_GDE6, Glycerophosphodiester phosphod	2e-04
cd08602		309	cd08602, GDPD_ScGlpQ1_like, Glycerophosphodiester	4e-04
cd08600		318	cd08600, GDPD_EcGlpQ_like, Glycerophosphodiester p	4e-04
cd08609		315	cd08609, GDPD_GDE3, Glycerophosphodiester phosphod	4e-04
cd08608		351	cd08608, GDPD_GDE2, Glycerophosphodiester phosphod	0.001
cd08555		179	cd08555, PI-PLCc_GDPD_SF, Catalytic domain of phos	0.003

>gnl\|CDD\|176547 cd08605, GDPD_GDE5_like_1_plant, Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5	Back alignment and domain information

 Score =  381 bits (980), Expect = e-133
 Identities = 141/282 (50%), Positives = 181/282 (64%), Gaps = 1/282 (0%)

Query: 52  VVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDN 111
            V+GHRG GMN           I+ENTI SF AA++   DF+EFDVQVTRDG PVI+HD+
Sbjct: 1   AVIGHRGLGMNRASHQPSVGPGIRENTIASFIAASKFGADFVEFDVQVTRDGVPVIWHDD 60

Query: 112 FIFTKDEGEIIEKRVTDITLAEFLSYGPQNDPENVGKPML-RKTKDGRIFEWKVEKDTPL 170
           FI  +  GE+   R+ D+TLAE  + GPQ +        L RK KD     W ++ +  +
Sbjct: 61  FIVVERGGEVESSRIRDLTLAELKALGPQAESTKTSTVALYRKAKDPEPEPWIMDVEDSI 120

Query: 171 CTLQEAFEKVDQSVGFNVELKFDDQLVYTEEELTHALEAILKVVFEHAQGRPIMFSSFQP 230
            TL+E F +V  S+GFN+ELKF D      EEL   L AIL V  +HA GR IMFSSF P
Sbjct: 121 PTLEEVFSEVPPSLGFNIELKFGDDNKTEAEELVRELRAILAVCKQHAPGRRIMFSSFDP 180

Query: 231 DAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNP 290
           DAA+L+R LQS YPV FLT+ G  T  D RR+S++ AI+V L GGLQGIVSEV+ + +NP
Sbjct: 181 DAAVLLRALQSLYPVMFLTDCGPYTHNDPRRNSIEAAIQVALEGGLQGIVSEVKVLLRNP 240

Query: 291 GAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVDLV 332
            A+  +K + L L +YG+LNN  E V  Q  +G++GVIVD V
Sbjct: 241 TAVSLVKASGLELGTYGKLNNDAEAVERQADLGVDGVIVDHV 282

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized plant glycerophosphodiester phosphodiesterase (GP-PDE)-like proteins. Members in this family show very high sequence homology to mammalian glycerophosphodiester phosphodiesterase GDE5 and are distantly related to plant GP-PDEs. Length = 282

>gnl\|CDD\|176514 cd08572, GDPD_GDE5_like, Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins	Back alignment and domain information

>gnl\|CDD\|176548 cd08606, GDPD_YPL110cp_fungi, Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and similar proteins	Back alignment and domain information

>gnl\|CDD\|176549 cd08607, GDPD_GDE5, Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins	Back alignment and domain information

>gnl\|CDD\|217317 pfam03009, GDPD, Glycerophosphoryl diester phosphodiesterase family	Back alignment and domain information

>gnl\|CDD\|223657 COG0584, UgpQ, Glycerophosphoryl diester phosphodiesterase [Energy production and conversion]	Back alignment and domain information

>gnl\|CDD\|176499 cd08556, GDPD, Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins	Back alignment and domain information

>gnl\|CDD\|176505 cd08562, GDPD_EcUgpQ_like, Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins	Back alignment and domain information

>gnl\|CDD\|176506 cd08563, GDPD_TtGDE_like, Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins	Back alignment and domain information

>gnl\|CDD\|176511 cd08568, GDPD_TmGDE_like, Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins	Back alignment and domain information

>gnl\|CDD\|176524 cd08582, GDPD_like_2, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases	Back alignment and domain information

>gnl\|CDD\|176517 cd08575, GDPD_GDE4_like, Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4-like proteins	Back alignment and domain information

>gnl\|CDD\|176509 cd08566, GDPD_AtGDE_like, Glycerophosphodiester phosphodiesterase domain of Agrobacterium tumefaciens and similar proteins	Back alignment and domain information

>gnl\|CDD\|176510 cd08567, GDPD_SpGDE_like, Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins	Back alignment and domain information

>gnl\|CDD\|176527 cd08585, GDPD_like_3, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases	Back alignment and domain information

>gnl\|CDD\|176521 cd08579, GDPD_memb_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases	Back alignment and domain information

>gnl\|CDD\|176507 cd08564, GDPD_GsGDE_like, Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins	Back alignment and domain information

>gnl\|CDD\|176515 cd08573, GDPD_GDE1, Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins	Back alignment and domain information

>gnl\|CDD\|176504 cd08561, GDPD_cytoplasmic_ScUgpQ2_like, Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins	Back alignment and domain information

>gnl\|CDD\|176523 cd08581, GDPD_like_1, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases	Back alignment and domain information

>gnl\|CDD\|176508 cd08565, GDPD_pAtGDE_like, Glycerophosphodiester phosphodiesterase domain of putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase and similar proteins	Back alignment and domain information

>gnl\|CDD\|176512 cd08570, GDPD_YPL206cp_fungi, Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL206cp and similar proteins	Back alignment and domain information

>gnl\|CDD\|176520 cd08578, GDPD_NUC-2_fungi, Putative glycerophosphodiester phosphodiesterase domain of ankyrin repeat protein NUC-2 and similar proteins	Back alignment and domain information

>gnl\|CDD\|176502 cd08559, GDPD_periplasmic_GlpQ_like, Periplasmic glycerophosphodiester phosphodiesterase domain (GlpQ) and similar proteins	Back alignment and domain information

>gnl\|CDD\|176543 cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	Back alignment and domain information

>gnl\|CDD\|176553 cd08612, GDPD_GDE4, Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins	Back alignment and domain information

>gnl\|CDD\|236524 PRK09454, ugpQ, cytoplasmic glycerophosphodiester phosphodiesterase; Provisional	Back alignment and domain information

>gnl\|CDD\|176522 cd08580, GDPD_Rv2277c_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins	Back alignment and domain information

>gnl\|CDD\|176516 cd08574, GDPD_GDE_2_3_6, Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins	Back alignment and domain information

>gnl\|CDD\|176554 cd08613, GDPD_GDE4_like_1, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial homologs of mammalian glycerophosphodiester phosphodiesterase GDE4	Back alignment and domain information

>gnl\|CDD\|176552 cd08610, GDPD_GDE6, Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE6 and similar proteins	Back alignment and domain information

>gnl\|CDD\|176544 cd08602, GDPD_ScGlpQ1_like, Glycerophosphodiester phosphodiesterase domain of Streptomycin coelicolor (GlpQ1) and similar proteins	Back alignment and domain information

>gnl\|CDD\|176542 cd08600, GDPD_EcGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Escherichia coli (GlpQ) and similar proteins	Back alignment and domain information

>gnl\|CDD\|176551 cd08609, GDPD_GDE3, Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE3 and similar proteins	Back alignment and domain information

>gnl\|CDD\|176550 cd08608, GDPD_GDE2, Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2 and similar proteins	Back alignment and domain information

>gnl\|CDD\|176498 cd08555, PI-PLCc_GDPD_SF, Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		371
cd08605		282	GDPD_GDE5_like_1_plant Glycerophosphodiester phosp	100.0
cd08580		263	GDPD_Rv2277c_like Glycerophosphodiester phosphodie	100.0
cd08601		256	GDPD_SaGlpQ_like Glycerophosphodiester phosphodies	100.0
cd08606		286	GDPD_YPL110cp_fungi Glycerophosphodiester phosphod	100.0
cd08610		316	GDPD_GDE6 Glycerophosphodiester phosphodiesterase	100.0
cd08612		300	GDPD_GDE4 Glycerophosphodiester phosphodiesterase	100.0
PRK09454		249	ugpQ cytoplasmic glycerophosphodiester phosphodies	100.0
cd08568		226	GDPD_TmGDE_like Glycerophosphodiester phosphodiest	100.0
cd08609		315	GDPD_GDE3 Glycerophosphodiester phosphodiesterase	100.0
cd08564		265	GDPD_GsGDE_like Glycerophosphodiester phosphodiest	100.0
cd08572		293	GDPD_GDE5_like Glycerophosphodiester phosphodieste	100.0
cd08562		229	GDPD_EcUgpQ_like Glycerophosphodiester phosphodies	100.0
cd08565		235	GDPD_pAtGDE_like Glycerophosphodiester phosphodies	100.0
cd08581		229	GDPD_like_1 Glycerophosphodiester phosphodiesteras	100.0
cd08607		290	GDPD_GDE5 Glycerophosphodiester phosphodiesterase	100.0
cd08574		252	GDPD_GDE_2_3_6 Glycerophosphodiester phosphodieste	100.0
cd08563		230	GDPD_TtGDE_like Glycerophosphodiester phosphodiest	100.0
cd08559		296	GDPD_periplasmic_GlpQ_like Periplasmic glycerophos	100.0
cd08582		233	GDPD_like_2 Glycerophosphodiester phosphodiesteras	100.0
cd08608		351	GDPD_GDE2 Glycerophosphodiester phosphodiesterase	100.0
cd08575		264	GDPD_GDE4_like Glycerophosphodiester phosphodieste	100.0
cd08579		220	GDPD_memb_like Glycerophosphodiester phosphodieste	100.0
cd08567		263	GDPD_SpGDE_like Glycerophosphodiester phosphodiest	100.0
cd08573		258	GDPD_GDE1 Glycerophosphodiester phosphodiesterase	100.0
cd08600		318	GDPD_EcGlpQ_like Glycerophosphodiester phosphodies	100.0
cd08604		300	GDPD_SHV3_repeat_2 Glycerophosphodiester phosphodi	100.0
cd08561		249	GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodieste	100.0
cd08571		302	GDPD_SHV3_plant Glycerophosphodiester phosphodiest	100.0
PRK11143		355	glpQ glycerophosphodiester phosphodiesterase; Prov	100.0
cd08566		240	GDPD_AtGDE_like Glycerophosphodiester phosphodiest	100.0
cd08560		356	GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodi	100.0
cd08570		234	GDPD_YPL206cp_fungi Glycerophosphodiester phosphod	100.0
cd08602		309	GDPD_ScGlpQ1_like Glycerophosphodiester phosphodie	100.0
cd08583		237	PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetic	100.0
cd08585		237	GDPD_like_3 Glycerophosphodiester phosphodiesteras	100.0
cd08613		309	GDPD_GDE4_like_1 Glycerophosphodiester phosphodies	100.0
PF03009		256	GDPD: Glycerophosphoryl diester phosphodiesterase	100.0
COG0584		257	UgpQ Glycerophosphoryl diester phosphodiesterase [	100.0
cd08603		299	GDPD_SHV3_repeat_1 Glycerophosphodiester phosphodi	100.0
cd08556		189	GDPD Glycerophosphodiester phosphodiesterase domai	100.0
cd08578		300	GDPD_NUC-2_fungi Putative glycerophosphodiester ph	100.0
cd08555		179	PI-PLCc_GDPD_SF Catalytic domain of phosphoinositi	100.0
cd08584		192	PI-PLCc_GDPD_SF_unchar2 Uncharacterized hypothetic	99.91
KOG2258		341	consensus Glycerophosphoryl diester phosphodiester	99.81
cd08577		228	PI-PLCc_GDPD_SF_unchar3 Uncharacterized hypothetic	99.6
cd08576		265	GDPD_like_SMaseD_PLD Glycerophosphodiester phospho	99.51
KOG2421		417	consensus Predicted starch-binding protein [Genera	98.92
cd08592		229	PI-PLCc_gamma Catalytic domain of metazoan phospho	98.54
PF13653		30	GDPD_2: Glycerophosphoryl diester phosphodiesteras	98.5
cd08627		229	PI-PLCc_gamma1 Catalytic domain of metazoan phosph	98.42
KOG2421		417	consensus Predicted starch-binding protein [Genera	98.24
cd08597		260	PI-PLCc_PRIP_metazoa Catalytic domain of metazoan	97.93
smart00148		135	PLCXc Phospholipase C, catalytic domain (part); do	97.52
PF10223		244	DUF2181: Uncharacterized conserved protein (DUF218	97.16
cd08594		227	PI-PLCc_eta Catalytic domain of metazoan phosphoin	97.05
cd08595		257	PI-PLCc_zeta Catalytic domain of metazoan phosphoi	96.85
cd08599		228	PI-PLCc_plant Catalytic domain of plant phosphatid	96.83
cd08632		253	PI-PLCc_eta1 Catalytic domain of metazoan phosphoi	96.83
cd08631		258	PI-PLCc_delta4 Catalytic domain of metazoan phosph	96.82
cd08633		254	PI-PLCc_eta2 Catalytic domain of metazoan phosphoi	96.82
cd08558		226	PI-PLCc_eukaryota Catalytic domain of eukaryotic p	96.81
cd08630		258	PI-PLCc_delta3 Catalytic domain of metazoan phosph	96.8
cd08628		254	PI-PLCc_gamma2 Catalytic domain of metazoan phosph	96.78
cd08596		254	PI-PLCc_epsilon Catalytic domain of metazoan phosp	96.76
cd08629		258	PI-PLCc_delta1 Catalytic domain of metazoan phosph	96.71
cd08593		257	PI-PLCc_delta Catalytic domain of metazoan phospho	96.68
cd08598		231	PI-PLC1c_yeast Catalytic domain of putative yeast	96.67
cd08626		257	PI-PLCc_beta4 Catalytic domain of metazoan phospho	96.64
cd08623		258	PI-PLCc_beta1 Catalytic domain of metazoan phospho	96.5
cd08624		261	PI-PLCc_beta2 Catalytic domain of metazoan phospho	96.48
cd08591		257	PI-PLCc_beta Catalytic domain of metazoan phosphoi	96.37
cd08625		258	PI-PLCc_beta3 Catalytic domain of metazoan phospho	96.18
KOG1264		1267	consensus Phospholipase C [Lipid transport and met	95.54
PLN02230		598	phosphoinositide phospholipase C 4	94.52
PF00388		146	PI-PLC-X: Phosphatidylinositol-specific phospholip	93.68
KOG0169		746	consensus Phosphoinositide-specific phospholipase	93.68
PLN02228		567	Phosphoinositide phospholipase C	93.54
PLN02952		599	phosphoinositide phospholipase C	92.77
PF10566		273	Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro:	92.26
PLN02223		537	phosphoinositide phospholipase C	92.05
PLN02222		581	phosphoinositide phospholipase C 2	91.49
cd04724		242	Tryptophan_synthase_alpha Ttryptophan synthase (TR	91.37
cd00137		274	PI-PLCc Catalytic domain of prokaryotic and eukary	91.3
PRK13111		258	trpA tryptophan synthase subunit alpha; Provisiona	91.18
cd08589		324	PI-PLCc_SaPLC1_like Catalytic domain of Streptomyc	90.9
PLN02591		250	tryptophan synthase	89.56
PRK01130		221	N-acetylmannosamine-6-phosphate 2-epimerase; Provi	88.89
COG0159		265	TrpA Tryptophan synthase alpha chain [Amino acid t	88.2
PF00290		259	Trp_syntA: Tryptophan synthase alpha chain; InterP	87.41
CHL00200		263	trpA tryptophan synthase alpha subunit; Provisiona	87.08
PF04309		175	G3P_antiterm: Glycerol-3-phosphate responsive anti	86.9
PLN02591		250	tryptophan synthase	86.53
cd04726		202	KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl	85.45
PRK13111		258	trpA tryptophan synthase subunit alpha; Provisiona	84.28
COG0134		254	TrpC Indole-3-glycerol phosphate synthase [Amino a	83.77
cd04743		320	NPD_PKS 2-Nitropropane dioxygenase (NPD)-like doma	82.29
PF04309		175	G3P_antiterm: Glycerol-3-phosphate responsive anti	82.01
PRK05718		212	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	81.33
KOG1265		1189	consensus Phospholipase C [Lipid transport and met	80.45
cd02812		219	PcrB_like PcrB_like proteins. One member of this f	80.09

>cd08605 GDPD_GDE5_like_1_plant Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5	Back alignment and domain information

Probab=100.00  E-value=1.6e-51  Score=388.84  Aligned_cols=274  Identities=49%  Similarity=0.755  Sum_probs=211.0

Q ss_pred             EEecCCCCCCccCCchhhhcccccchHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCCCcccccCCccccccccccCHH
Q 017440           53 VMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEIIEKRVTDITLA  132 (371)
Q Consensus        53 iiAHRG~~~~~~~~~~~~~~~~PENTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~L~r~t~g~~~~~~i~~~T~~  132 (371)
                      +|||||++.+.++...-.-..+||||++||++|++.|||+||+|||+||||++||+||.+++|+++|...++.|.++|++
T Consensus         2 ~ighrg~~~~~~~~~~~~~~~~~ENTl~Af~~A~~~Gad~vE~DV~lTkDg~~VV~HD~~l~r~~~g~~~~~~V~dlT~~   81 (282)
T cd08605           2 VIGHRGLGMNRASHQPSVGPGIRENTIASFIAASKFGADFVEFDVQVTRDGVPVIWHDDFIVVERGGEVESSRIRDLTLA   81 (282)
T ss_pred             eEeccCCCcCcccccccccCCCCCcHHHHHHHHHHcCCCEEEEEEEECcCCeEEEECCCceecccCCCcCccchhhCcHH
Confidence            79999998754331000012578999999999999999999999999999999999999999999873223899999999


Q ss_pred             HHhccCCCCCCCCcCCc-----cccccCCCccccccccCCCCccCHHHHHHhcCCCceEEEEeccCCcccchhHHHHHHH
Q 017440          133 EFLSYGPQNDPENVGKP-----MLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVDQSVGFNVELKFDDQLVYTEEELTHAL  207 (371)
Q Consensus       133 eL~~l~~~~~~g~~~~~-----~~~~~~~g~~~~~~~~~~~~iptL~evL~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~  207 (371)
                      ||++++    +|.++..     .+.........++....+++||||+|+|+.++.++.++||||.+.........+..++
T Consensus        82 EL~~ld----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPtL~evl~~~~~~~~l~IEiK~~~~~~~~~~~~~~~~  157 (282)
T cd08605          82 ELKALG----PQAESTKTSTVALYRKAKDPEPEPWIMDVEDSIPTLEEVFSEVPPSLGFNIELKFGDDNKTEAEELVREL  157 (282)
T ss_pred             HHHhcc----ccccccccCcchhhccccccccccccccccCCCCCHHHHHHhCCCCccEEEEEecCccccchHHHHHHHH
Confidence            999994    4543310     0000000000111122468999999999999878899999998653222223344557


Q ss_pred             HHHHHHHHHhcCCCCeEEecCCHHHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEeccccccc
Q 017440          208 EAILKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIF  287 (371)
Q Consensus       208 ~~vl~~l~~~~~~~~v~i~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  287 (371)
                      +.++++++++++.++++|+||++++|+.++++.|.+++++++......+.+.+..++..+..++...++.++++++..+.
T Consensus       158 ~~v~~~i~~~~~~~~viisSF~~~~l~~l~~~~p~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  237 (282)
T cd08605         158 RAILAVCKQHAPGRRIMFSSFDPDAAVLLRALQSLYPVMFLTDCGPYTHNDPRRNSIEAAIQVALEGGLQGIVSEVKVLL  237 (282)
T ss_pred             HHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhcCccCCEEEEecCCCccccCchhhhHHHHHHHHHHcCCceEEecHHHhh
Confidence            88999999999889999999999999999999999999999864321222333334556677888899999998876545


Q ss_pred             CChHHHHHHHHhCCeEEEeccc--CChHHHHHHHHhcCceEEEeCCh
Q 017440          288 KNPGAIKKIKEAKLCLVSYGEL--NNVPEVVYMQRFMGIEGVIVDLV  332 (371)
Q Consensus       288 ~~~~~v~~~~~~Gl~v~~wgtv--n~~~~~~~l~~~~GVdgIiTD~p  332 (371)
                      .++++++.+|++|+.|++| |+  |++++|.+++ ++||||||||++
T Consensus       238 ~~~~~v~~~~~~Gl~v~vW-Tv~~n~~~~~~~l~-~~GVdgIiTD~~  282 (282)
T cd08605         238 RNPTAVSLVKASGLELGTY-GKLNNDAEAVERQA-DLGVDGVIVDHV  282 (282)
T ss_pred             cCcHHHHHHHHcCcEEEEe-CCCCCCHHHHHHHH-HcCCCEEEeCCC
Confidence            7999999999999999999 88  9999999986 799999999986

>cd08580 GDPD_Rv2277c_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins	Back alignment and domain information

>cd08601 GDPD_SaGlpQ_like Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	Back alignment and domain information

>cd08606 GDPD_YPL110cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and similar proteins	Back alignment and domain information

>cd08610 GDPD_GDE6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE6 and similar proteins	Back alignment and domain information

>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins	Back alignment and domain information

>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional	Back alignment and domain information

>cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins	Back alignment and domain information

>cd08609 GDPD_GDE3 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE3 and similar proteins	Back alignment and domain information

>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins	Back alignment and domain information

>cd08572 GDPD_GDE5_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins	Back alignment and domain information

>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins	Back alignment and domain information

>cd08565 GDPD_pAtGDE_like Glycerophosphodiester phosphodiesterase domain of putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase and similar proteins	Back alignment and domain information

>cd08581 GDPD_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases	Back alignment and domain information

>cd08607 GDPD_GDE5 Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins	Back alignment and domain information

>cd08574 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins	Back alignment and domain information

>cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins	Back alignment and domain information

>cd08559 GDPD_periplasmic_GlpQ_like Periplasmic glycerophosphodiester phosphodiesterase domain (GlpQ) and similar proteins	Back alignment and domain information

>cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases	Back alignment and domain information

>cd08608 GDPD_GDE2 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2 and similar proteins	Back alignment and domain information

>cd08575 GDPD_GDE4_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4-like proteins	Back alignment and domain information

>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases	Back alignment and domain information

>cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins	Back alignment and domain information

>cd08573 GDPD_GDE1 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins	Back alignment and domain information

>cd08600 GDPD_EcGlpQ_like Glycerophosphodiester phosphodiesterase domain of Escherichia coli (GlpQ) and similar proteins	Back alignment and domain information

>cd08604 GDPD_SHV3_repeat_2 Glycerophosphodiester phosphodiesterase domain repeat 2 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins	Back alignment and domain information

>cd08561 GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins	Back alignment and domain information

>cd08571 GDPD_SHV3_plant Glycerophosphodiester phosphodiesterase domain of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins	Back alignment and domain information

>PRK11143 glpQ glycerophosphodiester phosphodiesterase; Provisional	Back alignment and domain information

>cd08566 GDPD_AtGDE_like Glycerophosphodiester phosphodiesterase domain of Agrobacterium tumefaciens and similar proteins	Back alignment and domain information

>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins	Back alignment and domain information

>cd08570 GDPD_YPL206cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL206cp and similar proteins	Back alignment and domain information

>cd08602 GDPD_ScGlpQ1_like Glycerophosphodiester phosphodiesterase domain of Streptomycin coelicolor (GlpQ1) and similar proteins	Back alignment and domain information

>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases	Back alignment and domain information

>cd08585 GDPD_like_3 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases	Back alignment and domain information

>cd08613 GDPD_GDE4_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial homologs of mammalian glycerophosphodiester phosphodiesterase GDE4	Back alignment and domain information

>PF03009 GDPD: Glycerophosphoryl diester phosphodiesterase family; InterPro: IPR004129 Glycerophosphoryl diester phosphodiesterases display broad specificity for glycerophosphodiesters; glycerophosphocholine, glycerophosphoethanolamine, glycerophosphoglycerol, and bis(glycerophosphoglycerol) all of which are are hydrolysed by this enzyme	Back alignment and domain information

>COG0584 UgpQ Glycerophosphoryl diester phosphodiesterase [Energy production and conversion]	Back alignment and domain information

>cd08603 GDPD_SHV3_repeat_1 Glycerophosphodiester phosphodiesterase domain repeat 1 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins	Back alignment and domain information

>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins	Back alignment and domain information

>cd08578 GDPD_NUC-2_fungi Putative glycerophosphodiester phosphodiesterase domain of ankyrin repeat protein NUC-2 and similar proteins	Back alignment and domain information

>cd08555 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily	Back alignment and domain information

>cd08584 PI-PLCc_GDPD_SF_unchar2 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases	Back alignment and domain information

>KOG2258 consensus Glycerophosphoryl diester phosphodiesterase [Energy production and conversion]	Back alignment and domain information

>cd08577 PI-PLCc_GDPD_SF_unchar3 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases	Back alignment and domain information

>cd08576 GDPD_like_SMaseD_PLD Glycerophosphodiester phosphodiesterase-like domain of spider venom sphingomyelinases D, bacterial phospholipase D, and similar proteins	Back alignment and domain information

>KOG2421 consensus Predicted starch-binding protein [General function prediction only]	Back alignment and domain information

>cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma	Back alignment and domain information

>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A	Back alignment and domain information

>cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1	Back alignment and domain information

>KOG2421 consensus Predicted starch-binding protein [General function prediction only]	Back alignment and domain information

>cd08597 PI-PLCc_PRIP_metazoa Catalytic domain of metazoan phospholipase C related, but catalytically inactive protein	Back alignment and domain information

>smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X	Back alignment and domain information

>PF10223 DUF2181: Uncharacterized conserved protein (DUF2181); InterPro: IPR019356 This is region of approximately 250 residues with no known function	Back alignment and domain information

>cd08594 PI-PLCc_eta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta	Back alignment and domain information

>cd08595 PI-PLCc_zeta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-zeta	Back alignment and domain information

>cd08599 PI-PLCc_plant Catalytic domain of plant phosphatidylinositide-specific phospholipases C	Back alignment and domain information

>cd08632 PI-PLCc_eta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta1	Back alignment and domain information

>cd08631 PI-PLCc_delta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta4	Back alignment and domain information

>cd08633 PI-PLCc_eta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta2	Back alignment and domain information

>cd08558 PI-PLCc_eukaryota Catalytic domain of eukaryotic phosphoinositide-specific phospholipase C and similar proteins	Back alignment and domain information

>cd08630 PI-PLCc_delta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta3	Back alignment and domain information

>cd08628 PI-PLCc_gamma2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma2	Back alignment and domain information

>cd08596 PI-PLCc_epsilon Catalytic domain of metazoan phosphoinositide-specific phospholipase C-epsilon	Back alignment and domain information

>cd08629 PI-PLCc_delta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta1	Back alignment and domain information

>cd08593 PI-PLCc_delta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta	Back alignment and domain information

>cd08598 PI-PLC1c_yeast Catalytic domain of putative yeast phosphatidylinositide-specific phospholipases C	Back alignment and domain information

>cd08626 PI-PLCc_beta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta4	Back alignment and domain information

>cd08623 PI-PLCc_beta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta1	Back alignment and domain information

>cd08624 PI-PLCc_beta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta2	Back alignment and domain information

>cd08591 PI-PLCc_beta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta	Back alignment and domain information

>cd08625 PI-PLCc_beta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta3	Back alignment and domain information

>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]	Back alignment and domain information

>PLN02230 phosphoinositide phospholipase C 4	Back alignment and domain information

>PF00388 PI-PLC-X: Phosphatidylinositol-specific phospholipase C, X domain This entry is for the whole phospholipase C protein; InterPro: IPR000909 Phosphatidylinositol-specific phospholipase C (3	Back alignment and domain information

>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]	Back alignment and domain information

>PLN02228 Phosphoinositide phospholipase C	Back alignment and domain information

>PLN02952 phosphoinositide phospholipase C	Back alignment and domain information

>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3	Back alignment and domain information

>PLN02223 phosphoinositide phospholipase C	Back alignment and domain information

>PLN02222 phosphoinositide phospholipase C 2	Back alignment and domain information

>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA)	Back alignment and domain information

>cd00137 PI-PLCc Catalytic domain of prokaryotic and eukaryotic phosphoinositide-specific phospholipase C	Back alignment and domain information

>PRK13111 trpA tryptophan synthase subunit alpha; Provisional	Back alignment and domain information

>cd08589 PI-PLCc_SaPLC1_like Catalytic domain of Streptomyces antibioticus phosphatidylinositol-specific phospholipase C1-like proteins	Back alignment and domain information

>PLN02591 tryptophan synthase	Back alignment and domain information

>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional	Back alignment and domain information

>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]	Back alignment and domain information

>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4	Back alignment and domain information

>CHL00200 trpA tryptophan synthase alpha subunit; Provisional	Back alignment and domain information

>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family	Back alignment and domain information

>PLN02591 tryptophan synthase	Back alignment and domain information

>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS)	Back alignment and domain information

>PRK13111 trpA tryptophan synthase subunit alpha; Provisional	Back alignment and domain information

>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]	Back alignment and domain information

>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS)	Back alignment and domain information

>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family	Back alignment and domain information

>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional	Back alignment and domain information

>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]	Back alignment and domain information

>cd02812 PcrB_like PcrB_like proteins	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		371
3qvq_A		252	The Structure Of An Oleispira Antarctica Phosphodie		1e-08
2pz0_A		252	Crystal Structure Of Glycerophosphodiester Phosphod		7e-05
1o1z_A		234	Crystal Structure Of Glycerophosphodiester Phosphod		1e-04
3i10_A		278	Crystal Structure Of Putative Glycerophosphoryl Die		2e-04

>pdb|3QVQ|A Chain A, The Structure Of An Oleispira Antarctica Phosphodiesterase Olei02445 In Complex With The Product Sn-Glycerol-3-Phosphate Length = 252

Back alignment and structure

Iteration: 1

Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 55/188 (29%), Positives = 85/188 (45%), Gaps = 41/188 (21%) Query: 43 KSGYKF-PKFVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTR 101 +S Y F P+ V+ HRGS ENT+ S + A + + ++E DV ++ Sbjct: 3 QSAYSFLPQ--VIAHRGSSGQA-----------PENTLASLHLAGQQGIKWVEIDVXLSG 49 Query: 102 DGCPVIFHDNFIFTKDEGEIIEKRVTDITLAEFLSYGPQNDPENVGKPMLRKTKDGRIFE 161 DG PVIFHD+++ +G+ + + LAE K D ++ Sbjct: 50 DGIPVIFHDDYLSRTTDGDGL---IYKTPLAEL------------------KQLDAGSWK 88 Query: 162 WKVEKDTPLCTLQEAFEKVDQ-SVGFNVELKFDDQLVYTEEELTHALEAILKVVFEHAQG 220 + + + TL EA E + Q G N+ELK + L EEE A +LK + Q Sbjct: 89 GQEYQQETIPTLLEAIEVISQYGXGLNLELKPCEGL---EEETIAASVEVLKQHW--PQD 143 Query: 221 RPIMFSSF 228 P++FSSF Sbjct: 144 LPLLFSSF 151

PyMOL of 3qvq

>pdb|2PZ0|A Chain A, Crystal Structure Of Glycerophosphodiester Phosphodiesterase (Gdpd) From T. Tengcongensis Length = 252

Back alignment and structure

>pdb|1O1Z|A Chain A, Crystal Structure Of Glycerophosphodiester Phosphodiesterase (Gdpd) (Tm1621) From Thermotoga Maritima At 1.60 A Resolution Length = 234

Back alignment and structure

>pdb|3I10|A Chain A, Crystal Structure Of Putative Glycerophosphoryl Diester Phosphodiesterase (Np_812074.1) From Bacteroides Thetaiotaomicron Vpi-5482 At 1.35 A Resolution Length = 278

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		371
3l12_A		313	Putative glycerophosphoryl diester phosphodiester;	3e-29
2pz0_A		252	Glycerophosphoryl diester phosphodiesterase; glyce	2e-27
2oog_A		287	Glycerophosphoryl diester phosphodiesterase; phosp	2e-27
2o55_A		258	Putative glycerophosphodiester phosphodiesterase;	2e-26
3qvq_A		252	Phosphodiesterase OLEI02445; structural genomics,	3e-26
2otd_A		247	Glycerophosphodiester phosphodiesterase; structura	4e-26
1zcc_A		248	Glycerophosphodiester phosphodiesterase; NYSGXRC,	7e-26
3ks6_A		250	Glycerophosphoryl diester phosphodiesterase; struc	2e-25
3no3_A		238	Glycerophosphodiester phosphodiesterase; structura	3e-25
3mz2_A		292	Glycerophosphoryl diester phosphodiesterase; struc	9e-24
3ch0_A		272	Glycerophosphodiester phosphodiesterase; YP_677622	7e-23
1o1z_A		234	GDPD, glycerophosphodiester phosphodiesterase; TM1	8e-23
1ydy_A		356	Glycerophosphoryl diester phosphodiesterase; struc	7e-22
1vd6_A		224	Glycerophosphoryl diester phosphodiesterase; glyce	1e-21
3i10_A		278	Putative glycerophosphoryl diester phosphodiester;	6e-20
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
3rlg_A		302	Sphingomyelin phosphodiesterase D lisictox-alphai;	3e-04

>3l12_A Putative glycerophosphoryl diester phosphodiester; struct genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.60A {Silicibacter pomeroyi} Length = 313	Back alignment and structure

 Score =  114 bits (286), Expect = 3e-29
 Identities = 58/305 (19%), Positives = 108/305 (35%), Gaps = 47/305 (15%)

Query: 49  PKFVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIF 108
               V+GHRG+   M            ENT+  F       +  +EFDV +T DG PV+ 
Sbjct: 16  SVVRVIGHRGARGVMP-----------ENTLEGFAFTLAAGVRALEFDVVMTADGVPVVT 64

Query: 109 HDNFI----FTKDEGEII---EKRVTDITLAEFLSYGPQNDPENVGKPMLRKTKDGRIFE 161
           H++ +        +G  +   E++V ++T AE  +        +VG    R     R  +
Sbjct: 65  HNHHLANAMTRDGQGHWLTGAERQVAEMTYAEIRAL-------DVGGLDGRTVYGRRFPD 117

Query: 162 WKVEKDTPLCTLQEAFEKV----DQSVGFNVELKFDDQLVYTEEELTHALEAILKVVFEH 217
                   +  L E  +      DQ+    +ELK D  L++        + A+L  V  +
Sbjct: 118 QAFLTGIHVPRLGELLDLCAGYGDQAPYLLLELKSDPALMHDHAARAEMVAAVLADVRRY 177

Query: 218 AQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSS----------LDEA 267
                 +  SF        R+     P  +L+            S+           +  
Sbjct: 178 RMEPRTVMHSFDWALLGECRRQAPDLPTSYLSQLPENADDPGEDSAKPVGPDYDRMTESL 237

Query: 268 IKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVSYGELNNVPEVVYMQRF--MGIE 325
            +   + G Q        +   P  + +  +  L ++++     V E   ++R    G++
Sbjct: 238 PQAVASAGGQLWCPYFLDV--TPELVAEAHDLGLIVLTW----TVNEPEDIRRMATTGVD 291

Query: 326 GVIVD 330
           G++ D
Sbjct: 292 GIVTD 296

PyMOL of 3l12

>2pz0_A Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase, T. tengcongensis; 1.91A {Thermoanaerobacter tengcongensis} Length = 252	Back alignment and structure

>2oog_A Glycerophosphoryl diester phosphodiesterase; phosphatase, ST genomics, protein structure initiative, PSI; 2.20A {Staphylococcus aureus subsp} PDB: 2p76_A Length = 287	Back alignment and structure

>2o55_A Putative glycerophosphodiester phosphodiesterase; beta barrel, structural genomics, protein structure initiati 2; 2.81A {Galdieria sulphuraria} Length = 258	Back alignment and structure

>3qvq_A Phosphodiesterase OLEI02445; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase, hydrolase; HET: MSE G3P; 1.60A {Oleispira antarctica} Length = 252	Back alignment and structure

>2otd_A Glycerophosphodiester phosphodiesterase; structural genomics PSI-2, protein structure initiative, midwest center for STR genomics, hydrolase; 2.60A {Shigella flexneri} Length = 247	Back alignment and structure

>1zcc_A Glycerophosphodiester phosphodiesterase; NYSGXRC, agrobacterium tumefaciens STR. C58, structural genomics; 2.50A {Agrobacterium tumefaciens str} SCOP: c.1.18.3 Length = 248	Back alignment and structure

>3ks6_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Agrobacterium tumefaciens str} PDB: 3ks5_A* Length = 250	Back alignment and structure

>3no3_A Glycerophosphodiester phosphodiesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.89A {Parabacteroides distasonis} Length = 238	Back alignment and structure

>3mz2_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics; HET: MSE PE4; 1.55A {Parabacteroides distasonis} Length = 292	Back alignment and structure

>3ch0_A Glycerophosphodiester phosphodiesterase; YP_677622.1, glycerophosphoryl diester phosphodiesterase, ST genomics; HET: MSE CIT GOL; 1.50A {Cytophaga hutchinsonii atcc 33406} Length = 272	Back alignment and structure

>1o1z_A GDPD, glycerophosphodiester phosphodiesterase; TM1621, glycerophosphodiester phosphodiesterase (GDPD), STRU genomics, JCSG, PSI; 1.60A {Thermotoga maritima} SCOP: c.1.18.3 Length = 234	Back alignment and structure

>1ydy_A Glycerophosphoryl diester phosphodiesterase; structural genomics, PSI, protein structu initiative; 1.70A {Escherichia coli} SCOP: c.1.18.3 PDB: 1t8q_A Length = 356	Back alignment and structure

>1vd6_A Glycerophosphoryl diester phosphodiesterase; glycerophosphod phosphodiesterase, HB8; 1.30A {Thermus thermophilus} SCOP: c.1.18.3 PDB: 1v8e_A Length = 224	Back alignment and structure

>3i10_A Putative glycerophosphoryl diester phosphodiester; NP_812074.1; HET: MSE; 1.35A {Bacteroides thetaiotaomicron vpi-5482} Length = 278	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3rlg_A Sphingomyelin phosphodiesterase D lisictox-alphai; TIM beta/alpha-barrel, PLC-like phosphodiesterase, inactive H12A phospholipase D; HET: PGE; 1.60A {Loxosceles intermedia} PDB: 3rlh_A* Length = 302	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		371
2pz0_A		252	Glycerophosphoryl diester phosphodiesterase; glyce	100.0
3qvq_A		252	Phosphodiesterase OLEI02445; structural genomics,	100.0
3ks6_A		250	Glycerophosphoryl diester phosphodiesterase; struc	100.0
2otd_A		247	Glycerophosphodiester phosphodiesterase; structura	100.0
2oog_A		287	Glycerophosphoryl diester phosphodiesterase; phosp	100.0
3l12_A		313	Putative glycerophosphoryl diester phosphodiester;	100.0
2o55_A		258	Putative glycerophosphodiester phosphodiesterase;	100.0
3ch0_A		272	Glycerophosphodiester phosphodiesterase; YP_677622	100.0
3no3_A		238	Glycerophosphodiester phosphodiesterase; structura	100.0
1zcc_A		248	Glycerophosphodiester phosphodiesterase; NYSGXRC,	100.0
1o1z_A		234	GDPD, glycerophosphodiester phosphodiesterase; TM1	100.0
3mz2_A		292	Glycerophosphoryl diester phosphodiesterase; struc	100.0
1ydy_A		356	Glycerophosphoryl diester phosphodiesterase; struc	100.0
1vd6_A		224	Glycerophosphoryl diester phosphodiesterase; glyce	100.0
3i10_A		278	Putative glycerophosphoryl diester phosphodiester;	100.0
1xx1_A		285	Smase I, sphingomyelinase I; structure, quick cryo	100.0
3rlg_A		302	Sphingomyelin phosphodiesterase D lisictox-alphai;	99.91
1djx_A		624	PLC-D1, phosphoinositide-specific phospholipase C,	95.84
2zkm_X		799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	95.51
3qr0_A		816	Phospholipase C-beta (PLC-beta); PH domain, EF han	95.12
3ohm_B		885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	94.33
3h4x_A		339	Phosphatidylinositol-specific phospholipase C1; PI	92.86
3f4w_A		211	Putative hexulose 6 phosphate synthase; humps, mal	90.86
3kts_A		192	Glycerol uptake operon antiterminator regulatory;	89.07
3nav_A		271	Tryptophan synthase alpha chain; alpha subunit, st	87.34
3q58_A		229	N-acetylmannosamine-6-phosphate 2-epimerase; TIM b	87.15
2p10_A		286	MLL9387 protein; putative phosphonopyruvate hydrol	86.43
2d73_A		738	Alpha-glucosidase SUSB; glycoside hydrolase family	86.34
2rbg_A		126	Putative uncharacterized protein ST0493; hypotheti	85.72
3a24_A		641	Alpha-galactosidase; glycoside hydrolase family 97	85.13
3vnd_A		267	TSA, tryptophan synthase alpha chain; psychrophili	84.31
4e38_A		232	Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho	84.0
3igs_A		232	N-acetylmannosamine-6-phosphate 2-epimerase 2; ene	83.6
3kts_A		192	Glycerol uptake operon antiterminator regulatory;	83.36
1vkf_A		188	Glycerol uptake operon antiterminator-related Pro;	83.11

>2pz0_A Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase, T. tengcongensis; 1.91A {Thermoanaerobacter tengcongensis}	Back alignment and structure

Probab=100.00  E-value=1.8e-54  Score=401.36  Aligned_cols=241  Identities=25%  Similarity=0.286  Sum_probs=209.6

Q ss_pred             CCCceEEecCCCCCCccCCchhhhcccccchHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCCCcccccCCcccccccc
Q 017440           48 FPKFVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEIIEKRVT  127 (371)
Q Consensus        48 ~~~~~iiAHRG~~~~~~~~~~~~~~~~PENTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~L~r~t~g~~~~~~i~  127 (371)
                      ..+|.+|||||+++           .+||||++||++|++.|+|+||+|||+||||++||+||.+++|+|||.   +.|.
T Consensus         9 ~~~p~iiaHRG~~~-----------~~PENTl~Af~~A~~~Gad~iE~DV~lTkDG~lVv~HD~~l~Rtt~~~---g~v~   74 (252)
T 2pz0_A            9 SMKTLVIAHRGDSK-----------NVPENTIAAFKRAMELGADGIELDVQLTKDGHLVVIHDETVDRTTNGE---GFVK   74 (252)
T ss_dssp             --CCEEEEETTTTT-----------TSCTTSHHHHHHHHHHTCSEEEEEEEECTTCCEEECSSSBSTTTSSCC---SBGG
T ss_pred             cCCceEEEcCCCCC-----------CCCcchHHHHHHHHHcCCCEEEEEEEEecCCeEEEEcCCcccccCCCC---cchh
Confidence            56789999999998           899999999999999999999999999999999999999999999998   9999


Q ss_pred             ccCHHHHhccCCCCCCCCcCCccccccCCCccccccccCCCCccCHHHHHHhcCC-CceEEEEeccCCcccchhHHHHHH
Q 017440          128 DITLAEFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVDQ-SVGFNVELKFDDQLVYTEEELTHA  206 (371)
Q Consensus       128 ~~T~~eL~~l~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~iptL~evL~~~~~-~~~l~iEiK~~~~~~~~~~~~~~~  206 (371)
                      ++||+||+++    ++|.|+.+.              +.+++||||+|+|+.+++ ++.++||||.+... +.     .+
T Consensus        75 ~~t~~eL~~l----~~~~~~~~~--------------~~~~~iPtL~evL~~~~~~~~~l~iEiK~~~~~-~~-----~~  130 (252)
T 2pz0_A           75 DFTLEEIKKL----DAGIKFGEK--------------FAGERIPTLYEVFELIGDKDFLVNIEIKSGIVL-YP-----GI  130 (252)
T ss_dssp             GSCHHHHTTS----CSSTTTCGG--------------GTTCCCCBHHHHHHHHTTSCCEEEEEECCSSCC-CT-----TH
T ss_pred             hCcHHHHhhc----CCCCCCCCC--------------CCCCcCCCHHHHHHHhhhcCCeEEEEeCCCCcc-cH-----HH
Confidence            9999999999    466665432              357899999999999974 89999999986431 11     46


Q ss_pred             HHHHHHHHHHhcCCCCeEEecCCHHHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccccc
Q 017440          207 LEAILKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAI  286 (371)
Q Consensus       207 ~~~vl~~l~~~~~~~~v~i~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  286 (371)
                      ++.++++++++++.++++|+||+++.|+.+++..|++++++++.....        .   ...+++..++.++++++.. 
T Consensus       131 ~~~v~~~l~~~~~~~~vii~SF~~~~l~~~~~~~p~~~~~~l~~~~~~--------~---~~~~~~~~~~~~i~~~~~~-  198 (252)
T 2pz0_A          131 EEKLIKAIKEYNFEERVIISSFNHYSLRDVKKMAPHLKIGLLYQCGLV--------E---PWHMALRMEAYSLHPFYFN-  198 (252)
T ss_dssp             HHHHHHHHHHTTCTTTEEEEESBHHHHHHHHHHCTTSEEEEEECSBCS--------S---THHHHHHTTCSEEEEBGGG-
T ss_pred             HHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHCCCCCEEEEecCccc--------c---HHHHHHHcCCeEEecchhc-
Confidence            788999999999999999999999999999999999999998864311        1   1245677889999887664 


Q ss_pred             cCChHHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEeCChHHHHHHHHh
Q 017440          287 FKNPGAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVDLVSEITEAVSD  341 (371)
Q Consensus       287 ~~~~~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p~~l~~~l~~  341 (371)
                       +++++++.+|++|++|++| |+|+++++.+++ ++|||||+||+|..+.+++++
T Consensus       199 -~~~~~v~~~~~~G~~v~~w-Tvn~~~~~~~l~-~~GvdgIiTD~P~~~~~~l~~  250 (252)
T 2pz0_A          199 -IIPELVEGCKKNGVKLFPW-TVDRKEDMERMI-KAGVDGIITDDPETLINLVRK  250 (252)
T ss_dssp             -CCHHHHHHHHHTTCEECCB-CCCSHHHHHHHH-HHTCSEEEESCHHHHHHHHC-
T ss_pred             -CCHHHHHHHHHCCCEEEEE-CCCCHHHHHHHH-HcCCCEEEcCCHHHHHHHHhh
Confidence             5899999999999999999 999999999986 799999999999999988764

PyMOL of 2pz0

>3qvq_A Phosphodiesterase OLEI02445; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase, hydrolase; HET: MSE G3P; 1.60A {Oleispira antarctica}	Back alignment and structure

>3ks6_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Agrobacterium tumefaciens str} PDB: 3ks5_A*	Back alignment and structure

>2otd_A Glycerophosphodiester phosphodiesterase; structural genomics PSI-2, protein structure initiative, midwest center for STR genomics, hydrolase; 2.60A {Shigella flexneri}	Back alignment and structure

>2oog_A Glycerophosphoryl diester phosphodiesterase; phosphatase, ST genomics, protein structure initiative, PSI; 2.20A {Staphylococcus aureus subsp} PDB: 2p76_A	Back alignment and structure

>3l12_A Putative glycerophosphoryl diester phosphodiester; struct genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.60A {Silicibacter pomeroyi}	Back alignment and structure

>2o55_A Putative glycerophosphodiester phosphodiesterase; beta barrel, structural genomics, protein structure initiati 2; 2.81A {Galdieria sulphuraria}	Back alignment and structure

>3ch0_A Glycerophosphodiester phosphodiesterase; YP_677622.1, glycerophosphoryl diester phosphodiesterase, ST genomics; HET: MSE CIT GOL; 1.50A {Cytophaga hutchinsonii atcc 33406}	Back alignment and structure

>3no3_A Glycerophosphodiester phosphodiesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.89A {Parabacteroides distasonis} SCOP: c.1.18.0	Back alignment and structure

>1zcc_A Glycerophosphodiester phosphodiesterase; NYSGXRC, agrobacterium tumefaciens STR. C58, structural genomics; 2.50A {Agrobacterium tumefaciens str} SCOP: c.1.18.3	Back alignment and structure

>1o1z_A GDPD, glycerophosphodiester phosphodiesterase; TM1621, glycerophosphodiester phosphodiesterase (GDPD), STRU genomics, JCSG, PSI; 1.60A {Thermotoga maritima} SCOP: c.1.18.3	Back alignment and structure

>3mz2_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics; HET: MSE PE4; 1.55A {Parabacteroides distasonis}	Back alignment and structure

>1ydy_A Glycerophosphoryl diester phosphodiesterase; structural genomics, PSI, protein structu initiative; 1.70A {Escherichia coli} SCOP: c.1.18.3 PDB: 1t8q_A	Back alignment and structure

>1vd6_A Glycerophosphoryl diester phosphodiesterase; glycerophosphod phosphodiesterase, HB8; 1.30A {Thermus thermophilus} SCOP: c.1.18.3 PDB: 1v8e_A	Back alignment and structure

>3i10_A Putative glycerophosphoryl diester phosphodiester; NP_812074.1; HET: MSE; 1.35A {Bacteroides thetaiotaomicron vpi-5482}	Back alignment and structure

>1xx1_A Smase I, sphingomyelinase I; structure, quick cryo-soaking, activity, smase D, hydrolase; HET: EPE; 1.75A {Loxosceles laeta} PDB: 2f9r_A*	Back alignment and structure

>3rlg_A Sphingomyelin phosphodiesterase D lisictox-alphai; TIM beta/alpha-barrel, PLC-like phosphodiesterase, inactive H12A phospholipase D; HET: PGE; 1.60A {Loxosceles intermedia} PDB: 3rlh_A*	Back alignment and structure

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A	Back alignment and structure

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B	Back alignment and structure

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A	Back alignment and structure

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}	Back alignment and structure

>3h4x_A Phosphatidylinositol-specific phospholipase C1; PI-PLC, Ca2+-dependent, catalytic TIM barrel, disulfide-LINK loop, hydrolase; 1.23A {Streptomyces antibioticus} PDB: 3h4w_A	Back alignment and structure

>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0	Back alignment and structure

>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}	Back alignment and structure

>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4	Back alignment and structure

>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}	Back alignment and structure

>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9	Back alignment and structure

>2d73_A Alpha-glucosidase SUSB; glycoside hydrolase family 97, TIM barrel; 1.60A {Bacteroides thetaiotaomicron vpi-5482} PDB: 2zq0_A* 2jke_A* 2jka_A* 2jkp_A*	Back alignment and structure

>2rbg_A Putative uncharacterized protein ST0493; hypothetical protein, structural genomics, unknown function, NPPSFA; 1.75A {Sulfolobus tokodaii}	Back alignment and structure

>3a24_A Alpha-galactosidase; glycoside hydrolase family 97, retaining glycosidase; HET: MES; 2.30A {Bacteroides thetaiotaomicron}	Back alignment and structure

>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}	Back alignment and structure

>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}	Back alignment and structure

>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0	Back alignment and structure

>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}	Back alignment and structure

>1vkf_A Glycerol uptake operon antiterminator-related Pro; struc genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: CIT; 1.65A {Thermotoga maritima} SCOP: c.1.29.1	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		371
d1ydya1		328	c.1.18.3 (A:29-356) Glycerophosphodiester phosphod	4e-19
d1zcca1		240	c.1.18.3 (A:1-240) Glycerophosphodiester phosphodi	1e-16
d1vd6a1		217	c.1.18.3 (A:8-224) Putative glycerophosphodiester	3e-11
d1o1za_		226	c.1.18.3 (A:) Hypothetical protein TM1621 {Thermot	1e-10

>d1ydya1 c.1.18.3 (A:29-356) Glycerophosphodiester phosphodiesterase GlpQ {Escherichia coli [TaxId: 562]} Length = 328	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: PLC-like phosphodiesterases
family: Glycerophosphoryl diester phosphodiesterase
domain: Glycerophosphodiester phosphodiesterase GlpQ
species: Escherichia coli [TaxId: 562]

 Score = 85.2 bits (209), Expect = 4e-19
 Identities = 44/330 (13%), Positives = 96/330 (29%), Gaps = 62/330 (18%)

Query: 50  KFVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFH 109
           + +V+ HRG+   +            E+T+ +   A     D++E D+ +T+D   V+ H
Sbjct: 2   EKIVIAHRGASGYLP-----------EHTLPAKAMAYAQGADYLEQDLVMTKDDNLVVLH 50

Query: 110 DNFI---------FTKDEGEIIEKRVTDITLAEFLSYGPQNDPENVGKPMLRKTKDGRIF 160
           D+++         F     +       D TL E  S        ++      +T  GR  
Sbjct: 51  DHYLDRVTDVADRFPDRARKDGRYYAIDFTLDEIKSLKFTEGF-DIENGKKVQTYPGRFP 109

Query: 161 EWKVEKDTP-----LCTLQEAFEKVDQSVGFNVELKFDDQLVYTEEELTHALEAILKVVF 215
             K +         +  +Q       +++G   E+K         +++      +LK   
Sbjct: 110 MGKSDFRVHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFHHQEGKDIAAKTLEVLKKYG 169

Query: 216 EHAQGRPIMFSSFQPDAALLIRK--------------------LQSTYPVFFLTNGGAQT 255
              +   +    F  D    I+                        T       +     
Sbjct: 170 YTGKDDKVYLQCFDADELKRIKNELEPKMGMELNLVQLIAYTDWNETQQKQPDGSWVNYN 229

Query: 256 CTDVRRSSLDEAIK-----VCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVSYGELN 310
              + +    + +      +     +    +      K  G ++  ++ KL +  Y  + 
Sbjct: 230 YDWMFKPGAMKQVAEYADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYT-VR 288

Query: 311 NVPEVVYMQRF----------MGIEGVIVD 330
           +     Y               G+ G+  D
Sbjct: 289 SDKLPEYTPDVNQLYDALYNKAGVNGLFTD 318

PyMOL of d1ydya1

>d1zcca1 c.1.18.3 (A:1-240) Glycerophosphodiester phosphodiesterase UgpQ {Agrobacterium tumefaciens [TaxId: 358]} Length = 240	Back information, alignment and structure

>d1vd6a1 c.1.18.3 (A:8-224) Putative glycerophosphodiester phosphodiesterase TTHB141 {Thermus thermophilus [TaxId: 274]} Length = 217	Back information, alignment and structure

>d1o1za_ c.1.18.3 (A:) Hypothetical protein TM1621 {Thermotoga maritima [TaxId: 2336]} Length = 226	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		371
d1zcca1		240	Glycerophosphodiester phosphodiesterase UgpQ {Agro	100.0
d1o1za_		226	Hypothetical protein TM1621 {Thermotoga maritima [	100.0
d1vd6a1		217	Putative glycerophosphodiester phosphodiesterase T	100.0
d1ydya1		328	Glycerophosphodiester phosphodiesterase GlpQ {Esch	100.0
d1qasa3		327	Phospholipase C isozyme D1 (PLC-D1) {Rat (Rattus n	96.54
d2zkmx4		349	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	96.06
d1vkfa_		172	Glycerol uptake operon antiterminator-related prot	85.31
d1vhca_		212	Hypothetical protein HI0047 {Haemophilus influenza	82.86
d1geqa_		248	Trp synthase alpha-subunit {Archaeon Pyrococcus fu	81.28
d1wbha1		213	KDPG aldolase {Escherichia coli [TaxId: 562]}	80.81

>d1zcca1 c.1.18.3 (A:1-240) Glycerophosphodiester phosphodiesterase UgpQ {Agrobacterium tumefaciens [TaxId: 358]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: PLC-like phosphodiesterases
family: Glycerophosphoryl diester phosphodiesterase
domain: Glycerophosphodiester phosphodiesterase UgpQ
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=100.00  E-value=9.1e-51  Score=371.23  Aligned_cols=234  Identities=19%  Similarity=0.207  Sum_probs=193.0

Q ss_pred             ceEEecCCCCCCccCCchhhhcccccchHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCCCcccccCCccccccccccC
Q 017440           51 FVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEIIEKRVTDIT  130 (371)
Q Consensus        51 ~~iiAHRG~~~~~~~~~~~~~~~~PENTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~L~r~t~g~~~~~~i~~~T  130 (371)
                      ..||||||+++           .+||||++||+.|++.|+|+||+|||+||||++||+||++++|+||+.   +.|+++|
T Consensus         2 t~iiaHRG~~~-----------~~pENT~~a~~~A~~~G~~~iE~Dv~~TkDg~~Vv~HD~~l~r~t~~~---~~v~~~t   67 (240)
T d1zcca1           2 TKIVSHRGANR-----------FAPENTFAAADLALQQGADYIELDVRESADGVLYVIHDETLDRTTNGT---GPVGHML   67 (240)
T ss_dssp             CEEEETTTTTT-----------TSCSSSHHHHHHHHHTTCSEEEEEEEECTTCCEEECSSSBTTTTSSCC---SBSTTSC
T ss_pred             CEEEECCCCCC-----------CCCccHHHHHHHHHHcCCCEEEEEEEEecCCCEEEecccccccccccc---ccHHHhh
Confidence            36999999997           899999999999999999999999999999999999999999999998   9999999


Q ss_pred             HHHHhccCCCCCCCCcCCccccccCCCccccccccCCCCccCHHHHHHhcCCCceEEEEeccCCcccchhHHHHHHHHHH
Q 017440          131 LAEFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVDQSVGFNVELKFDDQLVYTEEELTHALEAI  210 (371)
Q Consensus       131 ~~eL~~l~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~iptL~evL~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~v  210 (371)
                      |+||+++    ++|+++..              ...+++||||+|+|+.+++++.++||+|.+.            .+.+
T Consensus        68 ~~el~~l----~~~~~~~~--------------~~~~~~IptL~evl~~~~~~~~l~iEiK~~~------------~~~v  117 (240)
T d1zcca1          68 SSEIDTL----DAGGWFDD--------------RFKGAIVPRLDAYLEHLRGRAGVYIELKYCD------------PAKV  117 (240)
T ss_dssp             HHHHTTS----CSSTTTCG--------------GGTTCCCCBHHHHHHHHTTTCEEEEEEEESC------------HHHH
T ss_pred             HHHHHHh----hccCcCcc--------------ccCCCcCChHHHhhhcccccceeEEEEccCc------------chhh
Confidence            9999999    45655433              2467899999999999998899999999864            2456


Q ss_pred             HHHHHHhcCCCCeEEecCCHHHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccccccCCh
Q 017440          211 LKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNP  290 (371)
Q Consensus       211 l~~l~~~~~~~~v~i~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  290 (371)
                      .++++++++.++++++||+++.++.+++..|+++++++......       ...    ..+ ......+..... .+.++
T Consensus       118 ~~l~~~~~~~~~v~~~Sf~~~~l~~~~~~~P~~~~~~~~~~~~~-------~~~----~~~-~~~~~~~~~~~~-~~~~~  184 (240)
T d1zcca1         118 AALVRHLGMVRDTFYFSFSEEMRQGLQSIAPEFRRMMTLDIAKS-------PSL----VGA-VHHASIIEITPA-QMRRP  184 (240)
T ss_dssp             HHHHHHHTCSTTEEEECSCHHHHHHHHHHCTTSEEEEEHHHHSS-------THH----HHH-TTCCSEEEECHH-HHHSH
T ss_pred             hHHHHHHHhhcccccccccHHHHHHHHHhhhccceEEeeccccc-------chh----HHH-Hhcccccccchh-hhCCH
Confidence            77888999999999999999999999999999999998743210       111    111 122233332222 23589


Q ss_pred             HHHHHHHHhCCeEEEecccCChHHH-HHHHHhcCceEEEeCChHHHHHHHHhhh
Q 017440          291 GAIKKIKEAKLCLVSYGELNNVPEV-VYMQRFMGIEGVIVDLVSEITEAVSDFI  343 (371)
Q Consensus       291 ~~v~~~~~~Gl~v~~wgtvn~~~~~-~~l~~~~GVdgIiTD~p~~l~~~l~~~~  343 (371)
                      ++++.+|++|++|++| |+|++.++ +++ .++|||||+||+|+.+.++++++.
T Consensus       185 ~~v~~~~~~Gl~v~~w-Tvnd~~~~~~~l-~~~gVdgI~TD~P~l~~~vr~~~~  236 (240)
T d1zcca1         185 GIIEASRKAGLEIMVY-YGGDDMAVHREI-ATSDVDYINLDRPDLFAAVRSGMA  236 (240)
T ss_dssp             HHHHHHHHHTCEEEEE-CCCCCHHHHHHH-HHSSCSEEEESCHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCEEEEE-ccCCHHHHHHHH-HHcCCCEEEeCcHHHHHHHHHHHH
Confidence            9999999999999999 99876655 455 479999999999999999887654

PyMOL of d1zcca1

>d1o1za_ c.1.18.3 (A:) Hypothetical protein TM1621 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1vd6a1 c.1.18.3 (A:8-224) Putative glycerophosphodiester phosphodiesterase TTHB141 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1ydya1 c.1.18.3 (A:29-356) Glycerophosphodiester phosphodiesterase GlpQ {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1qasa3 c.1.18.1 (A:299-625) Phospholipase C isozyme D1 (PLC-D1) {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d2zkmx4 c.1.18.1 (X:312-660) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1vkfa_ c.1.29.1 (A:) Glycerol uptake operon antiterminator-related protein TM1436 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]}	Back information, alignment and structure

>d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure